BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008694
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust.
Identities = 279/555 (50%), Positives = 354/555 (63%), Gaps = 19/555 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A++++ E L +FGV T GLT QV RH+ YG N LP E+ + W+LVL+QF+DL
Sbjct: 1 MEAAHSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDL 60
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSIL 180
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT T +G IRD M
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMA 240
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 241 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 300
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN
Sbjct: 301 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
Query: 357 MSVAKICVVHSVQQGP-IIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
MSV K+ ++ + ++ E+ VTG+TYAPEG V + + Q L+ +A A
Sbjct: 361 MSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKND--KPVRSGQYDGLVELATICA 418
Query: 416 LCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
LCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 419 LCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACNS 473
Query: 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQMCV-----MFSKGAPESVLSRCTNILCNDNG 530
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 474 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 533
Query: 531 FIVPMTANIRAELES 545
VPMT ++ ++ S
Sbjct: 534 --VPMTGPVKEKILS 546
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/557 (50%), Positives = 355/557 (63%), Gaps = 22/557 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A+++S E L +FGV T GLT QV RH+ YG N LP E+ + W+LV++QF+DL
Sbjct: 2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 61
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 62 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 121
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 122 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 181
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT +T +G IRD M
Sbjct: 182 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 241
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 242 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 301
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN
Sbjct: 302 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 361
Query: 357 MSVAKICVVHSVQQGPI--IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
MSV K+ ++ V G + E+ +TG+TYAPEG V + + Q L+ +A
Sbjct: 362 MSVCKMFIIDKV-DGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATIC 418
Query: 415 ALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCN 474
ALCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 419 ALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACN 473
Query: 475 HHWEIEFKKVSILEFSRDRKMMSVLCSHKQMC------VMFSKGAPESVLSRCTNILCND 528
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 474 SVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT 533
Query: 529 NGFIVPMTANIRAELES 545
VPMT ++ ++ S
Sbjct: 534 TR--VPMTGPVKEKILS 548
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 280/557 (50%), Positives = 355/557 (63%), Gaps = 22/557 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A+++S E L +FGV T GLT QV RH+ YG N LP E+ + W+LV++QF+DL
Sbjct: 1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT +T +G IRD M
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 240
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 241 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 300
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICSDKTGTLTTN
Sbjct: 301 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQ 360
Query: 357 MSVAKICVVHSVQQGPI--IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
MSV K+ ++ V G + E+ +TG+TYAPEG V + + Q L+ +A
Sbjct: 361 MSVCKMFIIDKV-DGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATIC 417
Query: 415 ALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCN 474
ALCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 418 ALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACN 472
Query: 475 HHWEIEFKKVSILEFSRDRKMMSVLCSHKQMC------VMFSKGAPESVLSRCTNILCND 528
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 473 SVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT 532
Query: 529 NGFIVPMTANIRAELES 545
VPMT ++ ++ S
Sbjct: 533 TR--VPMTGPVKEKILS 547
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 279/557 (50%), Positives = 354/557 (63%), Gaps = 22/557 (3%)
