Query 008695
Match_columns 557
No_of_seqs 300 out of 2475
Neff 9.6
Searched_HMMs 13730
Date Mon Mar 25 09:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008695.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008695hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 9.9 2.6E+02 0.019 19.1 8.7 26 328-353 66-91 (100)
2 d2yvxa3 f.57.1.1 (A:276-448) M 6.4 5.2E+02 0.038 19.7 7.9 38 173-210 60-99 (173)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.8 4.4E+02 0.032 18.1 8.6 28 327-354 71-98 (107)
4 d2uuia1 f.56.1.1 (A:2-147) Leu 3.3 4.5E+02 0.033 19.4 3.7 34 521-554 15-48 (146)
5 d2q7ra1 f.56.1.1 (A:1-139) Ara 3.0 5.7E+02 0.041 18.6 3.9 29 526-554 25-53 (139)
6 d2dlqa1 g.37.1.1 (A:93-118) GL 2.5 1.5E+02 0.011 14.3 -0.1 9 1-9 13-21 (26)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 2.5 1.3E+03 0.095 18.5 12.0 102 207-308 39-154 (261)
8 d2r6gf2 f.58.1.1 (F:261-504) M 2.2 1.1E+03 0.082 18.1 5.5 19 331-349 150-168 (244)
9 d1wyha1 g.39.1.3 (A:35-66) Fou 1.9 3.8E+02 0.028 14.1 0.9 15 9-23 3-17 (32)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 1.8 6.4E+02 0.047 12.8 2.0 26 493-518 6-31 (33)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.88 E-value=2.6e+02 Score=19.10 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008695 328 LPSELLAIFELAAPVFVMMMSKVAFF 353 (557)
Q Consensus 328 ~~~~~~~il~~~~p~~~~~~~~~~~~ 353 (557)
+.+...|+.-.-+|..+-......+.
T Consensus 66 ~~n~~LEiiWTviP~lILi~l~~pS~ 91 (100)
T d3dtub2 66 THNSPLEIAWTIVPIVILVAIGAFSL 91 (100)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888889887665544443
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=6.43 E-value=5.2e+02 Score=19.69 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=25.1
Q ss_pred HHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008695 173 SNLVATSLTNR--DKNEVQHQISVLLFVGLACGFSMLIFT 210 (557)
Q Consensus 173 ~~~vs~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (557)
.+.+-|..+.+ +.++..+.+.+=+..+++.|+.+.++.
T Consensus 60 ~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~ 99 (173)
T d2yvxa3 60 ATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLL 99 (173)
T ss_dssp HHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655544 556677777777777887777776654
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.76 E-value=4.4e+02 Score=18.14 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 008695 327 PLPSELLAIFELAAPVFVMMMSKVAFFT 354 (557)
Q Consensus 327 ~~~~~~~~il~~~~p~~~~~~~~~~~~~ 354 (557)
.+.+...|+.-.-+|..+-......+..
T Consensus 71 ~~~n~~lEi~WTviP~lIL~~laipSl~ 98 (107)
T d3ehbb2 71 FTHNTPIEVIWTLVPVLILVAIGAFSLP 98 (107)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888776665554443
No 4
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.31 E-value=4.5e+02 Score=19.37 Aligned_cols=34 Identities=9% Similarity=-0.005 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccccHHHHHHh
Q 008695 521 GFQWTRFFLAFQRLLSPTGILYSENVSKHQLEKL 554 (557)
Q Consensus 521 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 554 (557)
+.+...+...+.+.|++.+..+-......++|+.
T Consensus 15 ~i~~~~~s~~V~~~R~k~kv~~p~~~g~~~fera 48 (146)
T d2uuia1 15 VLLQAYFSLQVISARRAFRVSPPLTTGPPEFERV 48 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 3333334445667777666544222223345544
No 5
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.98 E-value=5.7e+02 Score=18.58 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCcccccccccHHHHHHh
Q 008695 526 RFFLAFQRLLSPTGILYSENVSKHQLEKL 554 (557)
Q Consensus 526 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 554 (557)
.+...+.+.|++.+..+.+.....++||.
