Query 008694
Match_columns 557
No_of_seqs 183 out of 1851
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 09:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ar4_A Sarcoplasmic/endoplasmi 100.0 6.8E-80 2.3E-84 707.7 53.7 547 1-556 2-561 (995)
2 3ixz_A Potassium-transporting 100.0 6.8E-76 2.3E-80 675.5 50.4 498 3-555 52-560 (1034)
3 2zxe_A Na, K-ATPase alpha subu 100.0 8.9E-76 3E-80 673.4 49.4 499 3-556 47-556 (1028)
4 1mhs_A Proton pump, plasma mem 100.0 1.5E-67 5.3E-72 591.0 34.4 434 12-556 76-511 (920)
5 3b8c_A ATPase 2, plasma membra 100.0 7.3E-68 2.5E-72 594.1 -14.8 441 3-555 13-455 (885)
6 3rfu_A Copper efflux ATPase; a 100.0 8.4E-47 2.9E-51 416.0 35.7 255 86-363 186-442 (736)
7 3j08_A COPA, copper-exporting 100.0 7.9E-46 2.7E-50 405.5 33.1 256 86-365 95-350 (645)
8 3j09_A COPA, copper-exporting 100.0 7.6E-46 2.6E-50 411.0 30.9 256 86-365 173-428 (723)
9 2hc8_A PACS, cation-transporti 99.9 5.6E-26 1.9E-30 190.4 10.8 110 114-239 2-111 (113)
10 2kij_A Copper-transporting ATP 99.9 4.1E-25 1.4E-29 188.5 9.9 116 108-239 2-123 (124)
11 3gwi_A Magnesium-transporting 99.7 6.3E-17 2.2E-21 146.2 7.5 97 435-556 33-130 (170)
12 2yj3_A Copper-transporting ATP 98.0 7.3E-09 2.5E-13 100.7 0.0 46 318-363 5-50 (263)
13 3a1c_A Probable copper-exporti 98.1 4.4E-06 1.5E-10 81.9 8.7 48 317-364 8-55 (287)
14 3skx_A Copper-exporting P-type 96.8 0.00043 1.5E-08 66.8 2.8 38 329-366 1-38 (280)
15 1svj_A Potassium-transporting 91.4 1.2 4.1E-05 38.6 9.8 81 435-554 50-132 (156)
16 4fe3_A Cytosolic 5'-nucleotida 90.4 0.061 2.1E-06 52.4 0.6 38 323-361 17-63 (297)
17 3ixz_A Potassium-transporting 67.2 57 0.0019 37.2 14.1 66 89-154 145-220 (1034)
18 2jmz_A Hypothetical protein MJ 66.3 5.1 0.00017 35.6 4.2 35 125-159 104-138 (186)
19 2lcj_A PAB POLC intein; hydrol 56.2 13 0.00044 32.9 5.0 34 125-158 94-127 (185)
20 1at0_A 17-hedgehog; developmen 37.4 68 0.0023 26.9 6.3 28 126-153 74-103 (145)
21 3ar4_A Sarcoplasmic/endoplasmi 35.8 1.5E+02 0.0052 33.5 10.7 22 130-151 147-168 (995)
22 2kmv_A Copper-transporting ATP 35.4 18 0.00063 31.9 2.4 15 350-364 1-15 (185)
23 2k1g_A Lipoprotein SPR; soluti 28.7 24 0.00083 29.4 1.9 21 135-155 61-81 (135)
24 3osx_A 60 kDa chaperonin; alph 28.4 45 0.0015 29.6 3.6 56 494-552 141-196 (201)
25 1h1j_S THO1 protein; SAP domai 26.8 33 0.0011 23.2 2.0 33 1-36 2-38 (51)
26 3m6c_A 60 kDa chaperonin 1; ch 26.7 54 0.0019 29.0 3.9 56 494-552 134-189 (194)
27 2z1c_A Hydrogenase expression/ 23.3 1.4E+02 0.0047 21.9 4.9 31 124-154 15-48 (75)
28 3ewi_A N-acylneuraminate cytid 23.1 29 0.00099 30.0 1.4 23 336-358 4-26 (168)
29 1d1n_A Initiation factor 2; be 22.9 81 0.0028 24.6 3.8 20 138-157 78-97 (99)
30 3mn1_A Probable YRBI family ph 21.0 48 0.0016 28.9 2.5 25 333-357 11-35 (189)
31 3mmz_A Putative HAD family hyd 20.6 51 0.0017 28.3 2.6 24 335-358 6-29 (176)
No 1
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=100.00 E-value=6.8e-80 Score=707.74 Aligned_cols=547 Identities=53% Similarity=0.807 Sum_probs=447.8
Q ss_pred ChhhhcCCHHHHHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Q 008694 1 MEDAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALING 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (557)
|++||.+++++++++|++++.+||+++|+++|+++||+|+++.++++++|+++++||+++++.++++++++++++++...
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~ 81 (995)
T 3ar4_A 2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE 81 (995)
T ss_dssp CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCC
T ss_pred cchhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999998888999999999999999999999999998876542
Q ss_pred -CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCe--EEEeeCCCcCCCcEEEEcCCCccc
Q 008694 81 -ETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGC--FSILPAAELVPGDIVEVNVGCKIP 157 (557)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~--~~~i~~~~l~~GDIv~l~~g~~vP 157 (557)
......|+++++++++++++..++.++++++++.+++++++.+++++|+|||+ .++|++++|+|||||.|++||+||
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IP 161 (995)
T 3ar4_A 82 GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVP 161 (995)
T ss_dssp SSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCC
T ss_pred cccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCccc
Confidence 11234677888888888999999999999999999999999999999999887 699999999999999999999999
Q ss_pred cceEEeeecCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhc
Q 008694 158 ADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSML 237 (557)
Q Consensus 158 aD~ill~~~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~ 237 (557)
|||+|++..+++|.||||+|||||.|+.|.+++....+....+++|++|+||.+.+|++.++|++||.+|.+|++.+.+.
T Consensus 162 aD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~~~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~~~~ 241 (995)
T 3ar4_A 162 ADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMA 241 (995)
T ss_dssp SEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGCTTEECTTCEEEECEEEEEEEECGGGSHHHHHHHHHH
T ss_pred ccEEEEEEeeceEEEEcccccCCCcceeccccccCCcccCcccccceEecCCEEEcceEEEEEEEcCcchHHHHHHHHhh
Confidence 99999876678999999999999999999988654445556677899999999999999999999999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-cchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 008694 238 QTEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHG-GFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLA 316 (557)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~ 316 (557)
.++.+++|+++.+++++.++..+++++++++|+++...+.+.... .|+..+...|..++++++++||++||+++++++.
T Consensus 242 ~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~l~v~aiP~~Lp~~vt~~la 321 (995)
T 3ar4_A 242 ATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLA 321 (995)
T ss_dssp TCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSSSSCHHHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 988999999999999999999988888888877654323221111 2444455567788999999999999999999999
Q ss_pred HHHHHHHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEecccccCc-ceeeeeeeccccCCCCccccCCC
Q 008694 317 LGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGP-IIAEYGVTGTTYAPEGVVFDSSG 395 (557)
Q Consensus 317 ~~~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 395 (557)
+++.+|+++|+++|+++++|+||++++||||||||||+|+|+|++++..+..+..+ ....+..++..++|.+.......
T Consensus 322 ~~~~~ma~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 401 (995)
T 3ar4_A 322 LGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDK 401 (995)
T ss_dssp HHHHHHHHTTEEESCTTHHHHHHTCCEEEEESTTTTBCCCCEEEEEEEEEEEETTEEEEEEEEECCSSSSSCCCEEETTE
T ss_pred HHHHHhccCCcEeccchhhhhhcCceEEEecCCCCcccCceEEEEEEecCcccCcccccceeeccCCCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999998865432110 11123345555666533221100
Q ss_pred ccccCCCChHHHHHHHHHhcccccceeeccCCCCcceecCChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhccccccc
Q 008694 396 IQLEFPAQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475 (557)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~lC~~~~~~~~~~~~~~~~~~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (557)
.......+.+..++.++++||++.+..+++...+...|+|+|.|++.++++.|+ +... ...+...... ..+..
