Query 008693
Match_columns 557
No_of_seqs 332 out of 2195
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cdq_A Aspartokinase; aspartat 100.0 1.9E-95 6E-100 795.5 47.5 495 59-555 6-502 (510)
2 3tvi_A Aspartokinase; structur 100.0 2.2E-86 7.5E-91 713.3 40.2 426 81-540 3-441 (446)
3 3c1m_A Probable aspartokinase; 100.0 1.2E-84 4.1E-89 708.0 50.3 446 81-539 1-470 (473)
4 2j0w_A Lysine-sensitive aspart 100.0 3.5E-86 1.2E-90 714.2 35.3 443 80-538 2-449 (449)
5 3l76_A Aspartokinase; alloster 100.0 1E-72 3.6E-77 628.9 38.1 395 80-539 1-419 (600)
6 3ab4_A Aspartokinase; aspartat 100.0 7.6E-72 2.6E-76 599.7 42.1 394 80-539 1-408 (421)
7 2jjx_A Uridylate kinase, UMP k 100.0 6.4E-30 2.2E-34 256.7 20.5 218 78-378 10-247 (255)
8 2j4j_A Uridylate kinase; trans 100.0 2.4E-30 8.2E-35 255.1 17.0 205 81-377 1-225 (226)
9 1ybd_A Uridylate kinase; alpha 100.0 7.4E-30 2.5E-34 253.5 18.7 214 80-376 7-238 (239)
10 1gs5_A Acetylglutamate kinase; 100.0 1.9E-29 6.6E-34 253.5 20.9 234 80-376 2-257 (258)
11 2a1f_A Uridylate kinase; PYRH, 100.0 2.6E-29 8.9E-34 251.0 20.6 217 79-378 7-241 (247)
12 4a7w_A Uridylate kinase; trans 100.0 6.8E-29 2.3E-33 247.0 20.2 214 80-375 7-239 (240)
13 2ap9_A NAG kinase, acetylgluta 100.0 9.8E-29 3.4E-33 253.6 20.4 240 80-379 25-292 (299)
14 1z9d_A Uridylate kinase, UK, U 100.0 2.3E-28 7.9E-33 244.9 21.3 218 80-379 7-242 (252)
15 3ek6_A Uridylate kinase; UMPK 100.0 3.6E-28 1.2E-32 242.2 18.2 215 80-377 9-241 (243)
16 3nwy_A Uridylate kinase; allos 100.0 1.2E-27 4E-32 242.5 17.6 215 79-376 49-280 (281)
17 2j5v_A Glutamate 5-kinase; pro 99.9 1.4E-27 4.7E-32 251.1 16.2 228 80-379 4-259 (367)
18 2brx_A Uridylate kinase; UMP k 99.9 2.7E-27 9.4E-32 236.0 16.1 206 80-376 19-243 (244)
19 2ogx_A Molybdenum storage prot 99.9 3E-27 1E-31 239.8 16.5 216 82-378 41-272 (276)
20 2ij9_A Uridylate kinase; struc 99.9 6.2E-27 2.1E-31 229.5 17.8 202 81-376 1-219 (219)
21 2va1_A Uridylate kinase; UMPK, 99.9 1.9E-26 6.7E-31 231.4 19.9 215 80-376 24-255 (256)
22 2rd5_A Acetylglutamate kinase- 99.9 1.3E-26 4.4E-31 237.7 15.5 237 80-376 36-297 (298)
23 2bty_A Acetylglutamate kinase; 99.9 1.8E-26 6.1E-31 234.8 15.6 235 80-378 21-280 (282)
24 4go7_X Aspartokinase; transfer 99.9 6.8E-26 2.3E-30 218.4 16.8 166 370-543 10-183 (200)
25 3mah_A Aspartokinase; aspartat 99.9 3.7E-26 1.3E-30 212.9 13.6 148 381-539 4-152 (157)
26 2egx_A Putative acetylglutamat 99.9 9.9E-26 3.4E-30 227.9 17.7 236 82-376 1-269 (269)
27 2ogx_B Molybdenum storage prot 99.9 3.1E-25 1E-29 224.4 20.1 214 82-377 38-269 (270)
28 2ako_A Glutamate 5-kinase; str 99.9 3.4E-26 1.2E-30 228.8 13.0 215 81-368 2-232 (251)
29 2v5h_A Acetylglutamate kinase; 99.9 1.6E-25 5.3E-30 231.8 15.7 238 80-378 49-311 (321)
30 3ll9_A Isopentenyl phosphate k 99.9 5E-25 1.7E-29 222.7 19.1 159 203-376 89-266 (269)
31 3d40_A FOMA protein; fosfomyci 99.9 9.4E-26 3.2E-30 230.0 13.6 222 81-376 24-266 (286)
32 2buf_A Acetylglutamate kinase; 99.9 2.2E-24 7.7E-29 221.3 19.2 235 80-378 26-297 (300)
33 3l86_A Acetylglutamate kinase; 99.9 2.8E-24 9.5E-29 217.7 15.2 227 81-377 37-278 (279)
34 1e19_A Carbamate kinase-like c 99.9 5.9E-24 2E-28 219.4 15.5 237 81-377 3-314 (314)
35 3s1t_A Aspartokinase; ACT doma 99.9 2.3E-23 8E-28 198.4 17.2 152 382-541 3-162 (181)
36 2dt9_A Aspartokinase; protein- 99.9 5.2E-23 1.8E-27 193.5 16.6 148 384-540 5-160 (167)
37 3ll5_A Gamma-glutamyl kinase r 99.9 5E-23 1.7E-27 205.8 16.6 217 79-368 2-232 (249)
38 2re1_A Aspartokinase, alpha an 99.9 5.7E-22 2E-26 186.4 14.0 149 382-538 12-166 (167)
39 2dtj_A Aspartokinase; protein- 99.9 6.1E-22 2.1E-26 188.1 14.2 149 383-539 3-159 (178)
40 3d2m_A Putative acetylglutamat 99.8 6.9E-21 2.4E-25 206.0 16.3 234 80-378 43-304 (456)
41 3zzh_A Acetylglutamate kinase; 99.8 3.2E-21 1.1E-25 197.5 11.2 233 79-379 47-303 (307)
42 2e9y_A Carbamate kinase; trans 99.8 2E-20 6.7E-25 193.2 14.4 234 80-377 4-315 (316)
43 2we5_A Carbamate kinase 1; arg 99.8 6.8E-20 2.3E-24 188.7 17.1 115 257-376 178-309 (310)
44 4ab7_A Protein Arg5,6, mitocho 99.8 2.9E-20 1E-24 199.7 13.4 232 79-378 47-302 (464)
45 3k4o_A Isopentenyl phosphate k 99.8 7.8E-20 2.7E-24 184.3 14.0 151 203-378 98-265 (266)
46 3s6g_A N-acetylglutamate kinas 99.8 5E-20 1.7E-24 198.2 12.8 235 79-378 57-311 (460)
47 3l76_A Aspartokinase; alloster 99.8 9.5E-20 3.2E-24 202.9 14.8 148 382-540 431-592 (600)
48 3s6k_A Acetylglutamate kinase; 99.7 1.1E-19 3.7E-24 195.9 -2.4 235 78-378 59-314 (467)
49 4axs_A Carbamate kinase; oxido 99.6 1.1E-14 3.9E-19 150.4 16.1 116 256-376 198-331 (332)
50 3kzf_A Carbamate kinase; argin 99.6 1.6E-14 5.6E-19 147.2 14.8 122 254-377 181-316 (317)
51 2f06_A Conserved hypothetical 99.1 1.2E-09 4.1E-14 99.3 15.2 114 405-536 13-132 (144)
52 2dtj_A Aspartokinase; protein- 98.7 1E-07 3.4E-12 90.0 12.2 101 345-445 29-145 (178)
53 3c1m_A Probable aspartokinase; 98.5 2.6E-07 8.8E-12 100.2 10.0 110 412-536 269-381 (473)
54 4go7_X Aspartokinase; transfer 98.4 5.9E-07 2E-11 86.2 8.3 60 386-445 106-165 (200)
55 2dt9_A Aspartokinase; protein- 98.3 9.3E-07 3.2E-11 82.3 6.6 69 465-534 7-80 (167)
56 2re1_A Aspartokinase, alpha an 98.3 2.6E-06 8.9E-11 79.3 9.6 99 346-445 40-153 (167)
57 3s1t_A Aspartokinase; ACT doma 98.2 3.8E-06 1.3E-10 79.4 8.1 59 387-445 88-146 (181)
58 3mah_A Aspartokinase; aspartat 98.1 2.9E-06 9.9E-11 78.2 5.7 68 465-534 9-78 (157)
59 3tvi_A Aspartokinase; structur 97.7 9.4E-05 3.2E-09 79.3 9.1 101 343-445 312-426 (446)
60 3ab4_A Aspartokinase; aspartat 97.6 0.00012 4E-09 78.1 8.0 98 347-445 280-394 (421)
61 2cdq_A Aspartokinase; aspartat 97.2 0.00037 1.3E-08 75.9 6.6 101 342-445 354-471 (510)
62 1u8s_A Glycine cleavage system 96.8 0.055 1.9E-06 50.7 17.2 110 395-510 6-127 (192)
63 2j0w_A Lysine-sensitive aspart 96.7 0.0013 4.6E-08 70.5 5.3 58 386-445 377-436 (449)
64 2nyi_A Unknown protein; protei 95.4 0.068 2.3E-06 50.5 9.8 107 395-510 5-127 (195)
65 2f06_A Conserved hypothetical 94.5 0.076 2.6E-06 47.3 7.2 46 399-444 73-120 (144)
66 1zhv_A Hypothetical protein AT 94.2 0.1 3.5E-06 46.5 7.1 90 427-538 34-124 (134)
67 1zvp_A Hypothetical protein VC 94.0 0.14 4.9E-06 45.5 7.7 85 428-533 43-128 (133)
68 3p96_A Phosphoserine phosphata 90.0 5.5 0.00019 41.3 15.4 111 395-509 12-135 (415)
69 1zhv_A Hypothetical protein AT 78.0 4.6 0.00016 35.7 6.6 55 389-444 56-110 (134)
70 1zvp_A Hypothetical protein VC 76.7 5.9 0.0002 35.0 6.9 54 390-444 66-119 (133)
71 2ko1_A CTR148A, GTP pyrophosph 76.2 7.1 0.00024 30.6 6.9 54 406-466 13-70 (88)
72 1zpv_A ACT domain protein; str 73.7 14 0.00046 29.3 8.0 57 475-533 6-67 (91)
73 1zpv_A ACT domain protein; str 73.4 16 0.00054 28.9 8.4 33 396-431 6-38 (91)
74 2f1f_A Acetolactate synthase i 72.9 40 0.0014 30.6 11.8 91 406-508 11-117 (164)
75 2f1f_A Acetolactate synthase i 72.6 5.6 0.00019 36.4 5.9 52 484-537 11-66 (164)
76 2pc6_A Probable acetolactate s 71.2 5.1 0.00017 36.7 5.3 52 484-537 12-67 (165)
77 2fgc_A Acetolactate synthase, 71.1 60 0.0021 30.3 12.7 90 406-508 37-144 (193)
78 1u8s_A Glycine cleavage system 70.4 10 0.00035 34.9 7.4 48 474-523 6-55 (192)
79 2fgc_A Acetolactate synthase, 70.3 5 0.00017 37.7 5.1 54 483-538 36-93 (193)
80 2pc6_A Probable acetolactate s 68.1 42 0.0014 30.5 10.8 91 406-508 12-118 (165)
81 3kbq_A Protein TA0487; structu 64.0 19 0.00063 33.1 7.6 72 204-305 23-94 (172)
82 2nyi_A Unknown protein; protei 63.3 23 0.0008 32.7 8.4 35 394-431 92-126 (195)
83 2ko1_A CTR148A, GTP pyrophosph 62.6 21 0.00073 27.7 6.9 42 484-525 13-56 (88)
84 1y7p_A Hypothetical protein AF 54.1 17 0.00058 34.8 5.5 112 406-532 12-140 (223)
85 1mkz_A Molybdenum cofactor bio 49.0 39 0.0013 30.6 7.1 69 203-299 27-96 (172)
86 2qmx_A Prephenate dehydratase; 46.9 1.6E+02 0.0055 29.0 11.7 112 321-442 120-249 (283)
87 1y5e_A Molybdenum cofactor bio 42.8 56 0.0019 29.4 7.1 67 204-299 31-99 (169)
88 2is8_A Molybdopterin biosynthe 40.1 46 0.0016 29.8 6.1 66 205-299 22-89 (164)
89 3n0v_A Formyltetrahydrofolate 39.0 2.4E+02 0.0082 27.7 11.6 34 396-432 9-42 (286)
90 2pjk_A 178AA long hypothetical 38.0 74 0.0025 29.0 7.1 67 204-299 40-108 (178)
91 3p96_A Phosphoserine phosphata 37.3 57 0.002 33.4 7.0 36 474-511 12-47 (415)
92 2fts_A Gephyrin; gephyrin, neu 36.8 64 0.0022 33.7 7.3 73 205-307 209-281 (419)
93 3obi_A Formyltetrahydrofolate 36.4 3.2E+02 0.011 26.8 12.4 64 396-463 7-78 (288)
94 3o1l_A Formyltetrahydrofolate 35.9 3.3E+02 0.011 26.9 12.6 34 396-432 23-56 (302)
95 3o1l_A Formyltetrahydrofolate 35.5 58 0.002 32.5 6.4 34 475-510 23-56 (302)
96 3rfq_A Pterin-4-alpha-carbinol 35.0 76 0.0026 29.2 6.7 68 204-299 49-116 (185)
97 3obi_A Formyltetrahydrofolate 34.2 49 0.0017 32.8 5.6 33 475-509 7-39 (288)
98 3n0v_A Formyltetrahydrofolate 33.3 90 0.0031 30.8 7.4 34 475-510 9-42 (286)
99 2g2c_A Putative molybdenum cof 32.6 64 0.0022 28.9 5.7 67 204-299 25-96 (167)
100 3pzy_A MOG; ssgcid, seattle st 32.5 67 0.0023 28.8 5.8 66 205-299 28-93 (164)
101 1y7p_A Hypothetical protein AF 31.4 72 0.0024 30.4 5.9 51 483-533 11-68 (223)
102 3lou_A Formyltetrahydrofolate 31.1 3.9E+02 0.013 26.2 11.8 34 396-432 11-44 (292)
103 3mwb_A Prephenate dehydratase; 31.0 4E+02 0.014 26.5 11.8 111 321-442 127-251 (313)
104 3nrb_A Formyltetrahydrofolate 30.8 1.4E+02 0.0048 29.4 8.3 35 474-510 7-41 (287)
105 3iwt_A 178AA long hypothetical 30.8 1.1E+02 0.0037 27.4 7.0 67 204-298 40-107 (178)
106 3lou_A Formyltetrahydrofolate 28.1 87 0.003 31.0 6.2 35 474-510 10-44 (292)
107 1g8l_A Molybdopterin biosynthe 27.2 1.7E+02 0.0058 30.3 8.6 71 204-306 204-274 (411)
108 1di6_A MOGA, molybdenum cofact 26.9 1.7E+02 0.0059 26.9 7.8 69 205-299 24-93 (195)
109 1uuy_A CNX1, molybdopterin bio 26.2 1.8E+02 0.0061 25.8 7.6 43 246-300 56-99 (167)
110 1uz5_A MOEA protein, 402AA lon 26.1 1.4E+02 0.0046 31.0 7.6 70 205-306 208-277 (402)
111 2pbq_A Molybdenum cofactor bio 25.7 1.7E+02 0.0058 26.4 7.3 65 205-299 26-95 (178)
112 1jlj_A Gephyrin; globular alph 25.3 1.8E+02 0.0063 26.5 7.6 67 204-299 34-105 (189)
113 1hwu_A PII protein; herbaspiri 25.2 2.8E+02 0.0097 22.7 8.2 81 436-539 4-84 (112)
114 1ygy_A PGDH, D-3-phosphoglycer 24.4 3.5E+02 0.012 28.8 10.7 117 349-472 387-527 (529)
115 3mtj_A Homoserine dehydrogenas 23.7 1.8E+02 0.006 30.6 7.9 66 407-481 368-440 (444)
116 3m05_A Uncharacterized protein 23.0 2.3E+02 0.008 23.9 7.1 26 514-539 47-72 (114)
117 3nrb_A Formyltetrahydrofolate 21.5 5.7E+02 0.02 24.9 11.7 34 395-431 7-40 (287)
118 3ewi_A N-acylneuraminate cytid 21.2 1E+02 0.0034 27.6 4.8 50 304-366 11-61 (168)
No 1
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=1.9e-95 Score=795.48 Aligned_cols=495 Identities=80% Similarity=1.144 Sum_probs=430.2
Q ss_pred cceeeeccccccccccccCCCcceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcC
Q 008693 59 ARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138 (557)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~ 138 (557)
...+++++++.|+ .+..+.++.|+|+|||||||+|++++++|+++|....+++++||||||||+||.|+++++.+..++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~ 84 (510)
T 2cdq_A 6 IVRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 84 (510)
T ss_dssp --------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhcc
Confidence 3456777664443 345567889999999999999999999999999775567899999999999999999988765544
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCC
Q 008693 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV 218 (557)
Q Consensus 139 ~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi 218 (557)
....++...++.++++|.+++++|+.+.+.+++.+++|++++.++...++++++.+|+++|+||++|+.+++++|+++|+
T Consensus 85 ~~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi 164 (510)
T 2cdq_A 85 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGV 164 (510)
T ss_dssp TTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44445667899999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCC-CCceeecCCCcchhHHHHHHHH
Q 008693 219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKA 297 (557)
Q Consensus 219 ~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~-~G~~ttlgRgGSD~tAa~lA~~ 297 (557)
+|++++++|++++|+++|+++++.+.++.++.+++...|++.+.|||++||+|.+ + +|.++|+||||||++|+++|.+
T Consensus 165 ~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~ 243 (510)
T 2cdq_A 165 KARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKA 243 (510)
T ss_dssp CEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHH
T ss_pred CEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHH
Confidence 9999999999999999999888876666666777765456788999999999998 6 8999999999999999999999
Q ss_pred cCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEec
Q 008693 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (557)
Q Consensus 298 L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (557)
|+|++|++|||||||||+|||++|+|++|+++||+|+.+|+++|++||||+|++||+++|||++|+|+++|+.+||+|.+
T Consensus 244 l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~ 323 (510)
T 2cdq_A 244 LGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITK 323 (510)
T ss_dssp HTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEES
T ss_pred cCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHH
Q 008693 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDH 457 (557)
Q Consensus 378 ~~~~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~ 457 (557)
...+.+..|++|+.++++++|++.+.+|.+.+||++++|+.|+++||+|+||++|+.+|||+++.++....+..++.++.
T Consensus 324 ~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~~~l~~ 403 (510)
T 2cdq_A 324 TRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDH 403 (510)
T ss_dssp CCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHH
T ss_pred cccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhhhhhHHHHHHHH
Confidence 65444557999999999999999999999999999999999999999999999999999999998764321111235667
Q ss_pred HHHHHhhhheeecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008693 458 VVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 458 ~~~~l~~~~~i~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
++++++.+..+.+.+++|+||+||.|...+|+++|+|++|+++||||+||+||+|+++|||+|+++|.++|+++||++||
T Consensus 404 ~~~el~~~~~v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~f~ 483 (510)
T 2cdq_A 404 VVEELEKIAVVNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFF 483 (510)
T ss_dssp HHHHHTTTSEEEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHh
Confidence 77778777789989999999999996678999999999999999999999999999999999999999999999999999
Q ss_pred cC-ccccccccccCCCCCC
Q 008693 538 ES-DLANLDCVCGSENNSS 555 (557)
Q Consensus 538 ~~-~~~~~~~~~~~~~~~~ 555 (557)
+. +.++....+...+|+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~ 502 (510)
T 2cdq_A 484 ESGDLSELLIQPRLGNGSP 502 (510)
T ss_dssp SSCCCCCCCCCCCC-----
T ss_pred cCCcceeeeeeccCCCCcc
Confidence 87 6788888888888885
No 2
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=2.2e-86 Score=713.30 Aligned_cols=426 Identities=30% Similarity=0.481 Sum_probs=362.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCc-------CcHHHHHhhHHhhhcCCCcchhhHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg-------~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (557)
+|+|+|||||||+|+++|++|+++|.+. +++++|||||||+ +||.|+++++.+... .++.+.++.+++
T Consensus 3 ~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~~ 77 (446)
T 3tvi_A 3 KIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLISQ 77 (446)
T ss_dssp -CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHHH
T ss_pred ccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHHH
Confidence 6899999999999999999999999874 4678999999995 999999998876543 346788999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEe
Q 008693 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (557)
Q Consensus 154 ~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (557)
+|.+++++|+.+.+. ++++++++..+. ..+.+|+|+|+||++|+.||+++| ++.+++++++++.++
T Consensus 78 ~~~~i~~~L~~~~~~----~~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~ 143 (446)
T 3tvi_A 78 RYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDK 143 (446)
T ss_dssp HHHHHHHHHTCCSCH----HHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC
T ss_pred HHHHHHHHhcccHHH----HHHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCC
Confidence 999999999877543 233333333321 126789999999999999999996 589999999865544
Q ss_pred cCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 234 ~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+++.+++.+++.+.+ +++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||
T Consensus 144 ---~~~~~~~~~~~~l~~-----~l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvy 214 (446)
T 3tvi_A 144 ---SGCFDEKKSYEKIKE-----KVLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFL 214 (446)
T ss_dssp -----CBCHHHHHHHHHH-----HTTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCB
T ss_pred ---CCceehHhhHHHHHH-----HHhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccC
Confidence 445555555544432 35678999999999999 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcc--eeeEEee
Q 008693 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA--VLTSIVL 391 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~--~Vt~Is~ 391 (557)
|+|||++|+|++|+++||+||.||+++|++||||+|++||+++|||++|+|+++|+.+||+|.+...+.+. .|++|+.
T Consensus 215 t~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~ 294 (446)
T 3tvi_A 215 MADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAG 294 (446)
T ss_dssp SSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEE
T ss_pred CCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999987654333 7999999
Q ss_pred eccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhh---hhee
Q 008693 392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEK---IAIV 468 (557)
Q Consensus 392 ~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~---~~~i 468 (557)
++|+++|++.+.+|.+.+||++++|+.|++++|+|+++++++.+++|+++++++.. .+..+++++.. ...+
T Consensus 295 ~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~~~is~~V~~~d~~~------~~~~~~~el~~~~~~~~v 368 (446)
T 3tvi_A 295 KKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSLVIEDCKLDG------KCDKIIEEIKKQCNPDSI 368 (446)
T ss_dssp EEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEETTEEEEEEEHHHHTT------THHHHHHHHHHHSCCSEE
T ss_pred cCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCCCEEEEEEecchHHH------HHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999999999999999999999998876431 12233334433 3568
Q ss_pred ecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008693 469 NLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540 (557)
Q Consensus 469 ~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 540 (557)
++.+++++|++||. |...||+++|+|++|+++||||+||+||+|+++||++|+++|.++|+++||++||+..
T Consensus 369 ~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH~~ff~~~ 441 (446)
T 3tvi_A 369 EIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIYNAFNEGH 441 (446)
T ss_dssp EEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHHHHHC---
T ss_pred EEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence 88899999999997 8889999999999999999999999999999999999999999999999999999863
No 3
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=100.00 E-value=1.2e-84 Score=707.96 Aligned_cols=446 Identities=37% Similarity=0.633 Sum_probs=402.0
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcC-CCC-ccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSF-PNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~-~~~-~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
||+|+|||||||+|++++++|+++|.+. .++ +++||||||||+||.|+++++.+...+ ...++.+.++.++++|.++
T Consensus 1 ~~~V~KFGGtSv~~~~~i~~va~ii~~~~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 79 (473)
T 3c1m_A 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR-DIAKVGDFIKFIREKHYKA 79 (473)
T ss_dssp -CEEEEECTTTTSSHHHHHHHHHHHHHHHTTCSCEEEEECCSTTHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhhcCCCCEEEEEcCChhhHHHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999763 346 789999999999999999887664311 1235677899999999999
Q ss_pred HHHhCCCH---H----HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 159 VDELGIDR---S----IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 159 ~~~l~~~~---~----~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
+++|..+. + .++..+++|++++.++..+++++++.+|+++++||++|+.+++++|+++|++|+++++++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~ 159 (473)
T 3c1m_A 80 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGII 159 (473)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEE
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEE
Confidence 99998762 3 6888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcee-eecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 232 t~~~~~~a~i-~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
|+++|+++++ .+.+++.++. +++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++|||||
T Consensus 160 t~~~~~~~~~~~~~~~~~i~~-----ll~~g~ipVv~G~~g~~-~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVd 233 (473)
T 3c1m_A 160 TDNNFGSARVKRLEVKERLLP-----LLKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVS 233 (473)
T ss_dssp ECSCTTSCCEEEECHHHHHHH-----HHHTTCEEEEESSEEEE-TTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EccCCCCccccHhhhHHHHHH-----HHhCCcEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCC
Confidence 9999999988 5777766654 24678899999999998 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is 390 (557)
|||++|||++|++++++++||+|+.+|+++|+++|||+++++|+++|||++|+|+++|+.+||+|.+...+.+..+++|+
T Consensus 234 Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~~~~~~v~gIa 313 (473)
T 3c1m_A 234 GVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAIS 313 (473)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCCTTSCCEEE
T ss_pred cceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHHHHcCCEEEEEecCCCCCceEEEeccccccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986544455799999
Q ss_pred eeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchhhhHHHHHHHHHHHHHHH------
Q 008693 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQELDHVVEEL------ 462 (557)
Q Consensus 391 ~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l------ 462 (557)
.++|+++|++.+.+|.+.+|+++++|+.|+++||+|+||+ +|+.+++|++++++.. +.++.+.+++
T Consensus 314 ~~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d~~------~a~~~L~~~l~~~~~~ 387 (473)
T 3c1m_A 314 TIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVD------KALKALKREFGDFGKK 387 (473)
T ss_dssp EEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGGHH------HHHHHHHHHHCC----
T ss_pred ccCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEechHHH------HHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999999998 7889999999987632 2233333445
Q ss_pred --hh---hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008693 463 --EK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 463 --~~---~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
+. +..+.+.+++++|++||. |...||+++++|++|+++||||+||+||+|+.+||++|+++|.++|+++||++|
T Consensus 388 ~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~Av~aLh~~f 467 (473)
T 3c1m_A 388 SFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF 467 (473)
T ss_dssp CTTSCCCEEEEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred ccccccccceEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHHHHHHHHHHH
Confidence 33 456888899999999997 888999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 008693 537 FES 539 (557)
Q Consensus 537 ~~~ 539 (557)
|+.
