Query 008692
Match_columns 557
No_of_seqs 230 out of 1589
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 15:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01314 gntK_FGGY gluconate 100.0 4.8E-98 1E-102 816.8 48.0 484 11-556 1-499 (505)
2 PRK15027 xylulokinase; Provisi 100.0 4.5E-98 1E-102 812.9 47.2 479 11-554 1-483 (484)
3 PLN02669 xylulokinase 100.0 2E-96 4E-101 807.0 53.1 542 4-556 2-555 (556)
4 PRK00047 glpK glycerol kinase; 100.0 5.4E-94 1.2E-98 783.6 45.3 475 10-552 5-496 (498)
5 PTZ00294 glycerol kinase-like 100.0 7.7E-94 1.7E-98 783.1 45.2 478 10-551 2-499 (504)
6 TIGR01315 5C_CHO_kinase FGGY-f 100.0 3.6E-94 7.8E-99 790.6 41.3 488 11-553 1-540 (541)
7 PLN02295 glycerol kinase 100.0 1.5E-93 3.3E-98 781.8 43.6 474 11-551 1-505 (512)
8 PRK10939 autoinducer-2 (AI-2) 100.0 4.6E-93 9.9E-98 779.8 45.0 485 10-555 3-507 (520)
9 TIGR01234 L-ribulokinase L-rib 100.0 1.8E-92 3.9E-97 777.3 45.2 493 11-552 2-532 (536)
10 PRK04123 ribulokinase; Provisi 100.0 1.7E-92 3.7E-97 780.4 45.1 492 10-550 3-533 (548)
11 TIGR01311 glycerol_kin glycero 100.0 2.5E-91 5.4E-96 761.7 44.9 473 10-551 1-491 (493)
12 PRK10331 L-fuculokinase; Provi 100.0 1.8E-91 3.8E-96 758.6 42.4 458 10-538 2-469 (470)
13 TIGR01312 XylB D-xylulose kina 100.0 1.9E-90 4.2E-95 754.3 45.5 474 13-547 1-480 (481)
14 COG1070 XylB Sugar (pentulose 100.0 2.6E-90 5.7E-95 753.0 46.1 489 7-556 1-500 (502)
15 COG0554 GlpK Glycerol kinase [ 100.0 7.3E-89 1.6E-93 696.1 38.1 473 9-551 4-494 (499)
16 TIGR02628 fuculo_kin_coli L-fu 100.0 4.9E-88 1.1E-92 730.4 41.3 449 11-524 2-465 (465)
17 COG1069 AraB Ribulose kinase [ 100.0 1.6E-77 3.5E-82 621.1 36.4 494 9-556 2-531 (544)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 2.6E-77 5.6E-82 645.2 33.6 425 13-511 1-446 (454)
19 PRK10640 rhaB rhamnulokinase; 100.0 2.7E-75 5.8E-80 630.5 35.7 420 64-549 31-466 (471)
20 KOG2517 Ribulose kinase and re 100.0 9.1E-69 2E-73 561.3 33.0 477 9-552 5-508 (516)
21 KOG2531 Sugar (pentulose and h 100.0 4.3E-67 9.4E-72 527.1 41.5 533 7-550 6-544 (545)
22 PF00370 FGGY_N: FGGY family o 100.0 1.7E-54 3.6E-59 430.8 19.5 243 11-289 1-245 (245)
23 PF02782 FGGY_C: FGGY family o 100.0 8.6E-32 1.9E-36 258.8 15.6 184 298-494 1-197 (198)
24 TIGR00241 CoA_E_activ CoA-subs 99.5 1.7E-14 3.8E-19 143.6 10.4 69 418-490 178-248 (248)
25 TIGR02259 benz_CoA_red_A benzo 98.6 8.2E-07 1.8E-11 91.5 13.6 128 338-491 299-432 (432)
26 PRK13317 pantothenate kinase; 97.9 0.00025 5.5E-09 71.5 14.6 166 297-492 98-273 (277)
27 COG1940 NagC Transcriptional r 97.9 6.7E-05 1.5E-09 77.4 9.8 115 8-148 4-122 (314)
28 PRK09472 ftsA cell division pr 97.8 0.0041 9E-08 66.9 23.7 61 418-478 292-360 (420)
29 PRK13311 N-acetyl-D-glucosamin 97.6 0.0002 4.4E-09 71.7 8.7 71 11-109 1-71 (256)
30 TIGR01174 ftsA cell division p 97.6 0.033 7.2E-07 58.8 25.9 61 419-479 285-347 (371)
31 PRK09698 D-allose kinase; Prov 97.6 0.00037 8E-09 71.5 10.4 75 10-111 4-78 (302)
32 PRK09557 fructokinase; Reviewe 97.5 0.00035 7.6E-09 71.6 9.0 73 11-111 1-74 (301)
33 PRK13310 N-acetyl-D-glucosamin 97.5 0.00035 7.6E-09 71.7 8.4 71 11-109 1-71 (303)
34 smart00732 YqgFc Likely ribonu 97.4 0.00018 3.8E-09 60.7 4.3 29 12-40 3-31 (99)
35 TIGR03192 benz_CoA_bzdQ benzoy 97.4 0.00058 1.2E-08 68.9 7.9 75 417-494 213-289 (293)
36 COG1924 Activator of 2-hydroxy 97.4 0.00095 2.1E-08 68.5 9.5 130 336-493 258-390 (396)
37 TIGR00744 ROK_glcA_fam ROK fam 97.3 0.00071 1.5E-08 69.8 8.5 72 13-111 1-75 (318)
38 PF00480 ROK: ROK family; Int 97.3 0.00031 6.6E-09 66.1 5.1 67 14-110 1-67 (179)
39 TIGR03286 methan_mark_15 putat 97.1 0.0014 3E-08 68.7 7.8 71 417-491 328-401 (404)
40 TIGR00555 panK_eukar pantothen 97.1 0.017 3.7E-07 58.2 15.2 167 298-489 104-278 (279)
41 PRK05082 N-acetylmannosamine k 97.1 0.0018 3.8E-08 66.1 8.4 63 12-100 3-65 (291)
42 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.0019 4.1E-08 65.2 8.0 66 10-102 32-99 (293)
43 PRK13410 molecular chaperone D 96.9 0.0024 5.3E-08 72.5 8.2 75 420-494 301-377 (668)
44 TIGR03286 methan_mark_15 putat 96.9 0.003 6.5E-08 66.3 8.2 29 338-367 272-300 (404)
45 TIGR02261 benz_CoA_red_D benzo 96.9 0.0044 9.6E-08 61.6 8.7 73 417-491 184-262 (262)
46 CHL00094 dnaK heat shock prote 96.8 0.0029 6.3E-08 71.5 8.2 50 445-494 327-377 (621)
47 TIGR02261 benz_CoA_red_D benzo 96.6 0.006 1.3E-07 60.7 7.4 68 11-101 2-72 (262)
48 TIGR02529 EutJ ethanolamine ut 96.6 0.0038 8.3E-08 61.8 6.0 67 419-489 171-238 (239)
49 PRK15080 ethanolamine utilizat 96.6 0.0054 1.2E-07 61.8 7.2 69 419-491 198-267 (267)
50 PTZ00186 heat shock 70 kDa pre 96.6 0.0061 1.3E-07 69.1 8.3 76 419-494 325-402 (657)
51 PRK00290 dnaK molecular chaper 96.3 0.0099 2.1E-07 67.3 8.1 76 419-494 298-375 (627)
52 PRK00292 glk glucokinase; Prov 96.1 0.0088 1.9E-07 61.8 5.8 69 421-493 232-315 (316)
53 PRK05183 hscA chaperone protei 96.1 0.017 3.6E-07 65.3 8.2 77 418-494 299-377 (616)
54 TIGR02350 prok_dnaK chaperone 96.1 0.017 3.6E-07 65.1 8.1 76 419-494 296-373 (595)
55 COG1924 Activator of 2-hydroxy 96.0 0.018 3.8E-07 59.4 7.3 71 8-104 133-203 (396)
56 PRK01433 hscA chaperone protei 96.0 0.023 4.9E-07 63.8 8.9 75 419-494 282-357 (595)
57 TIGR01991 HscA Fe-S protein as 96.0 0.018 3.9E-07 64.8 8.0 76 419-494 284-361 (599)
58 PRK13928 rod shape-determining 96.0 0.015 3.2E-07 60.7 6.8 75 419-493 244-323 (336)
59 PF00012 HSP70: Hsp70 protein; 95.9 0.013 2.8E-07 66.0 6.6 74 421-494 302-377 (602)
60 PRK13318 pantothenate kinase; 95.8 0.022 4.8E-07 57.1 6.8 66 418-492 185-252 (258)
61 PF01869 BcrAD_BadFG: BadF/Bad 95.7 0.014 3E-07 58.9 5.2 73 419-491 191-271 (271)
62 PLN02920 pantothenate kinase 1 95.7 0.31 6.6E-06 51.2 15.0 172 297-492 167-351 (398)
63 PLN03184 chloroplast Hsp70; Pr 95.7 0.028 6.1E-07 64.1 8.0 71 424-494 342-414 (673)
64 PTZ00400 DnaK-type molecular c 95.7 0.022 4.7E-07 64.9 7.0 75 420-494 340-416 (663)
65 PRK13321 pantothenate kinase; 95.6 0.023 5.1E-07 56.8 6.3 66 418-492 185-252 (256)
66 PF05378 Hydant_A_N: Hydantoin 95.6 0.022 4.8E-07 53.6 5.5 76 13-113 2-79 (176)
67 PRK12408 glucokinase; Provisio 95.5 0.012 2.6E-07 61.4 4.0 67 422-492 251-332 (336)
68 COG2971 Predicted N-acetylgluc 95.5 0.039 8.6E-07 55.5 7.1 67 423-494 225-292 (301)
69 PTZ00009 heat shock 70 kDa pro 95.4 0.031 6.8E-07 63.6 7.1 75 420-494 305-382 (653)
70 PF03702 UPF0075: Uncharacteri 95.3 0.11 2.4E-06 54.5 10.2 86 418-509 258-349 (364)
71 PRK13411 molecular chaperone D 95.1 0.044 9.6E-07 62.3 7.0 75 420-494 300-377 (653)
72 PRK13927 rod shape-determining 95.1 0.052 1.1E-06 56.4 7.1 74 420-493 246-324 (334)
73 PRK09585 anmK anhydro-N-acetyl 94.9 0.096 2.1E-06 54.9 8.2 75 418-494 260-339 (365)
74 PRK14101 bifunctional glucokin 94.8 0.022 4.7E-07 64.7 3.7 105 10-148 18-122 (638)
75 PRK11678 putative chaperone; P 94.8 0.12 2.5E-06 56.1 9.1 73 419-493 374-447 (450)
76 TIGR00904 mreB cell shape dete 94.7 0.07 1.5E-06 55.5 6.9 75 419-493 248-327 (333)
77 smart00842 FtsA Cell division 94.7 0.17 3.8E-06 47.9 9.0 71 12-99 1-77 (187)
78 PRK13930 rod shape-determining 94.6 0.063 1.4E-06 55.8 6.1 74 420-493 250-328 (335)
79 PF14574 DUF4445: Domain of un 94.3 0.031 6.8E-07 59.4 3.2 85 11-99 2-92 (412)
80 PRK15080 ethanolamine utilizat 94.3 0.21 4.6E-06 50.3 8.9 60 8-83 22-81 (267)
81 PRK13929 rod-share determining 94.1 0.088 1.9E-06 54.8 5.9 69 423-491 251-324 (335)
82 KOG0103 Molecular chaperones H 94.0 0.11 2.3E-06 57.5 6.5 76 419-494 305-382 (727)
83 COG2377 Predicted molecular ch 93.6 0.36 7.9E-06 49.9 9.2 75 418-494 264-341 (371)
84 TIGR01175 pilM type IV pilus a 92.6 0.3 6.4E-06 51.0 7.1 60 420-479 253-315 (348)
85 PF11104 PilM_2: Type IV pilus 92.5 0.21 4.5E-06 52.2 5.7 60 419-478 244-306 (340)
86 PF03630 Fumble: Fumble ; Int 92.2 1.2 2.6E-05 46.4 10.8 167 297-490 158-339 (341)
87 COG0443 DnaK Molecular chapero 91.8 0.5 1.1E-05 52.9 8.0 51 444-494 307-358 (579)
88 PRK09604 UGMP family protein; 91.1 0.44 9.6E-06 49.6 6.3 77 418-494 226-309 (332)
89 KOG0100 Molecular chaperones G 90.8 0.52 1.1E-05 49.0 6.2 51 444-494 360-412 (663)
90 PF13941 MutL: MutL protein 90.8 0.83 1.8E-05 49.3 8.0 68 12-102 2-76 (457)
91 PRK14878 UGMP family protein; 90.5 0.64 1.4E-05 48.2 6.8 76 418-494 213-291 (323)
92 TIGR02529 EutJ ethanolamine ut 90.4 0.85 1.9E-05 45.1 7.3 53 14-82 1-53 (239)
93 PF01869 BcrAD_BadFG: BadF/Bad 90.2 1.2 2.6E-05 44.8 8.3 62 13-94 1-65 (271)
94 PLN02902 pantothenate kinase 90.0 5.9 0.00013 45.8 14.2 172 297-492 216-400 (876)
95 TIGR02707 butyr_kinase butyrat 90.0 0.82 1.8E-05 47.9 7.1 58 422-479 267-328 (351)
96 PRK13317 pantothenate kinase; 90.0 0.36 7.7E-06 48.9 4.3 27 10-36 2-28 (277)
97 PF06723 MreB_Mbl: MreB/Mbl pr 89.6 0.5 1.1E-05 48.9 5.1 68 424-491 247-319 (326)
98 TIGR00143 hypF [NiFe] hydrogen 89.6 0.5 1.1E-05 54.1 5.5 75 418-492 630-711 (711)
99 PTZ00288 glucokinase 1; Provis 88.4 1.9 4.1E-05 46.0 8.5 70 9-98 25-100 (405)
100 PF00349 Hexokinase_1: Hexokin 88.2 0.88 1.9E-05 43.9 5.4 73 10-98 63-139 (206)
101 TIGR00749 glk glucokinase, pro 87.9 1.6 3.5E-05 45.0 7.5 24 13-36 1-24 (316)
102 COG4820 EutJ Ethanolamine util 87.7 1.1 2.4E-05 42.4 5.5 66 423-492 207-273 (277)
103 KOG0101 Molecular chaperones H 87.5 1.3 2.8E-05 49.3 6.7 72 419-494 310-384 (620)
104 COG4972 PilM Tfp pilus assembl 87.3 1.3 2.7E-05 45.3 6.0 61 419-479 257-320 (354)
105 TIGR03281 methan_mark_12 putat 87.3 1.6 3.5E-05 44.1 6.7 66 423-492 242-310 (326)
106 KOG1794 N-Acetylglucosamine ki 86.9 3.2 7E-05 41.6 8.4 75 420-494 234-317 (336)
107 TIGR03723 bact_gcp putative gl 86.7 1.8 3.8E-05 44.8 6.9 62 418-479 231-295 (314)
108 TIGR03123 one_C_unchar_1 proba 86.7 1 2.2E-05 46.4 5.0 66 13-103 1-66 (318)
109 PTZ00340 O-sialoglycoprotein e 86.5 1.5 3.3E-05 45.6 6.3 76 418-494 235-313 (345)
110 COG2192 Predicted carbamoyl tr 85.8 1.8 3.8E-05 47.2 6.5 74 418-494 260-336 (555)
111 PF11104 PilM_2: Type IV pilus 85.6 2.4 5.1E-05 44.2 7.3 69 14-99 1-72 (340)
112 PTZ00297 pantothenate kinase; 84.9 17 0.00036 45.3 15.0 75 417-491 1362-1444(1452)
113 TIGR01175 pilM type IV pilus a 84.5 3.4 7.3E-05 43.1 8.0 33 10-42 3-38 (348)
114 PF02543 CmcH_NodU: Carbamoylt 84.3 1.5 3.3E-05 46.1 5.1 73 418-494 134-214 (360)
115 PRK13324 pantothenate kinase; 83.7 3.8 8.2E-05 41.0 7.4 66 418-493 185-252 (258)
116 COG3734 DgoK 2-keto-3-deoxy-ga 83.4 1.7 3.6E-05 43.5 4.7 34 7-40 2-35 (306)
117 TIGR03722 arch_KAE1 universal 83.2 2.7 5.9E-05 43.5 6.5 62 418-479 214-278 (322)
118 PRK09605 bifunctional UGMP fam 82.6 2.8 6.1E-05 46.6 6.8 74 419-492 218-298 (535)
119 PRK13320 pantothenate kinase; 82.3 4.5 9.8E-05 40.1 7.4 66 418-491 175-240 (244)
120 PF07318 DUF1464: Protein of u 81.5 4.3 9.3E-05 42.0 7.0 78 422-507 239-325 (343)
121 TIGR00329 gcp_kae1 metallohydr 81.3 2.6 5.7E-05 43.3 5.5 61 418-478 230-293 (305)
122 PRK00976 hypothetical protein; 80.5 6.3 0.00014 40.6 7.8 70 420-494 241-312 (326)
123 PRK13326 pantothenate kinase; 79.5 4.5 9.7E-05 40.6 6.3 65 418-491 187-253 (262)
124 COG0533 QRI7 Metal-dependent p 79.1 4.6 0.0001 41.7 6.2 76 418-494 233-311 (342)
125 PRK03011 butyrate kinase; Prov 76.4 5.2 0.00011 42.1 6.0 69 421-489 268-343 (358)
126 TIGR00671 baf pantothenate kin 76.3 7.5 0.00016 38.5 6.8 41 418-459 177-219 (243)
127 COG0849 ftsA Cell division ATP 76.1 16 0.00035 39.2 9.6 62 418-479 291-353 (418)
128 COG0145 HyuA N-methylhydantoin 76.1 6.7 0.00015 44.7 7.1 77 10-111 2-78 (674)
129 PF14450 FtsA: Cell division p 75.2 3.4 7.3E-05 36.1 3.6 60 12-83 1-60 (120)
130 COG3894 Uncharacterized metal- 74.7 4 8.6E-05 43.9 4.5 37 6-42 160-197 (614)
131 TIGR00555 panK_eukar pantothen 74.4 4.5 9.7E-05 40.9 4.7 26 12-37 2-27 (279)
132 COG3426 Butyrate kinase [Energ 72.8 9.1 0.0002 38.4 6.2 58 421-478 269-330 (358)
133 KOG1794 N-Acetylglucosamine ki 72.2 16 0.00036 36.8 7.8 69 10-97 3-74 (336)
134 PLN02914 hexokinase 72.0 9.7 0.00021 41.7 6.8 59 11-85 96-157 (490)
135 COG0068 HypF Hydrogenase matur 71.5 10 0.00022 42.7 6.8 75 418-492 665-746 (750)
136 KOG0102 Molecular chaperones m 71.3 3.7 7.9E-05 44.6 3.3 50 445-494 352-402 (640)
137 COG4020 Uncharacterized protei 71.1 15 0.00033 36.1 7.1 69 423-493 244-317 (332)
138 PRK00976 hypothetical protein; 71.0 11 0.00024 38.9 6.6 20 11-30 2-21 (326)
139 TIGR03281 methan_mark_12 putat 68.5 6.5 0.00014 39.9 4.2 23 12-34 1-23 (326)
140 PF00871 Acetate_kinase: Aceto 68.4 11 0.00024 40.0 6.2 54 423-476 295-352 (388)
141 PRK13327 pantothenate kinase; 67.4 1.3E+02 0.0029 29.7 13.2 67 418-494 171-239 (242)
142 COG1548 Predicted transcriptio 66.8 12 0.00026 37.0 5.5 66 419-491 255-327 (330)
143 COG4972 PilM Tfp pilus assembl 66.3 15 0.00033 37.7 6.3 33 5-37 3-37 (354)
144 PF07318 DUF1464: Protein of u 65.0 4.9 0.00011 41.6 2.6 29 14-42 1-29 (343)
145 PLN02362 hexokinase 64.8 15 0.00032 40.5 6.4 60 10-85 95-157 (509)
146 KOG0104 Molecular chaperones G 64.7 12 0.00026 42.4 5.6 75 420-494 329-414 (902)
147 PRK10854 exopolyphosphatase; P 64.7 18 0.00039 40.1 7.2 35 8-42 9-46 (513)
148 PRK13331 pantothenate kinase; 64.7 16 0.00035 36.4 6.2 66 418-491 175-247 (251)
149 PRK09604 UGMP family protein; 64.4 16 0.00034 38.1 6.3 80 11-99 2-81 (332)
150 PLN02405 hexokinase 63.4 16 0.00035 40.0 6.5 59 10-84 95-156 (497)
151 PRK00290 dnaK molecular chaper 63.2 6 0.00013 44.9 3.2 21 11-32 3-23 (627)
152 PRK03011 butyrate kinase; Prov 63.1 24 0.00052 37.1 7.5 32 11-43 3-34 (358)
153 PLN02596 hexokinase-like 62.9 18 0.00038 39.7 6.5 58 11-84 97-157 (490)
154 PLN02666 5-oxoprolinase 61.7 17 0.00037 44.5 6.7 72 418-491 455-532 (1275)
155 PRK13328 pantothenate kinase; 61.5 1.7E+02 0.0037 29.1 12.9 67 418-493 185-253 (255)
156 COG4820 EutJ Ethanolamine util 60.9 21 0.00046 34.1 5.8 51 94-154 32-84 (277)
157 CHL00094 dnaK heat shock prote 60.9 6.9 0.00015 44.4 3.2 22 11-33 3-24 (621)
158 PTZ00340 O-sialoglycoprotein e 60.7 23 0.00049 37.0 6.7 78 11-99 2-79 (345)
159 KOG1369 Hexokinase [Carbohydra 60.1 20 0.00043 38.9 6.2 76 419-494 376-467 (474)
160 TIGR03706 exo_poly_only exopol 59.8 21 0.00045 36.5 6.2 30 12-41 2-34 (300)
161 PF03727 Hexokinase_2: Hexokin 59.6 23 0.00051 35.0 6.3 45 450-494 189-241 (243)
162 TIGR00329 gcp_kae1 metallohydr 59.1 16 0.00034 37.6 5.2 77 13-98 1-77 (305)
163 PRK11031 guanosine pentaphosph 58.5 29 0.00063 38.2 7.5 33 9-41 5-40 (496)
164 PRK13411 molecular chaperone D 58.3 9 0.0002 43.7 3.5 21 11-32 3-23 (653)
165 COG1521 Pantothenate kinase ty 57.7 22 0.00047 35.4 5.6 66 418-492 183-249 (251)
166 PTZ00009 heat shock 70 kDa pro 57.5 10 0.00023 43.3 3.9 23 7-29 1-23 (653)
167 COG1077 MreB Actin-like ATPase 57.3 15 0.00032 37.7 4.4 71 419-489 252-327 (342)
168 PRK12440 acetate kinase; Revie 57.2 15 0.00033 38.9 4.7 48 423-471 296-346 (397)
169 TIGR00016 ackA acetate kinase. 56.8 59 0.0013 34.7 9.0 49 423-471 302-353 (404)
170 PRK13329 pantothenate kinase; 56.7 2.1E+02 0.0045 28.4 12.5 67 418-493 178-246 (249)
171 PRK12397 propionate kinase; Re 56.2 60 0.0013 34.6 8.9 47 423-469 297-345 (404)
172 PRK09557 fructokinase; Reviewe 55.6 35 0.00077 34.6 7.1 49 262-315 90-143 (301)
173 PRK11678 putative chaperone; P 55.5 8.8 0.00019 41.7 2.7 21 12-33 2-22 (450)
174 COG0849 ftsA Cell division ATP 55.3 46 0.00099 35.8 8.0 73 11-98 7-83 (418)
175 PTZ00107 hexokinase; Provision 55.3 27 0.00059 38.1 6.4 47 448-494 406-460 (464)
176 COG0282 ackA Acetate kinase [E 55.1 20 0.00043 37.7 5.0 81 11-95 2-87 (396)
177 PF04312 DUF460: Protein of un 54.3 23 0.00049 31.7 4.6 31 9-40 31-61 (138)
178 COG0443 DnaK Molecular chapero 54.3 16 0.00035 41.1 4.6 22 10-31 5-26 (579)
179 PRK13310 N-acetyl-D-glucosamin 53.9 59 0.0013 33.0 8.4 51 260-315 88-143 (303)
180 PF05035 DGOK: 2-keto-3-deoxy- 53.9 13 0.00028 37.8 3.5 70 419-491 216-286 (287)
181 PRK13410 molecular chaperone D 52.9 12 0.00027 42.8 3.5 22 11-33 3-24 (668)
182 PRK07058 acetate kinase; Provi 52.7 19 0.00042 38.1 4.6 48 423-471 294-344 (396)
183 PRK14101 bifunctional glucokin 52.6 35 0.00075 38.9 7.1 80 424-506 250-343 (638)
184 PRK09605 bifunctional UGMP fam 51.4 34 0.00074 38.0 6.7 76 11-98 2-77 (535)
185 TIGR01319 glmL_fam conserved h 50.5 34 0.00074 37.0 6.0 29 15-43 1-30 (463)
186 COG1521 Pantothenate kinase ty 50.2 87 0.0019 31.2 8.5 29 12-41 2-30 (251)
187 PTZ00107 hexokinase; Provision 49.3 45 0.00098 36.4 6.9 23 10-32 74-96 (464)
188 PTZ00186 heat shock 70 kDa pre 49.2 16 0.00035 41.8 3.6 21 10-30 27-47 (657)
189 PRK05183 hscA chaperone protei 49.1 15 0.00032 41.7 3.3 20 10-29 19-38 (616)
190 PRK13321 pantothenate kinase; 48.7 2.5E+02 0.0054 27.8 11.8 63 12-98 2-64 (256)
191 PF00012 HSP70: Hsp70 protein; 48.6 12 0.00027 41.9 2.7 18 12-29 1-18 (602)
192 TIGR01865 cas_Csn1 CRISPR-asso 48.2 13 0.00029 43.4 2.9 23 10-32 1-23 (805)
193 TIGR02350 prok_dnaK chaperone 48.2 14 0.0003 41.7 2.9 20 12-32 2-21 (595)
194 TIGR03723 bact_gcp putative gl 47.9 33 0.00071 35.4 5.4 79 12-99 1-79 (314)
195 PRK01433 hscA chaperone protei 47.8 17 0.00038 41.0 3.6 22 10-32 19-40 (595)
196 TIGR03492 conserved hypothetic 47.6 76 0.0017 33.8 8.3 60 418-482 64-124 (396)
197 PRK05082 N-acetylmannosamine k 47.1 58 0.0012 32.8 7.1 68 421-492 212-287 (291)
198 PRK13322 pantothenate kinase; 47.0 15 0.00033 36.4 2.7 65 418-492 177-243 (246)
199 KOG2201 Pantothenate kinase Pa 46.8 78 0.0017 32.6 7.6 74 417-490 275-356 (371)
200 TIGR00671 baf pantothenate kin 46.4 1.4E+02 0.0031 29.5 9.5 23 13-36 2-24 (243)
201 PF01548 DEDD_Tnp_IS110: Trans 46.4 36 0.00078 30.2 4.9 29 12-40 1-29 (144)
202 PRK07157 acetate kinase; Provi 45.9 1E+02 0.0022 32.9 8.6 50 422-471 294-346 (400)
203 PRK12408 glucokinase; Provisio 44.4 67 0.0015 33.4 7.2 24 10-33 16-39 (336)
204 PF14639 YqgF: Holliday-juncti 43.3 90 0.002 28.5 6.9 29 11-39 6-38 (150)
205 COG0248 GppA Exopolyphosphatas 42.8 28 0.0006 38.3 4.1 21 10-30 3-23 (492)
206 PTZ00400 DnaK-type molecular c 42.6 21 0.00046 40.9 3.3 19 11-29 42-60 (663)
207 PF03309 Pan_kinase: Type III 41.3 24 0.00052 33.9 3.0 20 12-31 1-20 (206)
208 PRK13320 pantothenate kinase; 40.5 3.7E+02 0.0081 26.5 12.2 24 11-35 3-26 (244)
209 COG2441 Predicted butyrate kin 40.5 36 0.00079 34.2 4.0 81 419-508 250-343 (374)
210 PRK13328 pantothenate kinase; 40.0 29 0.00062 34.7 3.4 23 12-34 3-25 (255)
211 PLN03184 chloroplast Hsp70; Pr 39.9 24 0.00053 40.4 3.3 21 11-32 40-60 (673)
212 TIGR00904 mreB cell shape dete 39.9 23 0.00049 36.7 2.8 21 13-34 5-25 (333)
213 TIGR03722 arch_KAE1 universal 39.4 55 0.0012 33.8 5.6 75 13-99 1-75 (322)
214 TIGR00744 ROK_glcA_fam ROK fam 39.3 67 0.0015 32.7 6.2 50 260-314 89-143 (318)
215 PRK13331 pantothenate kinase; 38.8 4.1E+02 0.0089 26.5 12.0 24 11-35 8-31 (251)
216 PRK09698 D-allose kinase; Prov 38.6 1.5E+02 0.0032 30.0 8.6 69 421-493 215-296 (302)
217 PF01968 Hydantoinase_A: Hydan 38.3 22 0.00049 36.1 2.4 72 418-489 208-283 (290)
218 PRK13930 rod shape-determining 37.6 24 0.00053 36.3 2.6 15 13-27 11-25 (335)
219 PLN02405 hexokinase 37.1 81 0.0018 34.7 6.5 57 254-312 204-261 (497)
220 PLN02914 hexokinase 36.9 83 0.0018 34.6 6.6 57 254-312 204-261 (490)
221 PRK00039 ruvC Holliday junctio 36.6 1.6E+02 0.0034 27.3 7.5 22 11-32 3-24 (164)
222 PLN02596 hexokinase-like 36.1 1.1E+02 0.0024 33.6 7.4 52 259-312 209-261 (490)
223 TIGR01991 HscA Fe-S protein as 35.6 25 0.00055 39.7 2.5 18 12-29 1-18 (599)
224 COG5026 Hexokinase [Carbohydra 35.6 35 0.00077 36.4 3.3 76 419-494 369-459 (466)
225 PRK13928 rod shape-determining 35.0 25 0.00055 36.4 2.2 22 13-35 6-27 (336)
226 PRK13322 pantothenate kinase; 34.4 4.7E+02 0.01 25.8 12.1 23 12-34 2-24 (246)
227 COG3513 Predicted CRISPR-assoc 33.9 34 0.00074 39.2 3.0 25 7-31 1-25 (1088)
228 PF02075 RuvC: Crossover junct 33.8 80 0.0017 28.6 5.1 23 12-34 1-23 (149)
229 PRK13917 plasmid segregation p 33.6 1.1E+02 0.0024 31.9 6.8 45 445-492 290-335 (344)
230 PRK00292 glk glucokinase; Prov 33.4 80 0.0017 32.3 5.6 31 10-40 2-33 (316)
231 TIGR03739 PRTRC_D PRTRC system 32.7 1.7E+02 0.0037 30.0 8.0 51 438-490 265-317 (320)
232 TIGR03725 bact_YeaZ universal 32.7 1E+02 0.0022 29.5 5.8 62 12-98 1-62 (202)
233 PF03652 UPF0081: Uncharacteri 32.5 1.3E+02 0.0028 26.9 6.1 23 11-33 2-24 (135)
234 COG5146 PanK Pantothenate kina 32.4 1.8E+02 0.0038 28.8 7.2 78 416-493 247-332 (342)
235 PF02685 Glucokinase: Glucokin 32.2 1.1E+02 0.0024 31.6 6.3 46 447-492 255-314 (316)
236 KOG2853 Possible oxidoreductas 31.9 1.5E+02 0.0033 30.9 7.0 63 419-481 36-123 (509)
237 COG2971 Predicted N-acetylgluc 31.5 1.9E+02 0.0041 29.6 7.6 30 9-38 4-33 (301)
238 PRK13324 pantothenate kinase; 30.9 3.2E+02 0.007 27.3 9.2 65 12-99 2-66 (258)
239 cd00012 ACTIN Actin; An ubiqui 30.7 22 0.00047 37.3 0.9 48 447-494 290-348 (371)
240 PRK12379 propionate/acetate ki 30.5 75 0.0016 33.8 4.8 47 423-470 293-342 (396)
241 PF00814 Peptidase_M22: Glycop 30.1 83 0.0018 31.6 5.0 59 420-478 195-255 (268)
242 PRK00180 acetate kinase A/prop 29.4 1.2E+02 0.0026 32.5 6.1 50 422-471 297-349 (402)
243 PF13756 Stimulus_sens_1: Stim 29.1 97 0.0021 26.7 4.5 24 18-41 15-38 (112)
244 COG1214 Inactive homolog of me 28.5 1.1E+02 0.0023 29.9 5.2 64 11-98 2-66 (220)
245 TIGR00016 ackA acetate kinase. 28.0 1.3E+02 0.0029 32.1 6.1 29 11-39 5-35 (404)
246 PF06723 MreB_Mbl: MreB/Mbl pr 27.9 37 0.0008 35.2 2.0 25 12-37 3-27 (326)
247 KOG3530 FERM domain protein EH 27.6 82 0.0018 34.9 4.5 77 455-547 101-177 (616)
248 PF06406 StbA: StbA protein; 27.3 2.2E+02 0.0047 29.3 7.6 45 436-482 262-309 (318)
249 TIGR02707 butyr_kinase butyrat 26.5 1.4E+02 0.0031 31.2 6.1 27 12-38 2-28 (351)
250 PRK14878 UGMP family protein; 26.3 1.1E+02 0.0024 31.6 5.2 74 13-99 1-74 (323)
251 PTZ00288 glucokinase 1; Provis 26.2 2.1E+02 0.0045 30.7 7.3 49 446-494 323-391 (405)
252 PRK13929 rod-share determining 26.1 61 0.0013 33.6 3.3 12 12-23 6-17 (335)
253 COG5012 Predicted cobalamin bi 25.7 85 0.0019 30.6 3.8 48 425-472 163-212 (227)
254 KOG1369 Hexokinase [Carbohydra 25.7 1.4E+02 0.0031 32.5 6.0 59 10-84 86-146 (474)
255 PF07736 CM_1: Chorismate muta 25.6 98 0.0021 27.0 3.8 32 69-100 16-49 (118)
256 cd00529 RuvC_resolvase Hollida 25.4 2.4E+02 0.0051 25.6 6.7 21 12-32 2-22 (154)
257 PRK13329 pantothenate kinase; 24.8 48 0.001 33.0 2.1 18 12-29 3-20 (249)
258 PF06277 EutA: Ethanolamine ut 24.5 55 0.0012 35.5 2.5 16 11-26 4-19 (473)
259 PF04848 Pox_A22: Poxvirus A22 24.2 1.4E+02 0.003 27.0 4.7 25 11-35 2-26 (143)
260 COG4012 Uncharacterized protei 23.6 1.1E+02 0.0023 30.7 4.1 26 11-37 228-253 (342)
261 PLN02666 5-oxoprolinase 23.5 2.1E+02 0.0046 35.4 7.5 86 8-113 7-99 (1275)
262 PRK13927 rod shape-determining 22.7 56 0.0012 33.7 2.2 15 12-26 7-21 (334)
263 PF14397 ATPgrasp_ST: Sugar-tr 21.5 5.6E+02 0.012 25.9 9.1 30 4-34 170-200 (285)
264 COG1647 Esterase/lipase [Gener 21.2 1.3E+02 0.0027 29.6 4.0 33 64-97 61-93 (243)
265 TIGR00749 glk glucokinase, pro 21.2 1.3E+02 0.0029 30.7 4.7 63 422-488 239-316 (316)
266 PRK10719 eutA reactivating fac 21.0 72 0.0016 34.7 2.6 18 11-28 7-24 (475)
267 PF02601 Exonuc_VII_L: Exonucl 20.8 2.6E+02 0.0056 28.6 6.7 31 446-476 75-112 (319)
268 smart00268 ACTIN Actin. ACTIN 20.7 84 0.0018 32.9 3.1 47 448-494 293-348 (373)
269 COG0837 Glk Glucokinase [Carbo 20.4 3.5E+02 0.0075 27.8 7.1 45 448-492 260-318 (320)
270 COG1940 NagC Transcriptional r 20.3 2.4E+02 0.0053 28.6 6.4 42 274-316 108-154 (314)
271 COG0816 Predicted endonuclease 20.2 1.2E+02 0.0026 27.4 3.5 22 10-31 2-23 (141)
272 PRK13326 pantothenate kinase; 20.1 3.4E+02 0.0073 27.2 7.1 24 11-35 7-30 (262)
No 1
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=4.8e-98 Score=816.79 Aligned_cols=484 Identities=19% Similarity=0.263 Sum_probs=446.0
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~ 88 (557)
|+||||+|||++|+++||.+|+++++.+.+|+...|.+|| .||||+ +||++++++++++.+. ..
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~---~e~d~~----------~~~~~~~~~i~~~~~~~~~~- 66 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGM---AEENPE----------EIFEAVLVTIREVSINLEDE- 66 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCC---eeeCHH----------HHHHHHHHHHHHHHHhCCCc-
Confidence 5899999999999999999999999999999877777764 888888 9999999999998765 23
Q ss_pred CCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCCC
Q 008692 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (557)
Q Consensus 89 ~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~~ 168 (557)
.+|.+||||+||+++|+||++|+| |+|+|+|+|+|+.++++++.+.++ .++++++||++
T Consensus 67 ~~I~~Igis~~~~~~v~~D~~g~p--------------------l~~~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~ 125 (505)
T TIGR01314 67 DEILFVSFSTQMHSLIAFDENWQP--------------------LTRLITWADNRAVKYAEQIKESKN-GFDIYRRTGTP 125 (505)
T ss_pred CceEEEEEecccceeEEECCCcCC--------------------cccceeccccchHHHHHHHHhhcC-HHHHHHHHCCC
Confidence 679999999999999999999998 489999999999999999998764 47799999999
Q ss_pred CCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhhhcC
Q 008692 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (557)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~~LP 248 (557)
+++.++++||+|+++|+|++|+|+++|++++|||.|+|||+.+ +|+|+||+|++||+++++|++++++.+|.+ +++||
T Consensus 126 ~~~~~~~~kl~Wl~~~~p~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~-~~~lP 203 (505)
T TIGR01314 126 IHPMAPLSKIIWLEAEHPDIYQKAAKYLEIKGYIFQRLFGTYK-IDYSTASATGMFNLFELDWDKEALELTGIK-ESQLP 203 (505)
T ss_pred CCccchHHHHHHHHHhChhHHHhhcEEECHHHHHHHHHcCCce-eEhhhhhhhcceeCCCCCCCHHHHHhcCCC-HHHCC
Confidence 9999999999999999999999999999999999999999987 999999999999999999999999999943 78999
Q ss_pred CcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcceeecCcc
Q 008692 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFPNPV 328 (557)
Q Consensus 249 ~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~ 328 (557)
+++++++++|+|++++|+++||++||||++|++|++|+++|+|+.++|++++++|||+++.+++++|..++.+..+++.+
T Consensus 204 ~l~~~g~~iG~l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~ 283 (505)
T TIGR01314 204 KLVPTTEIEENLPHEYAKKMGIQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYAL 283 (505)
T ss_pred CCcCcccccCCcCHHHHHHhCCCCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeeccCcCccCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999888877665554456554
Q ss_pred CCCcEEEEEEeechhhHHHHHHHHhcC-----------chHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeee
Q 008692 329 DTKGYMIMLVYKNASLTREDVRNRCAE-----------KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYI 397 (557)
Q Consensus 329 ~~g~~~~~~~~~~~G~~~~W~~~~~~~-----------~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~ 397 (557)
.++.|+.+++++++|.+++||++.+.. ..|+.|+++++++|+|++|++|+|||.|+|+|+
T Consensus 284 ~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~--------- 354 (505)
T TIGR01314 284 TKEHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPL--------- 354 (505)
T ss_pred cCCcEEEEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCC---------
Confidence 457899999999999999999987641 358999999999999999999999999999998
Q ss_pred ecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceE
Q 008692 398 LENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIY 475 (557)
Q Consensus 398 ~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~ 475 (557)
+++.+||+|+||+.. |+++||+||++|||||.+|.+++.+.+ +.++++|+++||++||++|+||+|||+|+||+
T Consensus 355 ~~~~~rg~f~Gl~~~----~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~ 430 (505)
T TIGR01314 355 WNANARGSFFGLTYS----HKKEHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIFEQEIV 430 (505)
T ss_pred CCCCccEEEECCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHcCCeeE
Confidence 889999999999976 799999999999999999999998853 67789999999999999999999999999999
Q ss_pred EecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008692 476 TVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLVEKLG 555 (557)
Q Consensus 476 ~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~l~~~~~ 555 (557)
+.+..|++++|||++|+++ .|.++|++++ +. +.+..++|+|++++ ++.|+++|++|+++|+++++.|+
T Consensus 431 ~~~~~e~~a~GaA~la~~~-----~G~~~~~~~~-~~-~~~~~~~~~P~~~~-----~~~Y~~~y~~y~~~~~~~~~~~~ 498 (505)
T TIGR01314 431 VPESYESSCLGACILGLKA-----LGLIEDFSEV-ST-MVGTTETHTPIEKN-----FEIYREISPIFINLSRSLLAEYE 498 (505)
T ss_pred ecCCCCcchHHHHHHHHHh-----cCccCCHHHH-HH-hcCCCceECcCHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999987 43 55778899999998 99999999999999999999886
Q ss_pred C
Q 008692 556 R 556 (557)
Q Consensus 556 ~ 556 (557)
+
T Consensus 499 ~ 499 (505)
T TIGR01314 499 Q 499 (505)
T ss_pred H
Confidence 4
No 2
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=4.5e-98 Score=812.94 Aligned_cols=479 Identities=20% Similarity=0.281 Sum_probs=438.1
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
++||||+||||+|++|||.+|+++++++++|+..+|.++| +||||+ +||++++++++++.+....++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~---~eqd~~----------~~w~~~~~~~~~l~~~~~~~~ 67 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLW---SEQDPE----------QWWQATDRAMKALGDQHSLQD 67 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCc---cccCHH----------HHHHHHHHHHHHHHHhCCccc
Confidence 4899999999999999999999999999999887777764 888888 999999999999886544567
Q ss_pred eeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCCCCC
Q 008692 91 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGY 170 (557)
Q Consensus 91 I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~~~~ 170 (557)
|.+||||+|+|+++++|++|+| |+|+|+|+|+|+.++++++.+..+ .++++||++++
T Consensus 68 I~aI~is~q~~~~v~~D~~g~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~---~~~~~tG~~~~ 124 (484)
T PRK15027 68 VKALGIAGQMHGATLLDAQQRV--------------------LRPAILWNDGRCAQECALLEARVP---QSRVITGNLMM 124 (484)
T ss_pred eeEEEEecCCCceEEECCCcCC--------------------ccccccccCccHHHHHHHHHHhcc---hhHHHhCCCcC
Confidence 9999999999999999999998 489999999999999999998753 45789999999
Q ss_pred CCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhhhcCCc
Q 008692 171 ERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250 (557)
Q Consensus 171 ~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~~LP~i 250 (557)
+.++++||+|+++|+||+|+|+++|++++|||.|+|||+.+ +|+|+|++|++||+++++|++++++.+|.+ .++||++
T Consensus 125 ~~~~~~kl~Wl~~~~Pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~as~t~l~d~~~~~w~~~ll~~~gi~-~~~lP~v 202 (484)
T PRK15027 125 PGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFA-SDMSDAAGTMWLDVAKRDWSDVMLQACHLS-RDQMPAL 202 (484)
T ss_pred ccchHHHHHHHHHhCHHHHHHhhhhcChHHHHHhhhcCCcc-ccHHHhhcccccccccCCCcHHHHHHhCCC-HHHCCCC
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999933 7899999
Q ss_pred ccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcc--eeecCcc
Q 008692 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEG--HVFPNPV 328 (557)
Q Consensus 251 ~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~--~~~~~~~ 328 (557)
+++++++|+|++++|+++||+ +|||++|++|++|+++|+|++++|++++++|||+++..+++++..++.. ..+++.