T Consensus 402 --~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~~~~~~~g~p~E~Al~~~a~~~g~-~~~~-~~~i~~~~~~---~~~~~ 474 (995)
T 3ar4_A 402 --PIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNV-FNTE-VRNLSKVERA---NACNS 474 (995)
T ss_dssp --ECCGGGCHHHHHHHHHHHHSCCCEEEEETTTTEEEEESCHHHHHHHHHHHHHCT-TCCC-CTTSCTTTST---THHHH
T ss_pred --cccccccHHHHHHHHHHHHcCCCcccccCCCCceeecCCccHHHHHHHHHHcCC-cccc-cccccccccc---ccchh
Confidence 001112345677888999999988765544555667799999999999999887 2111 0000000000 00000
Q ss_pred ccccccceeeeecCCccCceEEEEEeeCC------eEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHH
Q 008694 476 HWEIEFKKVSILEFSRDRKMMSVLCSHKQ------MCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNR 549 (557)
Q Consensus 476 ~~~~~~~il~~~~F~s~rk~mSVvv~~~~------~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 549 (557)
..+..|++++++||+|+||||||+++.++ +..+|+|||||.|+++|+++.. ++...+++++.|+++.+++++
T Consensus 475 ~~~~~~~~~~~~pF~s~rk~msvi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~~--~~~~~~l~~~~~~~~~~~~~~ 552 (995)
T 3ar4_A 475 VIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRV--GTTRVPMTGPVKEKILSVIKE 552 (995)
T ss_dssp HHHHHEEEEEEEEEETTTTEEEEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEEE--TTEEEECCHHHHHHHHHHHHH
T ss_pred hhhhhCceEEEeecCCCCCeeEEEEecCCCCccccceEEEEcCCHHHHHHhcchhhc--CCCcccCCHHHHHHHHHHHHH
Confidence 12467899999999999999999999743 4789999999999999999875 567889999999999999999
Q ss_pred H--Hhhhcc
Q 008694 550 L--DNSILY 556 (557)
Q Consensus 550 ~--~~~gl~ 556 (557)
| +++|+.
T Consensus 553 ~~~a~~GlR 561 (995)
T 3ar4_A 553 WGTGRDTLR 561 (995)
T ss_dssp HHHSTTCCE
T ss_pred HHhhhccce
Confidence 9 899973
No 2
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=100.00 E-value=6.8e-76 Score=675.47 Aligned_cols=498 Identities=28% Similarity=0.386 Sum_probs=423.5
Q ss_pred hhhcCCHHHHHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC--
Q 008694 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALING-- 80 (557)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 80 (557)
+||.+++++++++|++++++|||++|+++|+++||+|+++.++.+++|+.+++||++++.++++++++++++...+..
T Consensus 52 ~~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~ 131 (1034)
T 3ixz_A 52 NDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQASE 131 (1034)
T ss_pred chhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999999999999999999999999999998999999999999999999999999999887764421
Q ss_pred --CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCcccc
Q 008694 81 --ETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPA 158 (557)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPa 158 (557)
......++.+++++++++++..+++++++|+++.++++++..+.+++|+|||++++|++++|+|||||.|++||+|||
T Consensus 132 ~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPA 211 (1034)
T 3ixz_A 132 GDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPA 211 (1034)
T ss_pred CCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecC
Confidence 112235677888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeecCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhcc
Q 008694 159 DMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQ 238 (557)
Q Consensus 159 D~ill~~~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~ 238 (557)
||+|++ ++++.||||+|||||.|+.|.++... ..+.+..|++|+||.+.+|++.++|++||.+|.+|++.+.+..
T Consensus 212 D~~ll~--~~~l~VdES~LTGES~pv~K~~~~~~---~~~~~~~n~~f~GT~v~~G~~~~vVv~tG~~T~~GkI~~~~~~ 286 (1034)
T 3ixz_A 212 DIRILQ--AQGRKVDNSSLTGESEPQTRSPECTH---ESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASG 286 (1034)
T ss_pred CeEEEE--eCCceEEecccCCCCCCeeccCCCcc---ccccccccceecceeEEeecceEEEEeehhhhHhhHHHHhhcc
Confidence 999998 56789999999999999999887432 2334678999999999999999999999999999999999988
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 008694 239 TEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALG 318 (557)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~ 318 (557)
.+.+++|+++.++++..++..+++++++++++++.... ..+...+.+++++++++||++||+++++++.++
T Consensus 287 ~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~l~v~~iPe~Lp~~vti~la~~ 357 (1034)
T 3ixz_A 287 VENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIG---------YTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLT 357 (1034)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------chHHHHHHHHHHHHHheeccccHHHHHHHHHHH
Confidence 88899999999999999998888887777776654321 135567788899999999999999999999999
Q ss_pred HHHHHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEecccccCcceeeeeeeccccCCCCccccCCCccc
Q 008694 319 TKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQL 398 (557)
Q Consensus 319 ~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (557)
+.+|+++|+++|+++++|+||++++||||||||||+|+|+|+++++.+..+..+. . .++.+.
T Consensus 358 ~~rmak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~~~~~~~~~~~~--------~-~~~~~~--------- 419 (1034)
T 3ixz_A 358 AKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADT--------T-EDQSGQ--------- 419 (1034)
T ss_pred HHHHhhCCeEecChHHHHhhcCCcEEEcCCCCCcccCeEEEEEEEECCccccccC--------c-cccccc---------
Confidence 9999999999999999999999999999999999999999999998765332110 0 000000
Q ss_pred cCCCChHHHHHHHHHhcccccceeeccCCC---CcceecCChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhccccccc
Q 008694 399 EFPAQLPCLLHIARCSALCNESVLQYNPDK---GNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475 (557)
Q Consensus 399 ~~~~~~~~~~~~~~~~~lC~~~~~~~~~~~---~~~~~~~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (557)
......+.+..++.++++||++....+.+. ......|+|+|.|+++++...+... .
T Consensus 420 ~~~~~~~~~~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~~---------------------~ 478 (1034)
T 3ixz_A 420 TFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNA---------------------M 478 (1034)
T ss_pred ccCcCCHHHHHHHHHHHHhccceeccCcCCCcccCceeccCchHHHHHHHHHHhCCCh---------------------H
Confidence 011123355667889999999876533221 2345679999999999998766421 1
Q ss_pred ccccccceeeeecCCccCceEEEEEeeC----CeEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHH
Q 008694 476 HWEIEFKKVSILEFSRDRKMMSVLCSHK----QMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLD 551 (557)
Q Consensus 476 ~~~~~~~il~~~~F~s~rk~mSVvv~~~----~~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 551 (557)
..+..|++++++||||.||||+++++.+ +++++|+|||||.|+++|+++.. +|...+++++.|+.+.+.+++|+
T Consensus 479 ~~~~~~~~~~~~pF~s~rk~m~~v~~~~~~~~~~~~l~~KGApe~il~~c~~~~~--~~~~~~l~~~~~~~~~~~~~~~a 556 (1034)
T 3ixz_A 479 GYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILI--KGQELPLDEQWREAFQTAYLSLG 556 (1034)
T ss_pred HHHHhCcceEEeeecCCCceEEEEEEecCCCCccEEEEEeCChHHHHHHhHHhhc--CCceecCCHHHHHHHHHHHHHHH
Confidence 1146789999999999999999888753 36899999999999999999875 78889999999999999999999
Q ss_pred hhhc
Q 008694 552 NSIL 555 (557)
Q Consensus 552 ~~gl 555 (557)
.+|+
T Consensus 557 ~~G~ 560 (1034)
T 3ixz_A 557 GLGE 560 (1034)
T ss_pred hcCc
Confidence 9997
No 3
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=100.00 E-value=8.9e-76 Score=673.37 Aligned_cols=499 Identities=29% Similarity=0.386 Sum_probs=420.8
Q ss_pred hhhcCCHHHHHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc---
Q 008694 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALIN--- 79 (557)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 79 (557)
+||..++++++++|++++.+||+++|+++|+++||+|+++.++.+++|+.++++|+++++++++++++++++++.+.
