Query 008695
Match_columns 557
No_of_seqs 300 out of 2475
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 3.6E-46 1.2E-50 392.1 34.7 426 109-540 8-449 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3.1E-19 1.1E-23 186.7 20.9 206 110-317 235-446 (460)
3 2k1k_A Ephrin type-A receptor 25.6 98 0.0034 18.9 3.8 19 292-310 13-31 (38)
4 2l2t_A Receptor tyrosine-prote 15.3 2.4E+02 0.0082 17.9 4.4 6 312-317 32-37 (44)
5 2ks1_B Epidermal growth factor 15.3 2.2E+02 0.0076 18.0 3.8 8 310-317 31-38 (44)
6 2jwa_A Receptor tyrosine-prote 14.3 2.6E+02 0.0087 17.7 4.1 9 310-318 31-39 (44)
7 4aps_A DI-OR tripeptide H+ sym 10.8 1E+03 0.036 22.9 26.3 19 510-528 448-466 (491)
8 4aps_A DI-OR tripeptide H+ sym 9.4 1.2E+03 0.04 22.5 11.8 30 254-283 412-441 (491)
9 4hkr_A Calcium release-activat 6.7 1.2E+03 0.04 20.3 13.4 83 364-448 56-144 (214)
10 3hd7_A Vesicle-associated memb 6.5 7.3E+02 0.025 18.2 4.7 26 185-210 57-82 (91)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=3.6e-46 Score=392.08 Aligned_cols=426 Identities=15% Similarity=0.155 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Q 008695 109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV 188 (557)
Q Consensus 109 ~~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~~ 188 (557)
+++.|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+...+..+++.+..+.++|++|++|+++.
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 45569999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHH
Q 008695 189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK 268 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 268 (557)
++.+++++.+.+++++++.++ .++.+++..+++. ++++.+.+..|++++.++.++..+.....+++++.|+++.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999999998776 6788999888865 7788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHhc----cCcchHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc----cccCCCHHHHHHHHHHh
Q 008695 269 ALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAF----AISIPLPSELLAIFELA 339 (557)
Q Consensus 269 ~~~~~~~~~i~l~~~li~~----~~~Gv~Gaa~a~~is~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~il~~~ 339 (557)
.++++.++|++++++++.. |++|+.|+++|+.+++++..++.++++++++. .+. ++.+++++.+|+++++|
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 47999999999999999999888877766542 211 22356788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcccccHHHHHHHHHHHHH
Q 008695 340 APVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKLARMLLKSLV 419 (557)
Q Consensus 340 ~p~~~~~~~~~~~~~i~~~l~~~lg~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~~g~~~~~~~~~~~~~~~~~ 419 (557)
.|.+++++.+++.+.+++.+++++|++++|+|+++.++.++...+..+++++..|.++ +++|+ +|.++ +++..++++
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~-~~~g~-~~~~~-~~~~~~~~~ 321 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVG-HKLGE-QDTKG-AAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHS-SCCCT-TTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcC-CCHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 58999 68999 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH-HHH
Q 008695 420 IIGAILGVLLAIVGTSVPWLFPNIFTPDKVIIQEMHKVLVAYFVALIVTPAILSLEGTLLAGRDLKFVSFSMSGCF-SLG 498 (557)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~v~ 498 (557)
++...++++.++++.++++++..+|++|+++.+.+..+++++++..++++++.+..+.+++.||++..++.++.+. +++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888889999999999999999999999999999999999999998865 899
Q ss_pred HHHHHHHhh-----cC-CChhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 008695 499 ALALLLVSG-----KG-YGLPGCWYVLVGFQWTRFFLAFQRLLSPTGI 540 (557)
Q Consensus 499 i~~~~~l~~-----~~-~g~~Gi~~a~~~~~~~~~~~~~~~l~~~~~~ 540 (557)
+|+.+++.+ .+ +|+.|+|++..+++.+..++..++++|..+.
