BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008695
         (557 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 35.0 bits (79), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 327 PLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQV 373
           P P EL+ +F L  PV   +  +V  F ++      +G+  +AAHQV
Sbjct: 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQV 278


>pdb|3AT5|B Chain B, Side-Necked Turtle (Pleurodira, Chelonia, Reptilia)
           Hemoglobin: Cdna- Derived Primary Structures And X-Ray
           Crystal Structures Of Hb A
 pdb|3AT6|B Chain B, Side-Necked Turtle (Pleurodira, Chelonia, Reptilia)
           Hemoglobin: Cdna- Derived Primary Structures And X-Ray
           Crystal Structures Of Hb A
          Length = 146

 Score = 30.0 bits (66), Expect = 3.6,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 518 VLVGFQWT-RFFLAFQRLLSPTGILYSENVSKH 549
           +L+ + WT RFF +F  L SP+ IL++  V  H
Sbjct: 31  LLIVYPWTQRFFSSFGNLSSPSAILHNAKVHAH 63


>pdb|2QMB|B Chain B, Structure Determination Of Haemoglobin From
           Turkey(meleagris Gallopavo) At 2.8 Angstrom Resolution
 pdb|2QMB|D Chain D, Structure Determination Of Haemoglobin From
           Turkey(meleagris Gallopavo) At 2.8 Angstrom Resolution
 pdb|3K8B|B Chain B, Crystal Structure Of Turkey (Meleagiris
           Gallopova)hemoglobin At 2.3 Angstrom
 pdb|3K8B|D Chain D, Crystal Structure Of Turkey (Meleagiris
           Gallopova)hemoglobin At 2.3 Angstrom
          Length = 146

 Score = 29.3 bits (64), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 518 VLVGFQWT-RFFLAFQRLLSPTGILYSENVSKH 549
           +L+ + WT RFF +F  L SPT IL +  V  H
Sbjct: 31  LLIVYPWTQRFFASFGNLSSPTAILGNPMVRAH 63


>pdb|3EOK|B Chain B, Crystal Structure Determination Of Duck (Anas
           Platyrhynchos) Hemoglobin At 2.1 Angstrom Resolution
          Length = 146

 Score = 29.3 bits (64), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 518 VLVGFQWT-RFFLAFQRLLSPTGILYSENVSKH 549
           +L+ + WT RFF +F  L SPT IL +  V  H
Sbjct: 31  LLIVYPWTQRFFASFGNLSSPTAILGNPMVRAH 63


>pdb|1HBR|B Chain B, R-State Form Of Chicken Hemoglobin D
 pdb|1HBR|D Chain D, R-State Form Of Chicken Hemoglobin D
          Length = 146

 Score = 29.3 bits (64), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 518 VLVGFQWT-RFFLAFQRLLSPTGILYSENVSKH 549
           +L+ + WT RFF +F  L SPT IL +  V  H
Sbjct: 31  LLIVYPWTQRFFASFGNLSSPTAILGNPMVRAH 63


>pdb|3MJP|B Chain B, Crystal Structure Determination Of Japanese Quail
           (Coturnix Coturnix Japonica) Hemoglobin At 2.76 Angstrom
           Resolution
 pdb|3MJP|D Chain D, Crystal Structure Determination Of Japanese Quail
           (Coturnix Coturnix Japonica) Hemoglobin At 2.76 Angstrom
           Resolution
          Length = 146

 Score = 29.3 bits (64), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 518 VLVGFQWT-RFFLAFQRLLSPTGILYSENVSKH 549
           +L+ + WT RFF +F  L SPT IL +  V  H
Sbjct: 31  LLIVYPWTQRFFASFGNLSSPTAILGNPMVRAH 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,084,414
Number of Sequences: 62578
Number of extensions: 430376
Number of successful extensions: 1295
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1294
Number of HSP's gapped (non-prelim): 8
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)