T Consensus 47 ~~~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~ 126 (1028)
T 2zxe_A 47 DDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAAT 126 (1028)
T ss_dssp CCSSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhCCHHHHHHHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccc
Confidence 68999999999999999989999999999999999999999888899999999999999999999999998886543
Q ss_pred C-CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCcccc
Q 008694 80 G-ETGLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPA 158 (557)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPa 158 (557)
+ ..+...++.+++++++++++.++++++++|+++.+++++++.+.+++|+|||++++|++++|+|||||.|++||+|||
T Consensus 127 ~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPa 206 (1028)
T 2zxe_A 127 EDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPA 206 (1028)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGCCTTCEEEEETTCBCCS
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHCCcCCEEEECCCCEeec
Confidence 1 112235777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeecCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhcc
Q 008694 159 DMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQ 238 (557)
Q Consensus 159 D~ill~~~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~ 238 (557)
||+|++ +.++.||||+|||||.|+.|.++... ..+.+..|++|+||.+.+|++.++|++||.+|.+|++.+.+..
T Consensus 207 D~~ll~--g~~~~VdeS~LTGES~pv~K~~~~~~---~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~~~~~ 281 (1028)
T 2zxe_A 207 DLRIIS--AHGCKVDNSSLTGESEPQTRSPEFSS---ENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASG 281 (1028)
T ss_dssp EEEEEE--EEEEEEECHHHHSCCSCEECCSSCCC---SSTTTCSSEECTTCEEEEEEEEEEEEECGGGSHHHHHHHHHHH
T ss_pred eEEEEe--eCcEEEEcCccCCCCcceecccCCCC---CCcccccceEEeCceEEcceEEEEEEEeccccHHHHHHHhccC
Confidence 999997 33689999999999999999987532 1245778999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 008694 239 TEDEVTPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALG 318 (557)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~ 318 (557)
++.+++|+++.+++++.+++.++++++++++++..... ..+...+.+++++++++||++||+++++++.++
T Consensus 282 ~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~i~llv~~iP~~Lp~~vti~l~~~ 352 (1028)
T 2zxe_A 282 LEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILG---------YSWLEAVIFLIGIIVANVPEGLLATVTVCLTLT 352 (1028)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------CcHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 89999999999999999999888888887776643211 123456677888999999999999999999999
Q ss_pred HHHHHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEecccccCcceeeeeeeccccCCCCccccCCCccc
Q 008694 319 TKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQL 398 (557)
Q Consensus 319 ~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (557)
+.+|+++|+++|+++++|+||++++||||||||||+|+|+|.+++..+..+.. .+.. .+.+.
T Consensus 353 ~~~mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~--------~~~~-~~~~~--------- 414 (1028)
T 2zxe_A 353 AKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEA--------DTTE-NQSGA--------- 414 (1028)
T ss_dssp HHHHHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEEEETTEEEEC--------CCCT-TCCSC---------
T ss_pred HHHHhhCCceeccchHhhhhcCceEEeccCCCCCCCCeEEEEEEEECCeeeec--------cCCC-Ccccc---------
Confidence 99999999999999999999999999999999999999999999876542211 0000 00000
Q ss_pred cCCCChHHHHHHHHHhcccccceeeccCCC---CcceecCChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhccccccc
Q 008694 399 EFPAQLPCLLHIARCSALCNESVLQYNPDK---GNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNH 475 (557)
Q Consensus 399 ~~~~~~~~~~~~~~~~~lC~~~~~~~~~~~---~~~~~~~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (557)
......+....++.+.++||++.+..+.+. ...+..|||+|.|+++++++.|... .
T Consensus 415 ~~~~~~~~~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~---------------------~ 473 (1028)
T 2zxe_A 415 AFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSV---------------------Q 473 (1028)
T ss_dssp CCCSSCHHHHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCH---------------------H
T ss_pred ccccCCHHHHHHHHHHHhcCCCeeecCCCCCccccceeCCCchHHHHHHHHHHhCCCH---------------------H
Confidence 001122345567788999999876532211 1234569999999999998764210 0
Q ss_pred ccccccceeeeecCCccCceEEEEEeeC----CeEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHH
Q 008694 476 HWEIEFKKVSILEFSRDRKMMSVLCSHK----QMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLD 551 (557)
Q Consensus 476 ~~~~~~~il~~~~F~s~rk~mSVvv~~~----~~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 551 (557)
..+..|++++++||||.|||||++++.+ +++++|+|||||.|+++|+++.. +|...+++++.++.+.+.+++|+
T Consensus 474 ~~~~~~~~~~~~pF~s~rk~msvi~~~~~~~~~~~~~~~KGA~e~il~~c~~~~~--~g~~~~l~~~~~~~~~~~~~~~a 551 (1028)
T 2zxe_A 474 GMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILL--NGAEEPLKEDMKEAFQNAYLELG 551 (1028)
T ss_dssp HHHHHSCEEEEECCCTTTCEEEEEEECSCTTTCCEEEEEEECHHHHHTTEEEECB--TTBCCBCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCceEEEeccCcccceEEEEEeccCCCCCcEEEEEeCCcHHHHHHhhhhhc--CCCcccCCHHHHHHHHHHHHHHH
Confidence 1145689999999999999999999963 47899999999999999998865 78889999999999999999999
Q ss_pred hhhcc
Q 008694 552 NSILY 556 (557)
Q Consensus 552 ~~gl~ 556 (557)
++|+.
T Consensus 552 ~~G~R 556 (1028)
T 2zxe_A 552 GLGER 556 (1028)
T ss_dssp HTTCE
T ss_pred hcCCE
Confidence 99973
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=100.00 E-value=1.5e-67 Score=590.99 Aligned_cols=434 Identities=28% Similarity=0.399 Sum_probs=366.2
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCccccchhhHH
Q 008694 12 VLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGETGLTAFLEPS 91 (557)
Q Consensus 12 ~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (557)
+.+.|++++.+||+++|+++|+++||+|+++.++ .++|..++.+|++++.++++++++++++++ .|.++.
T Consensus 76 ~~~~l~t~~~~GLs~~ea~~r~~~~G~N~l~~~~-~~~~~~~l~~f~~~~~~ll~~aai~s~~~g---------~~~~~~ 145 (920)
T 1mhs_A 76 PEDMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEK-ENHFLKFLGFFVGPIQFVMEGAAVLAAGLE---------DWVDFG 145 (920)
T ss_dssp SSTTTTTCCCCCCCSHHHHHHHHHTSSSSCCCCC-CSSHHHHTHHHHHHHHHHHHHHHHHCTTCS---------CSSHHH
T ss_pred HHHHhCCCcCCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHH
Confidence 4567899988999999999999999999999765 557888999999999888888777765542 466667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccceEEeeecCC-ee
Q 008694 92 VILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSN-QL 170 (557)
Q Consensus 92 ~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD~ill~~~~g-~~ 170 (557)
+++++++++..++.++++++++.++++++..+.+++|+|||++++|++++|+|||||.|++||+|||||+|++ +. .+
T Consensus 146 ~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~--g~~~l 223 (920)
T 1mhs_A 146 VICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVT--DDAFL 223 (920)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEE--ESSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEe--cCcee
Confidence 7778888899999999999999999999998999999999999999999999999999999999999999997 23 37
Q ss_pred EEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhcccCCCCChhHHHH
Q 008694 171 RVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTPLKKKL 250 (557)
Q Consensus 171 ~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~~~~~~~~~~~~ 250 (557)
.||||+|||||.|+.|.++ |.+|+||.+.+|++.++|++||.+|.+|++.+.+..++.+++++++.+
T Consensus 224 ~VDES~LTGES~PV~K~~g-------------d~v~sGT~v~~G~~~~~V~~tG~~T~~g~I~~lv~~a~~~~~~l~~~~ 290 (920)
T 1mhs_A 224 QVDQSALTGESLAVDKHKG-------------DQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVL 290 (920)
T ss_dssp EEBCTTTSSCCCCEECCSS-------------CEECSCBCCSCCCEEEEEEECSTTCSTTTTTSSCCCCCCCCCHHHHHH
T ss_pred eeeccccCCCCcceEecCC-------------CeeecCceEecceEEEEEEEeCCcCHHHHHHHHHhhcccCCchHHHHH
Confidence 9999999999999999876 699999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcCceee
Q 008694 251 DEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVR 330 (557)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~~~~~~~~~i~~~ 330 (557)
+++..+++++++++++++|+.++. .. ..+...+.+++++++++||++||+++++++.+++.+|+++|+++|
T Consensus 291 ~~i~~~l~~~~~~~~~i~~~~~~~--~~-------~~~~~~l~~av~llV~aiP~aLp~~vti~la~g~~~mak~~ilvk 361 (920)
T 1mhs_A 291 NGIGTILLILVIFTLLIVWVSSFY--RS-------NPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQ 361 (920)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT--TT-------CCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cC-------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 999988887777776666554321 10 134566778899999999999999999999999999999999999
Q ss_pred cchhhhhcccccEEEecCCCccCCCccEEEEEEEecccccCcceeeeeeeccccCCCCccccCCCccccCCCChHHHHHH
Q 008694 331 SLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFPAQLPCLLHI 410 (557)
Q Consensus 331 ~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (557)
+++++|+||++|+||||||||||+|+|+|.+++..++ +++ . ++
T Consensus 362 ~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~~~~g----------------~~~------------------~---~l 404 (920)
T 1mhs_A 362 KLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAG----------------VDP------------------E---DL 404 (920)
T ss_dssp CTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCBCCSC----------------CCC------------------T---HH
T ss_pred cCchhhhhccCcEEEECCCCCccccceeEEEEeecCC----------------CCH------------------H---HH
Confidence 9999999999999999999999999999988754221 000 0 13
Q ss_pred HHHhcccccceeeccCCCCcceecCChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhcccccccccccccceeeeecCC
Q 008694 411 ARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFS 490 (557)
Q Consensus 411 ~~~~~lC~~~~~~~~~~~~~~~~~~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~F~ 490 (557)
+.+.++|++... ..++|+|.|+++++++.+... .....|++++.+||+
T Consensus 405 l~~a~l~~~~~~----------~~~~P~e~Al~~~~~~~~~~~----------------------~~~~~~~~~~~~pF~ 452 (920)
T 1mhs_A 405 MLTACLAASRKK----------KGIDAIDKAFLKSLKYYPRAK----------------------SVLSKYKVLQFHPFD 452 (920)
T ss_dssp HHHHHHSCCCSS----------CSCCSHHHHHHHHHHHSSSCC----------------------GGGSCCCEEEEEEEE
T ss_pred HHHHHHhcCCcc----------cCCChHHHHHHHHHHhcccch----------------------hhccccceeEEeecc
Confidence 345567765321 014999999999998765310 013468899999999
Q ss_pred ccCceEEEEEeeCC-eEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHHhhhcc
Q 008694 491 RDRKMMSVLCSHKQ-MCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSILY 556 (557)
Q Consensus 491 s~rk~mSVvv~~~~-~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~ 556 (557)
|.||+|+++++.++ +.++|+|||||.|+++|+.. .+++++.++.+.+.+++|+++|+.