T Consensus 203 ~~~~~~~G~l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~- 280 (484)
T PRK15027 203 YEGSEITGALLPEVAKAWGMA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHA- 280 (484)
T ss_pred CCCccccccccHHHHHHhCCC-CCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEecCCcccCchhceeeccee-
Confidence 999999999999999999997 6999999999999999999999999999999999988888876655432 345654
Q ss_pred CCCcEEEEEEeechhhHHHHHHHHhcCchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeecccccccccc
Q 008692 329 DTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDG 408 (557)
Q Consensus 329 ~~g~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~G 408 (557)
.++.|++++.+.++|.+++|+++.++...|+++.+.++++|||++|++|+|||.|||+|+ +++.+||+|+|
T Consensus 281 ~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~---------~~~~arg~f~g 351 (484)
T PRK15027 281 LPQRWHLMSVMLSAASCLDWAAKLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPH---------NNPQAKGVFFG 351 (484)
T ss_pred cCCceEEEEEehhhHHHHHHHHHHhCCccHHHHHHHHhhCCCCCCceEEecccccCCCcC---------CCCCcceEEEC
Confidence 488899999999999999999998865568888788889999999999999999999998 88999999999
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecC-CCchhHH
Q 008692 409 VNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR-PDSASLG 486 (557)
Q Consensus 409 l~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~-~e~~alG 486 (557)
|+.+ |+++||+||++|||||.+|++++.+++ |.++++|+++||++||++|+||+||++|+||++... .+++++|
T Consensus 352 l~~~----~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~G 427 (484)
T PRK15027 352 LTHQ----HGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALG 427 (484)
T ss_pred CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHH
Confidence 9987 799999999999999999999999985 778899999999999999999999999999977654 4588999
Q ss_pred HHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 008692 487 AALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLVEKL 554 (557)
Q Consensus 487 AA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~l~~~~ 554 (557)
||++|+++ .|.++|++++.+ +.+..++|+|++++ ++.|+++|++|+++|++++++|
T Consensus 428 aA~lA~~~-----~G~~~~~~~~~~--~~~~~~~~~P~~~~-----~~~Y~~~~~~y~~~y~~~~~~~ 483 (484)
T PRK15027 428 AARLAQIA-----ANPEKSLIELLP--QLPLEQSHLPDAQR-----YAAYQPRRETFRRLYQQLLPLM 483 (484)
T ss_pred HHHHHHHh-----cCCcCCHHHHHh--hcCCCceECCCHHH-----HHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999 999999998764 23678899999999 9999999999999999998876
No 3
>PLN02669 xylulokinase
Probab=100.00 E-value=2e-96 Score=806.97 Aligned_cols=542 Identities=77% Similarity=1.209 Sum_probs=479.0
Q ss_pred CCCCCCcEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHh
Q 008692 4 YSLPKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (557)
Q Consensus 4 ~~~~~~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~ 83 (557)
-++..++|+||||+|||++|++|||.+|+++++++++|+..+|+.++++++||||+++|.+++++.+||++++.+++++.
T Consensus 2 ~~~~~~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~ 81 (556)
T PLN02669 2 LSLPEDSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA 81 (556)
T ss_pred CCCCCCCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999988888887788999998669999999999999999999987
Q ss_pred hc-CCCCCeeEEEEeccccceEEEcC-CCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHH
Q 008692 84 KS-LDLSKVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALEL 161 (557)
Q Consensus 84 ~~-~~~~~I~aIgis~~~~~~v~vD~-~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~ 161 (557)
++ .+.++|+|||+|+|+|++|+||+ .|+|| .++|++++|.|||+++|+++|+|+|+|+|+.++++++.+.+++.+++
T Consensus 82 ~~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L-~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l 160 (556)
T PLN02669 82 KEKFPFHKVVAISGSGQQHGSVYWRKGASAVL-KSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAEL 160 (556)
T ss_pred HcCCChhhEEEEEecCCcceEEEecCCCCccc-cccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHH
Confidence 65 56778999999999999999999 58884 78899999999999999999999999999999999999988656789
Q ss_pred HHHhCCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCC
Q 008692 162 SKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAP 241 (557)
Q Consensus 162 ~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~ 241 (557)
+++||+++++.|+++||+|+++|+||+|+|+++|+.++|||.|+|||+...+|+|+||+++|||+++++|++++|+.+++
T Consensus 161 ~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sdasg~~l~Di~~~~Ws~~ll~~~~~ 240 (556)
T PLN02669 161 SKLTGSRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETDGAGMNLMDIEKRCWSKAALEATAP 240 (556)
T ss_pred HHHHCCcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchhhhhhhhhccccCCcCHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999963499999999999999999999999999975
Q ss_pred chhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcc
Q 008692 242 SLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEG 321 (557)
Q Consensus 242 ~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~ 321 (557)
++.++||+++++++++|+|++++|+++||++||||++|++|++|+++|+|+.++|++.+++|||+++.++++++.+++.+
T Consensus 241 ~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~~~~~~~~~ 320 (556)
T PLN02669 241 GLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITREPQPSLEG 320 (556)
T ss_pred cHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecCCCCCCCCc
Confidence 44689999999999999999999999999999999999999999999999999999999999999999998888777766
Q ss_pred eeecCccCCCcEEEEEEeechhhHHHHHHHHhcCchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeeccc
Q 008692 322 HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENF 401 (557)
Q Consensus 322 ~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~ 401 (557)
+.++|++.++.|+.++++.+||.+++|+++.+....|+.|+++++++|||++|++++||+.||+.|+...+ ++++
T Consensus 321 ~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~-----~~~~ 395 (556)
T PLN02669 321 HVFPNPVDPESYMVMLCYKNGSLTREDIRNRCADGSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVG-----FHRY 395 (556)
T ss_pred ceeeCccCCCCeEEEEEecchHHHHHHHHHHhccCcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCc-----cchh
Confidence 67878766889999999999999999999998656799999999999999999999999999999973322 4567
Q ss_pred cccccccccccc-----ccCCChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEE
Q 008692 402 EGETLDGVNEVE-----VKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYT 476 (557)
Q Consensus 402 ~~g~~~Gl~~~~-----~~~~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~ 476 (557)
++|.|.|++... ...|+++|++||++||++|++|.+++.|+.+.++++|+++||+|+|++|+||+|||||+||++
T Consensus 396 ~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~ 475 (556)
T PLN02669 396 ILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIATGGASANQSILKLIASIFGCDVYT 475 (556)
T ss_pred hhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEe
Confidence 788888887651 112589999999999999999999999975667899999999999999999999999999999
Q ss_pred ecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhccc--cccee--eccc-ccCchhhHHHHHHHHHHHHHHHHHHH
Q 008692 477 VQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEK--TSLSC--KLAV-TAGDQQLVSKYAVMMKKRLEIENRLV 551 (557)
Q Consensus 477 ~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~--~~~~~--~P~~-~~~~~~~~~~Y~~~y~~y~~l~~~l~ 551 (557)
++..|++++|||++|++++.+++.+.+..+++..+..... ....+ +|.+ +. .+.|..+.++|.++.+.+.
T Consensus 476 ~~~~ea~alGAA~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~y~~~~~~~~~~~~~~~ 550 (556)
T PLN02669 476 VQRPDSASLGAALRAAHGWLCNEQGSFVPISCLYEGKLEATSLSCKLAVKAGDQEL-----LSQYGLLMKKRMEIEQQLV 550 (556)
T ss_pred cCCCCchHHHHHHHHHHHHhhhhhcccCChhhhcccccccCcccceeeccCCCccH-----HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997655434443444433321111 11122 5554 44 8999999999999999988
Q ss_pred HHhcC
Q 008692 552 EKLGR 556 (557)
Q Consensus 552 ~~~~~ 556 (557)
...+|
T Consensus 551 ~~~~~ 555 (556)
T PLN02669 551 EKLGR 555 (556)
T ss_pred HhccC
Confidence 76554
No 4
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=5.4e-94 Score=783.56 Aligned_cols=475 Identities=19% Similarity=0.208 Sum_probs=424.6
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~ 87 (557)
+|+||||+||||+|++|||.+|+++++.+++|+..+|.++| +||||+ .||++++++++++.++ .+
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~---~e~d~~----------~~~~~~~~~~~~~~~~~~~~ 71 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGW---VEHDPN----------EIWASQLSVIAEALAKAGIS 71 (498)
T ss_pred CEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCe---EeeCHH----------HHHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999988888764 889888 9999999999998754 45
Q ss_pred CCCeeEEEEeccccceEEEcCC-CccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhC
Q 008692 88 LSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTG 166 (557)
Q Consensus 88 ~~~I~aIgis~~~~~~v~vD~~-g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG 166 (557)
+++|.+||||+|++++|+||++ |+| |+|+|+|+|+|+.++++++.+. ...++++++||
T Consensus 72 ~~~I~~Igis~~~~~~v~~D~~~G~p--------------------l~~~i~w~D~Ra~~~~~~l~~~-~~~~~~~~~tG 130 (498)
T PRK00047 72 PDQIAAIGITNQRETTVVWDKETGRP--------------------IYNAIVWQDRRTADICEELKRD-GYEDYIREKTG 130 (498)
T ss_pred hhHeeEEEEecCcceEEEEECCCCcC--------------------CcccceecccchHHHHHHHHhc-cchhhHHHhhC
Confidence 6789999999999999999965 998 4899999999999999999876 33356999999
Q ss_pred CCCCCCChHHHHHHHhhhCChhhhcccc----eeechhhHHHHHhCC--cccccccccccccccccCCCCCcHHHHHHcC
Q 008692 167 SRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIGA--YACIDETDAAGMNLMDIRQRVWSKIVLEATA 240 (557)
Q Consensus 167 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~----~l~~~dyl~~~LTG~--~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g 240 (557)
+++++.++++||+|+++|+||+|+++++ |++++|||.|+|||. .+ +|+|+||+|++||+++++|++++|+.+|
T Consensus 131 ~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~As~t~l~d~~~~~W~~ell~~~g 209 (498)
T PRK00047 131 LVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGGKVHV-TDYTNASRTMLFNIHTLDWDDELLELLD 209 (498)
T ss_pred CCCCccchHHHHHHHHHcCHhHHHHHhcCCeEEeChHHhHhhhhcCCCeeE-eechHHhhhhccccccCccCHHHHHhcC
Confidence 9999999999999999999999888764 788999999999965 66 9999999999999999999999999999
Q ss_pred CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceecccc-CCCCCCC
Q 008692 241 PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGIT-DDPEPRL 319 (557)
Q Consensus 241 ~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~ 319 (557)
.+ .++||+|+++++++|+|+++ +|+.+||||++|++|++|+++|+|+.++|++++++|||+++.+.+ ++|..++
T Consensus 210 i~-~~~lP~i~~~g~~~G~v~~~----~~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~ 284 (498)
T PRK00047 210 IP-RSMLPEVRPSSEVYGKTNPY----GFFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSE 284 (498)
T ss_pred CC-HHHCCCccCCcccccccccc----ccCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCC
Confidence 33 68999999999999999987 677799999999999999999999999999999999999877776 4566554
Q ss_pred cc--eeecCccCCC--cEEEEEEeechhhHHHHHHHHhcC-chHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCcee
Q 008692 320 EG--HVFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFH 394 (557)
Q Consensus 320 ~~--~~~~~~~~~g--~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~ 394 (557)
.. ..+++.+ +| .|+.+++++++|.+++|+++.++. ..++++++++++++ +++|++|+|||.|+|+|+
T Consensus 285 ~~~~~~~~~~~-~~~~~~~~~g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~-~~~gl~~lP~l~G~r~P~------ 356 (498)
T PRK00047 285 NGLLTTIAWGI-DGKVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVE-DNDGVYVVPAFTGLGAPY------ 356 (498)
T ss_pred CCceeEEEEEc-CCCcEEEEEeeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCC-CCCCEEEeCccccCCCCC------
Confidence 32 2344433 44 699999999999999999998853 34667788877765 888999999999999998
Q ss_pred eeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcC-C-CCCCCEEEEecCCcchhhHHHHHHHHhCC
Q 008692 395 RYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFG-L-PSPPRRIIATGGASANQTILSCLASIYGC 472 (557)
Q Consensus 395 ~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~-~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~ 472 (557)
+++.+||+|+|++.+ |+++||+||++|||||.+|++++.|+ . |.++++|+++||++||++|+||+|||||+
T Consensus 357 ---~d~~arg~~~Gl~~~----~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~ 429 (498)
T PRK00047 357 ---WDSDARGAIFGLTRG----TTKEHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGV 429 (498)
T ss_pred ---CCCCCcEEEECCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCC
Confidence 899999999999987 79999999999999999999999997 3 77889999999999999999999999999
Q ss_pred ceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 008692 473 DIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLVE 552 (557)
Q Consensus 473 pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~l~~ 552 (557)
||++++..|++++|||++|+++ .|.|++++++ ++ +.+..++|+|++++ ++ |+++|++|+++|+++.+
T Consensus 430 pV~~~~~~e~~a~GaA~~A~~~-----~G~~~~~~~~-~~-~~~~~~~~~P~~~~-----~~-y~~~~~~~~~~~~~~~~ 496 (498)
T PRK00047 430 PVERPVVAETTALGAAYLAGLA-----VGFWKDLDEL-KE-QWKIDRRFEPQMDE-----EE-REKLYAGWKKAVKRTLA 496 (498)
T ss_pred eeEecCcccchHHHHHHHHhhh-----cCcCCCHHHH-Hh-hcCCCeEECCCCCH-----HH-HHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999 9999999987 43 45678899999988 77 99999999999997753
No 5
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=7.7e-94 Score=783.05 Aligned_cols=478 Identities=20% Similarity=0.223 Sum_probs=425.2
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~ 87 (557)
+|+||||+||||+|++|||.+|+++++++++|+...|.+|| +||||+ +||++++++++++.++ ..
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~---~eqd~~----------~~~~~~~~~l~~~~~~~~~~ 68 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGW---LEHDPE----------EILRNVYKCMNEAIKKLREK 68 (504)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCe---EeeCHH----------HHHHHHHHHHHHHHHHcCCC
Confidence 38999999999999999999999999999999987777764 889888 9999999999988765 33
Q ss_pred CC--CeeEEEEeccccceEEEcC-CCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHH
Q 008692 88 LS--KVTAVSGSGQQHGSVYWKK-GSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKL 164 (557)
Q Consensus 88 ~~--~I~aIgis~~~~~~v~vD~-~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~ 164 (557)
+. +|++||||+||+++|+||+ +|+| |+|+|+|+|+|+.++++++.+.++..+.++++
T Consensus 69 ~~~~~I~aIgis~q~~~~v~~D~~~g~p--------------------l~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~ 128 (504)
T PTZ00294 69 GPSFKIKAIGITNQRETVVAWDKVTGKP--------------------LYNAIVWLDTRTYDIVNELTKKYGGSNFFQKI 128 (504)
T ss_pred CccCceEEEEeecCcceEEEEECCCCCC--------------------cccceeecchhhHHHHHHHHhhcCcchHHHHh
Confidence 44 7999999999999999987 5998 48999999999999999999877532567799
Q ss_pred hCCCCCCCChHHHHHHHhhhCChhhhcccc----eeechhhHHHHHhC--CcccccccccccccccccCCCCCcHHHHHH
Q 008692 165 TGSRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEA 238 (557)
Q Consensus 165 tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~As~t~l~d~~~~~W~~~ll~~ 238 (557)
||+++++.++++||+||++|+|++|+++++ +++++|||.|+||| +++ +|+|+||+|++||+++++|++++++.
T Consensus 129 tG~~~~~~~~~~kl~wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~As~tgl~D~~~~~W~~~ll~~ 207 (504)
T PTZ00294 129 TGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTNASRTFLMNIKTLKWDEELLNK 207 (504)
T ss_pred hCCcCCccchHHHHHHHHhcCHHHHHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhhhHHhhccCcccCccCHHHHHH
Confidence 999999999999999999999999997665 99999999999999 887 99999999999999999999999999
Q ss_pred cCCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccC-CCCC
Q 008692 239 TAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITD-DPEP 317 (557)
Q Consensus 239 ~g~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~ 317 (557)
+|.+ +++||+|+++++++|+|++ +.+|+++|+||++|++|++|+++|+|+.++|++.+++|||+++.+.+. .+..
T Consensus 208 ~gi~-~~~LP~v~~~~~~~G~l~~---~~~~~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~ 283 (504)
T PTZ00294 208 FGIP-KETLPEIKSSSENFGTISG---EAVPLLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVF 283 (504)
T ss_pred hCCC-HHHCCCccCCccccCccch---hhcCCCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCcccc
Confidence 9943 7899999999999999994 457889999999999999999999999999999999999998665553 4444
Q ss_pred CCcc--eeecCccC---CCcEEEEEEeechhhHHHHHHHHhcC-chHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCC
Q 008692 318 RLEG--HVFPNPVD---TKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPV 391 (557)
Q Consensus 318 ~~~~--~~~~~~~~---~g~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~ 391 (557)
++.. ..+++.+. ++.|+.++.++++|.+++|+++.++. .+++++++++++++ |++|++|+|||.|+|+|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~~~P~l~G~r~P~--- 359 (504)
T PTZ00294 284 SKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVK-DTGGVVFVPAFSGLFAPY--- 359 (504)
T ss_pred CCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCCCEEEeCcccCCCCCC---
Confidence 4332 23444332 44799999999999999999998753 45778888888875 899999999999999998
Q ss_pred ceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHH
Q 008692 392 GFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASI 469 (557)
Q Consensus 392 g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Adv 469 (557)
+++.+||+|+|++.+ |+++||+||++|||||.+|++++.|++ |.++++|+++||+++|++|+||+||+
T Consensus 360 ------~~~~arg~~~Gl~~~----~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv 429 (504)
T PTZ00294 360 ------WRPDARGTIVGMTLK----TTRAHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADI 429 (504)
T ss_pred ------CCCCCCEEEEccCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHH
Confidence 889999999999987 799999999999999999999999974 67789999999999999999999999
Q ss_pred hCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHH
Q 008692 470 YGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENR 549 (557)
Q Consensus 470 lg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~ 549 (557)
+|+||++++..|++++|||++|+++ .|.|+|++++.+. +.+..++|+|++++ ++ |+++|++|+++|++
T Consensus 430 ~g~pV~~~~~~e~~alGaAl~aa~a-----~G~~~~~~~~~~~-~~~~~~~~~P~~~~-----~~-y~~~~~~~~~~~~~ 497 (504)
T PTZ00294 430 LGKDIVVPEMAETTALGAALLAGLA-----VGVWKSLEEVKKL-IRRSNSTFSPQMSA-----EE-RKAIYKEWNKAVER 497 (504)
T ss_pred hCCceEecCcccchHHHHHHHHHhh-----cCccCCHHHHHHh-ccCCCcEECCCCCH-----HH-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999987642 32256889999999 99 99999999999997
Q ss_pred HH
Q 008692 550 LV 551 (557)
Q Consensus 550 l~ 551 (557)
+.
T Consensus 498 ~~ 499 (504)
T PTZ00294 498 SL 499 (504)
T ss_pred Hh
Confidence 64
No 6
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=3.6e-94 Score=790.63 Aligned_cols=488 Identities=14% Similarity=0.079 Sum_probs=427.9
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~ 88 (557)
++||||+|||++|++|||.+|+++++++++|+..+|.+|| +||||+ +||++++++++++.+. .+.
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~---~eqdp~----------~~~~~~~~~i~~~~~~~~~~~ 67 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGL---EGQSSV----------YIWQAICNCVKQVLAESKVDP 67 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCc---ccCCHH----------HHHHHHHHHHHHHHHHcCCCh
Confidence 3799999999999999999999999999999888888765 888888 9999999999998765 456
Q ss_pred CCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCCC
Q 008692 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (557)
Q Consensus 89 ~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~~ 168 (557)
++|.+||||+| +++|+||++|+||-...|. +| .+|+|+|+|+|+.++++++.+.. ++++++||++
T Consensus 68 ~~I~~Igis~~-~s~v~~D~~g~pl~~~~~~-~~----------~~~~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~ 132 (541)
T TIGR01315 68 NSVKGIGFDAT-CSLVVLTHDGEPLPVSKNG-GA----------DQNIILWMDHRALAEAEKINATN---HNLLRYVGGK 132 (541)
T ss_pred hheEEEEeccc-ccceEEcCCCCeeecCCCC-Cc----------ccceeEeecCcHHHHHHHHHHHH---HHHHHHhCCe
Confidence 78999999999 9999999999995111111 12 27999999999999999998652 4688999999
Q ss_pred CCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccc---cCCCCCcHHHHHHcCCchh-
Q 008692 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMD---IRQRVWSKIVLEATAPSLE- 244 (557)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d---~~~~~W~~~ll~~~g~~~~- 244 (557)
+++.++++||+|+++|+||+|+|+++|++++|||.|+|||+.+ +|+++++.+++|| +++++||+++++.+|.+ .
T Consensus 133 ~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~-~~ 210 (541)
T TIGR01315 133 MSVEMEIPKVLWLKNNMPPELFARCKFFDLTDFLTWRATGKEI-RSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLG-EL 210 (541)
T ss_pred eCcchhHHHHHHHHHhChHHHHHhhhhcchhhhheeeeecchh-HhHhHHhHhhhccccccccCCCCHHHHHHcCCh-hh
Confidence 9999999999999999999999999999999999999999987 9999999888888 69999999999999942 2
Q ss_pred --hh----cCCcccCCccccc-cCHHHHHHcCCCCCCeEEEcCChhhhhhhccCC---CCCC-------cEEEEecccce
Q 008692 245 --EK----LGKLAPAHAVAGC-IAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTL---STSG-------DLAISLGTSDT 307 (557)
Q Consensus 245 --~~----LP~i~~~~~~~G~-l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~---~~~g-------~~~~~~GTs~~ 307 (557)
++ ||+++++++++|+ |++++|+++||++||||++|++|++|+++|+|+ .++| ++.+++|||++
T Consensus 211 ~~~~l~~~lp~i~~~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~ 290 (541)
T TIGR01315 211 VTDNFIRMGGSWMSPGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTC 290 (541)
T ss_pred hhccccccCCcccCCCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceE
Confidence 22 4999999999999 999999999999999999999999999999975 6776 88899999999
Q ss_pred eccccCCCCCCCccee-e-cCccCCCcEEEEEEeechhhHHHHHHHHhcC-------------chHHHHHH----HHhcC
Q 008692 308 VFGITDDPEPRLEGHV-F-PNPVDTKGYMIMLVYKNASLTREDVRNRCAE-------------KSWDVFNK----YLQQT 368 (557)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~-------------~~~~~l~~----~a~~~ 368 (557)
+..+.++|..++.... + ++ ..++.|+.++.++++|.+++||++.+.. ..|+.|++ +++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 369 (541)
T TIGR01315 291 HMAMTKGPVFVPGVWGPYRDA-LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKT 369 (541)
T ss_pred EEEecCCCccCCceeecccCc-cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhc
Confidence 8888877665554322 2 33 3478899999999999999999987531 24644444 45566
Q ss_pred CCC-----CCCeEeEeccCCCCCCCCCCceeeeeecccccccccccccccccCCCh---hhHHHHHHHHHHHHHHHHHHH
Q 008692 369 PPL-----NGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDP---PSEVRALVEGQFLSMRGHAER 440 (557)
Q Consensus 369 ~~g-----~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~---~~l~rAvlEgia~~~r~~~~~ 440 (557)
+|+ ++|++|+|||.|+|+|+ +++.+||+|+||+.+ |++ +||+||++|||||.+|++++.
T Consensus 370 ~~~~~~~~~~gl~flP~l~G~r~P~---------~dp~arG~~~Gl~~~----~~~~~~~~~~rAvlEgiaf~~r~~~e~ 436 (541)
T TIGR01315 370 NAPSISYLVRHFHVYPDLWGNRSPI---------ADPNMRGVIIGLSMD----RSKDGLALLYYATMEFIAYGTRQIVEA 436 (541)
T ss_pred ccCccccCCCceEEccccccCcCCC---------CCCCCceEEECCCCC----CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 58999999999999998 899999999999987 788 899999999999999999999
Q ss_pred cCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccc
Q 008692 441 FGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSL 519 (557)
Q Consensus 441 l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~ 519 (557)
|++ +.++++|+++||++||++|+||+|||+|+||++++..|++++|||++|+++ .|.|+|++++.+. +.+..+
T Consensus 437 l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~-----~G~~~~~~~a~~~-~~~~~~ 510 (541)
T TIGR01315 437 MNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKA-----AGTTESLWDAMDR-MSKPGK 510 (541)
T ss_pred HHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHh-----cCccCCHHHHHHH-hccCCc
Confidence 986 778899999999999999999999999999999999999999999999999 9999999988765 556788
Q ss_pred eeecccccCchhhH-HHHHHHHHHHHHHHHHHHHH
Q 008692 520 SCKLAVTAGDQQLV-SKYAVMMKKRLEIENRLVEK 553 (557)
Q Consensus 520 ~~~P~~~~~~~~~~-~~Y~~~y~~y~~l~~~l~~~ 553 (557)
+|+|++++ + +.|+++|++|+++|++++..
T Consensus 511 ~~~P~~~~-----~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 511 TVWPRGDP-----AKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred EEcCCcch-----hHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998 8 99999999999999888753
No 7
>PLN02295 glycerol kinase
Probab=100.00 E-value=1.5e-93 Score=781.75 Aligned_cols=474 Identities=19% Similarity=0.213 Sum_probs=420.0
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~ 88 (557)
|+||||+|||++|++|||.+|+++++++.+|+..+|++|| +||||+ +||++++++++++.++ .++
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~---~Eqdp~----------~~w~~~~~~i~~~~~~~~~~~ 67 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGW---VEHDPM----------EILESVLTCIAKALEKAAAKG 67 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCc---EeeCHH----------HHHHHHHHHHHHHHHHcCCCc
Confidence 5899999999999999999999999999999988888875 899998 9999999999997764 445
Q ss_pred CC----eeEEEEeccccceEEE-cCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCC-hHHHH
Q 008692 89 SK----VTAVSGSGQQHGSVYW-KKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGG-ALELS 162 (557)
Q Consensus 89 ~~----I~aIgis~~~~~~v~v-D~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~-~~~~~ 162 (557)
++ |.+||+|+||+++|+| |++|+| |+|+|+|+|+|+.++++++.+.+++ .+.++
T Consensus 68 ~~i~~~i~aIg~s~q~~~~v~~dd~~G~p--------------------l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~ 127 (512)
T PLN02295 68 HNVDSGLKAIGITNQRETTVAWSKSTGRP--------------------LYNAIVWMDSRTSSICRRLEKELSGGRKHFV 127 (512)
T ss_pred cccccceEEEEEecCcceEEEEECCCCCC--------------------cccceeccccchHHHHHHHHhhccchhHHHH
Confidence 55 8999999999999999 589998 4899999999999999999987532 34577
Q ss_pred HHhCCCCCCCChHHHHHHHhhhCChhhhcc----cceeechhhHHHHHhC-----CcccccccccccccccccCCCCCcH
Q 008692 163 KLTGSRGYERFTGPQIRKLFQTQPGVYDDT----ERISVVSSFMASLLIG-----AYACIDETDAAGMNLMDIRQRVWSK 233 (557)
Q Consensus 163 ~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~----~~~l~~~dyl~~~LTG-----~~~~~d~s~As~t~l~d~~~~~W~~ 233 (557)
++||+++++.++++||+||++|+||+|+|+ .+|++++|||.|+||| +++ +|+|+||+|++||+++++|++
T Consensus 128 ~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~-td~s~As~t~l~D~~~~~W~~ 206 (512)
T PLN02295 128 ETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHV-TDVTNASRTMLMNLKTLDWDK 206 (512)
T ss_pred HhhCCcCCcccHHHHHHHHHhcCHHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEE-eeHHHhHHhhccCcccCcCCH
Confidence 999999999999999999999999999554 5899999999999999 666 999999999999999999999
Q ss_pred HHHHHcCCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccC
Q 008692 234 IVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITD 313 (557)
Q Consensus 234 ~ll~~~g~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~ 313 (557)
++++.+|.+ +++||+++++++++|+|++++++ +||||++|++|++|+++|+|+ ++|++.+++||++++.+.++
T Consensus 207 ell~~~gi~-~~~lP~l~~~~~~~G~v~~~~a~-----~g~pV~~g~~D~~aa~~G~G~-~~g~~~~~~GTs~~i~~~~~ 279 (512)
T PLN02295 207 PTLEALGIP-AEILPKIVSNSEVIGTIAKGWPL-----AGVPIAGCLGDQHAAMLGQRC-RPGEAKSTYGTGCFILLNTG 279 (512)
T ss_pred HHHHHcCCC-HHHCCCcccCccceecccccccc-----CCCcEEEEechHHHHHhhCcC-CCCCeEEEEcccceeeeecC
Confidence 999999943 78999999999999999998865 499999999999999999999 99999999999998766665
Q ss_pred C-CCCCCc--ceeecCcc---CCCcEEEEEEeechhhHHHHHHHHhcC-chHHHHHHHHhcCCCCCCCeEeEeccCCCCC
Q 008692 314 D-PEPRLE--GHVFPNPV---DTKGYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEIL 386 (557)
Q Consensus 314 ~-~~~~~~--~~~~~~~~---~~g~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~ 386 (557)
. +..++. ...+++.. .++.|+.+++++++|.+++||++.++. .+++++++++++++ |++|++|+|||.|+|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~gl~f~P~l~G~r~ 358 (512)
T PLN02295 280 EEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVD-DTGGVYFVPAFSGLFA 358 (512)
T ss_pred CccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCCceEEeCcccCCCC
Confidence 4 333332 22333322 278899999999999999999998853 35778888887775 8889999999999999
Q ss_pred CCCCCceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--C-----CCCCEEEEecCCcch
Q 008692 387 PPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--P-----SPPRRIIATGGASAN 459 (557)
Q Consensus 387 P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~-----~~~~~i~~~GGga~s 459 (557)
|+ +++.+||+|+||+.. |+++||+||++|||||.+|++++.|++ + .++++|+++||+++|
T Consensus 359 P~---------~~~~arg~~~Gl~~~----~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s 425 (512)
T PLN02295 359 PR---------WRDDARGVCVGITRF----TNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATAN 425 (512)
T ss_pred Cc---------CCCCCCEEEECCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhC
Confidence 98 899999999999987 799999999999999999999999873 2 268899999999999
Q ss_pred hhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHH
Q 008692 460 QTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVM 539 (557)
Q Consensus 460 ~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~ 539 (557)
++|+||+|||+|+||++++..|++++|||++|+++ .|.|++++++.+. +.+..++|+|++++ ++ |+++
T Consensus 426 ~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~-----~G~~~~~~~~~~~-~~~~~~~~~P~~~~-----~~-y~~~ 493 (512)
T PLN02295 426 NLLMQIQADLLGSPVVRPADIETTALGAAYAAGLA-----VGLWTEEEIFASE-KWKNTTTFRPKLDE-----EE-RAKR 493 (512)
T ss_pred HHHHHHHHHhcCCceEecCccccHHHHHHHHHHhh-----cCcCCCHHHHHHh-ccCCCeEECCCCCH-----HH-HHHH
Confidence 99999999999999999999999999999999999 9999998876543 55778899999998 88 9999
Q ss_pred HHHHHHHHHHHH
Q 008692 540 MKKRLEIENRLV 551 (557)
Q Consensus 540 y~~y~~l~~~l~ 551 (557)
|++|+++|++..
T Consensus 494 y~~~~~~~~~~~ 505 (512)
T PLN02295 494 YASWCKAVERSF 505 (512)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 8
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=4.6e-93 Score=779.78 Aligned_cols=485 Identities=17% Similarity=0.178 Sum_probs=429.1
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCC--CCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSE--LPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~--~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~-- 85 (557)
+|+||||+||||+|++|||.+|+++++.+++|+.. .+.+| ++||||+ +||++++++++++.++
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g---~~Eqd~~----------~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPG---SMEFDLE----------KNWQLACQCIRQALQKAG 69 (520)
T ss_pred cEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCC---CeeECHH----------HHHHHHHHHHHHHHHHcC
Confidence 49999999999999999999999999999988644 23444 3777777 9999999999998754
Q ss_pred CCCCCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCC-hHHHHHH
Q 008692 86 LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGG-ALELSKL 164 (557)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~-~~~~~~~ 164 (557)
..+++|.+||+|+||+++|+||++|+|| .+ ++|+|+|+.++++++.+..+. .++++++
T Consensus 70 ~~~~~I~aI~~s~~~~~~v~~D~~g~pl--------------------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~ 128 (520)
T PRK10939 70 IPASDIAAVSATSMREGIVLYDRNGTEI--------------------WA-CANVDARASREVSELKELHNNFEEEVYRC 128 (520)
T ss_pred CCccceEEEEEECCcccEEEECCCCCEe--------------------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHH
Confidence 4567899999999999999999999984 33 679999999999999887542 3578999
Q ss_pred hCCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchh
Q 008692 165 TGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLE 244 (557)
Q Consensus 165 tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~ 244 (557)
||.++ +.++++||+|+++|+||+|+|+++|++++|||.|+|||+++ +|+|+||+|+|||+++++|++++++.+|++ .
T Consensus 129 tG~~~-~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~As~tgl~d~~~~~W~~~ll~~~gi~-~ 205 (520)
T PRK10939 129 SGQTL-ALGALPRLLWLAHHRPDIYRQAHTITMISDWIAYMLSGELA-VDPSNAGTTGLLDLVTRDWDPALLEMAGLR-A 205 (520)
T ss_pred hCCcC-CcchHHHHHHHHHcCcHHHHHhheEechhHhhhheeeCcee-eEhhhhhceeeeecCCCCCCHHHHHHcCCC-H
Confidence 99875 67899999999999999999999999999999999999997 999999999999999999999999999943 7
Q ss_pred hhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcc--e
Q 008692 245 EKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEG--H 322 (557)
Q Consensus 245 ~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~--~ 322 (557)
++||+|+++++++|+|++++|+++||++||||++|++|++|+++|+|+.++|++++++|||+++...++++..++.. .
T Consensus 206 ~~lP~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~ 285 (520)
T PRK10939 206 DILPPVKETGTVLGHVTAKAAAETGLRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPAPVTDPNMNIR 285 (520)
T ss_pred HHCCCCccCCceeeeecHHHHHhhCCCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccccccCccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999888877776555432 2
Q ss_pred eecCccCCCcEEEEEEeechhhHHHHHHHHhcC-----------chHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCC
Q 008692 323 VFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE-----------KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPV 391 (557)
Q Consensus 323 ~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~-----------~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~ 391 (557)
.+++. .+|.|..++.++++|.+++||++.+.. ..|+.|+++++++|||++|+ +|||.|++.|+
T Consensus 286 ~~~~~-~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~--- 359 (520)
T PRK10939 286 INPHV-IPGMVQAESISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFK--- 359 (520)
T ss_pred eceee-eCCcceEeeeeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCC---
Confidence 34443 478899999999999999999997642 35899999999999999887 59999998765
Q ss_pred ceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHH
Q 008692 392 GFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASI 469 (557)
Q Consensus 392 g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Adv 469 (557)
+.+.+||+|+|++.+... |+++||+||++|||||.+|.+++.+++ +.++++|+++||+++|++|+||+|||
T Consensus 360 ------~~~~~~g~f~Gl~~~~~~-~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv 432 (520)
T PRK10939 360 ------SWYHAAPSFINLSIDPEK-CNKATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADV 432 (520)
T ss_pred ------CCcccceeEEccccCccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHh
Confidence 234689999999875000 289999999999999999999999874 67889999999999999999999999
Q ss_pred hCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHH
Q 008692 470 YGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENR 549 (557)
Q Consensus 470 lg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~ 549 (557)
+|+||++++..|++++|||++|+++ .|.|+|++++.+. +.+..++|+|++++ ++.|+++|++|+++|++
T Consensus 433 lg~pV~~~~~~e~~alGaA~lA~~~-----~G~~~~~~~a~~~-~~~~~~~~~P~~~~-----~~~y~~~y~~y~~l~~~ 501 (520)
T PRK10939 433 TGLPVKVPVVKEATALGCAIAAGVG-----AGIYSSLAETGER-LVRWERTFEPNPEN-----HELYQEAKEKWQAVYAD 501 (520)
T ss_pred cCCeeEEecccCchHHHHHHHHHHH-----hCCCCCHHHHHHH-HcccCceECcCHHH-----HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999998765 55678899999998 99999999999999999
Q ss_pred HHHHhc
Q 008692 550 LVEKLG 555 (557)
Q Consensus 550 l~~~~~ 555 (557)
+++.-+
T Consensus 502 ~~~~~~ 507 (520)
T PRK10939 502 QLGLVD 507 (520)
T ss_pred HHHHHc
Confidence 876543
No 9
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.8e-92 Score=777.32 Aligned_cols=493 Identities=15% Similarity=0.167 Sum_probs=429.2
Q ss_pred EEEEEEccCCceEEEEEc-CCCCEEEEEeeeccC-----CCCCCCC---CCceeeCCCCCCCccCChhHHHHHHHHHHHH
Q 008692 11 LFLGFDSSTQSLKATVLD-SNLNIVASEQLQFDS-----ELPHYKT---KDGVYRDPSNNGRIVSPTLMWIEALDLMLQK 81 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d-~~G~~v~~~~~~~~~-----~~p~~g~---~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~ 81 (557)
|+||||+||||+|++||| .+|+++++++++|++ .+|+++. ++++||||+ +||+++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~----------~~w~~~~~~~~~ 71 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPA----------DYIEVLEAAIPT 71 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHH----------HHHHHHHHHHHH
Confidence 799999999999999999 899999999999984 4565321 123666666 999999999999
Q ss_pred Hhhc--CCCCCeeEEEEeccccceEEEcCCCccccc-cCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhC-C
Q 008692 82 LSKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILS-SLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVG-G 157 (557)
Q Consensus 82 l~~~--~~~~~I~aIgis~~~~~~v~vD~~g~pl~~-~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~-~ 157 (557)
+.++ .++++|++||||+|++++|+||++|+||-. +.+.+.|. .++|+|+|+|+.+++++|++... +
T Consensus 72 ~~~~~~~~~~~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~----------~~~i~W~D~Ra~~~~~~l~~~~~~~ 141 (536)
T TIGR01234 72 VLAELGVDPADVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPH----------AYFKLWKHHAAQEEADRINRLAHAP 141 (536)
T ss_pred HHHHcCCCHHHEEEEEEecCcceeEEECCCCCEeecccccccCcc----------cceeeeccCCcHHHHHHHHHHhhcc
Confidence 8765 445679999999999999999999998510 00000010 13999999999999999988752 1
Q ss_pred hHHHHHHhCCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHH
Q 008692 158 ALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLE 237 (557)
Q Consensus 158 ~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~ 237 (557)
.+.++++||+++++.++++||+|+++|+||+|+|+++|++++|||.|+|||+.+ +|+|+|+.++++|...+.|++++++
T Consensus 142 ~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~a~~~~l~~~~w~~~~~~~l~ 220 (536)
T TIGR01234 142 GEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADRWIELADWIVAQLSGDIR-RGRCTAGYKALWHESWGYPSASFFD 220 (536)
T ss_pred chhHHHhhCCccCchhHHHHHHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcc-ccchhcccceeccccccCCCHHHHH
Confidence 367889999999999999999999999999999999999999999999999997 9999999998887766666999999
Q ss_pred HcCC------chhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccc
Q 008692 238 ATAP------SLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGI 311 (557)
Q Consensus 238 ~~g~------~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~ 311 (557)
.+|+ + +++||+|+++++++|+|++++|+++||++|+||++|++|++|+++|+|+.++|++++++|||+++..+
T Consensus 221 ~~g~~~~~~lp-~~~~p~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~ 299 (536)
T TIGR01234 221 ELNPILNRHLP-DKLFTDIWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLI 299 (536)
T ss_pred Hhcchhhhhhh-hhcCCceecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEe
Confidence 9983 2 57899999999999999999999999999999999999999999999999999999999999998777
Q ss_pred cCCCCCCCcceeecCc----cCCCcEEEEEEeechhhHHHHHHHHhcC------------chHHHHHHHHhcCCCCCCCe
Q 008692 312 TDDPEPRLEGHVFPNP----VDTKGYMIMLVYKNASLTREDVRNRCAE------------KSWDVFNKYLQQTPPLNGGK 375 (557)
Q Consensus 312 ~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~G~~~~W~~~~~~~------------~~~~~l~~~a~~~~~g~~gl 375 (557)
.+++...+. +++. ..++.|..++.++++|.+++||++.+.. ..|+.|++.++++|||++||
T Consensus 300 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gl 376 (536)
T TIGR01234 300 GDKQRAVPG---MCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGL 376 (536)
T ss_pred cCccccCCc---eeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCe
Confidence 765443222 2221 2367898999999999999999998731 24889999999999999999
Q ss_pred EeEeccCCCCCCCCCCceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEec
Q 008692 376 MGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATG 454 (557)
Q Consensus 376 ~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~G 454 (557)
+|+|||.|||+|+ +++.+||+|.|++.. |+++||+||++|||||.+|++++.|++ |.++++|+++|
T Consensus 377 lflP~l~Ger~P~---------~d~~arG~~~Gl~~~----~~~~~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~G 443 (536)
T TIGR01234 377 VALDWFNGNRSPL---------VDQRLKGVITGLTLA----TDAPLLYRALIEATAFGTRMIMETFTDSGVPVEELMAAG 443 (536)
T ss_pred EecchhccCCCCC---------CCCcceEEEECCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeC
Confidence 9999999999998 899999999999987 799999999999999999999999986 77889999999
Q ss_pred CC-cchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcc-cccceeecccccCchhh
Q 008692 455 GA-SANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLE-KTSLSCKLAVTAGDQQL 532 (557)
Q Consensus 455 Gg-a~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~-~~~~~~~P~~~~~~~~~ 532 (557)
|+ ++|++|+||+||+||+||++++..|++++|||++|+++ .|.|++++++.+. +. ...++|+|++++
T Consensus 444 Gg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~-----~G~~~~~~~~~~~-~~~~~~~~~~P~~~~----- 512 (536)
T TIGR01234 444 GIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVA-----AGVYADIPSAQAK-MGSAVEKTLTPCSEN----- 512 (536)
T ss_pred CccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHHHHH-----cCCcCCHHHHHHH-hhccCCceECCChhH-----
Confidence 99 99999999999999999999999999999999999999 9999999988765 43 557889999988
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008692 533 VSKYAVMMKKRLEIENRLVE 552 (557)
Q Consensus 533 ~~~Y~~~y~~y~~l~~~l~~ 552 (557)
++.|+++|++|+++|++.-+
T Consensus 513 ~~~y~~~y~~y~~l~~~~~~ 532 (536)
T TIGR01234 513 AQRYEQLYARYQELAMSFGQ 532 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999987643
No 10
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=1.7e-92 Score=780.37 Aligned_cols=492 Identities=16% Similarity=0.170 Sum_probs=427.5
Q ss_pred cEEEEEEccCCceEEEEEcC-CCCEEEEEeeeccCC------CCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHH
Q 008692 10 SLFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSE------LPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~------~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l 82 (557)
+|+||||+||||+|++|||. +|+++++++++|+.. +|.+|| +||||+ +||++++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~---~Eqdp~----------~~w~~~~~~i~~~ 69 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQ---ALQHPL----------DYIESLEAAIPAV 69 (548)
T ss_pred cEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCc---eeeCHH----------HHHHHHHHHHHHH
Confidence 48999999999999999995 999999999999853 355443 566666 9999999999997
Q ss_pred hhc--CCCCCeeEEEEeccccceEEEcCCCccccccCCC-CCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCC-h
Q 008692 83 SKS--LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDP-KKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGG-A 158 (557)
Q Consensus 83 ~~~--~~~~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~-~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~-~ 158 (557)
.++ .++.+|.+||||+|++++|+||++|+||-...+. ..| ..|+|+|+|+|+.++++++.+..+. .
