BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008693
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
pdb|2CDQ|B Chain B, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase
Complexed With Lysine And S-Adenosylmethionine
Length = 510
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/483 (81%), Positives = 437/483 (90%), Gaps = 2/483 (0%)
Query: 63 VIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK 122
V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP E PVIVLSAMGK
Sbjct: 10 VLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGK 68
Query: 123 TTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKG 182
TTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I T+LEELEQLLKG
Sbjct: 69 TTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKG 128
Query: 183 IAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL 242
IAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IGFITTDDFTN DIL
Sbjct: 129 IAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDIL 188
Query: 243 EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302
EATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDLTATTIGKALGL+E
Sbjct: 189 EATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKE 248
Query: 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRV 362
IQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQVLHPQSMRPAREG+IPVRV
Sbjct: 249 IQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRV 308
Query: 363 KNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDL 422
KNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ GFLAKVFS FE+L
Sbjct: 309 KNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEEL 368
Query: 423 GISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN 482
GISVDVVATSEVS+SLTLDPSKLWSRELIQQELDHVVEELEKIA+VNLL+ R+IISLIGN
Sbjct: 369 GISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN 428
Query: 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES-DL 541
VQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE CV+ALH++FFES DL
Sbjct: 429 VQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFESGDL 488
Query: 542 ANL 544
+ L
Sbjct: 489 SEL 491
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 280 bits (717), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/484 (35%), Positives = 282/484 (58%), Gaps = 41/484 (8%)
Query: 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCG 138
+T VMKFGG+S+ S ER+R VA+++ E +V+ SAM + TN L+ ++A+
Sbjct: 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD-- 58
Query: 139 VTNISCI-DELSFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELT 190
V +I+ + D + F+++ H++ ++E + II + +EELE++L G+A L ELT
Sbjct: 59 VRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELT 118
Query: 191 PRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYPA 248
P+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A + LE
Sbjct: 119 PKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE----- 173
Query: 249 VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308
V +RL + + IP+VTGF+G ITTLGRGGSD +A IG L I++W D
Sbjct: 174 VKERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTD 231
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
V GV T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IP+ VKN++ P
Sbjct: 232 VSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEP 291
Query: 369 NAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
+ GTLI +MS +++ +I +NV +++I M+G G A++F + ++V +
Sbjct: 292 ESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVIL 351
Query: 429 VA--TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI---------- 476
++ +SE ++SL + S E + + L + E + L + I
Sbjct: 352 ISQGSSETNISLVV------SEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVC 405
Query: 477 -ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534
IS++G R + I K F + SG N++MI+QG+S+VNIS ++++ + CVR LHE
Sbjct: 406 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHE 465
Query: 535 TFFE 538
F E
Sbjct: 466 KFIE 469
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 175/484 (36%), Positives = 282/484 (58%), Gaps = 43/484 (8%)
Query: 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCGV 139
T VMKFGG+S+ S ER+R VA+++ E +V+ SAM + TN L+ ++A+ V
Sbjct: 1 TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD--V 58
Query: 140 TNISCI-DELSFVKDLHHRTVDELGID--------RSIIATHLEELEQLLKGIAMLKELT 190
+I+ + D + F+++ H++ ++E I + II + +EELE++L G+A L ELT
Sbjct: 59 RDIAKVGDFIKFIREKHYKAIEE-AIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELT 117
Query: 191 PRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYPA 248
P+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A + LE
Sbjct: 118 PKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE----- 172
Query: 249 VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308
