Query 008695
Match_columns 557
No_of_seqs 300 out of 2475
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 15:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.2E-55 9.1E-60 454.3 53.3 425 108-537 12-443 (455)
2 PRK10189 MATE family multidrug 100.0 6.4E-52 1.4E-56 434.5 56.5 440 111-553 27-478 (478)
3 PRK00187 multidrug efflux prot 100.0 1.7E-49 3.6E-54 416.3 53.7 422 109-536 6-443 (464)
4 PRK09575 vmrA multidrug efflux 100.0 1.5E-48 3.2E-53 408.5 54.5 418 113-536 12-435 (453)
5 PRK10367 DNA-damage-inducible 100.0 8.8E-49 1.9E-53 407.1 51.9 418 109-537 5-431 (441)
6 PRK01766 multidrug efflux prot 100.0 1.3E-47 2.8E-52 403.1 53.7 425 107-536 6-441 (456)
7 TIGR01695 mviN integral membra 100.0 4.1E-35 8.9E-40 312.7 52.5 417 115-539 2-430 (502)
8 KOG1347 Uncharacterized membra 100.0 4.8E-38 1E-42 323.7 27.4 420 109-534 24-449 (473)
9 TIGR00797 matE putative efflux 100.0 1.9E-34 4.2E-39 292.1 42.3 336 121-461 1-341 (342)
10 TIGR02900 spore_V_B stage V sp 100.0 8.7E-33 1.9E-37 293.8 48.0 410 116-539 2-436 (488)
11 PRK15099 O-antigen translocase 100.0 1.5E-30 3.2E-35 270.5 44.0 401 115-534 3-409 (416)
12 PF03023 MVIN: MviN-like prote 100.0 8.9E-29 1.9E-33 257.5 49.2 393 143-542 5-408 (451)
13 COG0728 MviN Uncharacterized m 100.0 8.4E-28 1.8E-32 245.6 50.9 426 113-542 7-442 (518)
14 PRK10459 colanic acid exporter 99.9 5E-23 1.1E-27 218.9 45.1 396 113-536 5-404 (492)
15 COG2244 RfbX Membrane protein 99.9 6.4E-20 1.4E-24 194.6 42.0 387 112-521 5-396 (480)
16 PRK00187 multidrug efflux prot 99.9 8.4E-21 1.8E-25 199.3 25.8 210 108-317 231-444 (464)
17 PRK01766 multidrug efflux prot 99.9 1.3E-19 2.7E-24 190.8 26.0 208 108-317 234-442 (456)
18 PRK10189 MATE family multidrug 99.8 4.1E-19 8.9E-24 186.7 28.3 205 329-536 25-236 (478)
19 COG0534 NorM Na+-driven multid 99.8 6.4E-19 1.4E-23 183.6 26.3 208 328-538 12-222 (455)
20 PRK10367 DNA-damage-inducible 99.8 2.5E-18 5.4E-23 179.0 26.5 206 328-536 4-211 (441)
21 PRK09575 vmrA multidrug efflux 99.8 3.2E-18 6.8E-23 179.5 26.3 207 328-537 7-215 (453)
22 TIGR01695 mviN integral membra 99.8 2.7E-17 5.9E-22 175.5 33.9 235 109-350 219-456 (502)
23 PF03023 MVIN: MviN-like prote 99.8 1.2E-15 2.7E-20 159.1 32.6 207 110-318 195-404 (451)
24 PF01554 MatE: MatE; InterPro 99.7 5.1E-18 1.1E-22 152.2 7.1 161 121-283 1-162 (162)
25 TIGR02900 spore_V_B stage V sp 99.7 5.3E-15 1.1E-19 157.4 30.5 203 109-317 221-434 (488)
26 TIGR00797 matE putative efflux 99.7 2.5E-15 5.4E-20 152.1 25.2 193 341-536 1-196 (342)
27 COG0728 MviN Uncharacterized m 99.7 9.8E-14 2.1E-18 142.7 35.7 241 110-356 229-472 (518)
28 PF01943 Polysacc_synt: Polysa 99.7 2.1E-13 4.6E-18 133.1 32.8 267 116-398 2-271 (273)
29 PF01554 MatE: MatE; InterPro 99.6 2E-16 4.3E-21 141.9 6.0 161 341-504 1-162 (162)
30 PRK10459 colanic acid exporter 99.6 8E-13 1.7E-17 140.7 30.1 201 109-317 203-405 (492)
31 PRK15099 O-antigen translocase 99.6 3.1E-13 6.7E-18 140.6 25.5 198 109-315 211-410 (416)
32 COG2244 RfbX Membrane protein 99.6 1.5E-12 3.3E-17 138.2 30.4 187 109-302 209-396 (480)
33 PF13440 Polysacc_synt_3: Poly 99.5 1.1E-10 2.4E-15 112.4 31.9 244 132-398 3-250 (251)
34 KOG2864 Nuclear division RFT1 99.0 1.4E-06 2.9E-11 86.2 30.7 411 113-541 8-453 (530)
35 PF07260 ANKH: Progressive ank 99.0 1.4E-06 3E-11 82.6 28.5 268 111-385 9-293 (345)
36 PF04506 Rft-1: Rft protein; 99.0 3.7E-07 8E-12 96.4 27.1 418 117-536 5-469 (549)
37 KOG1347 Uncharacterized membra 98.9 5.6E-08 1.2E-12 101.2 19.4 202 329-534 24-227 (473)
38 PF14667 Polysacc_synt_C: Poly 98.7 2.2E-06 4.7E-11 75.1 18.5 79 237-317 2-80 (146)
39 PF04506 Rft-1: Rft protein; 98.1 0.00037 8.1E-09 73.9 21.1 202 113-317 253-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.1 0.0016 3.5E-08 63.0 23.4 188 337-538 3-192 (273)
41 PF14667 Polysacc_synt_C: Poly 97.8 0.00015 3.3E-09 63.2 9.6 83 458-541 2-84 (146)
42 PF13440 Polysacc_synt_3: Poly 97.8 0.0095 2.1E-07 56.9 23.0 162 358-536 10-172 (251)
43 PF07260 ANKH: Progressive ank 97.8 0.0091 2E-07 57.3 21.6 169 327-505 5-179 (345)
44 COG4267 Predicted membrane pro 97.7 0.073 1.6E-06 52.2 33.1 332 165-528 77-437 (467)
45 KOG2864 Nuclear division RFT1 97.4 0.05 1.1E-06 54.7 22.2 200 113-316 239-448 (530)
46 COG4267 Predicted membrane pro 59.5 2E+02 0.0044 29.1 20.8 128 385-530 77-204 (467)
47 PF05975 EcsB: Bacterial ABC t 57.6 2.3E+02 0.0049 29.0 16.1 38 184-221 89-126 (386)
48 PF04505 Dispanin: Interferon- 28.6 2.5E+02 0.0053 21.5 6.1 33 398-433 45-77 (82)
49 PF04505 Dispanin: Interferon- 26.1 3E+02 0.0065 21.0 6.4 38 168-205 36-73 (82)
50 PF05975 EcsB: Bacterial ABC t 22.4 8.4E+02 0.018 24.9 14.6 35 407-442 90-124 (386)
51 COG3135 BenE Uncharacterized p 21.4 6.5E+02 0.014 25.4 8.8 21 510-530 375-395 (402)
52 PF03904 DUF334: Domain of unk 21.1 4E+02 0.0086 24.8 6.9 40 182-222 140-179 (230)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.2e-55 Score=454.34 Aligned_cols=425 Identities=23% Similarity=0.256 Sum_probs=400.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 008695 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 108 ~~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
..++.|+++++++|++++++.+.+++++|+.++||+|++++|+.+++.++..+...+..+++.|.++++||++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 33456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHH
Q 008695 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 267 (557)
+++..++++.++++++++..++.+++.++++.+++. ++|+.+.+..|+++..++.|+..+..++.+++|+.|+++.++
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 999999999999999999999999999999999976 566999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHhc-cC-cchHHHHHHHHHHHHHHHHHHHHHHhhccc--cc--ccccCCCHHHHHHHHHHhHH
Q 008695 268 KALVVASAVNGIGDIVLCRF-LG-YGIAGAAWATMASQVIAAYMMIINLNQKGY--NA--FAISIPLPSELLAIFELAAP 341 (557)
Q Consensus 268 ~~~~~~~~~~i~l~~~li~~-~~-~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~il~~~~p 341 (557)
+.+++++++|+++|++|+++ ++ +|+.|+++||++++++..++..+++.+++. .. .+..+++++.+++++++|+|
T Consensus 170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p 249 (455)
T COG0534 170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLP 249 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhccc
Confidence 99999999999999999987 57 999999999999999999999888876652 12 33458899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHH
Q 008695 342 VFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVII 421 (557)
Q Consensus 342 ~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~ 421 (557)
.++++..+...+.+.+.+.+++|++++|+|+++.++.++.++++.|++++.++++ ++++|+ ||+++ +++..+.++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lv-G~~~Ga-~~~~~-a~~~~~~~~~~ 326 (455)
T COG0534 250 IFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILV-GQNLGA-GNYKR-ARRAARLALKL 326 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC-CCHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 569999 78999 99999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH-HHHHHH
Q 008695 422 GAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGC-FSLGAL 500 (557)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~i~ 500 (557)
+..++...+++++++++++.++|++|+++.+.+.+++++..+..++++.+.+..+.+||.||++.++..++.. |.+.+|
T Consensus 327 ~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp 406 (455)
T COG0534 327 SLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLP 406 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988875 677889
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 008695 501 ALLLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLSP 537 (557)
Q Consensus 501 ~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~ 537 (557)
+.+++....+|..|+|+++..++.++.++..++++++
T Consensus 407 ~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 407 LAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888853229999999999999999999999998874
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=6.4e-52 Score=434.53 Aligned_cols=440 Identities=17% Similarity=0.182 Sum_probs=397.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 008695 111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQH 190 (557)
Q Consensus 111 ~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~ 190 (557)
..|+++++++|.++++++..+++++|+.++|++|++++|+++++.++..+...+..|++.+.+++++|++|++|+|++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~ 106 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARA 106 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 37999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 008695 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKAL 270 (557)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 270 (557)
..++++.++++++++.+++.+.+.++++.++.++.|+|+.+.+..|+++..++.|+..+..++.+++||.|+++.+++.+
T Consensus 107 ~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~ 186 (478)
T PRK10189 107 AARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLIN 186 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHH
Confidence 99999999999999999999899999999985334789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHhc----cCcchHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccccc----cCCCHHHHHHHHHHhH
Q 008695 271 VVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQK-G-YNAFAI----SIPLPSELLAIFELAA 340 (557)
Q Consensus 271 ~~~~~~~i~l~~~li~~----~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~il~~~~ 340 (557)
++..++|+++++++++. +++|+.|+++|+.+++++..++..+++.++ + ..+.++ .+++++.+++++++|+
T Consensus 187 ~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~ 266 (478)
T PRK10189 187 GGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGI 266 (478)
T ss_pred HHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhc
Confidence 99999999999999974 489999999999999999988776665432 1 112221 2357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHH
Q 008695 341 PVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVI 420 (557)
Q Consensus 341 p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 420 (557)
|.+++.......+.+.+.+++++|++++|+|+++.++..+.+++..|++++.++++ ++++|+ +|+++ +|+..+.+++
T Consensus 267 P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lv-g~~~Ga-~~~~~-a~~~~~~~~~ 343 (478)
T PRK10189 267 PASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIIT-GTRLGK-GQIAQ-AERQLRHVFW 343 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC-CCHHH-HHHHHHHHHH
Confidence 99999999999999989899999999999999999999999999999999999999 569999 78999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH-HHHHH
Q 008695 421 IGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGC-FSLGA 499 (557)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~i 499 (557)
++.++++..++++.++++++.++|++|+++.+.+..++++.++..++++++.+..+.+||.||++.++..++.+ |++.+
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765 67888
Q ss_pred HHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHH
Q 008695 500 LALLLVS-GKGYGLPGCWYVLVGFQWTRFFLAFQRLLSPTGILYSENVSKHQLEK 553 (557)
Q Consensus 500 ~~~~~l~-~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 553 (557)
|+.+++. +.++|+.|+|++..+++.++.++.++|+++.+-....++.+.+++||
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~~~~~~~~~~~ 478 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKYPRPEPQKCEK 478 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCCCCCcccccC
Confidence 9988874 45799999999999999999999999887643222234454555554
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.7e-49 Score=416.25 Aligned_cols=422 Identities=18% Similarity=0.168 Sum_probs=384.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~~ 188 (557)
++++|+++++++|.+++++++.+.+++|+.++||+|++++|+++++.++..+...+..|++.+.++.++|++|++|++++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~ 85 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGA 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 34569999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHH
Q 008695 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 268 (557)
++..++++.+.++++++..++.+ +.++++.+++. |+|+.+.+..|+++..++.|+..+...+++++|+.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~--~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 86 TRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQ--APQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999998877764 67999999965 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHhc----cCcchHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc----cccCCCHHHHHHHHHHh
Q 008695 269 ALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAF----AISIPLPSELLAIFELA 339 (557)
Q Consensus 269 ~~~~~~~~~i~l~~~li~~----~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~il~~~ 339 (557)
.++++.++|+++|++|+++ |++|+.|+++|+.+++.+..+.+.+++++++. .+. ++.+++++.+|+++++|
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 9999999999999999974 36899999999999998887766666554321 111 22356789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHH
Q 008695 340 APVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLV 419 (557)
Q Consensus 340 ~p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~ 419 (557)
+|.+++++.+...+.+++.+++++|++++|+++++.++..+.+.+..|++.+.+++++ +++|+ +|+++ +++..+.++
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvg-q~~Ga-~~~~~-~~~~~~~~l 319 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVG-QHYGA-GRLLE-ARRAGRVGI 319 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcC-CCHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 59999 68999 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCC--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 008695 420 IIGAILGVLLAIVGTSVPWLFPNIFTP--DK---VIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGC 494 (557)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 494 (557)
.++.+++++.+++++++++++.++|++ |+ ++.+.+..++++..+..++++++.++.+++||.||++.+++.++.+
T Consensus 320 ~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~ 399 (464)
T PRK00187 320 GFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLAC 399 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHH
Confidence 999999999999999999999999974 44 6788889999999999999999999999999999999999999886
Q ss_pred -HHHHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 495 -FSLGALALLLVS-GKGYGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 495 -~~v~i~~~~~l~-~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
|++++|+.|++. .+++|+.|+|++..+++++..++...+++.