T Consensus 70 ~~~~~~~~~~I~aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p----------~~~~i~W~D~Ra~~~~~~l~~~~~~~~ 139 (548)
T PRK04123 70 LKEAGVDPAAVVGIGVDFTGSTPAPVDADGTPLALLPEFAENP----------HAMVKLWKDHTAQEEAEEINRLAHERG 139 (548)
T ss_pred HHHcCCChhhEEEEEEecccceeEEECCCCCEeecccccccCc----------ccceeEeccCCHHHHHHHHHHHhccch
Confidence 754 5567899999999999999999999985100010 112 2489999999999999999887531 2
Q ss_pred HHHHHHh-CCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhC-----CcccccccccccccccccC-CCCC
Q 008692 159 LELSKLT-GSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIG-----AYACIDETDAAGMNLMDIR-QRVW 231 (557)
Q Consensus 159 ~~~~~~t-G~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG-----~~~~~d~s~As~t~l~d~~-~~~W 231 (557)
+++++.+ |+++++.++++||+||++|+||+|+|+++|++++|||.|+||| ..+ +|.++++.+++||.+ +..|
T Consensus 140 ~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~-~~~~~as~~~~~d~~~~~~~ 218 (548)
T PRK04123 140 EADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIV-RSRCAAGHKALWHESWGGLP 218 (548)
T ss_pred hhHHHHhcCCccCcchHHHHHHHHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCccccc-cchhhcccccccccccCCCC
Confidence 5577655 9999999999999999999999999999999999999999999 666 899999999999999 5566
Q ss_pred cHHHHHHcC------CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEeccc
Q 008692 232 SKIVLEATA------PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTS 305 (557)
Q Consensus 232 ~~~ll~~~g------~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs 305 (557)
|+++|+.+| .+ .++||+|+++++++|+|++++|+++||++|+||++|+||++|+++|+|+ ++|++++++||+
T Consensus 219 s~ell~~~g~~l~~~i~-~~llP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~-~~g~~~~~~GTs 296 (548)
T PRK04123 219 SADFFDALDPLLARGLR-DKLFTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA-EPGTLVKVMGTS 296 (548)
T ss_pred CHHHHHHhccchhhhhH-hhcCCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-CCCcEEEEecCc
Confidence 999999996 32 5789999999999999999999999999999999999999999999999 999999999999
Q ss_pred ceeccccCCCCCCCcc-eeecCccCCCcEEEEEEeechhhHHHHHHHHhcC------------chHHHHHHHHhcCCCCC
Q 008692 306 DTVFGITDDPEPRLEG-HVFPNPVDTKGYMIMLVYKNASLTREDVRNRCAE------------KSWDVFNKYLQQTPPLN 372 (557)
Q Consensus 306 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~------------~~~~~l~~~a~~~~~g~ 372 (557)
+++..+++++...+.. ..+.....++.|.+++.++++|.+++||++.++. ..|+.|+++++++|||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~ 376 (548)
T PRK04123 297 TCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGE 376 (548)
T ss_pred eEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCC
Confidence 9988888766432221 0111112367899999999999999999998731 35899999999999999
Q ss_pred CCeEeEeccCCCCCCCCCCceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEE
Q 008692 373 GGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRII 451 (557)
Q Consensus 373 ~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~ 451 (557)
+|++|+|||.|||+|+ +++.+||+|+|++.. |+++||+||++|||+|.+|++++.|++ +.++++|+
T Consensus 377 ~gl~f~P~l~Ger~P~---------~~~~arg~~~Gl~~~----~~~~~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~ 443 (548)
T PRK04123 377 HGLVALDWFNGRRTPL---------ADQRLKGVITGLTLG----TDAPDIYRALIEATAFGTRAIMECFEDQGVPVEEVI 443 (548)
T ss_pred CceEEcccccCCCCCC---------CCCCCceEEECCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 9999999999999998 899999999999987 799999999999999999999999986 77889999
Q ss_pred EecCC-cchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCch
Q 008692 452 ATGGA-SANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQ 530 (557)
Q Consensus 452 ~~GGg-a~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~ 530 (557)
++||+ +||++|+||+||+||+||++++..|++++|||++|+++ .|.|+|++++.+.+.....++|+|+++.
T Consensus 444 ~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~-----~G~~~~~~~~~~~~~~~~~~~~~P~~~~--- 515 (548)
T PRK04123 444 AAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVA-----AGAYPDIPEAQQAMASPVEKTYQPDPEN--- 515 (548)
T ss_pred EeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHHHHH-----hccCCCHHHHHHHhhccCceEEecCHHH---
Confidence 99999 99999999999999999999999999999999999999 9999999988765222455789999988
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 008692 531 QLVSKYAVMMKKRLEIENRL 550 (557)
Q Consensus 531 ~~~~~Y~~~y~~y~~l~~~l 550 (557)
++.|+++|++|+++|+.+
T Consensus 516 --~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 516 --VARYEQLYQEYKQLHDYF 533 (548)
T ss_pred --HHHHHHHHHHHHHHHHHh
Confidence 999999999999999876
No 11
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=2.5e-91 Score=761.74 Aligned_cols=473 Identities=19% Similarity=0.205 Sum_probs=424.4
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~ 87 (557)
+|+||||+|||++|++|||.+|+++++.+++++..+|.+|| +||||+ +||++++++++++.++ ..
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~---~e~d~~----------~~~~~i~~~i~~~~~~~~~~ 67 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGW---VEHDPM----------EIWESVLSCIAEALAKAGIK 67 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCc---EeeCHH----------HHHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999999999999887788765 888888 9999999999998754 45
Q ss_pred CCCeeEEEEeccccceEEEcCC-CccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhC
Q 008692 88 LSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTG 166 (557)
Q Consensus 88 ~~~I~aIgis~~~~~~v~vD~~-g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG 166 (557)
+++|.+||||+|++++|+||++ |+| |+|+|+|+|+|+.+++++|.+.++ .++++++||
T Consensus 68 ~~~i~aIgis~~~~~~v~~D~~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG 126 (493)
T TIGR01311 68 PDDIAAIGITNQRETTVVWDKATGKP--------------------LYNAIVWQDRRTASICEELKAEGY-GEFIREKTG 126 (493)
T ss_pred hhheeEEEEecCcceEEEEECCCCcC--------------------cccceeecccchHHHHHHHHHhcc-hHHHHHHhC
Confidence 6789999999999999999976 998 489999999999999999998775 378999999
Q ss_pred CCCCCCChHHHHHHHhhhCChhhhcccc----eeechhhHHHHHhC--CcccccccccccccccccCCCCCcHHHHHHcC
Q 008692 167 SRGYERFTGPQIRKLFQTQPGVYDDTER----ISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEATA 240 (557)
Q Consensus 167 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~----~l~~~dyl~~~LTG--~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g 240 (557)
+++++.++++||+|+++|+||+|+|+++ |++++|||.|+||| +.+ +|+|+||+|+|||+++++|++++++.+|
T Consensus 127 ~~~~~~~~~~kl~wlk~~~Pe~~~~~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~As~t~l~d~~~~~W~~~~l~~~g 205 (493)
T TIGR01311 127 LPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGGKVHV-TDVTNASRTMLFNIHTLDWDDELLELFG 205 (493)
T ss_pred CcCCccchHHHHHHHHhcCHHHHHHhhcCCeEEECHhHhhhhhccCCceEE-eccchhhhhhcccccccccCHHHHHHcC
Confidence 9999999999999999999999998864 88999999999999 887 9999999999999999999999999999
Q ss_pred CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccC-CCCCCC
Q 008692 241 PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITD-DPEPRL 319 (557)
Q Consensus 241 ~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~~~ 319 (557)
.+ +++||+|+++++++|+|+++ |+++||||++|++|++|+++|+|+.++|++++++|||+++.+.+. .+..++
T Consensus 206 i~-~~~lP~l~~~g~~~G~v~~~-----~l~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~ 279 (493)
T TIGR01311 206 IP-REILPEVRSSSEVYGYTDPG-----LLGAEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISK 279 (493)
T ss_pred CC-HHHCCCccCCccceeccccc-----ccCCCceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCC
Confidence 43 78999999999999999987 777999999999999999999999999999999999988665554 344433
Q ss_pred c--ceeecCccCCC---cEEEEEEeechhhHHHHHHHHhcC-chHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCce
Q 008692 320 E--GHVFPNPVDTK---GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGF 393 (557)
Q Consensus 320 ~--~~~~~~~~~~g---~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~ 393 (557)
. ...+++.+ ++ .|+.++++.++|.+++||++.++. ..++++++++++++ |++|++|+|||.|+|+|+
T Consensus 280 ~~~~~~~~~~~-~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~-g~~g~~~~P~l~G~r~P~----- 352 (493)
T TIGR01311 280 HGLLTTVAYQL-GGKKPVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVE-DNGGVYFVPAFTGLGAPY----- 352 (493)
T ss_pred CCceEEEEEec-CCCCceEEEEeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCC-CCCCEEEeCcccCCCCCc-----
Confidence 2 22345443 33 399999999999999999998863 45778888887765 889999999999999998
Q ss_pred eeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhC
Q 008692 394 HRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG 471 (557)
Q Consensus 394 ~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg 471 (557)
+++.+||+|+|++.. |+++||+||++|||||.+|.+++.|++ +.++++|+++||++||++|+||+|||+|
T Consensus 353 ----~~~~arg~~~Gl~~~----~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g 424 (493)
T TIGR01311 353 ----WDPDARGAIFGLTRG----TTKAHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILG 424 (493)
T ss_pred ----CCCCCcEEEECcCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcC
Confidence 789999999999987 799999999999999999999999973 6778999999999999999999999999
Q ss_pred CceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHHHH
Q 008692 472 CDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLV 551 (557)
Q Consensus 472 ~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~l~ 551 (557)
+||++++..|++++|||++|+++ .|.|.|++++ ++ +.+..++|+|++++ ++ |+++|++|+++|+++.
T Consensus 425 ~pv~~~~~~e~~alGaA~~a~~~-----~G~~~~~~~a-~~-~~~~~~~~~P~~~~-----~~-y~~~~~~~~~~~~~~~ 491 (493)
T TIGR01311 425 VPVVRPKVTETTALGAAYAAGLA-----VGYWKSLEEI-EA-LWRVEKTFEPEMDE-----EE-REARYAGWKEAVKRSL 491 (493)
T ss_pred CeeEecCCCcchHHHHHHHHHhh-----cCcCCCHHHH-HH-hcCCCcEECCCCCH-----HH-HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 9999999987 44 45778899999988 77 9999999999999763
No 12
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=1.8e-91 Score=758.59 Aligned_cols=458 Identities=17% Similarity=0.144 Sum_probs=402.3
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccC--CCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDS--ELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~--~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~ 87 (557)
+|+||||+||||+|++|||.+|+++++++++++. ..|.++| +||||+ +||++++++++++.++..
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~---~eqd~~----------~~w~~~~~~~~~~~~~~~ 68 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDW---HQWSLD----------AILQRFADCCRQINSELT 68 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCC---cccCHH----------HHHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999999999998763 3445543 677776 999999999999876533
Q ss_pred CCCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCC
Q 008692 88 LSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGS 167 (557)
Q Consensus 88 ~~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~ 167 (557)
..+|.+||||+|++++++||++|+| |+|+|+|+|+|+.++++++.+.++ .++++++||+
T Consensus 69 ~~~I~~I~is~~~~~~v~~D~~G~p--------------------l~p~i~w~D~Ra~~~~~~l~~~~~-~~~~~~~tG~ 127 (470)
T PRK10331 69 ECHIRGITVTTFGVDGALVDKQGNL--------------------LYPIISWKCPRTAAVMENIERYIS-AQQLQQISGV 127 (470)
T ss_pred ccceEEEEEeccccceEEECCCcCC--------------------ccCceeecCCCcHHHHHHHHHhcC-HHHHHhhhCC
Confidence 4679999999999999999999998 489999999999999999998764 5778999999
Q ss_pred CCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhhhc
Q 008692 168 RGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKL 247 (557)
Q Consensus 168 ~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~~L 247 (557)
++.+.++++||+|+++|+||+|+|+++|++++|||.|||||+.+ +|+|+||.|++||+++++|++++++.+|.+ +++|
T Consensus 128 ~~~~~~~~~Kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~ell~~~gi~-~~~l 205 (470)
T PRK10331 128 GAFSFNTLYKLVWLKENHPQLLEQAHAWLFISSLINHRLTGEFT-TDITMAGTSQMLDIQQRDFSPEILQATGLS-RRLF 205 (470)
T ss_pred CccccchHHHHHHHHHhCHHHHHHhhhhcCHHHHHHHhhcCccc-cchhhccceeeeecccCCCCHHHHHHcCCC-HHHC
Confidence 99999999999999999999999999999999999999999997 999999999999999999999999999943 7899
Q ss_pred CCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCc----cee
Q 008692 248 GKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLE----GHV 323 (557)
Q Consensus 248 P~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~----~~~ 323 (557)
|+++++++++|+|++++|+++||++||||++|++|++|+++|+|+ .+|++++++|||+++..++++|..+.. ...
T Consensus 206 P~i~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~ 284 (470)
T PRK10331 206 PRLVEAGEQIGTLQPSAAALLGLPVGIPVISAGHDTQFALFGSGA-GQNQPVLSSGTWEILMVRSAQVDTSLLSQYAGST 284 (470)
T ss_pred CCcccccccccccCHHHHHHhCCCCCCeEEEccccHHHHHhCCCC-CCCCEEEecchhhhheeecCCCcccccccccccc
Confidence 999999999999999999999999999999999999999999998 789999999999998887776655432 111
Q ss_pred ecCccCCCcEEEEEEeechhhHHHHHHHHhc--CchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeeccc
Q 008692 324 FPNPVDTKGYMIMLVYKNASLTREDVRNRCA--EKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENF 401 (557)
Q Consensus 324 ~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~--~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~ 401 (557)
......++.|..++...++| +++|+++.+. ...|+.|+++++++|||++|++|+|||.|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~g~-~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~---------------- 347 (470)
T PRK10331 285 CELDSQSGLYNPGMQWLASG-VLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ---------------- 347 (470)
T ss_pred eeccccCceeeechhhHHHH-HHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC----------------
Confidence 11122356666555444444 8999999885 2468999999999999999999999998875
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecC
Q 008692 402 EGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR 479 (557)
Q Consensus 402 ~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~ 479 (557)
||+|+||+.. |+++||+||++|||||++|++++.|++ +.++++|+++||++||++|+||+|||||+||++++.
T Consensus 348 -rg~~~Gl~~~----~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~ 422 (470)
T PRK10331 348 -NAGWQGVTLN----TTRGHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD 422 (470)
T ss_pred -ceeEECCCCC----cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc
Confidence 4667778765 799999999999999999999999975 357899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHH
Q 008692 480 PDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAV 538 (557)
Q Consensus 480 ~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~ 538 (557)
.|++++|||++|+++ .|.|+|++++.+. +.+..++|+|+ .+ ++.|++
T Consensus 423 ~e~~a~GaA~la~~~-----~G~~~~~~~a~~~-~~~~~~~~~P~-~~-----~~~y~~ 469 (470)
T PRK10331 423 AETTVAGAAMFGWYG-----VGEFSSPEQARAQ-MKYQYRYFYPQ-TE-----PEFIEE 469 (470)
T ss_pred ccchHHHHHHHHHHh-----cCCCCCHHHHHHH-HhhcceeECCC-cc-----Hhhhhc
Confidence 999999999999999 9999999998765 55567789999 55 688865
No 13
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=1.9e-90 Score=754.26 Aligned_cols=474 Identities=24% Similarity=0.364 Sum_probs=437.1
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCCCC
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~~ 90 (557)
||||+|||++|++|+|.+|+++++.+.+++..+|.++| .||||+ +||++++++++++.+. ..+.+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~---~e~d~~----------~~~~~l~~~i~~~~~~~~~~~~~ 67 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGW---SEQDPE----------DWWDATEEAIKELLEQASEMGQD 67 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCC---eeeCHH----------HHHHHHHHHHHHHHHhcCCCccc
Confidence 69999999999999999999999999999887777764 788888 9999999999998765 45678
Q ss_pred eeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCCCCC
Q 008692 91 VTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSRGY 170 (557)
Q Consensus 91 I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~~~~ 170 (557)
|.+||+++|++++|+||++|+| +.|+++|+|.|+.++++++.+.++ .+.+++.+|+...
T Consensus 68 I~gIgvs~~~~g~v~~d~~g~~--------------------l~~~i~W~D~r~~~~~~~l~~~~~-~~~~~~~~g~~~~ 126 (481)
T TIGR01312 68 IKGIGISGQMHGLVLLDANGEV--------------------LRPAILWNDTRTAQECEELEAELG-DERVLEITGNLAL 126 (481)
T ss_pred EEEEEEecCCceeEEECCCcCC--------------------CccchhhhccchHHHHHHHHHhcC-HhHHHHHHCCCCC
Confidence 9999999999999999999997 378999999999999999988774 5778999999999
Q ss_pred CCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhhhcCCc
Q 008692 171 ERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLGKL 250 (557)
Q Consensus 171 ~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~~LP~i 250 (557)
+.++++||+|+++|+||+|+++++|++++|||.|+|||+.+ +|+|+||+|++||+++++|++++|+.+|++ +++||+|
T Consensus 127 ~~~~~~kl~wl~~~~p~~~~~~~~~~~~~~yi~~~LtG~~~-~d~t~as~tgl~d~~~~~W~~~~l~~~gi~-~~~Lp~i 204 (481)
T TIGR01312 127 PGFTAPKLLWVRKHEPEVFARIAKVMLPKDYLRYRLTGEYV-TEYSDASGTGWFDVAKRAWSKELLDALDLP-ESQLPEL 204 (481)
T ss_pred ccchHHHHHHHHHcChHHHHHhheeeCchHHHhhhhcCCee-eeHHHhhcccccccCCCCCCHHHHHHhCCC-HHHCCCc
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999943 7999999
Q ss_pred ccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcc--eeecCcc
Q 008692 251 APAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEG--HVFPNPV 328 (557)
Q Consensus 251 ~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~--~~~~~~~ 328 (557)
+++++++|+|++++|+++||++|+||++|++|++|+++|+|+.++|++++++|||+++..+++++..++.. ..++|.
T Consensus 205 v~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~- 283 (481)
T TIGR01312 205 IESSEKAGTVRPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHA- 283 (481)
T ss_pred cCCCCeeeeEcHHHHHHhCCCCCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEecCCcccCcccceeeeeee-
Confidence 99999999999999999999999999999999999999999999999999999999998888877665433 345664
Q ss_pred CCCcEEEEEEeechhhHHHHHHHHhcCchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeecccccccccc
Q 008692 329 DTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDG 408 (557)
Q Consensus 329 ~~g~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~G 408 (557)
.++.|+.++++.++|.+++|+++.++..+|+.|+++++++++|+++++|+|||.|+|+|+ +++.++|+|+|
T Consensus 284 ~~~~~~~~~~~~~~g~~~~w~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~---------~~~~~~g~~~g 354 (481)
T TIGR01312 284 LPGGWLPMGVTLSATSSLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPH---------LDPQARGSFIG 354 (481)
T ss_pred cCCceEEEeEehhhHHHHHHHHHHhCCCcHHHHHHHHhcCCCCCCCeEEecccccCCCCC---------CCCCcceEEEC
Confidence 378899999999999999999998864578999999999999999999999999999998 78899999999
Q ss_pred cccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHH
Q 008692 409 VNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLG 486 (557)
Q Consensus 409 l~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alG 486 (557)
++.. |+++|++||++|||||.+|++++.|++ +.++++|+++||++||++|+||+||++|+||++++..|++++|
T Consensus 355 l~~~----~~~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~~~e~~a~G 430 (481)
T TIGR01312 355 LTHN----TTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPEGEEGPALG 430 (481)
T ss_pred CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecCCCcchHHH
Confidence 9976 799999999999999999999999975 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHH
Q 008692 487 AALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIE 547 (557)
Q Consensus 487 AA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~ 547 (557)
||++|+++ .|.|++++++.+. +.+..+.|+|++++ ++.|+++|++|+++|
T Consensus 431 aA~~a~~~-----~g~~~~~~~a~~~-~~~~~~~~~P~~~~-----~~~y~~~~~~~~~~~ 480 (481)
T TIGR01312 431 AAILAAWA-----LGEKDLAALCSEA-VVKQTESVLPIAEN-----VEAYEELYERYKKLY 480 (481)
T ss_pred HHHHHHHh-----cCCCCCHHHHHhh-ccCCCceECCCHHH-----HHHHHHHHHHHHHHh
Confidence 99999999 9999999998765 56778899999998 999999999999987
No 14
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-90 Score=753.01 Aligned_cols=489 Identities=22% Similarity=0.307 Sum_probs=437.5
Q ss_pred CCCcEEEEEEccCCceEEEEEcCC-CCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc
Q 008692 7 PKDSLFLGFDSSTQSLKATVLDSN-LNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (557)
Q Consensus 7 ~~~~~~lgIDiGTts~Ka~l~d~~-G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 85 (557)
|.++|+||||+|||++|+++||.+ |++++..+.+++..+|++|| .||||+ +||++++++++++.+.
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~---~e~d~~----------~~w~~~~~ai~~l~~~ 67 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGW---AEQDPD----------ELWQAILEALRQLLEE 67 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCC---cccCHH----------HHHHHHHHHHHHHHHh
Confidence 456799999999999999999999 89999999999988888875 788888 9999999999998775
Q ss_pred --CCCCCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHH
Q 008692 86 --LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSK 163 (557)
Q Consensus 86 --~~~~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~ 163 (557)
++..+|.|||||+|||++|++|++|+| |+|+|+|+|+|+.++++++.+.+++ ++.+.
T Consensus 68 ~~~~~~~I~aI~is~~~~g~vllD~~g~~--------------------L~~~i~w~D~R~~~~~~~l~~~~~~-~~~~~ 126 (502)
T COG1070 68 SKIDPDAIAAIGISGQGHGLVLLDANGEP--------------------LRPAILWNDTRAAEEVEELEERLGG-EALYA 126 (502)
T ss_pred cccChhhceEEEEeccccceEEECCCCCC--------------------ccccceecchhhHHHHHHHHhhccc-hhhhh
Confidence 577899999999999999999999998 4899999999999999999998864 67788
Q ss_pred HhCCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcC-Cc
Q 008692 164 LTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATA-PS 242 (557)
Q Consensus 164 ~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g-~~ 242 (557)
.||+++++.++++||+|+++|+||+|+|+++|++++|||.|+|||+++ +|+|+||+|+|||+++++|+.++|+.+| +.
T Consensus 127 ~t~~~~~~~~t~~kL~Wl~~~~P~~~~k~~~il~~~dyl~~rLTG~~~-~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~ 205 (502)
T COG1070 127 RTGLQAMPGFTAPKLLWLKENEPDLFAKAAKILLIKDYLRYRLTGEFA-TEISDASGTGLLDIRTRKWDWELLAALGLPE 205 (502)
T ss_pred hcCCCcCccccHHHHHHHHhcCcHHHHhhhheechHHHHHHHHhCCcc-cccccccccccccccccccCHHHHHHcCCCh
Confidence 899999999999999999999999999999999999999999999998 9999999999999999999999999999 52
Q ss_pred hhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcce
Q 008692 243 LEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGH 322 (557)
Q Consensus 243 ~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~ 322 (557)
.++||+++++++++|+|++++|+++||++++||++|+||++++++|+|+.++|++..++||+.++...++++..++...
T Consensus 206 -~~~lp~vv~~g~~~G~l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~~~~~~~~~ 284 (502)
T COG1070 206 -RDLLPPVVEPGEVLGTLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGS 284 (502)
T ss_pred -HHhCCCccCccceeccccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccccccCCccc
Confidence 3899999999999999999999999999999999999999999999999999999999999999998888876665543
Q ss_pred --eecCccCCCcEEEEEEeechhhHHHHHHHHhcCc-hHHHHHHHHh--cCCCCCCCeEeEeccCCCCCCCCCCceeeee
Q 008692 323 --VFPNPVDTKGYMIMLVYKNASLTREDVRNRCAEK-SWDVFNKYLQ--QTPPLNGGKMGFYYKEHEILPPLPVGFHRYI 397 (557)
Q Consensus 323 --~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~~-~~~~l~~~a~--~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~ 397 (557)
.+++. .++.|+.++..+++|.+++|+++.+... ++.++...+. ..++|+.++.|+|||.|||.|.
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~--------- 354 (502)
T COG1070 285 IYTFCLG-LPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPH--------- 354 (502)
T ss_pred eeeeccc-CCCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCC---------
Confidence 34443 3777889999999999999999998653 4544444444 3447888999999999999997
Q ss_pred ecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceE
Q 008692 398 LENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIY 475 (557)
Q Consensus 398 ~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~ 475 (557)
+++..||.|.|++.. |+++|++||++||++|.++..++.|++ +.++++|+++||+|||++|+||+||++|+||.
T Consensus 355 ~~~~~r~~~~g~~~~----~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~ 430 (502)
T COG1070 355 ADPAARGGFVGLTLP----HTRAHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADALGLPVV 430 (502)
T ss_pred CCccceeEEEccccc----cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCcccCHHHHHHHHHHcCCeeE
Confidence 788889999999976 799999999999999999999999985 78889999999999999999999999999999
Q ss_pred EecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 008692 476 TVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRLVEKLG 555 (557)
Q Consensus 476 ~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~l~~~~~ 555 (557)
++...|++++|+|++++.+. .+.+++.+++.+. + ...+.+.|+++. ++.|+++|++|+++|.++.+.++
T Consensus 431 ~~~~~e~~a~g~A~~~~~~~----~~~~~~~~~~~~~-~-~~~~~~~p~~~~-----~~~y~~~~~~~~~~y~~~~~~~~ 499 (502)
T COG1070 431 VPEVEEAGALGGAALAAAAL----GGIYDSAEGALKA-V-VDARRIIPDPER-----AAAYQELYERYRALYQALLALYR 499 (502)
T ss_pred ecCcccchHHHHHHHHHHHh----CCCCccHHHHhhc-c-ccccccCCChHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888882 3445555666553 3 236789999988 99999999999999999998876
Q ss_pred C
Q 008692 556 R 556 (557)
Q Consensus 556 ~ 556 (557)
+
T Consensus 500 ~ 500 (502)
T COG1070 500 Q 500 (502)
T ss_pred h
Confidence 4
No 15
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=7.3e-89 Score=696.12 Aligned_cols=473 Identities=19% Similarity=0.209 Sum_probs=427.0
Q ss_pred CcEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--C
Q 008692 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--L 86 (557)
Q Consensus 9 ~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~ 86 (557)
++|+++||.||||+|+++||.+|++++.++++++..+|+||| +||||. ++|+++..+++.+... +
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GW---VEhDp~----------eIw~~~~~~l~~a~~~~~i 70 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGW---VEHDPL----------EIWASVRSVLKEALAKAGI 70 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCc---cccCHH----------HHHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999999999999987 999999 9999999999886543 7
Q ss_pred CCCCeeEEEEeccccceEEEcCC-CccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHh
Q 008692 87 DLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLT 165 (557)
Q Consensus 87 ~~~~I~aIgis~~~~~~v~vD~~-g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~t 165 (557)
.+.+|+|||||+|++++|+||++ |+| ++|+|.|+|+|+.+.|++|++. +..+.+.+.|
T Consensus 71 ~~~~iaaIGITNQRETtvvWdk~tG~P--------------------i~naIvWQdrRTa~~c~~L~~~-g~~~~i~~kT 129 (499)
T COG0554 71 KPGEIAAIGITNQRETTVVWDKETGKP--------------------IYNAIVWQDRRTADICEELKAD-GYEERIREKT 129 (499)
T ss_pred CccceEEEEeeccceeEEEEeCCCCCC--------------------cccceeeeccchHHHHHHHHhc-chhhhhhhhc
Confidence 78999999999999999999975 998 4899999999999999999987 4457788999
Q ss_pred CCCCCCCChHHHHHHHhhhCChhhhccc----ceeechhhHHHHHhC--CcccccccccccccccccCCCCCcHHHHHHc
Q 008692 166 GSRGYERFTGPQIRKLFQTQPGVYDDTE----RISVVSSFMASLLIG--AYACIDETDAAGMNLMDIRQRVWSKIVLEAT 239 (557)
Q Consensus 166 G~~~~~~~~~~kl~Wl~~~~pe~~~~~~----~~l~~~dyl~~~LTG--~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~ 239 (557)
|..+.|+|++.||.|+.+|.|..-+|+. .|.++..||.|+||| .++ ||+||||+|+|||+++.+||++||+.|
T Consensus 130 GL~~dpYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~LTgg~~h~-TD~sNASRT~L~ni~~l~WD~elL~il 208 (499)
T COG0554 130 GLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWKLTGGKVHV-TDYSNASRTMLFNIHSLEWDDELLELL 208 (499)
T ss_pred CCccCCCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheeeccCCceec-cccchhHHHhcccccccCCCHHHHHHh
Confidence 9999999999999999999998888875 489999999999999 566 999999999999999999999999999
Q ss_pred C-CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccC-CCCC
Q 008692 240 A-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITD-DPEP 317 (557)
Q Consensus 240 g-~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~-~~~~ 317 (557)
| | +++||+++++.++.|.+.. -.+...+||..-.||||||++|.||++||++..++||++++.+.+. +++.
T Consensus 209 ~Ip--~~~LPev~~ss~~~G~t~~-----~~~g~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~ 281 (499)
T COG0554 209 GIP--RSMLPEVRPSSEIYGVTGI-----GFLGAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVR 281 (499)
T ss_pred CCC--hHhCccccccccccccccc-----cccCCceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCcccc
Confidence 9 7 7899999999999998866 2345679999999999999999999999999999999999999997 4555
Q ss_pred CCcc--eeecCccCCC--cEEEEEEeechhhHHHHHHHHhcC-chHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCc
Q 008692 318 RLEG--HVFPNPVDTK--GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVG 392 (557)
Q Consensus 318 ~~~~--~~~~~~~~~g--~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g 392 (557)
++.+ .++.+.+ +| .|.++|.+..+|.+++|++|.+.. .+..+.+.+|.+++ .++|++|.|.|.|-++|+
T Consensus 282 S~~~LLtTIa~~l-~gk~~YALEGsif~aGaavqWLrd~L~~i~~a~~~e~~A~~~~-~~~gVy~VPAFtGLgAPy---- 355 (499)
T COG0554 282 SENGLLTTIAWGL-DGKVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVE-DNGGVYFVPAFTGLGAPY---- 355 (499)
T ss_pred CCCCceeEEEecc-CCeEEEEEecceeehhhHHHHHHHhcCccCchhHHHHHHhccC-CCCceEEEcccccCCCCC----
Confidence 5543 3455544 44 599999999999999999997753 45677777888776 468999999999999999
Q ss_pred eeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHh
Q 008692 393 FHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIY 470 (557)
Q Consensus 393 ~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advl 470 (557)
|++++||+|+||+.. ++++|++||++|+|||..|++++.|++ +.+++++++.||.++|+++||++||++
T Consensus 356 -----Wd~~aRGai~Gltrg----t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil 426 (499)
T COG0554 356 -----WDSDARGAIFGLTRG----TTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL 426 (499)
T ss_pred -----cCcccceeEEeeCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh
Confidence 999999999999987 899999999999999999999999985 668999999999999999999999999
Q ss_pred CCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHHH
Q 008692 471 GCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRL 550 (557)
Q Consensus 471 g~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~l 550 (557)
|+||+++...|++|+|||++|+.+ .|.|+|.+|..+. ...++.|+|.... +.-+++|..|++..++.
T Consensus 427 g~~V~Rp~~~EtTAlGaA~lAGla-----~G~w~~~~el~~~--~~~~~~f~p~m~~------~~r~~~y~~W~~AV~rs 493 (499)
T COG0554 427 GVPVERPVVLETTALGAAYLAGLA-----VGFWKDLDELAEL--WPLDKEFEPGMDE------EEREELYAGWKKAVKRS 493 (499)
T ss_pred CCeeeccccchhhHHHHHHHHhhh-----hCcCCCHHHHHhh--hcccceeCCCCCH------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999998753 4678899999864 67788999999998875
Q ss_pred H
Q 008692 551 V 551 (557)
Q Consensus 551 ~ 551 (557)
.
T Consensus 494 ~ 494 (499)
T COG0554 494 L 494 (499)
T ss_pred h
Confidence 4
No 16
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=4.9e-88 Score=730.42 Aligned_cols=449 Identities=16% Similarity=0.147 Sum_probs=395.1
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeecc--CCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFD--SELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDL 88 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~--~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~ 88 (557)
++||||+||||+|++|||.+|+++++++.+++ ...|.+|| +||||+ +||++++++++++.+...+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~---~eqd~~----------~~w~~~~~~~~~l~~~~~~ 68 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDY---HIWDLE----------AIWQKLADCCQQINSELTE 68 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCc---eeeCHH----------HHHHHHHHHHHHHHhhcCh
Confidence 78999999999999999999999999998876 34455554 777777 9999999999998754445
Q ss_pred CCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCCC
Q 008692 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (557)
Q Consensus 89 ~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~~ 168 (557)
.+|.+||||+|++++|++|++|+| |+|+|+|+|+|+.++++++.+.++ .++++++||++
T Consensus 69 ~~I~aI~~s~~~~~~v~~D~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~ 127 (465)
T TIGR02628 69 KHIRGIAVTTFGVDGAPFDKQGNQ--------------------LYPIISWKCPRTAPVMDNIERLLD-AQRLYAINGIG 127 (465)
T ss_pred hceEEEEEeccccceEEECCCCCC--------------------ccccccccCcccHHHHHHHHHhhC-HHHHHHHhCCC
Confidence 679999999999999999999998 489999999999999999998764 57899999999
Q ss_pred CCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhhhcC
Q 008692 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (557)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~~LP 248 (557)
+.+.++++||+|+++|+||+|+|+++|++++|||.|+|||+.+ +|+|+||+|+|||+++++|++++|+.+|.+ +++||
T Consensus 128 ~~~~~~~~kl~wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~w~~ell~~~gi~-~~~lP 205 (465)
T TIGR02628 128 AYSFNTLYKLVWLKEHHPQLFERMHKFVFISSMITHRLTGEFT-TDITMAGTSMMTDLTQRNWSPQILQALGLS-RRLFP 205 (465)
T ss_pred ccccchHHHHHHHHHhChHHHHHHHHhhCcHHHHHHHHhCCcc-cchhhhhcceeeecCcCCCCHHHHHHcCCC-HHHCC
Confidence 9999999999999999999999999999999999999999997 999999999999999999999999999943 78999
Q ss_pred CcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCccee--ecC
Q 008692 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHV--FPN 326 (557)
Q Consensus 249 ~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~--~~~ 326 (557)
+++++++++|+|++++|++|||++||||++|++|++|+++|+|+ .+|++++++|||+++...+++|..+..... +++
T Consensus 206 ~l~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~-~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~ 284 (465)
T TIGR02628 206 PLVEAGEQIGTLQNSAAAMLGLPVGVPVISAGHDTQFALFGSGA-EQNQPVLSSGTWEILMARSQQVDTSLLSQYAGSTC 284 (465)
T ss_pred CcccCCccceeeCHHHHHHhCCCCCCCEEecCccHHHHHhccCC-CCCcEEEeccchhhheeccCcCCCCcccccccccc
Confidence 99999999999999999999999999999999999999999998 889999999999998888887766553321 221
Q ss_pred c--cCCCcEEEEEEeechhhHHHHHHHHhcC------chHHHHHHHHhcCCCCCCCeE-eEeccCCCCCCCCCCceeeee
Q 008692 327 P--VDTKGYMIMLVYKNASLTREDVRNRCAE------KSWDVFNKYLQQTPPLNGGKM-GFYYKEHEILPPLPVGFHRYI 397 (557)
Q Consensus 327 ~--~~~g~~~~~~~~~~~G~~~~W~~~~~~~------~~~~~l~~~a~~~~~g~~gl~-~lP~l~Ger~P~~~~g~~~~~ 397 (557)
. ..+|.|.......++| +++||++.+.. ..|++|++.+++++||++|++ |+||+. |
T Consensus 285 ~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~----~---------- 349 (465)
T TIGR02628 285 ELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL----S---------- 349 (465)
T ss_pred ccccCCceeeehhhhhhhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC----c----------
Confidence 1 1256676555445555 89999997742 126999999999999999998 888763 3
Q ss_pred ecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceE
Q 008692 398 LENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIY 475 (557)
Q Consensus 398 ~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~ 475 (557)
.+||+|+||+.+ |+++||+||++|||||.+|++++.|++ +.++++|+++||++||++|+||+|||+|+||+
T Consensus 350 ---~a~g~~~Gl~~~----~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~ 422 (465)
T TIGR02628 350 ---CGQGGIQGLTLN----TTRGHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVK 422 (465)
T ss_pred ---ccceeEECCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeE
Confidence 346788888876 799999999999999999999999975 35789999999999999999999999999999
Q ss_pred EecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecc
Q 008692 476 TVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLA 524 (557)
Q Consensus 476 ~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~ 524 (557)
+++..|++++|||++|+++ .|.|+|++++.+. +.+..++|+|+
T Consensus 423 ~~~~~e~~~lGaA~~a~~a-----~G~~~~~~~a~~~-~~~~~~~~~P~ 465 (465)
T TIGR02628 423 VVDDAETTVAGAAMFGFYG-----VGEYNSPEEAQAQ-MHPQYRYFYPQ 465 (465)
T ss_pred eccCCcchHHHHHHHHHHh-----cCccCCHHHHHHH-hhccceeeCCC
Confidence 9999999999999999999 9999999998765 55667789985
No 17
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1.6e-77 Score=621.12 Aligned_cols=494 Identities=16% Similarity=0.197 Sum_probs=425.2
Q ss_pred CcEEEEEEccCCceEEEEEcCC-CCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--
Q 008692 9 DSLFLGFDSSTQSLKATVLDSN-LNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (557)
Q Consensus 9 ~~~~lgIDiGTts~Ka~l~d~~-G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~-- 85 (557)
++|+||||+||.|.|+.+||.. |++|+.+.++|+...+.++ ..||+|. +||+++|.+++.+.+.
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~---~~~q~s~----------d~~~av~~aVr~~v~~ag 68 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSN---LAEQHSR----------DYWEAVCAAVRDVVAKAG 68 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCcc---ccccCHH----------HHHHHHHHHHHHHHHHcC
Confidence 4699999999999999999987 9999999999998776654 3567776 9999999999987664
Q ss_pred CCCCCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCC-CCCccccCCCcHHHHHHHHHHhCChHHHHHH
Q 008692 86 LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFST-KESPVWMDSSTTAQCREIEKAVGGALELSKL 164 (557)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l-~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~ 164 (557)
+++.+|++|||+++ +|+|++|++|+||- +. |.|.- .++|+|+|.|+.+|+++++... .+++..
T Consensus 69 v~~~~V~gIGvDaT-cSlvv~d~~g~pl~--v~----------~~~~~~~~vilWmDHrA~~EAe~in~~~---~~~L~~ 132 (544)
T COG1069 69 VDPADVVGIGVDAT-CSLVVIDRDGNPLA--VL----------PEFPNNPNVILWMDHRAVEEAEEINATC---HPVLDY 132 (544)
T ss_pred CChhHeeEEEEcce-eeeEEECCCCCeec--cC----------CCCCCCCceEEeccchHHHHHHHHHhhc---hHHHHh
Confidence 88899999999999 99999999999971 11 11211 2599999999999999999863 558999
Q ss_pred hCCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCccccccccccccccccc-CCCCCcHHHHHHcC-Cc
Q 008692 165 TGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDI-RQRVWSKIVLEATA-PS 242 (557)
Q Consensus 165 tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~-~~~~W~~~ll~~~g-~~ 242 (557)
.|..+++.+..|||+|+++|.|++|+|+.+|+.+.|||.|+|||.... ...++..-..|.. +++.|++++++.+| .+
T Consensus 133 ~GG~~SpEm~~PKlmwl~~~~p~~~~~a~~~fdl~D~l~~~ltG~~~R-s~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~ 211 (544)
T COG1069 133 YGGKISPEMMIPKLMWLKREAPAVWERAAHIFDLADWLTWKLTGSIAR-SRCTAGCKWNWLEHEGGLWSADFFDKIGLDD 211 (544)
T ss_pred hCCccChhhhHHHHHHHHhhChHHHHHhhhhhhHHHHHHHHhhcchhh-ccccceeeeeeeccccCCCCHHHHHhcCchh
Confidence 999999999999999999999999999999999999999999997641 1222222245666 45569999999999 44
Q ss_pred hh---hhcC-CcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCC
Q 008692 243 LE---EKLG-KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPR 318 (557)
Q Consensus 243 ~~---~~LP-~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~ 318 (557)
+. ..|| ++++.|+.+|.+++++|+++||++||.|.+|..|..++++|++...++.+..+.|||+|.+..++++.+-
T Consensus 212 l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~~~~~v 291 (544)
T COG1069 212 LRELDSKLPEDIVPAGEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSEKPRFV 291 (544)
T ss_pred hhcccccCCcccccCCccccccCHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecCCceec
Confidence 33 3477 7899999999999999999999999999999999999999999889999999999999999999887654
Q ss_pred Cccee-ecCccCCCcEEEEEEeechhhHHHHHHHHhc-------------C-------chHHHHHHHHhcCCCCCCCeEe
Q 008692 319 LEGHV-FPNPVDTKGYMIMLVYKNASLTREDVRNRCA-------------E-------KSWDVFNKYLQQTPPLNGGKMG 377 (557)
Q Consensus 319 ~~~~~-~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~-------------~-------~~~~~l~~~a~~~~~g~~gl~~ 377 (557)
+..+. +...+.||.|+.+++++..|..++||.+... . ...+.|.+.+.+++|+++++++
T Consensus 292 ~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~ 371 (544)
T COG1069 292 PGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHV 371 (544)
T ss_pred CccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEe
Confidence 44321 2223569999999999999999999998741 1 1244566777788999999999
Q ss_pred EeccCCCCCCCCCCceeeeeecccccccccccccccccCCChh---hHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEe
Q 008692 378 FYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPP---SEVRALVEGQFLSMRGHAERFGL-PSPPRRIIAT 453 (557)
Q Consensus 378 lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~---~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~ 453 (557)
||+|+|.|+|+ .||+++|+|.|+++. |+++ .++||.+|+++|..|.++|.+++ |.++++|+++
T Consensus 372 l~~f~GNRsP~---------aDp~l~G~i~GltL~----T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~s 438 (544)
T COG1069 372 LDWFNGNRSPL---------ADPRLKGVITGLTLD----TSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFAS 438 (544)
T ss_pred cccccCCcCCC---------CCccceeEEeccccC----CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEec
Confidence 99999999998 799999999999987 6788 89999999999999999999987 9999999999
Q ss_pred cCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeeccc-ccCchhh
Q 008692 454 GGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAV-TAGDQQL 532 (557)
Q Consensus 454 GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~-~~~~~~~ 532 (557)
||..||++|||+.||++|+||+++..+++.++|+||++++| .|.|+|+..|.++ |........|++ +.
T Consensus 439 GG~~KN~llmql~aDvtg~~v~i~~s~~a~llGsAm~~avA-----ag~~~dl~~A~~a-Ms~~~~~~~~~~~~~----- 507 (544)
T COG1069 439 GGIRKNPLLMQLYADVTGRPVVIPASDQAVLLGAAMFAAVA-----AGVHPDLPAAAQA-MSSAVEKTLPPPPER----- 507 (544)
T ss_pred CCcccCHHHHHHHHHhcCCeEEeecccchhhhHHHHHHHHH-----hccCcchHHHHHH-hhcccceecCChHHH-----
Confidence 99999999999999999999999999999999999999999 9999999999887 555555555555 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 008692 533 VSKYAVMMKKRLEIENRLVEKLGR 556 (557)
Q Consensus 533 ~~~Y~~~y~~y~~l~~~l~~~~~~ 556 (557)
+..|+++|++|++++....+..++
T Consensus 508 ~~~y~~lyr~y~~l~~~~~~~~~~ 531 (544)
T COG1069 508 AARYERLYRRYLQLHDDAEKHYAR 531 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999988776554
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=2.6e-77 Score=645.18 Aligned_cols=425 Identities=13% Similarity=0.082 Sum_probs=360.9
Q ss_pred EEEEccCCceEEEEEcCC---CCEE-EEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCC
Q 008692 13 LGFDSSTQSLKATVLDSN---LNIV-ASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDL 88 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~---G~~v-~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~ 88 (557)
||||+|||++|++|+|.+ |+++ +..+++++...++++| .||||+ .||+++.++++++... .
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~----------~~~~~~~~~l~~~~~~--~ 65 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGH---ECWDID----------ALEQEIRLGLNKVDAE--G 65 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCE---EEEehH----------HHHHHHHHHHHHHhcc--C
Confidence 589999999999999998 5666 6666666655555543 566666 9999999999988653 3
Q ss_pred CCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCCC
Q 008692 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (557)
Q Consensus 89 ~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~~ 168 (557)
.+|.+||||+||+++|+||++|+| |+|+|+|+|+|+.++++++.+.++ .++++++||++
T Consensus 66 ~~i~~Igis~q~~~~v~~D~~G~~--------------------l~p~i~w~D~R~~~~~~~l~~~~~-~~~~~~~tG~~ 124 (454)
T TIGR02627 66 IAPDSIGIDTWGVDFVLLDQNGQR--------------------VGDPVSYRDSRTDGVMAQVQSELG-KEAIYQRTGIQ 124 (454)
T ss_pred CCceEEEEeccceeEEEEcCCCCC--------------------ccCceecCCCCCHHHHHHHHhhcC-HHHHHHHhCCC
Confidence 569999999999999999999998 489999999999999999998764 57899999999
Q ss_pred CCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhhhcC
Q 008692 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (557)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~~LP 248 (557)
+.+.++++||+|+++|+|++|+|+++|++++|||.|+|||+.+ +|+|+||+|+|||+++++|++++++.+|.+ +++||
T Consensus 125 ~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~As~t~l~d~~~~~W~~~ll~~~gi~-~~~lP 202 (454)
T TIGR02627 125 FLPFNTLYQLRALTEQQPDLLEKVAHFLLIPDYLNYRLTGKKV-WEYTNATTTQLVNINTDDWDEDLLAYLGVP-AAWFG 202 (454)
T ss_pred cCCccHHHHHHHHHHhChhHHHHHHHhCCHHHHHHHheeCCce-eeeehhhhcccccCCCCCcCHHHHHHcCCC-HHHcC
Confidence 9999999999999999999999999999999999999999997 999999999999999999999999999943 78999
Q ss_pred CcccCCccccccCHHHHHHcCCCCCCeEEE-cCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcce--eec
Q 008692 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGH--VFP 325 (557)
Q Consensus 249 ~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~-G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~--~~~ 325 (557)
+|+++++++|.+.+ +|+ +|+||++ |+||++|+++|+|+.++|++++++|||+++...+++|..++... .+.