Query: 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDL 60
ME A+++S E L +FGV T GLT QV RH+ YG N LP E+ + W+LV++QF+DL
Sbjct: 1 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDL 60
Query: 61 LVKILIAAAVISFFLALIN-GETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELR 119
LV+IL+ AA ISF LA GE +TAF+EP E NAE A+E L+
Sbjct: 61 LVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALK 120
Query: 120 AYQADIATVLRNGCFSI--LPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAIL 177
Y+ ++ V R S+ + A ++VPGDIVEV VG K+PAD+R++ + S LRVDQ+IL
Sbjct: 121 EYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSIL 180
Query: 178 TGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSML 237
TGES SV K + + AV QDK N+LFSGT +T +G IRD M
Sbjct: 181 TGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 240
Query: 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGG-FLRGAIHYFKIAV 296
TE + TPL++KLDEFG L+KVI+ ICV VW++NIGHF DP HGG ++RGAI+YFKIAV
Sbjct: 241 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAV 300
Query: 297 ALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNM 356
ALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSLPSVETLGCT+VICS KTGTLTTN
Sbjct: 301 ALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQ 360
Query: 357 MSVAKICVVHSVQQGPI--IAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
MSV K+ ++ V G + E+ +TG+TYAPEG V + + Q L+ +A
Sbjct: 361 MSVCKMFIIDKV-DGDFCSLNEFSITGSTYAPEGEVLKND--KPIRSGQFDGLVELATIC 417
Query: 415 ALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCN 474
ALCN+S L +N KG YEK+GEATE AL L EK+ + + + LSK ERA+ CN
Sbjct: 418 ALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-----FNTEVRNLSKVERANACN 472
Query: 475 HHWEIEFKKVSILEFSRDRKMMSVLCSHKQMC------VMFSKGAPESVLSRCTNILCND 528
KK LEFSRDRK MSV CS + MF KGAPE V+ RC +
Sbjct: 473 SVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGT 532
Query: 529 NGFIVPMTANIRAELES 545
VPMT ++ ++ S
Sbjct: 533 TR--VPMTGPVKEKILS 547
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 153/534 (28%), Positives = 222/534 (41%), Gaps = 64/534 (11%)
Query: 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLV 62
D + S+ E+ +G D ++GLT ++ A + G N L T W +Q
Sbjct: 17 DDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFS 76
Query: 63 KILIAAAVISFFLALINGETGLTAFLEPSXXXXXXXXXXXX--------XXXTETNAEKA 114
+L A++ F I T EP E + K
Sbjct: 77 MLLWIGAILCFLAYGIQAATEE----EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKI 132
Query: 115 LEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQ 174
+E + A V+RNG + A E+V GD+VEV G +IPAD+R+I +N +VD
Sbjct: 133 MESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIIS--ANGCKVDN 190
Query: 175 AILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRD 234
+ LTGES E + S TN + NI F T T MG I
Sbjct: 191 SSLTGES---EPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIAT 247
Query: 235 SMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKI 294
E TP+ +++ F + V + V +I+++ +L I
Sbjct: 248 LASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSL-----ILEYTWLEAVIFL--- 299
Query: 295 AVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTT 354
+ + VA +PEGL A VT CL L KRMAR N +V++L +VETLG T+ ICSDKTGTLT
Sbjct: 300 -IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQ 358
Query: 355 NMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
N M+VA + + + + TT GV FD + L ++R +
Sbjct: 359 NRMTVAHMWSDNQIHEA---------DTTENQSGVSFDKTS---------ATWLALSRIA 400
Query: 415 ALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERAS 471
LCN +V Q N + K G+A+E AL E L S E
Sbjct: 401 GLCNRAVFQANQENLPILKRAVAGDASESALLKCIE-------------LCCGSVKEMRE 447
Query: 472 YCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNIL 525
EI F + + S + + H ++ KGAPE +L RC++IL
Sbjct: 448 RYTKIVEIPFNSTNKYQLSIHKNPNTAEPRH----LLVMKGAPERILDRCSSIL 497
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 152/534 (28%), Positives = 221/534 (41%), Gaps = 64/534 (11%)
Query: 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLV 62
D + S+ E+ +G D ++GLT ++ A + G N L T W +Q
Sbjct: 11 DDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFS 70
Query: 63 KILIAAAVISFFLALINGETGLTAFLEPSXXXXXXXXXXXX--------XXXTETNAEKA 114
+L A++ F I T EP E + K
Sbjct: 71 MLLWIGAILCFLAYGIQAATEE----EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKI 126
Query: 115 LEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQ 174
+E + A V+RNG + A E+V GD+VEV G +IPAD+R+I +N +VD
Sbjct: 127 MESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIIS--ANGCKVDN 184
