Query 008696
Match_columns 557
No_of_seqs 155 out of 177
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 15:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03468 XS: XS domain; Inter 100.0 1.9E-46 4.2E-51 337.0 4.6 114 113-227 1-116 (116)
2 PF03469 XH: XH domain; Inter 99.9 5.2E-24 1.1E-28 195.1 5.5 56 501-556 1-56 (132)
3 PF03470 zf-XS: XS zinc finger 99.8 2.6E-19 5.6E-24 134.4 2.9 43 42-84 1-43 (43)
4 PF07888 CALCOCO1: Calcium bin 97.1 0.25 5.3E-06 55.8 25.4 34 395-428 263-296 (546)
5 TIGR02169 SMC_prok_A chromosom 96.9 1.4 3E-05 52.7 31.8 7 141-147 118-124 (1164)
6 PF07888 CALCOCO1: Calcium bin 96.7 1.5 3.3E-05 49.7 29.8 68 232-299 150-217 (546)
7 TIGR02169 SMC_prok_A chromosom 96.5 2.8 6E-05 50.2 31.5 6 59-64 43-48 (1164)
8 COG1196 Smc Chromosome segrega 96.4 3.7 8E-05 50.5 31.8 50 436-485 442-491 (1163)
9 KOG0161 Myosin class II heavy 96.4 2.2 4.7E-05 54.8 29.3 165 210-374 782-975 (1930)
10 KOG4643 Uncharacterized coiled 96.4 2.1 4.5E-05 51.4 26.9 172 240-411 279-501 (1195)
11 KOG0161 Myosin class II heavy 96.4 5 0.00011 51.7 31.9 42 416-461 1042-1083(1930)
12 PF10174 Cast: RIM-binding pro 96.1 2.4 5.2E-05 50.1 25.9 215 255-483 401-635 (775)
13 PF09726 Macoilin: Transmembra 96.0 0.86 1.9E-05 53.2 21.3 45 258-302 458-502 (697)
14 PRK11637 AmiB activator; Provi 95.6 3.1 6.6E-05 45.4 22.9 45 314-358 170-214 (428)
15 PF12128 DUF3584: Protein of u 95.6 8.8 0.00019 47.5 29.6 228 252-485 280-521 (1201)
16 KOG0996 Structural maintenance 95.5 8.7 0.00019 47.1 28.6 65 250-314 303-367 (1293)
17 KOG0250 DNA repair protein RAD 95.4 9.3 0.0002 46.5 27.3 108 436-550 867-1017(1074)
18 COG1196 Smc Chromosome segrega 95.4 10 0.00022 46.8 31.1 12 526-537 552-563 (1163)
19 KOG0996 Structural maintenance 95.3 10 0.00022 46.6 27.6 95 390-487 471-568 (1293)
20 PRK11637 AmiB activator; Provi 95.3 5.8 0.00012 43.3 28.1 48 382-429 168-215 (428)
21 PF15066 CAGE1: Cancer-associa 95.2 1.4 3E-05 48.9 18.4 62 334-395 445-508 (527)
22 KOG0612 Rho-associated, coiled 95.1 12 0.00025 46.2 26.8 189 272-466 492-693 (1317)
23 COG1382 GimC Prefoldin, chaper 94.7 0.7 1.5E-05 42.7 12.2 93 394-491 9-114 (119)
24 PF15619 Lebercilin: Ciliary p 94.6 5.2 0.00011 39.8 21.9 136 288-472 57-193 (194)
25 PF08317 Spc7: Spc7 kinetochor 94.6 2.9 6.4E-05 44.2 18.4 109 290-430 182-291 (325)
26 TIGR02168 SMC_prok_B chromosom 94.4 15 0.00032 43.9 32.3 30 171-201 140-171 (1179)
27 KOG0976 Rho/Rac1-interacting s 94.0 17 0.00037 43.2 27.7 131 316-457 258-399 (1265)
28 KOG4674 Uncharacterized conser 93.8 28 0.00061 44.9 28.9 169 252-424 1242-1424(1822)
29 KOG0964 Structural maintenance 93.7 14 0.0003 44.7 22.8 42 440-485 432-473 (1200)
30 PHA02562 46 endonuclease subun 93.7 14 0.00031 41.1 27.0 25 246-270 174-198 (562)
31 PRK02224 chromosome segregatio 93.1 23 0.0005 41.9 28.0 13 395-407 346-358 (880)
32 PRK09039 hypothetical protein; 92.8 16 0.00034 39.3 20.5 28 474-501 189-216 (343)
33 KOG0250 DNA repair protein RAD 92.7 30 0.00066 42.3 29.9 68 249-316 224-305 (1074)
34 KOG0579 Ste20-like serine/thre 92.6 26 0.00056 41.3 25.4 91 371-467 929-1022(1187)
35 TIGR00606 rad50 rad50. This fa 92.4 38 0.00082 42.5 30.5 39 442-480 986-1024(1311)
36 TIGR00606 rad50 rad50. This fa 92.3 38 0.00083 42.4 26.5 58 396-457 869-926 (1311)
37 KOG1853 LIS1-interacting prote 92.2 16 0.00036 38.0 19.8 144 292-460 20-167 (333)
38 KOG0239 Kinesin (KAR3 subfamil 92.2 10 0.00022 44.4 19.1 203 252-501 113-319 (670)
39 KOG0933 Structural maintenance 91.9 37 0.0008 41.4 24.4 46 396-445 887-932 (1174)
40 PF05911 DUF869: Plant protein 91.8 34 0.00074 40.8 23.9 90 248-341 80-172 (769)
41 KOG0982 Centrosomal protein Nu 91.7 25 0.00054 39.1 21.3 174 239-418 204-394 (502)
42 KOG0994 Extracellular matrix g 91.4 45 0.00097 41.4 24.6 61 226-286 1479-1544(1758)
43 KOG0971 Microtubule-associated 91.3 41 0.00088 40.7 25.2 104 263-377 261-377 (1243)
44 KOG0933 Structural maintenance 90.1 55 0.0012 40.1 24.6 107 251-357 242-348 (1174)
45 KOG4674 Uncharacterized conser 90.0 72 0.0016 41.4 27.7 74 392-475 1308-1381(1822)
46 KOG0612 Rho-associated, coiled 88.0 81 0.0018 39.4 25.9 12 210-221 519-530 (1317)
47 KOG1937 Uncharacterized conser 88.0 20 0.00043 40.1 15.8 90 397-493 306-396 (521)
48 KOG0980 Actin-binding protein 87.9 71 0.0015 38.6 25.9 15 17-31 162-176 (980)
49 PF05605 zf-Di19: Drought indu 87.7 0.29 6.4E-06 38.4 1.5 24 38-65 1-24 (54)
50 COG1340 Uncharacterized archae 87.7 42 0.00091 35.7 21.4 94 394-491 134-240 (294)
51 KOG4572 Predicted DNA-binding 87.7 54 0.0012 39.3 19.6 99 259-357 921-1042(1424)
52 PRK04863 mukB cell division pr 87.1 1E+02 0.0022 39.6 34.5 41 421-461 420-463 (1486)
53 PF05483 SCP-1: Synaptonemal c 86.6 74 0.0016 37.5 27.1 141 269-409 480-633 (786)
54 PF05701 WEMBL: Weak chloropla 86.6 63 0.0014 36.6 31.3 95 250-345 169-263 (522)
55 smart00787 Spc7 Spc7 kinetocho 86.3 50 0.0011 35.2 18.1 21 410-430 248-268 (312)
56 PF15070 GOLGA2L5: Putative go 86.3 74 0.0016 37.1 23.2 34 245-278 28-61 (617)
57 KOG1029 Endocytic adaptor prot 85.4 91 0.002 37.4 28.2 20 438-457 547-566 (1118)
58 PF05701 WEMBL: Weak chloropla 85.4 72 0.0016 36.2 29.9 39 390-428 217-262 (522)
59 PF13851 GAS: Growth-arrest sp 84.5 20 0.00042 35.8 12.7 87 250-343 83-169 (201)
60 PF00076 RRM_1: RNA recognitio 84.3 2.4 5.2E-05 32.8 5.1 54 123-185 1-57 (70)
61 KOG0163 Myosin class VI heavy 83.8 45 0.00097 39.8 16.5 11 210-220 822-832 (1259)
62 KOG1029 Endocytic adaptor prot 83.8 1.1E+02 0.0023 36.8 23.5 25 510-534 581-610 (1118)
63 KOG0971 Microtubule-associated 83.6 1.2E+02 0.0025 37.1 27.1 57 339-409 386-442 (1243)
64 PRK03918 chromosome segregatio 82.2 1.1E+02 0.0025 36.1 30.9 7 85-91 41-47 (880)
65 KOG0249 LAR-interacting protei 82.0 1.1E+02 0.0024 36.4 18.7 115 215-335 62-181 (916)
66 PF05010 TACC: Transforming ac 81.6 63 0.0014 32.7 19.5 128 239-370 52-182 (207)
67 KOG0978 E3 ubiquitin ligase in 81.5 1.2E+02 0.0026 35.9 26.5 100 326-432 515-625 (698)
68 PF00261 Tropomyosin: Tropomyo 80.8 67 0.0015 32.5 23.3 36 252-287 35-70 (237)
69 PF12128 DUF3584: Protein of u 80.2 1.7E+02 0.0036 36.7 30.2 8 209-216 581-588 (1201)
70 PF09726 Macoilin: Transmembra 80.0 1.4E+02 0.0029 35.5 21.1 16 394-409 548-563 (697)
71 PF14259 RRM_6: RNA recognitio 78.6 4.8 0.0001 31.8 5.0 57 123-188 1-60 (70)
72 KOG0995 Centromere-associated 78.3 1.4E+02 0.003 34.6 28.7 51 226-279 204-254 (581)
73 KOG0946 ER-Golgi vesicle-tethe 78.1 1.7E+02 0.0036 35.4 23.4 49 226-274 630-678 (970)
74 PF10174 Cast: RIM-binding pro 78.1 1.6E+02 0.0035 35.3 26.6 212 236-459 319-533 (775)
75 KOG0239 Kinesin (KAR3 subfamil 78.1 67 0.0015 37.8 15.9 26 405-430 297-322 (670)
76 PF15272 BBP1_C: Spindle pole 78.0 81 0.0018 31.8 18.6 133 247-408 13-149 (196)
77 PF05667 DUF812: Protein of un 77.3 1.5E+02 0.0033 34.5 23.6 38 252-289 327-364 (594)
78 KOG0962 DNA repair protein RAD 77.2 2.1E+02 0.0046 36.2 25.3 73 350-429 827-899 (1294)
79 KOG0577 Serine/threonine prote 77.2 1.6E+02 0.0035 34.8 23.1 68 236-303 465-538 (948)
80 COG1579 Zn-ribbon protein, pos 76.9 97 0.0021 32.1 20.5 73 344-423 84-157 (239)
81 KOG0018 Structural maintenance 76.9 2E+02 0.0043 35.7 24.7 116 211-336 629-754 (1141)
82 PF00038 Filament: Intermediat 76.5 98 0.0021 32.0 21.9 63 390-459 215-281 (312)
83 PRK00409 recombination and DNA 75.7 57 0.0012 38.9 14.8 78 313-403 519-596 (782)
84 PF08702 Fib_alpha: Fibrinogen 75.7 46 0.001 31.7 11.5 63 253-315 57-120 (146)
85 PRK04778 septation ring format 75.6 1.5E+02 0.0034 33.8 29.0 105 381-485 314-428 (569)
86 COG5185 HEC1 Protein involved 75.4 1.5E+02 0.0033 33.7 25.8 143 241-402 252-414 (622)
87 PF10186 Atg14: UV radiation r 75.1 98 0.0021 31.3 17.5 23 389-411 124-146 (302)
88 KOG4807 F-actin binding protei 74.2 1.5E+02 0.0033 33.0 20.0 78 391-482 463-540 (593)
89 PHA02562 46 endonuclease subun 73.0 1.6E+02 0.0035 32.8 26.7 36 390-425 312-347 (562)
90 PRK12704 phosphodiesterase; Pr 72.9 1.8E+02 0.0039 33.2 22.9 54 370-423 147-204 (520)
91 smart00362 RRM_2 RNA recogniti 72.8 8 0.00017 29.0 4.7 46 123-176 2-49 (72)
92 KOG4673 Transcription factor T 72.5 2.1E+02 0.0046 34.0 26.3 33 242-274 342-374 (961)
93 TIGR03319 YmdA_YtgF conserved 71.1 1.3E+02 0.0028 34.3 15.5 7 480-486 184-190 (514)
94 PRK04778 septation ring format 70.1 2.1E+02 0.0045 32.8 26.6 82 407-490 447-532 (569)
95 KOG1853 LIS1-interacting prote 68.4 1.6E+02 0.0035 31.0 19.6 40 384-423 133-172 (333)
96 KOG0804 Cytoplasmic Zn-finger 68.4 2.1E+02 0.0045 32.4 15.7 23 217-239 278-300 (493)
97 TIGR01069 mutS2 MutS2 family p 67.8 97 0.0021 37.0 14.2 34 324-357 518-551 (771)
98 COG0419 SbcC ATPase involved i 67.6 2.8E+02 0.0062 33.5 29.2 32 400-431 680-712 (908)
99 PF00261 Tropomyosin: Tropomyo 67.4 1.5E+02 0.0032 30.1 21.1 46 437-482 173-218 (237)
100 KOG1854 Mitochondrial inner me 67.0 2.6E+02 0.0057 32.9 20.2 119 242-360 154-297 (657)
101 PF10498 IFT57: Intra-flagella 67.0 1.9E+02 0.0041 31.6 15.2 42 43-92 16-57 (359)
102 PF04880 NUDE_C: NUDE protein, 66.9 8.9 0.00019 37.5 4.7 28 395-422 11-38 (166)
103 PF15254 CCDC14: Coiled-coil d 66.8 2.2E+02 0.0047 34.3 16.2 93 378-489 456-549 (861)
104 TIGR01069 mutS2 MutS2 family p 66.8 1.5E+02 0.0032 35.5 15.5 50 311-360 512-561 (771)
105 PRK09039 hypothetical protein; 66.6 1.9E+02 0.0041 31.1 17.9 49 250-298 57-105 (343)
106 TIGR03319 YmdA_YtgF conserved 66.3 2.4E+02 0.0052 32.2 22.8 55 370-424 141-199 (514)
107 PRK00409 recombination and DNA 65.0 1.5E+02 0.0033 35.5 15.1 72 243-318 510-581 (782)
108 PTZ00121 MAEBL; Provisional 64.4 4.3E+02 0.0093 34.4 25.2 70 287-360 1572-1641(2084)
109 PF15070 GOLGA2L5: Putative go 64.3 2.9E+02 0.0063 32.4 23.8 29 281-309 4-32 (617)
110 KOG0995 Centromere-associated 63.6 2.9E+02 0.0063 32.1 28.6 93 253-345 266-367 (581)
111 KOG0979 Structural maintenance 63.1 3.8E+02 0.0081 33.3 26.6 93 173-291 119-212 (1072)
112 PF05010 TACC: Transforming ac 62.9 1.8E+02 0.0039 29.5 25.7 84 251-334 7-93 (207)
113 PRK09343 prefoldin subunit bet 62.5 1.3E+02 0.0028 27.7 12.1 80 407-491 27-115 (121)
114 PF05622 HOOK: HOOK protein; 62.4 2.5 5.4E-05 49.2 0.0 65 397-464 536-600 (713)
115 KOG4643 Uncharacterized coiled 62.2 3.9E+02 0.0085 33.2 28.8 12 209-220 285-296 (1195)
116 PF09731 Mitofilin: Mitochondr 61.6 2.9E+02 0.0062 31.4 21.8 25 391-415 378-402 (582)
117 PF05557 MAD: Mitotic checkpoi 61.3 2.7 5.9E-05 49.0 0.0 93 391-483 288-393 (722)
118 PF07106 TBPIP: Tat binding pr 60.9 56 0.0012 31.2 8.9 78 395-483 76-153 (169)
119 PRK00106 hypothetical protein; 60.3 3.2E+02 0.0069 31.5 22.7 53 370-422 162-218 (535)
120 smart00030 CLb CLUSTERIN Beta 59.9 41 0.00088 34.0 7.8 37 378-414 44-80 (206)
121 PF04012 PspA_IM30: PspA/IM30 59.6 1.9E+02 0.004 28.6 23.8 42 422-463 147-188 (221)
122 PF10481 CENP-F_N: Cenp-F N-te 58.6 1.4E+02 0.0031 31.6 11.8 100 354-460 30-129 (307)
123 KOG0579 Ste20-like serine/thre 58.3 4E+02 0.0087 32.1 19.4 150 297-455 803-957 (1187)
124 TIGR01661 ELAV_HUD_SF ELAV/HuD 58.3 17 0.00036 37.8 5.2 51 122-180 271-325 (352)
125 KOG0977 Nuclear envelope prote 58.3 3.5E+02 0.0076 31.4 20.2 184 280-484 203-386 (546)
126 PF06637 PV-1: PV-1 protein (P 57.9 3E+02 0.0066 30.6 14.5 108 249-356 281-388 (442)
127 PF03962 Mnd1: Mnd1 family; I 57.6 2E+02 0.0044 28.4 13.0 69 397-468 68-138 (188)
128 PLN03229 acetyl-coenzyme A car 56.9 4.2E+02 0.0091 31.9 21.3 59 397-455 648-710 (762)
129 PF05262 Borrelia_P83: Borreli 56.9 3.5E+02 0.0076 30.9 16.5 21 185-205 108-128 (489)
130 KOG2412 Nuclear-export-signal 56.7 3.7E+02 0.0081 31.2 17.7 47 311-359 198-246 (591)
131 PF13894 zf-C2H2_4: C2H2-type 56.6 6.9 0.00015 24.3 1.3 20 40-62 1-20 (24)
132 COG2433 Uncharacterized conser 56.1 83 0.0018 36.6 10.4 37 391-430 474-510 (652)
133 KOG0976 Rho/Rac1-interacting s 55.7 4.6E+02 0.01 32.0 24.6 18 186-203 46-63 (1265)
134 PF15619 Lebercilin: Ciliary p 54.1 2.4E+02 0.0051 28.2 17.0 27 253-279 61-87 (194)
135 COG2433 Uncharacterized conser 54.1 1.7E+02 0.0036 34.3 12.3 61 381-459 440-500 (652)
136 KOG0977 Nuclear envelope prote 54.0 4.1E+02 0.0088 30.8 27.5 52 390-441 175-230 (546)
137 PRK04863 mukB cell division pr 54.0 6.2E+02 0.013 32.9 27.6 27 437-463 446-472 (1486)
138 PLN03120 nucleic acid binding 53.2 22 0.00047 37.2 4.9 59 122-189 6-65 (260)
139 PF10168 Nup88: Nuclear pore c 53.1 4.7E+02 0.01 31.3 17.9 9 81-89 398-406 (717)
140 PF12325 TMF_TATA_bd: TATA ele 52.9 1.4E+02 0.003 27.7 9.7 46 411-467 71-116 (120)
141 COG1340 Uncharacterized archae 52.4 3.2E+02 0.007 29.2 27.1 225 249-489 30-275 (294)
142 PF13863 DUF4200: Domain of un 52.4 1.7E+02 0.0038 26.1 14.0 26 404-429 70-95 (126)
143 KOG0163 Myosin class VI heavy 51.7 5.3E+02 0.011 31.4 19.5 47 305-351 891-937 (1259)
144 KOG0964 Structural maintenance 51.6 5.8E+02 0.012 31.9 24.6 117 213-345 631-755 (1200)
145 PLN03121 nucleic acid binding 51.4 25 0.00054 36.4 5.0 61 120-189 5-66 (243)
146 PRK12704 phosphodiesterase; Pr 51.4 4.2E+02 0.0092 30.3 20.7 12 539-550 274-285 (520)
147 PRK01156 chromosome segregatio 51.2 5.1E+02 0.011 31.1 30.4 15 326-340 261-275 (895)
148 PTZ00332 paraflagellar rod pro 51.1 4.4E+02 0.0095 30.4 20.5 135 282-452 261-417 (589)
149 PF15236 CCDC66: Coiled-coil d 51.1 2.5E+02 0.0053 27.5 15.5 98 214-311 15-117 (157)