T Consensus 203 ~l~~~~~~~G~~~~-----~gl-~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~ 276 (454)
T TIGR02627 203 RPTHPGNVIGLWEC-----PQG-NQIPVVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQTPITNEQALAANIT 276 (454)
T ss_pred CccCCCCeeEEeec-----ccC-CCCCEEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCCCCCCCHHHHHhccc
Confidence 99999999999864 477 7999998 99999999999999999999999999998887777776654331 121
Q ss_pred C-ccCCCcEEEEEEeechhhHHHHHHHHhc----CchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeecc
Q 008692 326 N-PVDTKGYMIMLVYKNASLTREDVRNRCA----EKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILEN 400 (557)
Q Consensus 326 ~-~~~~g~~~~~~~~~~~G~~~~W~~~~~~----~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~ 400 (557)
+ ...++.|....... ++ |+++.+. ...|+.+.+.+..+|+++ |++.|++.|+ +++
T Consensus 277 ~~~~~~~~~~~~~~~~-g~----W~~~~~~~~~~~~~~~~l~~~a~~~p~~~------g~~~~~~~~~---------~~~ 336 (454)
T TIGR02627 277 NEGGADGRYRVLKNIM-GL----WLLQRVCRERDINDLPALIEQAQALPAFK------SIINPNDDRF---------INP 336 (454)
T ss_pred cccccccEEEeecchh-hh----HHHHHHHhhhccccHHHHHHHhcCCCCCC------eeeCCCcccc---------cCh
Confidence 1 12356676655443 33 6665442 246888888887776643 6667888886 566
Q ss_pred c-ccc------cccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhC
Q 008692 401 F-EGE------TLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG 471 (557)
Q Consensus 401 ~-~~g------~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg 471 (557)
. +++ .|+|++.. |+++||+||++|||||.+|++++.|++ +.++++|+++||+++|++|+||+||++|
T Consensus 337 ~~~~~~~~~~~~~~Gl~~~----~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvlg 412 (454)
T TIGR02627 337 ENMCEEIQAYCRETNQPIP----ESDAELARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADACG 412 (454)
T ss_pred hhhHHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHhC
Confidence 3 333 55999987 799999999999999999999999974 6678999999999999999999999999
Q ss_pred CceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHh
Q 008692 472 CDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYK 511 (557)
Q Consensus 472 ~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~ 511 (557)
+||.+.. .|++++|||++|+++ .|.|++++++.+
T Consensus 413 ~pV~~~~-~e~~a~GaA~~a~~~-----~G~~~~~~~~~~ 446 (454)
T TIGR02627 413 IRVIAGP-VEASTLGNIGVQLMA-----LDEINDMAAFRQ 446 (454)
T ss_pred CceEcCC-chHHHHHHHHHHHHh-----cCCcCCHHHHHH
Confidence 9998765 779999999999999 999999988865
No 19
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=2.7e-75 Score=630.47 Aligned_cols=420 Identities=13% Similarity=0.071 Sum_probs=359.9
Q ss_pred ccCChhHHHHHHHHHHHHHhhcCCCCCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCC
Q 008692 64 IVSPTLMWIEALDLMLQKLSKSLDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSS 143 (557)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~l~~~~~~~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~R 143 (557)
.+|||+.||+++.++++++.. ...+|.+||||+|++++|+||++|+| |+|+|+|+|+|
T Consensus 31 ~~~d~~~~~~~i~~~l~~~~~--~~~~I~~Igis~q~~~~v~lD~~G~p--------------------L~pai~w~D~R 88 (471)
T PRK10640 31 DTWDVDSLESAIRLGLNKVCE--EGIRIDSIGIDTWGVDYVLLDKQGQR--------------------VGLPVSYRDSR 88 (471)
T ss_pred eEECHHHHHHHHHHHHHHHhh--cCCCccEEEEcCCcccEEEECCCCCC--------------------cCCceeccCCC
Confidence 566666999999999988754 34679999999999999999999998 48999999999
Q ss_pred cHHHHHHHHHHhCChHHHHHHhCCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccc
Q 008692 144 TTAQCREIEKAVGGALELSKLTGSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNL 223 (557)
Q Consensus 144 a~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l 223 (557)
+.++++++.+.++ .+++|++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+|||+.+ +|+|+||+|+|
T Consensus 89 a~~~~~~l~~~~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~-~d~s~as~t~l 166 (471)
T PRK10640 89 TDGVMAQAQQQLG-KRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYRLTGKMN-WEYTNATTTQL 166 (471)
T ss_pred CHHHHHHHHHhcC-HHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHHHhCCcc-eeecHhhhccc
Confidence 9999999998874 578999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred cccCCCCCcHHHHHHcCCchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEE-cCChhhhhhhccCCCCCCcEEEEe
Q 008692 224 MDIRQRVWSKIVLEATAPSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQ-WSGDNPNSLAGLTLSTSGDLAISL 302 (557)
Q Consensus 224 ~d~~~~~W~~~ll~~~g~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~-G~~D~~aa~~g~g~~~~g~~~~~~ 302 (557)
||+++++||+++++.+|.+ +++||+++++++++|++++++ | .||||++ |+||++|+++|+|+.++|++++++
T Consensus 167 ~d~~~~~W~~ell~~~Gi~-~~~LP~lv~~~~~~G~v~~~~----g--~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~ 239 (471)
T PRK10640 167 VNINSDDWDESLLAWSGAP-KAWFGRPTHPGNVIGHWICPQ----G--NEIPVVAVASHDTASAVIASPLNDSDAAYLSS 239 (471)
T ss_pred cCCCcCCcCHHHHHHcCCC-HHHcCCCcCCCccceeeeccc----C--CCCCEEEeCCCcHHHHhhccCCCCCCeEEEEe
Confidence 9999999999999999943 799999999999999987664 5 6899998 699999999999999999999999
Q ss_pred cccceeccccCCCCCCCcce--eecC-ccCCCcEEEEEEeechhhHHHHHHHHhc----CchHHHHHHHHhcCCCCCCCe
Q 008692 303 GTSDTVFGITDDPEPRLEGH--VFPN-PVDTKGYMIMLVYKNASLTREDVRNRCA----EKSWDVFNKYLQQTPPLNGGK 375 (557)
Q Consensus 303 GTs~~~~~~~~~~~~~~~~~--~~~~-~~~~g~~~~~~~~~~~G~~~~W~~~~~~----~~~~~~l~~~a~~~~~g~~gl 375 (557)
|||+++..++++|..+.... .+.+ ...+|.|.+...+. | +|+++.+. ...|+++.++++++| |++|+
T Consensus 240 GT~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~-g~~gl 313 (471)
T PRK10640 240 GTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIM--G---LWLLQRVLQERQITDLPALIAATAALP-ACRFL 313 (471)
T ss_pred ccHhhhheecCCCcCCHHHHHhccCccCCCCceEEEecchh--H---HHHHHHHHHHhccCCHHHHHHHHHhCC-CCCce
Confidence 99999888888877654321 1211 12367776665332 3 89999764 246888888888876 88888
Q ss_pred EeEeccCCCCCCCCCCceeeeeecc-ccccccccccccc--ccCCChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEE
Q 008692 376 MGFYYKEHEILPPLPVGFHRYILEN-FEGETLDGVNEVE--VKEFDPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRI 450 (557)
Q Consensus 376 ~~lP~l~Ger~P~~~~g~~~~~~~~-~~~g~~~Gl~~~~--~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i 450 (557)
+ +| .|+|.+ ++ .+||+|+|++... -..|+++||+|||+||+||.+|++++.|++ +.++++|
T Consensus 314 i-~p--~ger~~-----------~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i 379 (471)
T PRK10640 314 I-NP--NDDRFI-----------NPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHELAQLRGEPFSQL 379 (471)
T ss_pred e-CC--Cccccc-----------CchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 7 57 688843 43 6888887777640 000399999999999999999999999984 6678999
Q ss_pred EEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhccc---ccceeeccccc
Q 008692 451 IATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEK---TSLSCKLAVTA 527 (557)
Q Consensus 451 ~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~---~~~~~~P~~~~ 527 (557)
+++||++||++|+||+|||+|+||.+.+. |++++|||++|+++ .|.|++++++.+ +.. ..++|+|++
T Consensus 380 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-ea~alGaa~~a~~a-----~G~~~~~~~~~~--~~~~~~~~~~~~P~~-- 449 (471)
T PRK10640 380 HIVGGGCQNALLNQLCADACGIRVIAGPV-EASTLGNIGIQLMT-----LDELNNVDDFRQ--VVSTNFPLTTFTPNP-- 449 (471)
T ss_pred EEECChhhhHHHHHHHHHHhCCCeeeCCh-hHHHHHHHHHHHHH-----cCCcCCHHHHHH--HHHhcCCceEEcCCC--
Confidence 99999999999999999999999988664 89999999999999 999999998754 334 468999998
Q ss_pred CchhhHHHHHHHHHHHHHHHHH
Q 008692 528 GDQQLVSKYAVMMKKRLEIENR 549 (557)
Q Consensus 528 ~~~~~~~~Y~~~y~~y~~l~~~ 549 (557)
...|++.|..|+++++.
T Consensus 450 -----~~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 450 -----DSEIARHVAQFQSLRQT 466 (471)
T ss_pred -----hHHHHHHHHHHHHHhcc
Confidence 56899999999999875
No 20
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.1e-69 Score=561.34 Aligned_cols=477 Identities=19% Similarity=0.220 Sum_probs=407.6
Q ss_pred CcEEEEEEccCCceEEEEEc-CCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--
Q 008692 9 DSLFLGFDSSTQSLKATVLD-SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS-- 85 (557)
Q Consensus 9 ~~~~lgIDiGTts~Ka~l~d-~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~-- 85 (557)
+++++|||+||||+|++||| .+|+++..+..++....|+++| +||||. ++|++++++++.+.+.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~---~eq~p~----------eI~~~V~~ci~~~~e~l~ 71 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGW---VEQDPK----------EIWQAVCRCIEKACEKLG 71 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCe---EEeCHH----------HHHHHHHHHHHHHHHhhc
Confidence 47899999999999999999 7799999999999988888876 999999 9999999999976543
Q ss_pred ---CCCCCeeEEEEeccccceEEEcCC-CccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHH-
Q 008692 86 ---LDLSKVTAVSGSGQQHGSVYWKKG-SATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALE- 160 (557)
Q Consensus 86 ---~~~~~I~aIgis~~~~~~v~vD~~-g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~- 160 (557)
.....|.+|++++|+++.|+|++. |+| +.++|.|+|.|+..+++++.........
T Consensus 72 ~~~~~~~~~~~igv~~qr~~~v~w~~~tg~p--------------------~~niI~W~D~Ra~~~~~~ln~~~~~~~~~ 131 (516)
T KOG2517|consen 72 VLNIKVVGATCIGVVNQREGSVLWNKRTGEP--------------------LTNIIVWMDHRAVSEVEELNSSTPSNLFL 131 (516)
T ss_pred cccccccccEEEEEEecCCceEEeecCCCCc--------------------ccceEEeeccccHHHHHHHHhcCCchhcc
Confidence 233458889999999999999975 987 3789999999999999999987653211
Q ss_pred HHHHhCCCCCCCChHHHHHHHhhhCChh-hhcccceeechhhHHHHHhC---C---cccccccccccccccccCCCCCcH
Q 008692 161 LSKLTGSRGYERFTGPQIRKLFQTQPGV-YDDTERISVVSSFMASLLIG---A---YACIDETDAAGMNLMDIRQRVWSK 233 (557)
Q Consensus 161 ~~~~tG~~~~~~~~~~kl~Wl~~~~pe~-~~~~~~~l~~~dyl~~~LTG---~---~~~~d~s~As~t~l~d~~~~~W~~ 233 (557)
....+|.+++++|.++||+||++|.|++ ..+.++.+...+|+.|++++ . +. +|.++||++++||..++.|+.
T Consensus 132 ~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~~~-~d~~Nas~t~~f~~~~~~wd~ 210 (516)
T KOG2517|consen 132 PRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAKEEGGFDLGTFDTWLATGLTGRSSCHC-TDVTNASRTGLFNTESGLWDL 210 (516)
T ss_pred cccccCCccccccchheehHHhhhCHHHHHHHHhcccchhhhhhheeecCCccceecc-ccccccccccccchhhhhhhh
Confidence 1268999999999999999999999999 77777777777776666654 4 34 899999999999999999999
Q ss_pred HHHHHcC-CchhhhcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceecccc
Q 008692 234 IVLEATA-PSLEEKLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGIT 312 (557)
Q Consensus 234 ~ll~~~g-~~~~~~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~ 312 (557)
.+++.+| | .++||++..+++++|++. +..+|+.+|+||.+..+|++|+++|..+.++|+.+.++||++++..++
T Consensus 211 ~~~~f~~lp--~~llp~i~s~~e~~g~~~---~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~ 285 (516)
T KOG2517|consen 211 KLLDFFGLP--LNLLPDIRSSSEVYGTTA---AGDLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVW 285 (516)
T ss_pred hhhhhhCCC--cccCCccccccccccccc---ccccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeecc
Confidence 9999999 7 789999999999999885 345679999999999999999999999999999999999999998888
Q ss_pred CC-CCCCCcce--eecCccCCC---cEEEEEEeechhhHHHHHHHHhcC-chHHHHHHHHhcCCCCCCCeEeEeccCCCC
Q 008692 313 DD-PEPRLEGH--VFPNPVDTK---GYMIMLVYKNASLTREDVRNRCAE-KSWDVFNKYLQQTPPLNGGKMGFYYKEHEI 385 (557)
Q Consensus 313 ~~-~~~~~~~~--~~~~~~~~g---~~~~~~~~~~~G~~~~W~~~~~~~-~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger 385 (557)
.. +.....+. +..+....| .|.+++....++...+|+++.+.. .....+++++.++. .+.+++|.|-|.|.|
T Consensus 286 G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~-~t~d~~f~P~f~G~~ 364 (516)
T KOG2517|consen 286 GPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEELNEIEKLAAEVN-LTSDVHFVPDFHGLR 364 (516)
T ss_pred CCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHhhc-ccCceEEEccccCCC
Confidence 63 32222221 122222122 277888888899999999998743 33455666666665 678999999999999
Q ss_pred CCCCCCceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC-C-CCCCEEEEecCCcchhhHH
Q 008692 386 LPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-P-SPPRRIIATGGASANQTIL 463 (557)
Q Consensus 386 ~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~-~-~~~~~i~~~GGga~s~~w~ 463 (557)
+|+ |+|.+||+|.|++.. ++..||+||++|+|||++|++++.|+. + .++++++++||.++|++++
T Consensus 365 sP~---------~d~~arg~i~Gls~~----ts~~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~ 431 (516)
T KOG2517|consen 365 SPY---------ADPTARGVIIGLSQD----TSKEHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLM 431 (516)
T ss_pred CCC---------CCcccceeEEEecCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHH
Confidence 999 999999999999987 799999999999999999999999986 5 6999999999999999999
Q ss_pred HHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCC--CCCHHHHHhhhcccccceeecccccCchhhHHHHHHHHH
Q 008692 464 SCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGS--FVPISNMYKDKLEKTSLSCKLAVTAGDQQLVSKYAVMMK 541 (557)
Q Consensus 464 Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~--~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~ 541 (557)
|++||++|+||++++..|.+++|||++|+.| .|. |.+.+++. +....++|.|+.+. ..+++.|+
T Consensus 432 Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a-----~~~~~~~~~~~~~---~~~~~~~~~P~~~~------~~~~~ky~ 497 (516)
T KOG2517|consen 432 QLQADILGLPVVRPQDVEAVALGAAMLAGAA-----SGKWSYSSEEKAS---LTGVGKVFRPNIDD------KLLDKKYQ 497 (516)
T ss_pred HHHHHHhCCccccccchhHHHHHHHHHHHhh-----cCCcchhhHHHHh---cCCCcceecCCCCc------HHHHHHHH
Confidence 9999999999999999999999999999999 888 55566553 45778899999865 88999999
Q ss_pred HHHHHHHHHHH
Q 008692 542 KRLEIENRLVE 552 (557)
Q Consensus 542 ~y~~l~~~l~~ 552 (557)
+|++++++.+.
T Consensus 498 ~w~~ave~~~~ 508 (516)
T KOG2517|consen 498 IWLKAVERQLG 508 (516)
T ss_pred HHHHHHHHHhh
Confidence 99999998664
No 21
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-67 Score=527.09 Aligned_cols=533 Identities=55% Similarity=0.902 Sum_probs=473.2
Q ss_pred CCCcEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc-
Q 008692 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (557)
Q Consensus 7 ~~~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~- 85 (557)
+..+.+||+|++|+.+|++++|.+++++.++...|....|+.+..+++..|.. ...+.+++.+|.+|+.-+++.+.++
T Consensus 6 ~~~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~-~~~i~~PV~MWveAlDlll~kl~~~~ 84 (545)
T KOG2531|consen 6 QPDRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGG-GETITSPVLMWVEALDLLLDKLREAG 84 (545)
T ss_pred CCCceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCC-CcEEeccHHHHHHHHHHHHHHHHHcC
Confidence 44557999999999999999999999999999999999999988888998885 4678888889999999999999887
Q ss_pred CCCCCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHh
Q 008692 86 LDLSKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLT 165 (557)
Q Consensus 86 ~~~~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~t 165 (557)
++-..|.||+-++|.|+.|+|.+.++-.+++||++..|.|||..+|++....+|+|..++++|+++...+||+.++.++|
T Consensus 85 ~d~~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LT 164 (545)
T KOG2531|consen 85 FDLSKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLT 164 (545)
T ss_pred CCHHHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhh
Confidence 77789999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhh
Q 008692 166 GSRGYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEE 245 (557)
Q Consensus 166 G~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~ 245 (557)
|++.+..|+.++|+.+.+.+||+|++|.+|-.++.|+...|-|..+.+|+|++|++.|+|++++.|+.++|+++.+++++
T Consensus 165 GSRAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgsGMNL~dIr~k~ws~~~L~~~apdL~~ 244 (545)
T KOG2531|consen 165 GSRAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGSGMNLLDIRKKKWSKALLDACAPDLEE 244 (545)
T ss_pred cchhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceecccccCchHHHHhhhhhhHHHHhhhChhHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999988889
Q ss_pred hcCCcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCcEEEEecccceeccccCCCCCCCcceeec
Q 008692 246 KLGKLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGDLAISLGTSDTVFGITDDPEPRLEGHVFP 325 (557)
Q Consensus 246 ~LP~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~ 325 (557)
+|..++++..++|+|++.+-+++|+++++.|++-.||++++..|.-. +++++.+|+|||..+.+.++++.+.+.++.||
T Consensus 245 KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l-~~~dl~iSLGTSdTv~m~t~~~~p~~egHvf~ 323 (545)
T KOG2531|consen 245 KLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPL-RPGDLLISLGTSDTVFMVTKEYHPSPEGHVFC 323 (545)
T ss_pred HhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccc-cCCceEEEecCcceEEEEcCCCCCCCCcceec
Confidence 99999999999999999999999999999999999999999999988 67999999999999999999999999999999
Q ss_pred CccCCCcEEEEEEeechhhHHHHHHHHhcCchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeeccccccc
Q 008692 326 NPVDTKGYMIMLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGET 405 (557)
Q Consensus 326 ~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~ 405 (557)
|++.++.|+.+-|..||+.+.+-+|+.....+|+.+++...+.|+|.+|.+-+-|-.+|-.|..+.|..++..+......
T Consensus 324 hP~~~~~YM~mlCfkNgSL~RE~ir~~~~~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~ 403 (545)
T KOG2531|consen 324 HPTDPNHYMGMLCFKNGSLTRERIRNESANGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSA 403 (545)
T ss_pred cCCCccceEEEEEecCChHHHHHHhhcccCCCHHHHHHHhccCcCCCCCceeEecccccccCCCCccceEEEecCCccch
Confidence 99989999999999999999999999776689999999999999999998766666789899777886654444321111
Q ss_pred cc-ccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCch
Q 008692 406 LD-GVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSA 483 (557)
Q Consensus 406 ~~-Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~ 483 (557)
-. |+-.. .++++-+||++||.+...|...+.|.. ..+..+|+++||.|+|+...|++|||||.||.+.+..+++
T Consensus 404 ~~~~v~kf----~~p~~e~rAlvEgQ~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa 479 (545)
T KOG2531|consen 404 ERIEVAKF----SDPEIEARALVEGQFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSA 479 (545)
T ss_pred hhcccccC----CCchHHHHHHHHHhHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchh
Confidence 11 22222 258999999999999999999999875 3478999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccccccCCCCCCHHHHH---hhhcccccceeecccccCchhhHHHHHHHHHHHHHHHHHH
Q 008692 484 SLGAALRAAHGYLCSKKGSFVPISNMY---KDKLEKTSLSCKLAVTAGDQQLVSKYAVMMKKRLEIENRL 550 (557)
Q Consensus 484 alGAA~lA~~a~~~~~~G~~~~~~~a~---~~~~~~~~~~~~P~~~~~~~~~~~~Y~~~y~~y~~l~~~l 550 (557)
++|+|+-|++|+++...|.+-.+..-. +....+.+-..+|.+.+ .+.|..+.++|+++.+.+
T Consensus 480 ~lG~A~ra~ya~~~~~~~~~vp~~~~~~~~~~~p~~~~L~~~p~~~~-----~e~Y~~ll~~~~e~e~~l 544 (545)
T KOG2531|consen 480 ALGGAYRAAYALLGDSFGIFVPFSNKTNYLSLTPSKLELACEPDSAN-----WEIYGPLLKRLSELEDTL 544 (545)
T ss_pred hHHHHHHHHHHHHhccccccccceeeccccccCCccceeeecCCcch-----HHHHHHHHHHHHHHHHhh
Confidence 999999999997664444432222111 11112345567888888 999999999999988754
No 22
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=1.7e-54 Score=430.81 Aligned_cols=243 Identities=26% Similarity=0.388 Sum_probs=221.9
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDL 88 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~ 88 (557)
|+||||+||||+|++|||.+|+++++.+++++...+.++ +.||||+ +||++++.+++++.+. .++
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g---~~e~d~~----------~~~~~~~~~~~~~~~~~~~~~ 67 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPG---WAEQDPD----------EIWEAICEALKELLSQAGIDP 67 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTT---EEEE-HH----------HHHHHHHHHHHHHHHHCTSCG
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeecccccc---ccccChH----------HHHHHHHHHHHHHHhhcCccc
Confidence 789999999999999999999999999999998887775 4888888 9999999999998875 567
Q ss_pred CCeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHHhCChHHHHHHhCCC
Q 008692 89 SKVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKAVGGALELSKLTGSR 168 (557)
Q Consensus 89 ~~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~tG~~ 168 (557)
.+|.+|+||+|++++|++|++|+| ++|+|+|+|+|+.++++++.+.. ..+++++.||.+
T Consensus 68 ~~I~aI~is~~~~~~v~~D~~~~p--------------------l~~~i~w~D~R~~~~~~~l~~~~-~~~~~~~~tG~~ 126 (245)
T PF00370_consen 68 EQIKAIGISGQGHGLVLLDKDGKP--------------------LRPAILWMDTRAAEEAEELNEEG-SPEEIYEKTGLP 126 (245)
T ss_dssp GGEEEEEEEE-SSEEEEEETTSSB--------------------SSCEE-TT-CTTHHHHHHHHHHT-HHHHHHHHHSS-
T ss_pred ceeEEEEeccccCCcceecccccc--------------------ccccccccccchhhHHHHHHhhc-Ccceeeeecccc
Confidence 899999999999999999999998 48999999999999999999864 358899999999
Q ss_pred CCCCChHHHHHHHhhhCChhhhcccceeechhhHHHHHhCCcccccccccccccccccCCCCCcHHHHHHcCCchhhhcC
Q 008692 169 GYERFTGPQIRKLFQTQPGVYDDTERISVVSSFMASLLIGAYACIDETDAAGMNLMDIRQRVWSKIVLEATAPSLEEKLG 248 (557)
Q Consensus 169 ~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~d~s~As~t~l~d~~~~~W~~~ll~~~g~~~~~~LP 248 (557)
+++.++++||+||++|+||+|+++++|++++|||.|+|||+.+ +|+|+||+|++||+++++|++++++.+|.+ .++||
T Consensus 127 ~~~~~~~~kl~wl~~~~p~~~~~~~~~~~~~dyl~~~LtG~~~-~d~s~as~tgl~d~~~~~w~~~~l~~~gi~-~~~lP 204 (245)
T PF00370_consen 127 LSPGYPLAKLLWLKENEPEIFEKAAKFLTLSDYLAYKLTGRAA-TDYSNASRTGLYDIRTGQWDEELLEALGIP-EELLP 204 (245)
T ss_dssp SSTTSHHHHHHHHHHHSHHHHHHHHEEEEHHHHHHHHHHSC-E-EEHHHHCTSSSEETTTTEE-HHHHHHTTSG-GGGSC
T ss_pred ccccchHHHHHHHHHhCchhhhhhhhcccHHHHHHhhcccccc-ccccchhccccccccccccCHHHHHhhCCC-hhhCC
Confidence 9999999999999999999999999999999999999999997 999999999999999999999999999943 68999
Q ss_pred CcccCCccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhc
Q 008692 249 KLAPAHAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAG 289 (557)
Q Consensus 249 ~i~~~~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g 289 (557)
+|+++++++|++++++|+++||++|+||++|++|++||++|
T Consensus 205 ~i~~~g~~~G~~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 205 EIVPPGEIIGTLTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp EEE-TTSEEEEEEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred cEecCCCeeEEECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 99999999999999999999999999999999999999987
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.97 E-value=8.6e-32 Score=258.76 Aligned_cols=184 Identities=23% Similarity=0.292 Sum_probs=155.7
Q ss_pred EEEEecccceeccccCCCCCCCccee--ecCccCCCcEEEEEEeechhhHHHHHHHHhcC-------ch-HHHHH-HHHh
Q 008692 298 LAISLGTSDTVFGITDDPEPRLEGHV--FPNPVDTKGYMIMLVYKNASLTREDVRNRCAE-------KS-WDVFN-KYLQ 366 (557)
Q Consensus 298 ~~~~~GTs~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~~-------~~-~~~l~-~~a~ 366 (557)
+++|+|||+++..++++|..+..+.. +.....++.|++++.++++|..++|+++.+.. .. ++.+. ....
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEAA 80 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHhh
Confidence 47899999999998888875444322 22112467899999999999999999998531 11 23333 2233
Q ss_pred cCCCCCCCeEeEeccCCCCCCCCCCceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCC--C
Q 008692 367 QTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGL--P 444 (557)
Q Consensus 367 ~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~--~ 444 (557)
..++++++++|+|++.|+|.|. +++.++|.|.|++.+ |+++|++||++||++|.+|++++.|++ +
T Consensus 81 ~~~~~~~~~~~~p~~~G~~~p~---------~~~~~~g~~~gl~~~----~~~~~~~rAv~Egia~~~~~~~~~l~~~~~ 147 (198)
T PF02782_consen 81 ASPPGSGGVFFLPFLSGERSPY---------WDPDARGSFIGLSSD----TTRADLARAVLEGIAFSLRQILEELEELTG 147 (198)
T ss_dssp HTSSTCTTSEEEECTTGBCTTT---------BBTTHCEEEEEEETT----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCcccceeeeeccccCcccc---------cccccccccccCCcc----cCHHHHHHHHHHhHHHHHHHhhhhcccccc
Confidence 5567789999999999999998 899999999999987 789999999999999999999999974 6
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhc
Q 008692 445 SPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 445 ~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a 494 (557)
.++++|+++||++||++|+|++||++|+||.+++..|++++|||++|++|
T Consensus 148 ~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a 197 (198)
T PF02782_consen 148 IPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVA 197 (198)
T ss_dssp SCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHH
T ss_pred ccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999987
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.55 E-value=1.7e-14 Score=143.57 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCC-EEEEecCCcchhhHHHHHHHHhCCceEEecCCC-chhHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPR-RIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALR 490 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~-~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e-~~alGAA~l 490 (557)
+++++++++++++++.++..+..+. ++ +|+++||+++|+.|+|.+++.+++||.+++.++ .+|+|||++
T Consensus 178 ~~~di~~~~~~~va~~i~~~~~~~~----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 178 KKEDILAGVYESIAERVAEMLQRLK----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcC----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 6899999999999999998776542 44 799999999999999999999999999999885 899999974
No 25
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.57 E-value=8.2e-07 Score=91.49 Aligned_cols=128 Identities=12% Similarity=0.006 Sum_probs=85.6
Q ss_pred EeechhhHHHHHHHHhcCchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeecccccccccccccccccCC
Q 008692 338 VYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVKEF 417 (557)
Q Consensus 338 ~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~~~ 417 (557)
|...+|..++-+.+.++. +.++|.+++.+.. + |+-.+.++-. | .++.. +-=+... .
T Consensus 299 CAAGTGrFLE~mA~~Lgi-~leEl~~lA~~a~---~-----pv~ISS~CtV-----F---AESEV---Islla~G----~ 354 (432)
T TIGR02259 299 CAAGCGRYLGYIADEMNM-GLHELGPLAMKSS---K-----PARINSTCTV-----F---AGAEL---RDRLALG----D 354 (432)
T ss_pred ccccchHHHHHHHHHcCC-CHHHHHHHHhcCC---C-----CCCcCCcceE-----E---ehHHH---HHHHHCC----C
Confidence 445578888888887753 5677777765432 0 1111222221 1 11110 0001111 4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh-----CCceEEecCCC-chhHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY-----GCDIYTVQRPD-SASLGAALRA 491 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl-----g~pv~~~~~~e-~~alGAA~lA 491 (557)
++++++.++..+++-.+...+..+.. .-+.|.++||.++|+.+.+.+.+.+ +.+|.+++..+ .+|+|||+.|
T Consensus 355 ~reDIaAGL~~SIA~Rv~s~l~r~~~--i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 355 KREDILAGLHRAIILRAISIISRSGG--ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccC--CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 79999999999999887777665531 2257999999999999999999999 57888887665 8899999975
No 26
>PRK13317 pantothenate kinase; Provisional
Probab=97.90 E-value=0.00025 Score=71.54 Aligned_cols=166 Identities=10% Similarity=0.013 Sum_probs=100.9
Q ss_pred cEEEEecccceeccccCCCCCCCcceeecCccCCCcEEEEEEeechhhHHHHHHHHh-cCchHHHHHHHHhcCCCCCCCe
Q 008692 297 DLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGGK 375 (557)
Q Consensus 297 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~-~~~~~~~l~~~a~~~~~g~~gl 375 (557)
.+.++.||...+..+.+. .+...+.+..||..+.=+...+ +..++++|.+++.+-.+-.-.+
T Consensus 98 ~~i~~iG~g~si~~~~g~-----------------~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl 160 (277)
T PRK13317 98 YIFTNIGTGTSIHYVDGN-----------------SQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDL 160 (277)
T ss_pred EEEEEecCceEEEEEeCC-----------------ceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccc
Confidence 467788887654433211 2333333434554554455555 3478999999997633211112
Q ss_pred EeEeccCCCC-CCC--CCC-ceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Q 008692 376 MGFYYKEHEI-LPP--LPV-GFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRII 451 (557)
Q Consensus 376 ~~lP~l~Ger-~P~--~~~-g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~ 451 (557)
.+-.+.|.. .|. +.. +.|+ . ++--++.. ..++|++++++..++..+-...-.+.+...+++|+
T Consensus 161 -~v~dIy~~~~~~l~i~s~csvFa-------k-v~~l~~~g----~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Iv 227 (277)
T PRK13317 161 -KVGDIYKGPLPPIPGDLTASNFG-------K-VLHHLDSE----FTSSDILAGVIGLVGEVITTLSIQAAREKNIENIV 227 (277)
T ss_pred -eeccccCCCCCCCCCceeEehhh-------h-hhhhhccC----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 223333321 122 211 1221 1 11112222 47999999999999888877643322223457999
Q ss_pred Eec-CCcchhhHHHHHHHHh---CCceEEecCCC-chhHHHHHHHH
Q 008692 452 ATG-GASANQTILSCLASIY---GCDIYTVQRPD-SASLGAALRAA 492 (557)
Q Consensus 452 ~~G-Gga~s~~w~Qi~Advl---g~pv~~~~~~e-~~alGAA~lA~ 492 (557)
++| |.++++..++.+.+.+ +.++..++.++ .+|+|||+.|.
T Consensus 228 f~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 228 YIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred EECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 999 6789999999999999 78888887654 89999999875
No 27
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.85 E-value=6.7e-05 Score=77.36 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCcEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcC-
Q 008692 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSL- 86 (557)
Q Consensus 8 ~~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~- 86 (557)
+..+++|||||.|++|++++|.+|+++.+.+.+++.. .+.+ .+.+.+.+.++++.+..
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~-----------~~~~----------~~~~~i~~~i~~~~~~~~ 62 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTP-----------DPEE----------AILEAILALVAELLKQAQ 62 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCC-----------Cchh----------HHHHHHHHHHHHHHHhcC
Confidence 4568999999999999999999999999988887631 1113 67777777777766542
Q ss_pred CCCCeeEEEEeccccceEEEcCCCccc-cccCC--CCCCcccccccccCCCCCccccCCCcHHHH
Q 008692 87 DLSKVTAVSGSGQQHGSVYWKKGSATI-LSSLD--PKKPLVDQLGDAFSTKESPVWMDSSTTAQC 148 (557)
Q Consensus 87 ~~~~I~aIgis~~~~~~v~vD~~g~pl-~~~~d--~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~ 148 (557)
...++.+||+++.+ .+|...... ...+. .+.+|++.|++.|+ .|+.+.+|..+....
T Consensus 63 ~~~~~iGIgi~~pg----~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~Pv~veNDan~aala 122 (314)
T COG1940 63 GRVAIIGIGIPGPG----DVDNGTVIVPAPNLGWWNGVDLAEELEARLG-LPVFVENDANAAALA 122 (314)
T ss_pred CcCceEEEEeccce----eccCCcEEeecCCCCccccccHHHHHHHHHC-CCEEEecHHHHHHHH
Confidence 23456777776644 444433110 01111 11245555555544 255555555544433
No 28
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=97.85 E-value=0.0041 Score=66.86 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHc----CC-C---CCCCEEEEecCCcchhhHHHHHHHHhCCceEEec
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERF----GL-P---SPPRRIIATGGASANQTILSCLASIYGCDIYTVQ 478 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l----~~-~---~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~ 478 (557)
.-.+++++-+|.+.-.++..++.+ .. + ..+..|+++||+|+-+...++++++|+.||.+..
T Consensus 292 ~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~ 360 (420)
T PRK09472 292 TLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA 360 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeC
Confidence 356677888888877777766533 22 2 3467899999999999999999999999999843
No 29
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.61 E-value=0.0002 Score=71.66 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=50.0
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
++||||+|.|++|++++|.+|+++.+.+.+.+ ..+++ +..+.+.+++++.... ...
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~------------~~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP------------REDYP----------QLLQILRDLTEEADTY--CGV 56 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC------------CcCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 47999999999999999999999977665442 12344 6777777766655321 233
Q ss_pred eeEEEEeccccceEEEcCC
Q 008692 91 VTAVSGSGQQHGSVYWKKG 109 (557)
Q Consensus 91 I~aIgis~~~~~~v~vD~~ 109 (557)
+.+|||+..+ ++|.+
T Consensus 57 ~~gIgv~~pG----~vd~~ 71 (256)
T PRK13311 57 QGSVGIGIPG----LPNAD 71 (256)
T ss_pred CceEEEEecC----cEECC
Confidence 4588888766 56765
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.61 E-value=0.033 Score=58.85 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHcCCCCCCCE-EEEecCCcchhhHHHHHHHHhCCceEEecC
Q 008692 419 PPSEVRALVEGQFLSMR-GHAERFGLPSPPRR-IIATGGASANQTILSCLASIYGCDIYTVQR 479 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r-~~~~~l~~~~~~~~-i~~~GGga~s~~w~Qi~Advlg~pv~~~~~ 479 (557)
-.+++++.++-+.-.++ ..++.......+++ |+++||+|+.+...+++.+.|+.||++...
T Consensus 285 l~~ii~~~~~ei~~~i~~~~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P 347 (371)
T TIGR01174 285 LAEIIEARAEEILEIVKQKELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLP 347 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECC
Confidence 34455556666655554 55544322134555 999999999999999999999999998754
No 31
>PRK09698 D-allose kinase; Provisional
Probab=97.59 E-value=0.00037 Score=71.46 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=52.8
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLS 89 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 89 (557)
.+++|||+|.|.+|++++|.+|+++.+...+.+. ..+++ . .+.+.+.++++.+.. ..
T Consensus 4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-----------~~~~~----------~-~~~l~~~i~~~~~~~-~~ 60 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-----------VIAPD----------L-VSGLGEMIDEYLRRF-NA 60 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-----------ccchH----------H-HHHHHHHHHHHHHHc-CC
Confidence 5899999999999999999999999876655431 11222 3 555555565554432 25
Q ss_pred CeeEEEEeccccceEEEcCCCc
Q 008692 90 KVTAVSGSGQQHGSVYWKKGSA 111 (557)
Q Consensus 90 ~I~aIgis~~~~~~v~vD~~g~ 111 (557)
+|.+|||+..+ ++|.++.
T Consensus 61 ~i~gigia~pG----~vd~~~g 78 (302)
T PRK09698 61 RCHGIVMGFPA----LVSKDRR 78 (302)
T ss_pred CeeEEEEeCCc----ceeCCCC
Confidence 79999999977 6676543
No 32
>PRK09557 fructokinase; Reviewed
Probab=97.51 E-value=0.00035 Score=71.64 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=52.5
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
++||||+|.|++|++++|.+|+++.+.+.+.+ .++++ ...+.+.+.++++.+. ...
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~------------~~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP------------RDDYQ----------QTIEAIATLVDMAEQA--TGQ 56 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC------------CCCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 47999999999999999999999887655432 12444 6777777777665432 235
Q ss_pred eeEEEEeccccceEEEcCC-Cc
Q 008692 91 VTAVSGSGQQHGSVYWKKG-SA 111 (557)
Q Consensus 91 I~aIgis~~~~~~v~vD~~-g~ 111 (557)
+.+|||+..+ ++|++ |.
T Consensus 57 ~~gIgi~~pG----~vd~~~g~ 74 (301)
T PRK09557 57 RGTVGVGIPG----SISPYTGL 74 (301)
T ss_pred ceEEEecCcc----cCcCCCCe
Confidence 6789998877 56754 54
No 33
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.47 E-value=0.00035 Score=71.69 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=50.9
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
+++|||+|.|++|++++|.+|+++.+.+.+.+ ..+++ .+.+.+.+.++++... ...
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~------------~~~~~----------~~~~~i~~~i~~~~~~--~~~ 56 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP------------RDSYD----------AFLDAVCELVAEADQR--FGC 56 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC------------CcCHH----------HHHHHHHHHHHHHHhh--cCC
Confidence 36999999999999999999999987754432 11344 7778887777765432 223
Q ss_pred eeEEEEeccccceEEEcCC
Q 008692 91 VTAVSGSGQQHGSVYWKKG 109 (557)
Q Consensus 91 I~aIgis~~~~~~v~vD~~ 109 (557)
+.+|||+..+ ++|.+
T Consensus 57 ~~~igia~pG----~vd~~ 71 (303)
T PRK13310 57 KGSVGIGIPG----MPETE 71 (303)
T ss_pred cceEEEeCCC----cccCC
Confidence 4578888876 56754
No 34
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.40 E-value=0.00018 Score=60.74 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.6
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeee
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~ 40 (557)
+||||+|.|.+|++++|.+|+++.....+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~ 31 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVI 31 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEE
Confidence 79999999999999999999988765543
No 35
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.35 E-value=0.00058 Score=68.85 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceE-EecCC-CchhHHHHHHHHhc
Q 008692 417 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIY-TVQRP-DSASLGAALRAAHG 494 (557)
Q Consensus 417 ~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~-~~~~~-e~~alGAA~lA~~a 494 (557)
.+++++++++.++++-.+...+..+. --+.|.++||.++|+.+.+.+.+.||++|. ++..+ ..+|+|||++|...
T Consensus 213 ~~~edI~aGl~~sia~rv~~~~~~~~---i~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 213 YTKNMVIAAYCQAMAERVVSLLERIG---VEEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcccC---CCCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHHH
Confidence 47999999999999977655544432 125699999999999999999999999998 44433 48899999998653
No 36
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.35 E-value=0.00095 Score=68.47 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=88.2
Q ss_pred EEEeechhhHHHHHHHHhcCchHHHHHHHHhcCCCCCCCeEeEeccCCCCCCCCCCceeeeeeccccccccccccccccc
Q 008692 336 MLVYKNASLTREDVRNRCAEKSWDVFNKYLQQTPPLNGGKMGFYYKEHEILPPLPVGFHRYILENFEGETLDGVNEVEVK 415 (557)
Q Consensus 336 ~~~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~~~~g~~gl~~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~Gl~~~~~~ 415 (557)
..|...+|+.++-+.+.++ .+.++|.+.+.+..+- + -+ +.++- +| .++.. +.=+...
T Consensus 258 ~~CAAGtGrFLE~~A~~Lg-v~v~E~~~~A~~~~~~---v----~i-~S~Ca-----VF---~eSev---i~~~~~G--- 314 (396)
T COG1924 258 DKCAAGTGRFLEVIARRLG-VDVEELGKLALKATPP---V----KI-NSRCA-----VF---AESEV---ISALAEG--- 314 (396)
T ss_pred cccccccchHHHHHHHHhC-CCHHHHHHHHhcCCCC---c----cc-CCeeE-----EE---ehHHH---HHHHHcC---
Confidence 3466678889999988885 4788999988764320 0 11 11111 11 01100 0001111
Q ss_pred CCChhhHHHHHHHHHHHHHHH-HHHHcCCCCCCCE-EEEecCCcchhhHHHHHHHHhCCceEEecCCC-chhHHHHHHHH
Q 008692 416 EFDPPSEVRALVEGQFLSMRG-HAERFGLPSPPRR-IIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRAA 492 (557)
Q Consensus 416 ~~~~~~l~rAvlEgia~~~r~-~~~~l~~~~~~~~-i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e-~~alGAA~lA~ 492 (557)
.+++++..++.++++-++.. .+.. .++++ |++.||-+.|......+.|.+|++|.+++..+ .+|+|||++|.
T Consensus 315 -~~~EdI~AGl~~Sv~~~v~~~~~~~----~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 315 -ASPEDILAGLAYSVAENVAEKVIKR----VDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHhhc----cCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHh
Confidence 47999999988888876654 3332 23433 99999999999999999999999999998666 88999999985
Q ss_pred h
Q 008692 493 H 493 (557)
Q Consensus 493 ~ 493 (557)
.
T Consensus 390 ~ 390 (396)
T COG1924 390 E 390 (396)
T ss_pred h
Confidence 3
No 37
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.32 E-value=0.00071 Score=69.82 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=53.8
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCCCC
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~~ 90 (557)
||||+|.|.+|++++|.+|+++.+...+.+ .+++ .+.+.+.+.++++.+. ....+
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~-------------~~~~----------~~~~~l~~~i~~~~~~~~~~~~~ 57 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD-------------TTPE----------TIVDAIASAVDSFIQHIAKVGHE 57 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC-------------CCHH----------HHHHHHHHHHHHHHHhcCCCccc
Confidence 699999999999999999999887655432 1344 6777777777776554 34568
Q ss_pred eeEEEEeccccceEEEcCC-Cc
Q 008692 91 VTAVSGSGQQHGSVYWKKG-SA 111 (557)
Q Consensus 91 I~aIgis~~~~~~v~vD~~-g~ 111 (557)
|.+|||+..+ ++|.+ |.