T Consensus 400 ~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 400 YWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999886 456899999999999999998877776655
No 4
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.5e-48 Score=408.49 Aligned_cols=418 Identities=16% Similarity=0.161 Sum_probs=386.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 008695 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQ 191 (557)
Q Consensus 113 k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~l-g~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~ 191 (557)
|+++++++|.+++++.+.+++++|+.++|++ |++++++++++.++.++...+..+++.+.+++++|++|+||+|++++.
T Consensus 12 k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~ 91 (453)
T PRK09575 12 RTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRI 91 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999999999999999999999995 999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 008695 192 ISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALV 271 (557)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 271 (557)
.++++.+++++++++.++.+.++++++.+++. |+++.+.+..|+++..++.|+..+...+.+++|+.|+++.++..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~--~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~ 169 (453)
T PRK09575 92 LTTGLLLLLLLGPIVSVILFLFADDFLRAQGA--EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMV 169 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 99999999999999999999999999999965 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc--cccCCCHHHHHHHHHHhHHHHHHHHH
Q 008695 272 VASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAF--AISIPLPSELLAIFELAAPVFVMMMS 348 (557)
Q Consensus 272 ~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~il~~~~p~~~~~~~ 348 (557)
++.++|+++|+++++.+++|+.|+++|+.+++++..++.++++++++. .++ +..+++++.+|+++++|.|.+++...
T Consensus 170 ~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~ 249 (453)
T PRK09575 170 IGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLY 249 (453)
T ss_pred HHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHH
Confidence 999999999999998889999999999999999998887766654332 222 22356788999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH
Q 008695 349 KVAFFTLLTYFATSMGT-ITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILGV 427 (557)
Q Consensus 349 ~~~~~~i~~~l~~~lg~-~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (557)
+...+.+.+.+.+++|+ +++|+++++.++..+.+.+..|++++.++.++ +++|+ +|.++ +++..+.++++++..++
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg-~~~Ga-~~~~~-~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 250 GSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVS-YYFGA-RQYDN-IKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHhcC-CChHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999985 68999999999999999999999999999995 59999 78999 99999999999999999
Q ss_pred HHHHHHHHhhhhcccccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHh
Q 008695 428 LLAIVGTSVPWLFPNIFTP-DKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVS 506 (557)
Q Consensus 428 ~~~~~~~~~~~~i~~lf~~-d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~ 506 (557)
+.++++..+++++.++|++ |+++.+.+.+++++..+..++++++.+..+.++|.||++..+..++..+++.+|..+++.
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~ll~ 406 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLFILP 406 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999995 789999999999999999999999999999999999999999988888888899988885
Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 507 GKGYGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 507 ~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
. .+|+.|+|++..+++++..++..+.+++
T Consensus 407 ~-~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 407 K-WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred H-HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 4 3899999999999999988877666655
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=8.8e-49 Score=407.06 Aligned_cols=418 Identities=19% Similarity=0.224 Sum_probs=370.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQG-SSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~l-g~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
+++.|+++++++|.+++++++.+++++|+.++||+ |++++|+++++.++.++...+..+++.+.++++||++|+||+|+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45579999999999999999999999999999998 67799999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHH
Q 008695 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 267 (557)
+++..++++.+++++++++.++...+.++++.+++. |+|+.+.+.+|+++..++.|+..+..++++++|+.|+++.++
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGG--SEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999998888889999998866 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc--cccCCC-HHHHHHHHHHhHHHH
Q 008695 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG-YNAF--AISIPL-PSELLAIFELAAPVF 343 (557)
Q Consensus 268 ~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~il~~~~p~~ 343 (557)
+.++++.++|+++|++|++.+++|+.|+++||.+++++..++..+++.+++ .++. +..+++ ++.+|+++++|.|.+
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence 999999999999999999988999999999999999998887766665432 1211 112333 357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHH
Q 008695 344 VMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGA 423 (557)
Q Consensus 344 ~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (557)
+++..+...+.+.+.+++++|++++|+|+++.++.++.++++.|++++.++++ ++++|+ +|+++ +|+..+.+++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lv-g~~~Ga-~~~~~-a~~~~~~~~~~~~ 319 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHS-GQAYGA-RDGSQ-LLDVWRAACRQSG 319 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHcC-CCHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 569999 78999 9999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhcCCchhHHHHHHHHHHHHH
Q 008695 424 ILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAIL----SLEGTLLAGRDLKFVSFSMSGCFSLGA 499 (557)
Q Consensus 424 ~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~v~i 499 (557)
+++.+.+++++++++++.++|++|+++.+.+..++++..+..+..+.+. ++.+.++|. |++.++..+....++
T Consensus 320 ~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~~~~~~~~~~-- 396 (441)
T PRK10367 320 IVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNSMAVAAAGFAL-- 396 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999998876533222333 455555555 799999888776543
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 008695 500 LALLLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLSP 537 (557)
Q Consensus 500 ~~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~ 537 (557)
.++..+ ++|+.|+|++..+++.++.++..++++++
T Consensus 397 --~~~~~~-~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~ 431 (441)
T PRK10367 397 --TLLTLP-WLGNHGLWLALTVFLALRGLSLAAIWRRH 431 (441)
T ss_pred --HHHHHH-HcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223 47999999999999999999998888763
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.3e-47 Score=403.09 Aligned_cols=425 Identities=17% Similarity=0.144 Sum_probs=391.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Q 008695 107 SIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKN 186 (557)
Q Consensus 107 ~~~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~ 186 (557)
+.++++|+++++++|.+++++...+++.+|+.+++++|++++++++.+.++......+..|++.+..+.+||++|++|++
T Consensus 6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 44566799999999999999999999999999999999999999999999888777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH
Q 008695 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (557)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~ 266 (557)
+.++..++++.+++++++++.++.+.+++++..+++. |+|+.+.+..|+++..++.|+..+..++++++++.|+++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 163 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNL--EPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPT 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 9999999999999999999999998999999999865 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHhc----cCcchHHHHHHHHHHHHHHHHHHHHHHhhcccc-c----ccccCCCHHHHHHHHH
Q 008695 267 LKALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGYN-A----FAISIPLPSELLAIFE 337 (557)
Q Consensus 267 ~~~~~~~~~~~i~l~~~li~~----~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~il~ 337 (557)
++.++++.++|+++++++++. +++|+.|+++|+.+++++..++..+++++++.. . .++.+++++.+|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 999999999999999999864 578999999999999999998887777654321 1 1223567899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHH
Q 008695 338 LAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKS 417 (557)
Q Consensus 338 ~~~p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~ 417 (557)
+++|.+++...+...+.+++.+++++|++++|+++++.++.++.+.++.+++.+.++.++ +++|+ +|+++ +++..+.
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~-~~~Ga-~~~~~-~~~~~~~ 320 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVG-FELGA-GRTLD-ARQYAYI 320 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-CCHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999995 58999 68999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH-H
Q 008695 418 LVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCF-S 496 (557)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 496 (557)
+++++..++++.++++..+++++.++|++|+++.+....++++..+..++++++.+.+++++|.||++.+++.++.+. +
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~ 400 (456)
T PRK01766 321 GLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWV 400 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 497 LGALALLLVS-GKGYGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 497 v~i~~~~~l~-~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
+.+|+.+++. ..++|+.|+|++..+++++..++.++++++
T Consensus 401 ~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 401 LGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988875 346899999999999999999998888876
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=4.1e-35 Score=312.74 Aligned_cols=417 Identities=13% Similarity=0.028 Sum_probs=354.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhh-hhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHH
Q 008695 115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLEL-AALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEVQH 190 (557)
Q Consensus 115 i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~l-a~~~~a~~i~~~~~~~~--~~l~~~~~~~vs~~~g~~~~~~~~~ 190 (557)
+.|.+.-.+++++++.+++++|..++++ +|++++ ++++++.++.+....+. .|++.+..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5677888899999999999999999999 899999 89999999987776554 357788777776654322 57776
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHH
Q 008695 191 QISVLLFVGL-ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (557)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 269 (557)
....++.... +.++++.++.+++++++..++..+.+++..+.+..|++++.++.|+..+....++++|+.|+++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6666655554 444455677778889888887433366777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHhccCcchHHHH--HHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHHHH
Q 008695 270 LVVASAVNGIGDIVLCRFLGYGIAGAA--WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (557)
Q Consensus 270 ~~~~~~~~i~l~~~li~~~~~Gv~Gaa--~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~ 347 (557)
+++.++++++..+++. +++|+.|++ +++.+++.+..++.+++.+|++.+.....+.+++.+|++++++.|..+++.