T Consensus 468 ~~~ 470 (473)
T 3c1m_A 468 IEK 470 (473)
T ss_dssp TTC
T ss_pred hcc
Confidence 974
No 4
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=100.00 E-value=3.5e-86 Score=714.24 Aligned_cols=443 Identities=35% Similarity=0.514 Sum_probs=385.1
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
|+|+|+|||||||+|++++++|+++|... .++++||||||||+||.|+++++.+. ...+.+.++.++++|.+++
T Consensus 2 m~~~V~KFGGTSv~~~e~i~~va~ii~~~-~~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i~ 75 (449)
T 2j0w_A 2 SEIVVSKFGGTSVADFDAMNRSADIVLSD-ANVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAIL 75 (449)
T ss_dssp -CCEEEEECSGGGSSHHHHHHHHHHHTSC-TTEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999764 34789999999999999999876531 1235556889999999999
Q ss_pred HHhCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 160 DELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 160 ~~l~~~~~---~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
++|..+.. .++..+++| +.+.++..+.+ +++.+|+++|+||.+|+.+++.+|+++|+++++++++|+ ++|+++|
T Consensus 76 ~~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~ 152 (449)
T 2j0w_A 76 ERLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRF 152 (449)
T ss_dssp TTSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCT
T ss_pred HHhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCC
Confidence 99987643 577888888 55677776655 599999999999999999999999999999999999999 8898899
Q ss_pred CCceeeecch-HHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 237 TNADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 237 ~~a~i~~~~~-~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
+++++...+. .+..+.+ ..|++. .|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||++
T Consensus 153 ~~~~~~~~~~~~~~~~~l-~~l~~~-~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 229 (449)
T 2j0w_A 153 GRAEPDIAALAELAALQL-LPRLNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTT 229 (449)
T ss_dssp TSCCBCHHHHHHHHHHHT-HHHHHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESS
T ss_pred CCccccHhHhHHHHHHHH-HHHhcC-CEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcC
Confidence 8887754332 2223223 233433 499999999999 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeeccE
Q 008693 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNV 395 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~ni 395 (557)
|||++|+|++|+++||+|+.+|+++|+|||||+|++||+++|||++|+|+++|+.+||+|.+... ....|++|+.++|+
T Consensus 230 DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~-~~~~v~gIa~~~~~ 308 (449)
T 2j0w_A 230 DPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE-NPPLFRALALRRNQ 308 (449)
T ss_dssp CTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS-SCCSEEEEEEEEEE
T ss_pred CCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc-cccccccceeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999998653 34569999999999
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeeccccee
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRS 475 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~a 475 (557)
++|++.+.+|.+.+||++++|+.|++++|+|+||++|+.++||+++.++.+.... ...++++..+++.+..+++.++++
T Consensus 309 ~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss~~sis~~v~~~~~~~~~~-~~~~~~~~~el~~~~~v~~~~~~a 387 (449)
T 2j0w_A 309 TLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTGD-TLLTQSLLMELSALCRVEVEEGLA 387 (449)
T ss_dssp EEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCCSSTTC-CSSCHHHHHHHHHHSCEEEEEEEE
T ss_pred EEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeCCCeEEEEEeccccchhhH-HHHHHHHHHHhccCCeEEEeCCeE
Confidence 9999999999999999999999999999999999999999999999765311000 012344555666567788889999
Q ss_pred EEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 476 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 476 iIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+|++||. |...+|+++|+|++|++ |||.||+||+|+++|||+|+++|.++|+++||++||+
T Consensus 388 ~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~~~Av~~lh~~f~~ 449 (449)
T 2j0w_A 388 LVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449 (449)
T ss_dssp EEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred EEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 9999997 88899999999999964 9999999999999999999999999999999999984
No 5
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=1e-72 Score=628.85 Aligned_cols=395 Identities=28% Similarity=0.428 Sum_probs=338.9
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|+++|+|||||||+|++++++++++|... .+.+++||+||||++||.|++++...
T Consensus 1 m~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~----------------------- 57 (600)
T 3l76_A 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQI----------------------- 57 (600)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHH-----------------------
T ss_pred CceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhh-----------------------
Confidence 67899999999999999999999999874 24678999999999999998754311
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
. ...+++.+|+++++||++|+.+++.+|+++|+++++++++|+++++++.++
T Consensus 58 -----~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~ 109 (600)
T 3l76_A 58 -----S-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS 109 (600)
T ss_dssp -----C-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC----
T ss_pred -----c-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC
Confidence 0 123577889999999999999999999999999999999999999988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCC--ceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G--~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
++++...++..+.+ +++.+.|||++||+|.+ ++| .++||||||||++|+++|.+|+|++|++||||||||++
T Consensus 110 ~~~~~~~~~~~i~~-----ll~~g~IpVv~Gf~g~~-~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 183 (600)
T 3l76_A 110 RARILEIRPDRLEH-----HLREGKVVVVAGFQGIS-SVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183 (600)
T ss_dssp ---CCEEEECCHHH-----HHTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSS
T ss_pred CceeccccHHHHHH-----HHhCCCEEEEECCeecC-CCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCC
Confidence 88876666554443 24678999999999999 489 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCC--------CCcceee
Q 008693 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--------MSKAVLT 387 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--------~~~~~Vt 387 (557)
|||++|+|++|+++||+|+.+|+++|+++|||+|++||+++|||++|+|+++| ++||+|.+... +.+..|+
T Consensus 184 dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~ 262 (600)
T 3l76_A 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVD 262 (600)
T ss_dssp CTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCC
T ss_pred CCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcce
Confidence 99999999999999999999999999999999999999999999999999985 79999998653 2345799
Q ss_pred EEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC-----ceeEEEeCCchhhhHHHHHHHHHHHHHHH
Q 008693 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLWSRELIQQELDHVVEEL 462 (557)
Q Consensus 388 ~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe-----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l 462 (557)
+|+.++|+++|++. +|.+.+||++++|+.|++++|+|+||+++. .+++|+++.+++... .+.++++..++
T Consensus 263 gi~~~~~~~~i~i~--~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a---~~~l~~~~~el 337 (600)
T 3l76_A 263 GVEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTA---EAVTSAIAPAL 337 (600)
T ss_dssp EEEEECCCEEEEEE--EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHH---HHHHHHHGGGG
T ss_pred EEEeeCCEEEEEEe--CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHH---HHHHHHHHHHh
Confidence 99999999999998 688999999999999999999999999876 689999998875431 22234433344
Q ss_pred h------hhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 463 E------KIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 463 ~------~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
. ....+.+.+++++|++||. |...+|+++++|++|++++|||.||++ |+++|+++|+++|.++|+++||++
T Consensus 338 ~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~ist--Se~~Is~vI~~~d~~~Av~aLh~~ 415 (600)
T 3l76_A 338 RSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIST--SEVKVSCVIDQRDADRAIAALSNA 415 (600)
T ss_dssp SSSTTCSSSSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred hccccccCcceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEec--CCCEEEEEEcHHHHHHHHHHHHHh
Confidence 1 3457888899999999997 888999999999999999999999995 899999999999999999999999
Q ss_pred hccC
Q 008693 536 FFES 539 (557)
Q Consensus 536 f~~~ 539 (557)
|+..
T Consensus 416 f~~~ 419 (600)
T 3l76_A 416 FGVT 419 (600)
T ss_dssp TTCC
T ss_pred hccc
Confidence 9986
No 6
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=7.6e-72 Score=599.69 Aligned_cols=394 Identities=34% Similarity=0.488 Sum_probs=313.8
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|+++|+|||||||++++++++++++|... .+.++|||+||+|+.||.|++.....
T Consensus 1 m~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~----------------------- 57 (421)
T 3ab4_A 1 MALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV----------------------- 57 (421)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH-----------------------
T ss_pred CCeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh-----------------------
Confidence 57899999999999999999999999764 34578999999999999998753210
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
....+++.+|+++++||.+|+.+++++|+++|+++++++++++++++++.|+
T Consensus 58 ----------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~ 109 (421)
T 3ab4_A 58 ----------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG 109 (421)
T ss_dssp ----------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------
T ss_pred ----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC
Confidence 0123578899999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCC-CceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~-G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taD 316 (557)
++++...+.+.+.+ +++.+.|||++||+|.+ ++ |+++|+||||||++|+++|.+|+|++|++||||||||++|
T Consensus 110 ~~~v~~~~~~~i~~-----~l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d 183 (421)
T 3ab4_A 110 NARIVDVTPGRVRE-----ALDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 (421)
T ss_dssp ------CCHHHHHH-----HHHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSC
T ss_pred CeeechhhHHHHHH-----HHhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCC
Confidence 88887766665543 34678999999999998 58 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecC-CC--CCcceeeEEeeec
Q 008693 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS-RD--MSKAVLTSIVLKR 393 (557)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~-~~--~~~~~Vt~Is~~~ 393 (557)
||++|++++|++|||+|+.+|+++|++++||+|+++|+++|||++|+|+++| ++||+|.++ .. +....|++|+.++
T Consensus 184 Pr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~ 262 (421)
T 3ab4_A 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDK 262 (421)
T ss_dssp TTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeC
Confidence 9999999999999999999999999999999999999999999999999999 799999876 32 2344699999999
Q ss_pred cEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cC-----ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh
Q 008693 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SE-----VSLSLTLDPSKLWSRELIQQELDHVVEELEKIA 466 (557)
Q Consensus 394 nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se-----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~ 466 (557)
|+++|++.+ |.+.+|+++++|+.|+++||+|+||++ ++ .+++|+++.++.... .+.++++..++. ..
T Consensus 263 ~~~~i~v~~--~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a---~~~l~~~~~~~~-~~ 336 (421)
T 3ab4_A 263 SEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRA---MEILKKLQVQGN-WT 336 (421)
T ss_dssp SEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHH---HHHHHHHHTTTT-CS
T ss_pred CEEEEEEec--cCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHH---HHHHHHHHHHcC-Cc
Confidence 999999996 778899999999999999999999963 43 589999998764321 122333333333 34
Q ss_pred eeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 467 IVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 467 ~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
.+.+.+++++|++||. |...||+++++|++|+++||||.||++ |+.+|+++|+++|.++|+++||++|+++
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vV~~~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--SEIRISVLIREDDLDAAARALHEQFQLG 408 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEc--CCCeEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 6888899999999997 888999999999999999999999985 8999999999999999999999999975
No 7
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.97 E-value=6.4e-30 Score=256.67 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=165.8
Q ss_pred CCcceEEEEecccccCC-------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 78 EKQLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 78 ~~~~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
+.++++|+||||+++.+ .+.++++++.|.... +.++|+|+|| |...+.+.
T Consensus 10 ~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~-------------------- 68 (255)
T 2jjx_A 10 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL-------------------- 68 (255)
T ss_dssp CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH--------------------
T ss_pred ccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH--------------------
Confidence 45678999999999995 789999999998642 3466777776 55544321
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHH-cCCceEEeccce
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFD 227 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~-~Gi~a~~l~~~~ 227 (557)
++.++.+.. +....+++. ..+++.||+.+|++ +|+++.++++.+
T Consensus 69 ----------~~~~g~~~~----------------------~~~~~~~~~---~~~~~~ll~~~l~~~~Gi~a~~l~~~~ 113 (255)
T 2jjx_A 69 ----------AEEWGIDRV----------------------EADNIGTLG---TIINSLMLRGVLTSKTNKEVRVMTSIP 113 (255)
T ss_dssp ----------HHHTTCCHH----------------------HHHHHHHHH---HHHHHHHHHHHHHHHCSSCEEEEESSC
T ss_pred ----------HHHcCCCCC----------------------ChHHHhHHH---HHHHHHHHHHHHHhhcCCceEEecHHH
Confidence 112222210 001123333 37899989999999 999999999988
Q ss_pred eEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEee
Q 008693 228 IGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307 (557)
Q Consensus 228 ~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~T 307 (557)
.+++++ ..+...+ . .+++.+.|||++| | + .++.++ +|++|+++|.+|+|+++++||
T Consensus 114 ~~~v~~---------~~~~~~~----~-~lL~~g~IpVi~g--g-~-g~~~vt------tD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 114 FNAVAE---------PYIRLRA----V-HHLDNGYIVIFGG--G-N-GQPFVT------TDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp CCSSSE---------ECCHHHH----H-HHHHTTCEEEEES--T-T-SCSSCC------SHHHHHHHHHHHTCSEEEEEE
T ss_pred cCcccC---------cccHHHH----H-HHHhCCcEEEEeC--C-C-CCCccc------hHHHHHHHHHhcCCCEEEEEe
Confidence 643322 1122222 2 2457899999998 3 2 133333 699999999999999999999
Q ss_pred -CCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEec
Q 008693 308 -DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 308 -DVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
||||||++||+++|++++|++|||+|+.++ |.+++||.|++++.++|+|++|.|+++|+ ..||+|.+
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~ 246 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLIND 246 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEES
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEec
Confidence 999999999999999999999999998875 99999999999999999999999999984 68999987
Q ss_pred C
Q 008693 378 S 378 (557)
Q Consensus 378 ~ 378 (557)
+
T Consensus 247 ~ 247 (255)
T 2jjx_A 247 D 247 (255)
T ss_dssp S
T ss_pred C
Confidence 4
No 8
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=2.4e-30 Score=255.06 Aligned_cols=205 Identities=18% Similarity=0.221 Sum_probs=159.9
Q ss_pred ceEEEEecccccC--CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 81 ~~~V~KFGGsSv~--~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
+++|+||||+++. +++.++++++.|.... +.++|+|+|| |.+++.+++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~--------------------------- 52 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIK--------------------------- 52 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHH---------------------------
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHH---------------------------
Confidence 3689999999999 8999999999998642 3456666665 555554432
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
++++++. +++..|.+.++|+.+++.|++.+|+++|+++ +
T Consensus 53 -~~~~~g~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------ 91 (226)
T 2j4j_A 53 -LAREIGI-------------------------GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------ 91 (226)
T ss_dssp -HHHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred -HHHHhCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence 2223332 2345677888999999999999999999854 1
Q ss_pred CCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCC
Q 008693 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (557)
Q Consensus 237 ~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taD 316 (557)
..++..+. .+++.+.|||++| | . . .+++|++|+++|.+|+|+++++||||||||++|
T Consensus 92 ------~~~~~~i~-----~ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d 148 (226)
T 2j4j_A 92 ------PQSLEEFI-----QDWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD 148 (226)
T ss_dssp ------CSSHHHHH-----HHHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred ------cCCHHHHH-----HHHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence 12233332 2357889999999 3 2 1 345999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHc-CCC------cchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEec
Q 008693 317 PNIHPHAKPVPYLTFDEAAELAYF-GAQ------VLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~-Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
|+++|++++|+++||+|+.+++.. |++ ++||+++.+|.++|+|++|.|+++|+ ..||+|.+
T Consensus 149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 149 PRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp TTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999644 676 99999999999999999999988874 46888864
No 9
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.97 E-value=7.4e-30 Score=253.47 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=164.4
Q ss_pred cceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 80 ~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
++++|.||||+++. +.+.++++++.|.... +.++|+|+|+ |...+...
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~Gg-G~~~~g~~---------------------- 63 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGG-GNIFRGVS---------------------- 63 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHH----------------------
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-cHHHhchh----------------------
Confidence 57899999999999 4689999999998753 3455556554 32211110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
+..++. +++..|.+.++|+.+|+.++..+|.+.|+++.++++.+.+.
T Consensus 64 --------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~ 110 (239)
T 1ybd_A 64 --------AQAGSM-------------------------DRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQ 110 (239)
T ss_dssp --------HHHTTS-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSS
T ss_pred --------HHHcCC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccc
Confidence 122332 22344567778999999999999999999999999876533
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
+.. +| .+ . ... .+++.+.|||++||.|. .++++|++|+++|.+|+|++++||||||
T Consensus 111 ~~~-~~-------~~-~----~~~-~ll~~g~ipVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTdVd 166 (239)
T 1ybd_A 111 IAE-TY-------AR-P----KAI-QYLEEGKVVIFAAGTGN----------PFFTTDTAAALRGAEMNCDVMLKATNVD 166 (239)
T ss_dssp SCE-EC-------CH-H----HHH-HHHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred ccc-ch-------hH-H----HHH-HHHhCCcEEEEECCccC----------CCCCcHHHHHHHHHhcCCCEEEEeeCCC
Confidence 221 11 11 1 122 23578999999987542 1256999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
|||++||+.+|+|++|++++|+|+.++ |+++|||+++.+|.++|+|++|.|+++|+ ..||+|.
T Consensus 167 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~ 238 (239)
T 1ybd_A 167 GVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 (239)
T ss_dssp SCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred ccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence 999999999999999999999999875 89999999999999999999999998874 4588775
No 10
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=1.9e-29 Score=253.47 Aligned_cols=234 Identities=18% Similarity=0.262 Sum_probs=178.5
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|+++|+||||+++.+++.++++++.|... ...+++||||++|+.||.|++........ +
T Consensus 2 m~~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~-----------------~-- 62 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKK-----------------K-- 62 (258)
T ss_dssp CCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCE-----------------E--
T ss_pred CccEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcce-----------------e--
Confidence 45799999999999999999999999753 23567999999999999998753211000 0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
++++ ..+....+.+ ..+++.+|+.+++ .|+++|+++..+++.+.++++..+.
T Consensus 63 -----------------------~glr---~t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~ 115 (258)
T 1gs5_A 63 -----------------------NGLR---VTPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQL 115 (258)
T ss_dssp -----------------------TTEE---CBCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEEC
T ss_pred -----------------------CCEe---eCCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEc
Confidence 0000 0011111111 2346689998886 5799999999999999888887532
Q ss_pred C----C-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 237 T----N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 237 ~----~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
. . .++...+.+.++. +++++.|||++|| |.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||
T Consensus 116 ~~d~~~~g~~~~~~~~~i~~-----ll~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~G 184 (258)
T 1gs5_A 116 DEELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSG 184 (258)
T ss_dssp CGGGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSS
T ss_pred CCCCCCcCceeEECHHHHHH-----HHHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCc
Confidence 2 1 2344455554433 3568899999998 777 589999886 999999999999999 999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
||++| +++|+++||+|+.+++..|. ++.|+.|++++++.++|++|.|+++|+ ..||+|.
T Consensus 185 v~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 185 ILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred eECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 99986 57899999999999987654 778888999999999999999988763 4688875
No 11
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.96 E-value=2.6e-29 Score=251.01 Aligned_cols=217 Identities=21% Similarity=0.275 Sum_probs=160.4
Q ss_pred CcceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHH
Q 008693 79 KQLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~ 149 (557)
.|+++|.||||+++. +.+.++++++.|.... +.++|+|+|+ |.+.+.+.
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGg-G~~~~~~~--------------------- 64 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGG-GNLFRGAK--------------------- 64 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCCHH---------------------
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ChHhcchh---------------------
Confidence 367899999999999 5689999999998743 2345555555 55543221
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeE
Q 008693 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (557)
Q Consensus 150 ~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (557)
+..++. +++..|.+.++|+.+|+.++..+|.+.|+++.++++.+.+
T Consensus 65 ---------~~~~g~-------------------------~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~ 110 (247)
T 2a1f_A 65 ---------LAKAGM-------------------------NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLN 110 (247)
T ss_dssp ---------HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCT
T ss_pred ---------HHHcCC-------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Confidence 112222 2334566778899999999999999999999999987753
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 230 iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
.+.+ .| .... +. .+++.+.|||++|+.| . .++++|++|+.+|.+|+|++++|||||
T Consensus 111 ~~~~-~~--------~~~~----~~-~ll~~g~ipVi~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~liilTDV 166 (247)
T 2a1f_A 111 GICD-TY--------NWSE----AI-KMLREKRVVIFSAGTG------N----PFFTTDSTACLRGIEIEADVVLKATKV 166 (247)
T ss_dssp TTSE-EC--------CHHH----HH-HHHHTTCEEEEESTTS------C----SSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred cccc-hh--------hHHH----HH-HHHhCCCEEEEeCCcC------C----CCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence 2211 11 1122 22 3457889999998532 2 235699999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEecC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (557)
||||++|||++|++++|+++||+|+.++ |+++|||+++.+|.++|+|++|.|+++|+ ..||+|...
T Consensus 167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 167 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred CcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 9999999999999999999999999875 89999999999999999999999998773 468888653
No 12
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.96 E-value=6.8e-29 Score=247.02 Aligned_cols=214 Identities=22% Similarity=0.298 Sum_probs=160.6
Q ss_pred cceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 80 ~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
++.+|.||||+++. |.+.++++++.|.... +.++|+|+|+ |.+.+.+...
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG-G~~~~g~~~~-------------------- 65 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGG-GNIIRGVSAA-------------------- 65 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTTC--------------------------
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-cHHHhHhHHH--------------------
Confidence 56799999999998 7899999999998753 3456666665 5554322100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.++. ......|++-.+.+.+|+.+++.+|+++|++++.+++.+++.
T Consensus 66 ----------~~G~------------------------~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~ 111 (240)
T 4a7w_A 66 ----------QGGI------------------------IRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKE 111 (240)
T ss_dssp -------------C------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred ----------hcCC------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCc
Confidence 0110 011222333334568999999999999999999999887642
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
.+ + ..+...+. .+++++.|||++|+.|.. . +.+|++|+++|.+|+|+.+++|||||
T Consensus 112 ~~-------~--~~~~~~i~-----~lL~~g~ipVi~~~~g~~----~------~~~D~~Aa~lA~~l~Ad~li~lTdVd 167 (240)
T 4a7w_A 112 IC-------E--SYIYRKAI-----RHLEKGRVVIFGAGTGNP----F------FTTDTAATLRAIEIGSDLIIKATKVD 167 (240)
T ss_dssp TS-------E--ECCHHHHH-----HHHHTTCEEEEESTTSCT----T------SCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred cc-------C--cCcHHHHH-----HHHHCCCEEEEeCCCCCC----C------CChHHHHHHHHHHcCCCEEEEccCCC
Confidence 11 1 12333332 235788999999965421 1 34999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC----------CCCeeE
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN----------APGTLI 375 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I 375 (557)
|||++||+++|+|+++++++|+|+.++ |.+++||+|+.+|.++|+|++|.|+++|+ +.||.|
T Consensus 168 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 168 GIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp SEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred ceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 999999999999999999999998874 89999999999999999999999999874 357776
No 13
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.96 E-value=9.8e-29 Score=253.58 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=183.6
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|+||||+++.+++.++++++.|.... ....+|||+++|..++.+++...
T Consensus 25 ~k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 78 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLG-------------------------- 78 (299)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 467999999999999999999999887643 23345555557777777765321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
... ++.+++ +..++...|.+ ++.|+ ++.. +..+|++.|++++.+++.+.+++++..+
T Consensus 79 -----~~~-----------~~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~ 137 (299)
T 2ap9_A 79 -----IEG-----------DFKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRR 137 (299)
T ss_dssp -----CCC-----------CCSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEEC
T ss_pred -----Ccc-----------cccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEec
Confidence 000 000111 22345555554 34687 5665 6889999999999999999878876543
Q ss_pred C------------CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEE
Q 008693 237 T------------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (557)
Q Consensus 237 ~------------~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~ 304 (557)
+ .+++...+.+.+.+ +++.|.|||++|| +.+ ++|+.++++ +|++|+.+|.+|+|++++
T Consensus 138 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~li 207 (299)
T 2ap9_A 138 SVTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLL 207 (299)
T ss_dssp CBCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEE
T ss_pred ccccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 2 12343445554433 3568899999997 877 479999996 999999999999999999
Q ss_pred EeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CC
Q 008693 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------AP 371 (557)
Q Consensus 305 i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~ 371 (557)
|||||||||++||+ ++++|++|||+|+.+++.+|...|+|| ++..+.++|+| ++|.|+.+|+ ..
T Consensus 208 ilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~ 284 (299)
T 2ap9_A 208 MLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGT 284 (299)
T ss_dssp EEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCC
T ss_pred EEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCC
Confidence 99999999999998 689999999999999999999999998 88899999999 9999988875 35
Q ss_pred CeeEecCC
Q 008693 372 GTLIRRSR 379 (557)
Q Consensus 372 GT~I~~~~ 379 (557)
||+|.+..
T Consensus 285 GT~i~~~~ 292 (299)
T 2ap9_A 285 GTKVVRGE 292 (299)
T ss_dssp SEEEECCC
T ss_pred cEEEecCC
Confidence 89997653
No 14
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.96 E-value=2.3e-28 Score=244.89 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=166.7
Q ss_pred cceEEEEecccccC-------CHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 80 ~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
++++|+||||+++. +.+.++++++.|.... ....+|+|++.|...+.+.