T Consensus 58 i~gIgva~pG----~vd~~~g~ 75 (318)
T TIGR00744 58 IVAIGIGAPG----PVNRQRGT 75 (318)
T ss_pred eEEEEEeccc----cccCCCCE
Confidence 9999999876 56754 54
No 38
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.30 E-value=0.00031 Score=66.07 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=52.1
Q ss_pred EEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCeeE
Q 008692 14 GFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVTA 93 (557)
Q Consensus 14 gIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I~a 93 (557)
|||+|.++++++++|.+|+++.+.+.+++ .+++ .+.+.+.+.++++.+.. ... +
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~-------------~~~~----------~~~~~l~~~i~~~~~~~--~~~-g 54 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP-------------TSPE----------ELLDALAELIERLLADY--GRS-G 54 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH-------------SSHH----------HHHHHHHHHHHHHHHHH--TCE-E
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC-------------CCHH----------HHHHHHHHHHHHHHhhc--ccc-c
Confidence 79999999999999999999998887764 1333 78888888888876541 112 8
Q ss_pred EEEeccccceEEEcCCC
Q 008692 94 VSGSGQQHGSVYWKKGS 110 (557)
Q Consensus 94 Igis~~~~~~v~vD~~g 110 (557)
|||+..+ ++|.+.
T Consensus 55 Igi~~pG----~v~~~~ 67 (179)
T PF00480_consen 55 IGISVPG----IVDSEK 67 (179)
T ss_dssp EEEEESS----EEETTT
T ss_pred EEEeccc----cCcCCC
Confidence 9998877 788763
No 39
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.10 E-value=0.0014 Score=68.73 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=60.7
Q ss_pred CChhhHHHHHHHHHHHHHHH-HHHHcCCCCCC-CEEEEecCCcchhhHHHHHHHHhCCceEEecCCC-chhHHHHHHH
Q 008692 417 FDPPSEVRALVEGQFLSMRG-HAERFGLPSPP-RRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRA 491 (557)
Q Consensus 417 ~~~~~l~rAvlEgia~~~r~-~~~~l~~~~~~-~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e-~~alGAA~lA 491 (557)
.+++|++.++..+|+-.+.. .++.+ .+ +.|.++||.++|+.....+.+.+|.++.+++.++ .+|+|||++|
T Consensus 328 ~~~eDIaAGl~~SIa~rv~~~l~~~~----~i~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 328 ASPEDVAAAACHSVAEQVYEQQLQEI----DVREPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcC----CCCCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 47999999999999988764 34433 23 4599999999999999999999999999998776 8899999987
No 40
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.08 E-value=0.017 Score=58.17 Aligned_cols=167 Identities=16% Similarity=0.053 Sum_probs=96.2
Q ss_pred EEEEecccceeccccCCCCCCCcceeecCccCCCcEEEEEEeechhhHHHHHHHHhc-CchHHHHHHHHhcCCCCCCCeE
Q 008692 298 LAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCA-EKSWDVFNKYLQQTPPLNGGKM 376 (557)
Q Consensus 298 ~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~-~~~~~~l~~~a~~~~~g~~gl~ 376 (557)
+.+++||+..+..+.. + .+..++.+..||..+-=+...+. ..+++++.++|++-.+-.-. +
T Consensus 104 llvnIGsGvSi~~v~~----------------~-~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vD-l 165 (279)
T TIGR00555 104 LLVNIGTGTSILYVDG----------------D-NYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVD-L 165 (279)
T ss_pred EEEEecCCeEEEEEcC----------------c-cEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccc-c
Confidence 6778898865443321 1 23333334445544434445543 37899999999864321111 2
Q ss_pred eEeccCCCCCCCCCCceeeeeecccccccccc-ccc-ccccCCChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEec
Q 008692 377 GFYYKEHEILPPLPVGFHRYILENFEGETLDG-VNE-VEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATG 454 (557)
Q Consensus 377 ~lP~l~Ger~P~~~~g~~~~~~~~~~~g~~~G-l~~-~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~G 454 (557)
..-.+.|...+. . ++..+.-++-+| +.. ......+++|++++++..|+.++-.+.-........++|+..|
T Consensus 166 ~V~dIYg~~y~~-----~--~L~~d~iASsfGkv~~~~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~G 238 (279)
T TIGR00555 166 LVGDIYGGDYSE-----S--GLDGSLTASSFGKVLSKHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIG 238 (279)
T ss_pred ccccccCCCCCC-----C--CCCcceeeeccchhhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 233444432221 0 011222222233 110 0001247999999999999997766544222224578999999
Q ss_pred C-CcchhhHHHHHHHHhC---CceEEecCC-CchhHHHHH
Q 008692 455 G-ASANQTILSCLASIYG---CDIYTVQRP-DSASLGAAL 489 (557)
Q Consensus 455 G-ga~s~~w~Qi~Advlg---~pv~~~~~~-e~~alGAA~ 489 (557)
| ...++..++.++..++ ..+..++.. ..+|+|||+
T Consensus 239 g~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 239 SFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 9 5688999999998876 445566644 488999986
No 41
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.08 E-value=0.0018 Score=66.08 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=46.7
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCe
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I 91 (557)
+||||+|.+.++++++|.+|+++...+.+++. ..+++ .+.+.+.+.++++.+ ++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~~-----------~~~~~----------~~~~~i~~~i~~~~~-----~~ 56 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTPA-----------SQTPE----------ALRQALSALVSPLQA-----QA 56 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCCC-----------CCCHH----------HHHHHHHHHHHHhhh-----cC
Confidence 79999999999999999999999876655431 12344 677777777766532 45
Q ss_pred eEEEEeccc
Q 008692 92 TAVSGSGQQ 100 (557)
Q Consensus 92 ~aIgis~~~ 100 (557)
.+|||+..+
T Consensus 57 ~~igi~~pG 65 (291)
T PRK05082 57 DRVAVASTG 65 (291)
T ss_pred cEEEEeCcc
Confidence 688888866
No 42
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.05 E-value=0.0019 Score=65.18 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=43.3
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~ 87 (557)
.+++|||+|+|++|++|+| +++++.....+.. + +| .++..++++++.+. ..
T Consensus 32 m~~~GIDiGStt~K~Vlld-~~~i~~~~~~~tg-------~------~~-------------~~~a~~~l~~~l~~~g~~ 84 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-DGELYGYNSMRTG-------N------NS-------------PDSAKNALQGIMDKIGMK 84 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-CCEEEEEEeecCC-------C------CH-------------HHHHHHHHHHHHHHcCCc
Confidence 3899999999999999999 4666655443321 1 22 23344555554443 33
Q ss_pred CCCeeEEEEeccccc
Q 008692 88 LSKVTAVSGSGQQHG 102 (557)
Q Consensus 88 ~~~I~aIgis~~~~~ 102 (557)
..+|..+++||.+..
T Consensus 85 ~~~v~~~~~TGyGr~ 99 (293)
T TIGR03192 85 LEDINYVVGTGYGRV 99 (293)
T ss_pred ccceEEEEEECcchh
Confidence 457999999998743
No 43
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.90 E-value=0.0024 Score=72.47 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE-ecCCCchhHHHHHHHHhc
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
+.++..+++-+.-.++..++.-.. ...++.|+++||++|.|.+.+++.++||.++.. ....|+.|+|||+.|+.-
T Consensus 301 E~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 301 ESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhh
Confidence 344444555444444444443221 246889999999999999999999999986554 456679999999999986
No 44
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.89 E-value=0.003 Score=66.26 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=21.2
Q ss_pred EeechhhHHHHHHHHhcCchHHHHHHHHhc
Q 008692 338 VYKNASLTREDVRNRCAEKSWDVFNKYLQQ 367 (557)
Q Consensus 338 ~~~~~G~~~~W~~~~~~~~~~~~l~~~a~~ 367 (557)
|...+|..++-+.+.++ .++++|.+++.+
T Consensus 272 CAAGTGrFLE~~A~~Lg-i~ieEl~~lA~~ 300 (404)
T TIGR03286 272 CAGASGRFLEMTAKRLG-VDITELGKLALK 300 (404)
T ss_pred ccccCcHHHHHHHHHhC-CCHHHHHHHHHh
Confidence 44557888888888774 477888887765
No 45
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.87 E-value=0.0044 Score=61.64 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=56.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhC-Cc----eEEecCC-CchhHHHHHH
Q 008692 417 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG-CD----IYTVQRP-DSASLGAALR 490 (557)
Q Consensus 417 ~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg-~p----v~~~~~~-e~~alGAA~l 490 (557)
..+++++.++..+++-.+...+..+. ..-++|.++||.++|+...+.+.+.++ .+ |.+++.+ ..+|+|||++
T Consensus 184 ~~~edI~aGl~~sia~r~~~~~~~~~--~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~ 261 (262)
T TIGR02261 184 ISAPNILKGIHESMADRLAKLLKSLG--ALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALW 261 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccC--CCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHc
Confidence 47999999999999987766666553 223469999999999999999999984 23 3333333 4789999997
Q ss_pred H
Q 008692 491 A 491 (557)
Q Consensus 491 A 491 (557)
|
T Consensus 262 ~ 262 (262)
T TIGR02261 262 G 262 (262)
T ss_pred C
Confidence 5
No 46
>CHL00094 dnaK heat shock protein 70
Probab=96.84 E-value=0.0029 Score=71.50 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHhCCceEEe-cCCCchhHHHHHHHHhc
Q 008692 445 SPPRRIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALRAAHG 494 (557)
Q Consensus 445 ~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~-~~~e~~alGAA~lA~~a 494 (557)
..++.|+++||++|.|.+.++++++||.++... ...|+.|+|||+.|+..
T Consensus 327 ~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 327 SDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred hhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHh
Confidence 478899999999999999999999999876543 45679999999999987
No 47
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.59 E-value=0.006 Score=60.74 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=42.3
Q ss_pred EEEEEEccCCceEEEEEcCCCCEE-EEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIV-ASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LD 87 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v-~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~ 87 (557)
+++|||+|+|++|++|+|.+++.+ ......+++ .++ + -.++..++++++.+. ..
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~----~~~------~-------------~~~~~~~~l~~~~~~~g~~ 58 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRI----RQR------D-------------PFKLAEDAYDDLLEEAGLA 58 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecC----CCC------C-------------HHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999765432 222333321 111 2 233344555555443 34
Q ss_pred CCCeeEEEEecccc
Q 008692 88 LSKVTAVSGSGQQH 101 (557)
Q Consensus 88 ~~~I~aIgis~~~~ 101 (557)
..+|..|+.||.+.
T Consensus 59 ~~~i~~i~~TGYGR 72 (262)
T TIGR02261 59 AADVAYCATTGEGE 72 (262)
T ss_pred hhheEEEEEECCch
Confidence 46899999999763
No 48
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.58 E-value=0.0038 Score=61.80 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCC-CchhHHHHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRP-DSASLGAAL 489 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~-e~~alGAA~ 489 (557)
..++++..++.+.-.++..++. .+++.|+++||+|+.+.+.+.+.+.||.||.++..+ +++|+|||+
T Consensus 171 ~~~~i~~~~~~i~~~i~~~l~~----~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 171 IFPVVKPVYQKMASIVKRHIEG----QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 4456677777777777776663 356899999999999999999999999999987654 589999986
No 49
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.58 E-value=0.0054 Score=61.82 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCC-chhHHHHHHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRA 491 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e-~~alGAA~lA 491 (557)
-.++++..+|-+.-.++..++. .+++.|+++||+|+.+-+.+++.+.||.||.++..++ .+++|+|+.+
T Consensus 198 ~~~ii~~~~~~i~~~i~~~l~~----~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 198 IFPVVKPVVEKMASIVARHIEG----QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 4567777777777777766653 3678999999999999999999999999999987664 8999999853
No 50
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.58 E-value=0.0061 Score=69.07 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCC-ceEEecCCCchhHHHHHHHHhc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGC-DIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~-pv~~~~~~e~~alGAA~lA~~a 494 (557)
-+.+.+.+++-+.-.++..++.-.. ...++.|+++||.+|.|...+++.+.||. |+...+..|+.|+|||+.|+.-
T Consensus 325 fe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l 402 (657)
T PTZ00186 325 FEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVL 402 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHh
Confidence 4455666666666666666654332 34789999999999999999999999998 5555567789999999999865
No 51
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.32 E-value=0.0099 Score=67.34 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE-ecCCCchhHHHHHHHHhc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
-+.++..+++-+.-.++..++.... ...++.|+++||++|.|.+.+++.+.||.++.. .+..++.|+|||+.|+.-
T Consensus 298 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l 375 (627)
T PRK00290 298 FEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVL 375 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHh
Confidence 3444555566555555555554432 346899999999999999999999999987754 346679999999999875
No 52
>PRK00292 glk glucokinase; Provisional
Probab=96.11 E-value=0.0088 Score=61.76 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCCC-EEEEecCCcc-h-hhHHH-----H------HHHH-hCCceEEecCCCchhH
Q 008692 421 SEVRALVEGQFLSMRGHAERFGLPSPPR-RIIATGGASA-N-QTILS-----C------LASI-YGCDIYTVQRPDSASL 485 (557)
Q Consensus 421 ~l~rAvlEgia~~~r~~~~~l~~~~~~~-~i~~~GGga~-s-~~w~Q-----i------~Adv-lg~pv~~~~~~e~~al 485 (557)
.++.-..+.++..+..++..+ .++ .|++.||.+. + +.+.. - +.+. -..||......+++.+
T Consensus 232 ~~~~~~~~~lg~~i~~l~~~~----~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~ 307 (316)
T PRK00292 232 RTLSLFCVILGRVAGNLALTL----GARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLL 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHH
Confidence 344445555555555555554 355 7889888873 3 32222 1 2223 2567777667789999
Q ss_pred HHHHHHHh
Q 008692 486 GAALRAAH 493 (557)
Q Consensus 486 GAA~lA~~ 493 (557)
|||.++..
T Consensus 308 GAa~~~~~ 315 (316)
T PRK00292 308 GAGAYLRQ 315 (316)
T ss_pred HHHHHHhc
Confidence 99988753
No 53
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.08 E-value=0.017 Score=65.29 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE-ecCCCchhHHHHHHHHhc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
.-+.++..+++.+.-.++..++.... ...++.|+++||++|.|...+++++.||.++.. .+..++.|+|||+.|+.-
T Consensus 299 efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l 377 (616)
T PRK05183 299 QFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADIL 377 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHh
Confidence 34555666666666666666655432 346899999999999999999999999986543 456679999999999864
No 54
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.05 E-value=0.017 Score=65.12 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEe-cCCCchhHHHHHHHHhc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALRAAHG 494 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~-~~~e~~alGAA~lA~~a 494 (557)
-+.++.-+++.+.-.++..++.-.. ...++.|+++||++|.|...+++.+.||.++... +..|+.|+|||+.|+.-
T Consensus 296 fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l 373 (595)
T TIGR02350 296 FEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVL 373 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHh
Confidence 3444555555555555555544332 2468899999999999999999999999876643 46679999999999875
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.04 E-value=0.018 Score=59.39 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=46.8
Q ss_pred CCcEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCC
Q 008692 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (557)
Q Consensus 8 ~~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~ 87 (557)
+..++||||.|+|.+|++|.+.++.++.......+ + +| .-.+++.++++++- ..
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~------g-------~p-----------~~~~~l~~~le~l~--~~ 186 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTK------G-------RP-----------IAEKALKEALEELG--EK 186 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeCCCeEEEEEEEcCC------C-------Ch-----------hHHHHHHHHHHHcc--cC
Confidence 34689999999999999999988756554433321 1 11 12333444444443 23
Q ss_pred CCCeeEEEEeccccceE
Q 008692 88 LSKVTAVSGSGQQHGSV 104 (557)
Q Consensus 88 ~~~I~aIgis~~~~~~v 104 (557)
..+|.++++||.+...+
T Consensus 187 ~~~I~~~~~TGYGR~~v 203 (396)
T COG1924 187 LEEILGLGVTGYGRNLV 203 (396)
T ss_pred hheeeeeeeecccHHHh
Confidence 47899999999986654
No 56
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.01 E-value=0.023 Score=63.80 Aligned_cols=75 Identities=24% Similarity=0.219 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEe-cCCCchhHHHHHHHHhc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALRAAHG 494 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~-~~~e~~alGAA~lA~~a 494 (557)
-+.+++-+++-+.-.++..++... ...++.|+++||.++.|...+++.+.||+++... +..++.|+|||+.|+.-
T Consensus 282 fe~l~~~l~~~~~~~i~~~L~~a~-~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l 357 (595)
T PRK01433 282 LEQLILPLVERTINIAQECLEQAG-NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENL 357 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHh
Confidence 444555555555555555444433 2468999999999999999999999999877653 46679999999999864
No 57
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.00 E-value=0.018 Score=64.84 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE-ecCCCchhHHHHHHHHhc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
-+.++.-+++-+.-.++..++.... ...++.|+++||+++.|...+++.+.|+.++.. .+..++.|+|||+.|+.-
T Consensus 284 fe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l 361 (599)
T TIGR01991 284 FEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLL 361 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHh
Confidence 3444555555555555555554332 346899999999999999999999999986554 456679999999999874
No 58
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=95.98 E-value=0.015 Score=60.67 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC---CCCCC-EEEEecCCcchhhHHHHHHHHhCCceEEec-CCCchhHHHHHHHHh
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL---PSPPR-RIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 493 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~---~~~~~-~i~~~GGga~s~~w~Qi~Advlg~pv~~~~-~~e~~alGAA~lA~~ 493 (557)
-.+++...++.+.-.++..++.... ...++ .|+++||+|+-|...+++++.|+.||.+.. ..++.|+|||+.+..
T Consensus 244 ~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 244 IREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhc
Confidence 3455666677777777777776542 12344 699999999999999999999999999876 556889999999765
No 59
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=95.93 E-value=0.013 Score=65.99 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEe-cCCCchhHHHHHHHHhc
Q 008692 421 SEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALRAAHG 494 (557)
Q Consensus 421 ~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~-~~~e~~alGAA~lA~~a 494 (557)
.++.-+++-+.-.+..+++.... ...++.|.++||+++.|...+++.+.|+.++... +..++.|+|||+.|+.-
T Consensus 302 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~ 377 (602)
T PF00012_consen 302 ELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAIL 377 (602)
T ss_dssp HHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhh
Confidence 34455555555555555554432 3468899999999999999999999999877653 45678999999999865
No 60
>PRK13318 pantothenate kinase; Reviewed
Probab=95.77 E-value=0.022 Score=57.07 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=47.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~ 492 (557)
|...+...++.|.+..+...++.+++ +. .-+|+++||.++ +++..+..+..+ .++-...|-..++.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~-~~~vi~TGG~a~------~l~~~~~~~~~~--~~~Lvl~Gl~~~~~ 252 (258)
T PRK13318 185 TVEAMQSGIYYGYVGLVEGIVKRIKEELGK-DPKVIATGGLAP------LFAEESDTIDIV--DPDLTLKGLRLIYE 252 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCchH------HHHhccCCCcEE--CcccHHHHHHHHHH
Confidence 78888888999999988888888764 32 346999999975 355556555544 34566777766654
No 61
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.75 E-value=0.014 Score=58.88 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcC-C-CCCCCEEEEecCCcchhhHHHHH-----HHHhCCceEEecC-CCchhHHHHHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFG-L-PSPPRRIIATGGASANQTILSCL-----ASIYGCDIYTVQR-PDSASLGAALR 490 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~-~-~~~~~~i~~~GGga~s~~w~Qi~-----Advlg~pv~~~~~-~e~~alGAA~l 490 (557)
.......+++..+..+...+..+. + +..-..|.++||.++|+.+..-+ ..+.+.|+.++.. ...+++|||++
T Consensus 191 gd~~a~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAall 270 (271)
T PF01869_consen 191 GDEVARDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALL 270 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHh
Confidence 344455666666666665555432 2 11212399999999997766545 5556666666654 45789999998
Q ss_pred H
Q 008692 491 A 491 (557)
Q Consensus 491 A 491 (557)
|
T Consensus 271 A 271 (271)
T PF01869_consen 271 A 271 (271)
T ss_dssp H
T ss_pred C
Confidence 7
No 62
>PLN02920 pantothenate kinase 1
Probab=95.74 E-value=0.31 Score=51.15 Aligned_cols=172 Identities=12% Similarity=0.036 Sum_probs=97.9
Q ss_pred cEEEEecccceeccccCCCCCCCcceeecCccCCCcEEEEEEeechhhHHHHHHHHhc-CchHHHHHHHHhcCCCCCCCe
Q 008692 297 DLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRCA-EKSWDVFNKYLQQTPPLNGGK 375 (557)
Q Consensus 297 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~~-~~~~~~l~~~a~~~~~g~~gl 375 (557)
-+.+++||+..+.-+.. ++.|-..+.+.-||..+-=+..++. ..+|+++.++|.+=..-.-.
T Consensus 167 yLLVNIGSGVSilkV~~----------------~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvD- 229 (398)
T PLN02920 167 YLLVNIGSGVSMIKVDG----------------DGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVID- 229 (398)
T ss_pred eEEEEcCCCEEEEEEeC----------------CCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccC-
Confidence 47789999865433221 2345555555556666644555543 47899999998752221111
Q ss_pred EeEeccCCCC-CCCCCCceeeeeecccccccccc--ccc-ccccCCChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Q 008692 376 MGFYYKEHEI-LPPLPVGFHRYILENFEGETLDG--VNE-VEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRII 451 (557)
Q Consensus 376 ~~lP~l~Ger-~P~~~~g~~~~~~~~~~~g~~~G--l~~-~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~ 451 (557)
+..--+.|.. .|. ++ +..++-++-+| ... .+..+.+++|++|+++--|++++-++.-...+...+++|+
T Consensus 230 llVgDIYGg~~y~~-----~g--L~~d~iASsFGKv~~~~~~~~~~s~eDia~SLL~mVs~nIgqiA~L~A~~~~ik~Iv 302 (398)
T PLN02920 230 MLVGDIYGGMDYSK-----IG--LSSTTIASSFGKAISDNKELEDYKPEDVARSLLRMISNNIGQISYLNALRFGLKRIF 302 (398)
T ss_pred ceeccccCCCCCCC-----CC--CCccceeeccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 2344455421 111 00 11111111122 110 0011247999999999999999887654332235689999
Q ss_pred EecCCcchh-hHHHHHHHHhC------C-ceEEecCCCchhHHHHHHHH
Q 008692 452 ATGGASANQ-TILSCLASIYG------C-DIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 452 ~~GGga~s~-~w~Qi~Advlg------~-pv~~~~~~e~~alGAA~lA~ 492 (557)
..|...+++ ..++.++-..+ + ++..-.....+|+||++...
T Consensus 303 f~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 303 FGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred EEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 999999887 66665655542 2 33343455589999987543
No 63
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.69 E-value=0.028 Score=64.07 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE-ecCCCchhHHHHHHHHhc
Q 008692 424 RALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 424 rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
.-+++-+.-.++..++.-.. ...++.|+++||.+|.|...+++.+.||.++.. .+..|+.|+|||+.|+.-
T Consensus 342 ~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~l 414 (673)
T PLN03184 342 SDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVL 414 (673)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHh
Confidence 33344433334444433221 246799999999999999999999999987654 457789999999999875
No 64
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.65 E-value=0.022 Score=64.87 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE-ecCCCchhHHHHHHHHhc
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
++++.-+++-+.-.++..++.... ...++.|+++||.++.|...+++.+.||.++.. .+..++.|+|||+.|+.-
T Consensus 340 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 340 EELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhh
Confidence 344444555555455555554332 246799999999999999999999999987654 346679999999999875
No 65
>PRK13321 pantothenate kinase; Reviewed
Probab=95.63 E-value=0.023 Score=56.81 Aligned_cols=66 Identities=26% Similarity=0.226 Sum_probs=47.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~ 492 (557)
|...+-..++.|.+..+...++.+++ +.+ -.|+++||.++ +++..+..+..+ .++-...|-..++.
T Consensus 185 T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~-~~vi~TGG~a~------~l~~~~~~~~~~--~~~Lvl~GL~~~~~ 252 (256)
T PRK13321 185 TVSSIQSGLYYGYAGLVEGIVARIKAELGGP-PRVIATGGFAS------LIAKESRCFDHV--DPDLLLEGLRILYQ 252 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCcHH------HHhhcCCCccEE--CCCcHHHHHHHHHH
Confidence 78888888999999999888888764 323 47999999754 355555555444 45667778877764
No 66
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=95.57 E-value=0.022 Score=53.61 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=57.4
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCCCC
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLSK 90 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~~ 90 (557)
||||+|.|.+-++++|.++.+++..+.+.. |. +....+.++++++... .++.+
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt---------------~~----------d~~~gi~~al~~l~~~~~~~~~~ 56 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT---------------PD----------DPAEGILEALDALLEESGIDPSD 56 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC---------------Cc----------CHHHHHHHHHHhhhcccCCChhh
Confidence 799999999999999999888887766542 22 4666777777776654 45788
Q ss_pred eeEEEEeccccceEEEcCCCccc
Q 008692 91 VTAVSGSGQQHGSVYWKKGSATI 113 (557)
Q Consensus 91 I~aIgis~~~~~~v~vD~~g~pl 113 (557)
|..|.+++...+=.++-.+|.++
T Consensus 57 i~~v~~gTT~~tNAl~e~~g~~v 79 (176)
T PF05378_consen 57 IDRVRHGTTVATNALLERKGARV 79 (176)
T ss_pred CcEEEeccHHHHHHHHhccCCCc
Confidence 99999988876666666666543
No 67
>PRK12408 glucokinase; Provisional
Probab=95.54 E-value=0.012 Score=61.37 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCE-EEEecCCcch--hhHHH---HHH--------HHh-CCceEEecCCCchhHH
Q 008692 422 EVRALVEGQFLSMRGHAERFGLPSPPRR-IIATGGASAN--QTILS---CLA--------SIY-GCDIYTVQRPDSASLG 486 (557)
Q Consensus 422 l~rAvlEgia~~~r~~~~~l~~~~~~~~-i~~~GGga~s--~~w~Q---i~A--------dvl-g~pv~~~~~~e~~alG 486 (557)
+++-..+.++..+..+...+ .++. |++.||.+.+ +.+.. +.+ ..+ +.||......+++.+|
T Consensus 251 ~~~~~~~~La~~i~nl~~~l----dPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~G 326 (336)
T PRK12408 251 ALQVFCGFLGSVVGDMALAY----GARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLG 326 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHH----CCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHH
Confidence 44555555555555555554 3566 9999988743 54433 111 122 5688888766889999
Q ss_pred HHHHHH
Q 008692 487 AALRAA 492 (557)
Q Consensus 487 AA~lA~ 492 (557)
||.++.
T Consensus 327 Aa~~~~ 332 (336)
T PRK12408 327 AASWYL 332 (336)
T ss_pred HHHHHH
Confidence 986653
No 68
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=95.46 E-value=0.039 Score=55.51 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcch-hhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhc
Q 008692 423 VRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s-~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a 494 (557)
..-+++-.+..+...++.+.......++.+.||.+++ +.|.-++=.-+..|. ...+..||.++|...
T Consensus 225 A~~Il~~aa~~i~~~~~~l~~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A~~~ 292 (301)
T COG2971 225 AIRILKEAAAYIATLLEALSIFNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHHHHh
Confidence 4567777788888888888432456789999999977 888887777666655 234678999988665
No 69
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.42 E-value=0.031 Score=63.56 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhC-Cce-EEecCCCchhHHHHHHHHhc
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYG-CDI-YTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg-~pv-~~~~~~e~~alGAA~lA~~a 494 (557)
+.+++-+++.+.-.+...++.... ...++.|.++||.+|.|...+++.+.|+ .++ ...+..|+.|+|||+.|+.-
T Consensus 305 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~l 382 (653)
T PTZ00009 305 EELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL 382 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHh
Confidence 344444555555555555554332 2468999999999999999999999996 455 45567789999999999864
No 70
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=95.31 E-value=0.11 Score=54.49 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCC-ceEEecC-----CCchhHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC-DIYTVQR-----PDSASLGAALRA 491 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~-pv~~~~~-----~e~~alGAA~lA 491 (557)
+++|+++-+.|=.|.++.+.++.+.. ++++|+++|||++|+.+++.+...++. +|...+. .---|+.=|++|
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~~--~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFPP--QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-T--T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCC--CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 48999999999999999998888753 478999999999999999999998875 8876542 123467777777
Q ss_pred HhccccccCCCCCCHHHH
Q 008692 492 AHGYLCSKKGSFVPISNM 509 (557)
Q Consensus 492 ~~a~~~~~~G~~~~~~~a 509 (557)
...+ .|.-.++...
T Consensus 336 ~~~~----~g~~~~lp~v 349 (364)
T PF03702_consen 336 YRRL----NGLPNNLPSV 349 (364)
T ss_dssp HHHH----CT---S-HHH
T ss_pred HHHH----cCCCCCCCcc
Confidence 7664 4444444443
No 71
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.09 E-value=0.044 Score=62.32 Aligned_cols=75 Identities=24% Similarity=0.369 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhC-CceEE-ecCCCchhHHHHHHHHhc
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYG-CDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg-~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
++++.-+++-+.-.++..++.-.. ...++.|+++||.+|.|...+++.+.|+ .++.. .+..++.|+|||+.|+.-
T Consensus 300 e~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l 377 (653)
T PRK13411 300 EELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL 377 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhh
Confidence 334444444444444444443321 2347899999999999999999999997 55543 456789999999999865
No 72
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=95.08 E-value=0.052 Score=56.42 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC--CC-CCC-EEEEecCCcchhhHHHHHHHHhCCceEEec-CCCchhHHHHHHHHh
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGL--PS-PPR-RIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 493 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~--~~-~~~-~i~~~GGga~s~~w~Qi~Advlg~pv~~~~-~~e~~alGAA~lA~~ 493 (557)
.+++...++++.-.++..++.... .. .++ .|+++||+|+.+.+.+.+.+.++.||.+.. ..++.|+|||+.+..
T Consensus 246 ~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 246 REALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 455666667777777777765532 11 123 599999999999999999999999999876 445889999999765
No 73
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=94.88 E-value=0.096 Score=54.87 Aligned_cols=75 Identities=23% Similarity=0.312 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecC--CCc---hhHHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR--PDS---ASLGAALRAA 492 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~--~e~---~alGAA~lA~ 492 (557)
+++|+++-+.|=.|.++.+.+..+. .++++|+++|||++|+.+++.+...+..+|...+. -.. -|+.-|++|.
T Consensus 260 s~~D~~aTlt~~TA~sI~~~~~~~~--~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 260 SPEDVQATLTELTAASIARAVRRLP--PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc--CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHH
Confidence 7899999999999999888887654 23578999999999999999999999766665543 122 3455555555
Q ss_pred hc
Q 008692 493 HG 494 (557)
Q Consensus 493 ~a 494 (557)
..
T Consensus 338 ~~ 339 (365)
T PRK09585 338 RT 339 (365)
T ss_pred HH
Confidence 54
No 74
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=94.84 E-value=0.022 Score=64.71 Aligned_cols=105 Identities=11% Similarity=-0.001 Sum_probs=57.7
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLS 89 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 89 (557)
..+||||||.|++|.+++|.+|+++...+.+.+ +.+ .+.+.+.+.+++. ...
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~--------------~~~----------~~~~~i~~~l~~~----~~~ 69 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGEITQIRVYPGA--------------DYP----------TLTDAIRKYLKDV----KIG 69 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCcccceeEEecC--------------CCC----------CHHHHHHHHHHhc----CCC
Confidence 358999999999999999999988766443321 012 3444444443322 123
Q ss_pred CeeEEEEeccccceEEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHH
Q 008692 90 KVTAVSGSGQQHGSVYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQC 148 (557)
Q Consensus 90 ~I~aIgis~~~~~~v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~ 148 (557)
+|.+|||+.-+ ++|.+. ....+++-..++ +.|...|++.|+.+=+|-++....
T Consensus 70 ~~~~igig~pG----pVd~~~-~~~~nl~w~~~~-~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 70 RVNHAAIAIAN----PVDGDQ-VRMTNHDWSFSI-EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred CcceEEEEEec----CccCCe-eeecCCCcEecH-HHHHHHcCCCeEEEEchHHHHHcC
Confidence 57788877766 555431 111111111133 445555554344556666655544
No 75
>PRK11678 putative chaperone; Provisional
Probab=94.82 E-value=0.12 Score=56.10 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhC-CceEEecCCCchhHHHHHHHHh
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG-CDIYTVQRPDSASLGAALRAAH 493 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg-~pv~~~~~~e~~alGAA~lA~~ 493 (557)
-+++++..++-+.-.++..++.. +..++.|+++||.++.|...+++.+.|+ .|+...+..++.|.|+|+.|..
T Consensus 374 fe~ii~~~l~ri~~~i~~~L~~a--~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 374 LEEAISQPLARILELVQLALDQA--QVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHh
Confidence 34444455555544444444433 4557899999999999999999999996 5888888888999999998754
No 76
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=94.71 E-value=0.07 Score=55.47 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC--CCC-C-CEEEEecCCcchhhHHHHHHHHhCCceEEec-CCCchhHHHHHHHHh
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL--PSP-P-RRIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 493 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~--~~~-~-~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~-~~e~~alGAA~lA~~ 493 (557)
-.+++...++++.-.++..++.... ... . +.|+++||+|+-|.+.+.+++.|+.||.+.. ..++.|+|||+++..
T Consensus 248 ~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 248 VREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 3445555566666666666665432 112 2 3699999999999999999999999999876 556889999998644
No 77
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.70 E-value=0.17 Score=47.93 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=46.3
Q ss_pred EEEEEccCCceEEEEEcC--CC--CEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCC
Q 008692 12 FLGFDSSTQSLKATVLDS--NL--NIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLD 87 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~--~G--~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~ 87 (557)
++||||||+++|+++... +| ++++.... |..|...+.-.|.+ ..-+++.++++++.+..
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~------~s~gi~~G~I~d~~----------~~~~~I~~ai~~ae~~~- 63 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEV------PSRGIRKGVIVDIE----------AAARAIREAVEEAERMA- 63 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEe------cCCCccCcEEECHH----------HHHHHHHHHHHHHHHHh-
Confidence 479999999999999874 45 34444433 23344445677887 88888888888876541
Q ss_pred CCCe--eEEEEecc
Q 008692 88 LSKV--TAVSGSGQ 99 (557)
Q Consensus 88 ~~~I--~aIgis~~ 99 (557)
..+| ..+++++.
T Consensus 64 ~~~i~~V~v~i~g~ 77 (187)
T smart00842 64 GVKIDSVYVGISGR 77 (187)
T ss_pred CCcccEEEEEEcCC
Confidence 2233 33555554
No 78
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=94.57 E-value=0.063 Score=55.78 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCC---CCCCE-EEEecCCcchhhHHHHHHHHhCCceEEec-CCCchhHHHHHHHHh
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGLP---SPPRR-IIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRAAH 493 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~~---~~~~~-i~~~GGga~s~~w~Qi~Advlg~pv~~~~-~~e~~alGAA~lA~~ 493 (557)
.+++...++.+.-.++..++..... ..+++ |+++||+++.+.+.+.+++.++.|+.+.. ..++.++|||+++..
T Consensus 250 ~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 250 REALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 4455555666666666666654311 12344 99999999999999999999999999876 445789999999765
No 79
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.33 E-value=0.031 Score=59.38 Aligned_cols=85 Identities=11% Similarity=0.126 Sum_probs=48.5
Q ss_pred EEEEEEccCCceEEEEEcC-CCCEEEEEeeeccCCCC-CCCCC--CceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc-
Q 008692 11 LFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSELP-HYKTK--DGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS- 85 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~~p-~~g~~--~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~- 85 (557)
|=++||||||.+.+.++|. +|++++..+..+|.... .+--. ..+. +|+ -.+..-..+.+.+..+++++.++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~-~~~---~~~~L~~~i~~~i~~li~~l~~~~ 77 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYAL-SPE---GLEELQRLIRETINELIEELLEKA 77 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH--TT---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhc-CCc---hHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6689999999999999996 69999999988875311 10000 0011 232 12222224455566666665543
Q ss_pred -CCCCCeeEEEEecc
Q 008692 86 -LDLSKVTAVSGSGQ 99 (557)
Q Consensus 86 -~~~~~I~aIgis~~ 99 (557)
+++++|..|.|++.
T Consensus 78 gi~~~~I~~i~i~GN 92 (412)
T PF14574_consen 78 GISPEDIYEIVIVGN 92 (412)
T ss_dssp T--GGGEEEEEEEE-
T ss_pred CCCHHHeEEEEEEec
Confidence 67889999988773
No 80
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=94.27 E-value=0.21 Score=50.26 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCcEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHh
Q 008692 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (557)
Q Consensus 8 ~~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~ 83 (557)
+.++++||||||+++|+++++.+++++.....+-. +-..+.-.|.+ .-..++.++++.+.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~------~vr~G~i~di~----------~a~~~i~~~~~~ae 81 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWAD------VVRDGIVVDFI----------GAVTIVRRLKATLE 81 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEecccc------ccCCCEEeeHH----------HHHHHHHHHHHHHH
Confidence 45799999999999999999988876555543322 11123556665 66666666665543
No 81
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=94.06 E-value=0.088 Score=54.85 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCC---CCCCC-EEEEecCCcchhhHHHHHHHHhCCceEEec-CCCchhHHHHHHH
Q 008692 423 VRALVEGQFLSMRGHAERFGL---PSPPR-RIIATGGASANQTILSCLASIYGCDIYTVQ-RPDSASLGAALRA 491 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~---~~~~~-~i~~~GGga~s~~w~Qi~Advlg~pv~~~~-~~e~~alGAA~lA 491 (557)
+...++.+.-.++..++.... ...++ .|+++||+|+-+.+.+.+++.++.||.+.. ..++.++||++.-
T Consensus 251 i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 251 MRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 345555555556666655431 12355 599999999999999999999999999874 4457889999873
No 82
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.11 Score=57.49 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEe-cCCCchhHHHHHHHHhc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTV-QRPDSASLGAALRAAHG 494 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~-~~~e~~alGAA~lA~~a 494 (557)
-+++..-+++=+-.-+...+..... +..+..|=++||++|.|...+++++.||++..++ ...|+.|+|||+.++.-
T Consensus 305 fEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIl 382 (727)
T KOG0103|consen 305 FEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAIL 382 (727)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhc
Confidence 4555666677666666666665432 4577899999999999999999999999999864 57789999999998864
No 83
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.36 Score=49.86 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh-CCceEEecCC--CchhHHHHHHHHhc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY-GCDIYTVQRP--DSASLGAALRAAHG 494 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pv~~~~~~--e~~alGAA~lA~~a 494 (557)
+++|+.+...|-.+-++-..+..+. ...++++++|||++|+++|+-+|..+ |.+|...+.. .+-.+.|...|..+
T Consensus 264 ~a~Dv~aTL~eltA~tIv~s~~~~~--~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA 341 (371)
T COG2377 264 NAEDVQATLVELTAATIVKSVATLQ--GDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLA 341 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcc--CCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHH
Confidence 6899999999988877766666333 46799999999999999999999999 5555543322 12334444444433
No 84
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=92.64 E-value=0.3 Score=51.01 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC---CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecC
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGL---PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR 479 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~---~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~ 479 (557)
..+++.+++-++-.++..++.... +.+++.|+++||+++.+-+...++..||.||++.+.
T Consensus 253 ~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P 315 (348)
T TIGR01175 253 PEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANP 315 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecCh
Confidence 456788999999888888876542 457899999999999999999999999999998653
No 85
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=92.48 E-value=0.21 Score=52.20 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcC--C-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEec
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFG--L-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQ 478 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~--~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~ 478 (557)
..+.++..++-++-+++..++-.. . +.++++|+++|||++.+-+.+.+++.||.||++.+
T Consensus 244 ~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 244 DQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 456788889999999999998543 2 57899999999999999999999999999999875
No 86
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=92.24 E-value=1.2 Score=46.39 Aligned_cols=167 Identities=12% Similarity=0.038 Sum_probs=90.9
Q ss_pred cEEEEecccceeccccCCCCCCCcceeecCccCCCcEEEEEEeechhhHHHHHHHHh-cCchHHHHHHHHhcCCCCCCCe
Q 008692 297 DLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGGK 375 (557)
Q Consensus 297 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~-~~~~~~~l~~~a~~~~~g~~gl 375 (557)
-+.+++||+..+..+. .++.|-..+.+.-||..+-=+..++ +..+|+++.++|++=....-.
T Consensus 158 yllvniGsGvSi~~v~----------------~~~~~~rvgGs~iGGgT~~GL~~llt~~~~~~e~~~la~~G~~~~vD- 220 (341)
T PF03630_consen 158 YLLVNIGSGVSILKVE----------------GPNQFERVGGSSIGGGTFWGLCSLLTGCKSFDEILELAKKGDNSNVD- 220 (341)
T ss_dssp EEEEEESSSEEEEEEE----------------ETTEEEEEEEES-SHHHHHHHHHHHH---SHHHHHHHHHH--GGGTS-
T ss_pred EEEEEcCCceEEEEEe----------------CCCceEEEeccccchHhHHHHHHHhcCCCCHHHHHHHhcCCCccccC-
Confidence 4678999875543221 1345566666666777665455554 447899999998752211111
Q ss_pred EeEeccCCCCC-----CCC-CCceeeeeecccccccccccccccccCCChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCE
Q 008692 376 MGFYYKEHEIL-----PPL-PVGFHRYILENFEGETLDGVNEVEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRR 449 (557)
Q Consensus 376 ~~lP~l~Ger~-----P~~-~~g~~~~~~~~~~~g~~~Gl~~~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~ 449 (557)
+.+-.+.|... |.. ....||- ... . .....+.+++|++|+++--|++++-++.-...+...+++
T Consensus 221 llV~DIyg~~y~~~~L~~~~~AssFGk-~~~--------~-~~~~~~~~~~Dia~sll~mv~~nIg~la~l~A~~~~~~~ 290 (341)
T PF03630_consen 221 LLVGDIYGGDYNKIGLPGDLTASSFGK-VQS--------K-AKRKDSFSKEDIAKSLLNMVSNNIGQLAYLHAKIHGVKR 290 (341)
T ss_dssp EEHHHHHSS-BGGGTB-TTSEEETTCC-GGS--------H-HHH-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHT--E
T ss_pred ceeeeccCCCcccCCCCHHHHHhhhhh-hhh--------c-ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 22334444431 111 1112210 000 0 000012479999999999999998876543322235789
Q ss_pred EEEecCCcch-hhHHHHHH---HHhC---CceEEec-CCCchhHHHHHH
Q 008692 450 IIATGGASAN-QTILSCLA---SIYG---CDIYTVQ-RPDSASLGAALR 490 (557)
Q Consensus 450 i~~~GGga~s-~~w~Qi~A---dvlg---~pv~~~~-~~e~~alGAA~l 490 (557)
|+++|...++ +..+..++ +-+. .....++ ....+|+||.+.