150 PF04111 APG6: Autophagy prote 50.6 2.6E+02 0.0057 29.7 12.7 13 498-510 153-165 (314)
151 COG0419 SbcC ATPase involved i 50.1 5.4E+02 0.012 31.2 30.8 35 388-422 421-455 (908)
152 cd07651 F-BAR_PombeCdc15_like 49.6 2.8E+02 0.0062 27.7 18.7 102 311-425 108-214 (236)
153 PTZ00464 SNF-7-like protein; P 49.0 3E+02 0.0065 27.9 14.4 25 326-350 16-40 (211)
154 PF08317 Spc7: Spc7 kinetochor 48.1 3.7E+02 0.0079 28.6 22.1 31 325-355 132-162 (325)
155 KOG2129 Uncharacterized conser 47.9 4.5E+02 0.0097 29.7 13.9 90 240-329 167-272 (552)
156 KOG0018 Structural maintenance 47.8 6.7E+02 0.014 31.5 24.4 76 407-486 401-476 (1141)
157 PF05667 DUF812: Protein of un 47.8 5.2E+02 0.011 30.2 27.3 50 249-298 331-380 (594)
158 COG1842 PspA Phage shock prote 47.0 3.3E+02 0.0072 27.8 18.6 42 288-329 23-64 (225)
159 PF10234 Cluap1: Clusterin-ass 46.7 3.8E+02 0.0082 28.3 13.0 120 232-360 114-236 (267)
160 KOG0963 Transcription factor/C 46.6 5.5E+02 0.012 30.2 25.9 21 391-411 310-330 (629)
161 PF11559 ADIP: Afadin- and alp 45.5 2.6E+02 0.0056 26.1 13.9 99 296-425 52-150 (151)
162 PF08702 Fib_alpha: Fibrinogen 45.1 2.8E+02 0.0061 26.4 14.9 65 241-305 24-91 (146)
163 COG4942 Membrane-bound metallo 44.9 5E+02 0.011 29.2 22.4 34 414-451 216-249 (420)
164 PF11068 YlqD: YlqD protein; 44.8 1E+02 0.0022 29.1 7.5 86 320-428 19-104 (131)
165 PRK10884 SH3 domain-containing 43.2 3E+02 0.0065 27.7 11.1 23 312-334 134-156 (206)
166 PRK12705 hypothetical protein; 43.0 5.7E+02 0.012 29.4 20.9 63 326-390 93-155 (508)
167 PRK06569 F0F1 ATP synthase sub 43.0 3.2E+02 0.007 26.5 14.8 44 342-398 88-131 (155)
168 KOG4360 Uncharacterized coiled 42.9 5.9E+02 0.013 29.5 15.4 23 460-482 281-303 (596)
169 PF00096 zf-C2H2: Zinc finger, 42.7 13 0.00028 23.6 0.9 20 40-62 1-20 (23)
170 PF05483 SCP-1: Synaptonemal c 41.7 6.9E+02 0.015 30.0 29.8 36 252-287 239-274 (786)
171 PF04508 Pox_A_type_inc: Viral 41.3 26 0.00057 23.7 2.2 19 391-409 1-19 (23)
172 COG4026 Uncharacterized protei 41.1 3.2E+02 0.0069 28.5 10.8 64 386-449 144-207 (290)
173 PLN03134 glycine-rich RNA-bind 40.2 56 0.0012 30.6 5.2 55 122-185 36-94 (144)
174 PF10168 Nup88: Nuclear pore c 40.1 7.2E+02 0.016 29.7 17.8 66 267-332 551-622 (717)
175 PF07989 Microtub_assoc: Micro 39.9 61 0.0013 27.6 4.8 42 304-345 30-71 (75)
176 COG1842 PspA Phage shock prote 39.7 4.3E+02 0.0094 27.0 22.3 47 254-300 18-64 (225)
177 PF03670 UPF0184: Uncharacteri 39.3 1.1E+02 0.0024 26.9 6.3 49 254-302 27-75 (83)
178 TIGR01005 eps_transp_fam exopo 39.3 5.6E+02 0.012 30.1 14.2 59 253-311 288-346 (754)
179 smart00400 ZnF_CHCC zinc finge 39.1 54 0.0012 25.7 4.1 35 27-65 10-45 (55)
180 PF04065 Not3: Not1 N-terminal 39.1 4.6E+02 0.0099 27.1 17.4 142 258-424 6-152 (233)
181 PF04810 zf-Sec23_Sec24: Sec23 39.0 21 0.00046 26.6 1.8 15 33-47 17-32 (40)
182 PLN03188 kinesin-12 family pro 38.6 6.7E+02 0.015 32.1 14.8 48 251-298 1077-1124(1320)
183 COG1579 Zn-ribbon protein, pos 38.3 4.8E+02 0.01 27.1 19.5 14 321-334 35-48 (239)
184 PRK00398 rpoP DNA-directed RNA 38.2 22 0.00047 27.0 1.7 17 32-48 13-30 (46)
185 TIGR02894 DNA_bind_RsfA transc 38.1 4E+02 0.0087 26.2 11.9 41 437-484 115-155 (161)
186 PF14354 Lar_restr_allev: Rest 37.6 15 0.00032 29.2 0.7 11 39-50 3-13 (61)
187 PLN02678 seryl-tRNA synthetase 37.6 2.3E+02 0.0051 31.8 10.3 55 433-505 71-133 (448)
188 PF05769 DUF837: Protein of un 37.5 4.2E+02 0.009 26.2 18.5 39 296-334 45-94 (181)
189 PF01576 Myosin_tail_1: Myosin 37.5 11 0.00024 45.2 0.0 78 280-357 104-188 (859)
190 PF10458 Val_tRNA-synt_C: Valy 37.5 1.8E+02 0.0038 23.8 7.1 53 398-453 4-59 (66)
191 KOG1103 Predicted coiled-coil 37.5 6.1E+02 0.013 28.1 19.2 198 251-459 84-292 (561)
192 KOG2264 Exostosin EXT1L [Signa 36.8 2.4E+02 0.0051 33.0 10.0 46 381-429 76-121 (907)
193 PRK10803 tol-pal system protei 36.6 95 0.0021 32.1 6.6 27 400-429 56-82 (263)
194 TIGR03185 DNA_S_dndD DNA sulfu 36.4 7.4E+02 0.016 28.8 25.7 17 528-547 562-578 (650)
195 KOG1937 Uncharacterized conser 36.2 7.1E+02 0.015 28.5 20.0 47 311-357 360-411 (521)
196 KOG1151 Tousled-like protein k 35.7 6.6E+02 0.014 29.1 13.0 98 315-421 331-445 (775)
197 PF06637 PV-1: PV-1 protein (P 35.5 6.7E+02 0.015 28.0 14.3 28 396-426 354-381 (442)
198 PTZ00491 major vault protein; 35.2 6.2E+02 0.013 31.0 13.5 28 260-287 626-653 (850)
199 PF11608 Limkain-b1: Limkain b 35.1 33 0.00072 30.4 2.5 46 122-176 4-49 (90)
200 TIGR01649 hnRNP-L_PTB hnRNP-L/ 34.5 64 0.0014 35.9 5.3 69 117-194 389-463 (481)
201 KOG0533 RRM motif-containing p 34.4 53 0.0011 34.0 4.3 66 121-195 84-152 (243)
202 PRK13182 racA polar chromosome 34.4 2.2E+02 0.0048 28.0 8.4 34 376-409 110-143 (175)
203 PF10805 DUF2730: Protein of u 34.1 1.3E+02 0.0027 27.1 6.2 43 427-469 58-101 (106)
204 PF09787 Golgin_A5: Golgin sub 34.1 7.4E+02 0.016 28.1 23.8 53 308-360 205-260 (511)
205 KOG0247 Kinesin-like protein [ 34.1 9.2E+02 0.02 29.2 15.7 66 390-461 580-647 (809)
206 PF04849 HAP1_N: HAP1 N-termin 33.9 6.3E+02 0.014 27.2 22.9 40 388-430 231-270 (306)
207 PF07111 HCR: Alpha helical co 33.8 9.1E+02 0.02 29.0 22.0 163 258-466 61-223 (739)
208 PF09738 DUF2051: Double stran 33.7 6.2E+02 0.013 27.1 15.9 28 266-293 83-110 (302)
209 PRK01156 chromosome segregatio 33.5 9.1E+02 0.02 29.0 31.6 35 251-285 467-501 (895)
210 PHA02540 61 DNA primase; Provi 33.4 26 0.00056 37.9 2.0 57 39-95 27-91 (337)
211 PRK14143 heat shock protein Gr 33.2 5.7E+02 0.012 26.5 11.6 31 330-360 80-110 (238)
212 smart00360 RRM RNA recognition 33.2 64 0.0014 23.7 3.7 45 139-184 7-55 (71)
213 KOG1265 Phospholipase C [Lipid 33.1 1E+03 0.023 29.5 19.6 23 24-46 791-819 (1189)
214 COG4985 ABC-type phosphate tra 33.0 2.7E+02 0.0059 29.1 9.0 15 208-222 140-154 (289)
215 smart00531 TFIIE Transcription 32.3 23 0.00051 33.3 1.3 13 36-48 120-132 (147)
216 cd07623 BAR_SNX1_2 The Bin/Amp 32.1 2.6E+02 0.0056 28.1 8.7 60 209-272 83-142 (224)
217 PF14662 CCDC155: Coiled-coil 31.9 5.5E+02 0.012 25.9 22.7 61 299-360 50-113 (193)
218 PF04094 DUF390: Protein of un 31.2 1E+03 0.022 28.8 17.3 111 237-348 412-529 (828)
219 PF10146 zf-C4H2: Zinc finger- 31.1 6E+02 0.013 26.1 13.7 20 292-311 32-51 (230)
220 KOG0962 DNA repair protein RAD 31.0 1.3E+03 0.027 29.8 25.0 63 261-323 886-951 (1294)
221 TIGR03655 anti_R_Lar restricti 31.0 22 0.00048 27.9 0.8 10 41-50 3-12 (53)
222 PF04880 NUDE_C: NUDE protein, 30.9 58 0.0013 31.9 3.8 11 269-279 2-12 (166)
223 PF12344 UvrB: Ultra-violet re 30.8 60 0.0013 25.3 3.0 24 277-300 4-30 (44)
224 PF14817 HAUS5: HAUS augmin-li 30.4 5.8E+02 0.012 30.2 12.2 78 242-319 75-158 (632)
225 PRK00732 fliE flagellar hook-b 30.3 2.8E+02 0.0061 25.1 7.7 69 226-305 33-101 (102)
226 PF12329 TMF_DNA_bd: TATA elem 30.2 3.4E+02 0.0073 23.0 9.7 34 282-315 2-35 (74)
227 PF15358 TSKS: Testis-specific 30.0 3E+02 0.0066 30.9 9.2 54 236-289 108-161 (558)
228 PF10058 DUF2296: Predicted in 29.9 28 0.0006 27.9 1.2 18 29-46 32-51 (54)
229 TIGR00219 mreC rod shape-deter 29.7 1.2E+02 0.0025 31.9 6.0 42 389-430 71-113 (283)
230 PF05622 HOOK: HOOK protein; 29.6 18 0.00038 42.4 0.0 124 299-428 274-404 (713)
231 KOG0946 ER-Golgi vesicle-tethe 29.5 1.1E+03 0.025 28.9 21.6 172 287-480 652-839 (970)
232 PF05129 Elf1: Transcription e 29.5 22 0.00047 30.7 0.5 13 36-48 19-31 (81)
233 PF03804 DUF325: Viral domain 29.4 35 0.00076 28.7 1.7 23 495-517 33-55 (71)
234 PRK10698 phage shock protein P 29.0 6.2E+02 0.013 25.6 23.2 38 422-459 148-185 (222)
235 PRK12728 fliE flagellar hook-b 29.0 2.6E+02 0.0057 25.2 7.3 38 267-305 64-101 (102)
236 PRK10884 SH3 domain-containing 28.9 6.2E+02 0.013 25.5 12.2 17 199-217 66-82 (206)
237 PF00769 ERM: Ezrin/radixin/mo 28.9 6.5E+02 0.014 25.8 16.7 66 294-359 14-85 (246)
238 PF13909 zf-H2C2_5: C2H2-type 28.8 28 0.0006 22.5 0.8 19 40-62 1-19 (24)
239 PF09787 Golgin_A5: Golgin sub 28.7 9E+02 0.02 27.4 26.2 64 413-478 367-430 (511)
240 KOG4593 Mitotic checkpoint pro 28.4 1.1E+03 0.024 28.3 22.9 188 244-465 156-344 (716)
241 PF04012 PspA_IM30: PspA/IM30 28.2 5.9E+02 0.013 25.1 17.6 51 289-339 23-73 (221)
242 COG3883 Uncharacterized protei 28.2 7.4E+02 0.016 26.2 19.3 55 253-307 52-113 (265)
243 PF05266 DUF724: Protein of un 28.0 6.1E+02 0.013 25.2 10.5 16 413-428 136-151 (190)
244 PF13912 zf-C2H2_6: C2H2-type 28.0 29 0.00063 22.8 0.8 22 39-63 1-22 (27)
245 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.0 4.8E+02 0.01 24.0 15.8 41 319-359 68-108 (132)
246 TIGR02977 phageshock_pspA phag 27.9 6.2E+02 0.013 25.3 16.9 125 287-473 22-146 (219)
247 COG5533 UBP5 Ubiquitin C-termi 27.9 36 0.00078 36.7 1.9 28 16-48 266-293 (415)
248 PF12711 Kinesin-relat_1: Kine 27.9 4.3E+02 0.0093 23.4 8.9 56 267-326 3-60 (86)
249 PRK05431 seryl-tRNA synthetase 27.9 5.1E+02 0.011 28.7 10.9 55 434-506 67-129 (425)
250 PF10046 BLOC1_2: Biogenesis o 27.6 4.3E+02 0.0093 23.3 13.2 89 252-342 6-94 (99)
251 TIGR01661 ELAV_HUD_SF ELAV/HuD 27.6 1E+02 0.0022 32.0 5.1 47 122-176 5-55 (352)
252 COG0466 Lon ATP-dependent Lon 27.5 1.2E+03 0.025 28.4 15.1 31 400-430 207-241 (782)
253 PF07464 ApoLp-III: Apolipopho 27.3 1E+02 0.0022 29.8 4.7 79 250-331 42-120 (155)
254 PF12072 DUF3552: Domain of un 27.2 6.2E+02 0.013 25.0 17.9 34 322-355 83-116 (201)
255 TIGR03185 DNA_S_dndD DNA sulfu 27.1 1E+03 0.023 27.6 28.2 18 408-425 398-415 (650)
256 PRK03907 fliE flagellar hook-b 27.0 2.9E+02 0.0064 24.8 7.2 37 268-305 60-96 (97)
257 KOG0963 Transcription factor/C 27.0 1.1E+03 0.024 27.9 24.7 49 434-491 311-359 (629)
258 cd07647 F-BAR_PSTPIP The F-BAR 26.6 6.7E+02 0.015 25.2 17.2 115 307-427 103-219 (239)
259 COG0724 RNA-binding proteins ( 26.6 1.1E+02 0.0025 28.5 4.9 60 120-187 115-178 (306)
260 PF00038 Filament: Intermediat 26.5 7.2E+02 0.016 25.6 26.4 168 290-486 45-220 (312)
261 PF10473 CENP-F_leu_zip: Leuci 26.4 5.8E+02 0.013 24.4 18.2 130 274-408 3-136 (140)
262 PF01576 Myosin_tail_1: Myosin 26.3 22 0.00048 42.7 0.0 71 409-483 322-392 (859)
263 PF03127 GAT: GAT domain; Int 25.9 3.2E+02 0.0068 23.9 7.2 71 406-481 2-84 (100)
264 COG0576 GrpE Molecular chapero 25.9 4.1E+02 0.009 26.4 8.8 55 456-517 93-156 (193)
265 PF00301 Rubredoxin: Rubredoxi 25.8 28 0.00061 27.2 0.5 14 37-50 32-45 (47)
266 PF09738 DUF2051: Double stran 25.6 7.6E+02 0.016 26.5 11.2 66 391-467 87-153 (302)
267 TIGR00205 fliE flagellar hook- 25.4 3.6E+02 0.0077 24.6 7.6 39 266-305 70-108 (108)
268 PF07899 Frigida: Frigida-like 25.4 1.5E+02 0.0033 31.3 6.0 44 366-409 234-281 (290)
269 cd00590 RRM RRM (RNA recogniti 25.3 1.6E+02 0.0035 21.8 4.7 44 140-184 11-57 (74)
270 PF13893 RRM_5: RNA recognitio 25.2 98 0.0021 23.5 3.5 29 145-175 1-30 (56)
271 PF05557 MAD: Mitotic checkpoi 25.2 4.9E+02 0.011 30.7 10.7 15 413-427 571-585 (722)
272 PF12252 SidE: Dot/Icm substra 24.7 1.5E+03 0.033 28.8 15.7 37 388-424 1275-1314(1439)
273 PHA00616 hypothetical protein 24.6 24 0.00052 27.4 -0.1 21 40-63 2-22 (44)
274 PF13913 zf-C2HC_2: zinc-finge 24.6 42 0.00091 22.6 1.1 20 39-62 2-21 (25)
275 PF14932 HAUS-augmin3: HAUS au 24.4 7.9E+02 0.017 25.3 12.1 41 474-515 134-178 (256)
276 TIGR03545 conserved hypothetic 24.4 7.5E+02 0.016 28.7 11.6 31 409-439 238-268 (555)
277 PF01093 Clusterin: Clusterin; 24.3 2.7E+02 0.0058 31.4 7.8 36 378-413 38-73 (436)
278 KOG0993 Rab5 GTPase effector R 24.1 1.1E+03 0.024 26.8 15.2 93 214-308 19-116 (542)
279 KOG2606 OTU (ovarian tumor)-li 24.0 3E+02 0.0066 29.5 7.7 30 391-420 45-74 (302)
280 TIGR02231 conserved hypothetic 24.0 3.4E+02 0.0074 30.5 8.8 26 460-485 144-169 (525)
281 PF12718 Tropomyosin_1: Tropom 23.9 6.2E+02 0.014 23.9 12.2 104 380-484 10-120 (143)
282 TIGR00414 serS seryl-tRNA synt 23.8 6.6E+02 0.014 27.8 10.8 53 435-505 71-131 (418)
283 COG5019 CDC3 Septin family pro 23.7 3.9E+02 0.0085 29.5 8.7 55 288-342 313-367 (373)
284 PF10805 DUF2730: Protein of u 23.6 1.9E+02 0.0041 25.9 5.5 34 396-429 47-86 (106)
285 COG5185 HEC1 Protein involved 23.4 1.2E+03 0.026 27.0 16.1 26 476-501 404-429 (622)
286 PF07246 Phlebovirus_NSM: Phle 23.1 4.4E+02 0.0095 27.9 8.6 84 391-486 151-234 (264)
287 PF02370 M: M protein repeat; 23.0 98 0.0021 20.7 2.5 19 409-427 2-20 (21)
288 PF10481 CENP-F_N: Cenp-F N-te 23.0 9.6E+02 0.021 25.7 15.9 106 320-436 21-137 (307)
289 PF09728 Taxilin: Myosin-like 22.7 9.5E+02 0.021 25.6 27.4 98 290-404 105-205 (309)
290 KOG1962 B-cell receptor-associ 22.6 4.2E+02 0.0091 27.2 8.2 26 320-345 154-179 (216)
291 PF15023 DUF4523: Protein of u 22.5 1.1E+02 0.0023 29.9 3.7 58 120-186 84-145 (166)
292 KOG3214 Uncharacterized Zn rib 22.5 36 0.00077 31.0 0.6 15 36-50 20-34 (109)
293 PF06428 Sec2p: GDP/GTP exchan 22.3 2.8E+02 0.006 25.0 6.2 77 345-427 4-84 (100)
294 KOG4212 RNA-binding protein hn 21.9 1.2E+02 0.0026 34.2 4.5 63 123-194 47-113 (608)
295 PF09727 CortBP2: Cortactin-bi 21.8 8.3E+02 0.018 24.6 14.8 42 312-353 136-177 (192)
296 PF12760 Zn_Tnp_IS1595: Transp 21.8 31 0.00068 26.2 0.1 20 34-56 13-33 (46)
297 PF03904 DUF334: Domain of unk 21.6 9.2E+02 0.02 25.0 13.6 20 315-334 118-137 (230)
298 TIGR01642 U2AF_lg U2 snRNP aux 21.5 1.4E+02 0.0031 32.8 5.1 46 122-175 297-346 (509)
299 KOG4571 Activating transcripti 21.4 3.4E+02 0.0074 29.0 7.5 44 382-425 239-286 (294)
300 PF03645 Tctex-1: Tctex-1 fami 21.4 2E+02 0.0044 24.8 5.1 34 518-551 19-53 (101)