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~ 237 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRDPGLKRFLKLFLPTTLGSS 237 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCChhHHHHHHHHHHHHHHHH
Confidence 9999888877544444 789999998 999999999988877776654322111224467889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHH
Q 008695 348 SKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILG 426 (557)
Q Consensus 348 ~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~-~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (557)
..++...+++.+.+.+|++++++|+.+.++.++.. .+..+++++..|.+++ ++|+ +|.++ +++..++++++...++
T Consensus 238 ~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~-~~~~-~~~~~-~~~~~~~~~~~~~~~~ 314 (502)
T TIGR01695 238 ASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSR-HASE-GNWNE-LRDLLNQGIRLSLLLT 314 (502)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCHHH-HHHHHHHHHHHHHHHH
Confidence 99999999998878889999999999999998875 4678999999999965 7888 68999 9999999999999999
Q ss_pred HHHHHHHHHhhhhcccccCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 008695 427 VLLAIVGTSVPWLFPNIFTP----DKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALAL 502 (557)
Q Consensus 427 ~~~~~~~~~~~~~i~~lf~~----d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~ 502 (557)
++.++++.++++++..+|.+ |++..+.+..++.++++..++.+++.++.+.+++.||++..++.++...+++++++
T Consensus 315 ~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~ 394 (502)
T TIGR01695 315 IPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLS 394 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999998875 56778889999999999999999999999999999999999999999889999998
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 008695 503 LLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLSPTG 539 (557)
Q Consensus 503 ~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~~ 539 (557)
+++.+. +|+.|+|++..+++.+..++..++++|+.+
T Consensus 395 ~~l~~~-~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~ 430 (502)
T TIGR01695 395 LLLIFP-LGLVGIALATSAASMVSSVLLYLMLNRRLK 430 (502)
T ss_pred HHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888764 899999999999999999988888887654
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=323.75 Aligned_cols=420 Identities=17% Similarity=0.157 Sum_probs=385.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCHHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNM-SYIFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~-~~~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
+.|.|++++++.|+.+..+.+++.+++++.++||+|+.++++.+++.++.+.. ..+..|+..+.+++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999864 66778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHH
Q 008695 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 267 (557)
.+.+.+++..+....+++...+. .+.++++..+++ |+++.+.+..|.+++.+..+.......+..++|++++..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~-~~~~~il~~lgq--~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLI-LNSEPILLLLGQ--DPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHhCC--ChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999999999885 778999999977 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccCCCHHHHHHHHHHhHHHHHHH
Q 008695 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG-YNAFAISIPLPSELLAIFELAAPVFVMM 346 (557)
Q Consensus 268 ~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~il~~~~p~~~~~ 346 (557)
+......++|+.+++++++.+++|+.|++++..+++++...++..|....+ ...+.....+++++++++++++|.+++.
T Consensus 181 ~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~~~~~~lai~s~~mi 260 (473)
T KOG1347|consen 181 VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSWGPFFALAIPSAVMI 260 (473)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhHHHHHHHhhcchhee
Confidence 999999999999999999999999999999999999999998888876544 1112111122889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHH
Q 008695 347 MSKVAFFTLLTYFATSMG--TITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAI 424 (557)
Q Consensus 347 ~~~~~~~~i~~~l~~~lg--~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 424 (557)
+.|+|.+++..++.+.++ ..++++.++..++....++++.+++.++.+++ +|.+|+ +|+++ +|...+..+..+..
T Consensus 261 clE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv-~neLGa-g~p~~-ar~~~~v~~~~~~~ 337 (473)
T KOG1347|consen 261 CLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRV-SNELGA-GKPKR-ARVSAKVALQTSVA 337 (473)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHcC-CChhh-hhhHHHHHHHHHHH
Confidence 999999999999999997 58999999999999999999999999999999 679999 68999 99999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH-HHHHHHHHH
Q 008695 425 LGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGC-FSLGALALL 503 (557)
Q Consensus 425 ~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~i~~~~ 503 (557)
++...+..+...++.+..+|++|+++.+...++.+++++..+.++.+.++.|..+|.+.++...+.++.+ +++++|...
T Consensus 338 ~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~ 417 (473)
T KOG1347|consen 338 IGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGL 417 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999988876 578899888
Q ss_pred HHh-hcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 008695 504 LVS-GKGYGLPGCWYVLVGFQWTRFFLAFQRL 534 (557)
Q Consensus 504 ~l~-~~~~g~~Gi~~a~~~~~~~~~~~~~~~l 534 (557)
.+. ..++|..|+|+|+..+..+.........
T Consensus 418 ~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~ 449 (473)
T KOG1347|consen 418 YLGFFTKFGVKGLWIGILLGFSVQTLVLAIVT 449 (473)
T ss_pred EEEEEEecCceEEEeehHHHHHHHHHHHHHhe
Confidence 774 5679999999999998555555444433
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.9e-34 Score=292.09 Aligned_cols=336 Identities=24% Similarity=0.314 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 008695 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (557)
Q Consensus 121 p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~ 200 (557)
|.++++++..+++.+|+.+++++|++++++++++.++.++...+..+++++..+.++++.|++|+|+.++..++.+.+.+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHh
Q 008695 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIG 280 (557)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l 280 (557)
+++++.+++.+.+++++..+++. |++..+.+..|++++.+..++..+..+..+++++.|+++.++..++++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~ 158 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGA--DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIIL 158 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 6678889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHh-ccC-cchHHHHHHHHHHHHHHHHHHHHHHhhcccccc---cccCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008695 281 DIVLCR-FLG-YGIAGAAWATMASQVIAAYMMIINLNQKGYNAF---AISIPLPSELLAIFELAAPVFVMMMSKVAFFTL 355 (557)
Q Consensus 281 ~~~li~-~~~-~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i 355 (557)
+++++. .++ +|+.|+++++.+++++..++.+++.++++..+. +..+.+++.+|+++++|.|.+++++..++.+.+
T Consensus 159 ~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~ 238 (342)
T TIGR00797 159 NYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFAL 238 (342)
T ss_pred hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 999886 567 889999999999999998888777765332222 234567899999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008695 356 LTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILGVLLAIVGTS 435 (557)
Q Consensus 356 ~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (557)
++.+++.+|++++++|+++.++.++...++.+++.+..|.+++ ++|+ +|.++ +++..++++++...++++.++++.+
T Consensus 239 ~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 315 (342)
T TIGR00797 239 LALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQ-ALGA-GDPKR-AKEVARVALKLSLLLGLVLAIILIL 315 (342)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCC-CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999964 7888 68999 9999999999999999999999999
Q ss_pred hhhhcccccCCCHHHHHHHHHHHHHH
Q 008695 436 VPWLFPNIFTPDKVIIQEMHKVLVAY 461 (557)
Q Consensus 436 ~~~~i~~lf~~d~~~~~~~~~~l~i~ 461 (557)
+++++.++|++|+++.+.+..++++.
T Consensus 316 ~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 316 FREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999998888888764
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=8.7e-33 Score=293.79 Aligned_cols=410 Identities=13% Similarity=0.081 Sum_probs=348.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 008695 116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (557)
Q Consensus 116 ~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~~-~~l~~~~~~~vs~~~g~~~~~~~~~~~~ 193 (557)
.+.+.|.++++++..+.+++|+.+++| +|++++|+++.+.++..+...+. .|++.+..+.++|..|++|+++.++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 79999999999999988877765 6899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 008695 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273 (557)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~ 273 (557)
.++.+.++.++++.++.+.+++++...+++ |++. ..+++++.+..++..+....++++|+.++.+..+..++++
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~--~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLK--DERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcC--ChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999998888888888877654 3332 3578888999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHh-----ccCcchHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc---cccCCCHHHHHHHHHHhHHHH
Q 008695 274 SAVNGIGDIVLCR-----FLGYGIAGAAWATMASQVIAAYMMIINLNQKGYN--AF---AISIPLPSELLAIFELAAPVF 343 (557)
Q Consensus 274 ~~~~i~l~~~li~-----~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~il~~~~p~~ 343 (557)
.++++.++..++. ..++|+.|+++++.+++++..++.+++++++++. +. ++.+.+++.+|++++++.|.+
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~ 235 (488)
T TIGR02900 156 QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLT 235 (488)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHH
Confidence 9999877666553 2357889999999999999988776665443221 11 122445778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----C---hH---HHHHH-HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHH
Q 008695 344 VMMMSKVAFFTLLTYFATSM----G---TI---TLAAH-QVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLAR 412 (557)
Q Consensus 344 ~~~~~~~~~~~i~~~l~~~l----g---~~---~vaa~-~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~ 412 (557)
++++..++...+++.++++. | .+ .++.+ +++.++..+...+..+++++..|.+++ ++|+ +|.++ ++
T Consensus 236 l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~-~~~~-~~~~~-~~ 312 (488)
T TIGR02900 236 LSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISE-AMAK-KNYSS-IE 312 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHH-HHHc-CCHHH-HH
Confidence 99999999999999888764 2 12 22223 355667777778889999999999965 7888 68999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH
Q 008695 413 MLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMS 492 (557)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 492 (557)
+..++.+++...++.+.++++..+++++..+|.++++ +..+++++++..++.+++....+.+++.||+|..++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 388 (488)
T TIGR02900 313 KRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSL 388 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 9999999999999999999999999999988876543 466788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--hcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 008695 493 GCFSLGALALLLVS--GKGYGLPGCWYVLVGFQWTRFFLAFQRLLSPTG 539 (557)
Q Consensus 493 ~~~~v~i~~~~~l~--~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~~ 539 (557)
.+.++++++++++. + ++|+.|+|++..+++.+..++..+..+|..+
T Consensus 389 ~~~i~~i~l~~~l~~~~-~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~ 436 (488)
T TIGR02900 389 IGAIVKIILLFVLTSIP-SINIYGYAITFIITSVLVTILNLAEIKKNIR 436 (488)
T ss_pred HHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99899999888875 5 4899999999999999999999888887544
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.5e-30 Score=270.47 Aligned_cols=401 Identities=9% Similarity=-0.012 Sum_probs=333.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 008695 115 IMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQI 192 (557)
Q Consensus 115 i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~-~~~l~~~~~~~vs~~~g~~~~~~~~~~~ 192 (557)
+.|.+.....++++..+.+++-..++.| +|++++|.++...++..+...+ ..|++.+.+..++|. ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 4567777888899999999999999999 7999999999999888877666 477888888899988 78889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 008695 193 SVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVV 272 (557)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~ 272 (557)
..++.+.+..+++++++.+.+.+++...+++ +++ -..+..+..+..++..+.....+.+|+.|+++.++..+++
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~ 154 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFG--HTD----YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV 154 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765 333 2356677777777778888999999999999999999999
Q ss_pred HHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ccCCCHHHHHHHHHHhHHHHHHHHHHH
Q 008695 273 ASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFA--ISIPLPSELLAIFELAAPVFVMMMSKV 350 (557)
Q Consensus 273 ~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~il~~~~p~~~~~~~~~ 350 (557)
+.++|+++ +++++. ..|+.|+++|+.+++.+..+..++++.+++..+.+ ..+++++.+|+++++|.|..+++...+
T Consensus 155 ~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~ 232 (416)
T PRK15099 155 GSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAGQLGKFTLMALITSVTLP 232 (416)
T ss_pred HHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 444432 23999999999999999887766666544322221 235678899999999999999999999
Q ss_pred HHHHHHHHHHH-hcChHHHHHHHHHHHHHHH-HHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHH
Q 008695 351 AFFTLLTYFAT-SMGTITLAAHQVMIQTLMM-CTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILGVL 428 (557)
Q Consensus 351 ~~~~i~~~l~~-~lg~~~vaa~~i~~~~~~l-~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
+.+.+++.+++ .+|++++|.|+++.|+.+. ...+..+++++..|.+++ + +|.++ .++..++..+....++++
T Consensus 233 i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~-~----~~~~~-~~~~~~~~~~~~~~~~~~ 306 (416)
T PRK15099 233 VAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSR-L----TEKRD-ITREIVKALKFVLPAVAA 306 (416)
T ss_pred HHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----CChHH-HHHHHHHHHHHHHHHHHH
Confidence 99999998886 7899999999999999775 578999999999999954 2 46799 999999999999999999
Q ss_pred HHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 008695 429 LAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVSGK 508 (557)
Q Consensus 429 ~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~~~ 508 (557)
.+++++++++++.++|.+|+.. .+.+++++..++.++...+..+...+...+.++......+....+.+++++++.+.
T Consensus 307 ~~~~~~l~a~~ii~l~~g~~~~--~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~~li~~ 384 (416)
T PRK15099 307 ASFTVWLLRDFAIWLLFSNKFT--AMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAHWLIPL 384 (416)
T ss_pred HHHHHHHHHHHHHHHhccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887632 35667777777777776666655555567777777788888888899999998875
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH
Q 008695 509 GYGLPGCWYVLVGFQWTRFFLAFQRL 534 (557)
Q Consensus 509 ~~g~~Gi~~a~~~~~~~~~~~~~~~l 534 (557)
+|..|++++..+++.+.+.+.....