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~----------------------- 63 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP----------------------- 63 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-----------------------
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-----------------------
Confidence 56799999999999 4689999999998753 2334444454455544331
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
+++++.+ ++..|.+.++++.+++.++..+|.+.|++++.+++.+.+.+
T Consensus 64 -------~~~lg~~-------------------------~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~ 111 (252)
T 1z9d_A 64 -------AADAGMD-------------------------RVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNV 111 (252)
T ss_dssp -------HHHHTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTT
T ss_pred -------HHHcCCC-------------------------CCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence 0112222 22234556678899999999999999999999988765322
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEee-CCC
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD 310 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~T-DVd 310 (557)
++ .| . .. .+ ..+++.+.|||++|+. |. .++++|++|+.+|.+|+|++++||| |||
T Consensus 112 ~~-~~-------~-~~----~~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~DVd 167 (252)
T 1z9d_A 112 AE-PY-------I-RG----RA-LRHLEKNRIVVFGAGI------GS----PYFSTDTTAALRAAEIEADAILMAKNGVD 167 (252)
T ss_dssp BE-EC-------C-HH----HH-HHHHHTTCEEEEESTT------SC----TTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred cC-cc-------h-HH----HH-HHHHhCCCEEEEeCCc------CC----CCCChHHHHHHHHHhcCCCEEEEecCCCC
Confidence 11 11 1 12 22 2346789999999843 21 2466999999999999999999999 999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEecCC
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR 379 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~ 379 (557)
|||++||+++|++++|++++|+|+.+ +|+++||++++.+|.++|+|++|.|+++|+ ..||+|.+..
T Consensus 168 Gvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 168 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred eeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 99999999999999999999999887 588999999999999999999999999885 6799998754
No 15
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.96 E-value=3.6e-28 Score=242.23 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=164.2
Q ss_pred cceEEEEecccccCC-------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
++++|.|+||+++.+ .+.++++++.|.... +.++++|+|+ |.+..... .
T Consensus 9 ~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gG-G~~~~~~~-~-------------------- 66 (243)
T 3ek6_A 9 YRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGG-GNIFRGAG-L-------------------- 66 (243)
T ss_dssp CSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECS-TTTSCSTT-T--------------------
T ss_pred CcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH-H--------------------
Confidence 567999999999986 679999999998753 3455666664 44321110 0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
..++. +....|++.....++|+.++..+|++.|++++.+++.+.+.
T Consensus 67 ---------~~~g~-------------------------~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~ 112 (243)
T 3ek6_A 67 ---------AASGM-------------------------DRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND 112 (243)
T ss_dssp ---------SCSSS-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred ---------HHcCC-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence 01121 12223444445668999999999999999999999988643
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
+++ + .+...+ . .++++|.|||++|+.|.. .+.+|++|+++|.+|+|+.+++|||||
T Consensus 113 v~~-~--------~~~~~~----~-~lL~~g~IpVv~~~~g~~----------~~~~D~~Aa~lA~~l~Ad~li~lTdVd 168 (243)
T 3ek6_A 113 VCE-D--------FIRRRA----I-RHLEKGRIAIFAAGTGNP----------FFTTDSGAALRAIEIGADLLLKATKVD 168 (243)
T ss_dssp TBE-E--------CCHHHH----H-HHHHTTCEEEEESTTSST----------TCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred ccC-c--------CCHHHH----H-HHHHCCcEEEEECCCCCC----------cCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence 322 1 122222 2 245789999999964421 245999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEec
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
|||++||+++|+|+++++++|+|+.+. |.+++|++|+..|.++|+|++|.|+++|+ ..||+|.+
T Consensus 169 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 169 GVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SCBSSCGGGCTTCCBCSEECHHHHHHH---TCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred ccCCCCCCCCCCceecccccHHHHHhC---CchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999998873 88999999999999999999999998874 46999875
No 16
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.95 E-value=1.2e-27 Score=242.53 Aligned_cols=215 Identities=21% Similarity=0.335 Sum_probs=157.7
Q ss_pred CcceEEEEecccccC------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 79 KQLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
..+++|+|+||+++. |.+.++++++.|.+.. +.++++|+|+ |.+...+...
T Consensus 49 ~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~Gg-G~i~~g~~~~-------------------- 107 (281)
T 3nwy_A 49 GYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGG-GNFFRGAQLQ-------------------- 107 (281)
T ss_dssp CCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTC---CCTT--------------------
T ss_pred cCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-hhHhhhHHHH--------------------
Confidence 356799999999998 5789999999998753 2344555544 5443322100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.++. .....|++..+++++|+.++...|+++|++++.+.+.+.+.
T Consensus 108 ----------~~gl-------------------------~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~ 152 (281)
T 3nwy_A 108 ----------QLGM-------------------------ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQ 152 (281)
T ss_dssp ----------TTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGG
T ss_pred ----------hcCC-------------------------CccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccc
Confidence 0111 22234566667889999999999999999998888766543
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
++ +.|. +.+... +++++.|||++|+.| .. ++++|++|+++|.+|+||.+++|||||
T Consensus 153 ~~-~~~~------------~~~~l~-lL~~g~IpVv~g~~g------~~----~~~~D~~Aa~lA~~l~Ad~LiilTDVd 208 (281)
T 3nwy_A 153 VA-EPYL------------PLRAVR-HLEKGRVVIFGAGMG------LP----YFSTDTTAAQRALEIGADVVLMAKAVD 208 (281)
T ss_dssp GS-EECC------------HHHHHH-HHHTTCEEEEESTTS------ST----TCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred cc-cccc------------hHHHHH-HHHcCCeEEEECCCC------CC----CCCHHHHHHHHHHHcCCCEEEEeeccC
Confidence 32 1221 112222 457899999999543 21 256999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
|||++||+.+|+|++|++++|+|+.+ .|.++++++|+..|.++|+|++|.|.++|+ ..||+|.
T Consensus 209 GVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 209 GVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp SCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred ccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 99999999999999999999999865 588999999999999999999999998874 4688875
No 17
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.95 E-value=1.4e-27 Score=251.13 Aligned_cols=228 Identities=20% Similarity=0.296 Sum_probs=139.9
Q ss_pred cceEEEEecccccCC------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
.+++|.||||+++.+ .+.++++++.|.... +.++|+|+|++ +.--+.
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg--i~~g~~----------------------- 58 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGRE----------------------- 58 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHHH-----------------------
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH--HHHHHH-----------------------
Confidence 367999999999998 489999999988753 34555555543 211110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
.++.+. +..+....+++++.|+...+.++..+|+++|+++. ++ ++
T Consensus 59 ---------~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~-----qv-ll 103 (367)
T 2j5v_A 59 ---------HLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVG-----QM-LL 103 (367)
T ss_dssp ---------HHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-----EE-EE
T ss_pred ---------HcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceE-----EE-EE
Confidence 122110 12234567778899999999999999999999975 33 55
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceee--cCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+.++|.+. ..+-+..+.+. .+++.+.|||+.+ +|.+.+ +.+|++|++|+++|.+|+|+.+++||||
T Consensus 104 t~~d~~~~----~r~~n~~~~i~-~LL~~g~IPIv~e-------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDV 171 (367)
T 2j5v_A 104 TRADMEDR----ERFLNARDTLR-ALLDNNVVPVINE-------NDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQ 171 (367)
T ss_dssp CGGGGSSH----HHHHHHHHHHH-HHHHTTCEEEEEE-------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ecccccCc----eEEEhHHHHHH-HHHHCCCEEEECC-------CCceecccccCCCHHHHHHHHHHhcCCCEEEEeecC
Confidence 66655432 11222223333 3567899999964 233333 6789999999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC---------CC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------AP 371 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (557)
||||++||+.+|++++|+++++ +|+.+++. +|..+|+| +++.+|.++|+|++|.|+++|+ ..
T Consensus 172 dGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~ 251 (367)
T 2j5v_A 172 KGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISV 251 (367)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCC
T ss_pred CceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCC
Confidence 9999999999999999999999 99999976 48899999 5899999999999999999986 78
Q ss_pred CeeEecCC
Q 008693 372 GTLIRRSR 379 (557)
Q Consensus 372 GT~I~~~~ 379 (557)
||+|.+..
T Consensus 252 GT~i~~~~ 259 (367)
T 2j5v_A 252 GTLFHAQA 259 (367)
T ss_dssp SEEECCCS
T ss_pred cEEEEcCc
Confidence 99998753
No 18
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.95 E-value=2.7e-27 Score=236.02 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=156.7
Q ss_pred cceEEEEecccccC----CHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (557)
Q Consensus 80 ~~~~V~KFGGsSv~----~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (557)
.+++|.||||+++. +.+.++++++.|....+...+|+|++.|..++.++..
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~~------------------------- 73 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEV------------------------- 73 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHH-------------------------
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHHH-------------------------
Confidence 45799999999999 7799999999998753233344444445555543321
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC
Q 008693 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (557)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (557)
++.++. +....+.+.+.|+.+++.|++.+|+++|+++ +
T Consensus 74 ---~~~~gl-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~-------- 111 (244)
T 2brx_A 74 ---AEKFNS-------------------------SETFKDFIGIQITRANAMLLIAALREKAYPV------V-------- 111 (244)
T ss_dssp ---HHTTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred ---HHHcCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence 222332 3345667777799999999998999999754 0
Q ss_pred CCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 236 ~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
..+.+.+. .+++.+.|||++| |.. .+.+|++|+++|.+|+|+++++||||||||++
T Consensus 112 -------~~~~~~i~-----~lL~~g~IpVi~g--g~~----------~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 167 (244)
T 2brx_A 112 -------VEDFWEAW-----KAVQLKKIPVMGG--THP----------GHTTDAVAALLAEFLKADLLVVITNVDGVYTA 167 (244)
T ss_dssp -------BCSHHHHH-----HHHHTTCBCEECC--CST----------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred -------cCCHHHHH-----HHHhCCCEEEEcC--CCC----------CCCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence 01223232 2357889999998 321 12499999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 316 DPNIHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
||+++|++++|+++||+|+.+++.. |+ .++++.|++++.+.++|++|.|+++|+ ..||+|.
T Consensus 168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~ 243 (244)
T 2brx_A 168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 243 (244)
T ss_dssp CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred CCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence 9999999999999999999999654 55 899999999999999999999877663 4688875
No 19
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.95 E-value=3e-27 Score=239.81 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=161.6
Q ss_pred eEEEEecccccCC--HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~--~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
++|.||||+ +.+ .+.++++++.|........+|+|++.|...+.+++..
T Consensus 41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~~---------------------------- 91 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVG---------------------------- 91 (276)
T ss_dssp EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHHH----------------------------
T ss_pred eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcc----------------------------
Confidence 799999999 888 6899999999987543334444444444433332210
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
.+.+. +....+.+...++.++..+++.++...|++++.+..
T Consensus 92 ~~~gl-------------------------~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~~-------------- 132 (276)
T 2ogx_A 92 LDLGL-------------------------PVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPT-------------- 132 (276)
T ss_dssp HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHHH--------------
T ss_pred CcCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC--------------
Confidence 11221 234556666667899999998888788886532210
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCce-eecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~-ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~ 318 (557)
..+.+. .+++.+.|||++||.+.+. ++.+ ..+.++++|++|+++|.+|+|+++++||||||||++||+
T Consensus 133 ---------~~~~i~-~lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~ 201 (276)
T 2ogx_A 133 ---------VADQLA-IHLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN 201 (276)
T ss_dssp ---------HHHHHH-HHHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred ---------hHHHHH-HHHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence 112222 2456789999999977652 1221 233566799999999999999999999999999999999
Q ss_pred --CCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHH--hCCCCEEEecCCCC---------CCCCeeEecC
Q 008693 319 --IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNP---------NAPGTLIRRS 378 (557)
Q Consensus 319 --~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~--~~~Ipv~I~n~~~p---------~~~GT~I~~~ 378 (557)
.+|++++|++++++|+.+++ |..+|||++..++. +.++|++|.|+++| +..||+|.+.
T Consensus 202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 202 GPDRGQARFLPETSATDLAKSE--GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp STTGGGCCEESEEEHHHHHTSC--SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred ccCCCCCeEcceeCHHHHHHHh--CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 89999999999999999987 88999999999988 66889999999988 5689999864
No 20
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.95 E-value=6.2e-27 Score=229.48 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=154.5
Q ss_pred ceEEEEecccccCC-HHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~-~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+++|.||||+++.+ .+.++++++.|.... +.++|+|+|+ |..++.++...
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~gg-G~~~~~~~~~~--------------------------- 52 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAREYIKSA--------------------------- 52 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHHHHHHH---------------------------
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECc-chHhcchHHHH---------------------------
Confidence 36899999999999 899999999997642 3455666665 77777764322
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
++++. ++...|.+.+.++.+++.+++.+|+.. +. +
T Consensus 53 -~~~g~-------------------------~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------~----------- 87 (219)
T 2ij9_A 53 -RELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSA-AK-------K----------- 87 (219)
T ss_dssp -HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------S-----------
T ss_pred -HHcCC-------------------------CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------C-----------
Confidence 22222 345567777778899999998766543 10 0
Q ss_pred ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCC
Q 008693 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (557)
Q Consensus 239 a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~ 318 (557)
...+.+.+. .+++.+.|||++| |. . .|++|++|+.+|.+|+|+++++||||||||++||+
T Consensus 88 ---~~~~~~~i~-----~ll~~g~ipVi~~--g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~ 147 (219)
T 2ij9_A 88 ---VPVDFMEAE-----ELSKLYRVVVMGG--TF------P----GHTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp ---CCSSHHHHH-----HHHTTCSEEEECC--CS------S----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred ---CcCCHHHHH-----HHHHCCCEEEEeC--CC------C----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCC
Confidence 112333332 2457899999998 31 1 23599999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeeEe
Q 008693 319 IHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR 376 (557)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~ 376 (557)
.+|++++|+++||+|+.+++.. |+ .+.|+.|++++.+.++|++|.|+ +| +..||+|.
T Consensus 148 ~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred CCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9999999999999999999765 55 89999999999999999999998 66 34688773
No 21
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.94 E-value=1.9e-26 Score=231.44 Aligned_cols=215 Identities=21% Similarity=0.244 Sum_probs=151.7
Q ss_pred cceEEEEecccccCC-------HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHH
Q 008693 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~ 152 (557)
++++|.||||+++.+ .+.++++++.|........+|+|++.|...+.+.
T Consensus 24 ~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~------------------------ 79 (256)
T 2va1_A 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI------------------------ 79 (256)
T ss_dssp CSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH------------------------
T ss_pred cCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch------------------------
Confidence 467999999999994 5789999998887433334555554466655432
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEE
Q 008693 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (557)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (557)
+..++.+. ...|....++..+++.++..+|++.|++++.+++.+.
T Consensus 80 ------~~~~g~~~-------------------------~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~---- 124 (256)
T 2va1_A 80 ------AKELDMDR-------------------------NLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC---- 124 (256)
T ss_dssp ------HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC----
T ss_pred ------HHHcCCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec----
Confidence 11222221 1122333445588999989999999999988876542
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeC-CCc
Q 008693 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (557)
Q Consensus 233 ~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TD-VdG 311 (557)
+.+.+.. .+ ..+ ..+++.+.|||++|+. |. .++++|++|+.+|.+|+|+++++||| |||
T Consensus 125 -~~~~~~~---~~-----~~~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdG 184 (256)
T 2va1_A 125 -DKLVHES---SA-----NNI-KKAIEKEQVMIFVAGT------GF----PYFTTDSCAAIRAAETESSIILMGKNGVDG 184 (256)
T ss_dssp -TTTCEEC---CH-----HHH-HHHHHTTCEEEEESTT------SS----SSCCHHHHHHHHHHHHTCSEEEEEESSCCS
T ss_pred -ccccchh---hH-----HHH-HHHHhCCcEEEEECCC------CC----CCCChhHHHHHHHHhCCCCEEEEeecccCe
Confidence 2322111 11 122 2346789999999832 32 24679999999999999999999999 999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
||++||+.+|++++|++++|+|+.++ +.++|+++++..|.++|+|++|.|.++|+ ..||+|.
T Consensus 185 Vy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 185 VYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp BCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred EEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999988 56788999999999999999999998874 4577775
No 22
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.94 E-value=1.3e-26 Score=237.74 Aligned_cols=237 Identities=16% Similarity=0.264 Sum_probs=172.7
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|.||||+++.+++.++++++.|.... ....+|||+++|...+.+++...
T Consensus 36 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 89 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN-------------------------- 89 (298)
T ss_dssp TCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT--------------------------
T ss_pred CCEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcC--------------------------
Confidence 356999999999999999999998887642 23334445556666676654321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC-
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~- 235 (557)
... ++.+++ +..++...|.+ ++.|+. +. .+...|++.|++++.+++.+.+++++.+
T Consensus 90 -----~~~-----------~~~~g~---R~t~~~~l~~~~~~~~G~~-n~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 148 (298)
T 2rd5_A 90 -----IPA-----------EFRDGL---RVTDATTMEIVSMVLVGKV-NK-NLVSLINAAGATAVGLSGHDGRLLTARPV 148 (298)
T ss_dssp -----CCC-----------CEETTE---ECBCHHHHHHHHHHHHHTH-HH-HHHHHHHHTTSCEEEEETTGGGCEEEEEC
T ss_pred -----CCc-----------cccCCc---ccCCHHHHHHHHHHHhchH-HH-HHHHHHHhCCCCccccChHHCCEEEEEeC
Confidence 000 001111 12234444433 224754 55 4677899999999999988777777654
Q ss_pred -----CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 236 -----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 236 -----~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
++. .++...+.+.+++ +++++.|||++|+ +.+ ..|+.++++ +|++|+.+|.+|+|++++|||||
T Consensus 149 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdV 218 (298)
T 2rd5_A 149 PNSAQLGFVGEVARVDPSVLRP-----LVDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDV 218 (298)
T ss_dssp TTHHHHBSEEEEEEECGGGHHH-----HHHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CccccCCcceEEEEECHHHHHH-----HHhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 332 2343444444432 3568899999997 777 478898886 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (557)
||||++||+ | +++|++++|+|+.+++..| ...|+|| ++..+.++|+| ++|.|+..|+ ..||+
T Consensus 219 dGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 295 (298)
T 2rd5_A 219 AGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTM 295 (298)
T ss_dssp SSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEE
T ss_pred cCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999999998 4 9999999999999998864 4679986 78889999999 9999987764 34777
Q ss_pred Ee
Q 008693 375 IR 376 (557)
Q Consensus 375 I~ 376 (557)
|.
T Consensus 296 i~ 297 (298)
T 2rd5_A 296 IT 297 (298)
T ss_dssp EE
T ss_pred Ee
Confidence 75
No 23
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.94 E-value=1.8e-26 Score=234.81 Aligned_cols=235 Identities=23% Similarity=0.282 Sum_probs=170.9
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|+||||+++.+++.++++++.|.... ....+|+|+++|..++.+++...
T Consensus 21 ~~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~-------------------------- 74 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG-------------------------- 74 (282)
T ss_dssp TCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999999999999887643 23335555557777777664321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec--
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~-- 234 (557)
.+. ++.+++ +..++...|.+ +..|+. +. .+...|++.|++++.+++.+.+++++.
T Consensus 75 -----~~~-----------~~~~g~---r~t~~~~l~~~~~~~~G~~-~~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 133 (282)
T 2bty_A 75 -----IEP-----------VFKNGH---RVTDEKTMEIVEMVLVGKI-NK-EIVMNLNLHGGRAVGICGKDSKLIVAEKE 133 (282)
T ss_dssp -----CCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH-HH-HHHHHHHTTTCCEEEEETTGGGSEEEEEC
T ss_pred -----CCc-----------cccCCc---ccCCHHHHHHHHHHHhhHH-HH-HHHHHHHhCCCCceecChhhCCEEEEecC
Confidence 000 000111 12234444432 225765 54 477889999999999998876666654
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+++. .++...+.+.+++ +++.+.|||++|| +.+ +.|+.++++ +|++|+.+|.+|+|+++++||||
T Consensus 134 ~~~~d~g~~g~v~~~~~~~i~~-----ll~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDV 203 (282)
T 2bty_A 134 TKHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDV 203 (282)
T ss_dssp CTTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CcccCCCcceEEEEecHHHHHH-----HHHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 3443 3444455554433 3568899999997 777 479888886 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchH--hHHHHHHhCCCC-EEEecCCCCC----------CCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (557)
||||++ | ++|+++||+|+.+++..|. ..|.| +++..|.++|+| ++|.|+..|+ ..||+
T Consensus 204 dGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~ 276 (282)
T 2bty_A 204 DGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTM 276 (282)
T ss_dssp SSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEE
T ss_pred CCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999997 3 8999999999999987654 44655 589999999998 9999877764 47999
Q ss_pred EecC
Q 008693 375 IRRS 378 (557)
Q Consensus 375 I~~~ 378 (557)
|.+.
T Consensus 277 i~~~ 280 (282)
T 2bty_A 277 IKEL 280 (282)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 9754
No 24
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=99.93 E-value=6.8e-26 Score=218.40 Aligned_cols=166 Identities=25% Similarity=0.369 Sum_probs=130.4
Q ss_pred CCCeeEecCCCCCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC-------ceeEEEeCC
Q 008693 370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-------VSLSLTLDP 442 (557)
Q Consensus 370 ~~GT~I~~~~~~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe-------~sIS~~I~~ 442 (557)
+.+++|....+|++..||||++.+|+++|++.+ |.+.|||++++|+.|+++|||||||+|+. ..++|+++.
T Consensus 10 ~s~~iv~e~~~mE~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 10 HSSGLVPRGNHMEDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp ----------CCCSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred ccCceEeCCCccccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 456777777778888999999999999999984 88999999999999999999999998652 347899988
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEe
Q 008693 443 SKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVN 521 (557)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~ 521 (557)
++..... +.+..+..++. ...+.+.+++++||+||. |...||+++|+|++|+++||||+||++ ||.+||++|+
T Consensus 88 ~d~~~~~---~~l~~~~~~~~-~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst--SEi~IS~vV~ 161 (200)
T 4go7_X 88 DVGPAAV---EKLDSLRNEIG-FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLCR 161 (200)
T ss_dssp GGHHHHH---HHHHTTHHHHC-CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEE
T ss_pred hhHHHHH---HHHHHHHhhhc-eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc--cCCEEEEEEe
Confidence 7654321 22333333333 356888899999999997 888999999999999999999999995 9999999999
Q ss_pred cccHHHHHHHHHHHhccCcccc
Q 008693 522 DDEAEQCVRALHETFFESDLAN 543 (557)
Q Consensus 522 ~~d~~kAv~~LH~~f~~~~~~~ 543 (557)
++|.++|+++||++|++....+
T Consensus 162 ~~d~~~Av~aLH~~F~L~~~~~ 183 (200)
T 4go7_X 162 DTELDKAVVALHEAFGLGGDEE 183 (200)
T ss_dssp GGGHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHHHHHHhCCCCCce
Confidence 9999999999999999875433
No 25
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=99.93 E-value=3.7e-26 Score=212.91 Aligned_cols=148 Identities=32% Similarity=0.488 Sum_probs=129.4
Q ss_pred CCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHH
Q 008693 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVE 460 (557)
Q Consensus 381 ~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~ 460 (557)
+++..|++|++++|+++|++.+.+|.+.+|+++++|+.|+++||+++|+++|+.+++|++++++ .+.++++
T Consensus 4 ~~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s~~~Isf~v~~~~---------~~~~il~ 74 (157)
T 3mah_A 4 TEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDK---------NLPDIVR 74 (157)
T ss_dssp ---CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECCSSEEEEEESCCT---------THHHHHH
T ss_pred CCCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEecCCEEEEEECChH---------HHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999999765 1234556
Q ss_pred HHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 461 ELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 461 ~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
+++....+++.+++++|++||. |...||+++++|++|+ ||||.||+||+|+++|+++|+++|.++|+++||++|+..
T Consensus 75 ~l~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~~~ 152 (157)
T 3mah_A 75 ALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNS 152 (157)
T ss_dssp HHTTTEEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred HHhccCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 6666678888999999999997 7889999999999999 999999999999999999999999999999999999976
No 26
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.93 E-value=9.9e-26 Score=227.88 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=163.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
++|.||||+++. .++++++.|.... +.++|+|+|++..+ +.+++..