T Consensus 453 s~~k~ms~iv~~~~g~~~~~~KGape~il~~c~~~--------~~~~~~~~~~~~~~~~~~a~~G~R 511 (920)
T 1mhs_A 453 PVSKKVVAVVESPQGERITCVKGAPLFVLKTVEED--------HPIPEEVDQAYKNKVAEFATRGFR 511 (920)
T ss_dssp TTTTEEEEEECCSSSSCEEEEEECHHHHHHHCCCS--------SCCCHHHHHHHHHHHHHHHTSSCC
T ss_pred CCCCeEEEEEEeCCCcEEEEEeCCHHHHHHhcccc--------CCCCHHHHHHHHHHHHHHHhCCCE
Confidence 99999999998654 67899999999999999842 246888999999999999999974
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=100.00 E-value=7.3e-68 Score=594.11 Aligned_cols=441 Identities=27% Similarity=0.379 Sum_probs=355.2
Q ss_pred hhhcCCHHHHHHhhCCCCCCCCCHHHHHHHHhhcCCCCCCCcccchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 008694 3 DAYARSVVEVLDFFGVDPTKGLTDSQVARHVRIYGKNVLPQEKRTAFWKLVLKQFDDLLVKILIAAAVISFFLALINGET 82 (557)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~GL~~~e~~~r~~~~G~N~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (557)
++|..++++++++|+++ .+||+++|+++|+++||+|+++.++ .++|+.++++|++++.++++++++++++++...+
T Consensus 13 ~~~~~~~~~~~~~l~~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis~~l~~~~~-- 88 (885)
T 3b8c_A 13 DLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDG-- 88 (885)
T ss_dssp CCSSSSTTCCTTTSSSC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGGGGSSCCTT--
T ss_pred hhHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 57999999999999998 5899999999999999999999876 5677888899999999998888888776643221
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccceEE
Q 008694 83 GLTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRM 162 (557)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD~il 162 (557)
....|.+++.++++++++.+++.++++++++.++++++..+.+++|+|||++++|++++|+|||||.|++||+|||||+|
T Consensus 89 ~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~l 168 (885)
T 3b8c_A 89 RPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARL 168 (885)
T ss_dssp SCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeceEE
Confidence 22356777778888888999999999999999999999989999999999999999999999999999999999999999
Q ss_pred eeecCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhcccCCC
Q 008694 163 IEMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDE 242 (557)
Q Consensus 163 l~~~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~~~~ 242 (557)
++ +..+.||||+|||||.|+.|.++ |.+|+||.+.+|++.++|++||.+|..|++.+.+.. ..+
T Consensus 169 l~--g~~l~VdES~LTGES~Pv~K~~g-------------~~v~~GT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~-~~~ 232 (885)
T 3b8c_A 169 LE--GDPLKVDQSALTGESLPVTKHPG-------------QEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQ 232 (885)
T ss_dssp CC--SSCBCCCCCSTTCCSSCCCBSSC-------------CCCCSCCCCCSCCCCCBCCSCTTTTTSTTCCCSCCS-CSC
T ss_pred EE--cCcccccccccCCCCcceEecCC-------------CccccCeEEeeeEEEEEEEEcCcccHHHHHHHHHhc-ccc
Confidence 97 33469999999999999999876 589999999999999999999999999999887655 567
Q ss_pred CChhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccCCCCCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 008694 243 VTPLKKKLDEFGTFLAKV-IAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKR 321 (557)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~~~~ 321 (557)
++++++.++++..+++.. ++++++++++.+.. .. ..+ ...+..++++++++||++||+++++++.+++.+
T Consensus 233 ~~~lq~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~---~~~----~~~~~~~v~llv~aiP~aLp~~vti~la~g~~r 303 (885)
T 3b8c_A 233 VGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPI--QR---RKY----RDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 303 (885)
T ss_dssp CSTTTTTTHHHHHHHHHHHHHHHHHHSTTTTTT--TC---SCS----TTHHHHHHHHTTTTCCSSTTTHHHHTTTHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cc---CcH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 899999999998774432 22222222222111 10 112 234667889999999999999999999999999
Q ss_pred HHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEecccccCcceeeeeeeccccCCCCccccCCCccccCC
Q 008694 322 MARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVHSVQQGPIIAEYGVTGTTYAPEGVVFDSSGIQLEFP 401 (557)
Q Consensus 322 ~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (557)
|+++|+++|+++++|+||++|+||||||||||+|+|+|.+.++ +. +.+ .