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~ 409 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVF 409 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887654433
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=8.9e-29 Score=257.54 Aligned_cols=393 Identities=13% Similarity=0.056 Sum_probs=349.5
Q ss_pred cC-hhhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 008695 143 GS-SLELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALS 219 (557)
Q Consensus 143 lg-~~~la~~~~a~~i~~~~~~~~--~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (557)
+| +++..++..+..+.+++..+. .+++.+..|...+.. ++++++.++..+..+.+..++.+.++++.+++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 446778999999999887665 358999999999998 89999999999999999999999999999999999999
Q ss_pred HccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhhHHHHhccCcc---hHHHH
Q 008695 220 AFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYG---IAGAA 296 (557)
Q Consensus 220 ~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G---v~Gaa 296 (557)
.+.++.|++..+.+..+.+++.+..++..+..++.+++|++++...+....++.++..++..+++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 998777889999999999999999999999999999999999999999999998887666444443 4566 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 008695 297 WATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQ 376 (557)
Q Consensus 297 ~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~ 376 (557)
+|..++.+++.++.+...+|.+.+.....+.+.++.|++++...|..+.....++...+++.+++.+++..+++++.+.+
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~ 241 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQR 241 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 99999999999998888887664322223445678999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC----CCHHHH
Q 008695 377 TLMMCT-VWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFT----PDKVII 451 (557)
Q Consensus 377 ~~~l~~-~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~d~~~~ 451 (557)
+.+++. .+..+++++..|.+++ ...+ +|.++ .++..+++++....+.+|.++++..+++++.++.. -|++..
T Consensus 242 l~~lp~~i~~~~i~tv~~P~ls~-~~~~-~d~~~-~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~ 318 (451)
T PF03023_consen 242 LYQLPLGIFAVSISTVVFPKLSR-LAAE-GDWEE-FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDT 318 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhc-CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHH
Confidence 999975 7788999999999976 5555 78999 99999999999999999999999999999997543 267778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHH
Q 008695 452 QEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVSGKGYGLPGCWYVLVGFQWTRFFLAF 531 (557)
Q Consensus 452 ~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~ 531 (557)
+.+..++.+++++.++.+++.++...+++.+|+|.+++.+....++++++.+++.+. +|..|+.++..++.++..++.+
T Consensus 319 ~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~-~g~~Glala~sl~~~i~~~~l~ 397 (451)
T PF03023_consen 319 QLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF-FGVAGLALATSLSAIISALLLY 397 (451)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999888765 9999999999999999999999
Q ss_pred HHHhcCCcccc
Q 008695 532 QRLLSPTGILY 542 (557)
Q Consensus 532 ~~l~~~~~~~~ 542 (557)
+.++|+.+...
T Consensus 398 ~~l~r~~~~~~ 408 (451)
T PF03023_consen 398 ILLRRRLGLFS 408 (451)
T ss_pred HHHHHHcCCcc
Confidence 99998776443
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=8.4e-28 Score=245.65 Aligned_cols=426 Identities=11% Similarity=0.003 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCh-hhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCHHHH
Q 008695 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSS-LELAALGPGTVLCDNMSYIF--MFLSIATSNLVATSLTNRDKNEV 188 (557)
Q Consensus 113 k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~-~~la~~~~a~~i~~~~~~~~--~~l~~~~~~~vs~~~g~~~~~~~ 188 (557)
++++|.++-....++++.+.+++...+++. +|. ....++..+..+.+++.-+. ..++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 678888888899999999999999999999 787 46778999999999997776 45899999999999987778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC-ccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHH
Q 008695 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK-NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 267 (557)
++..+........+.+..+++..++++++......+. |++....+....+++.|..++..+.....+++|+.++...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 8888888778888888888888888888885554432 233333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHHHH
Q 008695 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (557)
Q Consensus 268 ~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~ 347 (557)
+..+..++.-+....++....+.-..+.+||+.++.+++.++.+..++|.+......+..+.+++|++++...|..+...
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~lk~~~~~~~p~~l~~s 246 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGLKRFLKLMLPALLGVS 246 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 99999988877555555533332467889999999999999999999887644333344556899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHH
Q 008695 348 SKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILG 426 (557)
Q Consensus 348 ~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~-~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (557)
..++...+++.+++.+.+.+++.++.+.++.+++. .+..+++++..|.+++ +..+ +|.++ .++..+++++++.+++
T Consensus 247 isQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr-~~~~-~~~~~-~~~~l~~~i~l~lll~ 323 (518)
T COG0728 247 ISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSR-HAAN-GDWPE-FLKLLDWGLRLTLLLT 323 (518)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhc-CChHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999975 8999999999999976 5555 68899 9999999999999999
Q ss_pred HHHHHHHHHhhhhcccc-cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 008695 427 VLLAIVGTSVPWLFPNI-FTP---DKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALAL 502 (557)
Q Consensus 427 ~~~~~~~~~~~~~i~~l-f~~---d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~ 502 (557)
+|.++++.++++++.++ |.. ++++...+.+.+..+.++.++.....++...+++.+|+|.++++.+++.++++.++
T Consensus 324 lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~ 403 (518)
T COG0728 324 LPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLN 403 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHH
Confidence 99999999999999974 432 45667789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 008695 503 LLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLSPTGILY 542 (557)
Q Consensus 503 ~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~~~~~ 542 (557)
+++.+. +|..|+..+..++.++++.+.++.++|+.....
T Consensus 404 ~~l~~~-~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~ 442 (518)
T COG0728 404 LLLIPP-LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP 442 (518)
T ss_pred HHHHhh-ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 777654 899999999999999999999999998776554
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.94 E-value=5e-23 Score=218.89 Aligned_cols=396 Identities=11% Similarity=0.009 Sum_probs=316.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHH
Q 008695 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQH 190 (557)
Q Consensus 113 k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~~-~~l~~~~~~~vs~~~g~~~~~~~~~ 190 (557)
++..+-+....++++...+.+++...+++| +|++++|.++.+..+..+...+. .|++.+.. |. +++. ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~--~~~~---~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR--QDIS---HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc--ccCC---HH
Confidence 567777888899999999999999999999 79999999999999988777665 56666542 21 1111 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 008695 191 QISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKAL 270 (557)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 270 (557)
.....+.+..+.++++.++.+.+++++..++. +|+ ....+++..+..++..+.....+.+++.++.+......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH---NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 44566677777787777777777777766653 223 34567777888888888888999999999999988888
Q ss_pred HHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHHHHHHH
Q 008695 271 VVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKV 350 (557)
Q Consensus 271 ~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~ 350 (557)
.+..++..++...+.. .++|+.+.+++..++..+..++..+..++ ++++ ....+++.+|++++++.|...++...+
T Consensus 149 ~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~--~~~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 149 ISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRP--ALHFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCc--cceecHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888877766665543 57899999999999998877655433322 2211 123467889999999999999999999
Q ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHH
Q 008695 351 AFFTLLTYFATSM-GTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILGVL 428 (557)
Q Consensus 351 ~~~~i~~~l~~~l-g~~~vaa~~i~~~~~~l~~-~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
+...+|+.+++++ |+++++.|+.+.++.+++. .+...++.+..|.+++ . + +|.++ .++..++.+++...+++|
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~-~--~-~~~~~-~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAK-I--Q-DDTEK-LRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-h--c-CCHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999998876 9999999999999988754 4555678888899854 2 3 57889 999999999999999999
Q ss_pred HHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhc
Q 008695 429 LAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVSGK 508 (557)
Q Consensus 429 ~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~~~ 508 (557)
+++++.++++++..++.+|+. ..+...+.++.+..++..+.......+++.|++|...+.++....+.+|..+.+.+.
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~~--~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 377 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEKW--NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQL 377 (492)
T ss_pred HHHHHHHHhHHHHHHhcChhH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999887766553 457788889988888888899999999999999999988888888888877777654
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 509 GYGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 509 ~~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
+|+.|+.++..+++.+..+..++.+.|
T Consensus 378 -~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 378 -AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988888777744
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.90 E-value=6.4e-20 Score=194.59 Aligned_cols=387 Identities=13% Similarity=0.066 Sum_probs=301.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHH
Q 008695 112 IKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQ 189 (557)
Q Consensus 112 ~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~~-~~l~~~~~~~vs~~~g~~~~~~~~ 189 (557)
.+++.+.+.-...+++...+.+++-...++| +|+++.|.++.+.++..++..+. .|+..+....+++...++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~ 84 (480)
T COG2244 5 KKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLI 84 (480)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHH
Confidence 3788889999999999999999999999999 89999999999999999888777 788899998888886555554444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHH
Q 008695 190 HQ-ISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (557)
Q Consensus 190 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 268 (557)
.. ...........+.+........ .+. .+.....++......+........++++|+.++.+....
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (480)
T COG2244 85 LLSVLLLLLLALILLLLLLLIAYLL-API------------DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLAL 151 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccc------------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 44 4444444333333333332211 111 112445677888999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHh-hcccccccccCCCHHHHHHHHHHhHHHHHHHH
Q 008695 269 ALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLN-QKGYNAFAISIPLPSELLAIFELAAPVFVMMM 347 (557)
Q Consensus 269 ~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~ 347 (557)
..+.. ..-....+.+. .....+..++..++..........+.. ++++......+..++.++++++++.|..+...
T Consensus 152 ~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 152 SIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHH
Confidence 84444 11122122222 134455666666666665555444443 22212222222247899999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHH
Q 008695 348 SKVAFFTLLTYFATSM-GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILG 426 (557)
Q Consensus 348 ~~~~~~~i~~~l~~~l-g~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (557)
...+...+|+.+++.+ |+++++.|+.+.++......+..+++.+..|.+++ .+.+ +|.++ .++..++.+++...++
T Consensus 228 ~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~-~~~~-~~~~~-~~~~~~~~~~~~~~~~ 304 (480)
T COG2244 228 LNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSR-AYAE-GDRKA-LKKLLRQSLKLLLLIS 304 (480)
T ss_pred HHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHH-HHHc-CcHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999998887 89999999988999999999999999999999976 5666 67888 8999999999999999
Q ss_pred HHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHh
Q 008695 427 VLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVS 506 (557)
Q Consensus 427 ~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~ 506 (557)
++..+++.++++++..++.+++.. .....+.++.+..++.+........+++.|+++...+.+....+++..++++++
T Consensus 305 ~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li 382 (480)
T COG2244 305 IPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLI 382 (480)
T ss_pred HHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999877766543 267788888889999999999999999999999999999999999999999998
Q ss_pred hcCCChhhHHHHHHH
Q 008695 507 GKGYGLPGCWYVLVG 521 (557)
Q Consensus 507 ~~~~g~~Gi~~a~~~ 521 (557)
+. +|+.|...+...
T Consensus 383 ~~-~g~~g~~~a~~~ 396 (480)
T COG2244 383 PR-FGLIGAAIATAS 396 (480)
T ss_pred Hh-hhhhhHHHHHHH
Confidence 75 899999888833
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.88 E-value=8.4e-21 Score=199.34 Aligned_cols=210 Identities=16% Similarity=0.092 Sum_probs=194.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 008695 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 108 ~~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
.++..|+++++++|.++.++.+.....+|+.+++++|++++|+++++.++..+...+..|++.+.+++++|++|+||+|+
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCcc---ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCh
Q 008695 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNV---HILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSW 264 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~ 264 (557)
+++..+.++.++.+.+++++++.+++.+++.+++..++|+ |+.+.+..|+++.+++.++..+..++.+++||.|+++
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~ 390 (464)
T PRK00187 311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDAR 390 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccH
Confidence 9999999999999999999999999999999998532233 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008695 265 GPLKALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (557)
Q Consensus 265 ~~~~~~~~~~-~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~ 317 (557)
.+++.+++.. ++++++++++++.+++|+.|+++++.+++++..++....++++
T Consensus 391 ~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 391 TTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 8999999999988899999999999999999888776666443
No 17
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=1.3e-19 Score=190.80 Aligned_cols=208 Identities=16% Similarity=0.114 Sum_probs=195.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 008695 108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 108 ~~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
.++..|+++++++|.+++.+...+...++..+++++|++++|+++++.++.++...+..|++.+.++.++|++|+||+++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35567999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHH
Q 008695 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 267 (557)
+++..+.++.++..++++..++++.+++++..++.. |+|+.+.+..|+++..+..++..+..+..+++||.|+++.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTD--DPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 999999999999999999999999999999999864 889999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008695 268 KALVVAS-AVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (557)
Q Consensus 268 ~~~~~~~-~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~ 317 (557)
..++++. ++++++.+++.+.+++|+.|+++++.+++++..++.++++++.