T Consensus 291 I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 291 IVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp EEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred EEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 9999999864 67788888 4442 3333444 555899999874
No 87
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.5 Score=52.91 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=44.9
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE-ecCCCchhHHHHHHHHhc
Q 008692 444 PSPPRRIIATGGASANQTILSCLASIYGCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 444 ~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
..+++.|.++||.+|.|...+.+++.++.+... ....|+.|+|||+.|+.-
T Consensus 307 ~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l 358 (579)
T COG0443 307 KSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVL 358 (579)
T ss_pred hhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhh
Confidence 357899999999999999999999999976554 567789999999999986
No 88
>PRK09604 UGMP family protein; Validated
Probab=91.12 E-value=0.44 Score=49.55 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh---CCceEEecC----CCchhHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQR----PDSASLGAALR 490 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pv~~~~~----~e~~alGAA~l 490 (557)
++.++.+++.+.++-.+.+.++...+...+++|.++||.+.|..+++.+.+.+ |.++.+++. +.+.++|+|-+
T Consensus 226 ~~~~iA~s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 226 TKADIAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 46788888888888777777765543245789999999999999999999998 778877653 23445555544
Q ss_pred HHhc
Q 008692 491 AAHG 494 (557)
Q Consensus 491 A~~a 494 (557)
-..-
T Consensus 306 ~~~~ 309 (332)
T PRK09604 306 ERLK 309 (332)
T ss_pred HHHH
Confidence 4444
No 89
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=0.52 Score=49.03 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=44.1
Q ss_pred CCCCCEEEEecCCcchhhHHHHHHHHhC-C-ceEEecCCCchhHHHHHHHHhc
Q 008692 444 PSPPRRIIATGGASANQTILSCLASIYG-C-DIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 444 ~~~~~~i~~~GGga~s~~w~Qi~Advlg-~-pv~~~~~~e~~alGAA~lA~~a 494 (557)
...+++|+++||.+|-|-..|++-|.|+ + |-.=....|+.|+|||..|++-
T Consensus 360 KsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvl 412 (663)
T KOG0100|consen 360 KSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVL 412 (663)
T ss_pred cccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccc
Confidence 3688999999999999999999999994 4 4444567789999999999986
No 90
>PF13941 MutL: MutL protein
Probab=90.77 E-value=0.83 Score=49.28 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=46.5
Q ss_pred EEEEEccCCceEEEEEc---CCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcC--
Q 008692 12 FLGFDSSTQSLKATVLD---SNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSL-- 86 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d---~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~-- 86 (557)
+|.+|+|+|-+|+.+|| .+.++++.++.+.. ++ |. ++...+.++++++.+..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-----------v~--~~----------Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-----------VE--PG----------DVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-----------cC--cc----------cHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999 45788888876654 21 23 67788888888887652
Q ss_pred C--CCCeeEEEEeccccc
Q 008692 87 D--LSKVTAVSGSGQQHG 102 (557)
Q Consensus 87 ~--~~~I~aIgis~~~~~ 102 (557)
. .+...-++.||-..+
T Consensus 59 ~~~~~~~~~la~SSAaGG 76 (457)
T PF13941_consen 59 SPDDGYDKVLACSSAAGG 76 (457)
T ss_pred CcccCceEEEEECCCCCc
Confidence 1 122344555555444
No 91
>PRK14878 UGMP family protein; Provisional
Probab=90.48 E-value=0.64 Score=48.17 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=55.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh---CCceEEecCCCchhHHHHHHHHhc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pv~~~~~~e~~alGAA~lA~~a 494 (557)
++.++.+++.+.++-.+-...+...+...+++|.++||.+.|..+++.+.+.+ |.+|.+++..-++- |++|+|..+
T Consensus 213 ~~~diAa~fq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D-~GimIA~~g 291 (323)
T PRK14878 213 RLEDVCYSLRETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGD-NGAMIAYTG 291 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCch-HHHHHHHHH
Confidence 36788888888888777777665543234679999999999999999999988 88888876433333 334445433
No 92
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=90.37 E-value=0.85 Score=45.09 Aligned_cols=53 Identities=26% Similarity=0.240 Sum_probs=35.4
Q ss_pred EEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHH
Q 008692 14 GFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKL 82 (557)
Q Consensus 14 gIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l 82 (557)
||||||+++|+++.+.+++.++....+-. +-.+++-.|.+ .-...+..+++..
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~~~~------~~~~g~I~d~~----------~~~~~l~~l~~~a 53 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQFAD------VVRDGIVVDFL----------GAVEIVRRLKDTL 53 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEecccc------cccCCeEEEhH----------HHHHHHHHHHHHH
Confidence 79999999999999998875555433321 11235677777 6666666666544
No 93
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=90.23 E-value=1.2 Score=44.77 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=42.7
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCcee-eCCCCCCCccCChhHHHHHHHHHHHHHhhc--CCCC
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVY-RDPSNNGRIVSPTLMWIEALDLMLQKLSKS--LDLS 89 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~e-qd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~ 89 (557)
||||.|+|++|++|+|.+|+++.+....-.. .+ .+.+ ...+.+.++++++.+. ....
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n----------~~~~~~~----------~~~~~i~~~i~~~~~~~~~~~~ 60 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN----------YNSVGFE----------EAMENIKEAIEEALSQAGLSPD 60 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TT----------HHHHHHH----------HHHHHHHHHHHHHHHHHTTSTT
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCC----------CCCCCcc----------hhhhHHHHHHHHHHHHcCCCcc
Confidence 7999999999999999999988776543210 11 2333 6777777777776654 4445
Q ss_pred CeeEE
Q 008692 90 KVTAV 94 (557)
Q Consensus 90 ~I~aI 94 (557)
+|..+
T Consensus 61 ~i~~~ 65 (271)
T PF01869_consen 61 DIAAI 65 (271)
T ss_dssp CCCEE
T ss_pred cccee
Confidence 56655
No 94
>PLN02902 pantothenate kinase
Probab=90.04 E-value=5.9 Score=45.80 Aligned_cols=172 Identities=12% Similarity=-0.002 Sum_probs=97.5
Q ss_pred cEEEEecccceeccccCCCCCCCcceeecCccCCCcEEEEEEeechhhHHHHHHHHh-cCchHHHHHHHHhcCCCCCCCe
Q 008692 297 DLAISLGTSDTVFGITDDPEPRLEGHVFPNPVDTKGYMIMLVYKNASLTREDVRNRC-AEKSWDVFNKYLQQTPPLNGGK 375 (557)
Q Consensus 297 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~G~~~~W~~~~~-~~~~~~~l~~~a~~~~~g~~gl 375 (557)
.+++++||+..+.-+.. ++.|-..+++.-||..+-=+..++ +..+|++|.++|.+=.+-.-.
T Consensus 216 yLLVNIGSGVSilkV~~----------------~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vD- 278 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG----------------DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAID- 278 (876)
T ss_pred eEEEEcCCceEEEEEec----------------CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccC-
Confidence 47889999865433221 334555555555666654455554 347899999998752221111
Q ss_pred EeEeccCCC-CCCCCCCceeeeeecccccccccc--ccc-ccccCCChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Q 008692 376 MGFYYKEHE-ILPPLPVGFHRYILENFEGETLDG--VNE-VEVKEFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRII 451 (557)
Q Consensus 376 ~~lP~l~Ge-r~P~~~~g~~~~~~~~~~~g~~~G--l~~-~~~~~~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~ 451 (557)
+.+-.+.|. ..|. ++ +..++-++-+| ... ....+.+++|++|+++--|++++-++.-...+...+++|+
T Consensus 279 llVgDIYGg~~y~~-----~G--L~~d~iASSFGKv~~~~~~~~~~s~eDiarSLL~mIs~NIGqiA~L~A~~~~ikrIv 351 (876)
T PLN02902 279 MLVGDIYGGMDYSK-----IG--LSASTIASSFGKVISENKELSDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIF 351 (876)
T ss_pred eeeccccCCCCcCC-----CC--CCcchhhhccCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 234555553 2121 00 11111111122 000 0011247999999999999999987654333235689999
Q ss_pred EecCCcch-hhHHHHHHHHhC------CceEEec-CCCchhHHHHHHHH
Q 008692 452 ATGGASAN-QTILSCLASIYG------CDIYTVQ-RPDSASLGAALRAA 492 (557)
Q Consensus 452 ~~GGga~s-~~w~Qi~Advlg------~pv~~~~-~~e~~alGAA~lA~ 492 (557)
.+|...++ +.-|+.++-.++ +....++ ....+|+||.+-..
T Consensus 352 F~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 352 FGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred EecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCC
Confidence 99999754 566777775543 2333333 45589999986543
No 95
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=90.01 E-value=0.82 Score=47.91 Aligned_cols=58 Identities=9% Similarity=0.183 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhC--CceEEecC
Q 008692 422 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG--CDIYTVQR 479 (557)
Q Consensus 422 l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg--~pv~~~~~ 479 (557)
.++.+++-.++.+...+-.+.. +..++.|+++||.+.++.++..+.+-+. .||.+...
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg 328 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPG 328 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCC
Confidence 4555666666666655554432 2257899999999987776666665554 58888764
No 96
>PRK13317 pantothenate kinase; Provisional
Probab=89.98 E-value=0.36 Score=48.88 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=23.5
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEE
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVAS 36 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~ 36 (557)
.+.+|||+|+|.+|.+++|++++++..
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~~~~~~ 28 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKKQRTFK 28 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCCeEEEE
Confidence 478999999999999999998877643
No 97
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=89.64 E-value=0.5 Score=48.93 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCC--CEEEEecCCcchhhHHHHHHHHhCCceEEecCCC-chhHHHHHHH
Q 008692 424 RALVEGQFLSMRGHAERFGL--PSPP--RRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRA 491 (557)
Q Consensus 424 rAvlEgia~~~r~~~~~l~~--~~~~--~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e-~~alGAA~lA 491 (557)
+-.++.|.-.++.+++.+.. -..+ +-|+++||+|+-+-+-+.+++-++.||.+.+.++ +.+.|+..+.
T Consensus 247 ~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 247 EPPVDQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 33444555555555554321 0111 3499999999999999999999999999998665 7788987754
No 98
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=89.57 E-value=0.5 Score=54.11 Aligned_cols=75 Identities=21% Similarity=0.191 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhC---CceEEec----CCCchhHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG---CDIYTVQ----RPDSASLGAALR 490 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg---~pv~~~~----~~e~~alGAA~l 490 (557)
+++++.+++.+.++-.+...++.+.....+++|.++||.++|..+++.+.+.++ ..|..++ ...+.++|.|+.
T Consensus 630 ~~~~IAa~fh~tla~~L~~~a~~~~~~~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~ 709 (711)
T TIGR00143 630 DRSKIAHIAHKFVASGLVEIATAIAVPFGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVA 709 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHH
Confidence 578888999998888777777765432356889999999999999999988875 6776543 345778888877
Q ss_pred HH
Q 008692 491 AA 492 (557)
Q Consensus 491 A~ 492 (557)
|+
T Consensus 710 a~ 711 (711)
T TIGR00143 710 AA 711 (711)
T ss_pred hC
Confidence 63
No 99
>PTZ00288 glucokinase 1; Provisional
Probab=88.35 E-value=1.9 Score=46.02 Aligned_cols=70 Identities=23% Similarity=0.258 Sum_probs=45.5
Q ss_pred CcEEEEEEccCCceEEEEEcC---CCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc
Q 008692 9 DSLFLGFDSSTQSLKATVLDS---NLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (557)
Q Consensus 9 ~~~~lgIDiGTts~Ka~l~d~---~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 85 (557)
.+|+||+|||.|++|..+++. ++..+...+.+++. .-.|-. +..+.+.+.++.+.+.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~----------~~~~~~~~~~~~l~~~ 84 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV----------TKTDIR----------ELLEFFDEVLQKLKKN 84 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc----------ccccHH----------HHHHHHHHHHHHHHhc
Confidence 368999999999999999986 33444455555541 012333 6788888888888764
Q ss_pred -C--CCCCeeEEEEec
Q 008692 86 -L--DLSKVTAVSGSG 98 (557)
Q Consensus 86 -~--~~~~I~aIgis~ 98 (557)
. ....-.+|+|.|
T Consensus 85 ~~~~~~~~~a~iAvAG 100 (405)
T PTZ00288 85 LSFIQRVAAGAISVPG 100 (405)
T ss_pred CccccCcCeEEEEEeC
Confidence 1 222334566655
No 100
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=88.16 E-value=0.88 Score=43.92 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=46.4
Q ss_pred cEEEEEEccCCceEEEEEcCCCC-EEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc--C
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLN-IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--L 86 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~-~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~ 86 (557)
..+|+||+|.|+.|++++...|. .+...+..|++ |..- .+...+ ++++-+.+++..+.+. .
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p~~~----~~~~~~----------~lFd~ia~~i~~f~~~~~~ 126 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--PEEL----MNGSGE----------ELFDFIADCIAEFLKEHNL 126 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----HHH----HTSBHH----------HHHHHHHHHHHHHHHHTTT
T ss_pred ceEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--ChHH----hcCCcc----------cHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999998765 44444444542 3220 111223 8999999988887654 2
Q ss_pred -CCCCeeEEEEec
Q 008692 87 -DLSKVTAVSGSG 98 (557)
Q Consensus 87 -~~~~I~aIgis~ 98 (557)
+..+.--+|+|-
T Consensus 127 ~~~~~~l~lGfTF 139 (206)
T PF00349_consen 127 ESRDEKLPLGFTF 139 (206)
T ss_dssp TSTTSEEEEEEEE
T ss_pred cccccccceEEEE
Confidence 244555566653
No 101
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=87.85 E-value=1.6 Score=44.95 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=20.9
Q ss_pred EEEEccCCceEEEEEcCCCCEEEE
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVAS 36 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~ 36 (557)
|.+|||.|++|..++|.+|+++.+
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 579999999999999998876654
No 102
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=87.74 E-value=1.1 Score=42.44 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCC-CchhHHHHHHHH
Q 008692 423 VRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRP-DSASLGAALRAA 492 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~-e~~alGAA~lA~ 492 (557)
++-|+|=+|--.+..++ +.+++.+.+.||.+.-+-.-.++-.-|+++|..+..+ ..+.||.|+..+
T Consensus 207 v~PV~eKMAeIv~~hie----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg~ 273 (277)
T COG4820 207 VKPVYEKMAEIVARHIE----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSGR 273 (277)
T ss_pred hhHHHHHHHHHHHHHhc----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhccc
Confidence 45677777766666555 4678999999999988899999999999999998754 488899887543
No 103
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.54 E-value=1.3 Score=49.28 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEE--ecCCCchhHHHHHHHHhc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYT--VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~--~~~~e~~alGAA~lA~~a 494 (557)
-.++.|..+|-+.= .++.... ...+..|+++||.++-|...+++.|.|+-.-.. ....|+.|+|||+.|+.-
T Consensus 310 ~~dlf~~~~~~v~~----~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 310 NADLFRSTLEPVEK----ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hhHHHHHHHHHHHH----HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhc
Confidence 35566777766662 3332222 457899999999999999999999999863222 235689999999999986
No 104
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.35 E-value=1.3 Score=45.32 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC---CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecC
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL---PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR 479 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~---~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~ 479 (557)
..+.++-+++.+.-.+++.++-+-. ...++.|.++||+++-.-+-+.+.+-++.|+++.+.
T Consensus 257 ~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 257 GSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 5677899999999999999996542 368999999999999999999999999999999764
No 105
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.30 E-value=1.6 Score=44.09 Aligned_cols=66 Identities=14% Similarity=0.265 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecC--Ccchh-hHHHHHHHHhCCceEEecCCCchhHHHHHHHH
Q 008692 423 VRALVEGQFLSMRGHAERFGLPSPPRRIIATGG--ASANQ-TILSCLASIYGCDIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GG--ga~s~-~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~ 492 (557)
++++.|+++.++...+-. . .+..+|+++|- .++.+ .+...+.+.|+.+|.+... +.+|.|+|++|.
T Consensus 242 ~dal~~~vameIasLl~l-~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~ 310 (326)
T TIGR03281 242 LDSLAMSVAMEIASLGLL-D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAE 310 (326)
T ss_pred HHHHHHHHHHHHHhheec-c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHH
Confidence 478888888887765543 1 23458999997 67888 9999999999999999876 779999999985
No 106
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=86.93 E-value=3.2 Score=41.64 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCC-CC--CCCEEEEecCCcch-hhHHHHHHHHhCC-----ceEEecCCCchhHHHHHH
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGL-PS--PPRRIIATGGASAN-QTILSCLASIYGC-----DIYTVQRPDSASLGAALR 490 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~-~~--~~~~i~~~GGga~s-~~w~Qi~Advlg~-----pv~~~~~~e~~alGAA~l 490 (557)
+.+.|=.=|-++-.++..+..+.. .+ ..=.|+.+||.-+| +.|++=+=+-+-. .++.....+.+|+|||++
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~l 313 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAIL 313 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHH
Confidence 344454556666666777776652 21 34579999999755 6666544333222 366667788899999999
Q ss_pred HHhc
Q 008692 491 AAHG 494 (557)
Q Consensus 491 A~~a 494 (557)
|+.-
T Consensus 314 aa~~ 317 (336)
T KOG1794|consen 314 AASL 317 (336)
T ss_pred hhhh
Confidence 9876
No 107
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=86.68 E-value=1.8 Score=44.76 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=49.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh---CCceEEecC
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQR 479 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pv~~~~~ 479 (557)
++.++.+++.+.++-.+.+.++...+...+++|.++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 46788888888888888777776543245688999999999999999999998 788887653
No 108
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=86.65 E-value=1 Score=46.42 Aligned_cols=66 Identities=26% Similarity=0.236 Sum_probs=43.6
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCee
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I~ 92 (557)
||+|||.-++|++++|.+|++......+.|+ | |+++ .+-+++.++++.+ +..+..
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl------W-----~~~~----------~L~~~l~~~~~~~----~~~~~~ 55 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL------W-----KGND----------KLAETLKEISQDL----SSADNV 55 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc------c-----CCch----------HHHHHHHHHHHhc----CccceE
Confidence 6999999999999999999888766655543 3 3444 5655555555433 222456
Q ss_pred EEEEeccccce
Q 008692 93 AVSGSGQQHGS 103 (557)
Q Consensus 93 aIgis~~~~~~ 103 (557)
+|-.|+-...+
T Consensus 56 avtMTgELaD~ 66 (318)
T TIGR03123 56 AVTMTGELADC 66 (318)
T ss_pred EEEeehhhhhh
Confidence 66666654433
No 109
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=86.48 E-value=1.5 Score=45.62 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=55.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh---CCceEEecCCCchhHHHHHHHHhc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pv~~~~~~e~~alGAA~lA~~a 494 (557)
.+.++.+++.|.++-.+...++..-+...+++|+++||.|.|..+++.+.+.+ |.++..++..- +.==|||+|..|
T Consensus 235 ~~~diaasfq~~v~~~L~~k~~~a~~~~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~~~-ctDNaaMIa~~g 313 (345)
T PTZ00340 235 FTDDLCFSLQETIFAMLVEVTERAMSHCGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDERY-CIDNGAMIAYAG 313 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCChHh-hhhhHHHHHHHH
Confidence 36789999999888877766664322235789999999999999999998886 77888765432 333455666555
No 110
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=1.8 Score=47.23 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=59.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHH-HHHHHHhCCceEEec--CCCchhHHHHHHHHhc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTIL-SCLASIYGCDIYTVQ--RPDSASLGAALRAAHG 494 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~-Qi~Advlg~pv~~~~--~~e~~alGAA~lA~~a 494 (557)
+-+..+++.+|.+...+...+..-- ...+|.++||.+.|=.|+ +++...++..|.|.. ...+.|+|||+.+..-
T Consensus 260 diAasaQ~~lE~l~l~~~~~~~~~~---g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~ 336 (555)
T COG2192 260 DIAASAQAYLEELVLEMLRYLREET---GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKRE 336 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHH
Confidence 4455567899999888776665421 268999999999999999 999999999998865 4568899999998775
No 111
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=85.58 E-value=2.4 Score=44.25 Aligned_cols=69 Identities=26% Similarity=0.320 Sum_probs=36.5
Q ss_pred EEEccCCceEEEEEcCCCC---EEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 14 GFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 14 gIDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
|||||+.++|++-++.+++ +...+..+.|...-. ++.-.|++ .+-+++.+++++.. . ..+
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~----~g~i~d~~----------~l~~~L~~~~~~~~--~-~~k 63 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAIS----DGEIVDPE----------ALAEALKELLKENK--I-KGK 63 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEE----TTEES-HH----------HHHHHHHHHHHHHT-------
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCcc----CCCcCCHH----------HHHHHHHHHHHHcC--C-CCC
Confidence 8999999999999998653 445566666531111 12234444 66666655555432 2 234
Q ss_pred eeEEEEecc
Q 008692 91 VTAVSGSGQ 99 (557)
Q Consensus 91 I~aIgis~~ 99 (557)
-..+++.++
T Consensus 64 ~v~~aip~~ 72 (340)
T PF11104_consen 64 KVVLAIPGS 72 (340)
T ss_dssp EEEEEE-GG
T ss_pred eEEEEeCCC
Confidence 455777764
No 112
>PTZ00297 pantothenate kinase; Provisional
Probab=84.92 E-value=17 Score=45.34 Aligned_cols=75 Identities=20% Similarity=0.130 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCC-cchhhHHHHHHHHh------CCceEEec-CCCchhHHHH
Q 008692 417 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGA-SANQTILSCLASIY------GCDIYTVQ-RPDSASLGAA 488 (557)
Q Consensus 417 ~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGg-a~s~~w~Qi~Advl------g~pv~~~~-~~e~~alGAA 488 (557)
.+++|++|+++-.|.+++-++.-...+...+++|+.+|+. ..++..|+.++..+ ++....++ ....+|+||+
T Consensus 1362 ~~~~Di~~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~ 1441 (1452)
T PTZ00297 1362 ASAIDIVRSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCA 1441 (1452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhh
Confidence 4689999999999999998765433234578999999995 57899999998887 34444444 5568999999
Q ss_pred HHH
Q 008692 489 LRA 491 (557)
Q Consensus 489 ~lA 491 (557)
+..
T Consensus 1442 ~~~ 1444 (1452)
T PTZ00297 1442 TLD 1444 (1452)
T ss_pred hcC
Confidence 864
No 113
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=84.54 E-value=3.4 Score=43.05 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=24.4
Q ss_pred cEEEEEEccCCceEEEEEcCCC---CEEEEEeeecc
Q 008692 10 SLFLGFDSSTQSLKATVLDSNL---NIVASEQLQFD 42 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G---~~v~~~~~~~~ 42 (557)
..++|||||++++|++.+...+ +++.....+.|
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p 38 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLP 38 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECC
Confidence 4689999999999999998543 34454555554
No 114
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=84.29 E-value=1.5 Score=46.13 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=48.8
Q ss_pred ChhhHH---HHHHHHHHHHHHHHH-HHcCCCCCCCE-EEEecCCcchhhHHHHHHHHhCC-ceEEec--CCCchhHHHHH
Q 008692 418 DPPSEV---RALVEGQFLSMRGHA-ERFGLPSPPRR-IIATGGASANQTILSCLASIYGC-DIYTVQ--RPDSASLGAAL 489 (557)
Q Consensus 418 ~~~~l~---rAvlEgia~~~r~~~-~~l~~~~~~~~-i~~~GGga~s~~w~Qi~Advlg~-pv~~~~--~~e~~alGAA~ 489 (557)
...+++ +..+|-+...+-..+ +.. ..++ |.++||.+-|-.++|-+++-.+. .|.++. ..++.++|||+
T Consensus 134 ~~~dlAa~~Q~~~E~~v~~~~~~~~~~~----g~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~ 209 (360)
T PF02543_consen 134 RHADLAASAQKVLEEIVLHLVRHLLERT----GIDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAAL 209 (360)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHH----T--SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHH
Confidence 455665 666777766554332 222 2455 99999999999999999998665 477765 44688999999
Q ss_pred HHHhc
Q 008692 490 RAAHG 494 (557)
Q Consensus 490 lA~~a 494 (557)
.+...
T Consensus 210 ~~~~~ 214 (360)
T PF02543_consen 210 YAWHE 214 (360)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
No 115
>PRK13324 pantothenate kinase; Reviewed
Probab=83.68 E-value=3.8 Score=41.03 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=42.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHh
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAH 493 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~ 493 (557)
|...+...++-|.+..+...++.+++ +. .-+++++||.++ + + .....+..+ .++-...|-.+++..
T Consensus 185 T~~ai~sG~~~g~~~~i~~~~~~~~~~~~~-~~~vi~TGG~a~--~----~-~~~~~~~~~--~~~LvL~GL~~i~~~ 252 (258)
T PRK13324 185 TKTNIRSGLYYGHLGALKELKRRSVEEFGS-PVYTIATGGFAG--L----F-KEEDIFNEI--SPDLILRGIRIAFLE 252 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCChH--H----h-cccCCcceE--CcChHHHHHHHHHHH
Confidence 67777777788888777777777753 32 246999999873 2 2 112333333 456677787776543
No 116
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=83.45 E-value=1.7 Score=43.51 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=28.8
Q ss_pred CCCcEEEEEEccCCceEEEEEcCCCCEEEEEeee
Q 008692 7 PKDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (557)
Q Consensus 7 ~~~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~ 40 (557)
|.++.++.||=|||+.|+-|++.+|+++.+.+-.
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~ 35 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRSE 35 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence 3357899999999999999999999998776533
No 117
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=83.24 E-value=2.7 Score=43.48 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHH---hCCceEEecC
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASI---YGCDIYTVQR 479 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Adv---lg~pv~~~~~ 479 (557)
.+.++.+++.+.++-.+....+...+...+++|.++||.+.|..+++.+.+. .|.+|.+++.
T Consensus 214 ~~~diAasfq~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~ 278 (322)
T TIGR03722 214 RLEDVCYSLQETAFAMLVEVTERALAHTGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPP 278 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCC
Confidence 3678888888888877777776654323568999999999999999999995 4667776543
No 118
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=82.61 E-value=2.8 Score=46.58 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh---CCceEEec----CCCchhHHHHHHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ----RPDSASLGAALRA 491 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pv~~~~----~~e~~alGAA~lA 491 (557)
..++.+++.+.++-.+...++...+...+++|.++||.+.|..+++.+.+.+ +.+|.+++ ...+.++|+|...
T Consensus 218 ~~~iA~~~q~~l~~~l~~~~~~~~~~~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~ 297 (535)
T PRK09605 218 LEDVCYSLQETAFAMLTEVTERALAHTGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLL 297 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHH
Confidence 4567777777777777666665432234679999999999999999999776 67887764 3356677777643
Q ss_pred H
Q 008692 492 A 492 (557)
Q Consensus 492 ~ 492 (557)
.
T Consensus 298 ~ 298 (535)
T PRK09605 298 M 298 (535)
T ss_pred H
Confidence 3
No 119
>PRK13320 pantothenate kinase; Reviewed
Probab=82.32 E-value=4.5 Score=40.11 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=47.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRA 491 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA 491 (557)
|.+.+...++-|.+..+..+++.+++..+--.|+++||.++ ++++.+..++.+ .++-...|-..+.
T Consensus 175 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~vi~TGG~a~------~l~~~l~~~~~~--~p~Lvl~GL~~~~ 240 (244)
T PRK13320 175 TEECIRSGVVWGCVAEIEGLIEAYKSKLPELLVILTGGDAP------FLASRLKNTIFA--DEHAVLKGLNRIL 240 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCHH------HHHHhcCCccEE--CcchHHHHHHHHH
Confidence 78888888888888888888887764112247999999964 467777777765 3556667765543
No 120
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=81.51 E-value=4.3 Score=42.03 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh----CCceEEecC----CCchhHHHHHHHH-
Q 008692 422 EVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY----GCDIYTVQR----PDSASLGAALRAA- 492 (557)
Q Consensus 422 l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl----g~pv~~~~~----~e~~alGAA~lA~- 492 (557)
-+.|.+|+++-.+...+-.. .+++.|+++|-.++++.+..-+.+.| +.++..... ...+|.|+|++|-
T Consensus 239 a~ea~~E~i~k~V~~l~~~~---~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLASV---PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHHHhccc---CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence 56788888887776544432 35788999999999988775555554 546654433 2349999999984
Q ss_pred hccccccCCCCCCHH
Q 008692 493 HGYLCSKKGSFVPIS 507 (557)
Q Consensus 493 ~a~~~~~~G~~~~~~ 507 (557)
.+ -|.|+.+-
T Consensus 316 la-----GG~~~~lv 325 (343)
T PF07318_consen 316 LA-----GGRYKELV 325 (343)
T ss_pred hh-----cccHHHHH
Confidence 44 46665443
No 121
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=81.31 E-value=2.6 Score=43.25 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=48.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh---CCceEEec
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY---GCDIYTVQ 478 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl---g~pv~~~~ 478 (557)
++.++.+++.+.++-.+-..++...+...+++|.++||.+.|..+++.+.+.+ |.++.+++
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 46788888888888877777766543245789999999999999999998887 56777654
No 122
>PRK00976 hypothetical protein; Provisional
Probab=80.48 E-value=6.3 Score=40.61 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchh--hHHHHHHHHhCCceEEecCCCchhHHHHHHHHhc
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQ--TILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~--~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a 494 (557)
...++...+.++..+..++..+ +++.|++.||.++.+ .+.+.+.+.+..++... ..+++++|||++|.--
T Consensus 241 ~~aid~~~~~LA~~IAnLi~ll----DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~L-G~dAGaiGAA~iA~~i 312 (326)
T PRK00976 241 KLAIDTLALFVAMEIASLLLLN----PEDNVVLAGSVGEMDEPDVSERIKELLDKKVLVL-GKESAAIGLALIARDI 312 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCEEEEcCccccCchhHHHHHHHHHhccccccc-CCchHHHHHHHHHHHH
Confidence 4456667777777776666655 468899999999876 45555555555443332 4578999999998754
No 123
>PRK13326 pantothenate kinase; Reviewed
Probab=79.50 E-value=4.5 Score=40.60 Aligned_cols=65 Identities=14% Similarity=0.085 Sum_probs=49.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRA 491 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA 491 (557)
|...|-..++.|.+..+..+++.+++ +. --.|+++||.++ +++..+..+..+ .++-+..|-.++.
T Consensus 187 T~~aI~sGi~~g~~~~I~g~i~~~~~e~~~-~~~vv~TGG~a~------~l~~~~~~~~~~--~~~LvL~GL~~i~ 253 (262)
T PRK13326 187 TSDSVNSGVIYQYKYLIEGVYHDLKRNYDR-EFNLIITGGNSN------LILPLISVDFIF--NLYLTLEGIRILG 253 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHhhCCCCcEE--CcccHHHHHHHHH
Confidence 78888888999999999988888864 32 247999999664 577777777766 4567777877654
No 124
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=4.6 Score=41.70 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhC---CceEEecCCCchhHHHHHHHHhc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYG---CDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg---~pv~~~~~~e~~alGAA~lA~~a 494 (557)
+++++..+.-|.+.-.+....++.-+....+++.+.||.+.|..+++++..... ..+..++. +-+.==+||+|..|
T Consensus 233 d~~dia~sfQ~av~~~L~~kt~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~-~lCtDNaaMIA~ag 311 (342)
T COG0533 233 DKEDIAASFQEAVFDMLVEKTERALKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL-ELCTDNAAMIAYAG 311 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh-HhccchHHHHHHHH
Confidence 688899998888887777666643223457899999999999999999999773 34666542 32333455666554
No 125
>PRK03011 butyrate kinase; Provisional
Probab=76.43 E-value=5.2 Score=42.05 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhC--CceEEecCC---CchhHHHHH
Q 008692 421 SEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG--CDIYTVQRP---DSASLGAAL 489 (557)
Q Consensus 421 ~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg--~pv~~~~~~---e~~alGAA~ 489 (557)
..++.+++-.++.+...+-.+.. +..++.|+++||.+.++.+.+.+-+-+. .||.+.... ++.++||+.
T Consensus 268 ~~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 268 EKAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 34566777777777766665432 2368999999999988887776666555 267665432 255566544
No 126
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=76.29 E-value=7.5 Score=38.53 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=33.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcch
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASAN 459 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s 459 (557)
|.+.|...++.|.+..+...++.+++ +. --.|+++||-++.
T Consensus 177 T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~-~~~vi~TGG~a~~ 219 (243)
T TIGR00671 177 TREAVQSGAVYGVLGLIQGLLKDWKKYFKR-KFAVVITGGDGKY 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCchHh
Confidence 78889999999999999988888764 32 2479999998765
No 127
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=76.09 E-value=16 Score=39.18 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecC
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR 479 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~ 479 (557)
...++++|=+|-+..-++.-++.... ......|.++||+++-+-...+-.++|++||++...
T Consensus 291 ~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 291 ELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 35677778788787777777776554 445689999999999999999999999999998655
No 128
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.08 E-value=6.7 Score=44.66 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=48.7
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLS 89 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 89 (557)
++.+|||+|.|.+=++++|.++.++........ |+ .....+.+.++.+.......
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt---------------P~----------~~~~~~~~~~~~~~~~~~~~ 56 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT---------------PD----------LPSGIVNAGIRLALELLEGS 56 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC---------------CC----------chhhHHHHHHHHHhhccccc
Confidence 478999999999999999998766665543321 33 34444455555444321114
Q ss_pred CeeEEEEeccccceEEEcCCCc
Q 008692 90 KVTAVSGSGQQHGSVYWKKGSA 111 (557)
Q Consensus 90 ~I~aIgis~~~~~~v~vD~~g~ 111 (557)
+|..+.++++-.+=.++-+.|.
T Consensus 57 ~i~~v~~gTT~aTNallerkG~ 78 (674)
T COG0145 57 EVDLVVHGTTLATNALLERKGL 78 (674)
T ss_pred cccEEEEeccHHHHHHHhccCc
Confidence 6777777776555555555554
No 129
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=75.22 E-value=3.4 Score=36.07 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=29.1
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHh
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS 83 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~ 83 (557)
+++||+||+.++++++..+ ........++.. .|..|..++.-.|.+ ++-+++...++++.
T Consensus 1 i~~iDiGs~~~~~~i~~~~-~~~~~~vl~~g~-~~s~gi~~g~Itd~~----------~i~~~i~~a~~~AE 60 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG-SDGYIRVLGVGE-VPSKGIKGGHITDIE----------DISKAIKIAIEEAE 60 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT-EEEEEEEES-----------HHHHH--H----------HHHHHHT--HHHHH
T ss_pred CEEEEcCCCcEEEEEEEeC-CCCcEEEEEEec-ccccccCCCEEEEHH----------HHHHHHHHHHHHHH
Confidence 5789999999999999973 222233333321 233333223334555 77777766666543
No 130
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=74.68 E-value=4 Score=43.92 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCCCcEEEEEEccCCceEEEEEcCC-CCEEEEEeeecc
Q 008692 6 LPKDSLFLGFDSSTQSLKATVLDSN-LNIVASEQLQFD 42 (557)
Q Consensus 6 ~~~~~~~lgIDiGTts~Ka~l~d~~-G~~v~~~~~~~~ 42 (557)
+.++.|=+++|+|||.+++-++|.+ |++++++..-.+
T Consensus 160 ~~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ 197 (614)
T COG3894 160 LKNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNP 197 (614)
T ss_pred ccceeeeeEEecccceeeeEEEeccCCcEEEeeeccCC
Confidence 4566788999999999999999964 999988765443
No 131
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=74.42 E-value=4.5 Score=40.93 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=22.8
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEE
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASE 37 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~ 37 (557)
.+|||+|+|-+|.+.+|++++++...
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~ 27 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKT 27 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEE
Confidence 48999999999999999999987543
No 132
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=72.82 E-value=9.1 Score=38.38 Aligned_cols=58 Identities=9% Similarity=0.133 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhC--CceEEec
Q 008692 421 SEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYG--CDIYTVQ 478 (557)
Q Consensus 421 ~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg--~pv~~~~ 478 (557)
.-++-++++.+|++..-+-.+.. ..+++-|+++||.+++..++..+.+-+. .||.+..
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~P 330 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYP 330 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecC
Confidence 45667888899988777665543 4588999999999999999999999877 4888765
No 133
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=72.15 E-value=16 Score=36.78 Aligned_cols=69 Identities=7% Similarity=0.124 Sum_probs=47.4
Q ss_pred cEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhh-c-CC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK-S-LD 87 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~-~-~~ 87 (557)
.+|.||+=|.|+.|.+++|++|+++..++..-...+.. +-. ...+-+.+.+++... . .+
T Consensus 3 ~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~~i---------g~~----------~~~~rie~~i~~A~~k~g~d 63 (336)
T KOG1794|consen 3 DFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHWLI---------GST----------TCASRIEDMIREAKEKAGWD 63 (336)
T ss_pred ceeEeecCCcceeEEEEECCCCCEeeEeeccccccccC---------Cch----------HHHHHHHHHHHHHHhhcCCC
Confidence 58999999999999999999999998887654332211 112 566667777776543 3 55
Q ss_pred CCC-eeEEEEe
Q 008692 88 LSK-VTAVSGS 97 (557)
Q Consensus 88 ~~~-I~aIgis 97 (557)
++. +++++++
T Consensus 64 ~~~~lr~lgL~ 74 (336)
T KOG1794|consen 64 KKGPLRSLGLG 74 (336)
T ss_pred ccCccceeeee
Confidence 544 6665543
No 134
>PLN02914 hexokinase
Probab=71.97 E-value=9.7 Score=41.67 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=41.5
Q ss_pred EEEEEEccCCceEEEEEcCCCC---EEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc
Q 008692 11 LFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 85 (557)
.+|+||+|.|+.|+++++.+|+ ++...+..+++ |.. ...-..+ ++++-+.+++.++.+.
T Consensus 96 ~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~~----l~~gt~~----------eLFdfIA~~i~~fl~~ 157 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSI--PQE----LMFGTSE----------ELFDFIASGLANFVAK 157 (490)
T ss_pred EEEEEecCCceEEEEEEEecCCCCceeeeeEEEecC--Chh----hccCCHH----------HHHHHHHHHHHHHHHh
Confidence 6899999999999999998763 45555555543 221 1112233 8999999999887753
No 135
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.48 E-value=10 Score=42.74 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=60.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCC---ce----EEecCCCchhHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC---DI----YTVQRPDSASLGAALR 490 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~---pv----~~~~~~e~~alGAA~l 490 (557)
+++.++.+...+++-.+..++..+.+...+++|.++||..+|+.+++-+++.+.. .+ +++...-+-++|=|++
T Consensus 665 ~~~~iA~~fh~~la~~~~e~~~~~a~~~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~ 744 (750)
T COG0068 665 EPEKIATKFHNALAEGFAELAVELAKKYGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVA 744 (750)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHH
Confidence 6888888888888888888877776545688999999999999999999999985 33 3444555678998888
Q ss_pred HH
Q 008692 491 AA 492 (557)
Q Consensus 491 A~ 492 (557)
|+
T Consensus 745 ~~ 746 (750)
T COG0068 745 AA 746 (750)
T ss_pred HH
Confidence 73
No 136
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.27 E-value=3.7 Score=44.63 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=44.7
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHhCC-ceEEecCCCchhHHHHHHHHhc
Q 008692 445 SPPRRIIATGGASANQTILSCLASIYGC-DIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 445 ~~~~~i~~~GGga~s~~w~Qi~Advlg~-pv~~~~~~e~~alGAA~lA~~a 494 (557)
.++++|.+.||.+|-|-..+.+.++||+ |=.-....|+.|+|||+.+++-
T Consensus 352 ~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl 402 (640)
T KOG0102|consen 352 SDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVL 402 (640)
T ss_pred hhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchh
Confidence 5789999999999999999999999998 5556678899999999988875
No 137
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.06 E-value=15 Score=36.12 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCc--ch--hhHHHHHHHHhCCceEEecCCCchhHHHHHHHHh
Q 008692 423 VRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGAS--AN--QTILSCLASIYGCDIYTVQRPDSASLGAALRAAH 493 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga--~s--~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~ 493 (557)
.|-.++.++....+-+.-|.. -...+.+++.|... +. +..-+++.-+++.-...+ .|.+++|.|++|.-
T Consensus 244 arlaldtlal~vamEIagL~~~~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~~~l~--~esaaiG~a~IA~D 317 (332)
T COG4020 244 ARLALDTLALLVAMEIAGLLMVVYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKVAVLP--PESAAIGLALIARD 317 (332)
T ss_pred hhHHHHHHHHHHHHHHhhhhceecCCceEEEecccccccchhhHHHHHHHHHHHHHhhcC--chhhhhhhHHHHHH
Confidence 444555555555444443332 23456788888444 44 245566666666544443 45688999988864
No 138
>PRK00976 hypothetical protein; Provisional
Probab=70.97 E-value=11 Score=38.89 Aligned_cols=20 Identities=20% Similarity=0.670 Sum_probs=17.5
Q ss_pred EEEEEEccCCceEEEEEcCC
Q 008692 11 LFLGFDSSTQSLKATVLDSN 30 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~ 30 (557)
+++|||=|||++|.++.+.+
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~ 21 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGG 21 (326)
T ss_pred eEEeecCCCccEEEEEEcCC
Confidence 68999999999999999433
No 139
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=68.53 E-value=6.5 Score=39.94 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEccCCceEEEEEcCCCCEE
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIV 34 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v 34 (557)
++|||=|||++|.++.+.+++..
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 58999999999999999988754
No 140
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=68.37 E-value=11 Score=40.03 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcc-hhhHHHHHHHHhCC-ceEE
Q 008692 423 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASA-NQTILSCLASIYGC-DIYT 476 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~-s~~w~Qi~Advlg~-pv~~ 476 (557)
++-++|..+|.++..+-.+.. ...++.|++|||... ++..++++.+.+.. ||.+
T Consensus 295 A~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~~~gv~l 352 (388)
T PF00871_consen 295 AKLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLWFLGVKL 352 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcCcCCeEe
Confidence 556789999998888776542 347899999999995 56677888777653 6665
No 141
>PRK13327 pantothenate kinase; Reviewed
Probab=67.44 E-value=1.3e+02 Score=29.74 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a 494 (557)
|...|...++-|++..+...++.+++ +. .-+|+++||.++ .+++.+.. ... .++-...|-+.+|..+
T Consensus 171 T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~-~~~vilTGG~A~------~l~~~l~~-~~~--~p~LvL~GL~~~a~~~ 239 (242)
T PRK13327 171 TDDALTSGCDGAAVALIERSLQHAHRSLGQ-PVRLLVHGGGAP------PLLPLLPD-AEF--RPALVLDGLATWATAA 239 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHHhCCC-CEE--ccCcHHHHHHHHHHhc
Confidence 78888888888888888888887764 32 347999999964 35555532 333 4667888999988776
No 142
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=66.83 E-value=12 Score=37.05 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCC-------CchhHHHHHHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRP-------DSASLGAALRA 491 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~-------e~~alGAA~lA 491 (557)
...++++.++-++-.+....++ ...++|+.+|=| +++.|.-++.+|..++..+.. -+.|.|+|.+.
T Consensus 255 A~~~~~~~l~~l~e~I~~~a~r----~gL~~Vv~~GlG---efLi~~A~~~lg~ec~~i~e~~g~~~s~v~PA~a~a~L~ 327 (330)
T COG1548 255 AEKAYNALLELLAENIEEKAKR----YGLNTVVATGLG---EFLIQEACKRLGYECISIDETYGKEVSKVAPAVAAAKLL 327 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cChhhhhhccch---HHHHHHHHHhhCCeEEEhhhhhccchhhhchHHHHHHHH
Confidence 3444555555554444333333 235789999966 899999999999988765422 24577777764
No 143
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.34 E-value=15 Score=37.70 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCCCCc--EEEEEEccCCceEEEEEcCCCCEEEEE
Q 008692 5 SLPKDS--LFLGFDSSTQSLKATVLDSNLNIVASE 37 (557)
Q Consensus 5 ~~~~~~--~~lgIDiGTts~Ka~l~d~~G~~v~~~ 37 (557)
+++.++ ..+|||||++++|++-+...|+...-.
T Consensus 3 ~l~~k~~~~~vGIdI~~~sVKvvqLs~~g~~~kLe 37 (354)
T COG4972 3 SLFGKKLNAAVGIDIGSHSVKVVQLSRSGNRYKLE 37 (354)
T ss_pred chhcccccceeeEeeccceEEEEEEcccCCceeee
Confidence 445544 689999999999999999877654433
No 144
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=64.99 E-value=4.9 Score=41.59 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.3
Q ss_pred EEEccCCceEEEEEcCCCCEEEEEeeecc
Q 008692 14 GFDSSTQSLKATVLDSNLNIVASEQLQFD 42 (557)
Q Consensus 14 gIDiGTts~Ka~l~d~~G~~v~~~~~~~~ 42 (557)
|||=||+|...+.+|.+|+++...+.+..
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~ 29 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTE 29 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHH
Confidence 79999999999999999999887776543
No 145
>PLN02362 hexokinase
Probab=64.78 E-value=15 Score=40.51 Aligned_cols=60 Identities=7% Similarity=0.160 Sum_probs=39.6
Q ss_pred cEEEEEEccCCceEEEEEcCCCC---EEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS 85 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~ 85 (557)
-.+|+||+|.|+.|+++++..|+ .+...+..|++ |..- ..-..+ ++++-+.+++.++.+.