T Consensus 1 ~iViKlGGs~l~---~~~~~~~~i~~l~~~G~~vViVhGgg~~~-~~~~~~~---------------------------- 48 (269)
T 2egx_A 1 MIVVKVGGAEGI---NYEAVAKDAASLWKEGVKLLLVHGGSAET-NKVAEAL---------------------------- 48 (269)
T ss_dssp CEEEEECCSTTC---CHHHHHHHHHHHHHHTCCEEEECCCHHHH-HHHHHHT----------------------------
T ss_pred CEEEEECHHHHH---HHHHHHHHHHHHHHCCCeEEEEECChHHH-HHHHHHc----------------------------
Confidence 479999999997 6777777776542 34566666654333 4443321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhh--chHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF--GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~--GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
+.+.. ..++.+++ ..+..++...+.+.+. |+. ...+...|+++|+++..+++.|.+++++...+
T Consensus 49 ---~~~~~--------~~~~~~g~-~~rvt~~~~l~~~~~~~~G~i--~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~ 114 (269)
T 2egx_A 49 ---GHPPR--------FLTHPGGQ-VSRLTDRKTLEIFEMVYCGLV--NKRLVELLQKEGANAIGLSGLDGRLFVGRRKT 114 (269)
T ss_dssp ---TCCCC--------C--------CCCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHTTCCEEEEETTGGGCEEECBC-
T ss_pred ---CCccc--------cccccCCc-cCcCCCHHHHHHHHHHHHhHH--HHHHHHHHHHCCCCeEEeCCCCccceeeeecc
Confidence 11100 00111222 0122345666777665 544 45678899999999999999997777765432
Q ss_pred ----------------C-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCc
Q 008693 238 ----------------N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300 (557)
Q Consensus 238 ----------------~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A 300 (557)
. +++...+.+.++ .+++.+.|||+++ ++.+ .+|++++. ++|++|+.+|.+|+|
T Consensus 115 ~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~-----~ll~~g~ipVi~~-v~~~-~~g~~~~~---~~D~~Aa~lA~~l~A 184 (269)
T 2egx_A 115 AVKYVENGKVKVHRGDYTGTVEEVNKALLD-----LLLQAGYLPVLTP-PALS-YENEAINT---DGDQIAALLATLYGA 184 (269)
T ss_dssp ---------------CCEECCCEECHHHHH-----HHHHTTCEEEEEC-CEEE-TTSCEEEE---CHHHHHHHHHHHHTC
T ss_pred cccccccccccCCcCCCCCCceEECHHHHH-----HHHHCCCEEEEcC-cEEC-CCCCEEEe---CHHHHHHHHHHHcCC
Confidence 1 233334444333 2457889999996 7777 47887644 499999999999999
Q ss_pred CcEEEeeCCCccccCCCCCCCCCccccccCHHHHH--HHHHcCCCcchHh--HHHHHHhCCC-CEEEecCCCCC------
Q 008693 301 QEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA--ELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN------ 369 (557)
Q Consensus 301 ~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~--eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~------ 369 (557)
+++++||||||||+ ||+ |++++|++++|+|+. +|+.++...|+|+ ++..|.++|+ |++|.|+++|+
T Consensus 185 d~li~lTdVdGv~~-dp~--~~a~~i~~i~~~e~~~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l 261 (269)
T 2egx_A 185 EALVYLSNVPGLLA-RYP--DEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRAL 261 (269)
T ss_dssp SEEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHH
T ss_pred CEEEEEeCchhhhc-CCC--CCccccccCCHHHhhHHHhcCCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHh
Confidence 99999999999999 993 899999999999999 9988899999995 8899999999 99999998885
Q ss_pred -CCCeeEe
Q 008693 370 -APGTLIR 376 (557)
Q Consensus 370 -~~GT~I~ 376 (557)
+.||+|.
T Consensus 262 ~g~GT~i~ 269 (269)
T 2egx_A 262 SGEGTVVR 269 (269)
T ss_dssp TTCSEEEC
T ss_pred CCCCeEEC
Confidence 4688873
No 27
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.93 E-value=3.1e-25 Score=224.42 Aligned_cols=214 Identities=17% Similarity=0.236 Sum_probs=152.0
Q ss_pred eEEEEecccccCC--HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~--~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
++|.||||+++.+ .+.++++++.|....+...+|+|++.|...+.+.+.+
T Consensus 38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~---------------------------- 89 (270)
T 2ogx_B 38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA---------------------------- 89 (270)
T ss_dssp EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence 7999999999998 5899999999987533234444444444443322111
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHH--HHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSR--DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~--d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
.+++.+ .... ....+.| ++..++...|.++|++. +|..++
T Consensus 90 ~~~g~~-------------------------~~~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d~- 131 (270)
T 2ogx_B 90 AGLGLP-------------------------AGVLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAGL- 131 (270)
T ss_dssp HHTTCC-------------------------HHHHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSSTT-
T ss_pred HhcCCC-------------------------hHHHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhhH-
Confidence 112221 1111 2234444 56667778888889872 222222
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCC---CcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgR---gGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
..+. .+++.+.|||++||.|.+. ....++.|+ +++|++|+.+|.+|+|+++++||||||||+
T Consensus 132 ---------~~i~-----~lL~~g~ipVi~g~~g~~~-~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~ 196 (270)
T 2ogx_B 132 ---------SAVP-----LSLAEVNAVVFSGMPPYKL-WMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYT 196 (270)
T ss_dssp ---------CHHH-----HHCTTCCEEEEECSCTTGG-GCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEES
T ss_pred ---------HHHH-----HHHhCCCEEEEeCCccccc-cccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccC
Confidence 2222 2457899999999987652 122223444 789999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHh--CCCCEEEecCCCCC---------CCCeeEec
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE--GDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~--~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
+||+.+|++++|++++|+|+.+++..| +++|+.....+.. .++|++|.|+++|+ ..||+|.+
T Consensus 197 ~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 197 ANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp SCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 999999999999999999999998755 6889876666655 57899999998885 57999864
No 28
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.93 E-value=3.4e-26 Score=228.83 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=152.8
Q ss_pred ceEEEEecccccC-----CHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLA-----SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 81 ~~~V~KFGGsSv~-----~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
+++|.||||+++. +.+.++++++.|.... ..++|+|+|+ | ....+..
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgG-g-~~~~~~~------------------------- 54 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSA-A-ISAGHTK------------------------- 54 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECC-H-HHHHHHH-------------------------
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC-H-HHHHHHH-------------------------
Confidence 4699999999999 8899999999988742 2344555543 2 3221111
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
++.+. ......+.+.+.|+....+++..+|+++|+++..+ .++.+
T Consensus 55 -------~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~ 99 (251)
T 2ako_A 55 -------LDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGK 99 (251)
T ss_dssp -------CCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTG
T ss_pred -------hCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------Eeccc
Confidence 11110 01122367888999999999999999999997632 34444
Q ss_pred CCCCceeeecchHHHHH-HHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 235 DFTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~-~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+|.. ++ .++.. .....+++.+.|||++|+-+.. .++. .++++|++|+.+|.+|+|+++++||||||||
T Consensus 100 ~~~~-~~-----~~~~~~~~i~~ll~~g~ipVi~~~d~v~--~~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy 168 (251)
T 2ako_A 100 DFDS-RK-----ATKHAKNAIDMMINLGILPIINENDATA--IEEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFY 168 (251)
T ss_dssp GGGC-HH-----HHHHHHHHHHHHHHTTCEEEEEECTTTC--CHHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCB
T ss_pred hhcC-cc-----eEehHHHHHHHHHHCCCEEEEeCCCcee--ecce---eecCchHHHHHHHHhcCCCEEEEEeCCCcee
Confidence 4421 11 12211 2333456789999999753222 1222 4678999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHH--HHHHHHH-----cCCCcch--HhHHHHHHhCCCCEEEecCCCC
Q 008693 314 TCDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQVLH--PQSMRPAREGDIPVRVKNSYNP 368 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~--Ea~eLa~-----~Ga~vlh--p~a~~~a~~~~Ipv~I~n~~~p 368 (557)
++||+++|++++|+++||+ |+.+++. +|...|+ ++++.+|.++|+|++|.|+++|
T Consensus 169 ~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 169 DKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp SSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred eCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 9999999999999999999 9999976 6777665 4589999999999999998776
No 29
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.93 E-value=1.6e-25 Score=231.82 Aligned_cols=238 Identities=19% Similarity=0.300 Sum_probs=173.9
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
++++|.||||+++.+++.++++++.|.... +.++|+|+|+ |...+.+++.
T Consensus 49 ~k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~--------------------------- 100 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGG-GPEINAWLGR--------------------------- 100 (321)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH---------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHH---------------------------
Confidence 467999999999999988999998887642 3455556554 5555555432
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (557)
++.+. ++.+|+ +..++...|.+ ++.|+ ++.. +...|+.+|++++.+++.+.+++++.
T Consensus 101 ----~g~~~-----------~~~~g~---Rvt~~~~l~~~~~~~~G~-in~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~ 160 (321)
T 2v5h_A 101 ----VGIEP-----------QFHNGL---RVTDADTMEVVEMVLVGR-VNKD-IVSRINTTGGRAVGFCGTDGRLVLARP 160 (321)
T ss_dssp ----TTCCC-----------CBSSSS---BCBCHHHHHHHHHHHHHT-HHHH-HHHHHHHHTCCEEEECTTGGGSEEEEE
T ss_pred ----cCCCc-----------cccCCc---ccCCHHHHHHHHHHHhCh-HHHH-HHHHHHhCCCCeeeeChhhccEEEeec
Confidence 11110 001111 12234555554 23574 4654 67789999999999998876666664
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+++. .++...+.+.+++ +++.|.|||+++ ++.+ ..|+..+++ +|++|+.+|.+|+|++++|+|||
T Consensus 161 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDV 230 (321)
T 2v5h_A 161 HDQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDT 230 (321)
T ss_dssp CSSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESS
T ss_pred CCCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCC
Confidence 4554 2344444443332 357899999996 5777 478776554 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (557)
||||++||+ ++++|++|+++|+.+++..| ...|+|| ++..|.++|+| ++|.|+..|+ ..||+
T Consensus 231 dGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 307 (321)
T 2v5h_A 231 RGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTM 307 (321)
T ss_dssp SSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEE
T ss_pred CceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceE
Confidence 999999998 69999999999999998864 6789985 88999999999 9999977664 56999
Q ss_pred EecC
Q 008693 375 IRRS 378 (557)
Q Consensus 375 I~~~ 378 (557)
|.+.
T Consensus 308 I~~~ 311 (321)
T 2v5h_A 308 IVGS 311 (321)
T ss_dssp EECC
T ss_pred EECC
Confidence 9765
No 30
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.93 E-value=5e-25 Score=222.68 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCC--Ccee
Q 008693 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT 280 (557)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~--G~~t 280 (557)
.+|+. +.++|+++|++++.+++.+.++++. +++...+...+.. +++++.|||++||++.+ .+ |.++
T Consensus 89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~~~g~~~ 156 (269)
T 3ll9_A 89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRS-----YLEEGMVPVVYGDVVLD-SDRRLKFS 156 (269)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHH-----HHHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHH-----HHHCCCEEEECCCEEec-ccccCcce
Confidence 67885 6778999999999999999877652 4555555554443 35689999999999987 47 8888
Q ss_pred ecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHH-----cCCCcchHh--HHHHH
Q 008693 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPA 353 (557)
Q Consensus 281 tlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~-----~Ga~vlhp~--a~~~a 353 (557)
+++ +|++|+++|.+|+|+++++||||||||++||+++|++++|++++++|+.++.. .+...|.|| +...+
T Consensus 157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a 233 (269)
T 3ll9_A 157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLL 233 (269)
T ss_dssp EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHH
T ss_pred ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHH
Confidence 886 99999999999999999999999999999999999999999999999987743 344567776 56666
Q ss_pred HhCCCCEEEecCCCCC---------CC-CeeEe
Q 008693 354 REGDIPVRVKNSYNPN---------AP-GTLIR 376 (557)
Q Consensus 354 ~~~~Ipv~I~n~~~p~---------~~-GT~I~ 376 (557)
.++|+|++|.|...|+ .. ||+|.
T Consensus 234 ~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 7899999999987774 34 88886
No 31
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.93 E-value=9.4e-26 Score=229.95 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=156.0
Q ss_pred ceEEEEecccccCCHH--------HHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 81 LTCVMKFGGSSLASAE--------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~--------~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
+++|.||||+++.+++ .++++++.|.... +.+++||||++|...+.+++...
T Consensus 24 ~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~------------------ 85 (286)
T 3d40_A 24 DFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHD------------------ 85 (286)
T ss_dssp SEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC---------------------------
T ss_pred CEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcC------------------
Confidence 4799999999999864 8999998888653 22257777999988877654211
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.+ .... +...+.|+......+..+|+++|+++..+.+.+..+
T Consensus 86 -------------~~---------------------~~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~ 127 (286)
T 3d40_A 86 -------------ST---------------------HAFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCT 127 (286)
T ss_dssp -------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEE
T ss_pred -------------CC---------------------cccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCc
Confidence 00 0011 112333434445578888999999999999888754
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHH-cCcCcEEEeeCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKDV 309 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~-L~A~~l~i~TDV 309 (557)
|.+ + +.......++. +++.+.|||++||++.+ .+|+. .++++|++|+++|.+ |+|++|+|||||
T Consensus 128 -t~d--g---~~~~~~~~i~~-----lL~~g~IpVi~gd~~~~-~~g~~---~~~~~D~~Aa~lA~~~l~Ad~LiilTDV 192 (286)
T 3d40_A 128 -LRN--G---IPQLRSEVLRD-----VLDHGALPVLAGDALFD-EHGKL---WAFSSDRVPEVLLPMVEGRLRVVTLTDV 192 (286)
T ss_dssp -EET--T---EEEECCSHHHH-----HHHTTCEEEEECEEEEB-TTSCE---EEECGGGHHHHTTTTCCSCEEEEEEESS
T ss_pred -ccC--C---eEEehHHHHHH-----HHHCcCEEEEcCCeEEc-CCCCE---EeeCHHHHHHHHHHhhCCCCEEEEecCC
Confidence 433 2 33333333332 35688999999988887 46775 455699999999999 999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchH--hHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHP--QSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
||||++||+ ++++|++|+++|+.+|.. ++...|+| +++..|.++|+|++|.|+++|+....+++
T Consensus 193 dGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t 266 (286)
T 3d40_A 193 DGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTA 266 (286)
T ss_dssp SSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGS
T ss_pred CeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhc
Confidence 999999999 899999999988777632 46689999 58899999999999999988865544444
No 32
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.92 E-value=2.2e-24 Score=221.26 Aligned_cols=235 Identities=20% Similarity=0.309 Sum_probs=171.7
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
++++|.||||+++.+++.++.+++.|.... +.++|+|+|+ |...+.+++..
T Consensus 26 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~~-------------------------- 78 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG-GPQIGDLLKRL-------------------------- 78 (300)
T ss_dssp TCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECC-cHHHHHHHHHc--------------------------
Confidence 467999999999999988999998887642 3455566654 65555554321
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (557)
+.+. ++.+|+ +..++...|.+ ++.|+. ...+...|+.+|++++.+++.+.+++++.+
T Consensus 79 -----g~~~-----------~~~~g~---rvt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~ 137 (300)
T 2buf_A 79 -----SIES-----------HFIDGM---RVTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKK 137 (300)
T ss_dssp -----TCCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEE
T ss_pred -----CCCc-----------cccCCe---ecCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeee
Confidence 1110 001111 11234555554 335765 556788899999999999988777776542
Q ss_pred -----------------CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHH
Q 008693 236 -----------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (557)
Q Consensus 236 -----------------~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~ 297 (557)
++. .++...+...++ .+++.+.|||+++ ++.+ +.|+..+++ +|++|+.+|.+
T Consensus 138 ~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~ 207 (300)
T 2buf_A 138 LTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN-----MLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEA 207 (300)
T ss_dssp CCCCCC--------CCCCBSBEEEEEECHHHHH-----HHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHH
T ss_pred ccccccchhhcccccccCCcceeEEEECHHHHH-----HHHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHH
Confidence 322 233344544333 2457899999996 5777 478888886 99999999999
Q ss_pred cCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCC---
Q 008693 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN--- 369 (557)
Q Consensus 298 L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~--- 369 (557)
|+|+.+++||||||||++ ++++|++++++|+.+++..| ...|+| +++..+.++|+| ++|.|+..|+
T Consensus 208 l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll 281 (300)
T 2buf_A 208 LKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVL 281 (300)
T ss_dssp HTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHH
T ss_pred cCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHH
Confidence 999999999999999997 38999999999999998864 578999 588899999999 9999877664
Q ss_pred -------CCCeeEecC
Q 008693 370 -------APGTLIRRS 378 (557)
Q Consensus 370 -------~~GT~I~~~ 378 (557)
..||+|.+.
T Consensus 282 ~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 282 LEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHSSTTCCSEEEECC
T ss_pred HHHhcCCCCceEEEeC
Confidence 479999764
No 33
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.91 E-value=2.8e-24 Score=217.71 Aligned_cols=227 Identities=17% Similarity=0.228 Sum_probs=165.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+++|.||||+++.+. ++++++.|... .+.++|+|+|++..++..|.+++
T Consensus 37 k~iVIKiGGs~l~~~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg--------------------------- 87 (279)
T 3l86_A 37 DIIVIKIGGVASQQL--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQ--------------------------- 87 (279)
T ss_dssp CEEEEEECTTGGGSC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT---------------------------
T ss_pred ceEEEEEChHHHHhH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcC---------------------------
Confidence 479999999999873 56666666553 24566777776545655544332
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~--s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
.++ ++.+|+++ .+++..+.+- .+| .++. .+.+.|++.|+++..+++.+.+++|.+++
T Consensus 88 -----~~~-----------~~~~G~Rv---td~~~l~~v~~~l~G-~ln~-~i~~~L~~~G~~a~~l~g~dg~llta~~~ 146 (279)
T 3l86_A 88 -----VPV-----------KKINGLRV---TSKDDMVLVSHALLD-LVGK-NLQEKLRQAGVSCQQLKSDIKHVVAADYL 146 (279)
T ss_dssp -----CCC-----------CEETTEEC---BCHHHHHHHHHHHHH-TTHH-HHHHHHHHTTCCEEECSGGGGGTEEEEES
T ss_pred -----CCC-----------ccCCCccc---CcHHHHHHHHHHHHH-HHHH-HHHHHHHhCCCCEEEEecCcCCEEEeecc
Confidence 110 01112211 1233333331 123 2334 46678999999999999999989998744
Q ss_pred -----CC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 237 -----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 237 -----~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
++ +++...+.+.+++ +++.+.|||++| ++.+ .+|+.++++ +|++|+.+|.+|+|++++||||||
T Consensus 147 ~~~d~g~vG~i~~v~~~~i~~-----lL~~g~IPVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTDVd 216 (279)
T 3l86_A 147 DKDTYGYVGDVTHINKRVIEE-----FLENRQIPILAS-LGYS-KEGDMLNIN---ADYLATAVAVALAADKLILMTNVK 216 (279)
T ss_dssp CHHHHBSBEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CccccCcccccchhhHHHHHH-----HHhCCcEEEECC-cEEC-CCCCEeecC---HHHHHHHHHHHcCCCEEEEEeCCC
Confidence 33 5666666655543 356889999999 8888 479998886 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCCCCCeeEec
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPNAPGTLIRR 377 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~~~GT~I~~ 377 (557)
|||+ ++++|++++++|+.+++..| ...|.| +++..|.++|+| ++|.|+|.+ ||+|..
T Consensus 217 GV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~---GT~i~~ 278 (279)
T 3l86_A 217 GVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT---GTLITA 278 (279)
T ss_dssp SCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC---SEEEEC
T ss_pred cccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC---CeEEec
Confidence 9994 47899999999999998754 467777 588899999999 999999975 999975
No 34
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.91 E-value=5.9e-24 Score=219.42 Aligned_cols=237 Identities=16% Similarity=0.121 Sum_probs=161.4
Q ss_pred ceEEEEecccccC--CH--------HHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 81 LTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 81 ~~~V~KFGGsSv~--~~--------~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
+++|+||||+++. +. +.++++++.|.... +.++|+|+|++..+++.|.+.....
T Consensus 3 k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~-------------- 68 (314)
T 1e19_A 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ-------------- 68 (314)
T ss_dssp CEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--------------
T ss_pred CEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc--------------
Confidence 5799999999999 54 58888888887642 4467778877777777776542210
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhch---HHHHHHHHHHHHHcCCce---
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA--- 220 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~--s~GE---~lsa~ll~~~L~~~Gi~a--- 220 (557)
++ + .+...+ .+.+. ..|+ .+ ..++...|++.|+++
T Consensus 69 -----------------------------~~-~---~~~~~~---l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~~~ 111 (314)
T 1e19_A 69 -----------------------------AT-Y---GIPAQP---MDVAGAMSQGWIGYMI-QQALKNELRKRGMEKKVV 111 (314)
T ss_dssp -----------------------------HH-H---CCCCCC---HHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCCEE
T ss_pred -----------------------------cc-C---CCChhH---HHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchhhh
Confidence 00 0 011112 22332 2243 55 556778899999987
Q ss_pred -----EEecccee----------EEEEecC-------C------------CCc-----eeeecchHHHHHHHhhchhcCC
Q 008693 221 -----RQYDAFDI----------GFITTDD-------F------------TNA-----DILEATYPAVAKRLHGDWITDL 261 (557)
Q Consensus 221 -----~~l~~~~~----------~iit~~~-------~------------~~a-----~i~~~~~~~v~~~l~~~ll~~~ 261 (557)
+.+++.|. ++++.++ + .+. .+...+...++ .+++.+
T Consensus 112 ~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i~-----~lL~~g 186 (314)
T 1e19_A 112 TIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIK-----KLVERG 186 (314)
T ss_dssp EBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHH-----HHHHTT
T ss_pred hhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHHH-----HHHHCC
Confidence 56666652 2332110 1 111 02223333332 346789
Q ss_pred ceEEEcCCCcccC-CCCceeecCC---CcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHH
Q 008693 262 AIPIVTGFLGKAW-RTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL 337 (557)
Q Consensus 262 ~vpVv~Gfig~~~-~~G~~ttlgR---gGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eL 337 (557)
.|||++||.|.+. .+... ++|+ +++|++|+.+|.+|+|+++++||||||||++|| .|++++|++++++|+.++
T Consensus 187 ~IpV~~Gg~giPi~~~~d~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~~ 263 (314)
T 1e19_A 187 VIVIASGGGGVPVILEDGE-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKY 263 (314)
T ss_dssp CEEECSGGGCEEEEEETTE-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHH
T ss_pred CEEEEeCCCccCeEECCCC-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHHH
Confidence 9999998755431 01122 4564 889999999999999999999999999999999 489999999999999999
Q ss_pred HHcCC---CcchHh---HHHHHHhCCCCEEEec------CCCCCCCCeeEec
Q 008693 338 AYFGA---QVLHPQ---SMRPAREGDIPVRVKN------SYNPNAPGTLIRR 377 (557)
Q Consensus 338 a~~Ga---~vlhp~---a~~~a~~~~Ipv~I~n------~~~p~~~GT~I~~ 377 (557)
+..|. ..|+|| |++.+.+.++|++|.| .++. ..||+|.+
T Consensus 264 ~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 264 YEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred HhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence 88654 678998 6777888999999987 3333 47999863
No 35
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=99.90 E-value=2.3e-23 Score=198.45 Aligned_cols=152 Identities=26% Similarity=0.375 Sum_probs=129.6
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc--C-----ceeEEEeCCchhhhHHHHHHH
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--E-----VSLSLTLDPSKLWSRELIQQE 454 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS--e-----~sIS~~I~~~~~~~~~~~~~~ 454 (557)
++..|++|+.++|+++|++.+ |.+.+|+++++|+.|+++||+|+||+|+ + .+++|+++.++.... .+.
T Consensus 3 e~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a---~~~ 77 (181)
T 3s1t_A 3 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAA---VEK 77 (181)
T ss_dssp -CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHH---HHH
T ss_pred CCCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHH---HHH
Confidence 346799999999999999995 8899999999999999999999999853 3 479999998875421 223
Q ss_pred HHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008693 455 LDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 455 l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH 533 (557)
++.+..++ ....+++.+++++|++||. |...||+++++|++|+++||||.||++ |+.+||++|+++|.++|+++||
T Consensus 78 L~~~~~el-~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Ist--Sei~Is~vV~~~d~~~Av~aLH 154 (181)
T 3s1t_A 78 LDSLRNEI-GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLCRDTELDKAVVALH 154 (181)
T ss_dssp HHHTHHHH-CCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhc-CcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEc--CCCEEEEEEeHHHHHHHHHHHH
Confidence 44443444 2467888899999999997 788999999999999999999999995 8999999999999999999999
Q ss_pred HHhccCcc
Q 008693 534 ETFFESDL 541 (557)
Q Consensus 534 ~~f~~~~~ 541 (557)
++|+....
T Consensus 155 ~~f~l~~~ 162 (181)
T 3s1t_A 155 EAFGLGGD 162 (181)
T ss_dssp HHHTCCC-
T ss_pred HHHcCCCC
Confidence 99998753
No 36
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=99.90 E-value=5.2e-23 Score=193.47 Aligned_cols=148 Identities=24% Similarity=0.404 Sum_probs=127.7
Q ss_pred ceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-------CceeEEEeCCchhhhHHHHHHHHH
Q 008693 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQELD 456 (557)
Q Consensus 384 ~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-------e~sIS~~I~~~~~~~~~~~~~~l~ 456 (557)
..|++|+.++|+++|++.+ +.+.||+++++|+.|+++||+|+|++++ +.+++|+++.++.... .+.|+
T Consensus 5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a---~~~L~ 79 (167)
T 2dt9_A 5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEA---LEALE 79 (167)
T ss_dssp CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHH---HHHHH
T ss_pred CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHH---HHHHH
Confidence 3699999999999999996 6788999999999999999999999877 5689999988765322 23455
Q ss_pred HHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 457 HVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 457 ~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
.+..++. + .+.+.+++++|++||. |...||+++++|++|+++||||+||++ |+.+|+++|+++|.++|+++||++
T Consensus 80 ~~~~~~~-~-~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vv~~~d~~~Av~~Lh~~ 155 (167)
T 2dt9_A 80 PVLAEIG-G-EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT--SEVRISVIIPAEYAEAALRAVHQA 155 (167)
T ss_dssp HHHHHHC-C-EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHhC-C-cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc--cCCEEEEEEeHHHHHHHHHHHHHH
Confidence 5555565 3 7888899999999997 888999999999999999999999985 899999999999999999999999
Q ss_pred hccCc
Q 008693 536 FFESD 540 (557)
Q Consensus 536 f~~~~ 540 (557)
|+.+.