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 7899999998887889999999999999999999887777554
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.85 E-value=4.1e-19 Score=186.72 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHH
Q 008695 329 PSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLA 408 (557)
Q Consensus 329 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~ 408 (557)
-+.+|+++++++|.+++++.......+++.+++++|++++|+++++.++..+.+.+..+++.+..+.++ +++|+ +|++
T Consensus 25 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvs-q~~Ga-~~~~ 102 (478)
T PRK10189 25 VLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVA-FSLGK-RDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-CCHH
Confidence 456999999999999999999999999999999999999999999999999999999999999999995 58999 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008695 409 KLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFT--PDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKF 486 (557)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (557)
+ +++..+.++.+++.++++.+++..++++++..+|. .|+++.+.+.+++++..++.++..++.++++.+||.||++.
T Consensus 103 ~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 103 R-ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9 99999999999999999999999999999999995 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-----cCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 487 VSFSMSGCFSLGALALLLVSG-----KGYGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 487 ~~~~~~~~~~v~i~~~~~l~~-----~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
+++.++...++++++.++++. .++|+.|+|+|+.+++++..++..+.+.+
T Consensus 182 ~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 182 PLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred hHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998887752 26899999999999999988776655543
No 19
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.84 E-value=6.4e-19 Score=183.58 Aligned_cols=208 Identities=17% Similarity=0.172 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccH
Q 008695 328 LPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNL 407 (557)
Q Consensus 328 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~ 407 (557)
.++..|+++++++|..+.++.......+|+.++++++++++|+-+++.++..+...+..+++.+..+.+++ .+|+ +|.
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq-~~Ga-~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQ-AIGA-GDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHcC-Cch
Confidence 56789999999999999999999999999999999999999999999999999999999999999999965 8999 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 008695 408 AKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFV 487 (557)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 487 (557)
++ +++..+.++.++.+++++.+++...+++++..++..++++.+.+.+++.+..++.++..+..++.+.+|+.||+|.+
T Consensus 90 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 168 (455)
T COG0534 90 KK-AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTP 168 (455)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 99 99999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--cC-CChhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 008695 488 SFSMSGCFSLGALALLLVSG--KG-YGLPGCWYVLVGFQWTRFFLAFQRLLSPT 538 (557)
Q Consensus 488 ~~~~~~~~~v~i~~~~~l~~--~~-~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~ 538 (557)
++.++.+.++++++.++++. ++ +|+.|+.+|+++++++.+++.++.+.+++
T Consensus 169 m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 169 MYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998863 34 99999999999999999998888777765
No 20
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.82 E-value=2.5e-18 Score=179.05 Aligned_cols=206 Identities=15% Similarity=0.115 Sum_probs=188.9
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhccccc
Q 008695 328 LPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSM-GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRN 406 (557)
Q Consensus 328 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~l-g~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~ 406 (557)
-+++.|+++++++|..++++.......+|+.+++++ |++++|+.+++.++..+...+..+++.+..+.++ +++|+ +|
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvs-q~~Ga-~~ 81 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTA-QAFGA-KN 81 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC-CC
Confidence 456789999999999999999999999999999999 6789999999999999999999999999999995 48999 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008695 407 LAKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKF 486 (557)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (557)
.++ +++..+.++.++.+++++..+....+.+++..++..|+++.+.+.+++++..++.++.....++.+.+|+.||++.
T Consensus 82 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 160 (441)
T PRK10367 82 PQA-LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA 160 (441)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999 9999999999999999999888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 487 VSFSMSGCFSLGALALLLVS-GKGYGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 487 ~~~~~~~~~~v~i~~~~~l~-~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
+++.+++..++++++.++++ ..++|+.|+|+|+.+++++..++..+.+.+
T Consensus 161 ~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 161 PVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999775 456899999999999999888766555544
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.82 E-value=3.2e-18 Score=179.54 Aligned_cols=207 Identities=14% Similarity=0.086 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhccccc
Q 008695 328 LPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSM-GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRN 406 (557)
Q Consensus 328 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~l-g~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~ 406 (557)
+++..|+++++++|.+++++.......+++.+++++ |++++|+++++.++..+...+..+++.+..+.++ +++|+ +|
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvs-q~~Ga-~~ 84 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLS-IKRGE-GD 84 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHhcC-CC
Confidence 456789999999999999999999999999999996 9999999999999999998899999999999995 58999 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008695 407 LAKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKF 486 (557)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 486 (557)
.++ +++..+.++.++.+++++.+++...+++++..+|..|+++.+...+++++..++.++..+.....+.+|+.|+++.
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~ 163 (453)
T PRK09575 85 LEK-AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNL 163 (453)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 008695 487 VSFSMSGCFSLGALALLLVS-GKGYGLPGCWYVLVGFQWTRFFLAFQRLLSP 537 (557)
Q Consensus 487 ~~~~~~~~~~v~i~~~~~l~-~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~ 537 (557)
+++.++.+.++++++.++++ .+++|+.|+|++..+++++..++..+.+.++
T Consensus 164 ~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 164 ATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999998885 4569999999999999999988866655543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=2.7e-17 Score=175.54 Aligned_cols=235 Identities=16% Similarity=0.071 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCHHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSY-IFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~-~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
+++.|++++.+.|..++++...+...+|+.+.+.+|++++++++.+..+.++... +..+++.+..|.++|.+|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3456999999999999999999999999998666899999999999999887765 457899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCC--ccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChH
Q 008695 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK--NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~ 265 (557)
.++.+++++.+...+++++++++..+++++..++++++ |+|..+.+..++++++++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 99999999999999999999999999999999987643 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHH
Q 008695 266 PLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVM 345 (557)
Q Consensus 266 ~~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~ 345 (557)
+++..+...++|++++++++ +.+|+.|+++|+.+++.+..++..++++|+.. .....+..+++.|...+..++
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~as~~m 451 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRRLK-----GILPFGVLKVLAKLVIASAII 451 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 67899999999999999998888777766521 122455667777776666666
Q ss_pred HHHHH
Q 008695 346 MMSKV 350 (557)
Q Consensus 346 ~~~~~ 350 (557)
.....
T Consensus 452 ~~~~~ 456 (502)
T TIGR01695 452 GGVLY 456 (502)
T ss_pred HHHHH
Confidence 55443
No 23
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.76 E-value=1.2e-15 Score=159.11 Aligned_cols=207 Identities=19% Similarity=0.139 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHHHH
Q 008695 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEV 188 (557)
Q Consensus 110 ~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~-~~l~~~~~~~vs~~~g~~~~~~~ 188 (557)
++.|++++...|.+++.....++.++|+.+.+.+++.++++++.+..+.+++..+. ..+++..-|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34699999999999999999999999999999999999999999999999987665 78999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcc--CCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH
Q 008695 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT--GSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~ 266 (557)
++.+++.+...+++.+++++.+..+++++.++++ +..++|..+....++++.++++|+..+...+...+.++||+|.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 9999999999999999999999999999999886 44577778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008695 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG 318 (557)
Q Consensus 267 ~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~ 318 (557)
+...+++.++|+++++++. +.+|+.|.++|+.++.++..+++++.++|+.
T Consensus 355 ~~~~~~~~~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLV--PFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998888 7899999999999999999999988887764
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=5.1e-18 Score=152.22 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 008695 121 PATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGL 200 (557)
Q Consensus 121 p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~ 200 (557)
|.++++++..+.+.+|+.+++++|++++++++++..+.++...+..|++.|..+.++|++|++|+|++++..++++.+.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH-HHHHH
Q 008695 201 ACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVAS-AVNGI 279 (557)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~ 279 (557)
.+++++.++.+.+.+++..+++. |+|+.+.+..|+++..+..|+..+.....++++|.|+++.+++.++++. +++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGN--DPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSS--TTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhh--hHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999965 7889999999999999999999999999999999999999999999998 99999
Q ss_pred hhHH
Q 008695 280 GDIV 283 (557)
Q Consensus 280 l~~~ 283 (557)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8875
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.72 E-value=5.3e-15 Score=157.39 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCh------hhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSS------LELAAL----GPGTVLCDNMSYIFMFLSIATSNLVA 177 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~------~~la~~----~~a~~i~~~~~~~~~~l~~~~~~~vs 177 (557)
++..|++++.++|.+++++...+.+.+|+.++++ +++ ++.+.+ +.+.++..++..+..+++.+..|.++
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s 300 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDIS 300 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999988 332 122222 34556667776667899999999999
Q ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 008695 178 TSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSAS 257 (557)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l 257 (557)
+..|++|+++.++..++...+..++++++++++..+++++..++.+ +++ +..+++++++..++..+.....+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~----~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD----AGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998864 222 5788999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008695 258 LGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (557)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~ 317 (557)
++.||++.+++.+++..++|++++++++..+.+|+.|+++++.+++.+..++..+..+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766789999999999999999988887777653
No 26
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.71 E-value=2.5e-15 Score=152.14 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHH
Q 008695 341 PVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVI 420 (557)
Q Consensus 341 p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 420 (557)
|.++++....+...+++.+++++|++++++++++.++..+...+..+++++..|.+++ ++|+ +|+++ +++..+..+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~-~~g~-~~~~~-~~~~~~~~~~ 77 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQ-AVGA-GNYQR-LGRQAQQSLL 77 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH-HHCC-CChHH-HHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999965 7888 68999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 008695 421 IGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGAL 500 (557)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~ 500 (557)
+...++++.+++..++++++..+|..|++..+.+..++++..+..++.+++....+.+++.|+.+...+.++...+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~ 157 (342)
T TIGR00797 78 LALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987888888899999999999999999999999999999999999999988888888
Q ss_pred HHHHHhh--cC-CChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 501 ALLLVSG--KG-YGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 501 ~~~~l~~--~~-~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
..+++.. ++ +|+.|++++..+++++..++.++.+++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776654 45 679999999999999988877666665
No 27
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.70 E-value=9.8e-14 Score=142.74 Aligned_cols=241 Identities=17% Similarity=0.055 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHHHH
Q 008695 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEV 188 (557)
Q Consensus 110 ~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~-~~l~~~~~~~vs~~~g~~~~~~~ 188 (557)
.+.|++.+...|..++.....+..++|+.+-+.+.+...+.+..+..+++++..++ .++++.+.|..||...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 45799999999999999999999999999999999999999999999999998666 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC--CccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH
Q 008695 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGS--KNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~ 266 (557)
++..+.++.++.++.+|.++.+..+++|+.+.++.. .+++........+.....++++..+..++...+.+.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999999999999999988543 356667778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHHH
Q 008695 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMM 346 (557)
Q Consensus 267 ~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~ 346 (557)
+++.+++.++|++++++++ +.+|..|.++++.++.++.+.++++.++|+... .+ ...|.... ..|..+-..++.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~--~~-~~~~~~~~-~~k~~l~~~i~~ 462 (518)
T COG0728 389 MKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVY--LP-GRGWGLFL-ILKLLLASAIMA 462 (518)
T ss_pred hHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc-cchhhHHH-HHHHHHHHHHHH
Confidence 9999999999999997777 778889999999999999999888888776421 11 44566556 677777777766
Q ss_pred HHHHHHHHHH
Q 008695 347 MSKVAFFTLL 356 (557)
Q Consensus 347 ~~~~~~~~i~ 356 (557)
...+......