V +RL + + IP+VTGF+G ITTLGRGGSD +A IG L I++W D
Sbjct: 173 VKERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTD 230
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
V GV T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IP+ VKN++ P
Sbjct: 231 VSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEP 290
Query: 369 NAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
+ GTLI +MS +++ +I +NV +++I M+G G A++F + ++V +
Sbjct: 291 ESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVIL 350
Query: 429 VA--TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI---------- 476
++ +SE ++SL + S E + + L + E + L + I
Sbjct: 351 ISQGSSETNISLVV------SEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVC 404
Query: 477 -ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534
IS++G R + I K F + SG N++MI+QG+S+VNIS ++++ + CVR LHE
Sbjct: 405 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHE 464
Query: 535 TFFE 538
F E
Sbjct: 465 KFIE 468
>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Lysine And Aspartate (T-State)
pdb|2J0X|B Chain B, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Lysine And Aspartate (T-State)
pdb|2J0W|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex
With Aspartate And Adp (R-State)
Length = 449
Score = 204 bits (519), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 252/468 (53%), Gaps = 37/468 (7%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ A++ G+
Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYLV 198
++L ++++ ++ L I EE+E+LL+ I +L E +P D LV
Sbjct: 60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD-----ILEATYPAVAKRL 253
S GE MST +F L + V+A+ +D + T D F A+ + E + RL
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRL 174
Query: 254 HGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
+ + I GF+G + TTLGRGGSD TA + +AL + +W DV G+
Sbjct: 175 NEGLV------ITQGFIGSENKG-RTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227
Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
T DP + AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A GT
Sbjct: 228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287
Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE 433
L+ ++ + + ++ L+RN T+L + S ML GFLA+VF ISVD++ TSE
Sbjct: 288 LV-CNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSE 346
Query: 434 VSLSLTL--DPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLIL 490
VS++LTL S L+ Q L + EL + V + + ++++LIGN + ++ +
Sbjct: 347 VSVALTLDTTGSTSTGDTLLTQSL---LMELSALCRVEVEEGLALVALIGNDLSKACGVG 403
Query: 491 EKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
++ F VL N++MI GAS N+ +V ++AEQ V+ LH FE
Sbjct: 404 KEVFGVL--EPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|B Chain B, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|C Chain C, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|D Chain D, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|E Chain E, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|F Chain F, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|G Chain G, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|H Chain H, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|I Chain I, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|J Chain J, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|K Chain K, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|L Chain L, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
Length = 446
Score = 174 bits (442), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 132/464 (28%), Positives = 226/464 (48%), Gaps = 39/464 (8%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGV---T 140
V KFGGSSLA + + ++V +I S N R I+ SA GK TNK + C
Sbjct: 6 VTKFGGSSLADSNQFKKVKGIIDSDAN-RKYIIPSAPGKRTNKDYKITDLLYLCNAHVKN 64
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
I D + + V EL ID I A +LE++++ ++ A S DY S
Sbjct: 65 GIPFDDVFKLISQRYTEIVSELNIDXDI-AYYLEKVKKNIENGA--------SSDYAASR 115
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE ++ I A YLN A DA ++ F D + + +Y + ++ +
Sbjct: 116 GEYLNGVILAKYLN-----AEFIDAAEVIFF---DKSGCFDEKKSYEKIKEK-----VLS 162
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
++ GF G ++ + T RGGSD+T + I + + W DV G L DP I
Sbjct: 163 CNKAVIPGFYGSSFNG-DVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLXADPRIV 221
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI--RRS 378
+ K + +++ E EL+Y GA VLH +++ P ++ IP+ +KN+ P+ PGTLI
Sbjct: 222 ENPKTISKISYKELRELSYXGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTH 281
Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438
++++ +T I K+N T++ I + + GF K+ S E G+S + + S+SL
Sbjct: 282 KEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEXYGVSFEHXPSGVDSVSL 341
Query: 439 TLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNV----QRSSLILEKAF 494
++ KL + D ++EE++K + ++ +L+ V ++ I K F