T Consensus 156 f~~~~ 160 (167)
T 2dt9_A 156 FELDK 160 (167)
T ss_dssp TC---
T ss_pred HcCCc
Confidence 99763
No 37
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.90 E-value=5e-23 Score=205.82 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=145.5
Q ss_pred CcceEEEEecccccCCH--------HHHHHHHHHHHcCCCCccE-EEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHH
Q 008693 79 KQLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~--------~~~~~va~iI~~~~~~~~v-vVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~ 149 (557)
+|+++|.||||+++.++ +.++++++.|.. +.++| +|+++ |...+.+++.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~~------------------- 59 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAME------------------- 59 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHHH-------------------
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHHH-------------------
Confidence 47889999999999986 489999999986 55666 67666 6555554321
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeE
Q 008693 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (557)
Q Consensus 150 ~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (557)
++.++.... -+ -. ..+..++.++ .+|+.++ .+|+++|+++..+++.+.+
T Consensus 60 ------------~gi~~~~~~--~d-----~~--------gl~~t~~~~~---~ln~~~v-~~l~~~G~~a~~l~~~~~~ 108 (249)
T 3ll5_A 60 ------------FGLPGPKNP--RS-----SI--------GYSIVHRDME---NLDLMVI-DAMIEMGMRPISVPISALR 108 (249)
T ss_dssp ------------HTCSEECCH--HH-----HH--------HHHHHHHHHH---HHHHHHH-HHHHHTTCCEEECCGGGSC
T ss_pred ------------hCCCcCCCc--cc-----cc--------cHHHHHHHHH---HHHHHHH-HHHHHCCCcEEEEcHHHcc
Confidence 111110000 00 00 0112222222 7888877 7899999999999998864
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 230 iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+ .+++ +...+. .+++++.|||++|+++.+ .+|..++++ +|++|+.+|.+|+|+++++||||
T Consensus 109 ~-------~g~v---~~~~i~-----~ll~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdv 169 (249)
T 3ll5_A 109 Y-------DGRF---DYTPLI-----RYIDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDV 169 (249)
T ss_dssp B-------SSSB---CCHHHH-----HHHHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred c-------ccEE---cHHHHH-----HHHHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCC
Confidence 3 1233 333332 235789999999988766 356665554 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHH--HcCCCcchHh--HHHHH-HhCCCCEEEecCCCC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELA--YFGAQVLHPQ--SMRPA-REGDIPVRVKNSYNP 368 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa--~~Ga~vlhp~--a~~~a-~~~~Ipv~I~n~~~p 368 (557)
||||++||+.+|+++++++++ +++..+. .++...|.|| +...+ .++|++++|.|..+|
T Consensus 170 dGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~ 232 (249)
T 3ll5_A 170 DGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHP 232 (249)
T ss_dssp SSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCEEEEETTSG
T ss_pred CccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCCh
Confidence 999999999999999999995 3332221 2345677887 44444 889999999987665
No 38
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=99.87 E-value=5.7e-22 Score=186.40 Aligned_cols=149 Identities=21% Similarity=0.362 Sum_probs=125.4
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-----CceeEEEeCCchhhhHHHHHHHHH
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQELD 456 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-----e~sIS~~I~~~~~~~~~~~~~~l~ 456 (557)
++..|+||+.++|+++|++.+ |.+.||+++++|+.|+++||+|++++++ +.+++|+++.++.... .+.++
T Consensus 12 ~~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a---~~~l~ 86 (167)
T 2re1_A 12 ERAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQT---LEILS 86 (167)
T ss_dssp ---CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHH---HHHHH
T ss_pred cCCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHH---HHHHH
Confidence 345799999999999999997 8899999999999999999999999887 7789999998764321 12233
Q ss_pred HHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 457 HVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 457 ~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
.+..++. ...+...+++++|+++|. |...||+++++|++|+++||||.++++ |+.+++++|+++|.++|+++||++
T Consensus 87 ~~~~~l~-~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist--se~~is~vv~~~d~~~av~~Lh~~ 163 (167)
T 2re1_A 87 ERQDSIG-AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST--SEIKVSVLIDEKYMELATRVLHKA 163 (167)
T ss_dssp HSSTTTT-CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHcC-CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc--ccCEEEEEEeHHHHHHHHHHHHHH
Confidence 2222233 345777889999999997 888999999999999999999999984 999999999999999999999999
Q ss_pred hcc
Q 008693 536 FFE 538 (557)
Q Consensus 536 f~~ 538 (557)
|+.
T Consensus 164 f~l 166 (167)
T 2re1_A 164 FNL 166 (167)
T ss_dssp TTC
T ss_pred hcC
Confidence 985
No 39
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=99.87 E-value=6.1e-22 Score=188.14 Aligned_cols=149 Identities=24% Similarity=0.362 Sum_probs=124.6
Q ss_pred cceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-------CceeEEEeCCchhhhHHHHHHHH
Q 008693 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQEL 455 (557)
Q Consensus 383 ~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-------e~sIS~~I~~~~~~~~~~~~~~l 455 (557)
+..|+||+.++|+++|++.+ +.+.||+++++|+.|+++||+|++++++ +.+++|+++.++.... .+.+
T Consensus 3 ~~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a---~~~l 77 (178)
T 2dtj_A 3 EAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRA---MEIL 77 (178)
T ss_dssp -CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHH---HHHH
T ss_pred CCcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHH---HHHH
Confidence 34699999999999999985 5788999999999999999999999876 6779999987654221 1122
Q ss_pred HHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008693 456 DHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534 (557)
Q Consensus 456 ~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~ 534 (557)
+++..++. ...++..+++++|++||. |...||+++|+|++|+++||||.||+ +|+.+|+|+|+++|.++|+++||+
T Consensus 78 ~~~~~~~~-~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av~~Lh~ 154 (178)
T 2dtj_A 78 KKLQVQGN-WTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHE 154 (178)
T ss_dssp HTTTTTTT-CSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhcC-CCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHH
Confidence 22222222 345788899999999997 88899999999999999999999998 489999999999999999999999
Q ss_pred HhccC
Q 008693 535 TFFES 539 (557)
Q Consensus 535 ~f~~~ 539 (557)
+|+.+
T Consensus 155 ~F~l~ 159 (178)
T 2dtj_A 155 QFQLG 159 (178)
T ss_dssp HHTCC
T ss_pred HHccC
Confidence 99975
No 40
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.85 E-value=6.9e-21 Score=205.99 Aligned_cols=234 Identities=18% Similarity=0.132 Sum_probs=165.4
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|.||||+++.+++ ++++++.|.... ....+|+|+++|..++.+++...
T Consensus 43 ~~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~-------------------------- 95 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQG-------------------------- 95 (456)
T ss_dssp TCEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTT--------------------------
T ss_pred CCEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCC--------------------------
Confidence 46799999999999876 788888887642 23345556666766665543211
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCce----EEeccceeEEEEe
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITT 233 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a----~~l~~~~~~iit~ 233 (557)
... ++.+|+ +..++...+.+ .+.| .++..+ .+.|+ +|+++ +.+++.+.++++.
T Consensus 96 -----~~~-----------~~~~g~---r~t~~~~l~~~~~~~G-~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~ 153 (456)
T 3d2m_A 96 -----RTP-----------HYCRGL---RVTDETSLGQAQQFAG-TVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTA 153 (456)
T ss_dssp -----CCC-----------CCGGGC---CCBCHHHHHHHHHHHH-HHHHHH-HHHHH-TC--------CCCEECCSCEEE
T ss_pred -----CCC-----------EeeCCe---ecCCHHHHHHHHHHHh-HHHHHH-HHHHh-cccccCCCccceeeccCcEEEE
Confidence 100 011121 12245555655 3346 666655 55788 99998 8888888778876
Q ss_pred cCC--------CC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEE
Q 008693 234 DDF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (557)
Q Consensus 234 ~~~--------~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~ 304 (557)
... +. .++...+...+.+ +++.|.|||++++ +.+ .+|+.++++ +|++|+.+|.+|+|+.++
T Consensus 154 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li 223 (456)
T 3d2m_A 154 RPIGVIDGTDMEYAGVIRKTDTAALRF-----QLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLV 223 (456)
T ss_dssp EECCEETTEECBTBEEEEEECHHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEE
T ss_pred EEcccccCcccCceeeEEEECHHHHHH-----HHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 543 22 3444455544432 4578999999986 666 479988886 999999999999999999
Q ss_pred EeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCC----------CCC
Q 008693 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAP 371 (557)
Q Consensus 305 i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~ 371 (557)
|+|||||||++ ++++|++++++|+.+++..|...|.|| ++..+.++|++ ++|.|...| +..
T Consensus 224 ~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~ 297 (456)
T 3d2m_A 224 YLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGI 297 (456)
T ss_dssp EEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCS
T ss_pred EEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCC
Confidence 99999999986 588999999999999988888889994 78888899996 999886554 346
Q ss_pred CeeEecC
Q 008693 372 GTLIRRS 378 (557)
Q Consensus 372 GT~I~~~ 378 (557)
||+|.++
T Consensus 298 GT~i~~~ 304 (456)
T 3d2m_A 298 GTSIAKE 304 (456)
T ss_dssp SEEEECC
T ss_pred ceeeecc
Confidence 8988754
No 41
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.84 E-value=3.2e-21 Score=197.52 Aligned_cols=233 Identities=20% Similarity=0.338 Sum_probs=164.7
Q ss_pred CcceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
+++++|.||||+.+.+ .++++++.|... .+.++|+|+++ |...+++++.
T Consensus 47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~VvVHGg-G~~i~~~l~~-------------------------- 97 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLHGT-GPQVNGRLEA-------------------------- 97 (307)
T ss_dssp CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEEEEECC-HHHHHHHHHH--------------------------
T ss_pred CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHH--------------------------
Confidence 5578999999986653 478888888754 24566666654 5555555432
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (557)
++.++ ++.+|++++ +++..+.+ +.+| .+|..| .+.|++.|++|+.+++ ++++..
T Consensus 98 -----~gi~~-----------~~~~G~RvT---d~~~l~vv~m~~~-~vn~~l-v~~L~~~G~~Av~l~g---g~~~a~~ 153 (307)
T 3zzh_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADY 153 (307)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeeEEcC---CcEEEEe
Confidence 12111 123344333 45666665 3467 578776 4679999999999987 345554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+|+ .+++.+.+.+.++.. +++|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++++|||
T Consensus 154 ~~~~d~g~~G~i~~v~~~~i~~l-----L~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV 223 (307)
T 3zzh_A 154 LDKDKYKLVGNIKSVTKEPIEAS-----IKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (307)
T ss_dssp SCHHHHBSBEEEEEECCHHHHHH-----HHHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCccccCccccccccCHHHHHHH-----HHCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence 344 367777777766543 467899999996 777 479998886 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecCC-------CCCCCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNSY-------NPNAPGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~~-------~p~~~GT~ 374 (557)
||||++ |++++|++++++| +.++...| ...|.|| +++.|.+. +.+++|.|.. ..+..||+
T Consensus 224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~ 298 (307)
T 3zzh_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (307)
T ss_dssp CSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEE
T ss_pred cceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEE
Confidence 999986 5799999999976 66776643 3577787 33444443 7899998622 23567999
Q ss_pred EecCC
Q 008693 375 IRRSR 379 (557)
Q Consensus 375 I~~~~ 379 (557)
|.+..
T Consensus 299 I~~~~ 303 (307)
T 3zzh_A 299 IRRGY 303 (307)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98753
No 42
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.83 E-value=2e-20 Score=193.24 Aligned_cols=234 Identities=14% Similarity=0.135 Sum_probs=155.0
Q ss_pred cceEEEEecccccC--CH--------HHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 80 QLTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 80 ~~~~V~KFGGsSv~--~~--------~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
++++|.||||+++. +. +.++++++.|.... ....+|+||++|...+.+++....
T Consensus 4 ~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~--------------- 68 (316)
T 2e9y_A 4 GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEA--------------- 68 (316)
T ss_dssp CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHT---------------
T ss_pred CCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCC---------------
Confidence 35799999999999 64 68889998887653 234567778888777765542110
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-----HhhchHHHHHHHHHHHHHcCCce---
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-----VSFGECMSTRIFAAYLNKIGVKA--- 220 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-----~s~GE~lsa~ll~~~L~~~Gi~a--- 220 (557)
.. +..++...|.+ ...|..++. .+...|...|+++
T Consensus 69 ----------------~~--------------------~~t~~~~l~~~~~~~~G~i~~~l~~-~l~~~l~~~g~~a~~~ 111 (316)
T 2e9y_A 69 ----------------LP--------------------PERPRQPLYIATAMTQAWIGLLLKH-SLEEELRRRGLNVLVP 111 (316)
T ss_dssp ----------------SC--------------------TTSCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCCCCC
T ss_pred ----------------CC--------------------CCCCHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhcCCCcccc
Confidence 00 00011222222 223334564 6778899999998
Q ss_pred -----EEecccee----------EEEEe---c----C--C---CC------------ceeeecchHHHHHHHhhchhcCC
Q 008693 221 -----RQYDAFDI----------GFITT---D----D--F---TN------------ADILEATYPAVAKRLHGDWITDL 261 (557)
Q Consensus 221 -----~~l~~~~~----------~iit~---~----~--~---~~------------a~i~~~~~~~v~~~l~~~ll~~~ 261 (557)
+.+++.|. ++++. + + | ++ ..+...+...++ .+++.+
T Consensus 112 ~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~-----~lL~~g 186 (316)
T 2e9y_A 112 VVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIA-----EASAES 186 (316)
T ss_dssp EECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHH-----HHHHHC
T ss_pred ceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHH-----HHHHCC
Confidence 67777763 23320 0 0 1 11 012223433333 345678
Q ss_pred ceEEEcCCCcc----cCCCCce----eecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHH
Q 008693 262 AIPIVTGFLGK----AWRTCAI----TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333 (557)
Q Consensus 262 ~vpVv~Gfig~----~~~~G~~----ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~E 333 (557)
.|||++|+.|. + ++|.. .++ .+|++|+++|.+|+|+.++++|||||||+ ||+ .|++++|++++++|
T Consensus 187 ~IpI~~g~~g~pv~~~-~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e 260 (316)
T 2e9y_A 187 PAVVALGGGGVPVVER-PGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASE 260 (316)
T ss_dssp SEEEECGGGCEEEEEC-TTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHH
T ss_pred CEEEEECCCCCCeeEC-CCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHH
Confidence 99999986543 3 35532 222 59999999999999999999999999999 885 69999999999999
Q ss_pred HHHHHHcC---CCcchHh--HHHHHHhCCC-CEEEecC------CCCCCCCeeEec
Q 008693 334 AAELAYFG---AQVLHPQ--SMRPAREGDI-PVRVKNS------YNPNAPGTLIRR 377 (557)
Q Consensus 334 a~eLa~~G---a~vlhp~--a~~~a~~~~I-pv~I~n~------~~p~~~GT~I~~ 377 (557)
+.+++..| ...|.|| +...+.++|+ +++|.|. +.. ..||+|.+
T Consensus 261 ~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 261 LKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence 99998743 3557776 5556678899 8999652 121 46888864
No 43
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.83 E-value=6.8e-20 Score=188.74 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred hhcCCceEEEcCCCcccC-C---CCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHH
Q 008693 257 WITDLAIPIVTGFLGKAW-R---TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (557)
Q Consensus 257 ll~~~~vpVv~Gfig~~~-~---~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~ 332 (557)
+++.|.|||++||.|.+. . .|+..++ .+|++|+.+|.+|+||.++++|||||||+ || ..|++++|++++++
T Consensus 178 lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~ 252 (310)
T 2we5_A 178 LIKNDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVA 252 (310)
T ss_dssp HHHTTCEEECCGGGCEEEETTTTEECCCCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHH
T ss_pred HHHCCCEEEEECCCCCCCcCCCCCCcEeec---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHH
Confidence 457899999998866432 1 2333333 39999999999999999999999999999 88 48899999999999
Q ss_pred HHHHHHHcC---CCcchHh--HHHHHHhCCC--CEEEec------CCCCCCCCeeEe
Q 008693 333 EAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKN------SYNPNAPGTLIR 376 (557)
Q Consensus 333 Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n------~~~p~~~GT~I~ 376 (557)
|+.++...| ...|.|| ++..+.++|+ +++|.| .+..+..||+|.
T Consensus 253 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 253 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp HHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred HHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence 999997754 3557776 6667778888 899964 233345688875
No 44
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.82 E-value=2.9e-20 Score=199.74 Aligned_cols=232 Identities=20% Similarity=0.344 Sum_probs=164.3
Q ss_pred CcceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
++.++|+|+||+.+.+ .++++++.|... .+.++|||+ ++|...+.+++.
T Consensus 47 ~~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~VvVH-GgG~~i~~~l~~-------------------------- 97 (464)
T 4ab7_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLH-GTGPQVNGRLEA-------------------------- 97 (464)
T ss_dssp --CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCCEEEE-CCCHHHHHHHHH--------------------------
T ss_pred CCceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeEEEEE-CCcHHHHHHHHH--------------------------
Confidence 3678999999997754 478888887753 245666555 667776766542
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (557)
++.++ ++.+|++++ +++..+.+ +.+| .+|.. +...|++.|++|+++++ ++++.+
T Consensus 98 -----~gi~~-----------~f~~G~RvT---d~~tl~vv~mv~~-~vn~~-lv~~L~~~G~~Avglsg---g~~~a~~ 153 (464)
T 4ab7_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLK-LVTALEQLGVRARPITS---GVFTADY 153 (464)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHH-HHHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHH-HHHHHHhCCCCeEEECC---CcEEEEe
Confidence 22211 123454444 34444443 2346 57876 45679999999999987 355554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+++ .+++.+++...++. +++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++++|||
T Consensus 154 ~~~~d~g~vG~I~~v~~~~I~~-----lL~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV 223 (464)
T 4ab7_A 154 LDKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (464)
T ss_dssp SCTTTTBSBEEEEEECCHHHHH-----HHHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred cCccccCCcCcccccCHHHHHH-----HHHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEecc
Confidence 344 36777777776654 3468899999996 777 479999887 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecC-------CCCCCCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~ 374 (557)
||||++ |++++|++++++| +.+|...| ...|.|| +++.|.+. +.+++|.+. |..++.||+
T Consensus 224 ~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~ 298 (464)
T 4ab7_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (464)
T ss_dssp CSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEE
T ss_pred cccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEecChHHHHHHhcCCCCceE
Confidence 999987 4789999999986 56676543 3568887 45556554 788998762 223567999
Q ss_pred EecC
Q 008693 375 IRRS 378 (557)
Q Consensus 375 I~~~ 378 (557)
|.+.
T Consensus 299 I~~~ 302 (464)
T 4ab7_A 299 IRRG 302 (464)
T ss_dssp EECC
T ss_pred EecC
Confidence 9876
No 45
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.81 E-value=7.8e-20 Score=184.31 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeec
Q 008693 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (557)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttl 282 (557)
.+++. +.++|+++|+++..+++.+.++.+.+ ...+...+.. +++.+.|||++||++.+ .+|.+.++
T Consensus 98 ~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g-------~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~g~~~~~ 163 (266)
T 3k4o_A 98 RFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDK-------LIFDTSAIKE-----MLKRNLVPVIHGDIVID-DKNGYRII 163 (266)
T ss_dssp HHHHH-HHHHHHTTTCCEEEECGGGTCEESSS-------CBCCCHHHHH-----HHHTTCEEEEECEEEEE-SSSCEEEE
T ss_pred HHHHH-HHHHHHHCCCcEEEeeHHHcCcccCc-------eEecHHHHHH-----HHHCCCEEEEeCCEEEc-CCCCeeee
Confidence 47777 57789999999999999998666532 1223333332 35689999999988877 35666544
Q ss_pred CCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchHhHHHHHH
Q 008693 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHPQSMRPAR 354 (557)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp~a~~~a~ 354 (557)
++|++|+.+|.+|+|+++++|||||||| +||++ +++++.+|+.++.. ++...|.||-.....
T Consensus 164 ---~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~ 233 (266)
T 3k4o_A 164 ---SGDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRK 233 (266)
T ss_dssp ---CHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHH
Confidence 4999999999999999999999999999 88865 45555444444432 234457887322222
Q ss_pred hCCCCEEEecCCCCC---------CCCeeEecC
Q 008693 355 EGDIPVRVKNSYNPN---------APGTLIRRS 378 (557)
Q Consensus 355 ~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (557)
-.. +++|.|...|+ ..||+|.+.
T Consensus 234 a~~-~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 234 NKC-RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp TTC-EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred Hhc-CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 223 99999987763 469998763
No 46
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.81 E-value=5e-20 Score=198.23 Aligned_cols=235 Identities=13% Similarity=0.164 Sum_probs=163.2
Q ss_pred CcceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
+++++|+||||+.+. +.++++++.|.... +.++|||++|+..+++.|.+.+
T Consensus 57 ~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~g------------------------- 109 (460)
T 3s6g_A 57 QERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAAD------------------------- 109 (460)
T ss_dssp GGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHS-------------------------
T ss_pred CCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcC-------------------------
Confidence 467899999998543 34788888887542 5678888877554554433321
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEecccee--EEEEec
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITTD 234 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit~~ 234 (557)
.++ ++.+|++++.+.+.....++ +| .+|..|++ +|++.|++|+.+++..+ ..++..
T Consensus 110 -------i~~-----------~f~~G~RvTd~~~l~vv~~~--lg-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~~ 167 (460)
T 3s6g_A 110 -------IPT-----------ERVDGLRVTRDEAMPIIRDT--LT-QANLALVD-AIRDAGGRAAAVPRGVFEADIVDAD 167 (460)
T ss_dssp -------CCC-----------CCCSSSCCBCTTTHHHHHHH--HH-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESCTT
T ss_pred -------CCc-----------cccCCccCCCHHHHHHHHHH--HH-HHHHHHHH-HHHhCCCCceEEecCeEEEEEecCc
Confidence 111 12334555544444444444 36 88988776 79999999999998432 111223
Q ss_pred CCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 235 DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 235 ~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+|+ .+++..++.+.++. +++.|.|||++++ |.+ .+|++++++ +|++|+.+|.+|+|++++++|||||||
T Consensus 168 d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv~ 237 (460)
T 3s6g_A 168 KLGRVGEPRHIHLDLVGS-----AARAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGGLL 237 (460)
T ss_dssp TTBSEEEEEEECCHHHHH-----HHHTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCSCB
T ss_pred ccCccCcceEEcHHHHHH-----HHHCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 555 36777777776654 3468899999985 767 479999887 999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHH-HHHHHHHcC--CCcchHh--HHHHHHhCCCCEEEecCCCC----------CCCCeeEecC
Q 008693 314 TCDPNIHPHAKPVPYLTFD-EAAELAYFG--AQVLHPQ--SMRPAREGDIPVRVKNSYNP----------NAPGTLIRRS 378 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~-Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv~I~n~~~p----------~~~GT~I~~~ 378 (557)
+. ++++|++++.+ |+.+|...| ...|.|+ ++..+.+...++++.+...| ++.||+|.+.
T Consensus 238 ~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 238 DE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp CT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred CC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 84 47899999996 888887643 3466776 55556664324555554444 3579999875
No 47
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.81 E-value=9.5e-20 Score=202.90 Aligned_cols=148 Identities=19% Similarity=0.331 Sum_probs=127.1
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc----------CceeEEEeCCchhhhHHHH
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----------EVSLSLTLDPSKLWSRELI 451 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS----------e~sIS~~I~~~~~~~~~~~ 451 (557)
....|+||++++|++.|++.+ +.+.||+.+++|+.|+++||+||||.++ ..+++|+++.+++..
T Consensus 431 ~~~~v~Gia~~~~~a~i~i~~--~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~---- 504 (600)
T 3l76_A 431 HLPAVRGVALDQDQAQIAIRH--VPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQ---- 504 (600)
T ss_dssp -CCSCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHH----
T ss_pred ccCceEEEEeeCCEEEEEEec--CCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHH----
Confidence 445799999999999999984 8899999999999999999999999765 137999998876542
Q ss_pred HHHHHHHHHHHhh---hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHH
Q 008693 452 QQELDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ 527 (557)
Q Consensus 452 ~~~l~~~~~~l~~---~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~k 527 (557)
...+++++.. ...+.+.+++++||+||. |..+||+++|+|++|+++||||.||++ ||.+||++|+++|.++
T Consensus 505 ---a~~~l~~~~~~~~~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mist--SEi~Is~vV~~~~~~~ 579 (600)
T 3l76_A 505 ---AEAILQPLIKDWLDAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIAT--SEIKISCVVPQDRGVD 579 (600)
T ss_dssp ---HHHHHHHHTTTSTTCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEE--CSSEEEEEEEGGGHHH
T ss_pred ---HHHHHHHHHHhcCCceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEc--CCceEEEEEeHHHHHH
Confidence 1222333332 246888899999999997 889999999999999999999999996 9999999999999999
Q ss_pred HHHHHHHHhccCc
Q 008693 528 CVRALHETFFESD 540 (557)
Q Consensus 528 Av~~LH~~f~~~~ 540 (557)
|+++||++|+++.
T Consensus 580 Av~alh~~F~l~~ 592 (600)
T 3l76_A 580 ALKAAHSAFNLAG 592 (600)
T ss_dssp HHHHHHHHTTTTS
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999764
No 48
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.1e-19 Score=195.85 Aligned_cols=235 Identities=17% Similarity=0.281 Sum_probs=159.8
Q ss_pred CCcceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHH
Q 008693 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (557)
Q Consensus 78 ~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (557)
+++.++|+||||+.+.+ .++++++.|... .+.++|||++|+..+ +.+++.