Query: 175 AILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRD 234
+ LTGES E + S TN + NI F T T MG I
Sbjct: 185 SSLTGES---EPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIAT 241
Query: 235 SMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKI 294
E TP+ +++ F + V + V +I+++ +L I
Sbjct: 242 LASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSL-----ILEYTWLEAVI----F 292
Query: 295 AVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTT 354
+ + VA +PEGL A VT CL L KRMAR N +V++L +VETLG T+ ICS KTGTLT
Sbjct: 293 LIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQ 352
Query: 355 NMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
N M+VA + + + + TT GV FD + L ++R +
Sbjct: 353 NRMTVAHMWSDNQIHEA---------DTTENQSGVSFDKTS---------ATWLALSRIA 394
Query: 415 ALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERAS 471
LCN +V Q N + K G+A+E AL E L S E
Sbjct: 395 GLCNRAVFQANQENLPILKRAVAGDASESALLKCIE-------------LCCGSVKEMRE 441
Query: 472 YCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNIL 525
EI F + + S + + H ++ KGAPE +L RC++IL
Sbjct: 442 RYTKIVEIPFNSTNKYQLSIHKNPNTAEPRH----LLVMKGAPERILDRCSSIL 491
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 152/551 (27%), Positives = 238/551 (43%), Gaps = 70/551 (12%)
Query: 8 SVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVL-PQEKRTAFWKLVLKQFDDLLVKILI 66
SV E+ + TKGL+ S A + G N L P + K + L + +
Sbjct: 57 SVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWV 116
Query: 67 AAAVISFFLALINGETGLTA----FLEPSXXXXXXXX--XXXXXXXTETNAEKALEELRA 120
AAA+ A+ E LT +L + TN + + L
Sbjct: 117 AAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVP 176
Query: 121 YQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGE 180
QA TV+R+G + A +LV GD+VE+ G ++PAD+R+++ + +VD + LTGE
Sbjct: 177 QQA---TVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQ--AQGRKVDNSSLTGE 231
Query: 181 SCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTE 240
S E + S T+ + NI F T T +G I E
Sbjct: 232 S---EPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVE 288
Query: 241 DEVTPLKKKLDEFGTFLA--KVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVAL 298
+E TP+ +++ F +A ++ G + + IG+ FLR + + +A+
Sbjct: 289 NEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGY-------TFLRAMVFF----MAI 337
Query: 299 AVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMS 358
VA +PEGL A VT CL+L KR+A N +V++L +VETLG T+VICSDKTGTLT N M+
Sbjct: 338 VVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMT 397
Query: 359 VAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSALCN 418
V+ + + + TT G FD S + R LCN
Sbjct: 398 VSHLWFDNHIHSA---------DTTEDQSGQTFDQSSETWR---------ALCRVLTLCN 439
Query: 419 ESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475
+ + D K IG+A+E AL +E ++ +A+ + +
Sbjct: 440 RAAFKSGQDAVPVPKRIVIGDASETALLKFSEL-------TLGNAMGYRERFPKVCEIPF 492
Query: 476 HWEIEFK-KVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVP 534
+ +F+ + LE RD + + V+ KGAPE VL RC++IL G +P
Sbjct: 493 NSTNKFQLSIHTLEDPRDPRHVLVM-----------KGAPERVLERCSSILI--KGQELP 539
Query: 535 MTANIRAELES 545
+ R ++
Sbjct: 540 LDEQWREAFQT 550
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 148/538 (27%), Positives = 224/538 (41%), Gaps = 68/538 (12%)
Query: 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLV 62
D + S+ E+ + +G D T+GLT+++ + G N L T W +Q
Sbjct: 47 DDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFS 106
Query: 63 KILIAAAVISFFLALINGETGLTAFLEPSXXXXXXXXXXXX--------XXXTETNAEKA 114
+L A++ F I T EP+ E + +
Sbjct: 107 ILLWIGAILCFLAYGIQAATED----EPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRI 162
Query: 115 LEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQ 174
++ + A V+R+G S + A +V GD+VEV G +IPAD+R+I ++ +VD
Sbjct: 163 MDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIIS--AHGCKVDN 220
Query: 175 AILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRD 234
+ LTGES E + S ++ + NI F T T MG I
Sbjct: 221 SSLTGES---EPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIAT 277
Query: 235 SMLQTEDEVTPLKKKLDEFGTFLA--KVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYF 292
E TP+ +++ F + V G+ + + +G+ +L I
Sbjct: 278 LASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGY-------SWLEAVIFL- 329
Query: 293 KIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTL 352
+ + VA +PEGL A VT CL L KRMAR N +V++L +VETLG T+ ICSDKTGTL
Sbjct: 330 ---IGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTL 386
Query: 353 TTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIAR 412