Sbjct: 342 VIEDCKLDGK------CDKIIEEIKKQCNPDSIEIHPNXALVATVGTGXAKTKGIANKIF 395
Query: 495 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
L + VN++ I QG+S++N+ + V + E+ V++++ F E
Sbjct: 396 TALSKENVNIRXIDQGSSEINVIVGVETVDFEKAVKSIYNAFNE 439
>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|C Chain C, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|E Chain E, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|G Chain G, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|I Chain I, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|K Chain K, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|M Chain M, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|O Chain O, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 421
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 229/469 (48%), Gaps = 84/469 (17%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V K+GGSSL SAER+R VAE I++ V+V SAMG TT+
Sbjct: 5 VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTD---------------- 48
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP-RSRDYLVSF 200
+LL+ A + + P R D L++
Sbjct: 49 ------------------------------------ELLELAAAVNPVPPAREMDMLLTA 72
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE +S + A + +G +A+ + G +TT+ NA I++ T V + L +
Sbjct: 73 GERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALD-----E 127
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
I IV GF G T +TTLGRGGSD TA + AL +++ DVDGV T DP I
Sbjct: 128 GKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIV 187
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380
P+A+ + L+F+E ELA G+++L +S+ AR ++P+RV++SY+ N PGTLI S +
Sbjct: 188 PNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAGSME 246
Query: 381 ---MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEV 434
+ +AVLT + ++ VT+L I + G AKVF D I++D+V +
Sbjct: 247 DIPVEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMVLQNVF 301
Query: 435 SLSLTLDPSKLWSRELIQQELDHVVEELEKIAI----VNLLQHRSI--ISLIGNVQRSSL 488
S+ D + + + + +E L+K+ + N+L + +SL+G +S
Sbjct: 302 SVE---DGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHP 358
Query: 489 ILEKAF-RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
+ F LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 359 GVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 405
>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|E Chain E, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|G Chain G, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|I Chain I, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|K Chain K, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|M Chain M, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|O Chain O, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 421
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 229/469 (48%), Gaps = 84/469 (17%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V K+GGSSL SAER+R VAE I++ V+V SAMG TT+
Sbjct: 5 VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTD---------------- 48
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP-RSRDYLVSF 200
+LL+ A + + P R D L++
Sbjct: 49 ------------------------------------ELLELAAAVNPVPPAREMDMLLTA 72
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE +S + A + +G +A+ + G +TT+ NA I++ T V + L +
Sbjct: 73 GERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALD-----E 127
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
I IV GF G T +TTLGRGGSD TA + AL +++ DVDGV T DP I
Sbjct: 128 GKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIV 187
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380
P+A+ + L+F+E ELA G+++L +S+ AR ++P+RV++SY+ N PGTLI S +
Sbjct: 188 PNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAGSME 246
Query: 381 ---MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEV 434
+ +AVLT + ++ VT+L I + G AKVF D I++D+V
Sbjct: 247 DIPVEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMVLQ--- 298
Query: 435 SLSLTLDPSKLWSRELIQQELDHVVEELEKIAI----VNLLQHRSI--ISLIGNVQRSSL 488
++S D + + + + +E L+K+ + N+L + +SL+G +S
Sbjct: 299 NVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHP 358
Query: 489 ILEKAF-RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
+ F LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 359 GVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 405
>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis
pdb|3L76|B Chain B, Crystal Structure Of Aspartate Kinase From Synechocystis
Length = 600
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 127/485 (26%), Positives = 213/485 (43%), Gaps = 105/485 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ + ER++ VA+ I V+V+SAMGK+T+ L+
Sbjct: 5 VQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLV------------- 51