T Consensus 463 ~~~~~~~~~~ 472 (518)
T COG0728 463 AALLALLHLA 472 (518)
T ss_pred HHHHHHHHHH
Confidence 6655544443
No 28
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.67 E-value=2.1e-13 Score=133.07 Aligned_cols=267 Identities=13% Similarity=0.059 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 008695 116 MKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-FMFLSIATSNLVATSLTNRDKNEVQHQIS 193 (557)
Q Consensus 116 ~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~-~~~l~~~~~~~vs~~~g~~~~~~~~~~~~ 193 (557)
+|.+.-...+++...+.+++-..++.| +|++++|.++....+.++...+ ..|++.+....+++...+ +++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 456777888999999999999999999 7999999999999999888776 478888888888876432 445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 008695 194 VLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVA 273 (557)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~ 273 (557)
......++.+++...... +...+.. ++. ...+........++.........++++.++.+.....++..
T Consensus 80 ~~~~~~~~~~~i~~~~~~-----~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL-----IASFFGN---PSL---SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHcCC---chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444333332 2223322 222 22222222222257788888999999999999999999999
Q ss_pred HHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008695 274 SAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFF 353 (557)
Q Consensus 274 ~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~ 353 (557)
.+...++..+++. .+.++.+..++..++..+..++..++.+|+.+ .++...+++..|++++.+.|..+.....++..
T Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 149 SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876666664 33458999999999999888888777766532 34445568999999999999999999999999
Q ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhh
Q 008695 354 TLLTYFATSM-GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPE 398 (557)
Q Consensus 354 ~i~~~l~~~l-g~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~ 398 (557)
..+..+++.+ |++++|.|+++.++......+..++.++..|.+++
T Consensus 226 ~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~ 271 (273)
T PF01943_consen 226 QIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSR 271 (273)
T ss_pred HhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 99999999999999999999999999999999854
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.64 E-value=2e-16 Score=141.87 Aligned_cols=161 Identities=18% Similarity=0.212 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHH
Q 008695 341 PVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVI 420 (557)
Q Consensus 341 p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 420 (557)
|.+++++.+...+.+++.+++++|++++++++++.++..+...+..+++++..+.++ +++|+ +|+++ +++..+.++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s-~~~G~-~~~~~-~~~~~~~~~~ 77 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILIS-QNIGA-GDYKR-AKKVVRQGLL 77 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCS-SSTTT-CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceee-ccccc-ccccc-cccccccccc
Confidence 889999999999999999999999999999999999999999999999999999995 58999 78999 9999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH-HHHH
Q 008695 421 IGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCF-SLGA 499 (557)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~v~i 499 (557)
+..+++++.++++.++++++.++|++|+++.+.+.+++++..+..++.++.....++++|.|+++..++.++... ++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 157 (162)
T PF01554_consen 78 LSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINI 157 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHH
T ss_pred cchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865 8999
Q ss_pred HHHHH
Q 008695 500 LALLL 504 (557)
Q Consensus 500 ~~~~~ 504 (557)
|+.|+
T Consensus 158 ~l~yl 162 (162)
T PF01554_consen 158 PLAYL 162 (162)
T ss_dssp HHHHH
T ss_pred hHHhC
Confidence 98874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.60 E-value=8e-13 Score=140.72 Aligned_cols=201 Identities=16% Similarity=0.046 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKN 186 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~~-~~l~~~~~~~vs~~~g~~~~~ 186 (557)
+++.|++++.+.|.+.+++...+++.+|+.++|+ +|++++|.|+.+..+.+.+.... ..++....|..++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 3557999999999999999999999999999999 69999999999999988765444 45677788998886 67888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH
Q 008695 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (557)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~ 266 (557)
+.++.+.+.+.+...+++++.+.+..+++++..++++++ ...+...++++++...+..+.......+++.|+++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 999999999999999999999999999999999887632 5668899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008695 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (557)
Q Consensus 267 ~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~ 317 (557)
+..+++..+++++..+.+. ..+|+.|+++|+.+++.+...+.+++..|+
T Consensus 357 ~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887766665 568999999999999999888888777443
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.59 E-value=3.1e-13 Score=140.60 Aligned_cols=198 Identities=14% Similarity=-0.021 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChhhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIG-QGSSLELAALGPGTVLCDNM-SYIFMFLSIATSNLVATSLTNRDKN 186 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig-~lg~~~la~~~~a~~i~~~~-~~~~~~l~~~~~~~vs~~~g~~~~~ 186 (557)
++..|++++.+.|..++++...+...+|+.+++ ++|++++|.|+.+.++.+.. ..+..+++++..|.++++ +|++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~ 287 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKR 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChH
Confidence 455799999999999999999999999999998 58999999999999997754 677789999999999995 6778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH
Q 008695 187 EVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (557)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~ 266 (557)
+.++..++.......++++++++.+++++++..++.+++ .+.+..+++++.++..+..........+...++++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~----~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 288 DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK----FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988899999999997632 3446788889888888887777777777788888888
Q ss_pred HHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 008695 267 LKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLN 315 (557)
Q Consensus 267 ~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~ 315 (557)
....+...+++++++++++ +.+|..|+++++.+++.+..++......
T Consensus 364 ~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998 7899999999999999999887665443
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.59 E-value=1.5e-12 Score=138.19 Aligned_cols=187 Identities=18% Similarity=0.162 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
.+..|++++.+.|..++.+...+.+.+|+.++|+ +|++++|.|+.+..+......+...++....|..++...++|+++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 4567999999999999999999999999999999 799999999988888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHH
Q 008695 188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 267 (557)
.++...+++.+....+++..+.+..+++++...+++++ ...+...+.++++..++..+.......+++.|+++..+
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~----~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK----YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 99999999999999999999999999999999998743 22277889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHH
Q 008695 268 KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMAS 302 (557)
Q Consensus 268 ~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is 302 (557)
..+.++.++|.+++++++ +.+|..|+++++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 999999999999999999 888999999999 54
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.49 E-value=1.1e-10 Score=112.41 Aligned_cols=244 Identities=11% Similarity=0.027 Sum_probs=178.2
Q ss_pred HHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008695 132 MSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIF-MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIF 209 (557)
Q Consensus 132 ~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~~-~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
.+++-..+++| +|+++.|.++....+..+...+. .|+..... + ..++|+++.++..+......++.+++..++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899 79999999999988888776653 44444443 3 234666677777666665555555444443
Q ss_pred HHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhhHHHHhccC
Q 008695 210 TKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLG 289 (557)
Q Consensus 210 ~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~ 289 (557)
.. .+..++. +++ ...++....+..++.......++.+++.++.+..........++..++..++.. .+
T Consensus 78 ~~----~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 145 (251)
T PF13440_consen 78 AI----LIAYFFG---DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LG 145 (251)
T ss_pred HH----HHHHHhC---Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 22 2222332 211 334566777788888999999999999999999999999998888544444443 34
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHHH
Q 008695 290 YGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATS-MGTITL 368 (557)
Q Consensus 290 ~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~-lg~~~v 368 (557)
.++.+..++..++.++..++.....+++. +. .++.+..| .++.+.|..+.....+....++.++++. +|++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~ 219 (251)
T PF13440_consen 146 LNLWSILLAFIISALLALLISFYLLRRKL--RL---SFKFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV 219 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccc--CC---CchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 48889999999998887776665433221 11 11333334 7999999999999999999999999999 799999
Q ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHhhhhhh
Q 008695 369 AAHQVMIQTLMMCT-VWGEPLAQTAQSFMPE 398 (557)
Q Consensus 369 aa~~i~~~~~~l~~-~~~~~l~~a~~~~v~~ 398 (557)
|.|+++.++..... .+..++++...|.+++
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887 9999999999998853
No 34
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=1.4e-06 Score=86.21 Aligned_cols=411 Identities=13% Similarity=0.006 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHH
Q 008695 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNR---DKNEV 188 (557)
Q Consensus 113 k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~---~~~~~ 188 (557)
.+-.+.+.-.+..+++..+..++-+.++-| ++++.+|..++=..+.+-.. ..++=-.........|.. +..+.
T Consensus 8 ~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTi---LFlsREair~A~l~~gs~~~d~~te~ 84 (530)
T KOG2864|consen 8 ESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTI---LFLSREAIRLAELRIGSEPADTWTEF 84 (530)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHH---HHhhHHHHHHHhccCCCCCCccHHHH
Confidence 344455666667777777777766666666 79998887775544433222 222222222222222332 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccc-cHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHH
Q 008695 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVH-ILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL 267 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 267 (557)
.+..+.+..+.....+++.-+.+ .+...+ |+. ..+.-..-+.....++..-.+...+.-..|..-+.+...
T Consensus 85 ~n~~wlS~~L~~~i~~~~i~~wl-------~~~~s~-d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 85 INLLWLSVPLQTAINVACIYFWL-------GFLSSS-DEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHH-------HHhhcc-chhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 55555555555555555444332 221111 111 112222334444444554555555555666666666666
Q ss_pred HHHHHHHHHHHHhhHHH-Hhcc-CcchHHHHHHHHHHHHHHHHH-HHHHHhhccccc-------c----c-------ccC
Q 008695 268 KALVVASAVNGIGDIVL-CRFL-GYGIAGAAWATMASQVIAAYM-MIINLNQKGYNA-------F----A-------ISI 326 (557)
Q Consensus 268 ~~~~~~~~~~i~l~~~l-i~~~-~~Gv~Gaa~a~~is~~~~~~~-~~~~~~~~~~~~-------~----~-------~~~ 326 (557)
...-++.++.-+..+.. +.++ .+++.--|+|.........+. .+.|++.++..+ + + ...
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 66666766663333332 2223 345555566655555444442 233333333100 0 0 011
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhhhhhhhhc
Q 008695 327 PLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSM---GTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMPEFLYG 402 (557)
Q Consensus 327 ~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~l---g~~~vaa~~i~~~~~~l~~-~~~~~l~~a~~~~v~~~~~g 402 (557)
+|+ +.++.-....-+.+..++..+-+.++++.. .-.+-|.|.++.+..++.. .+..++-.......++ ...
T Consensus 237 fd~----d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~-~ls 311 (530)
T KOG2864|consen 237 FDN----DLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFAR-LLS 311 (530)
T ss_pred ccH----HHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHH-Hhh
Confidence 333 344444455666677777676666555532 4466788999988888753 6677777777777754 333
Q ss_pred ccccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008695 403 MNRNLAK--LARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLA 480 (557)
Q Consensus 403 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 480 (557)
. ++.++ -+-..+...++....+++.........++....++.+.......+...++++++.+++.+++.+..+...+
T Consensus 312 ~-~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A 390 (530)
T KOG2864|consen 312 R-DNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFA 390 (530)
T ss_pred c-cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 33444 04455566666666666665555555566666666544333333457899999999999999999999998
Q ss_pred cCCchhHHH---HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 008695 481 GRDLKFVSF---SMSGCFSLGALALLLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLSPTGIL 541 (557)
Q Consensus 481 ~~~~~~~~~---~~~~~~~v~i~~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~~~~ 541 (557)
..+.+..-. .+.+..++-.+.+|+|... +|..|..+|-++.+.++.....+..++..+.+
T Consensus 391 ~~t~~qi~~~n~~mlafSviflilsylL~~~-~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~ 453 (530)
T KOG2864|consen 391 VATSRQIDKHNKFMLAFSVIFLILSYLLIRW-FGLVGLILANIINMSLRILYSLRFIRHYYRDL 453 (530)
T ss_pred hccHHHHHhcccchhHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 766665543 4455556677788888764 89999999999999998887766555544333
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.99 E-value=1.4e-06 Score=82.64 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--h-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 008695 111 QIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGS--S-LELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE 187 (557)
Q Consensus 111 ~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg--~-~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~ 187 (557)
.+.++.++-+|+.++.+...+..-+-+.-+++-. + +.+|+|+++..+.-++..+...+-.....++ .+++++
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V-----~s~rsr 83 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFV-----NSKRSR 83 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHh-----cchhhh
Confidence 3478999999999999999998888888888732 3 4599999999999988888766665555554 333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH
Q 008695 188 VQHQISVLLFVGLACGFSMLIF-TKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~ 266 (557)
.+. ..-....+...+....++ .-.++..++.-..+ -+|++.+.+...+.++.+.-++..+....++++-=++++...