T Consensus 304 ~ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~~-~~----------------~~~--------~------ 352 (885)
T 3b8c_A 304 LSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLV-EV----------------FCK--------G------ 352 (885)
T ss_dssp HTTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSCCC-CS----------------SCS--------S------
T ss_pred HHhCCeEeCCchHHHHHhCCCEEEECCCCCcccCceEEEEEEE-ec----------------cCC--------C------
Confidence 9999999999999999999999999999999999999964221 00 000 0
Q ss_pred CChHHHHHHHHHhcccccceeeccCCCCcceecCChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhccccccccccccc
Q 008694 402 AQLPCLLHIARCSALCNESVLQYNPDKGNYEKIGEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEF 481 (557)
Q Consensus 402 ~~~~~~~~~~~~~~lC~~~~~~~~~~~~~~~~~~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (557)
... .+++...++|++.. .++|.|.|+++++.+. . ..+..|
T Consensus 353 ~~~---~~ll~~aa~~~~~~------------~~~p~~~Al~~~~~~~---------~----------------~~~~~~ 392 (885)
T 3b8c_A 353 VEK---DQVLLFAAMASRVE------------NQDAIDAAMVGMLADP---------K----------------EARAGI 392 (885)
T ss_dssp TTH---HHHHHHHHHHCCSS------------SCCSHHHHHHHTTCCT---------T----------------CCCCSS
T ss_pred CCH---HHHHHHHHHHhCCC------------CCCchHHHHHHHhhch---------h----------------hHhhcC
Confidence 001 12345557787531 2689999999865320 0 003457
Q ss_pred ceeeeecCCccCceEEEEEeeC-CeEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHHhhhc
Q 008694 482 KKVSILEFSRDRKMMSVLCSHK-QMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSIL 555 (557)
Q Consensus 482 ~il~~~~F~s~rk~mSVvv~~~-~~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gl 555 (557)
++++.+||+|.||||+++++.. ++.++|+|||||.|+++|+. +++.++.+.+.+++|+++|+
T Consensus 393 ~~~~~~pF~s~~k~~sv~~~~~~g~~~~~~KGa~e~il~~c~~------------~~~~~~~~~~~~~~~a~~G~ 455 (885)
T 3b8c_A 393 REVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKA------------SNDLSKKVLSIIDKYAERGL 455 (885)
T ss_dssp CCBCCCCCCTTTCCCCCBBCSSSSCBCBCCCCSGGGTSSSSCC------------CSTTTTTHHHHHHHHTTTTC
T ss_pred ceeecccCCcccceEEEEEEecCCcEEEEEeCCHHHHHHhccC------------chhhHHHHHHHHHHHHhCCC
Confidence 8889999999999999999864 46789999999999999973 12233457788899999996
No 6
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=100.00 E-value=8.4e-47 Score=416.01 Aligned_cols=255 Identities=21% Similarity=0.309 Sum_probs=232.6
Q ss_pred chhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCeEEEeeCCCcCCCcEEEEcCCCccccceEEe
Q 008694 86 AFLE-PSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLR-NGCFSILPAAELVPGDIVEVNVGCKIPADMRMI 163 (557)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r-~g~~~~i~~~~l~~GDIv~l~~g~~vPaD~ill 163 (557)
.|++ +..++++++++.+++.+.++++.+.++++.++.+++++++| ||++++|++++|+|||+|.|++||+|||||+|+
T Consensus 186 ~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl 265 (736)
T 3rfu_A 186 VYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQ 265 (736)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEEC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEE
Confidence 4554 45666888889999999999999999999999999999888 999999999999999999999999999999999
Q ss_pred eecCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhcccCCCC
Q 008694 164 EMLSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEV 243 (557)
Q Consensus 164 ~~~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~~~~~ 243 (557)
+ |.+.||||+|||||.|+.|.++ +.+++||.+.+|++.++|++||.+|.++++.+.+.+++.++
T Consensus 266 ~---G~~~VDES~LTGES~Pv~K~~g-------------d~v~~Gt~~~~G~~~~~v~~~G~~T~l~~I~~lv~~a~~~k 329 (736)
T 3rfu_A 266 E---GRSFVDESMVTGEPIPVAKEAS-------------AKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSR 329 (736)
T ss_dssp S---SCEEEECSSSTTCSSCEEECTT-------------CEECTTCEEESCCCCEEECCCSTTSHHHHHHHHHHHHHSSC
T ss_pred E---CceEeeecccCCccccEEeccC-------------CcCCCceEeccceEEEEEEEechhhHHHHHHHHHHHhhhcC
Confidence 5 8899999999999999999987 48999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 008694 244 TPLKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMA 323 (557)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~~~~~~ 323 (557)
+|+++.+++++.++++++++++++.+++|..+.... .+...+..++++++.+|||+|+++++++...+..+++
T Consensus 330 ~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~~~~-------~~~~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~a 402 (736)
T 3rfu_A 330 APIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQP-------ALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGA 402 (736)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS-------STTHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888887765432211 1234577889999999999999999999999999999
Q ss_pred hcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEE
Q 008694 324 RLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKIC 363 (557)
Q Consensus 324 ~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~ 363 (557)
++|+++|+.+++|.||++|+||||||||||+|+|+|.+++
T Consensus 403 ~~gilvk~~~alE~l~~v~~i~fDKTGTLT~g~~~v~~i~ 442 (736)
T 3rfu_A 403 QSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIV 442 (736)
T ss_dssp HTTEEESCHHHHHHHTSCCEEEECCBTTTBCSSCEEEEEE
T ss_pred hcceeechHHHHHHhcCCCEEEEeCCCCCcCCceEEEEEE
Confidence 9999999999999999999999999999999999999987
No 7
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=7.9e-46 Score=405.49 Aligned_cols=256 Identities=23% Similarity=0.341 Sum_probs=229.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccceEEeee
Q 008694 86 AFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEM 165 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD~ill~~ 165 (557)
+|..+..+++++++..+++.+.++|+++.++++.+..+++++|+|||++++|++++|+|||+|.|++||+|||||+|++
T Consensus 95 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~- 173 (645)
T 3j08_A 95 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE- 173 (645)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEE-
Confidence 4445667777778888888888888888999999999999999999999999999999999999999999999999996
Q ss_pred cCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhcccCCCCCh
Q 008694 166 LSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTP 245 (557)
Q Consensus 166 ~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~~~~~~~ 245 (557)
|.+.||||+|||||.|+.|.++ +.+|+||.+.+|.+.++|++||.+|..|++.+.+.+++.++++
T Consensus 174 --G~~~VdeS~LTGES~Pv~K~~g-------------~~v~~Gt~~~~g~~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~ 238 (645)
T 3j08_A 174 --GESYVDESMISGEPVPVLKSKG-------------DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPP 238 (645)
T ss_dssp --CCEEEECHHHHCCSSCEEECTT-------------CEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHSCCCCCCCS
T ss_pred --CcEEEEcccccCCCCceecCCC-------------CEeeccEEEecCcEEEEEEEcCCccHHHHHHHHHHHhhccCCh
Confidence 8899999999999999999886 5899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhc
Q 008694 246 LKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARL 325 (557)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~~~~~~~~ 325 (557)
+++.+++++.++++++++++++.++.+....... + ...+..++++++.+|||+|+++++++...+..+++++
T Consensus 239 ~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~~----~----~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~ 310 (645)
T 3j08_A 239 IQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAP----L----LFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAEL 310 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCSCS----C----CCTTTTTHHHHHHHSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----H----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999988888888877654321111 1 1124557789999999999999999999999999999
Q ss_pred CceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEe
Q 008694 326 NAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVV 365 (557)
Q Consensus 326 ~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~ 365 (557)
|+++|+++++|.||++|++|||||||||+|+|+|.+++..
T Consensus 311 gilvk~~~~lE~lg~v~~i~fDKTGTLT~~~~~v~~~~~~ 350 (645)
T 3j08_A 311 GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL 350 (645)
T ss_dssp CCCCSSTTHHHHGGGCCEEEEEGGGTSSSSCCEEEEEEES
T ss_pred CeEecCchHHHHhhCCCEEEEcCcccccCCCeEEEEEEeC
Confidence 9999999999999999999999999999999999998753
No 8
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=100.00 E-value=7.6e-46 Score=411.04 Aligned_cols=256 Identities=23% Similarity=0.325 Sum_probs=230.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccceEEeee
Q 008694 86 AFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEM 165 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD~ill~~ 165 (557)
+|..+..+++++++..+++.+.++|+++.++++.+..+++++|+|||++++|++++|+|||+|.|++||+|||||+|++
T Consensus 173 ~~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~- 251 (723)
T 3j09_A 173 FYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE- 251 (723)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEE-
Confidence 3445666777778888888888888888999999999999999999999999999999999999999999999999996
Q ss_pred cCCeeEEecccccCCcceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhcccCCCCCh
Q 008694 166 LSNQLRVDQAILTGESCSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQTEDEVTP 245 (557)
Q Consensus 166 ~~g~~~vdes~ltGes~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~~~~~~~ 245 (557)
|.+.||||+|||||.|+.|.++ +.+|+||.+.+|.+.++|+++|.+|.++++.+.+.+++.++++
T Consensus 252 --G~~~VdeS~LTGES~pv~K~~g-------------~~v~~Gt~~~~g~~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~ 316 (723)
T 3j09_A 252 --GESYVDESMISGEPVPVLKSKG-------------DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPP 316 (723)
T ss_dssp --CCEEEECHHHHCCSSCEEECTT-------------CEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHSSSCCSCCH
T ss_pred --CCeEEecccccCCCcceeecCC-------------CeeccceEEecCcEEEEEEEecCccHHHHHHHHHHHhhccCCh
Confidence 8899999999999999999886 5899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchhhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhc
Q 008694 246 LKKKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPSHGGFLRGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARL 325 (557)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~iP~~l~~~~~~~~~~~~~~~~~~ 325 (557)
+++.+++++.++++++++++++.++.+...... . +...+..++++++.+|||+|+++++++...+..+++++
T Consensus 317 ~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~----~----~~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~ 388 (723)
T 3j09_A 317 IQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA----P----LLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAEL 388 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTC----T----TCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----c----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999998888888877665332111 1 11235678889999999999999999999999999999
Q ss_pred CceeecchhhhhcccccEEEecCCCccCCCccEEEEEEEe
Q 008694 326 NAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVV 365 (557)
Q Consensus 326 ~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~ 365 (557)
|+++|+++++|.||++|+||||||||||+|+|+|.+++..