301 PF02994 Transposase_22: L1 tr 21.2 1.8E+02 0.0039 31.6 5.7 30 436-465 140-169 (370)
302 KOG4360 Uncharacterized coiled 21.1 1.3E+03 0.029 26.8 14.4 105 250-354 195-301 (596)
303 PF08312 cwf21: cwf21 domain; 21.1 2E+02 0.0044 22.4 4.4 40 409-452 5-44 (46)
304 COG5665 NOT5 CCR4-NOT transcri 21.0 6.7E+02 0.014 28.1 9.7 77 363-439 67-167 (548)
305 PRK13729 conjugal transfer pil 20.8 3E+02 0.0066 31.3 7.4 14 501-514 190-203 (475)
306 PF02049 FliE: Flagellar hook- 20.8 3.7E+02 0.0081 23.5 6.6 38 267-305 58-95 (96)
307 KOG3260 Calcyclin-binding prot 20.7 1.1E+02 0.0023 30.8 3.5 42 412-453 175-216 (224)
308 PF04059 RRM_2: RNA recognitio 20.7 2.5E+02 0.0055 25.1 5.6 58 122-191 3-66 (97)
309 PF04111 APG6: Autophagy prote 20.7 1E+03 0.023 25.3 12.3 13 542-554 263-277 (314)
310 PRK10929 putative mechanosensi 20.6 1.8E+03 0.039 28.0 25.1 104 309-412 257-361 (1109)
311 PF13465 zf-H2C2_2: Zinc-finge 20.6 53 0.0011 22.1 1.0 11 36-46 11-21 (26)
312 KOG0804 Cytoplasmic Zn-finger 20.5 1.3E+03 0.028 26.4 16.3 24 409-432 429-453 (493)
313 PF06705 SF-assemblin: SF-asse 20.5 9E+02 0.019 24.5 23.4 26 414-439 174-199 (247)
314 PF03114 BAR: BAR domain; Int 20.5 7.2E+02 0.016 23.4 17.7 31 314-344 128-158 (229)
315 PF12072 DUF3552: Domain of un 20.3 8.4E+02 0.018 24.1 17.8 21 370-390 143-163 (201)
316 PF07851 TMPIT: TMPIT-like pro 20.3 8.1E+02 0.017 26.7 10.2 49 413-461 41-89 (330)
317 PRK00790 fliE flagellar hook-b 20.2 3.5E+02 0.0076 24.8 6.4 69 226-305 40-108 (109)
No 1
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=1.9e-46 Score=337.00 Aligned_cols=114 Identities=46% Similarity=0.845 Sum_probs=87.0
Q ss_pred CCceeeecceEEEEecccccc-CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhh
Q 008696 113 QEDLYVWPWMGIIVNIVMETK-DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAF 190 (557)
Q Consensus 113 ~de~iVWPwmgIi~Ni~~e~~-dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~F 190 (557)
+|++|||||||||+||+|+++ +|+++|+|++.|++ |+.|+|.+|+||||+.||+|+|||+|++||+||+||++||+||
T Consensus 1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence 589999999999999999986 99999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCch
Q 008696 191 DADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPI 227 (557)
Q Consensus 191 e~~~~GRkdW~~~~~~~~~~LYGW~AradD~~~~~~i 227 (557)
+.+||||+||.+++.. +++||||||++|||++.|||
T Consensus 81 ~~~~~Gr~dW~~~~~~-~~~lYGw~A~~dD~~~~~~i 116 (116)
T PF03468_consen 81 EAQGHGRKDWERRRGG-GSQLYGWVARADDYNSPGPI 116 (116)
T ss_dssp HHTT-SHHHHT-SSS----S-EEEE-BHHHHHSSSHH
T ss_pred HHcCCCHHHHhhccCC-CCceeeeeCchhhccCCCCC
Confidence 9999999999998765 89999999999999999986
No 2
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=99.89 E-value=5.2e-24 Score=195.10 Aligned_cols=56 Identities=61% Similarity=1.209 Sum_probs=54.8
Q ss_pred cccCCCCChhHHHHHhhcCCchhHHhHHHHHHHHHHHhhcCCCCcccEEEeecCcc
Q 008696 501 KRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGNY 556 (557)
Q Consensus 501 KrmGeld~kpF~~ack~k~~~~~~~~~a~~lcs~Wq~~l~dp~WhPFkvv~v~g~~ 556 (557)
||||+||.+||+.||++||++++|+++|++|||+||++|+||+|||||||+++|+.
T Consensus 1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~ 56 (132)
T PF03469_consen 1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKE 56 (132)
T ss_pred CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcc
Confidence 89999999999999999999999999999999999999999999999999999975
No 3
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.76 E-value=2.6e-19 Score=134.44 Aligned_cols=43 Identities=77% Similarity=1.188 Sum_probs=41.7
Q ss_pred ccCCCCCCcCccccHHHHhhhccCCCCCCCcChHHHHhHHHHH
Q 008696 42 CPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALA 84 (557)
Q Consensus 42 CP~C~gkkk~~y~~~~LLqHA~gvg~sss~r~~k~ka~H~aLa 84 (557)
||||+|++|++|.|+||||||+|||+||+.|+++++|+|||||
T Consensus 1 CP~C~~kkk~~Y~~~~LlqHA~gvg~~~~~r~~k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQHASGVGASSSRRSAKEKANHRALA 43 (43)
T ss_pred CCCCCCCCCcceehhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence 9999999999999999999999999998889999999999996
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.07 E-value=0.25 Score=55.82 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHh
Q 008696 395 EALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMK 428 (557)
Q Consensus 395 ~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmk 428 (557)
.+-..+.+++..+...+.++.|+..|+.+|..+.
T Consensus 263 rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 263 RLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444555666556566666666666766666553
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.94 E-value=1.4 Score=52.75 Aligned_cols=7 Identities=0% Similarity=-0.363 Sum_probs=3.7
Q ss_pred ChhhHhh
Q 008696 141 SGYWLKR 147 (557)
Q Consensus 141 s~~~L~~ 147 (557)
+...+.+
T Consensus 118 ~~~~~~~ 124 (1164)
T TIGR02169 118 RLSEIHD 124 (1164)
T ss_pred cHHHHHH
Confidence 4455555
No 6
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.74 E-value=1.5 Score=49.66 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=44.5
Q ss_pred hhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHH
Q 008696 232 RQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVE 299 (557)
Q Consensus 232 rk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yne 299 (557)
+.+.+|.................|..|...+....+....|+..+..++.+...+-+|++.|...+.+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555556666677777777777777788888888888888877777766554443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.55 E-value=2.8 Score=50.24 Aligned_cols=6 Identities=33% Similarity=0.445 Sum_probs=2.4
Q ss_pred Hhhhcc
Q 008696 59 LQHASG 64 (557)
Q Consensus 59 LqHA~g 64 (557)
+..+.|
T Consensus 43 i~~~l~ 48 (1164)
T TIGR02169 43 ILFALG 48 (1164)
T ss_pred HHHHhc
Confidence 334443
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.44 E-value=3.7 Score=50.49 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHH
Q 008696 436 AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (557)
Q Consensus 436 ~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI 485 (557)
.+....+..+.+.+++-.+.+..++.--..+-.+.+..+++++.++..+.
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 491 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666777777778888888876543
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.42 E-value=2.2 Score=54.78 Aligned_cols=165 Identities=24% Similarity=0.267 Sum_probs=77.0
Q ss_pred ceeeeecccCCC------CCCCchhhhhhhccCCCCHHHHH-----HHh--hhhHhHHHHHHHhHHHhhhhhHHHHHHHh
Q 008696 210 RIYGWFARADDN------TSEGPIGEYLRQEGKLRTVSDIV-----QED--AQSKIHVVAHLASKIDMKNEDLSELQCKF 276 (557)
Q Consensus 210 ~LYGW~AradD~------~~~~~iG~~Lrk~gdLKTi~ei~-----~E~--~rk~~~lv~~L~n~i~~kn~~l~elE~k~ 276 (557)
..=||+||.+=. .+--+|.+..|.+..||+-+=.- ... ..++...+.....+|......++..|.+.
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~ 861 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKR 861 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344666665433 33347888888887888644211 000 01233333344444444455555555555
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-------HHHHHhhHHHHHHHhhhHHHHHHH
Q 008696 277 NETTMSLSRMLEEKDRLHYAFVEETRKMQR---------LARDNVRRIL-------EEQEKLSCELETKKKKLDSWSKQL 340 (557)
Q Consensus 277 ~e~t~sL~r~meEk~~l~~~yneE~~kmQ~---------~a~~~~~ri~-------~e~ekl~~eLe~k~~eL~~r~k~L 340 (557)
++......++..++-.|......|...... .-+...++++ .+.+.....|+.++++++..+..|
T Consensus 862 ~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l 941 (1930)
T KOG0161|consen 862 KELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQEL 941 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544443333333222211 1111122222 222333444555555555555555
Q ss_pred HHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHH
Q 008696 341 NKREALTERERQKLDADRQQNDLRNNSLQLASME 374 (557)
Q Consensus 341 ~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~E 374 (557)
.+.-..-+..+.+++.|+.....+...|.-....
T Consensus 942 ~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 942 KEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544445555555555555444444444444333
No 10
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.38 E-value=2.1 Score=51.35 Aligned_cols=172 Identities=20% Similarity=0.194 Sum_probs=104.5
Q ss_pred HHHHHHHhhhhHhHHH--HHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHH------------------------
Q 008696 240 VSDIVQEDAQSKIHVV--AHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRL------------------------ 293 (557)
Q Consensus 240 i~ei~~E~~rk~~~lv--~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l------------------------ 293 (557)
-.+|..++.++....- +.|..+|-.-++.+..|+.-....--.+..+|+|+-.|
T Consensus 279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~e 358 (1195)
T KOG4643|consen 279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELE 358 (1195)
T ss_pred HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhh
Confidence 3456666665544444 56666777777777777666665555666666554311
Q ss_pred -----------HH--HHHHHHHH---------HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Q 008696 294 -----------HY--AFVEETRK---------MQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERER 351 (557)
Q Consensus 294 -----------~~--~yneE~~k---------mQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er 351 (557)
-. +|.-+|.+ .|....+....=.-+-++...-|+-+-+.|+-|-.++.++-++-+...
T Consensus 359 n~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~ 438 (1195)
T KOG4643|consen 359 NESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLE 438 (1195)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22222221 111111222222222233333344444555555566667778888888
Q ss_pred HhhHHHHHhhhhhhchhHhhHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 008696 352 QKLDADRQQNDLRNNSLQLASMEQKK---ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQ 411 (557)
Q Consensus 352 ~kL~~e~~kn~~~~~~l~lA~~Eq~k---ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ 411 (557)
++|..|.++--..++++..+.-+|++ ++..++.+...+..+-++++++|..|-+-|+..+
T Consensus 439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~ 501 (1195)
T KOG4643|consen 439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRD 501 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88988888877888888888888844 5666777888888888899988888877776654
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.36 E-value=5 Score=51.68 Aligned_cols=42 Identities=24% Similarity=0.484 Sum_probs=24.0
Q ss_pred hHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 008696 416 EIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMES 461 (557)
Q Consensus 416 Ei~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~ 461 (557)
.+..|.|.|..+. +...+++.+..+|...|..++.++..|.+
T Consensus 1042 ~~rkle~el~~~~----e~~~~~~~~~~el~~~l~kke~El~~l~~ 1083 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQ----ESIEELKKQKEELDNQLKKKESELSQLQS 1083 (1930)
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555553322 23344666777777777777777765543
No 12
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.10 E-value=2.4 Score=50.07 Aligned_cols=215 Identities=25% Similarity=0.358 Sum_probs=111.2
Q ss_pred HHHHHhHHHhhhhhHHHHHHHhh---------hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008696 255 VAHLASKIDMKNEDLSELQCKFN---------ETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCE 325 (557)
Q Consensus 255 v~~L~n~i~~kn~~l~elE~k~~---------e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~e 325 (557)
+.+|..++..+.+.+..+..++. ....+|.....+++++....++....-.+ .-.++.+.++.+
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~-------e~~Eele~~~~e 473 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK-------ERQEELETYQKE 473 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 45566666666666666666666 34455666666666666665543221111 111222333333
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHH---HhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHH--HHHHHHHHH
Q 008696 326 LETKKKKLDSWSKQLNKREALTERER---QKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKR--EKEEALSKI 400 (557)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~er---~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkr--Eke~~~~ki 400 (557)
+..-+.++++=.++|.+.+.+-+.=+ -+|..-..| +.+.+.-+.++=.+..+.+-+|....++ ...++..+|
T Consensus 474 ~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K---~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~ 550 (775)
T PF10174_consen 474 LKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEK---KDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRI 550 (775)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccch---hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchH
Confidence 33333333333333333332222111 122211222 2334444555555566666677666655 234556677
Q ss_pred HHHHHHhhHHh----hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHH--Hhhcc
Q 008696 401 LQLEKQLDAKQ----KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK--ERQSN 474 (557)
Q Consensus 401 ~~LekqL~~kQ----~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~k--er~sn 474 (557)
..||+.....- +-..||.+|.+-|.=+--- -...-++|..|..+|.+----+......++++-+. +|++.