T N M+VA + + + + TT G FD + ++R
Sbjct: 387 TQNRMTVAHMWFDNQIHEA---------DTTENQSGAAFDKTSATWS---------ALSR 428
Query: 413 CSALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHER 469
+ALCN +V Q D K G+A+E AL E S M ++ +
Sbjct: 429 IAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELC-------CGSVQGMRDRNPK 481
Query: 470 ASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCN 527
EI F + + S S + + VM KGAPE +L RC+ IL N
Sbjct: 482 IV------EIPFNSTNKYQLSIHENEKS--SESRYLLVM--KGAPERILDRCSTILLN 529
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 187/415 (45%), Gaps = 44/415 (10%)
Query: 14 DFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISF 73
D D GLT +V + R YG N + +EK F K L F + ++ AAV++
Sbjct: 78 DMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKF-LGFFVGPIQFVMEGAAVLA- 135
Query: 74 FLALINGETGLTAFLEPSXXXXXXXXXXXXXXXTETNAEKALEELRAYQADIATVLRNGC 133
GL +++ E A ++EL+ A A VLR+G
Sbjct: 136 --------AGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGT 187
Query: 134 FSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKEL-DSII 192
+ A E+VPGDI++V G IPAD R++ L+VDQ+ LTGES +V+K D +
Sbjct: 188 LKEIEAPEVVPGDILQVEEGTIIPADGRIVTD-DAFLQVDQSALTGESLAVDKHKGDQVF 246
Query: 193 ATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTEDEVTPLKKKLDE 252
A++AV + + ++ + T NT +G + + L+
Sbjct: 247 ASSAVKRGEAFVVITATGD--------------NTFVGRAAALVNAASGGSGHFTEVLNG 292
Query: 253 FGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVT 312
GT L ++ ++VW+ + + +P + + +A+ + +P GLPAVVT
Sbjct: 293 IGTILLILVIFTLLIVWVSSF-YRSNP--------IVQILEFTLAITIIGVPVGLPAVVT 343
Query: 313 TCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGP 372
T +A+G +A+ AIV+ L ++E+L ++CSDKTGTLT N +S+ V V
Sbjct: 344 TTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPED 403
Query: 373 IIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARC-SALCNESVLQYNP 426
++ +T A GI A L L + R S L VLQ++P
Sbjct: 404 LM----LTACLAASR----KKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHP 450
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 26/235 (11%)
Query: 128 VLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKE 187
VLR+G +S AA LVPGDIV + +G IPAD R++E + L+VDQ+ LTGES V K
Sbjct: 134 VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLE--GDPLKVDQSALTGESLPVTKH 191
Query: 188 LDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTEDEVTPLK 247
+FSG+ +T G ++ + ++V +
Sbjct: 192 -------------PGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAA-HLVDSTNQVGHFQ 237
Query: 248 KKLDEFGTF-LAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEG 306
K L G F + + G+ + + ++ P R I + L + IP
Sbjct: 238 KVLTAIGNFCICSIAIGMVIEIIVMY------PIQRRKYRDGIDNL---LVLLIGGIPIA 288
Query: 307 LPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAK 361
+P V++ +A+G+ R+++ AI + + ++E + V+CSDKTGTLT N +SV K
Sbjct: 289 MPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDK 343
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/48 (87%), Positives = 47/48 (97%)
Query: 285 LRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSL 332
+RGAI+YFKIAVALAVAAIPEGLPAV+TTCLALGT+RMA+ NAIVRSL
Sbjct: 1 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 28/243 (11%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRV 172
+A+++L QA A V+R+G +P E+ GDIV V G KIP D ++E + V
Sbjct: 200 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE---GESYV 256
Query: 173 DQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSI 232
D+++++GE V K K + +F T T + I
Sbjct: 257 DESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGETLLAQI 303
Query: 233 RDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGA--IH 290
+ P+++ D KV+A V +V I F + F+ A +
Sbjct: 304 VKLVEDAMGSKPPIQRLAD-------KVVAYFIPTVLLVAISAF---IYWYFIAHAPLLF 353
Query: 291 YFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTG 350
F +A+ V A P T L +G + A L ++++ ++E T + DKTG
Sbjct: 354 AFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTG 413
Query: 351 TLT 353
TLT
Sbjct: 414 TLT 416
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 28/243 (11%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRV 172
+A+++L QA A V+R+G +P E+ GDIV V G KIP D ++E + V
Sbjct: 122 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE---GESYV 178
Query: 173 DQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTXXXXXXXXXXXXXXXXNTAMGSI 232
D+++++GE V K K + +F T T + I
Sbjct: 179 DESMISGEPVPVLK-------------SKGDEVFGATINNTGVLKIRATRVGGETLLAQI 225
Query: 233 RDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGA--IH 290
+ P+++ D KV+A V +V I F + F+ A +