T Consensus 84 r~~-vl~~~vag~v~avi~~LIa~TpLG~~li~~lhg-Vs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 84 RKA-VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHG-VSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 222 221122222222221222 22334444443332 378999999999999999989999999999999877777776
Q ss_pred HHHHHHHHHHHHHhhHHHHhc---cCcchHHHHHHHHHHHHHHHH-HHH-H--HHhhcccccccccCCCHHHHHHHHHHh
Q 008695 267 LKALVVASAVNGIGDIVLCRF---LGYGIAGAAWATMASQVIAAY-MMI-I--NLNQKGYNAFAISIPLPSELLAIFELA 339 (557)
Q Consensus 267 ~~~~~~~~~~~i~l~~~li~~---~~~Gv~Gaa~a~~is~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~il~~~ 339 (557)
...++...+..+++..+++.. +.-+..=-.+|...+..+.+- +.+ + -++.+........+.+...+++++++.
T Consensus 162 ~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~ 241 (345)
T PF07260_consen 162 GSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFW 241 (345)
T ss_pred ehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHH
Confidence 666666665555555445421 111111111222222222221 111 1 222221111123355677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-c-C----hHHHHHHHHHHHHHHHHHHhh
Q 008695 340 APVFVMMMSKVAFFTLLTYFATS-M-G----TITLAAHQVMIQTLMMCTVWG 385 (557)
Q Consensus 340 ~p~~~~~~~~~~~~~i~~~l~~~-l-g----~~~vaa~~i~~~~~~l~~~~~ 385 (557)
+|.+.......+.-.+.+.+++| + | ++++|...+.+....+.+.+.
T Consensus 242 ~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~ 293 (345)
T PF07260_consen 242 WPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWL 293 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhH
Confidence 99999999999999999999999 4 3 366666666555555544443
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.97 E-value=3.7e-07 Score=96.44 Aligned_cols=418 Identities=12% Similarity=0.013 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhhhhhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 008695 117 KFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYI-F-MFLSIATSNLVATSLTNRDKNEVQHQIS 193 (557)
Q Consensus 117 ~~a~p~~~~~~~~~l~~~i~~~~ig~-lg~~~la~~~~a~~i~~~~~~~-~-~~l~~~~~~~vs~~~g~~~~~~~~~~~~ 193 (557)
+-+.-+++.+++..+.+++-+.++-| ++++.+|..+.=..+......+ . -++-.+....-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 34566778888999988888888888 7999877775444333322222 2 4555555443222211123333333333
Q ss_pred HHHHHHHHHHHHHHHHHH-HhHHH----HHHHccCCCcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHH
Q 008695 194 VLLFVGLACGFSMLIFTK-FFGMQ----ALSAFTGSKNV--HILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGP 266 (557)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~----l~~~~~~~~~~--~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~ 266 (557)
....+..++.+++..+.+ +.+.+ ...+...+.+. -..+.....+.+...+.....+...+....|.+-..+.-
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332222211 11111 11111111110 011223333444555555555555554444544444433
Q ss_pred HHHHHHHHHHHHHhhHHHHhc---cC--cch-----HH-HHHHHHHHHHHHHHHHHHHH---hhccccccc--ccCCCH-
Q 008695 267 LKALVVASAVNGIGDIVLCRF---LG--YGI-----AG-AAWATMASQVIAAYMMIINL---NQKGYNAFA--ISIPLP- 329 (557)
Q Consensus 267 ~~~~~~~~~~~i~l~~~li~~---~~--~Gv-----~G-aa~a~~is~~~~~~~~~~~~---~~~~~~~~~--~~~~~~- 329 (557)
...-..+..++.+.++.++.. .+ ++. .+ +.++..++++...+...... .......++ ..+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 333333333333333332221 11 111 11 23445556655544322211 111111111 111111
Q ss_pred -----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--c-ChHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhhhhhhh
Q 008695 330 -----SELLAIFELAAPVFVMMMSKVAFFTLLTYFATS--M-GTITLAAHQVMIQTLMMCT-VWGEPLAQTAQSFMPEFL 400 (557)
Q Consensus 330 -----~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~--l-g~~~vaa~~i~~~~~~l~~-~~~~~l~~a~~~~v~~~~ 400 (557)
-.-++.+++....+.+++...+..+-+.++++. + ..++-|.|++++++.+++. .+..++-.+.....++ .
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk-~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSK-L 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHH-H
Confidence 113678888899999999999999999988887 4 6799999999999998863 5666677777666654 3
Q ss_pred hcccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008695 401 YGMNR--------NLAKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAIL 472 (557)
Q Consensus 401 ~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~ 472 (557)
..+++ +.++ +.+.+...+++...+++.+........+.+..++.++..........++.+++..++.+++.
T Consensus 324 l~~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NG 402 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQ-AANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAING 402 (549)
T ss_pred hcccCchhhccchhHHH-HHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHcc
Confidence 32211 1345 66677777788777777777766666777766665444433445788999999999999999
Q ss_pred HHHHHHhhcCCchhHHH---HHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhc
Q 008695 473 SLEGTLLAGRDLKFVSF---SMSGCFSLGALALLLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 473 ~~~~~l~~~~~~~~~~~---~~~~~~~v~i~~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~ 536 (557)
+....+++..+.+-... .+.+..++-+...+++...++|..|+.+|-++.+.+|.+..++..++
T Consensus 403 i~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 403 ITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998666654443 33444455566667775426899999999999999998876666555
No 37
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.94 E-value=5.6e-08 Score=101.16 Aligned_cols=202 Identities=15% Similarity=0.127 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHhhHHHHHHHhhhhhhhhhcccccH
Q 008695 329 PSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMM-CTVWGEPLAQTAQSFMPEFLYGMNRNL 407 (557)
Q Consensus 329 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l-~~~~~~~l~~a~~~~v~~~~~g~~~~~ 407 (557)
+.+.|++.+++.|..+..........+.+.+++++|+..+|+.+++...... .+.+..++..+..+..++ ++|+ +++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQ-a~ga-~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQ-AFGA-KKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHh-hhcc-ccc
Confidence 5888999999999999999999999999999999999999999999888776 477888999999999965 9999 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhH
Q 008695 408 AKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFV 487 (557)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 487 (557)
+. .-....++..+.....++...+... .+++...+..|+++...+..+.+......+.+.....+...+++.++....
T Consensus 102 ~~-lg~~lqrs~~~l~~~~~~~~~l~~~-~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 102 TA-LGVYLQRSGIVLLVQGLPISLLILN-SEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPL 179 (473)
T ss_pred ch-hhHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHH
Confidence 99 8888998888888888887776554 588888899999999889999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 008695 488 SFSMSGCFSLGALALLLVS-GKGYGLPGCWYVLVGFQWTRFFLAFQRL 534 (557)
Q Consensus 488 ~~~~~~~~~v~i~~~~~l~-~~~~g~~Gi~~a~~~~~~~~~~~~~~~l 534 (557)
.+....+..+.+++.+++. ..++|..|..++..+.++..........
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi 227 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYA 227 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999885 6789999999999999998876654443
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.70 E-value=2.2e-06 Score=75.06 Aligned_cols=79 Identities=25% Similarity=0.218 Sum_probs=74.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 008695 237 VQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (557)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~ 316 (557)
+++++++.++..+.....+.+++.||++..+..++++.++|++++++++ +++|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999998 89999999999999999998888888877
Q ss_pred c
Q 008695 317 K 317 (557)
Q Consensus 317 ~ 317 (557)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.11 E-value=0.00037 Score=73.94 Aligned_cols=202 Identities=14% Similarity=0.104 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c-ChhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccC----
Q 008695 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ--G-SSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRD---- 184 (557)
Q Consensus 113 k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~--l-g~~~la~~~~a~~i~~~~~-~~~~~l~~~~~~~vs~~~g~~~---- 184 (557)
+++++++...+...++-.+.+--|.+++.. + +.++-|.|+++.+.-.++. .++.-+--+.-...++...+++
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 889999999999999999999999999998 5 6788999999988877663 3445566666666776654332
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 008695 185 -----KNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLG 259 (557)
Q Consensus 185 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~ 259 (557)
.++..+.+...+.+...+|+++..+....++.++.++++++ =....+...+++.+..+|+..++.+..++.++
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~--w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR--WSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc--ccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 24567778888888999998888888888999999987653 11222467788889999999999999999999
Q ss_pred cCCChHHHH---HHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008695 260 MKDSWGPLK---ALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQK 317 (557)
Q Consensus 260 ~g~~~~~~~---~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~ 317 (557)
....+.... ...+..++.+..+++++.. ++|..|..+|+.+.+.+..+..++++++.
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887665543 3555667778888988865 79999999999999999998888877653
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.06 E-value=0.0016 Score=63.01 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=113.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHh-hHHHHHHHhhhhhhhhhcccccHHHHHHHH
Q 008695 337 ELAAPVFVMMMSKVAFFTLLTYFATS-MGTITLAAHQVMIQTLMMCTVW-GEPLAQTAQSFMPEFLYGMNRNLAKLARML 414 (557)
Q Consensus 337 ~~~~p~~~~~~~~~~~~~i~~~l~~~-lg~~~vaa~~i~~~~~~l~~~~-~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~ 414 (557)
|-.......+........+...++.+ +|+++.+.++....+..+...+ ..|++++..-.++++ . ++.++ .+..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~---~-~~~~~-~~~~ 77 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEY---K-DKKEL-RSAY 77 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---h-hhHHH-HHHH
Confidence 33445555666666655666655555 5999999999999998887654 777888776666431 1 12233 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 008695 415 LKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGC 494 (557)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 494 (557)
.........+.++.......+.. +.++++... ..........++........+.+++.++.+.....++..
T Consensus 78 ~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (273)
T PF01943_consen 78 FSSVLFLLLIFSLIFLLILLIAS------FFGNPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS 148 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HcCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333333333222222 333333211 111111112246677888899999998888888888877
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 008695 495 FSLGALALLLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLSPT 538 (557)
Q Consensus 495 ~~v~i~~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~ 538 (557)
.++.......+...+.++.+..++..+...+..++..+..+|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
T PF01943_consen 149 SLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKL 192 (273)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666555555444455888888888888888877777776543
No 41
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.79 E-value=0.00015 Score=63.23 Aligned_cols=83 Identities=16% Similarity=0.084 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHhcC
Q 008695 458 LVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVSGKGYGLPGCWYVLVGFQWTRFFLAFQRLLSP 537 (557)
Q Consensus 458 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~~~~l~~~ 537 (557)
+.+++++.++.++.......+++.|+++...+.+..+.++++++++++.+. +|..|+.++..+++....++..+..+|+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~-~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR-FGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999999999999999999875 9999999999999999999999998886
Q ss_pred Cccc
Q 008695 538 TGIL 541 (557)
Q Consensus 538 ~~~~ 541 (557)
.+..
T Consensus 81 ~~~~ 84 (146)
T PF14667_consen 81 IGIK 84 (146)
T ss_pred hCCC
Confidence 5444
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.78 E-value=0.0095 Score=56.92 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=106.0
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHh-hHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008695 358 YFATSMGTITLAAHQVMIQTLMMCTVW-GEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILGVLLAIVGTSV 436 (557)
Q Consensus 358 ~l~~~lg~~~vaa~~i~~~~~~l~~~~-~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (557)
.+...+|+++.+.|+....+..+...+ ..|+.+... + . .+ ++.++ .++..+.......+.++...++....