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 449 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ 449 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998875 34 9999999999999999999888877775443
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=3.1e-19 Score=186.73 Aligned_cols=206 Identities=16% Similarity=0.083 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Q 008695 110 NQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQ 189 (557)
Q Consensus 110 ~~~k~i~~~a~p~~~~~~~~~l~~~i~~~~ig~lg~~~la~~~~a~~i~~~~~~~~~~l~~~~~~~vs~~~g~~~~~~~~ 189 (557)
++.|++++.++|.+++++...+...+|+.+++++|++++|+++.+.++.++...+..+++.+..|.+++++|++|+++.+
T Consensus 235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~ 314 (460)
T 3mkt_A 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAA 314 (460)
T ss_dssp SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCCccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCChHHHHH
Q 008695 190 HQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKA 269 (557)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~y~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 269 (557)
+..+++..+...+++++++++.++++++..++.+ |+++.+.+..++++.+++.++..+..+..+++++.|+++.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 315 IAANVGLMTGLATACITALLTVLFREQIALLYTE--NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC--CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999999999999999999865 77889999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHhhHHHHhc----cC-cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008695 270 LVVAS-AVNGIGDIVLCRF----LG-YGIAGAAWATMASQVIAAYMMIINLNQK 317 (557)
Q Consensus 270 ~~~~~-~~~i~l~~~li~~----~~-~Gv~Gaa~a~~is~~~~~~~~~~~~~~~ 317 (557)
++++. +++++++++++.. ++ +|+.|+++|+.+++++..++..+.++|+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 9999999999965 56 9999999999999999988777666554
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.61 E-value=98 Score=18.90 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008695 292 IAGAAWATMASQVIAAYMM 310 (557)
Q Consensus 292 v~Gaa~a~~is~~~~~~~~ 310 (557)
+.|+.++.+++-.+...+.
T Consensus 13 IAGiVvG~v~gv~li~~l~ 31 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGIL 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHH
Confidence 4455555554444433333
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=15.32 E-value=2.4e+02 Score=17.87 Aligned_cols=6 Identities=17% Similarity=0.473 Sum_probs=2.5
Q ss_pred HHHhhc
Q 008695 312 INLNQK 317 (557)
Q Consensus 312 ~~~~~~ 317 (557)
++++++
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 344443
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.29 E-value=2.2e+02 Score=17.99 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=3.5
Q ss_pred HHHHHhhc
Q 008695 310 MIINLNQK 317 (557)
Q Consensus 310 ~~~~~~~~ 317 (557)
.+++++++
T Consensus 31 ~~~~~RRr 38 (44)
T 2ks1_B 31 IGLFMRRR 38 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33444444
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.34 E-value=2.6e+02 Score=17.73 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=4.1
Q ss_pred HHHHHhhcc
Q 008695 310 MIINLNQKG 318 (557)
Q Consensus 310 ~~~~~~~~~ 318 (557)
...+++|++
T Consensus 31 ~~~~~RRR~ 39 (44)
T 2jwa_A 31 FGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHC
T ss_pred HHhheehhh
Confidence 344455543
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=10.85 E-value=1e+03 Score=22.86 Aligned_cols=19 Identities=0% Similarity=-0.442 Sum_probs=8.4
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 008695 510 YGLPGCWYVLVGFQWTRFF 528 (557)
Q Consensus 510 ~g~~Gi~~a~~~~~~~~~~ 528 (557)
.+....++.......+..+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 448 KSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp SSTTHHHHHTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3444455444444333333
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=9.42 E-value=1.2e+03 Score=22.47 Aligned_cols=30 Identities=7% Similarity=-0.126 Sum_probs=12.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHhhHH
Q 008695 254 QSASLGMKDSWGPLKALVVASAVNGIGDIV 283 (557)
Q Consensus 254 ~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~ 283 (557)
........+.......+....+-..+...+
T Consensus 412 ~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 412 TKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443333
No 9
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=6.73 E-value=1.2e+03 Score=20.26 Aligned_cols=83 Identities=7% Similarity=0.129 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhh----hcc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008695 364 GTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFL----YGM--NRNLAKLARMLLKSLVIIGAILGVLLAIVGTSVP 437 (557)
Q Consensus 364 g~~~vaa~~i~~~~~~l~~~~~~~l~~a~~~~v~~~~----~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (557)
...-+.+|++...+.-.+..+..-++.-..|.+-.+. .+. +.-.+| .+........++..+++++.+.-....
T Consensus 56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r-~~~yIE~AW~fST~lGi~LFL~evall 134 (214)
T 4hkr_A 56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHER-LHWYIETAWAFSTLLGLILFLLEIAIL 134 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455778888877766666666667776667662210 011 123467 788887777777777776665544444
Q ss_pred hhcccccCCCH
Q 008695 438 WLFPNIFTPDK 448 (557)
Q Consensus 438 ~~i~~lf~~d~ 448 (557)
-+ ++++..+.
T Consensus 135 ~W-VKF~~~~~ 144 (214)
T 4hkr_A 135 CW-VKFYDLSR 144 (214)
T ss_dssp HH-HHHTTTCH
T ss_pred he-EEeecCCc
Confidence 33 35555443
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=6.49 E-value=7.3e+02 Score=18.18 Aligned_cols=26 Identities=12% Similarity=-0.096 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008695 185 KNEVQHQISVLLFVGLACGFSMLIFT 210 (557)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (557)
.+.-++..++...+.+++++++.+++
T Consensus 57 ~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 57 AKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666555544
Done!