T Consensus 59 ~~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGgg~~i-~~~l~~------------------------- 110 (467)
T 3s6k_A 59 DAKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGAGPQL-DAELSA------------------------- 110 (467)
T ss_dssp CSTTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCCCHHH-HHHHHT-------------------------
T ss_pred CCCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECCChHH-HHHHHH-------------------------
Confidence 34678999999996554 368888887753 346778777765444 444331
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-hhchHHHHHHHHHHHHHcCCceEEecccee--EEEE
Q 008693 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFIT 232 (557)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~-s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit 232 (557)
++... ++.+|+++ .+++..+.+. .+| .+|..|++ +|++.|++|+.+++..+ ..++
T Consensus 111 ------~gi~~-----------~f~~G~Rv---Td~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~ 168 (467)
T 3s6k_A 111 ------AGIEK-----------QTVNGLRV---TSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLN 168 (467)
T ss_dssp ------TSCCC-----------CCCSSSCC---BCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSC
T ss_pred ------cCCCc-----------cccCCccC---CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEecc
Confidence 11111 11223322 3456666553 357 88998776 79999999999998432 2222
Q ss_pred ecCCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 233 TDDFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 233 ~~~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
..+|+ .+++..++.+.++. +++.|.|||+++ +|.+ .+|+.++++ +|++|+.+|.+|+|++++++|||||
T Consensus 169 ~~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~G 238 (467)
T 3s6k_A 169 RDTYGLVGEVKAVNLAPIEA-----SLQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGG 238 (467)
T ss_dssp SSSSBSBBCCCCBCCHHHHT-----HHHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCS
T ss_pred CcccCccceEEEEcHHHHHH-----HHHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccc
Confidence 33555 36777777765543 356789999995 3445 368888886 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHH-HHHHHHHc--CCCcchHh--HHHHHHhCCCCEEEecCCCCC----------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFD-EAAELAYF--GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN----------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~-Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I~ 376 (557)
||+.| +++|++++.. |+.++... +...|.|+ ++..+.+...++++.+...|+ +.||+|.
T Consensus 239 v~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~ 312 (467)
T 3s6k_A 239 LLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVR 312 (467)
T ss_dssp CCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBC
T ss_pred eeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEe
Confidence 99854 6788999985 77777654 34567776 555566643356766665553 4689887
Q ss_pred cC
Q 008693 377 RS 378 (557)
Q Consensus 377 ~~ 378 (557)
+.
T Consensus 313 ~~ 314 (467)
T 3s6k_A 313 RG 314 (467)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 49
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.59 E-value=1.1e-14 Score=150.36 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=82.7
Q ss_pred chhcCCceEEEcCCCcc--cC----CCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCcccccc
Q 008693 256 DWITDLAIPIVTGFLGK--AW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (557)
Q Consensus 256 ~ll~~~~vpVv~Gfig~--~~----~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~l 329 (557)
.+++++.|||..|.-|. .. .+|...+. ..|++|+.+|.+|+||.++|+|||||||+.+|+ |++++|+++
T Consensus 198 ~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vi---d~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~i 272 (332)
T 4axs_A 198 QNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVI---DKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKTV 272 (332)
T ss_dssp HHHHTTCEEECCGGGCEEEEESSSCEEECSSCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSSC
T ss_pred HhhcCCeEEEecccCCCCccccCCcccCceeee---chHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcccC
Confidence 34577888877543111 10 01233333 389999999999999999999999999999886 789999999
Q ss_pred CHHHHHHHHHcC---CCcchHh--HHHHHHhCC--CCEEEecCCCC-----CCCCeeEe
Q 008693 330 TFDEAAELAYFG---AQVLHPQ--SMRPAREGD--IPVRVKNSYNP-----NAPGTLIR 376 (557)
Q Consensus 330 s~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~--Ipv~I~n~~~p-----~~~GT~I~ 376 (557)
|.+|+.++...| ...|-|| |...+.+.+ .+..|.+..+. ...||+|.
T Consensus 273 t~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv 331 (332)
T 4axs_A 273 DVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII 331 (332)
T ss_dssp BHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred CHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence 999999998754 4569998 444555554 45677642221 13588885
No 50
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.57 E-value=1.6e-14 Score=147.17 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=93.2
Q ss_pred hhchhcCCceEEEcCCCcccC--CCCcee-ecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 254 HGDWITDLAIPIVTGFLGKAW--RTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 254 ~~~ll~~~~vpVv~Gfig~~~--~~G~~t-tlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
++.|++++.|||++||.|... .++..+ +...+.+|++|+.+|.+|+||.++|+|||||||+ ||+ .|++++|++++
T Consensus 181 I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it 258 (317)
T 3kzf_A 181 IKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIK 258 (317)
T ss_dssp HHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEE
T ss_pred HHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcC
Confidence 334567899999998877621 234343 3446779999999999999999999999999999 999 59999999999
Q ss_pred HHHHHHHHHcC---CCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeEec
Q 008693 331 FDEAAELAYFG---AQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRR 377 (557)
Q Consensus 331 ~~Ea~eLa~~G---a~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~ 377 (557)
++|+.++...| ...|.|| |+..+...+.+++|.|..++ ...||+|.+
T Consensus 259 ~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~~GT~I~~ 316 (317)
T 3kzf_A 259 LSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIK 316 (317)
T ss_dssp HHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTSSSEEEEC
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCCCCeEEec
Confidence 99999997643 3568887 44455566788999875332 126898875
No 51
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=99.12 E-value=1.2e-09 Score=99.32 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=85.0
Q ss_pred ccchhhHHHHHHHHHHhCCceEEEEEccC---ce-eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEE
Q 008693 405 MLGQYGFLAKVFSTFEDLGISVDVVATSE---VS-LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLI 480 (557)
Q Consensus 405 m~~~~g~la~If~~L~~~gI~Vd~IstSe---~s-IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIV 480 (557)
+.++||.++++|+.|+++||||++++++. .. +.|+.+..+ .+.+. |+..+ . .....+++
T Consensus 13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~---------~a~~~---L~~~G-~----~v~~~svv 75 (144)
T 2f06_A 13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPD---------KAYKA---LKDNH-F----AVNITDVV 75 (144)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHH---------HHHHH---HHHTT-C----CEEEEEEE
T ss_pred ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHH---------HHHHH---HHHcC-C----eEeeeeEE
Confidence 45689999999999999999999996542 23 456653221 11222 32211 1 12345789
Q ss_pred c-cccccchHHHHHHHHHHhCCCcE-EEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008693 481 G-NVQRSSLILEKAFRVLRRSGVNV-QMISQGASKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 481 G-~~~~~~~v~~rif~~L~~~gInI-~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
| .|.+.||++++++++|+++|||| .+++.. ++..++++++.+|.++|+++||++=
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~g 132 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEKK 132 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHTT
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHcC
Confidence 9 48899999999999999999999 566653 6778899999999999999999973
No 52
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=98.70 E-value=1e-07 Score=89.99 Aligned_cols=101 Identities=17% Similarity=0.287 Sum_probs=80.5
Q ss_pred chHhHHHHHHhCCC--CEEEecCCCCCCCCeeEecCCC--------------CCcceeeEEeeeccEEEEEEEecCccch
Q 008693 345 LHPQSMRPAREGDI--PVRVKNSYNPNAPGTLIRRSRD--------------MSKAVLTSIVLKRNVTMLDIVSTRMLGQ 408 (557)
Q Consensus 345 lhp~a~~~a~~~~I--pv~I~n~~~p~~~GT~I~~~~~--------------~~~~~Vt~Is~~~nialItI~~~~m~~~ 408 (557)
+-.+-+.++.++|| ++.+.|+++|+..+|.|+-.-. ......+.+...+++++|++.|.+|.+.
T Consensus 29 ~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~ 108 (178)
T 2dtj_A 29 EAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSH 108 (178)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcccC
Confidence 33455788899994 5667788887766677752100 0111245788899999999999999999
Q ss_pred hhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 409 YGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 409 ~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
||+++++|+.|+++||||.|+++|+.+++|.++.++.
T Consensus 109 ~Gv~arif~aLa~~~InI~~istSe~~Is~vV~~~d~ 145 (178)
T 2dtj_A 109 PGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 145 (178)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred ccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 9999999999999999999999999999999988764
No 53
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=98.50 E-value=2.6e-07 Score=100.15 Aligned_cols=110 Identities=25% Similarity=0.386 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCceEEEEEcc--CceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccch
Q 008693 412 LAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSL 488 (557)
Q Consensus 412 la~If~~L~~~gI~Vd~IstS--e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~ 488 (557)
..+.+....++||++...+.. +..-|+..+..... -..+..|...+++++|+++|. |...+|
T Consensus 269 ~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~~~---------------~~~v~gIa~~~~~a~Isv~g~~m~~~~G 333 (473)
T 3c1m_A 269 HPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMS---------------DSIVKAISTIKNVALINIFGAGMVGVSG 333 (473)
T ss_dssp CGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCC---------------TTSCCEEEEEEEEEEEEEEECSSSCHHH
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCCceEEEecccccc---------------ccccchhhccCCeEEEEEecCCCCCCcC
Confidence 345666777889998777643 23445555432100 012456788899999999997 788899
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008693 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 489 v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
+++++|++|+++||+|.||+|++|+.+|+|+|+++|.++|++.||++|
T Consensus 334 ~~a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d~~~a~~~L~~~l 381 (473)
T 3c1m_A 334 TAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREF 381 (473)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEechHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999
No 54
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=98.39 E-value=5.9e-07 Score=86.23 Aligned_cols=60 Identities=15% Similarity=0.412 Sum_probs=56.7
Q ss_pred eeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 386 Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
...+...+++++|++.|.+|.+.||+++|+|++|+++||||.||++||.+||+.|++++.
T Consensus 106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~ 165 (200)
T 4go7_X 106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 165 (200)
T ss_dssp CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHH
Confidence 457888999999999999999999999999999999999999999999999999998874
No 55
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=98.28 E-value=9.3e-07 Score=82.35 Aligned_cols=69 Identities=30% Similarity=0.456 Sum_probs=63.2
Q ss_pred hheeecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCC-----ceEEEEEEecccHHHHHHHHHH
Q 008693 465 IAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS-----KVNISLIVNDDEAEQCVRALHE 534 (557)
Q Consensus 465 ~~~i~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsS-----e~sIs~vV~~~d~~kAv~~LH~ 534 (557)
+..|+..+++++|+++| +.+.+|+++++|+.|+++||||.||+|+.+ +.+++|+|+++|.++|.+.|++
T Consensus 7 v~gIa~~~~~a~Itv~g-~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~ 80 (167)
T 2dt9_A 7 VTGVALDLDHAQIGLIG-IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP 80 (167)
T ss_dssp EEEEEEECSEEEEEEEE-EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH
T ss_pred eeEEEEeCCEEEEEEec-CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH
Confidence 56788889999999999 566799999999999999999999999876 7899999999999999999987
No 56
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=98.27 E-value=2.6e-06 Score=79.34 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=72.7
Q ss_pred hHhHHHHHHhCCCCEEEecCCCCCCCC----eeEecCCCC-----------CcceeeEEeeeccEEEEEEEecCccchhh
Q 008693 346 HPQSMRPAREGDIPVRVKNSYNPNAPG----TLIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLGQYG 410 (557)
Q Consensus 346 hp~a~~~a~~~~Ipv~I~n~~~p~~~G----T~I~~~~~~-----------~~~~Vt~Is~~~nialItI~~~~m~~~~g 410 (557)
-.+-+..+.++||++......... .| |++.+..+. ..-.++.+...++++++++.|.+|.+.||
T Consensus 40 ~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~~~G 118 (167)
T 2re1_A 40 AYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRSHVG 118 (167)
T ss_dssp HHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTTCCC
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCCCcC
Confidence 344577788888886655432221 24 233222110 01124678889999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+++++|+.|+++||+|.++++|+.+++|.++.++.
T Consensus 119 v~a~i~~aL~~~~InI~~istse~~is~vv~~~d~ 153 (167)
T 2re1_A 119 VAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYM 153 (167)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred HHHHHHHHHHHCCCcEEEEEcccCEEEEEEeHHHH
Confidence 99999999999999999999999999999988763
No 57
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=98.15 E-value=3.8e-06 Score=79.39 Aligned_cols=59 Identities=15% Similarity=0.407 Sum_probs=55.8
Q ss_pred eEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 387 TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 387 t~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
..|...+++++|++.|.+|.+.||+++++|+.|+++||+|.|+++|+.+|+|.+++++.
T Consensus 88 ~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~ 146 (181)
T 3s1t_A 88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 146 (181)
T ss_dssp SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred ceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHH
Confidence 46788899999999999999999999999999999999999999999999999998874
No 58
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=98.09 E-value=2.9e-06 Score=78.20 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=61.5
Q ss_pred hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEeccc-HHHHHHHHHH
Q 008693 465 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE-AEQCVRALHE 534 (557)
Q Consensus 465 ~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d-~~kAv~~LH~ 534 (557)
+..|+..+++++|++.|. |...+|+++++|+.|+++||+|.||+| |+.+|+|.|++++ ++++++.||+
T Consensus 9 v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~ 78 (157)
T 3mah_A 9 IKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD 78 (157)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT
T ss_pred eEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc
Confidence 567888899999999996 888999999999999999999999998 7889999999998 7778888776
No 59
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=97.66 E-value=9.4e-05 Score=79.32 Aligned_cols=101 Identities=13% Similarity=0.191 Sum_probs=75.8
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCc------------ceeeEEeeeccEEEEEEEecCccchhh
Q 008693 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK------------AVLTSIVLKRNVTMLDIVSTRMLGQYG 410 (557)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~------------~~Vt~Is~~~nialItI~~~~m~~~~g 410 (557)
..+-.+-+..+.+++|++...++. . ..=|+..+..+..+ -....|...+++++|++.|.+|.+.||
T Consensus 312 ~g~~~~if~~l~~~~i~vd~i~~~-~-~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~G 389 (446)
T 3tvi_A 312 VGFCRKILSILEMYGVSFEHMPSG-V-DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKG 389 (446)
T ss_dssp TTHHHHHHHHHHTTTCCEEEBCEE-T-TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEecC-C-CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChh
Confidence 344556788899999998776532 1 11122222211110 013468889999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 411 FLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
+++++|+.|+++||||.||+ +|+.+|+|.|++++.
T Consensus 390 vaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~ 426 (446)
T 3tvi_A 390 IANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDF 426 (446)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGH
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHH
Confidence 99999999999999999999 789999999998874
No 60
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=97.56 E-value=0.00012 Score=78.12 Aligned_cols=98 Identities=18% Similarity=0.347 Sum_probs=73.4
Q ss_pred HhHHHHHHhCCCCEEEec--CCCCCCCC-eeE---ecCCCCC-----------cceeeEEeeeccEEEEEEEecCccchh
Q 008693 347 PQSMRPAREGDIPVRVKN--SYNPNAPG-TLI---RRSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQY 409 (557)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n--~~~p~~~G-T~I---~~~~~~~-----------~~~Vt~Is~~~nialItI~~~~m~~~~ 409 (557)
.+-+..+.++||++.... +.. ...| +.| .+..+.. .-....+...++++++++.|.+|.+.|
T Consensus 280 ~~If~~La~~~I~vd~I~q~~s~-~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~ 358 (421)
T 3ab4_A 280 AKVFRALADAEINIDMVLQNVFS-VEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHP 358 (421)
T ss_dssp HHHHHHHHHTTCCCEEEEECCCC---CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGTSCT
T ss_pred HHHHHHHHHcCCcEEEEEccCcc-ccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcccCc
Confidence 456788899999977553 221 0124 222 2221110 001346788999999999999999999
Q ss_pred hHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 410 g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
|+++++|+.|+++||||.|+++|+.+++|.++.++.
T Consensus 359 Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~~~d~ 394 (421)
T 3ab4_A 359 GVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 394 (421)
T ss_dssp THHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 999999999999999999999999999999998874
No 61
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=97.19 E-value=0.00037 Score=75.94 Aligned_cols=101 Identities=13% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCC--C---c----------ceeeEEeeeccEEEEEEEecCcc
Q 008693 342 AQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM--S---K----------AVLTSIVLKRNVTMLDIVSTRML 406 (557)
Q Consensus 342 a~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~--~---~----------~~Vt~Is~~~nialItI~~~~m~ 406 (557)
...+-.+-+..+.++||++....+. +..=|...+..+. . . ..+..+...+++++|++.|. |.
T Consensus 354 ~~g~~~~if~~la~~~I~vd~I~ss--e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~ 430 (510)
T 2cdq_A 354 QVGFLAKVFSIFEELGISVDVVATS--EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQ 430 (510)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEEEE--TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GG
T ss_pred cccHHHHHHHHHHHcCCcEEEEEeC--CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CC
Confidence 3445567788999999997765432 1111222221110 0 0 11356888999999999999 99
Q ss_pred chhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 407 GQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 407 ~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
+.+|+++++|++|+++||||.||+ +||.+|||.|++++.
T Consensus 431 ~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~ 471 (510)
T 2cdq_A 431 HSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEA 471 (510)
T ss_dssp GHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHH
T ss_pred CChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHH
Confidence 999999999999999999999999 689999999998764
No 62
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.81 E-value=0.055 Score=50.73 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=71.2
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc----cCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeec
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNL 470 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist----Se~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~ 470 (557)
...|++.+. ++||.++++...|+++|+||.-+.+ ....+.+.+.... ...+.+++.|..+..++.-...+.-
T Consensus 6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-~~~~~l~~~L~~~~~~~~~~~~~~~ 81 (192)
T 1u8s_A 6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-SNITRVETTLPLLGQQHDLITMMKR 81 (192)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-HHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-CCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356777763 6899999999999999999987643 2234444453322 1233344455544433321111111
Q ss_pred --------ccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 471 --------LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 471 --------~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
.....+|.+.| .+.||+++++.+.|++.|+||.-+.+.
T Consensus 82 ~~~~~~~~~~~~~~l~v~~--~D~~Gil~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 82 TSPHDHQTHAYTVEVYVES--DDKLGLTEKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp ECCCCCCCCSEEEEEEEEE--SCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCccCCceEEEEEEe--CCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence 01346777777 468999999999999999999876664
No 63
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=96.67 E-value=0.0013 Score=70.48 Aligned_cols=58 Identities=12% Similarity=0.316 Sum_probs=52.9
Q ss_pred eeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 386 Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
+..+...+++++|++.|.+|.+.+|+.+++|+.|++ |+|.||+ +||.+|||.|++++.
T Consensus 377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~ 436 (449)
T 2j0w_A 377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDA 436 (449)
T ss_dssp HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGH
T ss_pred CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHH
Confidence 346888999999999999999999999999999966 9999998 899999999998874
No 64
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.37 E-value=0.068 Score=50.46 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=69.3
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE----ccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh---e
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA----TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIA---I 467 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is----tSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~---~ 467 (557)
...|+|.+. ++||+.+++...|+++|.||.-.. .....+.+.+......... .++.+.+.|.... .
T Consensus 5 ~~~ltv~~~---DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~----~~~~l~~~L~~~~~~~~ 77 (195)
T 2nyi_A 5 SFVVSVAGS---DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKL----IQSALESALPGFQISTR 77 (195)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHH----HHHHHHHHSTTCEEEEE
T ss_pred EEEEEEEeC---CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchh----HHHHHHHHHHHHHHhcC
Confidence 356777764 689999999999999999988653 2233334444322110000 1223333443221 0
Q ss_pred e---------ecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 468 V---------NLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 468 i---------~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
+ .......+|+|.| .+.||+++++.+.|+++|+||.-+.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~iltv~g--~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 78 RASSVAERHVSPDTREYELYVEG--PDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp ECCCC----CCTTEEEEEEEEEE--ECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEEEeCCcCCCCcEEEEEEEe--CCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 1 1123457899998 358999999999999999999988775
No 65
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=94.51 E-value=0.076 Score=47.27 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=36.9
Q ss_pred EEEecCccchhhHHHHHHHHHHhCCceEE-EEEc-cCceeEEEeCCch
Q 008693 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVD-VVAT-SEVSLSLTLDPSK 444 (557)
Q Consensus 399 tI~~~~m~~~~g~la~If~~L~~~gI~Vd-~Ist-Se~sIS~~I~~~~ 444 (557)
++.+.+|.++||.++++|+.|+++||||+ ++++ ++..+++.++.++
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d 120 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN 120 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCC
Confidence 45555688999999999999999999994 5665 6777888876654
No 66
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=94.19 E-value=0.1 Score=46.45 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=69.2
Q ss_pred EEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEE
Q 008693 427 DVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQ 505 (557)
Q Consensus 427 d~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~ 505 (557)
..++.....+|++++.+.+. ..+........|.+.|. .....|+++.+...|+++||.+.
T Consensus 34 ~~is~t~eelSvV~~~~~~p-------------------~~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif 94 (134)
T 1zhv_A 34 VSITRTDDELSIVCLIDRIP-------------------QDVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIF 94 (134)
T ss_dssp CEEEECSSCEEEEEEGGGSC-------------------TTSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCE
T ss_pred EEEEEcCCeEEEEEehhhCc-------------------cCCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeE
Confidence 34555566777777664311 11244567788999886 45778999999999999999999
Q ss_pred EEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 506 MISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 506 ~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
.||+-.++. ++|++++.++|+++|.+..+.
T Consensus 95 ~iSty~tD~---IlVp~~~~~~Ai~aL~~~~~~ 124 (134)
T 1zhv_A 95 VVSTFDGDH---LLVRSNDLEKTADLLANAGHS 124 (134)
T ss_dssp EEECSSCEE---EEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEeccccE---EEEeHHHHHHHHHHHHHcCce
Confidence 999866665 799999999999999987653
No 67
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=94.02 E-value=0.14 Score=45.47 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=64.4
Q ss_pred EEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEE
Q 008693 428 VVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQM 506 (557)
Q Consensus 428 ~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~ 506 (557)
.+......+|++++.+.. .. ..+........|++.|. ...-.|+++.+...|+++||.+..
T Consensus 43 ~i~~t~eelSvV~~~~~a-----------------~~-~~l~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~ 104 (133)
T 1zvp_A 43 ATFREPEGLTLVLEAEKA-----------------QQ-AGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANV 104 (133)
T ss_dssp EEEEETTEEEEEEEHHHH-----------------HH-TTCCCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEE
T ss_pred EEEEcCCcEEEEEchHhc-----------------cc-cCCccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEE
Confidence 455555677888765321 00 12344567889999996 567789999999999999999999
Q ss_pred EEecCCceEEEEEEecccHHHHHHHHH
Q 008693 507 ISQGASKVNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 507 IsqgsSe~sIs~vV~~~d~~kAv~~LH 533 (557)
||+-.+++ ++|++++.++|+++|.
T Consensus 105 iSty~tDh---IlVp~~~~~~A~~~L~ 128 (133)
T 1zvp_A 105 IAGYYHDH---IFVQKEKAQQALQALG 128 (133)
T ss_dssp EECSSCEE---EEEEGGGHHHHHHHHT
T ss_pred EEeccccE---EEEehhHHHHHHHHHH
Confidence 99866666 8999999999999985
No 68
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.00 E-value=5.5 Score=41.28 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=71.1
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC----ceeEEEeCCchhh-hHHHHHHHHHHHHHHHhhhheee
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE----VSLSLTLDPSKLW-SRELIQQELDHVVEELEKIAIVN 469 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe----~sIS~~I~~~~~~-~~~~~~~~l~~~~~~l~~~~~i~ 469 (557)
..+|++.+. ++||+.+++...|+++|+||.-+.+.. ....+.++-+... ..+.++++|..+-+++.-...+.
T Consensus 12 ~~~lt~~g~---Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 12 SVLITVTGV---DQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 456888874 689999999999999999998876532 2222223222111 12334455555444443211111
Q ss_pred --------cccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEe
Q 008693 470 --------LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQ 509 (557)
Q Consensus 470 --------~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isq 509 (557)
...+..++.++|.- ..++...++...+++.|+|+.-+..
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~-~~~~~~~~i~~~l~~~~~Ni~~l~~ 135 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRP-ITAAAFGAVAREVAALGVNIDLIRG 135 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESS-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ECCcccccCCCCcEEEEEEeCC-CCHHHHHHHHHHHHHcCCCccceee
Confidence 12356789999951 2678999999999999999876554
No 69
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=77.98 E-value=4.6 Score=35.70 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=44.6
Q ss_pred EeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCch
Q 008693 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (557)
Q Consensus 389 Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~ 444 (557)
+........|++.+..-++..|+++.+-..|+++||++..+++.....-| |+.++
T Consensus 56 ~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSty~tD~Il-Vp~~~ 110 (134)
T 1zhv_A 56 VRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLL-VRSND 110 (134)
T ss_dssp SEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEE-EEGGG
T ss_pred CccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEeccccEEE-EeHHH
Confidence 46677888899987656678999999999999999999999988777644 44443
No 70
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=76.70 E-value=5.9 Score=34.95 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=41.4
Q ss_pred eeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCch
Q 008693 390 VLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (557)
Q Consensus 390 s~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~ 444 (557)
........|++.+..-+...|+++.+-..|+++||++..+++.....- .|+.++
T Consensus 66 ~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty~tDhI-lVp~~~ 119 (133)
T 1zvp_A 66 ESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHI-FVQKEK 119 (133)
T ss_dssp CCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSSCEEE-EEEGGG
T ss_pred ccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEeccccEE-EEehhH
Confidence 345677888888765677899999999999999999999998876664 444444
No 71
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=76.25 E-value=7.1 Score=30.61 Aligned_cols=54 Identities=9% Similarity=0.247 Sum_probs=34.8
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEcc---C-ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATS---E-VSLSLTLDPSKLWSRELIQQELDHVVEELEKIA 466 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstS---e-~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~ 466 (557)
.++||.++++.+.|++.|+||..+.+. + ..+.+.+.-.+. ..++.+++.|+++.