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~l----~~~~~~----------eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPI--PQHL----MNSTSE----------VLFDFIASSLKQFVEK 157 (509)
T ss_pred eeEEEEecCCceEEEEEEEecCCCcceeeceeEEEec--Chhh----ccCCHH----------HHHHHHHHHHHHHHHh
Confidence 36899999999999999998763 33232233432 2211 112233 8999999999887654
No 146
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=64.74 E-value=12 Score=42.37 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHH-----HHcCC-C---CCCCEEEEecCCcchhhHHHHHHHHhCCc-eE-EecCCCchhHHHH
Q 008692 420 PSEVRALVEGQFLSMRGHA-----ERFGL-P---SPPRRIIATGGASANQTILSCLASIYGCD-IY-TVQRPDSASLGAA 488 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~-----~~l~~-~---~~~~~i~~~GGga~s~~w~Qi~Advlg~p-v~-~~~~~e~~alGAA 488 (557)
.-+.|-.+|-+|-.+-.-+ +.|.. + -.|+.|++.||++|-|....++.+..+.. +- -....|++++||+
T Consensus 329 ~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav 408 (902)
T KOG0104|consen 329 LKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAV 408 (902)
T ss_pred cceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHH
Confidence 3355666666654332211 22322 2 36789999999999999999999988863 32 3456789999999
Q ss_pred HHHHhc
Q 008692 489 LRAAHG 494 (557)
Q Consensus 489 ~lA~~a 494 (557)
+.|+.-
T Consensus 409 ~~aA~L 414 (902)
T KOG0104|consen 409 YQAAHL 414 (902)
T ss_pred HHHHhh
Confidence 999864
No 147
>PRK10854 exopolyphosphatase; Provisional
Probab=64.74 E-value=18 Score=40.06 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=25.2
Q ss_pred CCcEEEEEEccCCceEEEEEcCC-C--CEEEEEeeecc
Q 008692 8 KDSLFLGFDSSTQSLKATVLDSN-L--NIVASEQLQFD 42 (557)
Q Consensus 8 ~~~~~lgIDiGTts~Ka~l~d~~-G--~~v~~~~~~~~ 42 (557)
....+.+|||||.|+|..+++.+ | +++.+.+....
T Consensus 9 ~~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vr 46 (513)
T PRK10854 9 RPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVH 46 (513)
T ss_pred CCCEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEE
Confidence 34578999999999999999965 4 34444444443
No 148
>PRK13331 pantothenate kinase; Reviewed
Probab=64.70 E-value=16 Score=36.36 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=46.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCCc-------eEEecCCCchhHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIYGCD-------IYTVQRPDSASLGAALR 490 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~p-------v~~~~~~e~~alGAA~l 490 (557)
|...|-..++-|.+..+..+++.+++..+--+|+++||.+ +++++.+..+ ..+ .++-+..|-..+
T Consensus 175 T~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~vi~TGG~a------~~l~~~~~~~~~~~~~~~~~--~~~LvL~GL~~i 246 (251)
T PRK13331 175 TQEAIQSGVIYTILAGLRDFIEDWLSLFPDGKIVLTGGDG------ELLHNYLQDLDPELAQRLRV--DPNLIFWGIAAI 246 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCH------HHHHHHhhccccccccccEE--CcchHHHHHHHH
Confidence 7888889999999999999988876411134799999975 4456666553 333 456677787766
Q ss_pred H
Q 008692 491 A 491 (557)
Q Consensus 491 A 491 (557)
+
T Consensus 247 ~ 247 (251)
T PRK13331 247 R 247 (251)
T ss_pred H
Confidence 5
No 149
>PRK09604 UGMP family protein; Validated
Probab=64.35 E-value=16 Score=38.06 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=44.8
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
++||||..+..+-++|+|.+++++............+. ++. -|. ...+++.+.+-..+.+++++.- .++.+
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~---~Gi--~P~--~a~~~H~~~l~~~i~~~L~~~~--~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARY---GGV--VPE--LASRAHVENIVPLIEEALKEAG--LTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhccccc---CCc--Ccc--hhHHHHHHHHHHHHHHHHHHcC--CCHHH
Confidence 58999998888899999977788876653321111111 112 222 0012223344444444443221 56778
Q ss_pred eeEEEEecc
Q 008692 91 VTAVSGSGQ 99 (557)
Q Consensus 91 I~aIgis~~ 99 (557)
|.+|++|.-
T Consensus 73 id~iavt~G 81 (332)
T PRK09604 73 IDAIAVTAG 81 (332)
T ss_pred CCEEEEecC
Confidence 999999873
No 150
>PLN02405 hexokinase
Probab=63.44 E-value=16 Score=40.05 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=41.3
Q ss_pred cEEEEEEccCCceEEEEEcCCCC---EEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhh
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~ 84 (557)
-.+|+||+|.|+.|++++...|+ .+...+..+++ |..- ..-..+ ++++-+.+++.+..+
T Consensus 95 G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~i--p~~~----~~gt~~----------~LFdfIA~~i~~fl~ 156 (497)
T PLN02405 95 GLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSI--PPHL----MTGSSD----------ALFDFIAAALAKFVA 156 (497)
T ss_pred eeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeec--Chhh----ccCCHH----------HHHHHHHHHHHHHHH
Confidence 37899999999999999998763 45555555553 3211 122233 899999999988764
No 151
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=63.18 E-value=6 Score=44.95 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.3
Q ss_pred EEEEEEccCCceEEEEEcCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~ 32 (557)
.++|||+|||++++++++ +|+
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~ 23 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME-GGE 23 (627)
T ss_pred cEEEEEeCcccEEEEEEE-CCE
Confidence 589999999999999998 444
No 152
>PRK03011 butyrate kinase; Provisional
Probab=63.13 E-value=24 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.4
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDS 43 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~ 43 (557)
.+|.|.-|+||+|.++|+ +.+.+.+....|+.
T Consensus 3 ~il~inpgststk~a~~~-~~~~~~~~~~~h~~ 34 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE-DEKPIFEETLRHSA 34 (358)
T ss_pred EEEEEcCCCchheEEEEc-CCceeeeeccccCH
Confidence 489999999999999998 55666666666653
No 153
>PLN02596 hexokinase-like
Probab=62.88 E-value=18 Score=39.71 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=39.5
Q ss_pred EEEEEEccCCceEEEEEcCCCC---EEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhh
Q 008692 11 LFLGFDSSTQSLKATVLDSNLN---IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~ 84 (557)
.+|+||+|.|+.|+++++..|+ +....+..+++ |.. ...-..+ ++++-+.+++.++.+
T Consensus 97 ~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~I--p~~----l~~~t~~----------eLFd~IA~~i~~fl~ 157 (490)
T PLN02596 97 LYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISI--PSN----VLNGTSQ----------ELFDYIALELAKFVA 157 (490)
T ss_pred EEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecC--ChH----hhcCCHH----------HHHHHHHHHHHHHHH
Confidence 6799999999999999998874 34444444442 221 1112334 899998888888765
No 154
>PLN02666 5-oxoprolinase
Probab=61.73 E-value=17 Score=44.54 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=47.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcC--CCCCCCE--EEEecCCcchhhHHHHHHHHhCCc-eEEecCC-CchhHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFG--LPSPPRR--IIATGGASANQTILSCLASIYGCD-IYTVQRP-DSASLGAALRA 491 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~--~~~~~~~--i~~~GGga~s~~w~Qi~Advlg~p-v~~~~~~-e~~alGAA~lA 491 (557)
+.++.+.++++-..-.+...+..+. +|.+++. ++..||+ -++..-.+|+.||+| |.++... -.+|+|+++.=
T Consensus 455 ~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ad 532 (1275)
T PLN02666 455 SVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGLAD 532 (1275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhh
Confidence 4666677777766666666666543 3666654 4444443 356777899999999 8887544 36788888753
No 155
>PRK13328 pantothenate kinase; Reviewed
Probab=61.50 E-value=1.7e+02 Score=29.14 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=51.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHh
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAH 493 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~ 493 (557)
|...|...++-|.+..+..+++.+++ +. .-.|+++||.++ +++..+..+... .++-...|-+.++..
T Consensus 185 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~-~~~vi~TGGda~------~l~~~l~~~~~~--~p~LvL~GL~~i~~~ 253 (255)
T PRK13328 185 TPDAISAGCLAAQAGLIERAWRDLAARWQA-PVRLVLSGGAAD------AVAPALTVPHTR--HDNLVLLGLALIAAA 253 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHhhCCCCCEE--CCCcHHHHHHHHHhh
Confidence 78888888888888888888888764 32 347999999864 577777777766 356788898887754
No 156
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=60.91 E-value=21 Score=34.12 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=30.0
Q ss_pred EEEeccccce--EEEcCCCccccccCCCCCCcccccccccCCCCCccccCCCcHHHHHHHHHH
Q 008692 94 VSGSGQQHGS--VYWKKGSATILSSLDPKKPLVDQLGDAFSTKESPVWMDSSTTAQCREIEKA 154 (557)
Q Consensus 94 Igis~~~~~~--v~vD~~g~pl~~~~d~~~pl~~~l~~~~~l~~~i~w~D~Ra~~~~~~l~~~ 154 (557)
+|++=-.+++ +.+|++|+|+...+|.... ++..|.|.=.-+.+.++++.+.
T Consensus 32 vGVDLGT~~iV~~vlD~d~~Pvag~~~~adv----------VRDGiVvdf~eaveiVrrlkd~ 84 (277)
T COG4820 32 VGVDLGTCDIVSMVLDRDGQPVAGCLDWADV----------VRDGIVVDFFEAVEIVRRLKDT 84 (277)
T ss_pred EEeecccceEEEEEEcCCCCeEEEEehhhhh----------hccceEEehhhHHHHHHHHHHH
Confidence 5554433443 3678888877555553333 2566777666666666666554
No 157
>CHL00094 dnaK heat shock protein 70
Probab=60.88 E-value=6.9 Score=44.39 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.8
Q ss_pred EEEEEEccCCceEEEEEcCCCCE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNI 33 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~ 33 (557)
+++|||+|||++++++++ +|++
T Consensus 3 ~viGIDlGTt~s~va~~~-~g~~ 24 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME-GGKP 24 (621)
T ss_pred ceEEEEeCcccEEEEEEE-CCEE
Confidence 689999999999999996 4543
No 158
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=60.72 E-value=23 Score=37.03 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=47.9
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
.+||||.-+..+-++|+|.+|+++......+.. ..|. ++- |+ ...++|.+.+...+++++++. .....+
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~~---~~G~--Gvv--P~--~a~r~H~~~l~~~i~~~l~~a--~~~~~d 70 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYIT---PPGT--GFL--PR--ETAQHHREHILSLVKEALEEA--KITPSD 70 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeeccc---cCCC--CcC--ch--HHHHHHHHHHHHHHHHHHHHc--CCCHHH
Confidence 589999999999999999888888776554431 1110 222 22 012334444544444444431 155678
Q ss_pred eeEEEEecc
Q 008692 91 VTAVSGSGQ 99 (557)
Q Consensus 91 I~aIgis~~ 99 (557)
|.+|++|.-
T Consensus 71 id~Iavt~G 79 (345)
T PTZ00340 71 ISLICYTKG 79 (345)
T ss_pred CCEEEEecC
Confidence 999999873
No 159
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=60.08 E-value=20 Score=38.93 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHH--------HHHHHHHHHcCCCCCCCEEEEecCCc--chhhHHHHHHHHhC------CceEEecCCCc
Q 008692 419 PPSEVRALVEGQF--------LSMRGHAERFGLPSPPRRIIATGGAS--ANQTILSCLASIYG------CDIYTVQRPDS 482 (557)
Q Consensus 419 ~~~l~rAvlEgia--------~~~r~~~~~l~~~~~~~~i~~~GGga--~s~~w~Qi~Advlg------~pv~~~~~~e~ 482 (557)
...+++.+.+.|+ -.+..+++.++.....+.++..+|.- ..|.+.|++...+. ..|.+....+.
T Consensus 376 ~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~dg 455 (474)
T KOG1369|consen 376 DRKLVREVCDVVSRRAARLAAAGIAAILNKTGELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSEDG 455 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCceEEEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCCC
Confidence 3577788887775 23333344443211112334444443 56777777666655 57888888999
Q ss_pred hhHHHHHHHHhc
Q 008692 483 ASLGAALRAAHG 494 (557)
Q Consensus 483 ~alGAA~lA~~a 494 (557)
+++|||++|+++
T Consensus 456 Sg~GAAL~Aav~ 467 (474)
T KOG1369|consen 456 SGRGAALIAAVA 467 (474)
T ss_pred ccccHHHHHHHH
Confidence 999999999998
No 160
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=59.79 E-value=21 Score=36.53 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=21.4
Q ss_pred EEEEEccCCceEEEEEcCC-C--CEEEEEeeec
Q 008692 12 FLGFDSSTQSLKATVLDSN-L--NIVASEQLQF 41 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~-G--~~v~~~~~~~ 41 (557)
+-+||+||.++|..+++.+ + +++.....+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~v 34 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMV 34 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeee
Confidence 4689999999999999964 3 3444444333
No 161
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=59.58 E-value=23 Score=34.97 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=32.6
Q ss_pred EEEecCCc-chhhHHHHHHHHhC-------CceEEecCCCchhHHHHHHHHhc
Q 008692 450 IIATGGAS-ANQTILSCLASIYG-------CDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 450 i~~~GGga-~s~~w~Qi~Advlg-------~pv~~~~~~e~~alGAA~lA~~a 494 (557)
|-+.|+.- +.|.+.+.+.+.+. .+|......+++.+|||++|+++
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a 241 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSEDGSGVGAAIAAAVA 241 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-SSTHHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEecCchHHHHHHHHHHh
Confidence 55556553 77777766665543 47777778899999999999987
No 162
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=59.14 E-value=16 Score=37.55 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=45.8
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCee
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I~ 92 (557)
||||..+.-+-++|+|.+|+++......+.... .++ +++.+... .+++.+.+...+.+++++.- .++.+|.
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~--~~~-gGi~p~~~----~~~H~~~l~~~i~~~l~~~~--~~~~did 71 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLH--AKY-GGVVPEEA----SRHHAENIPPLLERALIESN--VDKSEID 71 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccc--ccc-CCcCcchh----HHHHHHHHHHHHHHHHHHcC--CCHHHCC
Confidence 689999999999999866888887765543221 111 23433322 12333344443444333211 5677899
Q ss_pred EEEEec
Q 008692 93 AVSGSG 98 (557)
Q Consensus 93 aIgis~ 98 (557)
+|++|.
T Consensus 72 ~iav~~ 77 (305)
T TIGR00329 72 LIAYTQ 77 (305)
T ss_pred EEEEec
Confidence 999987
No 163
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=58.51 E-value=29 Score=38.22 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=24.0
Q ss_pred CcEEEEEEccCCceEEEEEcCC-CC--EEEEEeeec
Q 008692 9 DSLFLGFDSSTQSLKATVLDSN-LN--IVASEQLQF 41 (557)
Q Consensus 9 ~~~~lgIDiGTts~Ka~l~d~~-G~--~v~~~~~~~ 41 (557)
.+++-.|||||.|+|.++++.. |. ++...+...
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~v 40 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKV 40 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEE
Confidence 5688999999999999999963 43 333444433
No 164
>PRK13411 molecular chaperone DnaK; Provisional
Probab=58.28 E-value=9 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.3
Q ss_pred EEEEEEccCCceEEEEEcCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~ 32 (557)
.++|||+|||++++++++. |+
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~ 23 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG-GK 23 (653)
T ss_pred cEEEEEeCcccEEEEEEEC-CE
Confidence 5899999999999999974 54
No 165
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=57.66 E-value=22 Score=35.43 Aligned_cols=66 Identities=20% Similarity=0.117 Sum_probs=46.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~ 492 (557)
|.+.+-..++-|..+.++..++.+++ -..-..++++||.++. +.+.+. .+.. ...-+..|-+.++.
T Consensus 183 T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~------~~~~~~-~~~~--d~~Ltl~Gl~~i~~ 249 (251)
T COG1521 183 TVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL------LLDELD-IDIF--DPNLTLLGLALLLA 249 (251)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh------hhhhcc-ccee--CcchhHHHHHHHhh
Confidence 78889999999999999999988764 2245789999998753 455555 2222 23457777776653
No 166
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=57.46 E-value=10 Score=43.26 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=19.4
Q ss_pred CCCcEEEEEEccCCceEEEEEcC
Q 008692 7 PKDSLFLGFDSSTQSLKATVLDS 29 (557)
Q Consensus 7 ~~~~~~lgIDiGTts~Ka~l~d~ 29 (557)
|+...++|||+|||++++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 44556899999999999999875
No 167
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=57.30 E-value=15 Score=37.72 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC---CCCCCE-EEEecCCcchhhHHHHHHHHhCCceEEecCC-CchhHHHHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL---PSPPRR-IIATGGASANQTILSCLASIYGCDIYTVQRP-DSASLGAAL 489 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~---~~~~~~-i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~-e~~alGAA~ 489 (557)
-.+-++-.+++|.-++|..++.... .--+++ ++++||||.-.-+-+.+++-++.||.+.+++ .++|+|+..
T Consensus 252 v~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~ 327 (342)
T COG1077 252 IAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGK 327 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccch
Confidence 3445566677777788888876431 112345 9999999988888999999999999998755 344444443
No 168
>PRK12440 acetate kinase; Reviewed
Probab=57.18 E-value=15 Score=38.92 Aligned_cols=48 Identities=17% Similarity=0.039 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhh-HHHHHHHHhC
Q 008692 423 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQT-ILSCLASIYG 471 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~-w~Qi~Advlg 471 (557)
++-+++..+|.++..+-.+.. + .++.|+++||...|.. .++.+.+-++
T Consensus 296 A~lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 296 ATLAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 455788888888888776542 4 6899999999996655 6665555444
No 169
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=56.83 E-value=59 Score=34.68 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCc-chhhHHHHHHHHhC
Q 008692 423 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIYG 471 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga-~s~~w~Qi~Advlg 471 (557)
++-++|..+|.++..+-.+.. +..++-|+++||.. .|+..++.+.+-++
T Consensus 302 A~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 302 AQLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 345888899999888876542 44689999999999 88888877766554
No 170
>PRK13329 pantothenate kinase; Reviewed
Probab=56.75 E-value=2.1e+02 Score=28.41 Aligned_cols=67 Identities=13% Similarity=0.004 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHh
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAH 493 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~ 493 (557)
|...|...++.|++..+..+++.+++ +.+ -.|+++||.++ +++..+..++.+ .++-...|-..++..
T Consensus 178 T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~-~~vilTGGda~------~l~~~l~~~~~~--~~~LvL~GL~~i~~~ 246 (249)
T PRK13329 178 TSDALTSGGTQAIAGAVERMFRHLAQHCGAE-PECLLTGGAAW------KLAPSLTVPFEL--VDNLVLDGLLVIAAR 246 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH------HHHhhcCCCCEE--CCCcHHHHHHHHHhh
Confidence 78889999999999999998888864 222 37999999864 578888888776 356788888777653
No 171
>PRK12397 propionate kinase; Reviewed
Probab=56.16 E-value=60 Score=34.64 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCc-chhhHHHHHHHH
Q 008692 423 VRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGAS-ANQTILSCLASI 469 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga-~s~~w~Qi~Adv 469 (557)
++-++|..+|.++..+-.+.. -..++-|+++||.. +|+..++.+.+-
T Consensus 297 A~lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~ 345 (404)
T PRK12397 297 AKLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHN 345 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhh
Confidence 455888888988888776542 12689999999998 555555554443
No 172
>PRK09557 fructokinase; Reviewed
Probab=55.57 E-value=35 Score=34.61 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=29.9
Q ss_pred HHHHHHcCCCCCCeEEEcCChhhhhhhcc---CCC--CCCcEEEEecccceeccccCCC
Q 008692 262 PYFVERFHFNKNCLVVQWSGDNPNSLAGL---TLS--TSGDLAISLGTSDTVFGITDDP 315 (557)
Q Consensus 262 ~~~a~~~GL~~g~pV~~G~~D~~aa~~g~---g~~--~~g~~~~~~GTs~~~~~~~~~~ 315 (557)
+.+.+++| +||+. ..|..|+++|- |.. ....+++++||+--...+.+..
T Consensus 90 ~~l~~~~~----~pv~~-~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG~giv~~G~ 143 (301)
T PRK09557 90 KDLSARLN----REVRL-ANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCGAGVAINGR 143 (301)
T ss_pred HHHHHHHC----CCEEE-ccchhHHHHHHHHhcccCCCCcEEEEEEccceEEEEEECCE
Confidence 34555554 56654 47888887663 322 2344688999887666666643
No 173
>PRK11678 putative chaperone; Provisional
Probab=55.48 E-value=8.8 Score=41.73 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.2
Q ss_pred EEEEEccCCceEEEEEcCCCCE
Q 008692 12 FLGFDSSTQSLKATVLDSNLNI 33 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~ 33 (557)
++|||+|||+.-+++++ +|++
T Consensus 2 ~iGID~GTtNs~va~~~-~~~~ 22 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGKP 22 (450)
T ss_pred eEEEecCccceeeEEee-CCce
Confidence 68999999999999998 5553
No 174
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=55.33 E-value=46 Score=35.77 Aligned_cols=73 Identities=22% Similarity=0.208 Sum_probs=43.9
Q ss_pred EEEEEEccCCceEEEEEcCC--CCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSN--LNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDL 88 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~--G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~ 88 (557)
++.|+||||+.+++++-... |++--...-.+ +..|-+.+.-.|.+ ...+++.++++++.+. ..
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~----~SrGik~G~I~di~----------~~~~sI~~av~~AE~m-ag 71 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSH----PSRGIKKGVIVDLD----------AAAQSIKKAVEAAERM-AG 71 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecc----cCcccccceEEcHH----------HHHHHHHHHHHHHHHh-cC
Confidence 89999999999999988753 43222221122 22333345667777 7778888888776543 22
Q ss_pred CCeeE--EEEec
Q 008692 89 SKVTA--VSGSG 98 (557)
Q Consensus 89 ~~I~a--Igis~ 98 (557)
-+|.. +++++
T Consensus 72 ~~i~~v~vs~sG 83 (418)
T COG0849 72 CEIKSVIVSLSG 83 (418)
T ss_pred CCcceEEEEecc
Confidence 34443 34444
No 175
>PTZ00107 hexokinase; Provisional
Probab=55.30 E-value=27 Score=38.07 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=34.2
Q ss_pred CEEEEecCCc-chhhHHHHHHH----HhC---CceEEecCCCchhHHHHHHHHhc
Q 008692 448 RRIIATGGAS-ANQTILSCLAS----IYG---CDIYTVQRPDSASLGAALRAAHG 494 (557)
Q Consensus 448 ~~i~~~GGga-~s~~w~Qi~Ad----vlg---~pv~~~~~~e~~alGAA~lA~~a 494 (557)
-.|-+.|+.- +.|.+.+.+.. +++ .+|......+++.+|||++|+.+
T Consensus 406 ~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~DGSg~GAAl~AA~~ 460 (464)
T PTZ00107 406 ATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADDGSGKGAAIIAAMV 460 (464)
T ss_pred eEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccCchHHHHHHHHHHh
Confidence 4677778776 56655554444 443 46777778889999999999987
No 176
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=55.08 E-value=20 Score=37.67 Aligned_cols=81 Identities=22% Similarity=0.239 Sum_probs=44.4
Q ss_pred EEEEEEccCCceEEEEEcCC-CCEEEEEeee-ccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhc---
Q 008692 11 LFLGFDSSTQSLKATVLDSN-LNIVASEQLQ-FDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKS--- 85 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~-G~~v~~~~~~-~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~--- 85 (557)
.+|.|..|+||+|..|||.. ++++.+.-.+ ....-..-. .+.+-...-..+.++.+--+++..+++.+.+.
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~Gl~Erig~~~~~~~----~~~~~~~~~~~~~~~~dh~~al~~l~~~l~~~~ii 77 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASGLAERIGLPDAIIT----IKFDGKQKLELEADIADHKEALKLLLETLEEHKII 77 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhhhHHHcCCCCceEE----EEecCccceeeecCCCCHHHHHHHHHHHHHhcchh
Confidence 57999999999999999976 6666555432 111000000 01110001111222225677777788777653
Q ss_pred CCCCCeeEEE
Q 008692 86 LDLSKVTAVS 95 (557)
Q Consensus 86 ~~~~~I~aIg 95 (557)
.+..+|.+||
T Consensus 78 ~~~~~I~~vG 87 (396)
T COG0282 78 KSLDEIDAVG 87 (396)
T ss_pred cchhhhcEEe
Confidence 2346777775
No 177
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=54.29 E-value=23 Score=31.71 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=24.7
Q ss_pred CcEEEEEEccCCceEEEEEcCCCCEEEEEeee
Q 008692 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (557)
Q Consensus 9 ~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~ 40 (557)
+.+++|||=|||. -.+++|.+|+++...+..
T Consensus 31 ~~lIVGiDPG~tt-giAildL~G~~l~l~S~R 61 (138)
T PF04312_consen 31 RYLIVGIDPGTTT-GIAILDLDGELLDLKSSR 61 (138)
T ss_pred CCEEEEECCCcee-EEEEEecCCcEEEEEeec
Confidence 3578999999875 456789999999877654
No 178
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=54.27 E-value=16 Score=41.09 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.8
Q ss_pred cEEEEEEccCCceEEEEEcCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNL 31 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G 31 (557)
+.++|||+|||++.+++++..+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 4789999999999999999774
No 179
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.90 E-value=59 Score=32.98 Aligned_cols=51 Identities=12% Similarity=-0.078 Sum_probs=30.9
Q ss_pred cCHHHHHHcCCCCCCeEEEcCChhhhhhhcc---CC--CCCCcEEEEecccceeccccCCC
Q 008692 260 IAPYFVERFHFNKNCLVVQWSGDNPNSLAGL---TL--STSGDLAISLGTSDTVFGITDDP 315 (557)
Q Consensus 260 l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~---g~--~~~g~~~~~~GTs~~~~~~~~~~ 315 (557)
+.+.+++++| +||+ -..|..|+++|- |. -.+..+++++||+--...+.+..
T Consensus 88 l~~~l~~~~~----~pV~-ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG~giv~~G~ 143 (303)
T PRK13310 88 LRADLSARLG----RDVR-LDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFNGK 143 (303)
T ss_pred HHHHHHHHHC----CCeE-EeccHhHHHHHHhhhccccCCCcEEEEEecCceEEEEEECCE
Confidence 4445556664 4554 456777777652 22 23456788999987666666643
No 180
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=53.90 E-value=13 Score=37.78 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRA 491 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA 491 (557)
+.+-.++-+.|+....- +..+.. ....++|.++|...-.+...+.++ .+|.++...+..+++..|-..+|
T Consensus 216 ~~~~~~~yLsGlLIG~E--l~a~~~~~~~~~~v~LiG~~~L~~~Y~~AL~-~~G~~~~~~d~~~~~~~Gl~~ia 286 (287)
T PF05035_consen 216 PPEEAASYLSGLLIGAE--LAAARPYLWLGQPVALIGSGPLCALYARALA-AQGLPVRRVDADEAALAGLWAIA 286 (287)
T ss_dssp -HHHHHHHHHHHHHHHH--HHHHCTTTSSSSEEEEEE-HHHHHHHHHHHH-HTT-EEEEEEHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HHHHhhcccCCCeEEEEeCHHHHHHHHHHHH-HCCCCceeeCHHHHHHHHHHHHh
Confidence 44445666666655431 223332 235689999999998888877665 45899998877777777877665
No 181
>PRK13410 molecular chaperone DnaK; Provisional
Probab=52.86 E-value=12 Score=42.76 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.7
Q ss_pred EEEEEEccCCceEEEEEcCCCCE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNI 33 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~ 33 (557)
.++|||+|||++++++++. |++
T Consensus 3 ~viGIDlGTt~s~va~~~~-g~~ 24 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG-GKP 24 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC-CeE
Confidence 5899999999999999974 543
No 182
>PRK07058 acetate kinase; Provisional
Probab=52.66 E-value=19 Score=38.12 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCc-chhhHHHHHHHHhC
Q 008692 423 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIYG 471 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga-~s~~w~Qi~Advlg 471 (557)
++-++|..+|.++..+-.+.. | .++.|+++||.. .|+..++.+.+-+.
T Consensus 294 A~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 294 AREALDLFALRIAGEIARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 456888999999888876542 3 689999999999 88888877766554
No 183
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=52.64 E-value=35 Score=38.92 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcch--hhHHH------------HHHHHhCCceEEecCCCchhHHHHH
Q 008692 424 RALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN--QTILS------------CLASIYGCDIYTVQRPDSASLGAAL 489 (557)
Q Consensus 424 rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s--~~w~Q------------i~Advlg~pv~~~~~~e~~alGAA~ 489 (557)
.-..+-++..+..+...+. +++.|++.||.+.. +.+.+ +..-+-+.||.+....+.+.+|||.
T Consensus 250 ~~~~~~lg~~~~nl~~~~~---~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~ 326 (638)
T PRK14101 250 ECFCAILGTFAGNLALTLG---ALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVSA 326 (638)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHH
Confidence 3333334444444333332 35778888888744 33322 2233467899999999999999999
Q ss_pred HHHhccccccCCCCCCH
Q 008692 490 RAAHGYLCSKKGSFVPI 506 (557)
Q Consensus 490 lA~~a~~~~~~G~~~~~ 506 (557)
.+...++.++-|...++
T Consensus 327 ~~~~~~~~~~~~~~~~l 343 (638)
T PRK14101 327 ILAEQLSNRTGGASSAV 343 (638)
T ss_pred HHHHHhccccCCchHHH
Confidence 99888655544444444
No 184
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=51.40 E-value=34 Score=37.96 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=44.8
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSK 90 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 90 (557)
++||||.-+..+-++|++.+|++++.....+.. .. |++-+... .+++.+.+-..+.+++++. .....+
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~~---~~---gg~~p~~~----~~~H~~~l~~~i~~~l~~~--~~~~~~ 69 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYKP---PS---GGIHPREA----AEHHAEAIPKVIKEALEEA--GLKPED 69 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEeeccC---Cc---CCCChHHH----HHHHHHHHHHHHHHHHHHc--CCCHhh
Confidence 689999999999999999778888877654221 11 12322111 1222223333333333321 155678
Q ss_pred eeEEEEec
Q 008692 91 VTAVSGSG 98 (557)
Q Consensus 91 I~aIgis~ 98 (557)
|.+|++|.
T Consensus 70 id~iav~~ 77 (535)
T PRK09605 70 IDLVAFSQ 77 (535)
T ss_pred CCEEEECC
Confidence 99999984
No 185
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=50.46 E-value=34 Score=37.01 Aligned_cols=29 Identities=21% Similarity=0.109 Sum_probs=23.2
Q ss_pred EEccCCceEEEEEcCC-CCEEEEEeeeccC
Q 008692 15 FDSSTQSLKATVLDSN-LNIVASEQLQFDS 43 (557)
Q Consensus 15 IDiGTts~Ka~l~d~~-G~~v~~~~~~~~~ 43 (557)
+|+|+|-+|+.+||.+ ++++..++...|+
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpT 30 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPI 30 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCcc
Confidence 6999999999999965 6777777666653
No 186
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=50.18 E-value=87 Score=31.20 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=23.2
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeeec
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQF 41 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~ 41 (557)
+|.||+|.|++|..+++ +++++..-+.++
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~~~~~~~r~~t 30 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GGKVVQTWRLAT 30 (251)
T ss_pred eEEEEeCCCeEEEEEec-CCeEEEEEeecc
Confidence 68999999999999999 666666555444
No 187
>PTZ00107 hexokinase; Provisional
Probab=49.31 E-value=45 Score=36.37 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=20.5
Q ss_pred cEEEEEEccCCceEEEEEcCCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~ 32 (557)
..+|+||+|.|+.|++++...|.
T Consensus 74 G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 74 GVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ceEEEEecCCceEEEEEEEeCCC
Confidence 35899999999999999998865
No 188
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=49.17 E-value=16 Score=41.75 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.3
Q ss_pred cEEEEEEccCCceEEEEEcCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSN 30 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~ 30 (557)
..++|||+|||+..+++++..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC
Confidence 368999999999999999753
No 189
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=49.12 E-value=15 Score=41.72 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.6
Q ss_pred cEEEEEEccCCceEEEEEcC
Q 008692 10 SLFLGFDSSTQSLKATVLDS 29 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~ 29 (557)
.+++|||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 47899999999999999853
No 190
>PRK13321 pantothenate kinase; Reviewed
Probab=48.74 E-value=2.5e+02 Score=27.83 Aligned_cols=63 Identities=24% Similarity=0.228 Sum_probs=42.5
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCe
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I 91 (557)
+|+||+|.|++|.++||.+ +++...+.+.+ ...+++ ++...+.++++... .+.++|
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-----------~~~~~~----------~~~~~l~~l~~~~~--~~~~~i 57 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-----------KSRTSD----------ELGILLLSLFRHAG--LDPEDI 57 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecC-----------CCCCHH----------HHHHHHHHHHHHcC--CChhhC
Confidence 6899999999999999944 67665444332 122334 67776666665431 234579
Q ss_pred eEEEEec
Q 008692 92 TAVSGSG 98 (557)
Q Consensus 92 ~aIgis~ 98 (557)
.+|++++
T Consensus 58 ~~i~vss 64 (256)
T PRK13321 58 RAVVISS 64 (256)
T ss_pred CeEEEEe
Confidence 9999997
No 191
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=48.60 E-value=12 Score=41.92 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.4
Q ss_pred EEEEEccCCceEEEEEcC
Q 008692 12 FLGFDSSTQSLKATVLDS 29 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~ 29 (557)
++|||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 689999999999999874
No 192
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=48.24 E-value=13 Score=43.37 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.4
Q ss_pred cEEEEEEccCCceEEEEEcCCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~ 32 (557)
+|+||+||||+||=-+|+|.+.+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 47999999999999999997753
No 193
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=48.23 E-value=14 Score=41.72 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.5
Q ss_pred EEEEEccCCceEEEEEcCCCC
Q 008692 12 FLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~ 32 (557)
++|||+|||++++++++. |+
T Consensus 2 viGIDlGtt~s~va~~~~-g~ 21 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG-GE 21 (595)
T ss_pred EEEEEeCcccEEEEEEEC-CE
Confidence 799999999999999974 44
No 194
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=47.92 E-value=33 Score=35.39 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=43.9
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCe
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I 91 (557)
+|+||.-|..+-++|+|.+++++...........+.. ++.-+... .+++.+.+...+++++++.- ....+|
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~---gGi~p~~~----~~~H~~~l~~~i~~~l~~~~--~~~~~i 71 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARY---GGVVPELA----SRAHLEAIPPLIEEALAEAG--LTLSDI 71 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCc---CCcCcchh----HHHHHHHHHHHHHHHHHHcC--CCHHHC
Confidence 5899999999999999865557766554321101111 22332221 12333344444444443311 456789
Q ss_pred eEEEEecc
Q 008692 92 TAVSGSGQ 99 (557)
Q Consensus 92 ~aIgis~~ 99 (557)
.+|+++.-
T Consensus 72 d~iav~~G 79 (314)
T TIGR03723 72 DAIAVTAG 79 (314)
T ss_pred CEEEEecC
Confidence 99999874
No 195
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=47.80 E-value=17 Score=40.96 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.3
Q ss_pred cEEEEEEccCCceEEEEEcCCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~ 32 (557)
..++|||+|||+..++++. +|+
T Consensus 19 ~~viGIDlGTT~S~va~~~-~~~ 40 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT-NRK 40 (595)
T ss_pred ceEEEEEcCcccEEEEEEe-CCe
Confidence 4689999999999999885 444
No 196
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=47.63 E-value=76 Score=33.79 Aligned_cols=60 Identities=18% Similarity=0.064 Sum_probs=48.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCc
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL-PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDS 482 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~ 482 (557)
....+++.+..|+...+...+..+++ ..+++-|+.+||-. .-+.|-.+++|+.+....|.
T Consensus 64 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~~es 124 (396)
T TIGR03492 64 SLRGLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-----PLLFAWLSGKPYAFVGTAKS 124 (396)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-----HHHHHHHcCCCceEEEeecc
Confidence 56788899999999988888888875 45789999999998 66678889999998444443
No 197
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=47.07 E-value=58 Score=32.83 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhh-HHHHHHHHhC------CceEEec-CCCchhHHHHHHHH
Q 008692 421 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQT-ILSCLASIYG------CDIYTVQ-RPDSASLGAALRAA 492 (557)
Q Consensus 421 ~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~-w~Qi~Advlg------~pv~~~~-~~e~~alGAA~lA~ 492 (557)
++++-....++..+..++..+ .++.|++.|+.+..+. +.++..-+-. .+|.... ..+++++|||.++.
T Consensus 212 ~~~~~~~~~la~~l~~l~~~~----dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLKATL----DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 344444444555554444444 4688888888765543 4344333321 2344444 34577889998864
No 198
>PRK13322 pantothenate kinase; Reviewed
Probab=46.99 E-value=15 Score=36.45 Aligned_cols=65 Identities=18% Similarity=0.050 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~ 492 (557)
|...|...++.|.+..+...++.+++ +. --.|+++||.++ +++..+.. +.+ .++-...|-..++.
T Consensus 177 T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~-~~~vilTGG~a~------~l~~~l~~-~~~--~~~LvL~GL~~~~~ 243 (246)
T PRK13322 177 TVDAVERGCLLMLRGFIESQLEQARELWGP-DFEIFLTGGDAP------LLADHLPQ-ARV--VPDLVFVGLAQYCP 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHhhCCC-CEE--CCCcHHHHHHHHHh
Confidence 78888889999999888888888764 32 247999999964 35566665 443 45677888777664
No 199
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=46.83 E-value=78 Score=32.63 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=50.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcch-hhHHHHHHHHhCC----ce---EEecCCCchhHHHH
Q 008692 417 FDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASAN-QTILSCLASIYGC----DI---YTVQRPDSASLGAA 488 (557)
Q Consensus 417 ~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s-~~w~Qi~Advlg~----pv---~~~~~~e~~alGAA 488 (557)
++++|++||.+--|..++-++.-.......+++|+..|-..|. +.-|..+|=.++- .+ ..-.+...+|+||-
T Consensus 275 ~s~eDia~SlL~mIsnNIGqiAyl~A~~~ni~rV~FgG~fiR~~~itM~tLsyAi~fWSkG~~kAlFLrHEGYlGalGAf 354 (371)
T KOG2201|consen 275 VSKEDIARSLLRMISNNIGQIAYLCALNENIKRVYFGGFFIRGHPITMKTLSYAINFWSKGELKALFLRHEGYLGALGAF 354 (371)
T ss_pred cChHHHHHHHHHHHHhhHHHHHHHHHHHhCccEEEEeeeEEecCceehHHHHHHHHHhccchHHhHhhhccchhHHHHHH
Confidence 4899999999999999998875533324578999999988754 5556666655442 11 11234456778876
Q ss_pred HH
Q 008692 489 LR 490 (557)
Q Consensus 489 ~l 490 (557)
+-
T Consensus 355 L~ 356 (371)
T KOG2201|consen 355 LS 356 (371)
T ss_pred hh
Confidence 63
No 200
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=46.40 E-value=1.4e+02 Score=29.46 Aligned_cols=23 Identities=9% Similarity=0.015 Sum_probs=19.0
Q ss_pred EEEEccCCceEEEEEcCCCCEEEE
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVAS 36 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~ 36 (557)
|.||+|.|++|..+|+. ++++..
T Consensus 2 L~iDiGNT~i~~g~~~~-~~~~~~ 24 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-NKVYQF 24 (243)
T ss_pred EEEEECCCcEEEEEEEC-CEEEEE
Confidence 78999999999999994 455554
No 201
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=46.36 E-value=36 Score=30.23 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.1
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeee
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQ 40 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~ 40 (557)
|+|||+|-...-++++|.+|..+.....+
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEe
Confidence 68999999999999999999666555433
No 202
>PRK07157 acetate kinase; Provisional
Probab=45.95 E-value=1e+02 Score=32.95 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcchhh-HHHHHHHHhC
Q 008692 422 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASANQT-ILSCLASIYG 471 (557)
Q Consensus 422 l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~s~~-w~Qi~Advlg 471 (557)
-++=++|..+|.++..+-.+.. +..++.|+++||...|.. .++.+.+-++
T Consensus 294 ~A~lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 294 RAKFALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 3455888899998888876542 446899999999996655 6666555443
No 203
>PRK12408 glucokinase; Provisional
Probab=44.42 E-value=67 Score=33.35 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=21.4
Q ss_pred cEEEEEEccCCceEEEEEcCCCCE
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLNI 33 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~~ 33 (557)
.++|++|||.|++|..++|.+|++
T Consensus 16 ~~~L~~DIGGT~i~~al~d~~g~~ 39 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCASPDA 39 (336)
T ss_pred ccEEEEEcChhhhheeEEeccCCc
Confidence 358999999999999999998873
No 204
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=43.35 E-value=90 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEEccC----CceEEEEEcCCCCEEEEEee
Q 008692 11 LFLGFDSST----QSLKATVLDSNLNIVASEQL 39 (557)
Q Consensus 11 ~~lgIDiGT----ts~Ka~l~d~~G~~v~~~~~ 39 (557)
-+|+|-.|. ..++++++|.+|+++.....
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 477887774 46999999999999988776
No 205
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=42.81 E-value=28 Score=38.25 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=18.9
Q ss_pred cEEEEEEccCCceEEEEEcCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSN 30 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~ 30 (557)
+.+.+||+||-|++.++++..
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~ 23 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEIT 23 (492)
T ss_pred ceEEEEEecCCeEEEEEEecc
Confidence 468899999999999999965
No 206
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=42.55 E-value=21 Score=40.87 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=17.0
Q ss_pred EEEEEEccCCceEEEEEcC
Q 008692 11 LFLGFDSSTQSLKATVLDS 29 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~ 29 (557)
.++|||+|||++++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 4899999999999999863
No 207
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=41.34 E-value=24 Score=33.86 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=17.1
Q ss_pred EEEEEccCCceEEEEEcCCC
Q 008692 12 FLGFDSSTQSLKATVLDSNL 31 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G 31 (557)
+|.||+|.|++|..++|.+.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 58899999999999999773
No 208
>PRK13320 pantothenate kinase; Reviewed
Probab=40.46 E-value=3.7e+02 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVA 35 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~ 35 (557)
++|.||+|.|++|..+|+ +++++.
T Consensus 3 M~L~iDiGNT~ik~~~~~-~~~~~~ 26 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFE-GDELLE 26 (244)
T ss_pred eEEEEEeCCCcEEEEEEE-CCEEEE
Confidence 589999999999999999 445554
No 209
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=40.45 E-value=36 Score=34.16 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcc-----hhhHHHHH---HHH-hCCceEEecCC---CchhHH
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASA-----NQTILSCL---ASI-YGCDIYTVQRP---DSASLG 486 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~-----s~~w~Qi~---Adv-lg~pv~~~~~~---e~~alG 486 (557)
....++++.||+.=.++..+-. ..++-|+++|-.++ +++-..+. +.. ++..|...+.. -.+|-|
T Consensus 250 nle~~~~l~e~vvK~v~tllps----~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~G 325 (374)
T COG2441 250 NLETYNALIEGVVKDVFTLLPS----TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEG 325 (374)
T ss_pred chHHHHHHHHHHHHHHHHhccc----cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccc
Confidence 3344899999987655544333 34577999998887 33322221 111 34455544321 247889
Q ss_pred HHHHHH-hccccccCCCCCCHHH
Q 008692 487 AALRAA-HGYLCSKKGSFVPISN 508 (557)
Q Consensus 487 AA~lA~-~a~~~~~~G~~~~~~~ 508 (557)
||++|- .+ -|.|.-+-+
T Consensus 326 aAiiAnaiA-----GG~yrelvd 343 (374)
T COG2441 326 AAIIANAIA-----GGLYRELVD 343 (374)
T ss_pred hhhhhhhhc-----chhHHHHHH
Confidence 999884 44 566654433
No 210
>PRK13328 pantothenate kinase; Reviewed
Probab=40.00 E-value=29 Score=34.67 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=19.9
Q ss_pred EEEEEccCCceEEEEEcCCCCEE
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIV 34 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v 34 (557)
+|-||+|.|.+|-.++|.+++++
T Consensus 3 ~LliDiGNTriKwa~~~~~~~~~ 25 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAGRPWV 25 (255)
T ss_pred EEEEEeCccceeEEEEcCCCcee
Confidence 68899999999999999765554
No 211
>PLN03184 chloroplast Hsp70; Provisional
Probab=39.89 E-value=24 Score=40.42 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=18.1
Q ss_pred EEEEEEccCCceEEEEEcCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~ 32 (557)
.++|||+|||+.++++++. |+
T Consensus 40 ~viGIDlGTt~s~va~~~~-g~ 60 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG-GK 60 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC-Ce
Confidence 5899999999999999964 44
No 212
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=39.85 E-value=23 Score=36.71 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=16.5
Q ss_pred EEEEccCCceEEEEEcCCCCEE
Q 008692 13 LGFDSSTQSLKATVLDSNLNIV 34 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v 34 (557)
+|||+||+++++... .+|.++
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~ 25 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVL 25 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEE
Confidence 899999999997774 456544
No 213
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=39.39 E-value=55 Score=33.78 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=44.8
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCee
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I~ 92 (557)
||||..+..+-++|++.+|+++......+.. + . +++.+... .+++.+.+-..+.+++++.- ..+.+|.