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+L Q + +E+ D L+S G
Sbjct: 52 ---------------------------------DLAQQISPNPCRREM-----DMLLSTG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + + L +I A +G +T + + A ILE + L +
Sbjct: 74 EQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVV-- 131
Query: 262 AIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
+V GF G + ITTLGRGGSD +A + AL +++ DV G+LT DP +
Sbjct: 132 ---VVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLV 188
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI----- 375
P A+ + +T DE ELA GA+VLHP+++ AR IP+ V++S++ + PGT +
Sbjct: 189 PEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKVVAPPV 247
Query: 376 -RRS---RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431
RS +++KAV ++ + + R+ + G +K+F + +D++
Sbjct: 248 QNRSLVGLEIAKAVDG---VEYDADQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQ 304
Query: 432 S-------EVSLSLTLD------------PSKLWSRELIQQELDHVVEE-LEKIAIVNLL 471
S +++ ++ D L S QE + +VE+ + KIAI
Sbjct: 305 SIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKGIAKIAIAGA- 363
Query: 472 QHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 531
G + R I K F+ L GVN++MIS S+V +S +++ +A++ + A
Sbjct: 364 ---------GMIGRPG-IAAKMFKTLADVGVNIEMIS--TSEVKVSCVIDQRDADRAIAA 411
Query: 532 LHETF 536
L F
Sbjct: 412 LSNAF 416
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
+IV+ + + + IV + M+G G A F+ I+++++ATSE+ +S
Sbjct: 520 AIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKIS 569
>pdb|3MAH|A Chain A, A Putative C-Terminal Regulatory Domain Of Aspartate
Kinase From Porphyromonas Gingivalis W83
Length = 157
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
S D K + ++ K +T++ + S+ L + F K+F FE VD VATSEV +S
Sbjct: 1 SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFXRKLFEIFEFYQEPVDXVATSEVGVS 60
Query: 438 LTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVL 497
LT+D K L +V L I V + + II ++G+ + ++ E R++
Sbjct: 61 LTIDNDK---------NLPDIVRALSDIGDVTVDKDXVIICIVGDXEWDNVGFEA--RII 109
Query: 498 RR-SGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539
GV V+ IS G S N+S++V ++ ++ + AL F S
Sbjct: 110 NALKGVPVRXISYGGSNYNVSVLVKAEDKKKALIALSNKLFNS 152
>pdb|4GO5|X Chain X, The Regulatory Subunit Of Aspartate Kinase From
Mycobacterium Tuberculosis
pdb|4GO7|X Chain X, The Regulatory Subunit Of Aspartate Kinase In Complex With
Threonine From Mycobacterium Tuberculosis
Length = 200
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--AT 431
L+ R M +LT + R+ + IV + G+ AKVF D +++D+V
Sbjct: 14 LVPRGNHMEDPILTGVAHDRSEAKVTIVGLPDI--PGYAAKVFRAVADADVNIDMVLQNV 71
Query: 432 SEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLL--QHRSIISLIGNVQRSSLI 489
S+V T D + SR++ ++ + +I LL H +SLIG RS
Sbjct: 72 SKVEDGKT-DITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPG 130
Query: 490 LEKAF-RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
+ F L GVN+++IS S++ IS++ D E ++ V ALHE F
Sbjct: 131 VTATFCEALAAVGVNIELIST--SEIRISVLCRDTELDKAVVALHEAF 176
>pdb|3S1T|A Chain A, Structure Of The Regulatory Domain Of Aspartokinase
(Rv3709c; Ak-Beta) In Complex With Threonine From
Mycobacterium Tuberculosis
pdb|3S1T|B Chain B, Structure Of The Regulatory Domain Of Aspartokinase
(Rv3709c; Ak-Beta) In Complex With Threonine From
Mycobacterium Tuberculosis
Length = 181
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 410 GFLAKVFSTFEDLGISVDVV--ATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI 467
G+ AKVF D +++D+V S+V T D + SR++ ++ + +I
Sbjct: 29 GYAAKVFRAVADADVNIDMVLQNVSKVEDGKT-DITFTCSRDVGPAAVEKLDSLRNEIGF 87
Query: 468 VNLL--QHRSIISLIGNVQRSSLILEKAF-RVLRRSGVNVQMISQGASKVNISLIVNDDE 524
LL H +SLIG RS + F L GVN+++IS S++ IS++ D E
Sbjct: 88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLCRDTE 145
Query: 525 AEQCVRALHETF 536
++ V ALHE F
Sbjct: 146 LDKAVVALHEAF 157
>pdb|2DT9|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Flavus
pdb|2DT9|B Chain B, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Flavus
pdb|2ZHO|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|B Chain B, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|C Chain C, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|D Chain D, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|E Chain E, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
pdb|2ZHO|F Chain F, Crystal Structure Of The Regulatory Subunit Of Aspartate
Kinase From Thermus Thermophilus (Ligand Free Form)
Length = 167
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 87/165 (52%), Gaps = 18/165 (10%)
Query: 380 DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT-------S 432
+M KAV T + L + + ++ + Q G AKVF + GI+VD++ S
Sbjct: 2 EMDKAV-TGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPS 58
Query: 433 EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIG-NVQRSSLILE 491