T Consensus 389 gilvk~~~~lE~lg~v~~i~fDKTGTLT~g~~~v~~~~~~ 428 (723)
T 3j09_A 389 GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL 428 (723)
T ss_dssp TCEESSTTHHHHGGGCCEEEEEHHHHTSCSCCEEEEEEES
T ss_pred CeEEeChHHHHHhhcCCEEEEcCCCccccCceEEEEEEeC
Confidence 9999999999999999999999999999999999998753
No 9
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.93 E-value=5.6e-26 Score=190.35 Aligned_cols=110 Identities=31% Similarity=0.438 Sum_probs=103.2
Q ss_pred HHHHHHhcCCCeEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccceEEeeecCCeeEEecccccCCcceeecccccccc
Q 008694 114 ALEELRAYQADIATVLRNGCFSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGESCSVEKELDSIIA 193 (557)
Q Consensus 114 ~~~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD~ill~~~~g~~~vdes~ltGes~~~~k~~~~~~~ 193 (557)
.+++|.++.+..++|+|+|+++.+++++|+|||+|.+++||+|||||+|++ |.+.||||+||||+.|+.|.++
T Consensus 2 al~~L~~l~p~~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~---g~~~vdeS~LTGEs~pv~k~~g---- 74 (113)
T 2hc8_A 2 AIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVE---GESYVDESMISGEPVPVLKSKG---- 74 (113)
T ss_dssp HHHHHHHHSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEE---CCEEEECHHHHCCSSCEEECTT----
T ss_pred HHHHHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEE---ceEEEEccccCCCCccEEECCC----
Confidence 467788899999999999999999999999999999999999999999996 7799999999999999999986
Q ss_pred cccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhccc
Q 008694 194 TNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQT 239 (557)
Q Consensus 194 ~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~ 239 (557)
+.+|+||.+.+|.+.++|+++|.+|.+|++.+.+..+
T Consensus 75 ---------~~v~aGt~~~~G~~~~~V~~~g~~T~~~~i~~lv~~a 111 (113)
T 2hc8_A 75 ---------DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDA 111 (113)
T ss_dssp ---------CEECTTCEECSSCEEEEEEECGGGSHHHHHHHHHHHH
T ss_pred ---------CEEEeCCEEeeceEEEEEEEecCcCHHHHHHHHHHHh
Confidence 5899999999999999999999999999999887653
No 10
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.92 E-value=4.1e-25 Score=188.47 Aligned_cols=116 Identities=28% Similarity=0.374 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCe------EEEeeCCCcCCCcEEEEcCCCccccceEEeeecCCeeEEecccccCCc
Q 008694 108 ETNAEKALEELRAYQADIATVLRNGC------FSILPAAELVPGDIVEVNVGCKIPADMRMIEMLSNQLRVDQAILTGES 181 (557)
Q Consensus 108 ~~~~~~~~~~l~~~~~~~~~v~r~g~------~~~i~~~~l~~GDIv~l~~g~~vPaD~ill~~~~g~~~vdes~ltGes 181 (557)
++|+++.+++|.++.+..++|+|+|. ++.|++++|+|||+|.|++||+|||||+|++ |.+.||||+||||+
T Consensus 2 ~~ka~~~l~~L~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~---g~~~vdeS~LTGEs 78 (124)
T 2kij_A 2 SFTMSEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIE---GHSMVDESLITGEA 78 (124)
T ss_dssp ----CCHHHHHHHTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECS---CCCEEECTTTTCCS
T ss_pred hHHHHHHHHHHhccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEE---ccEEEEeccccCCC
Confidence 45778889999999999999999764 7899999999999999999999999999995 77899999999999
Q ss_pred ceeecccccccccccccCCCCceEEeeceEeeceEEEEEEEecccchhHHHHHHhccc
Q 008694 182 CSVEKELDSIIATNAVYQDKTNILFSGTVVVAGRARAVVVGVGANTAMGSIRDSMLQT 239 (557)
Q Consensus 182 ~~~~k~~~~~~~~~~~~~~~~n~l~~Gs~v~~g~~~~~V~~tG~~T~~~~~~~~~~~~ 239 (557)
.|+.|.++ +.+|+||.+.+|.+.+.|+++|.+|.+|++.+.+..+
T Consensus 79 ~pv~k~~g-------------~~v~aGt~~~~G~~~~~v~~~g~~T~~~~I~~lv~~a 123 (124)
T 2kij_A 79 MPVAKKPG-------------STVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEA 123 (124)
T ss_dssp SCEECCTT-------------EEECTTCEEESSCCEEEECSCTTTCHHHHHHHHTTTT
T ss_pred ccEEeCCC-------------CEEEcCCEEeeeEEEEEEEEecccCHHHHHHHHHHhh
Confidence 99999986 6999999999999999999999999999999887653
No 11
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli}
Probab=99.67 E-value=6.3e-17 Score=146.22 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=83.2
Q ss_pred CChhHHHHHHHHHHcCCCCCCCCchhhhhhhhhhcccccccccccccceeeeecCCccCceEEEEEeeCC-eEEEEEeCC
Q 008694 435 GEATEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHHWEIEFKKVSILEFSRDRKMMSVLCSHKQ-MCVMFSKGA 513 (557)
Q Consensus 435 ~~p~E~all~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~F~s~rk~mSVvv~~~~-~~~l~~KGa 513 (557)
++|+|.|+++++...+. ...+..|++++.+||||.||||||+++.++ +.++|+|||
T Consensus 33 ~n~~d~Ail~~~~~~~~-----------------------~~~~~~~~~~~eiPFds~rKrmsvv~~~~~g~~~l~~KGA 89 (170)
T 3gwi_A 33 KNLLDTAVLEGTDEESA-----------------------RSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGA 89 (170)
T ss_dssp CCHHHHHHHHTSCHHHH-----------------------HHHHHHSEEEEEECCCTTTCEEEEEEESSSSEEEEEEEEC
T ss_pred CChHHHHHHHHHHhcCh-----------------------hhhhhcCeEEeeEecCcccCcEEEEEEeCCCCEEEEEcCC
Confidence 69999999987633210 011467899999999999999999999755 789999999
Q ss_pred cHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHHhhhcc
Q 008694 514 PESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSILY 556 (557)
Q Consensus 514 ~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~ 556 (557)
||.|+++|+.+.. +|...|+|++.|+.+.+.+++|+++||-
T Consensus 90 pE~IL~~C~~~~~--~g~~~~l~~~~~~~i~~~~~~la~~GlR 130 (170)
T 3gwi_A 90 LQEILNVCSQVRH--NGEIVPLDDIMLRKIKRVTDTLNRQGLR 130 (170)
T ss_dssp HHHHHTTEEEEEE--TTEEEECCHHHHHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHhHHHhc--CCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999875 7999999999999999999999999983
No 12
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=97.98 E-value=7.3e-09 Score=100.67 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEE
Q 008694 318 GTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKIC 363 (557)
Q Consensus 318 ~~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~ 363 (557)
++.+++++|+++|+.+++|.|+++++||||||||||+|+|.+.++.
T Consensus 5 a~~~~~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~ 50 (263)
T 2yj3_A 5 LYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI 50 (263)
Confidence 4567889999999999999999999999999999999999999874
No 13
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=98.14 E-value=4.4e-06 Score=81.95 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=40.5
Q ss_pred HHHHHHHhcCceeecchhhhhcccccEEEecCCCccCCCccEEEEEEE
Q 008694 317 LGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICV 364 (557)
Q Consensus 317 ~~~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~ 364 (557)
-+.++++++|+++|+++++|.+++++.||||||||||.+.+.+.+++.