T Consensus 551 ~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~E----K~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~ 626 (775)
T PF10174_consen 551 QQLEQEVTRYREESEKAQAEVERLLDILREAENE----KNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRA 626 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhh
Confidence 77777654332 2246677776644332221 11233677888888776666665555566665444 88889
Q ss_pred HHHHHHHHH
Q 008696 475 DELQEARRE 483 (557)
Q Consensus 475 dELqeARke 483 (557)
.+|.+|+++
T Consensus 627 elleea~Re 635 (775)
T PF10174_consen 627 ELLEEALRE 635 (775)
T ss_pred HHHHHHHhh
Confidence 999999883
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.95 E-value=0.86 Score=53.16 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 008696 258 LASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETR 302 (557)
Q Consensus 258 L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~ 302 (557)
++..|....+.-++|+.+++..+.+.+.-+.-...|...+.+|.+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577777777788888888877777666555555555555544
No 14
>PRK11637 AmiB activator; Provisional
Probab=95.62 E-value=3.1 Score=45.44 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHH
Q 008696 314 RILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADR 358 (557)
Q Consensus 314 ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~ 358 (557)
.++++....+.+|++++.+|+..-.+|..+.+..+.++..|+.++
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k 214 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQAR 214 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555444443
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.58 E-value=8.8 Score=47.50 Aligned_cols=228 Identities=18% Similarity=0.234 Sum_probs=102.5
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK 331 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~ 331 (557)
.+....+...+..-+..+..++..+++....++.-...-..-+...+.++..+++.-..+...=+.+-...-..|..-..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~ 359 (1201)
T PF12128_consen 280 EQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRN 359 (1201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHH
Confidence 33334444444444444444444444444444444444444455555556666665555543334444444445555555
Q ss_pred hhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Q 008696 332 KLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDA-- 409 (557)
Q Consensus 332 eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~-- 409 (557)
+++....+++-+......-..+....+++-....+. ...... +. .-.+-+...+.++...+.+..|+.++.+
T Consensus 360 ~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~-~~~~~~---~~--~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~ 433 (1201)
T PF12128_consen 360 ELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR-QQERLQ---AQ--QDEIREEKAERREQIEEEYQALEQELRQQS 433 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444444444433332111111 011111 11 1122233333345555555555555542
Q ss_pred ---HhhhhhhHHHhhhhHHHHhhcCC--CCcHHHHHHH-------HHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHH
Q 008696 410 ---KQKLEMEIEDLKGKLEVMKHLGD--EDDAAVQKKM-------KEMNDELESKIDDLDEMESLNKTLIAKERQSNDEL 477 (557)
Q Consensus 410 ---kQ~LELEi~qLkg~L~Vmkhm~~--~~d~~~~~k~-------~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndEL 477 (557)
.+.+.-+-.+++..|..+++.-. .-.++....+ +...+.+......+..++.--+.+-..-.+.+++|
T Consensus 434 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 513 (1201)
T PF12128_consen 434 QEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEEL 513 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333444444444444321 1233334333 34444444444444444444445555555666777
Q ss_pred HHHHHHHH
Q 008696 478 QEARRELI 485 (557)
Q Consensus 478 qeARkelI 485 (557)
+.+|.++-
T Consensus 514 ~~~~~~~~ 521 (1201)
T PF12128_consen 514 RQARRELE 521 (1201)
T ss_pred HHHHHHHH
Confidence 77766643
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=8.7 Score=47.05 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=40.4
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRR 314 (557)
Q Consensus 250 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~r 314 (557)
..+.-+.+|...-+-.-.+-+..+..+.++..++..+.++...++..-.++-++++..+.+..++
T Consensus 303 ~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k 367 (1293)
T KOG0996|consen 303 PKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEK 367 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Confidence 44555666665555554555566666666666777777777777766666666666555555444
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.38 E-value=9.3 Score=46.46 Aligned_cols=108 Identities=25% Similarity=0.390 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHhHHH--HHHHHhhccHHHHHHHHHHHHhhhhh----------------------
Q 008696 436 AAVQKKMKEMNDELESKIDDLDEMESLNKT--LIAKERQSNDELQEARRELIQGLSDL---------------------- 491 (557)
Q Consensus 436 ~~~~~k~~~l~~~L~ek~~el~~~e~~nq~--Li~ker~sndELqeARkelI~gl~~~---------------------- 491 (557)
+++++.|..|+...+..++.+.+++.+... +-.++.+--+++..+=+++|+.+.+.
T Consensus 867 ~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~ 946 (1074)
T KOG0250|consen 867 AEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEE 946 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999999999999999988 55566666777777755555543211
Q ss_pred ----------cC--------CcccccccccCCCCChhHHHHHhhcCC-chhHHhHHHHHHHHHHHhhcCCCCcccEEE
Q 008696 492 ----------IG--------ARTNIGVKRLGEIDPKPFQDACKNKFP-LEEAQVEASTLCSLWQENLKATEWHPFKII 550 (557)
Q Consensus 492 ----------~~--------~~~~IgiKrmGeld~kpF~~ack~k~~-~~~~~~~a~~lcs~Wq~~l~dp~WhPFkvv 550 (557)
+| ..-.|+||+-+.=+.+|+.+. +-++ .|--=.+++.|-|+|. +.=+||++.
T Consensus 947 F~~~l~~R~~sg~l~~~~e~ktl~i~v~~~~~~~~~~v~d~--~gLSGGERSFsTv~lllsLW~-----~me~Pfr~L 1017 (1074)
T KOG0250|consen 947 FDALLGKRGFSGKLEFDHEEKTLSISVKLPTSGNEKAVRDT--RGLSGGERSFSTVCLLLSLWE-----VMECPFRAL 1017 (1074)
T ss_pred HHHHhhccccCcceeecccccccchhhccCCCCcccccccc--cccCcccchHHHHHHHHHHhH-----hhcCchhhh
Confidence 11 233488877766666443332 1122 2333355667889997 456888764
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.36 E-value=10 Score=46.79 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHH
Q 008696 526 VEASTLCSLWQE 537 (557)
Q Consensus 526 ~~a~~lcs~Wq~ 537 (557)
..|......|-.
T Consensus 552 ~~a~~~i~~lk~ 563 (1163)
T COG1196 552 EVAKKAIEFLKE 563 (1163)
T ss_pred HHHHHHHHHHhh
Confidence 345556666654
No 19
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.34 E-value=10 Score=46.58 Aligned_cols=95 Identities=25% Similarity=0.295 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCC---CCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHH
Q 008696 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGD---EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~---~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~L 466 (557)
+++.+.+.++|..+|+.|.. +.+.+.+.+|.++|-..--+ .=.....+++++++..|.....+++...+.-..|
T Consensus 471 ~~~t~~~~~e~~~~ekel~~---~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~ 547 (1293)
T KOG0996|consen 471 KQETEGIREEIEKLEKELMP---LLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDL 547 (1293)
T ss_pred hhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777763 45566666666666443100 0012445677777777777666666554544555
Q ss_pred HHHHhhccHHHHHHHHHHHHh
Q 008696 467 IAKERQSNDELQEARRELIQG 487 (557)
Q Consensus 467 i~ker~sndELqeARkelI~g 487 (557)
-..--.-++|+-++.|+|=.-
T Consensus 548 k~~l~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 548 KEELPSLKQELKEKEKELPKL 568 (1293)
T ss_pred HHhhhhHHHHHHHHHHhHHHH
Confidence 555555677888888887665
No 20
>PRK11637 AmiB activator; Provisional
Probab=95.26 E-value=5.8 Score=43.33 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 008696 382 VLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 382 vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkh 429 (557)
...+++..+..+.++.....+|+.++...+.+.-+.++-+..|+..+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888888888888888888888888876664
No 21
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.25 E-value=1.4 Score=48.88 Aligned_cols=62 Identities=26% Similarity=0.306 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhHHHHHhhHHHHHhhh-hhhchhHhhHHHHHHhhHHHHHHH-HHHHHHHHH
Q 008696 334 DSWSKQLNKREALTERERQKLDADRQQND-LRNNSLQLASMEQKKADENVLRLV-EEQKREKEE 395 (557)
Q Consensus 334 ~~r~k~L~k~~~~~~~er~kL~~e~~kn~-~~~~~l~lA~~Eq~kade~vlkLv-e~hkrEke~ 395 (557)
-+.|-++++.=-+.+.+-..|+..+-+-. .-.+.|++...|....+-..|.|- |.||+||+.
T Consensus 445 vsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 445 VSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666666553322 234777777777777777777764 456666654
No 22
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.12 E-value=12 Score=46.19 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=105.3
Q ss_pred HHHHhhhhhHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhH
Q 008696 272 LQCKFNETTMSLSRMLEEKDR---LHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTE 348 (557)
Q Consensus 272 lE~k~~e~t~sL~r~meEk~~---l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~ 348 (557)
++..+++....+...-+++.. +...+.+|+...| .-.++.+-..+...+++.+|+.....+-.......++-....
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q-~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~ 570 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ-KKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSK 570 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhh
Confidence 345666666666655555553 4677888888884 445555666666677888888776666555555555555554
Q ss_pred HHHHhhHHHHHhhhh---hhchhHhhHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHHhhhhhhHH
Q 008696 349 RERQKLDADRQQNDL---RNNSLQLASMEQKKADENVLRLVEE-------QKREKEEALSKILQLEKQLDAKQKLEMEIE 418 (557)
Q Consensus 349 ~er~kL~~e~~kn~~---~~~~l~lA~~Eq~kade~vlkLve~-------hkrEke~~~~ki~~LekqL~~kQ~LELEi~ 418 (557)
.=-..++++.+.+.. .+..|+.+...--+....+.-.++. +..+..++-+.|.-|+.-+.+++..++-++
T Consensus 571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 444455555553332 2333333322222222223333333 345667778888888888888888777777
Q ss_pred HhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHH
Q 008696 419 DLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (557)
Q Consensus 419 qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~L 466 (557)
+|+-... .+..+-+-+..+ ..+.-+|+...++++.+.+-|+.|
T Consensus 651 el~r~~~--e~~~~~ek~~~e---~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 651 ELKRENQ--ERISDSEKEALE---IKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554332 222111111111 234555666666666666666665
No 23
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.7 Score=42.72 Aligned_cols=93 Identities=33% Similarity=0.492 Sum_probs=70.2
Q ss_pred HHHHHHHHHH----HHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHH---------HHHHHHHHhHHhhhHHHH
Q 008696 394 EEALSKILQL----EKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKM---------KEMNDELESKIDDLDEME 460 (557)
Q Consensus 394 e~~~~ki~~L----ekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~---------~~l~~~L~ek~~el~~~e 460 (557)
++.+++..+| +..+.+||+||.++...+-.|+=..-++ +|..+++++ +++.++|+++.+. ++
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~--eD~~vYk~VG~llvk~~k~~~~~eL~er~E~---Le 83 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD--EDAPVYKKVGNLLVKVSKEEAVDELEERKET---LE 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccHHHHHhhhHHhhhhHHHHHHHHHHHHHH---HH
Confidence 3444555444 4455689999999999998888777764 466888776 4555666555554 46
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhhhh
Q 008696 461 SLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (557)
Q Consensus 461 ~~nq~Li~ker~sndELqeARkelI~gl~~~ 491 (557)
---.||-..|+....+|++-+.+|++-|..-
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7889999999999999999999999888754
No 24
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.65 E-value=5.2 Score=39.76 Aligned_cols=136 Identities=29% Similarity=0.350 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHh-hhHHHHHhhHHHHHhhhhhhc
Q 008696 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA-LTERERQKLDADRQQNDLRNN 366 (557)
Q Consensus 288 eEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~-~~~~er~kL~~e~~kn~~~~~ 366 (557)
.+--++...|++|++-++..-|....++-+-..+++ +.+..+..+....+.|.++.. .+=.+|.+|...
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk-~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~k--------- 126 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLK-DKDEELLKTKDELKHLKKLSEDKNLAEREELQRK--------- 126 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH---------
Confidence 444588999999999999988887766544444433 444444445555555555443 233334444322
Q ss_pred hhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHH
Q 008696 367 SLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446 (557)
Q Consensus 367 ~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~ 446 (557)
+.......++.-.+|..|+++| +|.-.-.+-.|.+- .+|+.++.
T Consensus 127 -------------------L~~~~~~l~~~~~ki~~Lek~l------eL~~k~~~rql~~e-----------~kK~~~~~ 170 (194)
T PF15619_consen 127 -------------------LSQLEQKLQEKEKKIQELEKQL------ELENKSFRRQLASE-----------KKKHKEAQ 170 (194)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHH-----------HHHHHHHH
Confidence 2233345555666777777754 44444444444422 44555666
Q ss_pred HHHHhHHhhhHHHHHhHHHHHHHHhh
Q 008696 447 DELESKIDDLDEMESLNKTLIAKERQ 472 (557)
Q Consensus 447 ~~L~ek~~el~~~e~~nq~Li~ker~ 472 (557)
.++..-..+. +.|++.|-.|+|.
T Consensus 171 ~~~~~l~~ei---~~L~~klkEKer~ 193 (194)
T PF15619_consen 171 EEVKSLQEEI---QRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHH---HHHHHHHHHHhhc
Confidence 6665555554 4677888777774
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.55 E-value=2.9 Score=44.18 Aligned_cols=109 Identities=25% Similarity=0.347 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH
Q 008696 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ 369 (557)
Q Consensus 290 k~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~ 369 (557)
-...+.+-..|+..++....+-..-=-.+-+.++.+|.+...+|+.+.++|..++. ++..+..+
T Consensus 182 l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~----el~~l~~~------------ 245 (325)
T PF08317_consen 182 LRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQE----ELEELEEK------------ 245 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH------------
Confidence 33444444556666666555422211234455555666555555555555554433 11111111
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhc
Q 008696 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 370 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~-~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
+++-..++.++...|.++++.++ .+..=.-||..|+.++..+.++
T Consensus 246 ----------------i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 246 ----------------IEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 22333455666667777777665 3334556666677666665554
No 26
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.39 E-value=15 Score=43.94 Aligned_cols=30 Identities=7% Similarity=0.218 Sum_probs=14.1
Q ss_pred EEeCCChhchh--hHHHHHhhhhhcCCChhhhh
Q 008696 171 VKFNNDWNGFM--QASDFEKAFDADHQGKRHWI 201 (557)
Q Consensus 171 v~F~~dw~Gf~--~A~~fek~Fe~~~~GRkdW~ 201 (557)
+.+-+.-..|. ....+-..|. ...|-..|.
T Consensus 140 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 171 (1179)
T TIGR02168 140 IIEQGKISEIIEAKPEERRAIFE-EAAGISKYK 171 (1179)
T ss_pred heecccHHHHHcCCHHHHHHHHH-HHccHHHHH
Confidence 34555555555 3333444444 334555553
No 27
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.04 E-value=17 Score=43.23 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=68.3
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHH-HH---HhhHHHHHhhh-------hhhchhHhhHHHHHHhhHHHHH
Q 008696 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTER-ER---QKLDADRQQND-------LRNNSLQLASMEQKKADENVLR 384 (557)
Q Consensus 316 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~-er---~kL~~e~~kn~-------~~~~~l~lA~~Eq~kade~vlk 384 (557)
..+.+-+..+|+.+|+.|++|..-|.+--.+.+. .| +-|+.+++--+ .-...|+++.++-.+.--++--
T Consensus 258 d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc 337 (1265)
T KOG0976|consen 258 DMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRC 337 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888899988887766532222221 11 11222222111 1134555555554333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhH
Q 008696 385 LVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (557)
Q Consensus 385 Lve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 457 (557)
-.-++++--|-+-++..+|||+-|. +++.++.++.+++-. .+.+..+-++..++++.++++.
T Consensus 338 ~LlEarrk~egfddk~~eLEKkrd~---al~dvr~i~e~k~nv--------e~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 338 ALLEARRKAEGFDDKLNELEKKRDM---ALMDVRSIQEKKENV--------EEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHH---HHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777778888887663 445555444444321 1234445556666666666554
No 28
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.78 E-value=28 Score=44.87 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=96.7
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHH------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhH
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRL------HYAFVEETRKMQRLAR-DNVRRILEEQEKLSC 324 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l------~~~yneE~~kmQ~~a~-~~~~ri~~e~ekl~~ 324 (557)
..-+..|..+|.+-+..+.-|++...++...+...+-+..+| +...+.++..=+..+- ..+.+.-.+..+|..
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~ 1321 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKE 1321 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 334577888888888888888888888888888777776544 2333444444333322 235566667777777
Q ss_pred HHHHHHhhhHHHHHHHHHHH-------hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 008696 325 ELETKKKKLDSWSKQLNKRE-------ALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEAL 397 (557)
Q Consensus 325 eLe~k~~eL~~r~k~L~k~~-------~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~ 397 (557)
+|+++-+.+..=.+.|+.+. -.-..+++.|..+.+.-...+..|.-|--|+.++-..+...-..|.-..+...
T Consensus 1322 el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~ 1401 (1822)
T KOG4674|consen 1322 ELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDTS 1401 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666665555555444 22233444444444433333444444444444443444444555555555555
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHhhhhH
Q 008696 398 SKILQLEKQLDAKQKLEMEIEDLKGKL 424 (557)
Q Consensus 398 ~ki~~LekqL~~kQ~LELEi~qLkg~L 424 (557)
.+.-.+...+. |.-||+.|+.+|
T Consensus 1402 rk~e~~~~k~~----~~~e~~sl~eeL 1424 (1822)
T KOG4674|consen 1402 RKLEKLKEKLE----LSEELESLKEEL 1424 (1822)
T ss_pred HHHHHHHHHHh----HHHHHHHHHHHH
Confidence 55555555444 555566665555
No 29
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=14 Score=44.70 Aligned_cols=42 Identities=29% Similarity=0.512 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHH
Q 008696 440 KKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (557)
Q Consensus 440 ~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI 485 (557)
..|.+|...+.+-...|+...+.+..|- .--||||++||+|-
T Consensus 432 e~i~~l~~si~e~~~r~~~~~~~~~~~k----~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 432 EEIKELESSINETKGRMEEFDAENTELK----RELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3344444455555555555444444432 33589999999854
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.66 E-value=14 Score=41.08 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=11.2
Q ss_pred HhhhhHhHHHHHHHhHHHhhhhhHH
Q 008696 246 EDAQSKIHVVAHLASKIDMKNEDLS 270 (557)
Q Consensus 246 E~~rk~~~lv~~L~n~i~~kn~~l~ 270 (557)
+..+...+.+..|..+|...+..+.
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=93.10 E-value=23 Score=41.89 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 008696 395 EALSKILQLEKQL 407 (557)
Q Consensus 395 ~~~~ki~~LekqL 407 (557)
.+...+..|+..+
T Consensus 346 ~~~~~~~~le~~~ 358 (880)
T PRK02224 346 SLREDADDLEERA 358 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 32
>PRK09039 hypothetical protein; Validated
Probab=92.83 E-value=16 Score=39.25 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHhhhhhcCCccccccc
Q 008696 474 NDELQEARRELIQGLSDLIGARTNIGVK 501 (557)
Q Consensus 474 ndELqeARkelI~gl~~~~~~~~~IgiK 501 (557)
+.||...|.+++..|.++++++..|.|.
T Consensus 189 ~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 189 VQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 4689999999999999888888777776
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.74 E-value=30 Score=42.30 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=41.9
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhh---hhHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNE---TTMSLSRMLE-----------EKDRLHYAFVEETRKMQRLARDNVRR 314 (557)
Q Consensus 249 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e---~t~sL~r~me-----------Ek~~l~~~yneE~~kmQ~~a~~~~~r 314 (557)
..+..+|+.+...|..-.+++++.+.+... +...+.+.+. ++++....-.++|.+.|...-...++
T Consensus 224 ~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~k 303 (1074)
T KOG0250|consen 224 DHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEK 303 (1074)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888877777653 3333333332 23444555566677777766655555
Q ss_pred HH
Q 008696 315 IL 316 (557)
Q Consensus 315 i~ 316 (557)
|-
T Consensus 304 i~ 305 (1074)
T KOG0250|consen 304 IE 305 (1074)
T ss_pred HH
Confidence 53
No 34
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.65 E-value=26 Score=41.26 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=55.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHh--hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHH
Q 008696 371 ASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLD-AKQ--KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMND 447 (557)
Q Consensus 371 A~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~-~kQ--~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~ 447 (557)
-+.-||-++-.+-+++++||.|+-.+...-+---++|- ++. --|||-.||+.+-+..|..--|.. .. --+.