++ T+ K +++E ++ L+ V+ E+ AI L + +S++G + + +
Sbjct: 59 RQQMAFTV--KKDFAQEALEA-LEPVLAEIGGEAI--LRPDIAKVSIVGVGLASTPEVPA 113
Query: 492 KAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
K F+ + +G N++MI+ S+V IS+I+ + AE +RA+H+ F
Sbjct: 114 KMFQAVASTGANIEMIA--TSEVRISVIIPAEYAEAALRAVHQAF 156
>pdb|3AB4|B Chain B, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|D Chain D, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|F Chain F, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|H Chain H, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|J Chain J, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|L Chain L, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|N Chain N, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|P Chain P, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 178
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 381 MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
M +AVLT + ++ VT+L I + G AKVF D I++D+V + S+
Sbjct: 1 MEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMVLQNVFSVE 55
Query: 438 LTLDPSKLWSRELIQQELDHVVEELEKIAI----VNLLQHRSI--ISLIGNVQRSSLILE 491
D + + + + +E L+K+ + N+L + +SL+G +S +
Sbjct: 56 ---DGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVT 112
Query: 492 KAF-RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
F LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 113 AEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 156
>pdb|2DTJ|A Chain A, Crystal Structure Of Regulatory Subunit Of Aspartate
Kinase From Corynebacterium Glutamicum
pdb|2DTJ|B Chain B, Crystal Structure Of Regulatory Subunit Of Aspartate
Kinase From Corynebacterium Glutamicum
pdb|3AAW|B Chain B, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|D Chain D, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|B Chain B, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|D Chain D, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|F Chain F, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|H Chain H, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|J Chain J, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|L Chain L, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|N Chain N, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|P Chain P, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 178
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 381 MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
M +AVLT + ++ VT+L I + G AKVF D I++D+V + S+
Sbjct: 1 MEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMVLQNVSSVE 55
Query: 438 LTLDPSKLWSRELIQQELDHVVEELEKIAI----VNLLQHRSI--ISLIGNVQRSSLILE 491
D + + + + +E L+K+ + N+L + +SL+G +S +
Sbjct: 56 ---DGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVT 112
Query: 492 KAF-RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
F LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 113 AEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 156
>pdb|2RE1|A Chain A, Crystal Structure Of Aspartokinase Alpha And Beta Subunits
pdb|2RE1|B Chain B, Crystal Structure Of Aspartokinase Alpha And Beta Subunits
Length = 167
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 380 DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLT 439
+ +A +T I +N +++ + + G ++ D I VD + V T
Sbjct: 10 NXERAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDXI-IQNVGSEGT 66
Query: 440 LDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI--ISLIGNVQRSSL-ILEKAFRV 496
D S R +Q L+ + E + I ++ ++ +S +G RS + + K FR
Sbjct: 67 TDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGXRSHVGVAAKIFRT 126
Query: 497 LRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
L G+N+Q IS S++ +S+++++ E R LH+ F
Sbjct: 127 LAEEGINIQXIS--TSEIKVSVLIDEKYXELATRVLHKAF 164
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 286 GSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
G+ L A IG L L+ +V DGV DP H A LT+D E+ G +V+
Sbjct: 148 GAALRAIEIGADLLLKATKV----DGVYDKDPKKHSDAVRYDSLTYD---EVIMQGLEVM 200
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ AR+ D+P+R+ + + PG L+R
Sbjct: 201 DTAAFALARDSDLPLRI---FGMSEPGVLLR 228
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
VDGV T DP P A LT+ E E +V+ + AR+ +P+RV +N
Sbjct: 167 VDGVFTADPAKDPTATMYEQLTYSEVLEKEL---KVMDLAAFTLARDHKLPIRV---FNM 220
Query: 369 NAPGTLIR 376
N PG L R
Sbjct: 221 NKPGALRR 228
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
VDGV T DP P A LT+ E E +V+ + AR+ +P+RV +N
Sbjct: 167 VDGVFTADPAKDPTATMYEQLTYSEVLEKEL---KVMDLAAFTLARDHKLPIRV---FNM 220
Query: 369 NAPGTLIR 376
N PG L R
Sbjct: 221 NKPGALRR 228
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
VDGV T DP P A LT+ E E +V + AR+ +P+RV +N
Sbjct: 167 VDGVFTADPAKDPTATXYEQLTYSEVLEKEL---KVXDLAAFTLARDHKLPIRV---FNX 220
Query: 369 NAPGTLIR 376
N PG L R
Sbjct: 221 NKPGALRR 228