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~~--~-~---gg~~p~~~----~~~H~~~l~~~i~~~l~~~~--~~~~did 68 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYVP--E-K---GGIHPREA----AEHHAEVAPKLIKEALEEAG--VSLEDID 68 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeeccc--C-c---CCcChhHH----HHHHHHHHHHHHHHHHHHcC--CCHHHCC
Confidence 6899988889999998888888766554421 1 1 12322111 12333344444444444321 5667899
Q ss_pred EEEEecc
Q 008692 93 AVSGSGQ 99 (557)
Q Consensus 93 aIgis~~ 99 (557)
+|++|..
T Consensus 69 ~Iavt~g 75 (322)
T TIGR03722 69 AVAFSQG 75 (322)
T ss_pred EEEEecC
Confidence 9999874
No 214
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=39.32 E-value=67 Score=32.73 Aligned_cols=50 Identities=20% Similarity=0.098 Sum_probs=31.1
Q ss_pred cCHHHHHHcCCCCCCeEEEcCChhhhhhhc-----cCCCCCCcEEEEecccceeccccCC
Q 008692 260 IAPYFVERFHFNKNCLVVQWSGDNPNSLAG-----LTLSTSGDLAISLGTSDTVFGITDD 314 (557)
Q Consensus 260 l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g-----~g~~~~g~~~~~~GTs~~~~~~~~~ 314 (557)
+.+.+.+++| +||+ -..|..++++| .+.-....+++++||+--...+.+.
T Consensus 89 l~~~l~~~~~----~pv~-v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~giv~~G 143 (318)
T TIGR00744 89 LKEKVEARVG----LPVV-VENDANAAALGEYKKGAGKGARDVICITLGTGLGGGIIING 143 (318)
T ss_pred HHHHHHHHHC----CCEE-EechHHHHHHHHHHhcccCCCCcEEEEEeCCccEEEEEECC
Confidence 3344555555 4544 46788888774 3333355688999998766666654
No 215
>PRK13331 pantothenate kinase; Reviewed
Probab=38.78 E-value=4.1e+02 Score=26.47 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=19.7
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVA 35 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~ 35 (557)
.+|.||+|.|++|..+||. .+++.
T Consensus 8 ~~L~iDiGNT~~~~g~f~~-~~~~~ 31 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG-ETLVK 31 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC-CEEEE
Confidence 5799999999999999994 34543
No 216
>PRK09698 D-allose kinase; Provisional
Probab=38.55 E-value=1.5e+02 Score=29.97 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhh-H----HHHHHHHh-------CCceEEec-CCCchhHHH
Q 008692 421 SEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQT-I----LSCLASIY-------GCDIYTVQ-RPDSASLGA 487 (557)
Q Consensus 421 ~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~-w----~Qi~Advl-------g~pv~~~~-~~e~~alGA 487 (557)
.+++...+.++..+..++..+ .++.|++.|+.++... + .+.+.+.+ ..+|.... ..+++++||
T Consensus 215 ~~~~~~~~~la~~l~~li~~l----dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GA 290 (302)
T PRK09698 215 PFIQSLLENLARAIATSINLF----DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGA 290 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhH
Confidence 466777788888888777665 4678888888776532 2 22233222 12344444 345778999
Q ss_pred HHHHHh
Q 008692 488 ALRAAH 493 (557)
Q Consensus 488 A~lA~~ 493 (557)
|.++..
T Consensus 291 a~~~~~ 296 (302)
T PRK09698 291 AILAHQ 296 (302)
T ss_pred HHHHHH
Confidence 998753
No 217
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=38.26 E-value=22 Score=36.13 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=21.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHcC--CCCCCCEEEEecCCcchhhHHHHHHHHhCCceEEecC--CCchhHHHHH
Q 008692 418 DPPSEVRALVEGQFLSMRGHAERFG--LPSPPRRIIATGGASANQTILSCLASIYGCDIYTVQR--PDSASLGAAL 489 (557)
Q Consensus 418 ~~~~l~rAvlEgia~~~r~~~~~l~--~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~--~e~~alGAA~ 489 (557)
+.+++.+++++-+...+.+.++.+. .+...++..+.+.|.-.+++..-+|+.+|.+..++.. .-..|+|+++
T Consensus 208 ~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~g~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 208 SVEEAAEGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGAGPLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHT--EEEE-----------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5677888888888888777777662 2444555444443333478899999999997665443 3467777775
No 218
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=37.63 E-value=24 Score=36.35 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=14.0
Q ss_pred EEEEccCCceEEEEE
Q 008692 13 LGFDSSTQSLKATVL 27 (557)
Q Consensus 13 lgIDiGTts~Ka~l~ 27 (557)
+|||+||+++|+...
T Consensus 11 vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 11 IGIDLGTANTLVYVK 25 (335)
T ss_pred eEEEcCCCcEEEEEC
Confidence 999999999999875
No 219
>PLN02405 hexokinase
Probab=37.06 E-value=81 Score=34.75 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=39.7
Q ss_pred CccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCC-cEEEEecccceecccc
Q 008692 254 HAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSG-DLAISLGTSDTVFGIT 312 (557)
Q Consensus 254 ~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g-~~~~~~GTs~~~~~~~ 312 (557)
|+-++.+-.++-++-||+ +.|++=.-|+...+++..-..+. .+-+++||++....+-
T Consensus 204 G~DVv~lL~~Al~r~~l~--v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 204 GQDVVGELTKAMERVGLD--MRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGTNAAYVE 261 (497)
T ss_pred CchHHHHHHHHHHHcCCC--ceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCeeeEEEe
Confidence 444555555555566885 88888889998888876655554 3678999987655543
No 220
>PLN02914 hexokinase
Probab=36.91 E-value=83 Score=34.57 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=38.4
Q ss_pred CccccccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCC-cEEEEecccceecccc
Q 008692 254 HAVAGCIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSG-DLAISLGTSDTVFGIT 312 (557)
Q Consensus 254 ~~~~G~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g-~~~~~~GTs~~~~~~~ 312 (557)
|+-++.+-.++-++-|++ +.|++=.-|+.+.+++..-..++ .+-+++||++....+-
T Consensus 204 G~DVv~lL~~Al~r~~l~--v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E 261 (490)
T PLN02914 204 GKDVVACLNEAMERQGLD--MRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVE 261 (490)
T ss_pred CchHHHHHHHHHHHcCCC--ceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEe
Confidence 333444444444556875 88888889998888876655554 4678999987655543
No 221
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=36.63 E-value=1.6e+02 Score=27.29 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEEEEccCCceEEEEEcCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~ 32 (557)
.+||||-|++++=-++++.+|+
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999998876
No 222
>PLN02596 hexokinase-like
Probab=36.12 E-value=1.1e+02 Score=33.63 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=35.9
Q ss_pred ccCHHHHHHcCCCCCCeEEEcCChhhhhhhccCCCCCCc-EEEEecccceecccc
Q 008692 259 CIAPYFVERFHFNKNCLVVQWSGDNPNSLAGLTLSTSGD-LAISLGTSDTVFGIT 312 (557)
Q Consensus 259 ~l~~~~a~~~GL~~g~pV~~G~~D~~aa~~g~g~~~~g~-~~~~~GTs~~~~~~~ 312 (557)
.+-.++-++-|+ .+.|++=.-|+...+++..-..+.. +-+++||++....+-
T Consensus 209 ~lL~~Al~r~~l--~v~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGtNacY~E 261 (490)
T PLN02596 209 NDINRALEKHGL--KIRVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVE 261 (490)
T ss_pred HHHHHHHHhcCC--CceEEEEEEcCHHHHHhhhcCCCCeEEEEEEecccceEEEE
Confidence 333455555587 4888999999998888766655543 458999987655543
No 223
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=35.60 E-value=25 Score=39.71 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=16.2
Q ss_pred EEEEEccCCceEEEEEcC
Q 008692 12 FLGFDSSTQSLKATVLDS 29 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~ 29 (557)
++|||+|||+.++++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999984
No 224
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=35.57 E-value=35 Score=36.42 Aligned_cols=76 Identities=22% Similarity=0.104 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH----HHc-CC-C-CCCCEEEEecCCc-chhhHH----HHHHHHhC---CceEEecCCCch
Q 008692 419 PPSEVRALVEGQFLSMRGHA----ERF-GL-P-SPPRRIIATGGAS-ANQTIL----SCLASIYG---CDIYTVQRPDSA 483 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~----~~l-~~-~-~~~~~i~~~GGga-~s~~w~----Qi~Advlg---~pv~~~~~~e~~ 483 (557)
-..++|.+.|.|.-....+. ..+ .+ | .+.-.|...|--- +.+.+. +-+++.++ -++.+....+++
T Consensus 369 er~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~~i~i~~a~dgs 448 (466)
T COG5026 369 ERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAYKAYHVGADGSVIERYPGFRSMLREALKALLGEEGEKIKIKPAEDGS 448 (466)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCCccceeeeecchhhhchhHHHHHHHHHHHhhcccCceeeEEecccCc
Confidence 55677888887754333222 222 12 4 3334466666543 555343 33445555 356665567789
Q ss_pred hHHHHHHHHhc
Q 008692 484 SLGAALRAAHG 494 (557)
Q Consensus 484 alGAA~lA~~a 494 (557)
.+|||++|..+
T Consensus 449 glGAAl~a~~~ 459 (466)
T COG5026 449 GLGAALCALLA 459 (466)
T ss_pred chHHHHHHHHh
Confidence 99999999887
No 225
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=34.95 E-value=25 Score=36.40 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=17.5
Q ss_pred EEEEccCCceEEEEEcCCCCEEE
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVA 35 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~ 35 (557)
+|||+||+++|.... .+|.++.
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~ 27 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLN 27 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEc
Confidence 899999999999775 4565554
No 226
>PRK13322 pantothenate kinase; Reviewed
Probab=34.39 E-value=4.7e+02 Score=25.84 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEEccCCceEEEEEcCCCCEE
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIV 34 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v 34 (557)
+|.||+|.|++|..+||.+++.+
T Consensus 2 ~L~IDiGNT~iK~~l~~~~~~~~ 24 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDNGGQII 24 (246)
T ss_pred EEEEEeCCCcEEEEEEcCCCchh
Confidence 68999999999999999645543
No 227
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=33.89 E-value=34 Score=39.22 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=20.7
Q ss_pred CCCcEEEEEEccCCceEEEEEcCCC
Q 008692 7 PKDSLFLGFDSSTQSLKATVLDSNL 31 (557)
Q Consensus 7 ~~~~~~lgIDiGTts~Ka~l~d~~G 31 (557)
|+++|+||+||||.|+-=+++..+-
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~de 25 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDDE 25 (1088)
T ss_pred CCcceEEEeeccccceeeEEeeccc
Confidence 5678999999999999887776543
No 228
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=33.79 E-value=80 Score=28.65 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.2
Q ss_pred EEEEEccCCceEEEEEcCCCCEE
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIV 34 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v 34 (557)
+||||-|++++--++++.+++.+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~ 23 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKL 23 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEE
Confidence 69999999999999999887543
No 229
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=33.57 E-value=1.1e+02 Score=31.89 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCCCEEEEecCCcchhhHHHHHHHHhCCceEEecCCC-chhHHHHHHHH
Q 008692 445 SPPRRIIATGGASANQTILSCLASIYGCDIYTVQRPD-SASLGAALRAA 492 (557)
Q Consensus 445 ~~~~~i~~~GGga~s~~w~Qi~Advlg~pv~~~~~~e-~~alGAA~lA~ 492 (557)
..+++|+++||||+- +...+.+.++.- .+++.++ +-|+|...++.
T Consensus 290 ~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 290 NSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCChHHHHHHHHHHHHH
Confidence 478999999999974 667788888864 5555444 66778777764
No 230
>PRK00292 glk glucokinase; Provisional
Probab=33.41 E-value=80 Score=32.30 Aligned_cols=31 Identities=16% Similarity=-0.030 Sum_probs=24.3
Q ss_pred cEEEEEEccCCceEEEEEcC-CCCEEEEEeee
Q 008692 10 SLFLGFDSSTQSLKATVLDS-NLNIVASEQLQ 40 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~-~G~~v~~~~~~ 40 (557)
+++||||||.|++|+.++|. +++++...+.+
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~ 33 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYA 33 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEe
Confidence 47899999999999999995 56556554443
No 231
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=32.74 E-value=1.7e+02 Score=30.00 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=32.4
Q ss_pred HHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCC-ceEEecCCC-chhHHHHHH
Q 008692 438 AERFGLPSPPRRIIATGGASANQTILSCLASIYGC-DIYTVQRPD-SASLGAALR 490 (557)
Q Consensus 438 ~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~-pv~~~~~~e-~~alGAA~l 490 (557)
...++.+..++.|+++||||. ++...+.+.++. .|.+++.++ +-|.|-..+
T Consensus 265 ~~~~~~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 265 MTWIGAPESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred HHhcccCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHh
Confidence 334433456889999999997 556666777765 344555544 556665443
No 232
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=32.66 E-value=1e+02 Score=29.46 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=38.8
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCe
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I 91 (557)
+|+||.-|..+-+++++ +++++.+.....+ ....+ .+...+.+++++.- ....+|
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~~------------~~h~~----------~l~~~i~~~l~~~~--~~~~~i 55 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEAG------------RNHSE----------ILLPMIEELLAEAG--LSLQDL 55 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehhh------------HHHHH----------HHHHHHHHHHHHcC--CCHHHC
Confidence 48999999999999998 6777765432211 00111 45555555544321 456788
Q ss_pred eEEEEec
Q 008692 92 TAVSGSG 98 (557)
Q Consensus 92 ~aIgis~ 98 (557)
.+|+++.
T Consensus 56 ~~iav~~ 62 (202)
T TIGR03725 56 DAIAVGV 62 (202)
T ss_pred CEEEEec
Confidence 8888876
No 233
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=32.53 E-value=1.3e+02 Score=26.86 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEEccCCceEEEEEcCCCCE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNI 33 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~ 33 (557)
.+||||.|+..+=.++-|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 48999999999999999998764
No 234
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=32.44 E-value=1.8e+02 Score=28.78 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=49.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHH---h-CCc----eEEecCCCchhHHH
Q 008692 416 EFDPPSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASI---Y-GCD----IYTVQRPDSASLGA 487 (557)
Q Consensus 416 ~~~~~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Adv---l-g~p----v~~~~~~e~~alGA 487 (557)
++++.++.++++-.|.-.+-++.-...+...+.+|+..|...|+.+..-..-|- . -.| ..+-.....+|+||
T Consensus 247 ~F~p~di~~sll~aisnnigqiAyl~A~~~n~qNIyfgGSf~rnhl~tm~tl~Yai~~ws~~t~~ayfl~hegylGa~GA 326 (342)
T COG5146 247 EFTPSDILASLLGAISNNIGQIAYLVAREFNTQNIYFGGSFHRNHLLTMVTLDYAILRWSKPTMNAYFLEHEGYLGAIGA 326 (342)
T ss_pred hcCcHHHHHHHHHHHhcchhhhHHHHHHhhccceEEEeeeeccchhhhhhhhHHHHHhhcCcccceeeeeccchhhHHHH
Confidence 468999999999888877665543322234678999999778887655433221 1 123 23333445678888
Q ss_pred HHHHHh
Q 008692 488 ALRAAH 493 (557)
Q Consensus 488 A~lA~~ 493 (557)
-++.+.
T Consensus 327 f~~~at 332 (342)
T COG5146 327 FYLGAT 332 (342)
T ss_pred Hhhccc
Confidence 776543
No 235
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=32.19 E-value=1.1e+02 Score=31.60 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=27.2
Q ss_pred CCEEEEecCCc-chhhHHH------HH------HHHh-CCceEEecCCCchhHHHHHHHH
Q 008692 447 PRRIIATGGAS-ANQTILS------CL------ASIY-GCDIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 447 ~~~i~~~GGga-~s~~w~Q------i~------Advl-g~pv~~~~~~e~~alGAA~lA~ 492 (557)
-.-|++.||.+ |...+.+ -+ .+++ .+||.+....+.+.+|||..|.
T Consensus 255 ~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 255 RGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHH
T ss_pred CeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHh
Confidence 35699999997 4433322 11 2233 4699999988999999999875
No 236
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=31.87 E-value=1.5e+02 Score=30.94 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCC------CCCC----------------CEEEEec-CC--cchhhHHHHHHHHhCCc
Q 008692 419 PPSEVRALVEGQFLSMRGHAERFGL------PSPP----------------RRIIATG-GA--SANQTILSCLASIYGCD 473 (557)
Q Consensus 419 ~~~l~rAvlEgia~~~r~~~~~l~~------~~~~----------------~~i~~~G-Gg--a~s~~w~Qi~Advlg~p 473 (557)
..+.+|-++.++.|.+|.+-+.... ..++ ..|+++| |+ +....|+.-+|.-.|..
T Consensus 36 ~~~~ikr~lr~l~~d~R~~k~~f~~~~p~t~~~Pi~~~~~~~~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~ 115 (509)
T KOG2853|consen 36 GEDVIKRVLRLLSYDFRRWKRLFQEADPFTRRLPIAHMKHGTLDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLN 115 (509)
T ss_pred chHHHHHHHHhccchHHHHHHhhcccccccccCCCcccccccccccccccccCEEEECCCccchhhHHHHHHHhhcCCce
Confidence 6788999999999999988776541 1233 2344444 44 46789999999999988
Q ss_pred eEEecCCC
Q 008692 474 IYTVQRPD 481 (557)
Q Consensus 474 v~~~~~~e 481 (557)
|.+.+..+
T Consensus 116 VvVVErdd 123 (509)
T KOG2853|consen 116 VVVVERDD 123 (509)
T ss_pred EEEEeccC
Confidence 88876543
No 237
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=31.49 E-value=1.9e+02 Score=29.55 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=27.7
Q ss_pred CcEEEEEEccCCceEEEEEcCCCCEEEEEe
Q 008692 9 DSLFLGFDSSTQSLKATVLDSNLNIVASEQ 38 (557)
Q Consensus 9 ~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~ 38 (557)
++|+||||-|.|+++++|.|.+|+++....
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~ 33 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGNVLGRGK 33 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCcEEEEec
Confidence 569999999999999999999999998764
No 238
>PRK13324 pantothenate kinase; Reviewed
Probab=30.93 E-value=3.2e+02 Score=27.29 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=38.3
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCe
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKV 91 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I 91 (557)
+|.||+|.|++|..++|. ++++...+.+.. . .....+ ++...+...++... .+..+|
T Consensus 2 iL~iDiGNT~ik~gl~~~-~~~~~~~r~~t~-~---------~~~t~d----------e~~~~l~~~~~~~~--~~~~~i 58 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG-DRIVSQIRYATS-S---------VDSTSD----------QMGVFLRQALRENS--VDLGKI 58 (258)
T ss_pred EEEEEeCCCceEEEEEEC-CEEEEEEEEecC-c---------cccchH----------HHHHHHHHHHHhcC--CCccCC
Confidence 789999999999999993 345544333220 0 111222 55555555543321 344568
Q ss_pred eEEEEecc
Q 008692 92 TAVSGSGQ 99 (557)
Q Consensus 92 ~aIgis~~ 99 (557)
.+|.+|+-
T Consensus 59 ~~viisSV 66 (258)
T PRK13324 59 DGCGISSV 66 (258)
T ss_pred CeEEEEeC
Confidence 88888863
No 239
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=30.73 E-value=22 Score=37.34 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCEEEEecCCcchhhHHHHHHHHhCC--c------eEEe--c-CCCchhHHHHHHHHhc
Q 008692 447 PRRIIATGGASANQTILSCLASIYGC--D------IYTV--Q-RPDSASLGAALRAAHG 494 (557)
Q Consensus 447 ~~~i~~~GGga~s~~w~Qi~Advlg~--p------v~~~--~-~~e~~alGAA~lA~~a 494 (557)
.++|+++||+|+-+-+.+.+.+-++. | +.+. . ...++-+|++++|...
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~ 348 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLS 348 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCch
Confidence 46799999999999999888888773 2 2222 2 2335667999988654
No 240
>PRK12379 propionate/acetate kinase; Provisional
Probab=30.55 E-value=75 Score=33.84 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCcc-hhhHHHHHHHHh
Q 008692 423 VRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGASA-NQTILSCLASIY 470 (557)
Q Consensus 423 ~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga~-s~~w~Qi~Advl 470 (557)
++=++|..+|.++..+-.+.. + .++.|+++||... ++..++.+.+-|
T Consensus 293 A~lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~L 342 (396)
T PRK12379 293 AQLAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhh
Confidence 445788889988888776542 5 7899999999984 455555554443
No 241
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=30.14 E-value=83 Score=31.56 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHh--CCceEEec
Q 008692 420 PSEVRALVEGQFLSMRGHAERFGLPSPPRRIIATGGASANQTILSCLASIY--GCDIYTVQ 478 (557)
Q Consensus 420 ~~l~rAvlEgia~~~r~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advl--g~pv~~~~ 478 (557)
.++.+++.+.++-.+...+...-+..+.+.|.++||.+.|..+++-+.+.. +.++..+.
T Consensus 195 ~~iA~s~q~~~~~~l~~~~~~a~~~~~~~~lv~~GGVaaN~~lr~~l~~~~~~~~~~~~p~ 255 (268)
T PF00814_consen 195 ADIAASFQEAIADHLAKKAPRALEKPRAKSLVVSGGVAANKYLREGLRKLCSEGIKLFFPP 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGHHHHHHHHHHHHHHTSEEE---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHcCCEEEcCC
Confidence 455666666555444444432211135789999999999999998876554 66666654
No 242
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=29.42 E-value=1.2e+02 Score=32.50 Aligned_cols=50 Identities=6% Similarity=0.023 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--CCCCCEEEEecCCc-chhhHHHHHHHHhC
Q 008692 422 EVRALVEGQFLSMRGHAERFGL--PSPPRRIIATGGAS-ANQTILSCLASIYG 471 (557)
Q Consensus 422 l~rAvlEgia~~~r~~~~~l~~--~~~~~~i~~~GGga-~s~~w~Qi~Advlg 471 (557)
-++-++|..+|.++..+-.+.. ...++-|++|||.. .|+.+++.+.+-+.
T Consensus 297 ~A~lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 297 RAKLALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3455888889988888776542 24689999999998 99888887776654
No 243
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=29.13 E-value=97 Score=26.68 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.2
Q ss_pred cCCceEEEEEcCCCCEEEEEeeec
Q 008692 18 STQSLKATVLDSNLNIVASEQLQF 41 (557)
Q Consensus 18 GTts~Ka~l~d~~G~~v~~~~~~~ 41 (557)
.-|++||-|||.+|++|+.+..-+
T Consensus 15 ~Pt~~RARlyd~dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDPDGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECCCCCEEeeccccc
Confidence 346999999999999999776665
No 244
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=28.54 E-value=1.1e+02 Score=29.89 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=41.4
Q ss_pred EEEEEEccCCceEEEEEcC-CCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCC
Q 008692 11 LFLGFDSSTQSLKATVLDS-NLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLS 89 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 89 (557)
.+|+||..|..+-+++++. +|+++.+.....+- . ..| .+...+.+++.+.- ....
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~r----~----hse--------------~l~~~i~~ll~~~~--~~~~ 57 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLKR----N----HAE--------------RLMPMIDELLKEAG--LSLQ 57 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEeccc----c----HHH--------------HHHHHHHHHHHHcC--CCHH
Confidence 4899999999999888886 57787877655431 0 011 45555554444321 3456
Q ss_pred CeeEEEEec
Q 008692 90 KVTAVSGSG 98 (557)
Q Consensus 90 ~I~aIgis~ 98 (557)
++.+|+|+.
T Consensus 58 dld~iav~~ 66 (220)
T COG1214 58 DLDAIAVAK 66 (220)
T ss_pred HCCEEEEcc
Confidence 788888765
No 245
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=27.98 E-value=1.3e+02 Score=32.08 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.0
Q ss_pred EEEEEEccCCceEEEEEcCC--CCEEEEEee
Q 008692 11 LFLGFDSSTQSLKATVLDSN--LNIVASEQL 39 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~--G~~v~~~~~ 39 (557)
.+|.|..|+||+|..|||.+ ++++.+...
T Consensus 5 ~iLvlN~GSSSlKf~lf~~~~~~~~l~~G~~ 35 (404)
T TIGR00016 5 KILVINAGSSSLKFALFDYTNGETVLLSGLA 35 (404)
T ss_pred eEEEEECChHhheEEEEecCCCCceEEEEEE
Confidence 38999999999999999965 456655543
No 246
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=27.87 E-value=37 Score=35.24 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=16.4
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEE
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASE 37 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~ 37 (557)
-+|||+||++++...- .+|.++.+.
T Consensus 3 ~igIDLGT~~t~i~~~-~~Giv~~ep 27 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVK-GKGIVLNEP 27 (326)
T ss_dssp EEEEEE-SSEEEEEET-TTEEEEEEE
T ss_pred ceEEecCcccEEEEEC-CCCEEEecC
Confidence 4899999999887433 356555543
No 247
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=27.57 E-value=82 Score=34.89 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=49.6
Q ss_pred CCcchhhHHHHHHHHhCCceEEecCCCchhHHHHHHHHhccccccCCCCCCHHHHHhhhcccccceeecccccCchhhHH
Q 008692 455 GASANQTILSCLASIYGCDIYTVQRPDSASLGAALRAAHGYLCSKKGSFVPISNMYKDKLEKTSLSCKLAVTAGDQQLVS 534 (557)
Q Consensus 455 Gga~s~~w~Qi~Advlg~pv~~~~~~e~~alGAA~lA~~a~~~~~~G~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~~ 534 (557)
+.+|-.++.|++-|++.=.+..+ ...++.|||-++.+. +|.|...+.-. . . ..+-.|-|+... +
T Consensus 101 e~tRYqfflQlKqDll~GRL~Cp-~~~AaeLaAl~lQsE------LGDYn~~~Ht~-~-y-VSefRf~p~Qte------~ 164 (616)
T KOG3530|consen 101 ENTRYQFFLQLKQDLLSGRLYCP-FETAAELAALILQSE------LGDYNEEEHTG-G-Y-VSEFRFLPNQTE------E 164 (616)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHH------hcCCChhhccc-c-c-eeeeEecccccH------H
Confidence 34566689999999998877764 345788898888776 67774322211 1 1 124567888754 4
Q ss_pred HHHHHHHHHHHHH
Q 008692 535 KYAVMMKKRLEIE 547 (557)
Q Consensus 535 ~Y~~~y~~y~~l~ 547 (557)
.=.+.+++|+++.
T Consensus 165 LE~~I~e~hK~~r 177 (616)
T KOG3530|consen 165 LEERIFELHKELR 177 (616)
T ss_pred HHHHHHHHHHHhc
Confidence 4455667776653
No 248
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=27.26 E-value=2.2e+02 Score=29.27 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHHcCCCCCCCEEEEecCCcchhhHHHHHHHHhCC---ceEEecCCCc
Q 008692 436 GHAERFGLPSPPRRIIATGGASANQTILSCLASIYGC---DIYTVQRPDS 482 (557)
Q Consensus 436 ~~~~~l~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~---pv~~~~~~e~ 482 (557)
.+.+.+..-..+++|+++||||. ++...+-+.++. .+.+++.++-
T Consensus 262 ~i~~~~~~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqf 309 (318)
T PF06406_consen 262 RILRELGDFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQF 309 (318)
T ss_dssp HHHHHHTTS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGG
T ss_pred HHHHHHhhhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchh
Confidence 33444443235789999999986 677778888774 6777776663
No 249
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=26.49 E-value=1.4e+02 Score=31.21 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.7
Q ss_pred EEEEEccCCceEEEEEcCCCCEEEEEe
Q 008692 12 FLGFDSSTQSLKATVLDSNLNIVASEQ 38 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~~v~~~~ 38 (557)
+|.|.+|+||+|++||+.++.++.+..
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~ 28 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETL 28 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeee
Confidence 799999999999999999998776543
No 250
>PRK14878 UGMP family protein; Provisional
Probab=26.27 E-value=1.1e+02 Score=31.56 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=41.3
Q ss_pred EEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhhcCCCCCee
Q 008692 13 LGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSKSLDLSKVT 92 (557)
Q Consensus 13 lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~I~ 92 (557)
||||.-+.-+-++|+| ++++++.....+. .+. +++-+... .+++.+.+-..+.+++++. ..++.+|.
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~~--~~~----gg~~p~~~----~~~h~~~l~~~i~~~l~~a--~~~~~did 67 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTYV--PEK----GGIHPREA----AQHHAEVAPELLRKALEKA--GISIEDID 67 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEecc--cCc----CCcCccHH----HHHHHHHHHHHHHHHHHHc--CCCHHHCC
Confidence 6899888888999998 4557776655442 111 12221111 1222233444344444321 15677899
Q ss_pred EEEEecc
Q 008692 93 AVSGSGQ 99 (557)
Q Consensus 93 aIgis~~ 99 (557)
+|++|.-
T Consensus 68 ~Iavt~g 74 (323)
T PRK14878 68 AVAVSQG 74 (323)
T ss_pred EEEEecC
Confidence 9999873
No 251
>PTZ00288 glucokinase 1; Provisional
Probab=26.17 E-value=2.1e+02 Score=30.72 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=32.4
Q ss_pred CCCEEEEecCCc-chhhHHH------HH-----------HHHh-CCceEE-ecCCCchhHHHHHHHHhc
Q 008692 446 PPRRIIATGGAS-ANQTILS------CL-----------ASIY-GCDIYT-VQRPDSASLGAALRAAHG 494 (557)
Q Consensus 446 ~~~~i~~~GGga-~s~~w~Q------i~-----------Advl-g~pv~~-~~~~e~~alGAA~lA~~a 494 (557)
.++.|++.||++ ++..+.+ .+ .+.+ .+||.+ ....+.+.+|||..|...
T Consensus 323 ~P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~ 391 (405)
T PTZ00288 323 LPLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQL 391 (405)
T ss_pred CCCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHh
Confidence 456688888775 4433322 11 2333 369987 777889999999998765
No 252
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=26.11 E-value=61 Score=33.58 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=11.0
Q ss_pred EEEEEccCCceE
Q 008692 12 FLGFDSSTQSLK 23 (557)
Q Consensus 12 ~lgIDiGTts~K 23 (557)
.+|||+||++++
T Consensus 6 ~~giDlGt~~~~ 17 (335)
T PRK13929 6 EIGIDLGTANIL 17 (335)
T ss_pred eEEEEcccccEE
Confidence 489999999997
No 253
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=25.71 E-value=85 Score=30.56 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHcCC-CCCCCEEEEecCC-cchhhHHHHHHHHhCC
Q 008692 425 ALVEGQFLSMRGHAERFGL-PSPPRRIIATGGA-SANQTILSCLASIYGC 472 (557)
Q Consensus 425 AvlEgia~~~r~~~~~l~~-~~~~~~i~~~GGg-a~s~~w~Qi~Advlg~ 472 (557)
|.|--...++++++|.|++ |.+.+-+...||. ...++|-|+=||+...
T Consensus 163 alMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~~ 212 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYAE 212 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCccCc
Confidence 4444455678999999986 7775555555666 5777777887777643
No 254
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=25.67 E-value=1.4e+02 Score=32.50 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=39.0
Q ss_pred cEEEEEEccCCceEEEEEcCCCC--EEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHhh
Q 008692 10 SLFLGFDSSTQSLKATVLDSNLN--IVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLSK 84 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G~--~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~~ 84 (557)
.-+++||+|.|+.|..++-..|. .+......|.+ |.. .-+... +++|+.+..++....+
T Consensus 86 G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~i--p~~-----~m~gt~---------~~Lfd~Ia~~l~~F~~ 146 (474)
T KOG1369|consen 86 GKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAI--PEE-----IMQGTG---------EELFDFIARCLADFLD 146 (474)
T ss_pred CCEEEEecCCCceEEEEEEecCCcccceeeeeeEec--CHH-----HHcCch---------HHHHHHHHHHHHHHHH
Confidence 46899999999999999998866 34444344432 221 222222 2899998888877543
No 255
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=25.61 E-value=98 Score=27.02 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhhc--CCCCCeeEEEEeccc
Q 008692 69 LMWIEALDLMLQKLSKS--LDLSKVTAVSGSGQQ 100 (557)
Q Consensus 69 ~~~~~a~~~~~~~l~~~--~~~~~I~aIgis~~~ 100 (557)
+++++++.++++++.+. +.+++|..|=||...
T Consensus 16 e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~ 49 (118)
T PF07736_consen 16 EEILEATRELLEEILERNELSPEDIVSIIFTVTP 49 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 49999999999998775 778999999988763
No 256
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=25.37 E-value=2.4e+02 Score=25.63 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.7
Q ss_pred EEEEEccCCceEEEEEcCCCC
Q 008692 12 FLGFDSSTQSLKATVLDSNLN 32 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~~G~ 32 (557)
+||||-|++++=-++++.+++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~ 22 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGR 22 (154)
T ss_pred EEEEccCcCceEEEEEEeeCC
Confidence 799999999999999997654
No 257
>PRK13329 pantothenate kinase; Reviewed
Probab=24.85 E-value=48 Score=32.98 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=16.5
Q ss_pred EEEEEccCCceEEEEEcC
Q 008692 12 FLGFDSSTQSLKATVLDS 29 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l~d~ 29 (557)
+|-||+|.|.+|..++|.
T Consensus 3 ~LliD~GNTriKw~~~~~ 20 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYDA 20 (249)
T ss_pred EEEEEcCcchheeeEecc
Confidence 678999999999999994
No 258
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=24.49 E-value=55 Score=35.53 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred EEEEEEccCCceEEEE
Q 008692 11 LFLGFDSSTQSLKATV 26 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l 26 (557)
+.+|||||||.++.++
T Consensus 4 ~SVGIDIGTSTTQlvf 19 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVF 19 (473)
T ss_pred EEEEEeecCCceeEEE
No 259
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=24.23 E-value=1.4e+02 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.7
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVA 35 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~ 35 (557)
.+++||+|+-+.=-++++.+++.+.
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~ 26 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIR 26 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEE
Confidence 5899999999999999998876544
No 260
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.63 E-value=1.1e+02 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.0
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEEEE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVASE 37 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~~~ 37 (557)
-.|.||+|++.+-++++|++ ++.+--
T Consensus 228 palvVd~GngHttaalvded-RI~gv~ 253 (342)
T COG4012 228 PALVVDYGNGHTTAALVDED-RIVGVY 253 (342)
T ss_pred ceEEEEccCCceEEEEecCC-eEEEEe
Confidence 36889999999999999998 776543
No 261
>PLN02666 5-oxoprolinase
Probab=23.51 E-value=2.1e+02 Score=35.40 Aligned_cols=86 Identities=7% Similarity=-0.015 Sum_probs=53.3
Q ss_pred CCcEEEEEEccCCceEEEEEcCCCCEEEEEeeeccCCCCCCCCCCceeeCCCCCCCccCChhHHHHHHHHHHHHHh----
Q 008692 8 KDSLFLGFDSSTQSLKATVLDSNLNIVASEQLQFDSELPHYKTKDGVYRDPSNNGRIVSPTLMWIEALDLMLQKLS---- 83 (557)
Q Consensus 8 ~~~~~lgIDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~p~~g~~~~~eqd~~~~~~~~~~~~~~~~a~~~~~~~l~---- 83 (557)
++.|.+|||+|.|-+-++++|.++.-+...+.+. ..| .||. +...+.+.++++.+.
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~s--ttp---------~d~~---------~gv~~Gi~~~l~~~~~~~~ 66 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLS--VDP---------ANYD---------DAPREGIRRILEEVTGKKI 66 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEecCCCeEEEEEeCC--CCC---------CChh---------HHHHHHHHHHHHHHhcCCc
Confidence 4579999999999999999998765333333222 112 2333 146666766666553
Q ss_pred --hc-CCCCCeeEEEEeccccceEEEcCCCccc
Q 008692 84 --KS-LDLSKVTAVSGSGQQHGSVYWKKGSATI 113 (557)
Q Consensus 84 --~~-~~~~~I~aIgis~~~~~~v~vD~~g~pl 113 (557)
+. .++.+|..|..+++..+=.++..+|.++
T Consensus 67 ~~~~~~~~~~i~~v~hGTT~atNAllerkGa~v 99 (1275)
T PLN02666 67 PRSAKIPTERIEWIRMGTTVATNALLERKGERI 99 (1275)
T ss_pred ccccCCChHHccEEEEechHHHHHHHhccCCcE
Confidence 11 3445777787777665555555555443
No 262
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=22.73 E-value=56 Score=33.69 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=13.0
Q ss_pred EEEEEccCCceEEEE
Q 008692 12 FLGFDSSTQSLKATV 26 (557)
Q Consensus 12 ~lgIDiGTts~Ka~l 26 (557)
.+|||+||+++|+..
T Consensus 7 ~igIDlGt~~~~i~~ 21 (334)
T PRK13927 7 DLGIDLGTANTLVYV 21 (334)
T ss_pred eeEEEcCcceEEEEE
Confidence 489999999999843
No 263
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=21.45 E-value=5.6e+02 Score=25.87 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=22.4
Q ss_pred CCCCCCcEEEEEEccCCceEEE-EEcCCCCEE
Q 008692 4 YSLPKDSLFLGFDSSTQSLKAT-VLDSNLNIV 34 (557)
Q Consensus 4 ~~~~~~~~~lgIDiGTts~Ka~-l~d~~G~~v 34 (557)
++..++.+.++||+.|. +... .++.+++.+
T Consensus 170 DN~~~Ggi~~~ID~~tG-l~~~~~~~~~~~~~ 200 (285)
T PF14397_consen 170 DNFHQGGIGVGIDLATG-LGRFAGYDQDGERY 200 (285)
T ss_pred cccCCCCEEEEEecCCC-ccccccccCCCCEe
Confidence 35556678999999988 6666 578887765
No 264
>COG1647 Esterase/lipase [General function prediction only]
Probab=21.24 E-value=1.3e+02 Score=29.55 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=24.9
Q ss_pred ccCChhHHHHHHHHHHHHHhhcCCCCCeeEEEEe
Q 008692 64 IVSPTLMWIEALDLMLQKLSKSLDLSKVTAVSGS 97 (557)
Q Consensus 64 ~~~~~~~~~~a~~~~~~~l~~~~~~~~I~aIgis 97 (557)
....+++||+.++...+.|.++ .-++|..+|+|
T Consensus 61 l~t~~~DW~~~v~d~Y~~L~~~-gy~eI~v~GlS 93 (243)
T COG1647 61 LKTTPRDWWEDVEDGYRDLKEA-GYDEIAVVGLS 93 (243)
T ss_pred hcCCHHHHHHHHHHHHHHHHHc-CCCeEEEEeec
Confidence 3445559999999999999865 23578877776
No 265
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=21.19 E-value=1.3e+02 Score=30.71 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCC-EEEEecCCc-ch-hhHHH------------HHHHHhCCceEEecCCCchhHH
Q 008692 422 EVRALVEGQFLSMRGHAERFGLPSPPR-RIIATGGAS-AN-QTILS------------CLASIYGCDIYTVQRPDSASLG 486 (557)
Q Consensus 422 l~rAvlEgia~~~r~~~~~l~~~~~~~-~i~~~GGga-~s-~~w~Q------------i~Advlg~pv~~~~~~e~~alG 486 (557)
.++-.++-++..+..+...+ .++ -+++.||++ +. +.+.+ |..-+-+.||++....+.+.+|
T Consensus 239 ~~~~~~~~lg~~i~nl~~~l----dpeggv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G 314 (316)
T TIGR00749 239 ALSLFCVIYGRFAGNLALNL----GTRGGVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLHDNPGLLG 314 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCcEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcCCCccccC
Confidence 33444444444444444444 233 689999996 22 44333 2233456899999988888888
Q ss_pred HH
Q 008692 487 AA 488 (557)
Q Consensus 487 AA 488 (557)
||
T Consensus 315 ~~ 316 (316)
T TIGR00749 315 AG 316 (316)
T ss_pred CC
Confidence 75
No 266
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=21.00 E-value=72 Score=34.69 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.4
Q ss_pred EEEEEEccCCceEEEEEc
Q 008692 11 LFLGFDSSTQSLKATVLD 28 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d 28 (557)
+.+|||||||.++.++=.
T Consensus 7 ~SVGIDIGTsTTqlvfSr 24 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSR 24 (475)
T ss_pred EEEEEeccCceEEEEEEE
Confidence 568999999999876543
No 267
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.78 E-value=2.6e+02 Score=28.64 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=19.9
Q ss_pred CCCE-EEEecCCcchhhHH----HHHHHHhC--CceEE
Q 008692 446 PPRR-IIATGGASANQTIL----SCLASIYG--CDIYT 476 (557)
Q Consensus 446 ~~~~-i~~~GGga~s~~w~----Qi~Advlg--~pv~~ 476 (557)
+++- |++=||||..++|+ .+.-.|+. .||..
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvis 112 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVIS 112 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEE
Confidence 4555 44458999999998 44445555 45554
No 268
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=20.75 E-value=84 Score=32.92 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=32.2
Q ss_pred CEEEEecCCcchhhHHHHHHHHh------CCceEEecCC---CchhHHHHHHHHhc
Q 008692 448 RRIIATGGASANQTILSCLASIY------GCDIYTVQRP---DSASLGAALRAAHG 494 (557)
Q Consensus 448 ~~i~~~GGga~s~~w~Qi~Advl------g~pv~~~~~~---e~~alGAA~lA~~a 494 (557)
++|+++||.|+-+-+.+-+.+-+ +.+|.+.... .++=+||+++|...
T Consensus 293 ~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~ 348 (373)
T smart00268 293 ENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLS 348 (373)
T ss_pred hCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCcc
Confidence 56999999999988887777666 4556664433 23445777776543
No 269
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=20.45 E-value=3.5e+02 Score=27.78 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=31.5
Q ss_pred CEEEEecCCc-------chhhHHHHHHH-------HhCCceEEecCCCchhHHHHHHHH
Q 008692 448 RRIIATGGAS-------ANQTILSCLAS-------IYGCDIYTVQRPDSASLGAALRAA 492 (557)
Q Consensus 448 ~~i~~~GGga-------~s~~w~Qi~Ad-------vlg~pv~~~~~~e~~alGAA~lA~ 492 (557)
.-|+++||.+ +...+++-+.| +=.+||++......+.+|+|..+.
T Consensus 260 GGVyiaGGI~pril~~l~~s~Fr~~FedKGr~sa~l~~IPV~vi~~~~~gL~Gaa~~~~ 318 (320)
T COG0837 260 GGVYIAGGIVPRILEALKASGFRARFEDKGRMSAYLADIPVYVILHPQPGLLGAAAALR 318 (320)
T ss_pred CcEEEcCCchHhHHHHHhcchHHHHhhhcCchHHHHhhCCEEEEecCCchHHHHHHHhc
Confidence 4699999986 22334443332 345799998888889999998764
No 270
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.30 E-value=2.4e+02 Score=28.57 Aligned_cols=42 Identities=17% Similarity=-0.002 Sum_probs=27.3
Q ss_pred CeEEEcCChhhhhhhccCC-----CCCCcEEEEecccceeccccCCCC
Q 008692 274 CLVVQWSGDNPNSLAGLTL-----STSGDLAISLGTSDTVFGITDDPE 316 (557)
Q Consensus 274 ~pV~~G~~D~~aa~~g~g~-----~~~g~~~~~~GTs~~~~~~~~~~~ 316 (557)
+||.+ .-|..|+++|-.. -.+..+++++||+---..+.+...
T Consensus 108 ~Pv~v-eNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~giv~~g~l 154 (314)
T COG1940 108 LPVFV-ENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGGIIVNGKL 154 (314)
T ss_pred CCEEE-ecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEEEEECCEE
Confidence 55554 4577777765332 234678999999877777776543
No 271
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=20.22 E-value=1.2e+02 Score=27.38 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=20.0
Q ss_pred cEEEEEEccCCceEEEEEcCCC
Q 008692 10 SLFLGFDSSTQSLKATVLDSNL 31 (557)
Q Consensus 10 ~~~lgIDiGTts~Ka~l~d~~G 31 (557)
+.+||||+||-.|=+++-|..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999999999999999887
No 272
>PRK13326 pantothenate kinase; Reviewed
Probab=20.07 E-value=3.4e+02 Score=27.18 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=20.4
Q ss_pred EEEEEEccCCceEEEEEcCCCCEEE
Q 008692 11 LFLGFDSSTQSLKATVLDSNLNIVA 35 (557)
Q Consensus 11 ~~lgIDiGTts~Ka~l~d~~G~~v~ 35 (557)
.+|.||+|.|++|..+||. ++++.
T Consensus 7 ~~L~IDiGNT~ik~glf~~-~~l~~ 30 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD-NKMQI 30 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC-CEEEE
Confidence 6799999999999999994 45654
Done!