T Consensus 929 v~kqqq~le~~lkrm~~~~k~ema~iErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqY--fl----qRhq 1002 (1187)
T KOG0579|consen 929 VMKQQQNLEAMLKRMAEKHKEEMASIERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQY--FL----QRHQ 1002 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH--HH----HHHH
Confidence 34455667777778888888776665554433222222 111 138888899988888877432211 11 1123
Q ss_pred HHHhHHhhhHHHHHhHHHHH
Q 008696 448 ELESKIDDLDEMESLNKTLI 467 (557)
Q Consensus 448 ~L~ek~~el~~~e~~nq~Li 467 (557)
=|.--+.+|+.|+-.||.+|
T Consensus 1003 lL~rHekE~eQmqrynQr~i 1022 (1187)
T KOG0579|consen 1003 LLARHEKEMEQMQRYNQREI 1022 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556778888888888887
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.36 E-value=38 Score=42.48 Aligned_cols=39 Identities=23% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHH
Q 008696 442 MKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEA 480 (557)
Q Consensus 442 ~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeA 480 (557)
|+.+..++.....++..+..-...+-..+|.-+|.|.-.
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444444444445555555555544
No 36
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.31 E-value=38 Score=42.43 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhH
Q 008696 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (557)
Q Consensus 396 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 457 (557)
+...-++|..++..++.|+-++.+|+..++-..- +-.++...+..|..++.....+++
T Consensus 869 l~~~klkl~~~l~~r~~le~~L~el~~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR----EIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4555566666788888888888888877753322 122334444444444444444443
No 37
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.24 E-value=16 Score=38.04 Aligned_cols=144 Identities=21% Similarity=0.300 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhh
Q 008696 292 RLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLA 371 (557)
Q Consensus 292 ~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA 371 (557)
.||..|..-...|+.-.++. -.....+-.+|+++...|+.|-+.| ++++.|.+.+.+.-|....-.+.+-+
T Consensus 20 ~l~~~ykq~f~~~reEl~EF----QegSrE~EaelesqL~q~etrnrdl-----~t~nqrl~~E~e~~Kek~e~q~~q~y 90 (333)
T KOG1853|consen 20 LLHHEYKQHFLQMREELNEF----QEGSREIEAELESQLDQLETRNRDL-----ETRNQRLTTEQERNKEKQEDQRVQFY 90 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555554433322 2233344567777777777776654 34556667777766665566666666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHH
Q 008696 372 SMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLD----AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMND 447 (557)
Q Consensus 372 ~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~----~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~ 447 (557)
..+-+-.|++. .-+-.||.+++.|-+||+--| +|.+-+.-.+-+..+|+ ....++.=|..
T Consensus 91 ~q~s~Leddls-----qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLn-----------qAIErnAfLES 154 (333)
T KOG1853|consen 91 QQESQLEDDLS-----QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLN-----------QAIERNAFLES 154 (333)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHH-----------HHHHHHHHHHH
Confidence 55554444321 122356777788887776544 23333333333333333 23456677788
Q ss_pred HHHhHHhhhHHHH
Q 008696 448 ELESKIDDLDEME 460 (557)
Q Consensus 448 ~L~ek~~el~~~e 460 (557)
+|.||+--|+.+.
T Consensus 155 ELdEke~llesvq 167 (333)
T KOG1853|consen 155 ELDEKEVLLESVQ 167 (333)
T ss_pred HhhHHHHHHHHHH
Confidence 8888877766443
No 38
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=92.20 E-value=10 Score=44.38 Aligned_cols=203 Identities=22% Similarity=0.240 Sum_probs=105.9
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAF----VEETRKMQRLARDNVRRILEEQEKLSCELE 327 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~y----neE~~kmQ~~a~~~~~ri~~e~ekl~~eLe 327 (557)
......+.-.+...+..+...+..+.-...++..+-.+...+.... .+...+++..+.+...+...+...+..+|+
T Consensus 113 q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~ 192 (670)
T KOG0239|consen 113 QSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLESDLGDLVTELE 192 (670)
T ss_pred ccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444444555555555556666666666666555544332211 222333555778888888888888888888
Q ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008696 328 TKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQL 407 (557)
Q Consensus 328 ~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL 407 (557)
..+...+.-..+|... ..++..|+.... ....+..++..|+...
T Consensus 193 ~v~~~~~~~~~~l~~~----~~~~~~l~~~~~--------------------------------~~~~~~~~~~~l~~~~ 236 (670)
T KOG0239|consen 193 HVTNSISELESVLKSA----QEERRVLADSLG--------------------------------NYADLRRNIKPLEGLE 236 (670)
T ss_pred HHHHHHHHHHHHhhhh----HHHHHHHHHHhh--------------------------------hhhhHHHhhhhhhhhh
Confidence 7777777766666652 223333332211 1111112222222222
Q ss_pred hHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHh
Q 008696 408 DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQG 487 (557)
Q Consensus 408 ~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~g 487 (557)
....+- |..|+..|+.++.-..+-...+.....++.+-+..-..-+..+.+++..|..++ .-+++|++|=+-
T Consensus 237 ~~~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-----~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 237 STIKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-----KEKEERRKLHNE 308 (670)
T ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 211111 444444444444433322334444555555555555555666778888887655 235677777777
Q ss_pred hhhhcCCccccccc
Q 008696 488 LSDLIGARTNIGVK 501 (557)
Q Consensus 488 l~~~~~~~~~IgiK 501 (557)
+.++ ..||.|.
T Consensus 309 i~eL---kGnIRV~ 319 (670)
T KOG0239|consen 309 ILEL---KGNIRVF 319 (670)
T ss_pred HHHh---hcCceEE
Confidence 7666 4467764
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.92 E-value=37 Score=41.42 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHH
Q 008696 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEM 445 (557)
Q Consensus 396 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l 445 (557)
+-.-+...|+-+.+++..+|+++.|.+-+.-|+. +.....++|+.|
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~----e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES----EKANARKEVEKL 932 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh----hHHHHHHHHHHH
Confidence 3333455677788899999999999988876654 233444455444
No 40
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.80 E-value=34 Score=40.76 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=46.1
Q ss_pred hhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhH
Q 008696 248 AQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQR---LARDNVRRILEEQEKLSC 324 (557)
Q Consensus 248 ~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~---~a~~~~~ri~~e~ekl~~ 324 (557)
.+...++-..|-.+|...++.|..+ ..-+..|.+++.+|.+++..-.++--..-. ...-..+-+-.+|--|+.
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~----~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky 155 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAES----AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY 155 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333 222333444455555555444443221111 112234455667788888
Q ss_pred HHHHHHhhhHHHHHHHH
Q 008696 325 ELETKKKKLDSWSKQLN 341 (557)
Q Consensus 325 eLe~k~~eL~~r~k~L~ 341 (557)
||-..-++|+.|..+.+
T Consensus 156 e~~~~~keleir~~E~~ 172 (769)
T PF05911_consen 156 ELHVLSKELEIRNEERE 172 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877544
No 41
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.75 E-value=25 Score=39.11 Aligned_cols=174 Identities=20% Similarity=0.249 Sum_probs=105.7
Q ss_pred CHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 008696 239 TVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV--EETRKMQRLARDNVRRIL 316 (557)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yn--eE~~kmQ~~a~~~~~ri~ 316 (557)
+..|+-.+....-.. .+.-++..-.+.+++|+---+.+-.--.+++.|+-+|...|+ ||+++=|..-... +|
T Consensus 204 ~tedl~~e~mee~r~---di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE--~l- 277 (502)
T KOG0982|consen 204 ETEDLLVEGMEEERI---DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEE--SL- 277 (502)
T ss_pred chhhhhhhhhhchhh---hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HH-
Confidence 445555555443321 355566677777888887777777777888889888877666 5665555432211 11
Q ss_pred HHHHHhhHHHH---------------HHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHH
Q 008696 317 EEQEKLSCELE---------------TKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADEN 381 (557)
Q Consensus 317 ~e~ekl~~eLe---------------~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~ 381 (557)
.+-++...|+. .+.+-|+.-..+|..+.|...+--.||..+.++-...-..+.+-..+.|+-...
T Consensus 278 ~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~r 357 (502)
T KOG0982|consen 278 SEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVR 357 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222322 233344444444555556555666677777766666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHH
Q 008696 382 VLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIE 418 (557)
Q Consensus 382 vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~ 418 (557)
+.--.-.+.++|++...=|..|-++|.--|.+-+..+
T Consensus 358 m~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 358 MNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6656666888999999989888888876655444433
No 42
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.42 E-value=45 Score=41.40 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=43.7
Q ss_pred chhhhhhhcc-CCCCHHHHHHHhhh----hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH
Q 008696 226 PIGEYLRQEG-KLRTVSDIVQEDAQ----SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM 286 (557)
Q Consensus 226 ~iG~~Lrk~g-dLKTi~ei~~E~~r----k~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~ 286 (557)
.|++||-..+ |.-||.++.++-.. -+-.+|.+|+++|..--..|..++.-++.|---++|+
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4788887655 77777777665443 4567788888888888888888887777776555543
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.34 E-value=41 Score=40.73 Aligned_cols=104 Identities=23% Similarity=0.301 Sum_probs=49.3
Q ss_pred HhhhhhHHHHHHHhhhhhHHHHhHHHH-----HH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhh
Q 008696 263 DMKNEDLSELQCKFNETTMSLSRMLEE-----KD--RLHYAFVEETRKMQRLARDN---VRRILEEQEKLSCELETKKKK 332 (557)
Q Consensus 263 ~~kn~~l~elE~k~~e~t~sL~r~meE-----k~--~l~~~yneE~~kmQ~~a~~~---~~ri~~e~ekl~~eLe~k~~e 332 (557)
...++.+++.-++.-+.-..|+|-+.+ ++ .-...|.+||-..+....=. -.-.-+-.+-|+.++++-...
T Consensus 261 kiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr 340 (1243)
T KOG0971|consen 261 KIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKER 340 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666666666665533 11 11345666666555442211 112223334555555554444
Q ss_pred hHHHHHHHHHHHhhhHHHHHhhHHHHHhhhh---hhchhHhhHHHHHH
Q 008696 333 LDSWSKQLNKREALTERERQKLDADRQQNDL---RNNSLQLASMEQKK 377 (557)
Q Consensus 333 L~~r~k~L~k~~~~~~~er~kL~~e~~kn~~---~~~~l~lA~~Eq~k 377 (557)
+|.-+- |=..|..|++..-. --++.++-.+|||-
T Consensus 341 ~delet-----------dlEILKaEmeekG~~~~~~ss~qfkqlEqqN 377 (1243)
T KOG0971|consen 341 VDELET-----------DLEILKAEMEEKGSDGQAASSYQFKQLEQQN 377 (1243)
T ss_pred HHHHHH-----------HHHHHHHHHHhcCCCCcccchHHHHHHHHHH
Confidence 443333 33445555554322 24566666666654
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.06 E-value=55 Score=40.08 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=63.3
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008696 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKK 330 (557)
Q Consensus 251 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~ 330 (557)
....+.+++..|+....++..+.++++.+...+...-++...|.++--.||-.--..-.....-.-.+.-+...-|..+.
T Consensus 242 ~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~ 321 (1174)
T KOG0933|consen 242 AEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKK 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666667777777777766666665555555555554444443332333333344444555556666677
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 008696 331 KKLDSWSKQLNKREALTERERQKLDAD 357 (557)
Q Consensus 331 ~eL~~r~k~L~k~~~~~~~er~kL~~e 357 (557)
..|+--.+.++++.-.-..+|++|.+.
T Consensus 322 ~tl~~e~~k~e~i~~~i~e~~~~l~~k 348 (1174)
T KOG0933|consen 322 ETLNGEEEKLEEIRKNIEEDRKKLKEK 348 (1174)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 777777777777777777777777543
No 45
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.02 E-value=72 Score=41.41 Aligned_cols=74 Identities=26% Similarity=0.438 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHh
Q 008696 392 EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKER 471 (557)
Q Consensus 392 Eke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker 471 (557)
+-+.+.+.|-.|+.+|..++.+--|+...-+.++ ..++++++++..+.+.+...+..++++++.|-...+
T Consensus 1308 ~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q----------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~ 1377 (1822)
T KOG4674|consen 1308 DYEKLKSEISRLKEELEEKENLIAELKKELNRLQ----------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALS 1377 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556788888888877766555555444444 467888888888888888888888888888877665
Q ss_pred hccH
Q 008696 472 QSND 475 (557)
Q Consensus 472 ~snd 475 (557)
.-|-
T Consensus 1378 e~~~ 1381 (1822)
T KOG4674|consen 1378 EKNA 1381 (1822)
T ss_pred HHHH
Confidence 5544
No 46
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.99 E-value=81 Score=39.37 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=5.6
Q ss_pred ceeeeecccCCC
Q 008696 210 RIYGWFARADDN 221 (557)
Q Consensus 210 ~LYGW~AradD~ 221 (557)
+++-|+-.+..+
T Consensus 519 ~~~eele~~q~~ 530 (1317)
T KOG0612|consen 519 QLEEELEDAQKK 530 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 555555444333
No 47
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.98 E-value=20 Score=40.10 Aligned_cols=90 Identities=20% Similarity=0.389 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccH
Q 008696 397 LSKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSND 475 (557)
Q Consensus 397 ~~ki~~LekqL~-~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~snd 475 (557)
-.+++.|-+|-+ -+|.|.-+..+|+..|.+. +-++.+ ..+|.+|..+|+-..++.+..+.++-+|...--+-.+
T Consensus 306 ~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~----e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~ 380 (521)
T KOG1937|consen 306 NKQMEELTQQWEDTRQPLLQKKLQLREELKNL----ETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPD 380 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc----cchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc
Confidence 345666666654 5778888877887777653 345566 7899999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHhhhhhcC
Q 008696 476 ELQEARRELIQGLSDLIG 493 (557)
Q Consensus 476 ELqeARkelI~gl~~~~~ 493 (557)
..| ||..+.++.++.+
T Consensus 381 dv~--rk~ytqrikEi~g 396 (521)
T KOG1937|consen 381 DVQ--RKVYTQRIKEIDG 396 (521)
T ss_pred hhH--HHHHHHHHHHHHh
Confidence 777 9999999888754
No 48
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.91 E-value=71 Score=38.59 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=10.3
Q ss_pred HHhhhhHHHHHhcCC
Q 008696 17 NEYLEKPYEELRAGK 31 (557)
Q Consensus 17 ~~y~~k~y~~Lk~g~ 31 (557)
+.+....|..+++-.
T Consensus 162 l~lq~~vF~s~~s~r 176 (980)
T KOG0980|consen 162 LELQQTVFSSMNSSR 176 (980)
T ss_pred HHHHHHHHHHhhhcc
Confidence 347777788777654
No 49
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=87.73 E-value=0.29 Score=38.41 Aligned_cols=24 Identities=25% Similarity=0.852 Sum_probs=18.5
Q ss_pred CeeeccCCCCCCcCccccHHHHhhhccC
Q 008696 38 GTLRCPFCSGKKKQDYKHKDLLQHASGV 65 (557)
Q Consensus 38 ~~~~CP~C~gkkk~~y~~~~LLqHA~gv 65 (557)
.+|.||||. + .++...|+.|-..-
T Consensus 1 ~~f~CP~C~-~---~~~~~~L~~H~~~~ 24 (54)
T PF05605_consen 1 DSFTCPYCG-K---GFSESSLVEHCEDE 24 (54)
T ss_pred CCcCCCCCC-C---ccCHHHHHHHHHhH
Confidence 379999997 3 37788999996543
No 50
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.67 E-value=42 Score=35.69 Aligned_cols=94 Identities=23% Similarity=0.353 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhHHhhhhhh---HHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHH----------HH
Q 008696 394 EEALSKILQLEKQLDAKQKLEME---IEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDE----------ME 460 (557)
Q Consensus 394 e~~~~ki~~LekqL~~kQ~LELE---i~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~----------~e 460 (557)
..+..+|-+|+++|...++-.-. ++.|.....-.+-- -.++..+|.+|..+.++.-.+|-- -=
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~----~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKK----AREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888899999887754433 33333333333322 236666777776666655554431 11
Q ss_pred HhHHHHHHHHhhccHHHHHHHHHHHHhhhhh
Q 008696 461 SLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (557)
Q Consensus 461 ~~nq~Li~ker~sndELqeARkelI~gl~~~ 491 (557)
+.-..=+++-+..-||+-++...+-+-|.++
T Consensus 210 de~he~~ve~~~~~~e~~ee~~~~~~elre~ 240 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEFRNLQNELREL 240 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2223345566666677777777776666665
No 51
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=87.66 E-value=54 Score=39.35 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=62.3
Q ss_pred HhHHHhhhhhHHHHHHHhhhhhHHHHhH-------HHHHHHHHHHHHHHHHHH-------HH---------HHHHHHHHH
Q 008696 259 ASKIDMKNEDLSELQCKFNETTMSLSRM-------LEEKDRLHYAFVEETRKM-------QR---------LARDNVRRI 315 (557)
Q Consensus 259 ~n~i~~kn~~l~elE~k~~e~t~sL~r~-------meEk~~l~~~yneE~~km-------Q~---------~a~~~~~ri 315 (557)
...|+.|.+.+.+||-+....+--...+ .|.+.+||-...+|+.+. .+ .+-+|.+..
T Consensus 921 icl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kef 1000 (1424)
T KOG4572|consen 921 ICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEF 1000 (1424)
T ss_pred HHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4566777777777776655444333322 244555555444443332 11 234555666
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 008696 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDAD 357 (557)
Q Consensus 316 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e 357 (557)
--++..+|.+||+++++|+.--.|++++++.--++..+--.+
T Consensus 1001 E~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e 1042 (1424)
T KOG4572|consen 1001 EIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIE 1042 (1424)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 667888999999999999999999999888766655543333
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.13 E-value=1e+02 Score=39.58 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=25.3
Q ss_pred hhhHHHHhhcC---CCCcHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 008696 421 KGKLEVMKHLG---DEDDAAVQKKMKEMNDELESKIDDLDEMES 461 (557)
Q Consensus 421 kg~L~Vmkhm~---~~~d~~~~~k~~~l~~~L~ek~~el~~~e~ 461 (557)
...|+=.+.+- +=.++++...++.....++++...+..++.