Sbjct: 226 VKLVEDAMGSKPPIQRLAD-------KVVAYFIPTVLLVAISAF---IYWYFIAHAPLLF 275
Query: 291 YFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTG 350
F +A+ V A P T L +G + A L ++++ ++E T + DKTG
Sbjct: 276 AFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTG 335
Query: 351 TLT 353
TLT
Sbjct: 336 TLT 338
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 240 EDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGH 275
E + TPL++KLDEFG L+KVI+ ICV VW++NIGH
Sbjct: 1 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 36
>pdb|2VOY|B Chain B, Cryoem Model Of Copa, The Copper Transporting Atpase
From Archaeoglobus Fulgidus
Length = 42
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 36 YGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLA 76
YG N LP E+ + W+LV++QF+DLLV+IL+ AA ISF LA
Sbjct: 1 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA 41
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRV 172
+A+++L QA A V+R+G +P E+ GDIV V G KIP D ++E + V
Sbjct: 1 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE---GESYV 57
Query: 173 DQAILTGESCSVEK 186
D+++++GE V K
Sbjct: 58 DESMISGEPVPVLK 71
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 113 KALEELRAYQADIATVLRNGCFSILPAAELVP------GDIVEVNVGCKIPADMRMIEML 166
+AL +L + QA AT++ +IL + E V GDI++V G K P D R+IE
Sbjct: 7 EALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGH 66
Query: 167 SNQLRVDQAILTGESCSVEKELDSIIATNAVYQD 200
S VD++++TGE+ V K+ S + ++ Q+
Sbjct: 67 S---MVDESLITGEAMPVAKKPGSTVIAGSINQN 97
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 25/220 (11%)
Query: 145 GDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNI 204
GD++ V G KIP D E+ + VD++++TGE V KE + + + Q + +
Sbjct: 247 GDLLRVRPGEKIPVDG---EVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFV 303
Query: 205 LFSGTXXXXXXXXXXXXXXXXNTAMGSIRDSMLQTEDEVTPLKKKLDEFGTFLAKVIAGI 264
+ +T + I + + P+++ D + + +
Sbjct: 304 M-------------KALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILV 350
Query: 265 CVLVWIVNIGHFRDPSHGGFLRGAIHYFKIA-VALAVAAIPEGLPAVVTTCLALGTKRMA 323
VL +IV P A+ Y IA V++ + A P L + +G + A
Sbjct: 351 AVLSFIVWALLGPQP--------ALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGA 402
Query: 324 RLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKIC 363
+ ++++ ++E + + DKTGTLT + +I
Sbjct: 403 QSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIV 442
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 41/193 (21%)
Query: 356 MMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCSA 415
MM+VA + + + + TT G FD P ++R +
Sbjct: 1 MMTVAHMWFDNQIHEA---------DTTEDQSGATFDKRS---------PTWTALSRIAG 42
Query: 416 LCNESVL---QYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASY 472
LCN +V Q N + G+A+E AL E S S M ++ + +
Sbjct: 43 LCNRAVFKAGQENISVSKRDTAGDASESALLKCIEL-------SCGSVRKMRDRNPKVA- 94
Query: 473 CNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFI 532
EI F + + S + + Q V+ KGAPE +L RC++IL G
Sbjct: 95 -----EISFNSTNKYQLSIHERE-----DNPQSHVLVMKGAPERILDRCSSILV--QGKE 142
Query: 533 VPMTANIRAELES 545
+P+ ++ ++
Sbjct: 143 IPLDKEMQDAFQN 155
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 38/174 (21%)
Query: 355 NMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHIARCS 414
N M+VA + + + + TT GV FD + ++R +
Sbjct: 2 NPMTVAHMWFDNQIHEA---------DTTENQSGVSFDKTSA---------TWFALSRIA 43
Query: 415 ALCNESVLQYNPDKGNYEK---IGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERAS 471
LCN +V Q N + K G+A+E AL E S + M K+ +
Sbjct: 44 GLCNRAVFQANQENLPILKRAVAGDASESALLKCIEVC-------CGSVMEMREKYTKIV 96
Query: 472 YCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQMCVMFSKGAPESVLSRCTNIL 525
EI F + + S + + K + VM KGAPE +L RC++IL
Sbjct: 97 ------EIPFNSTNKYQLSIHKNPNA--SEPKHLLVM--KGAPERILDRCSSIL 140
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 437 ATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASY 472
A +R +AEK+GLP F S+PS + + S H +Y
Sbjct: 105 AAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAY 140
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 11/60 (18%)
Query: 481 FKKVSILEFSRDRKMMSVLCS-----HKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPM 535
++K+ + F +R+ MSV+ + H+ +C KGA + +L+ C+ + NG IVP+
Sbjct: 56 WQKIDEIPFDFERRRMSVVVAENTEHHQLVC----KGALQEILNVCSQV--RHNGEIVPL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,210,730
Number of Sequences: 62578
Number of extensions: 525550
Number of successful extensions: 1241
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 33
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)