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
VDGV CDP +P AK L++ E + +V+ + AR+ +P+RV N P
Sbjct: 166 VDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL---KVMDLSAFTLARDHGMPIRVFNMGKP 222
Query: 369 NA 370
A
Sbjct: 223 GA 224
>pdb|2XME|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|G Chain G, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|H Chain H, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|I Chain I, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|J Chain J, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|K Chain K, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|L Chain L, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
Length = 232
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 176 LEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235
+E+ ++G ++ + PR V GE R+ + KIG R++D D GF DD
Sbjct: 125 IEKAVRGEGVIADREPR----FVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDD 180
Query: 236 --FTNADIL 242
F +A+ L
Sbjct: 181 SIFEHAEKL 189
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
VDGV DP I+P+A+ ++TF+ A +V+ ++ +E +I + V N P
Sbjct: 182 VDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKP 238
Query: 369 NA 370
NA
Sbjct: 239 NA 240
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 214 NKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273
+K+ V ++ DIG++ N +IL A + D+I +A P+ G G +
Sbjct: 125 SKLIVAEKETKHGDIGYVGKVKKVNPEILHAL-------IENDYIPVIA-PVGIGEDGHS 176
Query: 274 WRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333
+ A D A I K+L +++ + DVDGVL K + LT DE
Sbjct: 177 YNINA---------DTAAAEIAKSLMAEKLILLTDVDGVLK-------DGKLISTLTPDE 220
Query: 334 AAEL 337
A EL
Sbjct: 221 AEEL 224
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEA 334
+VDGV T DP P A +TFDEA
Sbjct: 164 NVDGVYTADPKKDPSATRYETITFDEA 190
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGG-------SDLTATTIGKALGLQEIQVWKDVDGVLT 314
A P+V +AW+ + + G +D A + + L + V +VDGV T
Sbjct: 90 AYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYT 149
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQ 343
DP P AK + + +E E+ G +
Sbjct: 150 ADPKKDPTAKKIKKMKPEELLEIVGKGIE 178
>pdb|2FN6|A Chain A, Helicobacter Pylori Psec, Aminotransferase Involved In The
Biosynthesis Of Pseudoaminic Acid
pdb|2FN6|B Chain B, Helicobacter Pylori Psec, Aminotransferase Involved In The
Biosynthesis Of Pseudoaminic Acid
pdb|2FNI|A Chain A, Psec Aminotransferase Involved In Pseudoaminic Acid
Biosynthesis
pdb|2FNI|B Chain B, Psec Aminotransferase Involved In Pseudoaminic Acid
Biosynthesis
pdb|2FNU|A Chain A, Psec Aminotransferase With External Aldimine
pdb|2FNU|B Chain B, Psec Aminotransferase With External Aldimine
Length = 375
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 57 EGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIV 116
+G R + E E LGV + + F ++ A R +E F +R I+
Sbjct: 30 QGKRSLLFEEALCEFLGVKHA-------LVFNSATSALLTLYRNFSE----FSADRNEII 78
Query: 117 LSAMG--KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLE 174
+ + T N LL +G V G+ N IDEL+ K ++ RT + +D + + +E
Sbjct: 79 TTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDYAGKSVEVE 138
Query: 175 ELEQLLK 181
+++L K
Sbjct: 139 SVQKLCK 145
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGG-------SDLTATTIGKALGLQEIQVWKDVDGVLT 314
A P+V +AW+ + + G +D A + + L + V +VDGV T
Sbjct: 107 AYPVVVEDFWEAWKAVQLKKIPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYT 166
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQ 343
DP P AK + + +E E+ G +
Sbjct: 167 ADPKKDPTAKKIKKMKPEELLEIVGKGIE 195
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
+ VDGV T DP + AK L +++ QV+ ++ AR+ ++P V +
Sbjct: 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHV---F 223
Query: 367 NPNAPGTLIR 376
N + PG + R
Sbjct: 224 NFDEPGVMRR 233
>pdb|3HX6|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
pdb|3HX6|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pily1
C-Terminal Domain
Length = 570
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHG--- 255
+F E TR Y +G FD T F + + E + A+ G
Sbjct: 76 TFAEAQKTRAPRVY---VGANDGMLHGFDTDGNETFAFIPSAVFEKMHKLTARGYQGGAH 132
Query: 256 DWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
+ D + + F G AW T I +L GG L A
Sbjct: 133 QFYVDGSPVVADAFFGGAWHTVLIGSLRAGGKGLFA 168
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 279 ITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
+ G G + AT + KALG + ++++ D+DG PN HP
Sbjct: 198 VVDAGNGVAGPLATRLFKALGCELVELFTDIDGNF---PNHHP 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,839,937
Number of Sequences: 62578
Number of extensions: 569994
Number of successful extensions: 1655
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1586
Number of HSP's gapped (non-prelim): 40
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)