T Consensus 420 i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 420 VQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444442 334677887777777777777777765544
No 53
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.62 E-value=74 Score=37.48 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=90.7
Q ss_pred HHHHHHHhhhhhHHHHhHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHHHhhHHHHHHHhhhHH
Q 008696 269 LSELQCKFNETTMSLSRMLEEKDRLHYAFVE---ETRKMQ----------RLARDNVRRILEEQEKLSCELETKKKKLDS 335 (557)
Q Consensus 269 l~elE~k~~e~t~sL~r~meEk~~l~~~yne---E~~kmQ----------~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~ 335 (557)
+..-..++.+.|.+...+--|+..+.+.... |+.++| ......++.....+..||.+|++-+.+|..
T Consensus 480 LE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~ 559 (786)
T PF05483_consen 480 LEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQ 559 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445666666776666666665544432 233333 234456677778888899999999999998
Q ss_pred HHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008696 336 WSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDA 409 (557)
Q Consensus 336 r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~ 409 (557)
...++.-.--.++..+|..+-++-+...+...|.=-.---+|.-+|-.+.+++-..+...+-.+|..--+|+..
T Consensus 560 k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~ 633 (786)
T PF05483_consen 560 KGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNV 633 (786)
T ss_pred HHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888776666677777777776665555444433333334566677778887777777777666665555553
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.57 E-value=63 Score=36.63 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=58.2
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008696 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (557)
Q Consensus 250 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k 329 (557)
...+.|..|...|...+.-+.-......+.......++.+++.....|..++..-+.....-...+ .-...|...|..-
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a 247 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445667777777777777777766666666666666666777777777777655444443333333 4445555666666
Q ss_pred HhhhHHHHHHHHHHHh
Q 008696 330 KKKLDSWSKQLNKREA 345 (557)
Q Consensus 330 ~~eL~~r~k~L~k~~~ 345 (557)
...|.....+|.....
T Consensus 248 ~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 248 SAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555444
No 55
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.29 E-value=50 Score=35.20 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=9.4
Q ss_pred HhhhhhhHHHhhhhHHHHhhc
Q 008696 410 KQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 410 kQ~LELEi~qLkg~L~Vmkhm 430 (557)
+++++-+|+.+...++--++.
T Consensus 248 k~e~~~~I~~ae~~~~~~r~~ 268 (312)
T smart00787 248 KSELNTEIAEAEKKLEQCRGF 268 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 334444444444444444443
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.27 E-value=74 Score=37.10 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=19.1
Q ss_pred HHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhh
Q 008696 245 QEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNE 278 (557)
Q Consensus 245 ~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e 278 (557)
++..+.....|..|++....-..++++||.++.+
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666555556666666655544
No 57
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.43 E-value=91 Score=37.40 Aligned_cols=20 Identities=30% Similarity=0.737 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhHHhhhH
Q 008696 438 VQKKMKEMNDELESKIDDLD 457 (557)
Q Consensus 438 ~~~k~~~l~~~L~ek~~el~ 457 (557)
|+.++++|..+.+.|..+++
T Consensus 547 ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 44555666666655555543
No 58
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.42 E-value=72 Score=36.20 Aligned_cols=39 Identities=38% Similarity=0.584 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhh-------hHHHhhhhHHHHh
Q 008696 390 KREKEEALSKILQLEKQLDAKQKLEM-------EIEDLKGKLEVMK 428 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~kQ~LEL-------Ei~qLkg~L~Vmk 428 (557)
+.+.+.+..++..|..++...+.|+- +|.-|+..|..-+
T Consensus 217 ~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 217 EKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887777765 4444555444333
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.47 E-value=20 Score=35.77 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=68.0
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008696 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (557)
Q Consensus 250 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k 329 (557)
++...+.+++..+....+.+..|+..+......+.++-.|++.|...|+.=|...|+.+---.. =|..-|.+.
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~-------lLEkKl~~l 155 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNL-------LLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 5667788899999999999999999999999999999999999999999988888877654433 334444445
Q ss_pred HhhhHHHHHHHHHH
Q 008696 330 KKKLDSWSKQLNKR 343 (557)
Q Consensus 330 ~~eL~~r~k~L~k~ 343 (557)
...|+.+..||...
T Consensus 156 ~~~lE~keaqL~ev 169 (201)
T PF13851_consen 156 SEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555666666543
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=84.28 E-value=2.4 Score=32.82 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=39.6
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeec-cCCCCcceEEEEeCCChhchhhHHH
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFW-NEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~-~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+.|-|+|. ..+...|++ |+.|.+. .+.... ....+.|+++|.|.+ +..-..|+.
T Consensus 1 l~v~nlp~--------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP--------DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT--------TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC--------cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35778875 457788999 9999987 444444 345688999999987 666666666
No 61
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.78 E-value=45 Score=39.77 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=6.7
Q ss_pred ceeeeecccCC
Q 008696 210 RIYGWFARADD 220 (557)
Q Consensus 210 ~LYGW~AradD 220 (557)
.+-||++|.--
T Consensus 822 ~~Rg~L~rkr~ 832 (1259)
T KOG0163|consen 822 IARGYLARKRH 832 (1259)
T ss_pred HHHHHHHHhhh
Confidence 44577777643
No 62
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.76 E-value=1.1e+02 Score=36.84 Aligned_cols=25 Identities=28% Similarity=0.146 Sum_probs=14.3
Q ss_pred hHHHHHhhcCCch-----hHHhHHHHHHHH
Q 008696 510 PFQDACKNKFPLE-----EAQVEASTLCSL 534 (557)
Q Consensus 510 pF~~ack~k~~~~-----~~~~~a~~lcs~ 534 (557)
.-+.||..-|..+ +++.++.+|.-.
T Consensus 581 ~q~lake~~yk~e~d~~ke~et~~lel~~~ 610 (1118)
T KOG1029|consen 581 SQQLAKEELYKNERDKLKEAETKALELIGE 610 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455676666532 566666666543
No 63
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.61 E-value=1.2e+02 Score=37.14 Aligned_cols=57 Identities=30% Similarity=0.375 Sum_probs=32.3
Q ss_pred HHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008696 339 QLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDA 409 (557)
Q Consensus 339 ~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~ 409 (557)
.|..+-|+--.|++|+..|.++...+++.| .+-.|.-+|+-+.+..+|..|..|.|+
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL--------------~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNSELEEL--------------RRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777776654443332 223344455666666666666666655
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=82.19 E-value=1.1e+02 Score=36.05 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 008696 85 KYLEVDL 91 (557)
Q Consensus 85 k~Le~dl 91 (557)
.++..-|
T Consensus 41 ~ai~~~l 47 (880)
T PRK03918 41 EAILVGL 47 (880)
T ss_pred HHHHHHh
Confidence 3333333
No 65
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.05 E-value=1.1e+02 Score=36.45 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=60.2
Q ss_pred ecccCCCCCC-Cchh-hhhhhccCCCCHHHHHHHh---hhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 008696 215 FARADDNTSE-GPIG-EYLRQEGKLRTVSDIVQED---AQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (557)
Q Consensus 215 ~AradD~~~~-~~iG-~~Lrk~gdLKTi~ei~~E~---~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE 289 (557)
+|+..|.+-. ..+| .|+-..++=.|+.+++.+- ....+..|--+-++...-+..|...|.++..+-. ...+.+
T Consensus 62 ~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpe 139 (916)
T KOG0249|consen 62 MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPE 139 (916)
T ss_pred HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhh
Confidence 5566666532 2233 3454555666666655322 2222333333334444455555555555544322 333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHH
Q 008696 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDS 335 (557)
Q Consensus 290 k~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~ 335 (557)
-+.-.+.-+.+.. ++++|.--|.+-.++|..+++..-.+|..
T Consensus 140 veael~qr~~al~----~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 140 VEAELAQRNAALT----KAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred hHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455554 46677777777778888877776666643
No 66
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=81.58 E-value=63 Score=32.65 Aligned_cols=128 Identities=13% Similarity=0.263 Sum_probs=64.5
Q ss_pred CHHHHHHHhhhhHhHHHHHHHhHHHhh---hhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 239 TVSDIVQEDAQSKIHVVAHLASKIDMK---NEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRI 315 (557)
Q Consensus 239 Ti~ei~~E~~rk~~~lv~~L~n~i~~k---n~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri 315 (557)
||+.++.+..+.....-..+...+..+ ..+|.-||..|+.......++ ......|...-..+...+.++..+|
T Consensus 52 ~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~----K~vi~~~k~NEE~Lkk~~~ey~~~l 127 (207)
T PF05010_consen 52 TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ----KEVIEGYKKNEETLKKCIEEYEERL 127 (207)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 667766665544333333333333333 334444555554433222221 1223333333333334444555555
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHh
Q 008696 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQL 370 (557)
Q Consensus 316 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~l 370 (557)
-.+.++...--..-...|+.=..+++........+-..|....++..++..||.-
T Consensus 128 ~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 128 KKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444433333445666677777777777777777777777766655555543
No 67
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=81.46 E-value=1.2e+02 Score=35.88 Aligned_cols=100 Identities=26% Similarity=0.273 Sum_probs=71.4
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEK 405 (557)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~Lek 405 (557)
|-+.-+.+..+...|++.....-....++..|.. .+..+....++---++.+.+++-+-+.+..++++-+++.
T Consensus 515 l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~-------~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~ 587 (698)
T KOG0978|consen 515 LKASVDKLELKIGKLEEQERGLTSNESKLIKELT-------TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQE 587 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666666555555555555544 345666667777778888888888889999998888888
Q ss_pred HhhHH-----------hhhhhhHHHhhhhHHHHhhcCC
Q 008696 406 QLDAK-----------QKLEMEIEDLKGKLEVMKHLGD 432 (557)
Q Consensus 406 qL~~k-----------Q~LELEi~qLkg~L~Vmkhm~~ 432 (557)
++.+. +.||-|+.+|+++|.-++-+..
T Consensus 588 ~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 588 QYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 77642 5688899999999998888755
No 68
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.79 E-value=67 Score=32.47 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=18.5
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML 287 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~m 287 (557)
..-|+.|...|.-....|...+..+..++.+|..+-
T Consensus 35 E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 35 EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555554443
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.20 E-value=1.7e+02 Score=36.68 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=5.9
Q ss_pred Cceeeeec
Q 008696 209 LRIYGWFA 216 (557)
Q Consensus 209 ~~LYGW~A 216 (557)
..||||--
T Consensus 581 dslyGl~L 588 (1201)
T PF12128_consen 581 DSLYGLSL 588 (1201)
T ss_pred cccceeEe
Confidence 46999874
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.03 E-value=1.4e+02 Score=35.51 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhH
Q 008696 394 EEALSKILQLEKQLDA 409 (557)
Q Consensus 394 e~~~~ki~~LekqL~~ 409 (557)
.++..+|-+|+.+|..
T Consensus 548 ~~lE~E~~~lr~elk~ 563 (697)
T PF09726_consen 548 RQLESELKKLRRELKQ 563 (697)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555543
No 71
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=78.60 E-value=4.8 Score=31.80 Aligned_cols=57 Identities=23% Similarity=0.268 Sum_probs=40.3
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHh
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEK 188 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p-~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~fek 188 (557)
+.|-|+|. +.+...|.+ |+.|.+ .++....++.| .+|+|.|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~--------~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPP--------STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTT--------T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCC--------CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 35778875 346788889 888874 57777777654 4799999996 6667777777654
No 72
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=78.26 E-value=1.4e+02 Score=34.59 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=43.0
Q ss_pred chhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhh
Q 008696 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNET 279 (557)
Q Consensus 226 ~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~ 279 (557)
+.+.|++---+ ++++..|-..+-.++...++++|+...+...+|++++++.
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667664323 8899999999999999999999999999999999999854
No 73
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.13 E-value=1.7e+02 Score=35.44 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=32.7
Q ss_pred chhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHH
Q 008696 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQC 274 (557)
Q Consensus 226 ~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~ 274 (557)
.|-+.+..+++.--...++.+.-.+-+.++..|++.|....-.++.+..
T Consensus 630 ~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ 678 (970)
T KOG0946|consen 630 LIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ 678 (970)
T ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566666777777777777776677777777777777666555555533
No 74
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.12 E-value=1.6e+02 Score=35.33 Aligned_cols=212 Identities=20% Similarity=0.323 Sum_probs=99.8
Q ss_pred CCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 236 KLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRI 315 (557)
Q Consensus 236 dLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri 315 (557)
|++.--++..+..+...+--+.|-.-|+.....|..-+..++..+.++..+-+|+-.+.-... +|+.|....-..+..+
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~-~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE-DLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666666666667777777777777766554433222 2444444444444444
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHH--HHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHH-hhHHHHHHHHHHHHH
Q 008696 316 LEEQEKLSCELETKKKKLDSWSKQLNK--REALTERERQKLDADRQQNDLRNNSLQLASMEQKK-ADENVLRLVEEQKRE 392 (557)
Q Consensus 316 ~~e~ekl~~eLe~k~~eL~~r~k~L~k--~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~k-ade~vlkLve~hkrE 392 (557)
-...++|...|-.+-+.|+.-..-|.- -...++.-+..|++=......-.+.|. ++.. +.-.-..=.+.++++
T Consensus 398 q~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~----e~r~~~e~e~~Eele~~~~e 473 (775)
T PF10174_consen 398 QKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLE----EQRERAEKERQEELETYQKE 473 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444444554444333333322222220 000111111111111000000011111 1110 111112223778889
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHH
Q 008696 393 KEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (557)
Q Consensus 393 ke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~ 459 (557)
-+.+-.++-.|++.|..++- .+..+++...-+-.=..--|++ |+.|...|+-+.++...|
T Consensus 474 ~~~lk~~~~~LQ~eLsEk~~---~l~~~kee~s~l~s~~~K~~s~----i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 474 LKELKAKLESLQKELSEKEL---QLEDAKEEASKLASSQEKKDSE----IERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHHHHhhhhHHHHH---HHHHhhhHHHHHhhccchhhhH----HHHHHHHHHHhhhHHHHH
Confidence 99999999999999999983 2223444333322211111222 455555554444444433
No 75
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.06 E-value=67 Score=37.80 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=20.2
Q ss_pred HHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 405 KQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 405 kqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
++..+..+|=-+|++|||...|-...
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEe
Confidence 34455668888999999999997764
No 76
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=77.96 E-value=81 Score=31.75 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=78.5
Q ss_pred hhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 008696 247 DAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCEL 326 (557)
Q Consensus 247 ~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eL 326 (557)
..-..++.+..|...|...+++.+..|..|......|+ +.|..|++.++... +..-+.+.-...|+. +
T Consensus 13 ~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR----------~ElI~ELkqsKkly-dnYYkL~~KY~~LK~-~ 80 (196)
T PF15272_consen 13 QLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLR----------QELINELKQSKKLY-DNYYKLYSKYQELKK-S 80 (196)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-H
Confidence 44567889999999999999999999999988887776 56666666665433 333344454555544 2
Q ss_pred HHHHhhhHHHHHHHH----HHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 327 ETKKKKLDSWSKQLN----KREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQ 402 (557)
Q Consensus 327 e~k~~eL~~r~k~L~----k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~ 402 (557)
-.+...|..+...|+ .+.+..+...+.+.++.-. +.+ ....|...+++++-+...+|..
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~-------~~~----------r~~el~~~r~~e~~~YesRI~d 143 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLS-------LEL----------RNKELQNERERERIAYESRIAD 143 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHH----------HHHHHHhHHHHHHHHHHHHHHH
Confidence 222233333333332 2233333333334333211 111 1223556667777788888888
Q ss_pred HHHHhh
Q 008696 403 LEKQLD 408 (557)
Q Consensus 403 LekqL~ 408 (557)
||.+|.
T Consensus 144 LE~~L~ 149 (196)
T PF15272_consen 144 LERQLN 149 (196)
T ss_pred HHHHHH
Confidence 888876
No 77
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.32 E-value=1.5e+02 Score=34.50 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=18.0
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE 289 (557)
.+-+..|..+|..-...+.+++..+...+.++..+.++
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e 364 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEE 364 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444455544444
No 78
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=77.19 E-value=2.1e+02 Score=36.20 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=45.0
Q ss_pred HHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 008696 350 ERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 350 er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkh 429 (557)
+++++..+..+-...-..+++...++.+.-.+...|-. .+.....+++.+|...|.||-+|..|...+.-...
T Consensus 827 Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-------e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s 899 (1294)
T KOG0962|consen 827 EKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-------ELKEEKQKIERSLARLQQLEEDIEELSEEITRLDS 899 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444444445566667777776665555444433 34455567778888888888888888877664433
No 79
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.15 E-value=1.6e+02 Score=34.80 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCCHHHHHHH-----hhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHH
Q 008696 236 KLRTVSDIVQE-----DAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML-EEKDRLHYAFVEETRK 303 (557)
Q Consensus 236 dLKTi~ei~~E-----~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~m-eEk~~l~~~yneE~~k 303 (557)
-+||.+=|... +....-.+++-++..-..-.++|..||++|..--.-++--| .|-+.+...|..|+.+
T Consensus 465 TiRtaslvtrq~~Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ek 538 (948)
T KOG0577|consen 465 TIRTASLVTRQIQEHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEK 538 (948)
T ss_pred HHhHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45665544432 22345567777888888889999999999975543333222 2333444455555443
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.87 E-value=97 Score=32.08 Aligned_cols=73 Identities=27% Similarity=0.418 Sum_probs=39.0
Q ss_pred HhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhhhhhHHHhhh
Q 008696 344 EALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQL-DAKQKLEMEIEDLKG 422 (557)
Q Consensus 344 ~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL-~~kQ~LELEi~qLkg 422 (557)
.+.+..+...|..|+..-..+..+ ++- .=.+++...++-..+.+.+..+|..+|+.+ +.++.++.++..+..