T Consensus 8 ~~~~~~~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~ 55 (287)
T 3a1c_A 8 HGSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVP 55 (287)
T ss_dssp ------CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEE
T ss_pred hhHHHHHHCCEEEeCcHHHHHhhcCCEEEEeCCCCCcCCCEEEEEEEe
Confidence 456789999999999999999999999999999999999999998765
No 14
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=96.84 E-value=0.00043 Score=66.75 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=31.6
Q ss_pred eecchhhhhcccccEEEecCCCccCCCccEEEEEEEec
Q 008694 329 VRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKICVVH 366 (557)
Q Consensus 329 ~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~v~~~~~~~ 366 (557)
+|+++++|.+++++.|+||++||||.|+|+|.++...+
T Consensus 1 ~k~~~~~e~~~~ik~i~FD~DGTL~d~~~~v~~~~~~~ 38 (280)
T 3skx_A 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFN 38 (280)
T ss_dssp ----CHHHHGGGCCEEEEECCCCCEEEEEEEEEEEESS
T ss_pred CCChHHHHHhcCCCEEEEeCCCcCCCCcEEEEEEEecC
Confidence 57899999999999999999999999999999987543
No 15
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=91.41 E-value=1.2 Score=38.58 Aligned_cols=81 Identities=12% Similarity=0.272 Sum_probs=51.4
Q ss_pred CChhHHHHHHHHHHc-CCCCCCCCchhhhhhhhhhcccccccccccccc-eeeeecCCccCceEEEEEeeCCeEEEEEeC
Q 008694 435 GEATEVALRVLAEKV-GLPGFDSMPSALNMLSKHERASYCNHHWEIEFK-KVSILEFSRDRKMMSVLCSHKQMCVMFSKG 512 (557)
Q Consensus 435 ~~p~E~all~~a~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-il~~~~F~s~rk~mSVvv~~~~~~~l~~KG 512 (557)
..|.-.|++++|++. |+.... .. + .....||++..++..|.+ ++ .-+.+|
T Consensus 50 eHPla~AIv~~A~~~~~l~~~~-----------------------~~-~~~~~~~~F~a~~G~~Gv~v--~G--~~v~vG 101 (156)
T 1svj_A 50 ETPEGRSIVILAKQRFNLRERD-----------------------VQ-SLHATFVPFTAQSRMSGINI--DN--RMIRKG 101 (156)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCC-----------------------HH-HHTCEEEEEETTTTEEEEEE--TT--EEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCccc-----------------------cc-ccccceeeccccCCCCeEEE--CC--EEEEEe
Confidence 579999999999876 653210 00 0 122458999888777755 33 346899
Q ss_pred CcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHHhhh
Q 008694 513 APESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDNSI 554 (557)
Q Consensus 513 a~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 554 (557)
+++.|...+... |.. +++ .+.+.+++++++|
T Consensus 102 n~~~i~~l~~~~-----gi~--~~~----~~~~~~~~la~~G 132 (156)
T 1svj_A 102 SVDAIRRHVEAN-----GGH--FPT----DVDQKVDQVARQG 132 (156)
T ss_dssp EHHHHHHHHHHH-----TCC--CCH----HHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHc-----CCC--CcH----HHHHHHHHHHhCC
Confidence 999888877642 111 222 2556667777776
No 16
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=90.42 E-value=0.061 Score=52.35 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=28.3
Q ss_pred HhcCceeecchhhhhc---------ccccEEEecCCCccCCCccEEEE
Q 008694 323 ARLNAIVRSLPSVETL---------GCTTVICSDKTGTLTTNMMSVAK 361 (557)
Q Consensus 323 ~~~~i~~~~~~~~e~L---------g~v~~i~~DKTGTLT~n~m~v~~ 361 (557)
.+.++++|++..+|++ .++. ++||||||||+.......
T Consensus 17 ~k~~v~ikd~~~~e~~i~~~~kgg~~kL~-VV~DfdgTLT~~~~~g~~ 63 (297)
T 4fe3_A 17 QKSSVRIKNPTRVEEIICGLIKGGAAKLQ-IITDFNMTLSRFSYNGKR 63 (297)
T ss_dssp TSTTEECSCHHHHHHHHHHHHHHHHHHEE-EEECCTTTTBCSEETTEE
T ss_pred hcCCeEEcChHHHHHHHHHHHhCcchhEE-EEEcCCCCceeeccCCeE
Confidence 6789999999998873 2333 678999999987544333
No 17
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=67.25 E-value=57 Score=37.22 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CeE-EE----EeCCeEEEeeCCCcCCCcEEEEcCCC
Q 008694 89 EPSVILLILAANAAVGVITETNAEKALEELRAYQA-----DIA-TV----LRNGCFSILPAAELVPGDIVEVNVGC 154 (557)
Q Consensus 89 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~-----~~~-~v----~r~g~~~~i~~~~l~~GDIv~l~~g~ 154 (557)
..++++++..+..++.-....++-+.++++..... .+. .+ +.-|....+...|.+|-|.+.++.++
T Consensus 145 ~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~ 220 (1034)
T 3ixz_A 145 ALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG 220 (1034)
T ss_pred hhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCC
Confidence 33444444445556777777788888888753222 111 11 24688899999999999999988654
No 18
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=66.31 E-value=5.1 Score=35.62 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=29.4
Q ss_pred eEEEEeCCeEEEeeCCCcCCCcEEEEcCCCccccc
Q 008694 125 IATVLRNGCFSILPAAELVPGDIVEVNVGCKIPAD 159 (557)
Q Consensus 125 ~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPaD 159 (557)
...+.++|+.+.+++++|++||.|.+..|..++.|
T Consensus 104 p~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~~~ 138 (186)
T 2jmz_A 104 PVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLD 138 (186)
T ss_dssp EEEEEETTEEEEEEGGGCCTTSEEEEECSSSEEEE
T ss_pred EEEEeCCCeEEEEEhhcCCCCCEEEecccCCccce
Confidence 45778889999999999999999999877666655
No 19
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=56.17 E-value=13 Score=32.87 Aligned_cols=34 Identities=29% Similarity=0.160 Sum_probs=28.4
Q ss_pred eEEEEeCCeEEEeeCCCcCCCcEEEEcCCCcccc
Q 008694 125 IATVLRNGCFSILPAAELVPGDIVEVNVGCKIPA 158 (557)
Q Consensus 125 ~~~v~r~g~~~~i~~~~l~~GDIv~l~~g~~vPa 158 (557)
...+.++|..+.+.+++|.+||.|.+..++..|-
T Consensus 94 ~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~~~ 127 (185)
T 2lcj_A 94 PVLVYENGRFIEKRAFEVKEGDKVLVSELELVEQ 127 (185)
T ss_dssp EEEEEETTEEEEEEGGGCCTTCEEEECCCCCSCC
T ss_pred EEEEecCCeEEEEEHHHCCCCCEEEEcccccccc
Confidence 3567788999999999999999999988775553
No 20
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=37.42 E-value=68 Score=26.87 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=22.7
Q ss_pred EEEEeC--CeEEEeeCCCcCCCcEEEEcCC
Q 008694 126 ATVLRN--GCFSILPAAELVPGDIVEVNVG 153 (557)
Q Consensus 126 ~~v~r~--g~~~~i~~~~l~~GDIv~l~~g 153 (557)
+++... +....+.+++|++||.|.+..|
T Consensus 74 i~v~~~~~~~~~~v~A~~l~~GD~v~~~~~ 103 (145)
T 1at0_A 74 VSVWQPESQKLTFVFADRIEEKNQVLVRDV 103 (145)
T ss_dssp EEEEETTTTEEEEEEGGGCCTTCEEEEECT
T ss_pred EEEecCCCCcEEEEEHHHCcCCCEEEEecC
Confidence 455555 4578899999999999998887
No 21
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=35.76 E-value=1.5e+02 Score=33.50 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.0
Q ss_pred eCCeEEEeeCCCcCCCcEEEEc
Q 008694 130 RNGCFSILPAAELVPGDIVEVN 151 (557)
Q Consensus 130 r~g~~~~i~~~~l~~GDIv~l~ 151 (557)
.-|....+...|.+|-|.+.++
T Consensus 147 v~GDiV~l~~Gd~IPaD~~ll~ 168 (995)
T 3ar4_A 147 VPGDIVEVAVGDKVPADIRILS 168 (995)
T ss_dssp CTTCEEEEETTCBCCSEEEEEE
T ss_pred CCCCEEEECCCCcccccEEEEE
Confidence 4688999999999999999953
No 22
>2kmv_A Copper-transporting ATPase 1; menkes, nucleotide binding protein, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} PDB: 2kmx_A*
Probab=35.39 E-value=18 Score=31.93 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=13.6
Q ss_pred CccCCCccEEEEEEE
Q 008694 350 GTLTTNMMSVAKICV 364 (557)
Q Consensus 350 GTLT~n~m~v~~~~~ 364 (557)
||||+|++.|.++..