T Consensus 13 ~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~-------~~l~~l~~~L~~~~ 70 (88)
T 2ko1_A 13 EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT-------DKLTTLMDKLRKVQ 70 (88)
T ss_dssp ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH-------HHHHHHHHHHTTCT
T ss_pred ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH-------HHHHHHHHHHhcCC
Confidence 468999999999999999999877532 1 223344432221 23556666666543
No 72
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=73.71 E-value=14 Score=29.31 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=37.6
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCC--ceEEEEEE--ec-ccHHHHHHHHH
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS--KVNISLIV--ND-DEAEQCVRALH 533 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsS--e~sIs~vV--~~-~d~~kAv~~LH 533 (557)
..|++.| .+.||+++++.+.|++.|+||.-+.+... .-.+.+.+ +. .+.++..+.|.
T Consensus 6 ~~l~v~~--~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~ 67 (91)
T 1zpv_A 6 AIITVVG--KDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFE 67 (91)
T ss_dssp EEEEEEE--SCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHH
T ss_pred EEEEEEE--CCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHH
Confidence 4566666 46899999999999999999998877432 22333333 33 34454444444
No 73
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=73.44 E-value=16 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=27.5
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist 431 (557)
..+++.+ .++||.++++.+.|++.|+||.-+.+
T Consensus 6 ~~l~v~~---~DrpGila~vt~~la~~~~NI~~i~~ 38 (91)
T 1zpv_A 6 AIITVVG---KDKSGIVAGVSGKIAELGLNIDDISQ 38 (91)
T ss_dssp EEEEEEE---SCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEE---CCCCCHHHHHHHHHHHcCCCEEEEEe
Confidence 4567765 46899999999999999999988753
No 74
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=72.92 E-value=40 Score=30.58 Aligned_cols=91 Identities=11% Similarity=0.203 Sum_probs=53.3
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEc--cC----ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhe---ee-------
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVAT--SE----VSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI---VN------- 469 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~Ist--Se----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~---i~------- 469 (557)
.+.||.++++...|++.|+||+.++. ++ ..++|.++.++ +.++++.+.+.++.. +.
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~--------~~leqI~kqL~Kl~dV~~V~r~~~~~~ 82 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE--------KVLEQIEKQLHKLVDVLRVSELGQGAH 82 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH--------HHHHHHHHHHHHSTTEEEEEEGGGSCE
T ss_pred eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccH--------HHHHHHHHHHcCCCCEEEEEEcCCccc
Confidence 46899999999999999999987753 22 34677776432 234555555554211 11
Q ss_pred cccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEE
Q 008693 470 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 508 (557)
Q Consensus 470 ~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Is 508 (557)
+...+++|-+-..... -..+++...-.+-+|.-++
T Consensus 83 v~rEl~liKv~~~~~~----r~~i~~~~~~fra~ivdv~ 117 (164)
T 2f1f_A 83 VEREIMLVKIQASGYG----RDEVKRNTEIFRGQIIDVT 117 (164)
T ss_dssp EEEEEEEEEEECCTHH----HHHHHHHHHHTTCEEEEEC
T ss_pred ceeEEEEEEEECCccc----HHHHHHHHHHcCCEEEEEC
Confidence 2234567776553222 2345555554455665553
No 75
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=72.65 E-value=5.6 Score=36.38 Aligned_cols=52 Identities=12% Similarity=0.319 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCc----eEEEEEEecccHHHHHHHHHHHhc
Q 008693 484 QRSSLILEKAFRVLRRSGVNVQMISQGASK----VNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 484 ~~~~~v~~rif~~L~~~gInI~~IsqgsSe----~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
.+.||+++++...|++.|+||..++.+.++ ..+.+.++.+ ++.++.|-+.+.
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~ 66 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLH 66 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHc
Confidence 468999999999999999999877766443 4477788744 344444444443
No 76
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=71.18 E-value=5.1 Score=36.70 Aligned_cols=52 Identities=13% Similarity=0.305 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCc----eEEEEEEecccHHHHHHHHHHHhc
Q 008693 484 QRSSLILEKAFRVLRRSGVNVQMISQGASK----VNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 484 ~~~~~v~~rif~~L~~~gInI~~IsqgsSe----~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
.+.||+++++...+++.|+||..++.+.++ ..+.++++.+ ++.++.|-+.+.
T Consensus 12 eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~~~leql~kQL~ 67 (165)
T 2pc6_A 12 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--DEIVEQITKQLN 67 (165)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--HHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--HHHHHHHHHHhc
Confidence 468999999999999999999877766443 4577788744 455555555544
No 77
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=71.06 E-value=60 Score=30.29 Aligned_cols=90 Identities=12% Similarity=0.213 Sum_probs=53.1
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEcc---C---ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh---heeec------
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATS---E---VSLSLTLDPSKLWSRELIQQELDHVVEELEKI---AIVNL------ 470 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstS---e---~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~---~~i~~------ 470 (557)
.+.||.++++...|++.|+||+.++.. + ..+++.++.++ ..++++.+.+.++ ..|..
T Consensus 37 eN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e--------~~ieqL~kQL~KLidVikV~dl~~~~~ 108 (193)
T 2fgc_A 37 HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--------KTIEQIEKQAYKLVEVVKVTPIDPLPE 108 (193)
T ss_dssp ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--------THHHHHHHHHTTSTTEEEEEECCSSGG
T ss_pred CCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH--------HHHHHHHHHhcCcCceEEEEEecCCCC
Confidence 478999999999999999999987532 2 34667776442 1244455555552 11221
Q ss_pred ---ccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEE
Q 008693 471 ---LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 508 (557)
Q Consensus 471 ---~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Is 508 (557)
...+++|-+-.... -..+++...-.+-+|.-++
T Consensus 109 ~~v~REl~LiKV~~~~~-----r~ei~~i~~~fra~ivDv~ 144 (193)
T 2fgc_A 109 NRVEREMALIKVRFDED-----KQEIFQLVEIFRGKIIDVS 144 (193)
T ss_dssp GEEEEEEEEEEEECSSC-----HHHHHHHHHHTTCEEEEEC
T ss_pred ccceeEEEEEEEeCCcC-----HHHHHHHHHHcCCEEEEEc
Confidence 22356677655432 2445555554455665553
No 78
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=70.36 E-value=10 Score=34.85 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=36.1
Q ss_pred eeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecc
Q 008693 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDD 523 (557)
Q Consensus 474 ~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqgs--Se~sIs~vV~~~ 523 (557)
..+|++.| .+.||+++++...|+++|+||.-+.|.. ..-.+.+++...
T Consensus 6 ~~~itv~~--~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~ 55 (192)
T 1u8s_A 6 HLVITAVG--TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 55 (192)
T ss_dssp EEEEEEEE--ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEc--CCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC
Confidence 35788888 3689999999999999999999877643 334455666543
No 79
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=70.32 E-value=5 Score=37.69 Aligned_cols=54 Identities=19% Similarity=0.455 Sum_probs=39.2
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc----eEEEEEEecccHHHHHHHHHHHhcc
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASK----VNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsSe----~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
..+.||+++|+...+++.|+||..++.+.++ ..++++|+.+ +++++.|-+.+..
T Consensus 36 VeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~K 93 (193)
T 2fgc_A 36 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYK 93 (193)
T ss_dssp EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTT
T ss_pred ECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcC
Confidence 4578999999999999999999987775332 3477788754 4455555555543
No 80
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=68.07 E-value=42 Score=30.51 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=53.4
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEc--cC----ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh---eee-------
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVAT--SE----VSLSLTLDPSKLWSRELIQQELDHVVEELEKIA---IVN------- 469 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~Ist--Se----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~---~i~------- 469 (557)
.+.||.++++...|++.|+||+.++. ++ ..+++.++.++ +.++++.+.+.++- .+.
T Consensus 12 eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~--------~~leql~kQL~Kl~dV~~V~~~~~~~~ 83 (165)
T 2pc6_A 12 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD--------EIVEQITKQLNKLIEVVKLIDLSSEGY 83 (165)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH--------HHHHHHHHHHHHSTTEEEEEEGGGSCE
T ss_pred eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccH--------HHHHHHHHHhcCCCCEEEEEEcCCcce
Confidence 46899999999999999999987753 22 34667776432 23445555555421 111
Q ss_pred cccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEE
Q 008693 470 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 508 (557)
Q Consensus 470 ~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Is 508 (557)
+...+++|-+-..... -..+++...-.+-+|.-++
T Consensus 84 v~rEl~liKv~~~~~~----r~~i~~~~~~fra~ivdv~ 118 (165)
T 2pc6_A 84 VERELMLVKVRAVGKD----REEMKRLADIFRGNIIDVT 118 (165)
T ss_dssp EEEEEEEEEEECCTHH----HHHHHHHHHHTTCEEEEEE
T ss_pred eeeEEEEEEEeCCccc----HHHHHHHHHHcCCEEEEEc
Confidence 2234566766553222 2345555554555666554
No 81
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=63.97 E-value=19 Score=33.10 Aligned_cols=72 Identities=14% Similarity=0.285 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecC
Q 008693 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (557)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlg 283 (557)
-|+..+++.|++.|+....+. ++-+ +.+.+.+.+... ++..++.|++|..|.+.
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~-----iv~D-----------d~~~I~~~l~~a-~~~~DlVittGG~g~~~--------- 76 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGF-----VVMD-----------DLDEIGWAFRVA-LEVSDLVVSSGGLGPTF--------- 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----EECS-----------CHHHHHHHHHHH-HHHCSEEEEESCCSSST---------
T ss_pred HHHHHHHHHHHHCCCEEEEEE-----EeCC-----------CHHHHHHHHHHH-HhcCCEEEEcCCCcCCc---------
Confidence 477788999999999765432 3322 234555555543 34467888988666542
Q ss_pred CCcchhHHHHHHHHcCcCcEEE
Q 008693 284 RGGSDLTATTIGKALGLQEIQV 305 (557)
Q Consensus 284 RgGSD~tAa~lA~~L~A~~l~i 305 (557)
-|+|.-.++.+++.+ +.+
T Consensus 77 ---~D~T~ea~a~~~~~~-l~~ 94 (172)
T 3kbq_A 77 ---DDMTVEGFAKCIGQD-LRI 94 (172)
T ss_dssp ---TCCHHHHHHHHHTCC-CEE
T ss_pred ---ccchHHHHHHHcCCC-eee
Confidence 788999999999954 443
No 82
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=63.26 E-value=23 Score=32.69 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=29.2
Q ss_pred cEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc
Q 008693 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (557)
Q Consensus 394 nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist 431 (557)
...+|+|.+. .+||++++|...|+++|+||.-+.+
T Consensus 92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~ 126 (195)
T 2nyi_A 92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELET 126 (195)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEcee
Confidence 3456788764 5899999999999999999998754
No 83
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=62.59 E-value=21 Score=27.71 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=30.5
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCc--eEEEEEEecccH
Q 008693 484 QRSSLILEKAFRVLRRSGVNVQMISQGASK--VNISLIVNDDEA 525 (557)
Q Consensus 484 ~~~~~v~~rif~~L~~~gInI~~IsqgsSe--~sIs~vV~~~d~ 525 (557)
.+.||+++++.+.|++.|+||..+.+.... ..+.+.++-.+.
T Consensus 13 ~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~ 56 (88)
T 2ko1_A 13 EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT 56 (88)
T ss_dssp ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH
T ss_pred ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH
Confidence 467999999999999999999987775322 234455554443
No 84
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=54.14 E-value=17 Score=34.78 Aligned_cols=112 Identities=13% Similarity=0.211 Sum_probs=63.6
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC---------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhe---eecccc
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE---------VSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI---VNLLQH 473 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe---------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~---i~~~~~ 473 (557)
.+++|.++++.+.|+++++||..+.++. ..+.+-+++.+ ++.++++|+++.. +....+
T Consensus 12 ~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~----------Le~LL~kLrkI~gV~~V~Rv~~ 81 (223)
T 1y7p_A 12 ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGD----------FEKILERVKTFDYIIEIEEEES 81 (223)
T ss_dssp ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSC----------HHHHHHHHHTCTTEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCC----------HHHHHHHHhCCCCeeEEEEEcc
Confidence 4689999999999999999999986432 23444444331 4455566665432 322222
Q ss_pred e-----eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHH
Q 008693 474 R-----SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRAL 532 (557)
Q Consensus 474 ~-----aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~L 532 (557)
+ .-|-|+|.+.+..+++--+.+.-.+++|.=.-||- ...-++-+++..+|+.++
T Consensus 82 ~~~i~gkrvii~gggaqv~qva~gai~eadrhnirgerisv-----dt~p~vge~~l~~av~av 140 (223)
T 1y7p_A 82 FERVFGKRVIILGGGALVSQVAIGAISEADRHNLRGERISV-----DTMPVVGEEEIAEAVKAV 140 (223)
T ss_dssp HHHHTCEEEEEEECHHHHHHHHHHHHHHHHHHHHTSCCEEE-----EEEECCSHHHHHHHHHHG
T ss_pred hhhhcCcEEEEECCcHHHHHHHHhhcchhhhcccccceeee-----ecceecCHHHHHHHHHHH
Confidence 2 44667787666677777777777776555444443 122345555555555543
No 85
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=49.02 E-value=39 Score=30.64 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhc-CCceEEEcCCCcccCCCCceee
Q 008693 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITT 281 (557)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~-~~~vpVv~Gfig~~~~~G~~tt 281 (557)
--|+..+++.|++.|+..... +++-+ +.+.+.+.+...+.+ ..++.|++|..|.+.
T Consensus 27 D~n~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a~~~~~~DlVittGG~g~~~------- 83 (172)
T 1mkz_A 27 DTSGHYLRDSAQEAGHHVVDK-----AIVKE-----------NRYAIRAQVSAWIASDDVQVVLITGGTGLTE------- 83 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHHHHSSSCCEEEEESCCSSST-------
T ss_pred CccHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC-------
Confidence 347778889999999876443 13322 234556656543222 256889988666542
Q ss_pred cCCCcchhHHHHHHHHcC
Q 008693 282 LGRGGSDLTATTIGKALG 299 (557)
Q Consensus 282 lgRgGSD~tAa~lA~~L~ 299 (557)
-|+|.-+++.+++
T Consensus 84 -----~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 84 -----GDQAPEALLPLFD 96 (172)
T ss_dssp -----TCCHHHHHGGGCS
T ss_pred -----CCCHHHHHHHHhc
Confidence 6888888887775
No 86
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=46.93 E-value=1.6e+02 Score=28.99 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=66.6
Q ss_pred CCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe---cCCCCC--c---ceee
Q 008693 321 PHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR---RSRDMS--K---AVLT 387 (557)
Q Consensus 321 ~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~---~~~~~~--~---~~Vt 387 (557)
|+++.++.-|-.+|.++...+. -+=.+.| |..+|.+|.-.|..|-.+--|++. +..... . .+-+
T Consensus 120 p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~A---A~~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~ 196 (283)
T 2qmx_A 120 PQIRAEAAYDTAGSAKMVAESRDKSALAIASKRA---GELYGLDILKENLADEEWNITRFFCIAHENNPDISHLKVRPDV 196 (283)
T ss_dssp TTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHH---HHHTTCEEEESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEE
T ss_pred CCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHH---HHHcCCceecccCcCCCCCeeeEEEEecCccccccccccCCCC
Confidence 5678888888888888876432 1222333 456899998887766444445543 221110 0 0111
Q ss_pred EEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc-----cCceeEEEeCC
Q 008693 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT-----SEVSLSLTLDP 442 (557)
Q Consensus 388 ~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist-----Se~sIS~~I~~ 442 (557)
+ .+-+-|-+.- .+.||.+.++++.|+.+|||.-.|-+ ..-...|.+|=
T Consensus 197 ~----~~ktsl~f~~---~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~ 249 (283)
T 2qmx_A 197 A----RQKTSIVFAL---PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF 249 (283)
T ss_dssp E----EEEEEEEEEE---ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE
T ss_pred C----CceEEEEEEc---CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE
Confidence 1 1223333332 25799999999999999999888842 22345677653
No 87
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=42.83 E-value=56 Score=29.37 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhc--CCceEEEcCCCcccCCCCceee
Q 008693 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITT 281 (557)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~--~~~vpVv~Gfig~~~~~G~~tt 281 (557)
-|+..+++.|++.|+..... +++-+ +.+.+.+.+... ++ ..++.|++|..|.+.
T Consensus 31 sn~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~------- 86 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSY-----EIVKD-----------DKESIQQAVLAG-YHKEDVDVVLTNGGTGITK------- 86 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEE-----EEECS-----------SHHHHHHHHHHH-HTCTTCSEEEEECCCSSST-------
T ss_pred ChHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC-------
Confidence 47778888999999875443 23322 245566666543 44 457889988666542
Q ss_pred cCCCcchhHHHHHHHHcC
Q 008693 282 LGRGGSDLTATTIGKALG 299 (557)
Q Consensus 282 lgRgGSD~tAa~lA~~L~ 299 (557)
-|+|.-+++.+++
T Consensus 87 -----~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 87 -----RDVTIEAVSALLD 99 (169)
T ss_dssp -----TCCHHHHHHTTCS
T ss_pred -----CCCcHHHHHHHcC
Confidence 6888888887665
No 88
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=40.05 E-value=46 Score=29.78 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhc--CCceEEEcCCCcccCCCCceeec
Q 008693 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITTL 282 (557)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~--~~~vpVv~Gfig~~~~~G~~ttl 282 (557)
|+..+++.|++.|+..... +++-+ +.+.+.+.+... ++ ..++.|++|..|.+.
T Consensus 22 n~~~l~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~-------- 76 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAY-----ELVPD-----------EPPMIKKVLRLW-ADREGLDLILTNGGTGLAP-------- 76 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEE-----EEECS-----------CHHHHHHHHHHH-HHTSCCSEEEEESCCSSST--------
T ss_pred hHHHHHHHHHHCCCeEeEE-----EEcCC-----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC--------
Confidence 6677888999999765442 23322 235566666543 33 457889988666441
Q ss_pred CCCcchhHHHHHHHHcC
Q 008693 283 GRGGSDLTATTIGKALG 299 (557)
Q Consensus 283 gRgGSD~tAa~lA~~L~ 299 (557)
-|+|.-+++.+++
T Consensus 77 ----~D~t~ea~~~~~~ 89 (164)
T 2is8_A 77 ----RDRTPEATRELLD 89 (164)
T ss_dssp ----TCCHHHHHHTTCS
T ss_pred ----CCChHHHHHHHhC
Confidence 6888888887654
No 89
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=38.96 E-value=2.4e+02 Score=27.67 Aligned_cols=34 Identities=12% Similarity=-0.048 Sum_probs=28.9
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS 432 (557)
..+++.+. +++|+.+++.+.|+++|+||.-+++.
T Consensus 9 ~vLtv~c~---DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 9 WILTADCP---SMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEeC---CCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 45788764 68999999999999999999988754
No 90
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=38.00 E-value=74 Score=28.98 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcC--CceEEEcCCCcccCCCCceee
Q 008693 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD--LAIPIVTGFLGKAWRTCAITT 281 (557)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~--~~vpVv~Gfig~~~~~G~~tt 281 (557)
-|+..+++.|++.|+....+ +++-+ +.+.+.+.+.+. +++ .++.|++|..|.+
T Consensus 40 sn~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a-~~~~~~DlVittGG~s~g-------- 94 (178)
T 2pjk_A 40 ESGDIIKQLLIENGHKIIGY-----SLVPD-----------DKIKILKAFTDA-LSIDEVDVIISTGGTGYS-------- 94 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HTCTTCCEEEEESCCSSS--------
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCCCCC--------
Confidence 36677888999999875443 23322 245566666543 344 5788888866543
Q ss_pred cCCCcchhHHHHHHHHcC
Q 008693 282 LGRGGSDLTATTIGKALG 299 (557)
Q Consensus 282 lgRgGSD~tAa~lA~~L~ 299 (557)
.-|+|.-.++.+++
T Consensus 95 ----~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 95 ----PTDITVETIRKLFD 108 (178)
T ss_dssp ----TTCCHHHHHGGGCS
T ss_pred ----CCcchHHHHHHHhc
Confidence 16888888887755
No 91
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=37.25 E-value=57 Score=33.41 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=31.2
Q ss_pred eeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecC
Q 008693 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA 511 (557)
Q Consensus 474 ~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqgs 511 (557)
..+|+++| .+.||+.+++.+.|+++|+||.-++|..
T Consensus 12 ~~~lt~~g--~Dr~Giv~~vs~~l~~~~~nI~d~~q~~ 47 (415)
T 3p96_A 12 SVLITVTG--VDQPGVTATLFEVLSRHGVELLNVEQVV 47 (415)
T ss_dssp EEEEEEEE--ECCTTHHHHHHHHHTTTTCEEEEEEEEE
T ss_pred eEEEEEEc--CCCCCHHHHHHHHHHHCCCCEEEeeeEE
Confidence 46789988 4679999999999999999999888754
No 92
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=36.81 E-value=64 Score=33.67 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCC
Q 008693 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (557)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgR 284 (557)
|+..+++.|++.|+....+ +++.+ +.+.+.+.+... ++..++.|++|..+.+
T Consensus 209 N~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a-~~~~DlVittGG~s~g----------- 260 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINL-----GIVGD-----------NPDDLLNALNEG-ISRADVIITSGGVSMG----------- 260 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEE-----EEECS-----------SHHHHHHHHHHH-HHHCSEEEEESCCSSS-----------
T ss_pred chHHHHHHHHHCCCEEEEE-----eecCC-----------CHHHHHHHHHHH-HhcCCEEEEcCCCcCC-----------
Confidence 7778899999999876543 24432 234555555543 3345788898855533
Q ss_pred CcchhHHHHHHHHcCcCcEEEee
Q 008693 285 GGSDLTATTIGKALGLQEIQVWK 307 (557)
Q Consensus 285 gGSD~tAa~lA~~L~A~~l~i~T 307 (557)
--|++..+++..++. ++.+|.
T Consensus 261 -~~D~t~~al~~~lg~-~~~f~~ 281 (419)
T 2fts_A 261 -EKDYLKQVLDIDLHA-QIHFGR 281 (419)
T ss_dssp -CCHHHHHHHHTTTCC-EEEESE
T ss_pred -CcccHHHHHHHHcCC-ceEEeE
Confidence 279999999888887 466653
No 93
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=36.36 E-value=3.2e+02 Score=26.79 Aligned_cols=64 Identities=6% Similarity=0.100 Sum_probs=41.0
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc--C------ceeEEEeCCchhhhHHHHHHHHHHHHHHHh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--E------VSLSLTLDPSKLWSRELIQQELDHVVEELE 463 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS--e------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~ 463 (557)
..+++.+. +++|+.+++.+.|+++|+||.-+++. . ..+.|.++... ...+.++++|..+-+++.
T Consensus 7 ~iLtv~g~---DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~~~~L~~~f~~la~~~~ 78 (288)
T 3obi_A 7 YVLTLSCP---DRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-IPLASLRTGFGVIAAKFT 78 (288)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-CCHHHHHHHHHHHHHHTT
T ss_pred EEEEEECC---CCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-CCHHHHHHHHHHHHHHcC
Confidence 45788764 68999999999999999999988752 1 22334444321 123345555655544444
No 94
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=35.87 E-value=3.3e+02 Score=26.89 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=28.6
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS 432 (557)
..+++.+. +++|+.+++-+.|+++|+||.-+++.
T Consensus 23 ~iLtv~c~---DrpGIVa~VS~~La~~g~NI~d~~q~ 56 (302)
T 3o1l_A 23 FRLVIACP---DRVGIVAKVSNFLASHNGWITEASHH 56 (302)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEECC---CCCCHHHHHHHHHHHCCCCEEEeeEE
Confidence 45777764 68999999999999999999988654
No 95
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=35.50 E-value=58 Score=32.50 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=30.4
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
.+++++|. +.+|+.+++.+.|+++|+||.-++|-
T Consensus 23 ~iLtv~c~--DrpGIVa~VS~~La~~g~NI~d~~q~ 56 (302)
T 3o1l_A 23 FRLVIACP--DRVGIVAKVSNFLASHNGWITEASHH 56 (302)
T ss_dssp EEEEEEEE--CCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHCCCCEEEeeEE
Confidence 67888884 67899999999999999999998885
No 96
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=34.98 E-value=76 Score=29.24 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecC
Q 008693 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (557)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlg 283 (557)
-|...+++.|++.|+....+. ++-+ +.+.+++.+.+.+.++.++.|++|..|.+.