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~-----le~--el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINS-----LED--ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666665543222222 222 112344445555566666777777777776 345666666666554
Q ss_pred h
Q 008696 423 K 423 (557)
Q Consensus 423 ~ 423 (557)
+
T Consensus 157 ~ 157 (239)
T COG1579 157 E 157 (239)
T ss_pred H
Confidence 3
No 81
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.87 E-value=2e+02 Score=35.71 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=69.8
Q ss_pred eeeeecccCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH-
Q 008696 211 IYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE- 289 (557)
Q Consensus 211 LYGW~AradD~~~~~~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE- 289 (557)
|=|=+-..--+=++|+.| ++ .|=+-+..+. .+.++|..-|.+... ....+..++.+.+-..+.|..++-+
T Consensus 629 ldGtl~~ksGlmsGG~s~---~~-wdek~~~~L~----~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~ 699 (1141)
T KOG0018|consen 629 LDGTLIHKSGLMSGGSSG---AK-WDEKEVDQLK----EKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDL 699 (1141)
T ss_pred eeeeEEeccceecCCccC---CC-cCHHHHHHHH----HHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444555566677777 33 5544444443 344555556665555 3337777777777666666555543
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHH
Q 008696 290 ---------KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSW 336 (557)
Q Consensus 290 ---------k~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r 336 (557)
+++-++.++.+|..++-... ...|.++.-+.-..+|+.+|++++.+
T Consensus 700 ~~~k~~l~~~~~El~~~~~~i~~~~p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 700 EQLKRSLEQNELELQRTESEIDEFGPEIS-EIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667766665555 66667777777777777777776654
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.54 E-value=98 Score=31.98 Aligned_cols=63 Identities=22% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHH
Q 008696 390 KREKEEALSKILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~----kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~ 459 (557)
+.|--.+...|..|+.+|+. +..||-.|..|...+.... ......|..+..+|.+...+|...
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~-------~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER-------EEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH-------HHHHHhhhccchhHHHHHHHHHHH
Confidence 44455555566655555543 3345555555554444322 233444555555555544444433
No 83
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.73 E-value=57 Score=38.90 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHH
Q 008696 313 RRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKRE 392 (557)
Q Consensus 313 ~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrE 392 (557)
.+++.+-+..+.+++.+..+++....+++++.+.-+.++.+|++++++- .+++.+.+-.++++-++|
T Consensus 519 ~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~-------------~~~~~~~a~~~l~~a~~~ 585 (782)
T PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL-------------LEEAEKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333321 122444455666666666
Q ss_pred HHHHHHHHHHH
Q 008696 393 KEEALSKILQL 403 (557)
Q Consensus 393 ke~~~~ki~~L 403 (557)
-+++++++-++
T Consensus 586 ~~~~i~~lk~~ 596 (782)
T PRK00409 586 ADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHh
Confidence 66666666544
No 84
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=75.73 E-value=46 Score=31.67 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML-EEKDRLHYAFVEETRKMQRLARDNVRRI 315 (557)
Q Consensus 253 ~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~m-eEk~~l~~~yneE~~kmQ~~a~~~~~ri 315 (557)
.+|.++...........+.-+..|++++.+|++|+ .-.+...-++-.-|+-+|..-+...++|
T Consensus 57 ~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki 120 (146)
T PF08702_consen 57 EYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKI 120 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444544444 4444444444444444444444333333
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=75.65 E-value=1.5e+02 Score=33.82 Aligned_cols=105 Identities=17% Similarity=0.352 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHhhhhhhHHHhhhhHH-HHhhcCC--CCcHHHHHHHHHHHHHHH
Q 008696 381 NVLRLVEEQKREKEEALSKILQLEKQ-------LDAKQKLEMEIEDLKGKLE-VMKHLGD--EDDAAVQKKMKEMNDELE 450 (557)
Q Consensus 381 ~vlkLve~hkrEke~~~~ki~~Lekq-------L~~kQ~LELEi~qLkg~L~-Vmkhm~~--~~d~~~~~k~~~l~~~L~ 450 (557)
.+...+..-+.+...+...|..|.+. +..-+.++-+++.|...+. +...+.. ..-+++...++++.+.|.
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~le 393 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLE 393 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34444455555666666667666554 6667888888888888888 4444432 336888899999999999
Q ss_pred hHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHH
Q 008696 451 SKIDDLDEMESLNKTLIAKERQSNDELQEARRELI 485 (557)
Q Consensus 451 ek~~el~~~e~~nq~Li~ker~sndELqeARkelI 485 (557)
+-+.+...+...-+.|-.-|..+.+.|+..++.|-
T Consensus 394 eie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 394 EIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888998888753
No 86
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.38 E-value=1.5e+02 Score=33.67 Aligned_cols=143 Identities=19% Similarity=0.273 Sum_probs=83.6
Q ss_pred HHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhH---HHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 008696 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRM---LEEK-DRL---HYAFVEETRKMQRLARDNVR 313 (557)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~---meEk-~~l---~~~yneE~~kmQ~~a~~~~~ 313 (557)
+..++|-.+--++++..+.++|+.+......|+.++.+. ++++.. +++| +.| ...|.-=+..|-++.++..-
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g 330 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPG 330 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcch
Confidence 345567777889999999999999999999998888765 333322 2222 222 12333445566677666655
Q ss_pred HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhh------h-------HHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhH
Q 008696 314 RILEEQEKLSCELETKKKKLDSWSKQLNKREAL------T-------ERERQKLDADRQQNDLRNNSLQLASMEQKKADE 380 (557)
Q Consensus 314 ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~------~-------~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade 380 (557)
.+ ++|+.+++-+-.+|++-..+.+.+-++ + .+||.+|..|..+-..+.+
T Consensus 331 ~l----~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~-------------- 392 (622)
T COG5185 331 KL----EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSD-------------- 392 (622)
T ss_pred HH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHH--------------
Confidence 54 677777777766666555544444332 1 2355555555444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008696 381 NVLRLVEEQKREKEEALSKILQ 402 (557)
Q Consensus 381 ~vlkLve~hkrEke~~~~ki~~ 402 (557)
.+.+-|-++++|-+..-+.+.+
T Consensus 393 ~L~k~V~~~~leaq~~~~slek 414 (622)
T COG5185 393 KLTKSVKSRKLEAQGIFKSLEK 414 (622)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 4455555555555444443333
No 87
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.08 E-value=98 Score=31.26 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHh
Q 008696 389 QKREKEEALSKILQLEKQLDAKQ 411 (557)
Q Consensus 389 hkrEke~~~~ki~~LekqL~~kQ 411 (557)
...+......++..++.++..++
T Consensus 124 ~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 124 LQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 88
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=74.20 E-value=1.5e+02 Score=33.01 Aligned_cols=78 Identities=28% Similarity=0.269 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHH
Q 008696 391 REKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKE 470 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ke 470 (557)
||..++.+--.+|-.- |-.||.+|++-|-- --|+..-.-..-+--=+|.--|.=|+.++.++..-.+.|-
T Consensus 463 rEnQELnaHNQELnnR------LaaEItrLRtlltg-dGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk--- 532 (593)
T KOG4807|consen 463 RENQELNAHNQELNNR------LAAEITRLRTLLTG-DGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK--- 532 (593)
T ss_pred HhhHHHHHHHHHHhhH------HHHHHHHHHHHhcc-CCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 5666665555555443 45689999987641 1111100111112223555566777777777766666665
Q ss_pred hhccHHHHHHHH
Q 008696 471 RQSNDELQEARR 482 (557)
Q Consensus 471 r~sndELqeARk 482 (557)
||||-|-+
T Consensus 533 ----DELQtalr 540 (593)
T KOG4807|consen 533 ----DELQTALR 540 (593)
T ss_pred ----HHHHHHHh
Confidence 77776654
No 89
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.01 E-value=1.6e+02 Score=32.82 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHH
Q 008696 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLE 425 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~ 425 (557)
+.+.+.+-..|.+++......+.+.-.+..++..+.
T Consensus 312 ~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~ 347 (562)
T PHA02562 312 QHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIS 347 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444444444444333
No 90
>PRK12704 phosphodiesterase; Provisional
Probab=72.85 E-value=1.8e+02 Score=33.24 Aligned_cols=54 Identities=26% Similarity=0.368 Sum_probs=28.2
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhh
Q 008696 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKGK 423 (557)
Q Consensus 370 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg~ 423 (557)
.|.+-+..|-+.+++-+++.-+.--..+-+-.+-|.+..+.++ |-.-||+.-+-
T Consensus 147 ~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~~ 204 (520)
T PRK12704 147 ISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAAD 204 (520)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 4555566677778887776654332222222333333333333 55666666543
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=72.84 E-value=8 Score=28.97 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=32.3
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCC
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~d 176 (557)
++|-|+|. +.+...|++ |..|.+.. +....++..++|++.|.|.+.
T Consensus 2 v~i~~l~~--------~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP--------DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC--------cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 56777754 346678888 88898754 444444556789999999864
No 92
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=72.50 E-value=2.1e+02 Score=34.02 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=21.6
Q ss_pred HHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHH
Q 008696 242 DIVQEDAQSKIHVVAHLASKIDMKNEDLSELQC 274 (557)
Q Consensus 242 ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~ 274 (557)
|.++-..-|+.+.|.-|.+.|+.-...|..+|.
T Consensus 342 d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~ 374 (961)
T KOG4673|consen 342 DDVQLELDKTKKEIKMLNNALEAREAQLLADEI 374 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555567777777788887777666665543
No 93
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.09 E-value=1.3e+02 Score=34.35 Aligned_cols=7 Identities=29% Similarity=0.287 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 008696 480 ARRELIQ 486 (557)
Q Consensus 480 ARkelI~ 486 (557)
||+-|+.
T Consensus 184 a~~i~~~ 190 (514)
T TIGR03319 184 AKEILAT 190 (514)
T ss_pred HHHHHHH
Confidence 3333333
No 94
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.07 E-value=2.1e+02 Score=32.83 Aligned_cols=82 Identities=23% Similarity=0.258 Sum_probs=40.8
Q ss_pred hhHHhhhhhhHHHhhhhHHHHhhcCCC----CcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHH
Q 008696 407 LDAKQKLEMEIEDLKGKLEVMKHLGDE----DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARR 482 (557)
Q Consensus 407 L~~kQ~LELEi~qLkg~L~Vmkhm~~~----~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARk 482 (557)
++.-..+.-+|++|...|+- .-+.=+ +-.++...++.|.++..+-.+....++.+-|- .-+=|.+++++..+-+
T Consensus 447 ~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRfr~~~~~V~~~f~ 524 (569)
T PRK04778 447 LEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRYRSDNEEVAEALN 524 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHH
Confidence 44445556666666665553 222111 11123334444444444444444444444444 3344567777777777
Q ss_pred HHHHhhhh
Q 008696 483 ELIQGLSD 490 (557)
Q Consensus 483 elI~gl~~ 490 (557)
+.-.-|++
T Consensus 525 ~Ae~lF~~ 532 (569)
T PRK04778 525 EAERLFRE 532 (569)
T ss_pred HHHHHHHh
Confidence 76666653
No 95
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.42 E-value=1.6e+02 Score=31.00 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhh
Q 008696 384 RLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGK 423 (557)
Q Consensus 384 kLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~ 423 (557)
.++++-..---.+..++.-||-+||+||-|=-++|+||.-
T Consensus 133 ~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdE 172 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDE 172 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445555555667788888999999999998888888754
No 96
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.37 E-value=2.1e+02 Score=32.42 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=15.3
Q ss_pred ccCCCCCCCchhhhhhhccCCCC
Q 008696 217 RADDNTSEGPIGEYLRQEGKLRT 239 (557)
Q Consensus 217 radD~~~~~~iG~~Lrk~gdLKT 239 (557)
|-+||-+.+-|-+...+..|=|.
T Consensus 278 rVWDYAGDnYVhRl~~~~~dGkl 300 (493)
T KOG0804|consen 278 RVWDYAGDNYVHRLPQSKTDGKL 300 (493)
T ss_pred eeeecccchhhhhccccCCCCce
Confidence 56788877777777666555443
No 97
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.77 E-value=97 Score=37.00 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=13.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 008696 324 CELETKKKKLDSWSKQLNKREALTERERQKLDAD 357 (557)
Q Consensus 324 ~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e 357 (557)
..|+.++++++....++++.....+..++.|+++
T Consensus 518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~ 551 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE 551 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333344444333
No 98
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=67.60 E-value=2.8e+02 Score=33.49 Aligned_cols=32 Identities=44% Similarity=0.683 Sum_probs=19.2
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHH-HHhhcC
Q 008696 400 ILQLEKQLDAKQKLEMEIEDLKGKLE-VMKHLG 431 (557)
Q Consensus 400 i~~LekqL~~kQ~LELEi~qLkg~L~-Vmkhm~ 431 (557)
+.+++..++.-+.++-++++++.+|+ +-+.++
T Consensus 680 ~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~ 712 (908)
T COG0419 680 EEQLEEKLEELEQLEEELEQLREELEELLKKLG 712 (908)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666667777777777763 344443
No 99
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=67.41 E-value=1.5e+02 Score=30.07 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHH
Q 008696 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARR 482 (557)
Q Consensus 437 ~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARk 482 (557)
.+..+|..|...|.+-+...+..+.-++.|-..--.-.++|...+.
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888877777777776555555555554444
No 100
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=67.03 E-value=2.6e+02 Score=32.87 Aligned_cols=119 Identities=17% Similarity=0.254 Sum_probs=72.2
Q ss_pred HHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhh----------hHHHHhHHHHHH----HHHHHHHHHHHHHHHH
Q 008696 242 DIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNET----------TMSLSRMLEEKD----RLHYAFVEETRKMQRL 307 (557)
Q Consensus 242 ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~----------t~sL~r~meEk~----~l~~~yneE~~kmQ~~ 307 (557)
....--...+...+....-.|.+.|.|...+-...+.- +.++.+-+-+++ +.-+.|.+.|..+-..
T Consensus 154 ~~l~~te~~T~~A~sa~n~~I~alndh~~~~kes~d~s~~~~w~sv~~aL~~~~~~ad~da~AEk~aRn~~e~L~~i~n~ 233 (657)
T KOG1854|consen 154 KLLQSTENITKLATSAKNVAIGALNDHVNILKESLDDSKEAGWNSVTTALKLPESAADKDATAEKSARNAQEKLVTIANL 233 (657)
T ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 34444445666666677777888888888766666655 566665554433 5566666777776554
Q ss_pred --------HHHHHHHHHHHHHHhhHHHHHHHhhhH---HHHHHHHHHHhhhHHHHHhhHHHHHh
Q 008696 308 --------ARDNVRRILEEQEKLSCELETKKKKLD---SWSKQLNKREALTERERQKLDADRQQ 360 (557)
Q Consensus 308 --------a~~~~~ri~~e~ekl~~eLe~k~~eL~---~r~k~L~k~~~~~~~er~kL~~e~~k 360 (557)
+-.++...-+--.+|..+|++-.+++- +-..=+.+.--.-+.-|..++.|++.
T Consensus 234 g~~~eTaq~nPlI~~t~~ta~kLs~qldnv~~ev~~~~se~~vv~ky~~~ve~ar~~F~~EL~s 297 (657)
T KOG1854|consen 234 GETGETAQANPLITATKDTAHKLSNQLDNVKREVSSSNSEAEVVGKYSELVEKARHQFEQELES 297 (657)
T ss_pred cccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445555556677777777777732 22222344444455667778888775
No 101
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.01 E-value=1.9e+02 Score=31.57 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=26.3
Q ss_pred cCCCCCCcCccccHHHHhhhccCCCCCCCcChHHHHhHHHHHHHHHHhcC
Q 008696 43 PFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLA 92 (557)
Q Consensus 43 P~C~gkkk~~y~~~~LLqHA~gvg~sss~r~~k~ka~H~aLak~Le~dl~ 92 (557)
-||+.. ++++|-.|-+.+- + +-+..+----..||.+|-...+
T Consensus 16 ~f~~~~-----~~kpl~r~yFa~~-~--~Np~eQF~~F~~L~~WL~~~~g 57 (359)
T PF10498_consen 16 DFCKKR-----KMKPLSRHYFAVP-S--TNPGEQFYYFTSLCAWLISKAG 57 (359)
T ss_pred HHhhhc-----CCCCCCHHHhcCC-C--CCchHHHHHHHHHHHHHHHhcC
Confidence 477622 3778888877631 1 2234556666778888888666
No 102
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=66.94 E-value=8.9 Score=37.46 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 008696 395 EALSKILQLEKQLDAKQKLEMEIEDLKG 422 (557)
Q Consensus 395 ~~~~ki~~LekqL~~kQ~LELEi~qLkg 422 (557)
.+..+..-||-+||+|..|.-++|+||.
T Consensus 11 ~AIERnalLE~ELdEKE~L~~~~QRLkD 38 (166)
T PF04880_consen 11 QAIERNALLESELDEKENLREEVQRLKD 38 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556688899999999999999874
No 103
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=66.84 E-value=2.2e+02 Score=34.31 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhh
Q 008696 378 ADENVLRLVEEQKREKEEALSKILQLEKQL-DAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDL 456 (557)
Q Consensus 378 ade~vlkLve~hkrEke~~~~ki~~LekqL-~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el 456 (557)
.+|+++|.+|.|+.|...+.+-|..-+++| ..||.-++|+.++|--++ +..-+|+.++=+|
T Consensus 456 kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~-----------eal~~~k~~q~kL------- 517 (861)
T PF15254_consen 456 KNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE-----------EALVNVKSLQFKL------- 517 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhH-------
Confidence 678899999999999999999999888885 678989999888764332 2223333333333
Q ss_pred HHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhh
Q 008696 457 DEMESLNKTLIAKERQSNDELQEARRELIQGLS 489 (557)
Q Consensus 457 ~~~e~~nq~Li~ker~sndELqeARkelI~gl~ 489 (557)
+.-|.-|+.|-|--|+-.-|+...| +|+.+|.
T Consensus 518 e~sekEN~iL~itlrQrDaEi~RL~-eLtR~LQ 549 (861)
T PF15254_consen 518 EASEKENQILGITLRQRDAEIERLR-ELTRTLQ 549 (861)
T ss_pred HHHHhhhhHhhhHHHHHHHHHHHHH-HHHHHHH
Confidence 3334446666666666555554433 4444443
No 104
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.79 E-value=1.5e+02 Score=35.51 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 008696 311 NVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (557)
Q Consensus 311 ~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~k 360 (557)
...+++.+-+..+.+++.++.+++....++++....-+.+..+|++++++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666666666666666655543
No 105
>PRK09039 hypothetical protein; Validated
Probab=66.58 E-value=1.9e+02 Score=31.13 Aligned_cols=49 Identities=22% Similarity=0.240 Sum_probs=38.6
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH
Q 008696 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV 298 (557)
Q Consensus 250 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yn 298 (557)
..+..|+.|...+...+.....++.........|+-...++..|...|.
T Consensus 57 ~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 57 RLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444566788888888888888888888888888877777777777766
No 106
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=66.30 E-value=2.4e+02 Score=32.17 Aligned_cols=55 Identities=29% Similarity=0.409 Sum_probs=28.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhH
Q 008696 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKL 424 (557)
Q Consensus 370 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg~L 424 (557)
.|.+-+..|-+.+++-+++.-+.--...-+-.+-|.+..+..+ |-.-||+.-+-.