T Consensus 1 GTLT~G~p~V~~v~~ 15 (185)
T 2kmv_A 1 SFTMHGTPVVNQVKV 15 (185)
T ss_dssp CCCCSCCCEEEEEEE
T ss_pred CCCcCCcEEEEEEEe
Confidence 899999999999864
No 23
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=28.74 E-value=24 Score=29.37 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.2
Q ss_pred EEeeCCCcCCCcEEEEcCCCc
Q 008694 135 SILPAAELVPGDIVEVNVGCK 155 (557)
Q Consensus 135 ~~i~~~~l~~GDIv~l~~g~~ 155 (557)
..|+.++++|||+|..+.|..
T Consensus 61 ~~V~~~~l~pGDLvFf~~~~~ 81 (135)
T 2k1g_A 61 KSVSRSNLRTGDLVLFRAGST 81 (135)
T ss_dssp EEECGGGCCTTEEEEEEETTT
T ss_pred cEecHHHccCCcEEEECCCCC
Confidence 457889999999999987643
No 24
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=28.42 E-value=45 Score=29.64 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=40.6
Q ss_pred ceEEEEEeeCCeEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHHh
Q 008694 494 KMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDN 552 (557)
Q Consensus 494 k~mSVvv~~~~~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 552 (557)
+--.|+|...+...+--+|.++.|-.+|.++.. .....-++.+|+++++++-+++-
T Consensus 141 ~a~~V~vtkd~TtIv~G~G~~~~I~~Rv~qIr~---qie~t~S~ydkEKLqERLAKLsG 196 (201)
T 3osx_A 141 QAKRVVINKDTTTIIDGVGEEGAIAARVTQIRQ---QIEESTSDYDREKLQERVAKLAG 196 (201)
T ss_dssp EEEEEEECSSCEEEEEECCCHHHHHHHHHHHHH---HHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCCceEEecCCCCHHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHcC
Confidence 334456655556667678999999999998752 22234478999999999988863
No 25
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=26.81 E-value=33 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=25.3
Q ss_pred ChhhhcCCHHHHHHhhCCCCCCCCCH----HHHHHHHhhc
Q 008694 1 MEDAYARSVVEVLDFFGVDPTKGLTD----SQVARHVRIY 36 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~GL~~----~e~~~r~~~~ 36 (557)
|.+++.+.+.+|-+.|.. +||+. ++.-+|+..+
T Consensus 2 m~~~~kltV~eLK~~Lk~---RGL~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 2 SADYSSLTVVQLKDLLTK---RNLSVGGLKNELVQRLIKD 38 (51)
T ss_dssp CCSGGGCCHHHHHHHHHH---TTCCCCSSHHHHHHHHHHH
T ss_pred cchHHHCcHHHHHHHHHH---cCCCCCCcHHHHHHHHHHH
Confidence 788999999999999874 46643 6777777665
No 26
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=26.72 E-value=54 Score=28.95 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=40.7
Q ss_pred ceEEEEEeeCCeEEEEEeCCcHHHHhhcccccccCCCeeecCCHHHHHHHHHHHHHHHh
Q 008694 494 KMMSVLCSHKQMCVMFSKGAPESVLSRCTNILCNDNGFIVPMTANIRAELESRLNRLDN 552 (557)
Q Consensus 494 k~mSVvv~~~~~~~l~~KGa~e~il~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 552 (557)
+--.|+|...+...+--+|.++.|-.+|.++.. .....-++.+|+++++++-+++-
T Consensus 134 ~a~~v~vtkd~T~iv~G~g~~~~I~~Rv~qIr~---~ie~t~s~ydkEKLqERlAkLsG 189 (194)
T 3m6c_A 134 SARRVVVSKDDTVIVDGGGTAEAVANRAKHLRA---EIDKSDSDWDREKLGERLAKLAG 189 (194)
T ss_dssp EEEEEEECSSCEEEEEECCCHHHHHHHHHHHHH---HHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCCceEEecCCCCHHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHcC
Confidence 334556655556667778999999999998752 22234478999999999988863
No 27
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=23.30 E-value=1.4e+02 Score=21.93 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=23.7
Q ss_pred CeEEEEeCCeEEEeeC---CCcCCCcEEEEcCCC
Q 008694 124 DIATVLRNGCFSILPA---AELVPGDIVEVNVGC 154 (557)
Q Consensus 124 ~~~~v~r~g~~~~i~~---~~l~~GDIv~l~~g~ 154 (557)
..++|-.+|..+++.. .+..|||-|.+..|-
T Consensus 15 ~~A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~Gf 48 (75)
T 2z1c_A 15 PVAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGF 48 (75)
T ss_dssp TEEEEEETTEEEEEECTTSTTCCTTCEEEEETTE
T ss_pred CEEEEEcCCEEEEEEEEEeCCCCCCCEEEEecch
Confidence 3466777888887774 567789999999884
No 28
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=23.08 E-value=29 Score=29.99 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=18.0
Q ss_pred hhcccccEEEecCCCccCCCccE
Q 008694 336 ETLGCTTVICSDKTGTLTTNMMS 358 (557)
Q Consensus 336 e~Lg~v~~i~~DKTGTLT~n~m~ 358 (557)
|.+..+..|++|--||||.+...
T Consensus 4 ~~~~~ikliv~D~DGtL~d~~~~ 26 (168)
T 3ewi_A 4 EKLKEIKLLVCNIDGCLTNGHIY 26 (168)
T ss_dssp ---CCCCEEEEECCCCCSCSCCB
T ss_pred hhHhcCcEEEEeCccceECCcEE
Confidence 56778999999999999998764
No 29
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=22.94 E-value=81 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=13.9
Q ss_pred eCCCcCCCcEEEEcCCCccc
Q 008694 138 PAAELVPGDIVEVNVGCKIP 157 (557)
Q Consensus 138 ~~~~l~~GDIv~l~~g~~vP 157 (557)
.+.|+++||+|..-.=..+|
T Consensus 78 ~~~dik~GD~Ie~ye~~ev~ 97 (99)
T 1d1n_A 78 NFNDIKEGDVIEAYVMQEVA 97 (99)
T ss_dssp TCSSCSSCSEEEEECCSCCC
T ss_pred CcCCCCCCCEEEEEEEEEEc
Confidence 46788899988765544444
No 30
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=21.01 E-value=48 Score=28.89 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.2
Q ss_pred hhhhhcccccEEEecCCCccCCCcc
Q 008694 333 PSVETLGCTTVICSDKTGTLTTNMM 357 (557)
Q Consensus 333 ~~~e~Lg~v~~i~~DKTGTLT~n~m 357 (557)
...+.+..++.|+||--|||+.+..
T Consensus 11 ~~~~~~~~ik~vifD~DGTL~d~~~ 35 (189)
T 3mn1_A 11 DLMQRGKAIKLAVFDVDGVLTDGRL 35 (189)
T ss_dssp HHHHHHHTCCEEEECSTTTTSCSEE
T ss_pred HHHHHHHhCCEEEEcCCCCcCCccE
Confidence 3456667899999999999998843
No 31
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=20.57 E-value=51 Score=28.33 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=19.2
Q ss_pred hhhcccccEEEecCCCccCCCccE
Q 008694 335 VETLGCTTVICSDKTGTLTTNMMS 358 (557)
Q Consensus 335 ~e~Lg~v~~i~~DKTGTLT~n~m~ 358 (557)
++.+..++.++||--|||+.+...
T Consensus 6 ~~~~~~~k~vifD~DGTL~d~~~~ 29 (176)
T 3mmz_A 6 LPTAEDIDAVVLDFDGTQTDDRVL 29 (176)
T ss_dssp CCCGGGCSEEEECCTTTTSCSCCE
T ss_pred hhhHhcCCEEEEeCCCCcCcCCEe
Confidence 355667899999999999996553
Done!