T Consensus 10 ~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~-~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 10 LLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLV----R-S-AA-RDKQD-IRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-h-hc-cCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456999999999999988887654 444544331 2 1 12 45677 77777777766555555555443333
Q ss_pred hhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhcCCChhhHH
Q 008695 437 PWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVSGKGYGLPGCW 516 (557)
Q Consensus 437 ~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~~~~~g~~Gi~ 516 (557)
.. .+ ++++. ..++....+..++........+.+++.++.+...........+......++...+.+..++.
T Consensus 82 ~~----~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (251)
T PF13440_consen 82 AY----FF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSIL 152 (251)
T ss_pred HH----Hh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33 23 34432 33445556667778888899999999999998888887776665444444433335788888
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 008695 517 YVLVGFQWTRFFLAFQRLLS 536 (557)
Q Consensus 517 ~a~~~~~~~~~~~~~~~l~~ 536 (557)
++..++..+..+..+...++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~ 172 (251)
T PF13440_consen 153 LAFIISALLALLISFYLLRR 172 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88888888877766654443
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.78 E-value=0.0091 Score=57.28 Aligned_cols=169 Identities=8% Similarity=0.067 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcc
Q 008695 327 PLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMG---TITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGM 403 (557)
Q Consensus 327 ~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~lg---~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~ 403 (557)
+.....++++++-+|..++.....+.-.+.+.-+++-. .+.+|+|+++..+.-++..+...+.+....++-+ +
T Consensus 5 ~~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s----~ 80 (345)
T PF07260_consen 5 PSLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS----K 80 (345)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc----h
Confidence 45567889999999999999999999888887777643 3669999999999999988888888888777621 1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHhhhhcc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008695 404 NRNLAKLARMLLKSLVIIGAILGV-L-LAIVGTSVPWLFP-NIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLA 480 (557)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~i~-~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 480 (557)
++ | - ....++.....+.. . ..+...-+++.+. .++.-|+++.+.+...+.++.+.-+++++....+|++.=
T Consensus 81 -rs--r-r--~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik 154 (345)
T PF07260_consen 81 -RS--R-R--KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIK 154 (345)
T ss_pred -hh--h-H--HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 22 2 1 11222222222211 1 1112222333333 577779999999999999999999999999999998885
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHH
Q 008695 481 GRDLKFVSFSMSGCFSLGALALLLV 505 (557)
Q Consensus 481 ~~~~~~~~~~~~~~~~v~i~~~~~l 505 (557)
.+++......++...+..++...++
T Consensus 155 ~r~s~iV~~aSI~~v~~qvV~v~~l 179 (345)
T PF07260_consen 155 HRHSWIVGSASIADVIAQVVLVAIL 179 (345)
T ss_pred ccceeEeehHHHHHHHHHHHHHHHH
Confidence 5666666566665544444433333
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.65 E-value=0.073 Score=52.23 Aligned_cols=332 Identities=9% Similarity=-0.025 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhH
Q 008695 165 FMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAW 244 (557)
Q Consensus 165 ~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~ 244 (557)
+.|+....+..+|...=+||.+++..-+.-+..+....+..+..+.. ..+ ++. ...|=...+...
T Consensus 77 Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~--~~~-----si~yk~l~~~~F 141 (467)
T COG4267 77 TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVN--NQY-----SIVYKILACALF 141 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhc--Cch-----hHHHHHHHHHHH
Confidence 36788888888888888888888877666665555555554443211 111 121 122333344445
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 008695 245 PAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAI 324 (557)
Q Consensus 245 ~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~~~ 324 (557)
...+.......++.+.++.+.....-.++.++...+..++- ..++.|..++..++..+...+...++.+.- +..+.
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~f-k~~~~ 217 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYF-KSSRR 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhc-ccccc
Confidence 56677788889999999999999999999999988887765 568999999999999888777666664421 11111
Q ss_pred cCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--cChHHHH------HHHHHHHHHHHHHHhhH-----HHHHH
Q 008695 325 SIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATS--MGTITLA------AHQVMIQTLMMCTVWGE-----PLAQT 391 (557)
Q Consensus 325 ~~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~l~~~--lg~~~va------a~~i~~~~~~l~~~~~~-----~l~~a 391 (557)
..+|.-+ ..+--....+......++-.+++++.=. .|....+ -|.+..-...+...+.+ .+.+.
T Consensus 218 i~FdFL~---~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~ 294 (467)
T COG4267 218 IGFDFLL---YRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETD 294 (467)
T ss_pred cceehhh---hhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeeh
Confidence 1222211 1111223344445555555555533211 1111111 12221111111111111 11111
Q ss_pred Hhhhhhh-----------hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHH
Q 008695 392 AQSFMPE-----------FLYGMNRNLAKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVA 460 (557)
Q Consensus 392 ~~~~v~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i 460 (557)
.++..-+ .+. +++.++ .....++.+.-.+-+-...++.+.++++.+...|.-++.. +++
T Consensus 295 F~~~Yk~~y~~I~~g~tl~~I--~~~~~k-Miltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~-------l~l 364 (467)
T COG4267 295 FQENYKEYYQAIRGGGTLREI--ENNLKK-MILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY-------LDL 364 (467)
T ss_pred HHHHHHHHHHHHhCCCCHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH-------HHH
Confidence 1111100 011 123455 5556666666666677777888888898888777644432 333
Q ss_pred HHHHHHHHHHHHHHHHHHhh---cCCchhHHHHHHHHHHHHHHHHHHHhhcC--CChhhHHHHHHHHHHHHHH
Q 008695 461 YFVALIVTPAILSLEGTLLA---GRDLKFVSFSMSGCFSLGALALLLVSGKG--YGLPGCWYVLVGFQWTRFF 528 (557)
Q Consensus 461 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~v~i~~~~~l~~~~--~g~~Gi~~a~~~~~~~~~~ 528 (557)
+-.-.+...++....+.+.. -...+.....+..-...+..+.++....+ +--.|..+|..+...+++.
T Consensus 365 F~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~ 437 (467)
T COG4267 365 FYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFK 437 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHh
Confidence 33333333334444443332 34444444444445555666655544333 3344555555554444433
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.05 Score=54.75 Aligned_cols=200 Identities=16% Similarity=0.115 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cChhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccC---H
Q 008695 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ---GSSLELAALGPGTVLCDNMS-YIFMFLSIATSNLVATSLTNRD---K 185 (557)
Q Consensus 113 k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~---lg~~~la~~~~a~~i~~~~~-~~~~~l~~~~~~~vs~~~g~~~---~ 185 (557)
++..+...-..-..++-.+.+=-|.+++.- ++-.+-|.|.+..+.-.++. .++.-+--......+|...+++ .
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 566677777777777888888888888874 34445566666655544442 3334455555666666665544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChH
Q 008695 186 NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWG 265 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~ 265 (557)
++...++...+.+...+|+....+.....+.++.++++++ =....+...+++.+..+|+..++.+..+++.+.+..+.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~k--wss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSK--WSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCcc--ccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 4555667777888888887777777777888888888753 11122447789999999999999999999999887666
Q ss_pred HH---HHHHHHHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 008695 266 PL---KALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQ 316 (557)
Q Consensus 266 ~~---~~~~~~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~ 316 (557)
.- +..++..++..+++++++- .+|..|..+|..+.+.+.-+...+++++
T Consensus 397 i~~~n~~mlafSviflilsylL~~--~~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIR--WFGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 3456677888889999994 4566999999999988887777666654
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=59.51 E-value=2e+02 Score=29.08 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=76.7
Q ss_pred hHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHH
Q 008695 385 GEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVA 464 (557)
Q Consensus 385 ~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~ 464 (557)
..+++-..+=.+ +..+=+ |+.++ +.....-++.+....+..++... .+.+++. ....+.+. ...
T Consensus 77 Tgg~q~iiTRfi-SD~lF~-k~~~k-Ilpsy~Gvi~lv~~~a~~ig~~v---------f~~~~~~--si~yk~l~--~~~ 140 (467)
T COG4267 77 TGGFQLIITRFI-SDCLFE-KKQRK-ILPSYIGVILLVTLVAGVIGLIV---------FFVNNQY--SIVYKILA--CAL 140 (467)
T ss_pred hhhHHHHHHHHH-HHHHHH-HHHHH-HhHhHHHHHHHHHHHHHHHHHHh---------hhhcCch--hHHHHHHH--HHH
Confidence 334444444444 334444 45677 66666655555555555544311 1222321 12233332 223
Q ss_pred HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH
Q 008695 465 LIVTPAILSLEGTLLAGRDLKFVSFSMSGCFSLGALALLLVSGKGYGLPGCWYVLVGFQWTRFFLA 530 (557)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~i~~~~~l~~~~~g~~Gi~~a~~~~~~~~~~~~ 530 (557)
....+...+....+.+.++.+....+..+++++.+.+.++.- .+++.|.-+++.++..+..+..
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~--~~~ie~lLL~~~IGi~~i~~l~ 204 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL--KSPIEGLLLTLDIGIFIILFLL 204 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhHHHHHHHH
Confidence 344455566667777899999999999999988888776663 3689999999988877766543
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=57.60 E-value=2.3e+02 Score=29.02 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Q 008695 184 DKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAF 221 (557)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (557)
++++.+++.+++...+.....+..++.....-|+....
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~ 126 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQV 126 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999998888888888887744
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=28.58 E-value=2.5e+02 Score=21.50 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=21.5
Q ss_pred hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008695 398 EFLYGMNRNLAKLARMLLKSLVIIGAILGVLLAIVG 433 (557)
Q Consensus 398 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (557)
+..+.+ +|.++ +++..+++.+++. +++.++++.
T Consensus 45 ~~~~~~-Gd~~~-A~~aS~~Ak~~~~-ia~~~g~~~ 77 (82)
T PF04505_consen 45 RSRYAA-GDYEG-ARRASRKAKKWSI-IAIIIGIVI 77 (82)
T ss_pred HHHHHC-CCHHH-HHHHHHHhHHHHH-HHHHHHHHH
Confidence 445556 68999 9999888887753 344444433
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.06 E-value=3e+02 Score=21.02 Aligned_cols=38 Identities=11% Similarity=-0.007 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Q 008695 168 LSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFS 205 (557)
Q Consensus 168 l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 205 (557)
++.-.+..+-..+.+||++++++.-+++-.++.+..++
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 44555567777788999999999888887776544333
No 50
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=22.42 E-value=8.4e+02 Score=24.87 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 008695 407 LAKLARMLLKSLVIIGAILGVLLAIVGTSVPWLFPN 442 (557)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 442 (557)
.++ .++..+++...+.+......++.....-|+..
T Consensus 90 e~~-~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 90 ESE-MKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467 88888888888888888888777776666654
No 51
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.42 E-value=6.5e+02 Score=25.39 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=16.7
Q ss_pred CChhhHHHHHHHHHHHHHHHH
Q 008695 510 YGLPGCWYVLVGFQWTRFFLA 530 (557)
Q Consensus 510 ~g~~Gi~~a~~~~~~~~~~~~ 530 (557)
+|+-+..||++.+.....+..
T Consensus 375 ~GIgaafWGLvaG~~~~~L~~ 395 (402)
T COG3135 375 FGIGAAFWGLVAGLLVLALLN 395 (402)
T ss_pred ecccHHHHHHHHHHHHHHHHh
Confidence 788899999988877766644
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.13 E-value=4e+02 Score=24.80 Aligned_cols=40 Identities=8% Similarity=-0.030 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcc
Q 008695 182 NRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFT 222 (557)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (557)
.++++.....+..++...+++-++.++++ .++.++..+++
T Consensus 140 ~E~y~k~~k~~~~gi~aml~Vf~LF~lvm-t~g~d~m~fl~ 179 (230)
T PF03904_consen 140 HEKYQKRQKSMYKGIGAMLFVFMLFALVM-TIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hhcccchhhhh
Confidence 34555555556666655555555555544 44556666654
Done!