T Consensus 49 sn~~~L~~~L~~~G~~v~~~~-----iv~D-----------d~~~I~~al~~a~~~~~DlVIttGGts~g~--------- 103 (185)
T 3rfq_A 49 HSGPLVTELLTEAGFVVDGVV-----AVEA-----------DEVDIRNALNTAVIGGVDLVVSVGGTGVTP--------- 103 (185)
T ss_dssp SHHHHHHHHHHHTTEEEEEEE-----EECS-----------CHHHHHHHHHHHHHTTCSEEEEESCCSSST---------
T ss_pred cHHHHHHHHHHHCCCEEEEEE-----EeCC-----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCC---------
Confidence 377888999999998754432 3322 234566666543224567889988665441
Q ss_pred CCcchhHHHHHHHHcC
Q 008693 284 RGGSDLTATTIGKALG 299 (557)
Q Consensus 284 RgGSD~tAa~lA~~L~ 299 (557)
-|+|.-.++..++
T Consensus 104 ---~D~t~eal~~l~~ 116 (185)
T 3rfq_A 104 ---RDVTPESTREILD 116 (185)
T ss_dssp ---TCCHHHHHHTTCS
T ss_pred ---cccHHHHHHHHhc
Confidence 6888888877665
No 97
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=34.16 E-value=49 Score=32.79 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=29.7
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEe
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQ 509 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isq 509 (557)
.+++++|. +.+|+.+++.+.|+++|+||.-++|
T Consensus 7 ~iLtv~g~--DrpGIVa~Vs~~La~~g~NI~d~~q 39 (288)
T 3obi_A 7 YVLTLSCP--DRAGIVSAVSTFLFENGQNILDAQQ 39 (288)
T ss_dssp EEEEEEEE--CCTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHCCCcEEeeee
Confidence 57888883 6789999999999999999999988
No 98
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=33.31 E-value=90 Score=30.79 Aligned_cols=34 Identities=12% Similarity=-0.130 Sum_probs=30.2
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
.+++++| .+.+|+.+++.+.|+++|+||.-++|.
T Consensus 9 ~vLtv~c--~DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 9 WILTADC--PSMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp EEEEEEE--ECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEe--CCCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 5788888 367899999999999999999998885
No 99
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=32.59 E-value=64 Score=28.92 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHH----HHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhc-CCceEEEcCCCcccCCCCc
Q 008693 204 MSTRIFAAY----LNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCA 278 (557)
Q Consensus 204 lsa~ll~~~----L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~-~~~vpVv~Gfig~~~~~G~ 278 (557)
-|+..+++. |++.|+....+ +++-+ +.+.+.+.+.+. ++ ..++.|++|..|.+.
T Consensus 25 ~n~~~l~~~~~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~~l~~a-~~~~~DlVittGG~g~~~---- 83 (167)
T 2g2c_A 25 KALPLLQRLMSDELQDYSYELISE-----VVVPE-----------GYDTVVEAIATA-LKQGARFIITAGGTGIRA---- 83 (167)
T ss_dssp CHHHHHHHHHCC----CEEEEEEE-----EEECS-----------SHHHHHHHHHHH-HHTTCSEEEEESCCSSST----
T ss_pred cHHHHHHHhHHhHHHHCCCEEeEE-----EEeCC-----------CHHHHHHHHHHH-HhCCCCEEEECCCCCCCC----
Confidence 366778888 88888765432 23322 345566666543 34 357889988666542
Q ss_pred eeecCCCcchhHHHHHHHHcC
Q 008693 279 ITTLGRGGSDLTATTIGKALG 299 (557)
Q Consensus 279 ~ttlgRgGSD~tAa~lA~~L~ 299 (557)
-|+|.-.++.+++
T Consensus 84 --------~D~t~ea~~~~~~ 96 (167)
T 2g2c_A 84 --------KNQTPEATASFIH 96 (167)
T ss_dssp --------TCCHHHHHHTTCS
T ss_pred --------CcChHHHHHHHhC
Confidence 6788888887654
No 100
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=32.54 E-value=67 Score=28.84 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCC
Q 008693 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (557)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgR 284 (557)
|...+++.|++.|+....+ +++- .+ +.+.+.+.+.+....++.|++|..+.+
T Consensus 28 n~~~l~~~l~~~G~~v~~~-----~iv~-----------Dd-~~i~~al~~a~~~~~DlVittGG~s~g----------- 79 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQP-----EVVA-----------DG-SPVGEALRKAIDDDVDVILTSGGTGIA----------- 79 (164)
T ss_dssp HHHHHHHHHHHTTCEECCC-----EEEC-----------SS-HHHHHHHHHHHHTTCSEEEEESCCSSS-----------
T ss_pred HHHHHHHHHHHCCCEEEEE-----EEeC-----------CH-HHHHHHHHHHHhCCCCEEEECCCCCCC-----------
Confidence 6677888999999864332 2332 13 445555554321255788998866544
Q ss_pred CcchhHHHHHHHHcC
Q 008693 285 GGSDLTATTIGKALG 299 (557)
Q Consensus 285 gGSD~tAa~lA~~L~ 299 (557)
.-|+|.-+++..++
T Consensus 80 -~~D~t~eal~~~~~ 93 (164)
T 3pzy_A 80 -PTDSTPDQTVAVVD 93 (164)
T ss_dssp -TTCCHHHHHHTTCS
T ss_pred -CCccHHHHHHHHhc
Confidence 16888888887766
No 101
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=31.37 E-value=72 Score=30.44 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=35.2
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc-------eEEEEEEecccHHHHHHHHH
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASK-------VNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsSe-------~sIs~vV~~~d~~kAv~~LH 533 (557)
..+.+|+++++.+.|++.++||..+.+.... -.+.+=+++.+.++.++.|.
T Consensus 11 a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~Le~LL~kLr 68 (223)
T 1y7p_A 11 AENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVK 68 (223)
T ss_dssp EECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCCHHHHHHHHh
Confidence 3567999999999999999999999986643 34555566666666666665
No 102
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=31.15 E-value=3.9e+02 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=28.9
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS 432 (557)
..+++.+. +++|+.+++.+.|+++|+||.-+.+.
T Consensus 11 ~vLtv~c~---Dr~GIVa~Vs~~La~~g~NI~d~~q~ 44 (292)
T 3lou_A 11 FVLTLSCP---SAAGQVAAVVGLLDRHRCYVDELTVF 44 (292)
T ss_dssp EEEEEEEE---SCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEEcC---CCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence 45788764 68999999999999999999988754
No 103
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=31.02 E-value=4e+02 Score=26.47 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCCccccccCHHHHHHHHHcCC----CcchHhHHHHHHhCC-CCEEEecCCCCCCCCeeE---ecCCCCCcceeeEEeee
Q 008693 321 PHAKPVPYLTFDEAAELAYFGA----QVLHPQSMRPAREGD-IPVRVKNSYNPNAPGTLI---RRSRDMSKAVLTSIVLK 392 (557)
Q Consensus 321 ~~a~~i~~ls~~Ea~eLa~~Ga----~vlhp~a~~~a~~~~-Ipv~I~n~~~p~~~GT~I---~~~~~~~~~~Vt~Is~~ 392 (557)
|+++.++.-|-.+|.++...+- -.+-++ .-|..+| .+|.-.|..+-.+--|++ ++....... + .
T Consensus 127 p~~~~v~~~STA~AA~~va~~~~~~~AAIas~--~AA~~Yg~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~--~----~ 198 (313)
T 3mwb_A 127 PNADYVPGSSTAASAMGLLEDDAPYEAAICAP--LIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPER--T----G 198 (313)
T ss_dssp TTCEEEECSCHHHHHHHTTSTTCSCSEEEECH--HHHHHCTTCEEEESCCCSCTTCEEEEEEEECSCCCCCC--C----S
T ss_pred CCCEEEEcCcHHHHHHHHHhCCCCCccccCcH--HHHHHcCChhhhhhcccCCCcceeEEEEEecCCCCCCC--C----C
Confidence 5678888888889888865432 122222 2345688 998888776644445653 222110000 0 1
Q ss_pred ccEEEEEEEecCcc-chhhHHHHHHHHHHhCCceEEEEEc-----cCceeEEEeCC
Q 008693 393 RNVTMLDIVSTRML-GQYGFLAKVFSTFEDLGISVDVVAT-----SEVSLSLTLDP 442 (557)
Q Consensus 393 ~nialItI~~~~m~-~~~g~la~If~~L~~~gI~Vd~Ist-----Se~sIS~~I~~ 442 (557)
.+-+-|-+. .. +.||.+.++++.|+.+|||.-.|-+ ..-...|.||-
T Consensus 199 ~~kTSl~f~---~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 199 ADKTTVVVP---LPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp SEEEEEEEE---CSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CCeEEEEEE---eCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 122222232 22 5899999999999999999887742 12345677653
No 104
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=30.84 E-value=1.4e+02 Score=29.37 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=30.7
Q ss_pred eeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 474 ~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
-.+++++|. +.+|+.+++.+.|+++|+||.-++|-
T Consensus 7 ~~vLtv~c~--Dr~GIVa~Vs~~La~~g~NI~d~~q~ 41 (287)
T 3nrb_A 7 QYVLSLACQ--DAPGIVSEVSTFLFNNGANIVEAEQF 41 (287)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEEECC--CCCCHHHHHHHHHHHCCCCEEeeeee
Confidence 467888884 67899999999999999999999883
No 105
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=30.80 E-value=1.1e+02 Score=27.45 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchh-cCCceEEEcCCCcccCCCCceeec
Q 008693 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCAITTL 282 (557)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll-~~~~vpVv~Gfig~~~~~G~~ttl 282 (557)
-|..++++.|++.|++..... ++-| +.+.+.+.+...+. +..++.|++|..|.+.
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~-----iV~D-----------d~~~i~~al~~~~a~~~~DlVittGG~g~~~-------- 95 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYS-----LVPD-----------DKIKILKAFTDALSIDEVDVIISTGGTGYSP-------- 95 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----EECS-----------CHHHHHHHHHHHHTCTTCCEEEEESCCSSST--------
T ss_pred chHHHHHHHHHHCCCEEEEEE-----EeCC-----------CHHHHHHHHHHHHhcCCCCEEEecCCcccCC--------
Confidence 366778899999999865432 3322 23445554543221 2346888888666542
Q ss_pred CCCcchhHHHHHHHHc
Q 008693 283 GRGGSDLTATTIGKAL 298 (557)
Q Consensus 283 gRgGSD~tAa~lA~~L 298 (557)
-|+|.-.++..+
T Consensus 96 ----~D~t~ea~~~~~ 107 (178)
T 3iwt_A 96 ----TDITVETIRKLF 107 (178)
T ss_dssp ----TCCHHHHHGGGC
T ss_pred ----CCchHHHHHHhh
Confidence 566776666554
No 106
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=28.07 E-value=87 Score=31.02 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=30.6
Q ss_pred eeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 474 ~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
-.+++++|. +.+|+.+++.+.|+++|+||.-++|.
T Consensus 10 ~~vLtv~c~--Dr~GIVa~Vs~~La~~g~NI~d~~q~ 44 (292)
T 3lou_A 10 QFVLTLSCP--SAAGQVAAVVGLLDRHRCYVDELTVF 44 (292)
T ss_dssp EEEEEEEEE--SCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cEEEEEEcC--CCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence 357888883 67899999999999999999999885
No 107
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=27.18 E-value=1.7e+02 Score=30.35 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecC
Q 008693 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (557)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlg 283 (557)
-|...+++.|++.|.....+ +++.+ +.+.+.+.+.+. ++..++.|++|..+.+
T Consensus 204 sn~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~al~~a-~~~~DlvittGG~s~g---------- 256 (411)
T 1g8l_A 204 TNRLAVHLMLEQLGCEVINL-----GIIRD-----------DPHALRAAFIEA-DSQADVVISSGGVSVG---------- 256 (411)
T ss_dssp CHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HHHCSEEEECSSSCSS----------
T ss_pred CchHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-hhcCCEEEECCCCCCC----------
Confidence 36778899999999876543 24432 234555555543 3345688998865543
Q ss_pred CCcchhHHHHHHHHcCcCcEEEe
Q 008693 284 RGGSDLTATTIGKALGLQEIQVW 306 (557)
Q Consensus 284 RgGSD~tAa~lA~~L~A~~l~i~ 306 (557)
--|++--.++.. | ++.+|
T Consensus 257 --~~D~t~~al~~~-G--~i~f~ 274 (411)
T 1g8l_A 257 --EADYTKTILEEL-G--EIAFW 274 (411)
T ss_dssp --SCSHHHHHHHHH-S--EEEEE
T ss_pred --CcccHHHHHHhc-C--cEEEE
Confidence 278888888865 6 67777
No 108
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=26.87 E-value=1.7e+02 Score=26.93 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhc-CCceEEEcCCCcccCCCCceeecC
Q 008693 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLG 283 (557)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~-~~~vpVv~Gfig~~~~~G~~ttlg 283 (557)
|+..+++.|++.|...... ..+++-+ +.+.+.+.+.+.+.. ..++.|++|..|.+.
T Consensus 24 n~~~L~~~L~~~G~~~~v~---~~~iV~D-----------d~~~I~~al~~a~~~~~~DlVitTGGtg~g~--------- 80 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFEL---ETRLIPD-----------EQAIIEQTLCELVDEMSCHLVLTTGGTGPAR--------- 80 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEE---EEEEEES-----------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST---------
T ss_pred HHHHHHHHHHHcCCCCceE---EEEEeCC-----------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC---------
Confidence 6678889999999862111 1223332 234566666543221 457889988666542
Q ss_pred CCcchhHHHHHHHHcC
Q 008693 284 RGGSDLTATTIGKALG 299 (557)
Q Consensus 284 RgGSD~tAa~lA~~L~ 299 (557)
-|+|.-+++..++
T Consensus 81 ---~D~T~ea~~~~~~ 93 (195)
T 1di6_A 81 ---RDVTPDATLAVAD 93 (195)
T ss_dssp ---TCCHHHHHHHTCS
T ss_pred ---CccHHHHHHHHhc
Confidence 6888888887664
No 109
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=26.17 E-value=1.8e+02 Score=25.82 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=28.2
Q ss_pred hHHHHHHHhhchh-cCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCc
Q 008693 246 YPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300 (557)
Q Consensus 246 ~~~v~~~l~~~ll-~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A 300 (557)
.+.+.+.+.+.+. +..++.|++|..|.+. -|+|.-+++.+++-
T Consensus 56 ~~~i~~~l~~~~~~~~~DlVittGG~g~g~------------~D~t~~a~~~~~~~ 99 (167)
T 1uuy_A 56 VERIKDILQKWSDVDEMDLILTLGGTGFTP------------RDVTPEATKKVIER 99 (167)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEESCCSSST------------TCCHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCC------------CCchHHHHHHHhcC
Confidence 4556666654321 2457889988665441 78889999988863
No 110
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=26.14 E-value=1.4e+02 Score=31.00 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCC
Q 008693 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (557)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgR 284 (557)
|...+++.|++.|+....+ +++.+ +.+.+.+.+.+. +++.++.|++|..+.+
T Consensus 208 N~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a-~~~~DlVittGG~s~g----------- 259 (402)
T 1uz5_A 208 NGRALCDAINELGGEGIFM-----GVARD-----------DKESLKALIEKA-VNVGDVVVISGGASGG----------- 259 (402)
T ss_dssp HHHHHHHHHHHHTSEEEEE-----EEECS-----------SHHHHHHHHHHH-HHHCSEEEEECCC--------------
T ss_pred hHHHHHHHHHhCCCeEEEE-----EEeCC-----------CHHHHHHHHHHH-hhCCCEEEEcCCCCCC-----------
Confidence 7778899999999876443 24432 234555555543 3345688888855533
Q ss_pred CcchhHHHHHHHHcCcCcEEEe
Q 008693 285 GGSDLTATTIGKALGLQEIQVW 306 (557)
Q Consensus 285 gGSD~tAa~lA~~L~A~~l~i~ 306 (557)
--|++-..++.+ | ++.+|
T Consensus 260 -~~D~t~~al~~~-G--~~~f~ 277 (402)
T 1uz5_A 260 -TKDLTASVIEEL-G--EVKVH 277 (402)
T ss_dssp ---CHHHHHHHHH-S--EEEEE
T ss_pred -CcccHHHHHHhh-C--CEEEe
Confidence 278888888876 6 77777
No 111
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=25.68 E-value=1.7e+02 Score=26.42 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHHHHH---HcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhc--CCceEEEcCCCcccCCCCce
Q 008693 205 STRIFAAYLN---KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAI 279 (557)
Q Consensus 205 sa~ll~~~L~---~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~--~~~vpVv~Gfig~~~~~G~~ 279 (557)
|+..+++.|+ +.|+.. .. +++-+ +.+.+.+.+... ++ ..++.|++|..|.+.
T Consensus 26 n~~~l~~~l~~l~~~G~~v-~~-----~iv~D-----------d~~~I~~~l~~~-~~~~~~DlVittGG~g~g~----- 82 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPFEV-EY-----RVIPD-----------ERDLIEKTLIEL-ADEKGCSLILTTGGTGPAP----- 82 (178)
T ss_dssp HHHHHHHHHHHHBCSCCEE-EE-----EEECS-----------CHHHHHHHHHHH-HHTSCCSEEEEESCCSSST-----
T ss_pred hHHHHHHHHHHHHhCCCEE-EE-----EEcCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCCCCCC-----
Confidence 5667778777 888864 32 23322 234556656543 33 457889988666542
Q ss_pred eecCCCcchhHHHHHHHHcC
Q 008693 280 TTLGRGGSDLTATTIGKALG 299 (557)
Q Consensus 280 ttlgRgGSD~tAa~lA~~L~ 299 (557)
-|+|.-.++.+++
T Consensus 83 -------~D~t~ea~~~~~~ 95 (178)
T 2pbq_A 83 -------RDVTPEATEAVCE 95 (178)
T ss_dssp -------TCCHHHHHHHHCS
T ss_pred -------CCchHHHHHHHhC
Confidence 6888888888765
No 112
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=25.30 E-value=1.8e+02 Score=26.53 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHH---cCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhc--CCceEEEcCCCcccCCCCc
Q 008693 204 MSTRIFAAYLNK---IGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCA 278 (557)
Q Consensus 204 lsa~ll~~~L~~---~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~--~~~vpVv~Gfig~~~~~G~ 278 (557)
-|+..+++.|++ .|+..... +++-+ +.+.+.+.+... ++ ..++.|++|..|.+.
T Consensus 34 ~n~~~L~~~L~~~~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a-~~~~~~DlVIttGGtg~g~---- 92 (189)
T 1jlj_A 34 RSGINLKDLVQDPSLLGGTISAY-----KIVPD-----------EIEEIKETLIDW-CDEKELNLILTTGGTGFAP---- 92 (189)
T ss_dssp HHHHHHHHHHHCTTTTCCEEEEE-----EEECS-----------CHHHHHHHHHHH-HHTSCCSEEEEESCCSSST----
T ss_pred hHHHHHHHHHhchhcCCcEEEEE-----EEeCC-----------CHHHHHHHHHHH-hhcCCCCEEEEcCCCCCCC----
Confidence 366778888887 78765432 23322 234566666543 33 457889988665441
Q ss_pred eeecCCCcchhHHHHHHHHcC
Q 008693 279 ITTLGRGGSDLTATTIGKALG 299 (557)
Q Consensus 279 ~ttlgRgGSD~tAa~lA~~L~ 299 (557)
-|+|.-+++..++
T Consensus 93 --------~D~t~eal~~~~~ 105 (189)
T 1jlj_A 93 --------RDVTPEATKEVIE 105 (189)
T ss_dssp --------TCCHHHHHHHHCS
T ss_pred --------cccHHHHHHHHhc
Confidence 7888888887753
No 113
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=25.19 E-value=2.8e+02 Score=22.71 Aligned_cols=81 Identities=23% Similarity=0.351 Sum_probs=45.3
Q ss_pred eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceE
Q 008693 436 LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVN 515 (557)
Q Consensus 436 IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~s 515 (557)
|...+++++ ++.+.+.|...+ ...+++..+-|.+.+... ...+.-. ...+..+ .+..
T Consensus 4 I~aII~~~~----------~~~v~~aL~~~G----~~g~Tv~~v~G~G~~~~~--~~~~~g~---~~~~~~~----~k~~ 60 (112)
T 1hwu_A 4 VTAIIKPFK----------LDEVRESLAEVG----VTGLTVTEVKGFGRQKGH--TELYRGA---EYVVDFL----PKVK 60 (112)
T ss_dssp EEEEECGGG----------HHHHHHHHHHTT----CCCCEEEEEEEEC------------------CCCCEE----EEEE
T ss_pred EEEEECHHH----------HHHHHHHHHHCC----CCeEEEEeeEeEcCccCC--ccccccc---ccccccc----ceEE
Confidence 445666654 344445555432 245677788886543221 1111111 1222223 4677
Q ss_pred EEEEEecccHHHHHHHHHHHhccC
Q 008693 516 ISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 516 Is~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
+.+++++++.++++++|.+.....
T Consensus 61 ieivv~d~~v~~vv~~I~~~~~tg 84 (112)
T 1hwu_A 61 IEVVVDDKVVEQAVDAIIKAARTG 84 (112)
T ss_dssp EEEEECGGGHHHHHHHHHHHHCCS
T ss_pred EEEEEcHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999988653
No 114
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=24.38 E-value=3.5e+02 Score=28.78 Aligned_cols=117 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCEEEec-CCCCCCCCeeEecCC--CCCcceeeEEeeec--cEEEEEEEecCc-------------cchhh
Q 008693 349 SMRPAREGDIPVRVKN-SYNPNAPGTLIRRSR--DMSKAVLTSIVLKR--NVTMLDIVSTRM-------------LGQYG 410 (557)
Q Consensus 349 a~~~a~~~~Ipv~I~n-~~~p~~~GT~I~~~~--~~~~~~Vt~Is~~~--nialItI~~~~m-------------~~~~g 410 (557)
+...+.+.|+.+.... ...+.++.|.-..-. +.....|.|.+.-. ++-++.|.+..+ .++||
T Consensus 387 A~~iA~e~Gi~i~~~~~~~~~~~~n~v~v~~~~~~~~~~~v~Gt~~gg~g~~~i~~i~g~~v~~~~~~~~l~v~~~D~PG 466 (529)
T 1ygy_A 387 APALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYVDRPG 466 (529)
T ss_dssp HHHHHHHHSCEEEEEEESCCSSSSEEEEEEEECTTSCEEEEEEEEETTTTEEEEEEETTEEEEEESCSEEEEEEESCCTT
T ss_pred HHHHHHHcCCEEEEEEccCCCCCCCEEEEEEEECCCCEEEEEEEEeCCCCcEEEEEECCEEEEecCCccEEEEEcCCCCc
Q ss_pred HHHHHHHHHHhCCceEEEEE------ccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeeccc
Q 008693 411 FLAKVFSTFEDLGISVDVVA------TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQ 472 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~Is------tSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~ 472 (557)
.++++.+.|.++||||..+. ..+--..+.+++.. .+++-..+++++.+..+...+
T Consensus 467 ~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~-------~~~~l~~l~~~~~i~~v~~v~ 527 (529)
T 1ygy_A 467 ALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDV-------PDDVRTAIAAAVDAYKLEVVD 527 (529)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCC-------CHHHHHHHHHHHTEEEEEEEE
T ss_pred hHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCC-------CHHHHHHHhcCCCccEEEEEe
No 115
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=23.71 E-value=1.8e+02 Score=30.61 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHhCCceEEEEEccCc-------eeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEE
Q 008693 407 GQYGFLAKVFSTFEDLGISVDVVATSEV-------SLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISL 479 (557)
Q Consensus 407 ~~~g~la~If~~L~~~gI~Vd~IstSe~-------sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsI 479 (557)
+.||+++++-..|.+++|+++.+.|.+. .+-++.+... +..+++.+++++....+ ....+++-|
T Consensus 368 d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~-------e~~~~~~~~~~~~~~~v--~~~~~~~r~ 438 (444)
T 3mtj_A 368 DRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTL-------EKNVNAAIAKIEALDAV--AGKVMRIRL 438 (444)
T ss_dssp -CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEE-------HHHHHHHHHHHTTSTTB--CSCCEEEEE
T ss_pred CcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCC-------HHHHHHHHHHHhcCCcc--ccCceEEEE
Q ss_pred Ec
Q 008693 480 IG 481 (557)
Q Consensus 480 VG 481 (557)
.+
T Consensus 439 ~~ 440 (444)
T 3mtj_A 439 ED 440 (444)
T ss_dssp CC
T ss_pred ee
No 116
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=23.00 E-value=2.3e+02 Score=23.93 Aligned_cols=26 Identities=0% Similarity=0.167 Sum_probs=22.6
Q ss_pred eEEEEEEecccHHHHHHHHHHHhccC
Q 008693 514 VNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 514 ~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
..+.++|++++.++++++|.+.-...
T Consensus 47 ~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 47 TTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred EEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 56889999999999999999987644
No 117
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=21.46 E-value=5.7e+02 Score=24.88 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=29.1
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist 431 (557)
-..+++.+. +++|+.+++.+.|+++|+||.-+++
T Consensus 7 ~~vLtv~c~---Dr~GIVa~Vs~~La~~g~NI~d~~q 40 (287)
T 3nrb_A 7 QYVLSLACQ---DAPGIVSEVSTFLFNNGANIVEAEQ 40 (287)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEEECC---CCCCHHHHHHHHHHHCCCCEEeeee
Confidence 356788764 6899999999999999999998875
No 118
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=21.22 E-value=1e+02 Score=27.57 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=33.3
Q ss_pred EEeeCCCccccCCCCCC-CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCC
Q 008693 304 QVWKDVDGVLTCDPNIH-PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366 (557)
Q Consensus 304 ~i~TDVdGV~taDP~~v-~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~ 366 (557)
.+.+|+||+++..-..+ ++.+.+...+..+. .+++.+++.|+++.|.++.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~-------------~~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDA-------------IGISLLKKSGIEVRLISER 61 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHH-------------HHHHHHHHTTCEEEEECSS
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcH-------------HHHHHHHHCCCEEEEEeCc
Confidence 47789999998653322 33444555544443 2688889999998887644
Done!