T Consensus 25 ~ls~~Vg~aR~k~~v~~p~~~g~~~f~ra 53 (139)
T d2q7ra1 25 FFAHKVEHESRTQNGRSFQRTGTLAFERV 53 (139)
T ss_dssp HHHHHHHHHHHHSCCSSCCSCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCHHHHHH
Confidence 34445566677666655443223345554
No 6
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.55 E-value=1.5e+02 Score=14.32 Aligned_cols=9 Identities=44% Similarity=0.637 Sum_probs=4.4
Q ss_pred Ccccchhhc
Q 008695 1 MQVKTFANH 9 (557)
Q Consensus 1 ~~~~~~~~~ 9 (557)
||-|.+-||
T Consensus 13 mqkkdlqsh 21 (26)
T d2dlqa1 13 MQKKDLQSH 21 (26)
T ss_dssp SSHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444445555
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.46 E-value=1.3e+03 Score=18.49 Aligned_cols=102 Identities=14% Similarity=0.055 Sum_probs=52.9
Q ss_pred HHHHHHhHHHHHHHccCCCccccHHHHHH------------HH-HHHHhhHHHHHHHHHHHHHHhhc-CCChHHHHHHHH
Q 008695 207 LIFTKFFGMQALSAFTGSKNVHILPAANK------------YV-QIRGLAWPAVLTGWVAQSASLGM-KDSWGPLKALVV 272 (557)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~------------y~-~~~~~~~~~~~l~~~~~~~l~~~-g~~~~~~~~~~~ 272 (557)
+++..+...-++.+.+.++.++..+.... .+ .+-+-...+.....+.++++.|. ++.+...+..-+
T Consensus 39 ~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv 118 (261)
T d3cx5c2 39 CLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGV 118 (261)
T ss_dssp HHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhH
Confidence 33344556666777776543222222211 11 12222333445556677766555 445666565544
Q ss_pred HHHHHHHhhHHHHhccCcchHHHHHHHHHHHHHHHH
Q 008695 273 ASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAY 308 (557)
Q Consensus 273 ~~~~~i~l~~~li~~~~~Gv~Gaa~a~~is~~~~~~ 308 (557)
...+.....-+.=+.+.+|-.+.+.+++++++...+
T Consensus 119 ~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~l~~~i 154 (261)
T d3cx5c2 119 IIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAI 154 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCBHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHhhhhcCCCcchhhHHHHHHHHHHhc
Confidence 433333333333334567888888888888876544
No 8
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.24 E-value=1.1e+03 Score=18.06 Aligned_cols=19 Identities=11% Similarity=0.446 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 008695 331 ELLAIFELAAPVFVMMMSK 349 (557)
Q Consensus 331 ~~~~il~~~~p~~~~~~~~ 349 (557)
.++.+.++-+|..-..+..
T Consensus 150 ~~~~f~~I~lPl~~p~i~~ 168 (244)
T d2r6gf2 150 PFQNFFKITLPLLIKPLTP 168 (244)
T ss_dssp SHHHHHHTTGGGTHHHHHH
T ss_pred ccCCeEEEEccccHHHHHH
Confidence 4556667777765554443
No 9
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.89 E-value=3.8e+02 Score=14.13 Aligned_cols=15 Identities=7% Similarity=0.064 Sum_probs=9.7
Q ss_pred ccccCCCCCcccccc
Q 008695 9 HFVSSPNSRLKLLSQ 23 (557)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (557)
|.+.||-.+..|-+.
T Consensus 3 ~~C~qPIGtkSFip~ 17 (32)
T d1wyha1 3 SGCEQPLGSRSFVPD 17 (32)
T ss_dssp TTTCCBTTTSCEEEE
T ss_pred ccccCcccccccccC
Confidence 556777777666554
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=1.77 E-value=6.4e+02 Score=12.83 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCChhhHHHH
Q 008695 493 GCFSLGALALLLVSGKGYGLPGCWYV 518 (557)
Q Consensus 493 ~~~~v~i~~~~~l~~~~~g~~Gi~~a 518 (557)
....+..++...+..+.+|+..+.++
T Consensus 6 gal~vi~il~l~ilvfw~gv~avf~a 31 (33)
T d1xmec1 6 GALAVILVLTLTILVFWLGVYAVFFA 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc
Done!