T Consensus 141 ~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~~ 199 (514)
T TIGR03319 141 ISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGDH 199 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 4555555677778887776654332222222222333333333 666677665443
No 107
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.04 E-value=1.5e+02 Score=35.47 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=35.1
Q ss_pred HHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 243 IVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEE 318 (557)
Q Consensus 243 i~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e 318 (557)
+..++....+.++..|..+...-.+...+++....+.....++..++.+.+.+...+ +.+.|++.+++++.+
T Consensus 510 ~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~----~~~~~~~~a~~~l~~ 581 (782)
T PRK00409 510 LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK----LLEEAEKEAQQAIKE 581 (782)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 334444566667777666555555555555554444444444444444444333333 333444444444433
No 108
>PTZ00121 MAEBL; Provisional
Probab=64.36 E-value=4.3e+02 Score=34.39 Aligned_cols=70 Identities=23% Similarity=0.371 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 008696 287 LEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (557)
Q Consensus 287 meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~k 360 (557)
.+|...|-..-.+|.+..|..-.+.+.+++.+..+.+.+-.-+..+-..+..+|-+ .+.+|+++++.+++
T Consensus 1572 aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk~E~~kk----~eeekKk~Eelkk~ 1641 (2084)
T PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQLKKK 1641 (2084)
T ss_pred HhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 33444555566677777776666777777777766665544443333333333332 33455555544433
No 109
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=64.31 E-value=2.9e+02 Score=32.39 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 281 MSLSRMLEEKDRLHYAFVEETRKMQRLAR 309 (557)
Q Consensus 281 ~sL~r~meEk~~l~~~yneE~~kmQ~~a~ 309 (557)
.||..+--|||...+.++.|....|+..+
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~ 32 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQ 32 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 110
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.55 E-value=2.9e+02 Score=32.12 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=57.0
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HH---HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Q 008696 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KD---RLHYAFVEETRKM---QRLARDNVRRILEEQEKLS 323 (557)
Q Consensus 253 ~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE---k~---~l~~~yneE~~km---Q~~a~~~~~ri~~e~ekl~ 323 (557)
+.-+.|.+-+.+-.-++.+|+.+.-...-.|.++=+| ++ ..+++-+.++++. |..+-..+.++..|.++|.
T Consensus 266 e~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~ 345 (581)
T KOG0995|consen 266 EKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLK 345 (581)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3444455555555555566655555555555544433 22 3344555555554 3446677888888999998
Q ss_pred HHHHHHHhhhHHHHHHHHHHHh
Q 008696 324 CELETKKKKLDSWSKQLNKREA 345 (557)
Q Consensus 324 ~eLe~k~~eL~~r~k~L~k~~~ 345 (557)
.+|..-..++|.+.+.+=++.-
T Consensus 346 r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 346 RELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 8888888888887777655443
No 111
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=63.09 E-value=3.8e+02 Score=33.29 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=57.6
Q ss_pred eCCChhchhhHHHHHhhhhhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhH-
Q 008696 173 FNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSK- 251 (557)
Q Consensus 173 F~~dw~Gf~~A~~fek~Fe~~~~GRkdW~~~~~~~~~~LYGW~AradD~~~~~~iG~~Lrk~gdLKTi~ei~~E~~rk~- 251 (557)
|+.+..-=.+-..|-.+|..| -+.|.-|++. +-|++| ..|.+|+=++..+.--.
T Consensus 119 iN~~a~t~s~i~elv~~fNIQ--------------i~NLCqFLpQ-------DkV~EF----a~L~pi~LL~eTekAig~ 173 (1072)
T KOG0979|consen 119 INDSATTKSEIEELVAHFNIQ--------------IDNLCQFLPQ-------DKVKEF----ARLSPIELLVETEKAIGA 173 (1072)
T ss_pred eccchhhhHHHHHHHHHHhcc--------------cCchhhhccH-------HHHHHH----HcCChHHHHHHHHHhcCc
Confidence 344444445556677777744 1344444422 347777 56788887776655433
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHH
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKD 291 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~ 291 (557)
..|+.++ ..+.......+.||.+|+..+..|.++-.+.+
T Consensus 174 ~~ll~~h-~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~ 212 (1072)
T KOG0979|consen 174 EELLQYH-IELMDLREDEKSLEDKLTTKTEKLNRLEDEID 212 (1072)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444 35667777888888888888888887776544
No 112
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.91 E-value=1.8e+02 Score=29.49 Aligned_cols=84 Identities=19% Similarity=0.401 Sum_probs=53.7
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhh---hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 008696 251 KIHVVAHLASKIDMKNEDLSELQCKFNET---TMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELE 327 (557)
Q Consensus 251 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~---t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe 327 (557)
.+..|..+.+.+..+.....++-.+|.+. ...+..+|++-++.+...-+|-.+-...+....++|+.+...+..+|.
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~ 86 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLN 86 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHH
Confidence 34455555555555444455555544443 456777777777777766666666666677778888888888888887
Q ss_pred HHHhhhH
Q 008696 328 TKKKKLD 334 (557)
Q Consensus 328 ~k~~eL~ 334 (557)
|.-...-
T Consensus 87 s~E~sfs 93 (207)
T PF05010_consen 87 SLEKSFS 93 (207)
T ss_pred HHHhhHH
Confidence 6554443
No 113
>PRK09343 prefoldin subunit beta; Provisional
Probab=62.53 E-value=1.3e+02 Score=27.67 Aligned_cols=80 Identities=24% Similarity=0.442 Sum_probs=49.2
Q ss_pred hhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHH---------HHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHH
Q 008696 407 LDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKM---------KEMNDELESKIDDLDEMESLNKTLIAKERQSNDEL 477 (557)
Q Consensus 407 L~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~---------~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndEL 477 (557)
..++|.|+.++.+++..+.=+.-++ +|..+++-+ +++..+|.++.+ .++.--.+|-.++..-...+
T Consensus 27 ~~q~~~le~q~~e~~~~~~EL~~L~--~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E---~ie~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 27 LQQKSQIDLELREINKALEELEKLP--DDTPIYKIVGNLLVKVDKTKVEKELKERKE---LLELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--CcchhHHHhhHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888887777777776 456666553 444455544433 33455556666665555666
Q ss_pred HHHHHHHHHhhhhh
Q 008696 478 QEARRELIQGLSDL 491 (557)
Q Consensus 478 qeARkelI~gl~~~ 491 (557)
.+.+..|-.-+...
T Consensus 102 ~e~q~~l~~ll~~~ 115 (121)
T PRK09343 102 KELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666555543
No 114
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=62.42 E-value=2.5 Score=49.22 Aligned_cols=65 Identities=23% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHH
Q 008696 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNK 464 (557)
Q Consensus 397 ~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq 464 (557)
.....+|++++..-+++..+++.++..|+-+. .+-+..+..+|++|...|..+..+|..+++...
T Consensus 536 ~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~---~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k 600 (713)
T PF05622_consen 536 SELKQKLEEHLEKLRELKDELQKKREQLEELE---QELNQSLSQKIEELEEALQKKEEEMRAMEERYK 600 (713)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Confidence 33334555555555555555555555444322 122334467899999999999999988876443
No 115
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.25 E-value=3.9e+02 Score=33.23 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=8.6
Q ss_pred CceeeeecccCC
Q 008696 209 LRIYGWFARADD 220 (557)
Q Consensus 209 ~~LYGW~AradD 220 (557)
.+|-|+-|+.+-
T Consensus 285 eQLq~lrarse~ 296 (1195)
T KOG4643|consen 285 EQLQKLRARSEG 296 (1195)
T ss_pred HHHHHHHhcccc
Confidence 377777777766
No 116
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.58 E-value=2.9e+02 Score=31.44 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhh
Q 008696 391 REKEEALSKILQLEKQLDAKQKLEM 415 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ~LEL 415 (557)
..-+++..+|-.||+-++.....+.
T Consensus 378 ~~l~~~~~~~~~le~~~~~~~~~~~ 402 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDARSEAED 402 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666655544443
No 117
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.26 E-value=2.7 Score=48.99 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCC------cHHHHHHHHH-------HHHHHHhHHhhhH
Q 008696 391 REKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDED------DAAVQKKMKE-------MNDELESKIDDLD 457 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~------d~~~~~k~~~-------l~~~L~ek~~el~ 457 (557)
-|+..+-.|+..+|.-..+=..|++++++|...+.-..-+..+. .+++...+.. |.+++.....++.
T Consensus 288 Ee~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 288 EEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 46677778888888777777899999999999999888775442 2455555543 3445555666666
Q ss_pred HHHHhHHHHHHHHhhccHHHHHHHHH
Q 008696 458 EMESLNKTLIAKERQSNDELQEARRE 483 (557)
Q Consensus 458 ~~e~~nq~Li~ker~sndELqeARke 483 (557)
.++..|+.|-..-....+++++++..
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777665444455555555443
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.93 E-value=56 Score=31.16 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhcc
Q 008696 395 EALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSN 474 (557)
Q Consensus 395 ~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sn 474 (557)
++-..|.+|..||. .|.-++..|+..|..+...+. .+++...|..|..++...++.|+.+.+ +... -+.
T Consensus 76 ~ld~ei~~L~~el~---~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~-----vs~ 144 (169)
T PF07106_consen 76 ELDAEIKELREELA---ELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS-GSKP-----VSP 144 (169)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-----CCH
Confidence 34445677777664 577888889999999988876 457889999999999999999888776 4333 234
Q ss_pred HHHHHHHHH
Q 008696 475 DELQEARRE 483 (557)
Q Consensus 475 dELqeARke 483 (557)
+|.+.+.+.
T Consensus 145 ee~~~~~~~ 153 (169)
T PF07106_consen 145 EEKEKLEKE 153 (169)
T ss_pred HHHHHHHHH
Confidence 455544443
No 119
>PRK00106 hypothetical protein; Provisional
Probab=60.32 E-value=3.2e+02 Score=31.54 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=27.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhh
Q 008696 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKG 422 (557)
Q Consensus 370 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg 422 (557)
.|.+-+..|-+.+++-+++.-+.--+.+-+-.+-|-+..+.++ +-.-||+.-+
T Consensus 162 ~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~ 218 (535)
T PRK00106 162 VAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAG 218 (535)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555556677778877776654333333222223333344433 5666666554
No 120
>smart00030 CLb CLUSTERIN Beta chain.
Probab=59.90 E-value=41 Score=33.96 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q 008696 378 ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLE 414 (557)
Q Consensus 378 ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LE 414 (557)
...++|+-.++-|++||+|++.....|++|.+.|.+=
T Consensus 44 eh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 44 ERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999864
No 121
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=59.58 E-value=1.9e+02 Score=28.61 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=24.4
Q ss_pred hhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhH
Q 008696 422 GKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLN 463 (557)
Q Consensus 422 g~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~n 463 (557)
-+..|-..+.+-+-.+....++.+.+...+.+...+.+..+.
T Consensus 147 a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 147 AQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555554445556666777776666666666555555
No 122
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.61 E-value=1.4e+02 Score=31.63 Aligned_cols=100 Identities=23% Similarity=0.328 Sum_probs=53.6
Q ss_pred hHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCC
Q 008696 354 LDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDE 433 (557)
Q Consensus 354 L~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~ 433 (557)
|..|+++.--+..+|..|-..|+...++...-.---|||..-+..---.||+ .+|+|.-+++-=.+++.++.--
T Consensus 30 LkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek---~rqKlshdlq~Ke~qv~~lEgQ--- 103 (307)
T PF10481_consen 30 LKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK---TRQKLSHDLQVKESQVNFLEGQ--- 103 (307)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH---HHHHhhHHHhhhHHHHHHHHHH---
Confidence 3334444444445555555555555555444444445555555555555554 3555555544433333333211
Q ss_pred CcHHHHHHHHHHHHHHHhHHhhhHHHH
Q 008696 434 DDAAVQKKMKEMNDELESKIDDLDEME 460 (557)
Q Consensus 434 ~d~~~~~k~~~l~~~L~ek~~el~~~e 460 (557)
-...|+.|+.|..+|.-...+|+...
T Consensus 104 -l~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 104 -LNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12557788888888888888887544
No 123
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.27 E-value=4e+02 Score=32.06 Aligned_cols=150 Identities=24% Similarity=0.320 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHH
Q 008696 297 FVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQK 376 (557)
Q Consensus 297 yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~ 376 (557)
-.+|-|.-|+...++.+.+-+-+.+...|.-++++..|.-..-|++++.+.- .+++++-. +..++.. .--.+||.
T Consensus 803 QkeE~R~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~i---E~~Eq~h~-~rlR~ea-kRir~EQe 877 (1187)
T KOG0579|consen 803 QKEEARQQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEI---EDTEQAHE-HRLRNEA-KRIRIEQE 877 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHH-HHhhhhhH
Confidence 3456666666666776666666667777777777666655444444333221 22222211 1111111 11223442
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHhhhh-hhH-HHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHh
Q 008696 377 KADENVLRLVEEQKREKEEALSKILQLEKQ---LDAKQKLE-MEI-EDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELES 451 (557)
Q Consensus 377 kade~vlkLve~hkrEke~~~~ki~~Lekq---L~~kQ~LE-LEi-~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~e 451 (557)
-++-++-+.-|.+|.++-..+..|-++ =.-||.-| .|| +||+.+==|||.-.. -+.-+++.+..-.+++..
T Consensus 878 ---kd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~-le~~lkrm~~~~k~ema~ 953 (1187)
T KOG0579|consen 878 ---KDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQN-LEAMLKRMAEKHKEEMAS 953 (1187)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 233344444444555444444333322 12223222 222 467777778887432 233444444444555544
Q ss_pred HHhh
Q 008696 452 KIDD 455 (557)
Q Consensus 452 k~~e 455 (557)
.+.+
T Consensus 954 iEre 957 (1187)
T KOG0579|consen 954 IERE 957 (1187)
T ss_pred HHHH
Confidence 4433
No 124
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=58.27 E-value=17 Score=37.77 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=37.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhch
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGF 180 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf 180 (557)
.++|-|+|... +...|++ |+.|.++ .|+.++++ ....|+++|.|.+--.-.
T Consensus 271 ~lfV~NL~~~~--------~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSPDT--------DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 37789998643 5677899 9999976 56666654 457899999998755443
No 125
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=58.25 E-value=3.5e+02 Score=31.36 Aligned_cols=184 Identities=20% Similarity=0.215 Sum_probs=94.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 008696 280 TMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (557)
Q Consensus 280 t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~ 359 (557)
..+.+-++++-.-+.+.|..||+..+..++...- -+..+-.+.+|...+++|-+.-. .....|-.|-....+.+=
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~~F~~eL~~Ai~eiRaqye---~~~~~nR~diE~~Y~~kI 277 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNREYFKNELALAIREIRAQYE---AISRQNRKDIESWYKRKI 277 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHH
Confidence 3445556677777788888888888777666541 23334455667777776554322 222223222222222211
Q ss_pred hhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHH
Q 008696 360 QNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQ 439 (557)
Q Consensus 360 kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~ 439 (557)
.+ -+.+-..+..++..+.|+|+++.. .--.+..++-.||.. -+.|+-.|+.|+-+|.=-..+-...=.+--
T Consensus 278 ~~--i~~~~~~~~~~~~~~rEEl~~~R~----~i~~Lr~klselE~~---n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd 348 (546)
T KOG0977|consen 278 QE--IRTSAERANVEQNYAREELRRIRS----RISGLRAKLSELESR---NSALEKRIEDLEYQLDEDQRSFEQALNDKD 348 (546)
T ss_pred HH--HHhhhccccchhHHHHHHHHHHHh----cccchhhhhcccccc---ChhHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence 11 122334566777777777776643 233455666666554 356778888887776533332111111111
Q ss_pred HHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHH
Q 008696 440 KKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (557)
Q Consensus 440 ~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkel 484 (557)
..|.+|.++-....-||+.|=+..++|- -|+--.||-|
T Consensus 349 ~~i~~mReec~~l~~Elq~LlD~ki~Ld-------~EI~~YRkLL 386 (546)
T KOG0977|consen 349 AEIAKMREECQQLSVELQKLLDTKISLD-------AEIAAYRKLL 386 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhHHH-------hHHHHHHHHh
Confidence 2244444444444444444444444443 3555555543
No 126
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=57.92 E-value=3e+02 Score=30.57 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=84.3
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008696 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELET 328 (557)
Q Consensus 249 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~ 328 (557)
-|-..+...|.--|+..-+.-.+|+-..-+.+..|+-.-|.+++-...-..---+.|--.-+..+..++|.-.||.+-++
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666677777777777778888888888888888888888766555555688888888899999999999999999
Q ss_pred HHhhhHHHHHHHHHHHhhhHHHHHhhHH
Q 008696 329 KKKKLDSWSKQLNKREALTERERQKLDA 356 (557)
Q Consensus 329 k~~eL~~r~k~L~k~~~~~~~er~kL~~ 356 (557)
-.++|+.+.++|+.+..+-+-.-.-|+-
T Consensus 361 L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999998877655544444443
No 127
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.59 E-value=2e+02 Score=28.40 Aligned_cols=69 Identities=25% Similarity=0.399 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCC--CcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHH
Q 008696 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDE--DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIA 468 (557)
Q Consensus 397 ~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~--~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ 468 (557)
..++-+|.++ .+.++.+|..|+..|+..+--..+ +-.....++.+|..++.....+|+.....+...|.
T Consensus 68 ~~~~~~l~~~---~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 68 QNKLEKLQKE---IEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3444444444 346777888888888888654332 23455567788888888888888766666666553
No 128
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=56.92 E-value=4.2e+02 Score=31.88 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh---c-CCCCcHHHHHHHHHHHHHHHhHHhh
Q 008696 397 LSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH---L-GDEDDAAVQKKMKEMNDELESKIDD 455 (557)
Q Consensus 397 ~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkh---m-~~~~d~~~~~k~~~l~~~L~ek~~e 455 (557)
..||-.|++|..++=.=-+-.-.||++.+-+|- . +.--|.+.+.||+.|..+++.+..+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~ 710 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAE 710 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 446666766665544333333445555555544 2 2234777788888888877776654
No 129
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=56.86 E-value=3.5e+02 Score=30.92 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.6
Q ss_pred HHHhhhhhcCCChhhhhhhcC
Q 008696 185 DFEKAFDADHQGKRHWIARKE 205 (557)
Q Consensus 185 ~fek~Fe~~~~GRkdW~~~~~ 205 (557)
.|-..|.+-++|-.++...+.
T Consensus 108 ~fit~YNAv~R~~~~~~~~~Y 128 (489)
T PF05262_consen 108 TFITIYNAVYRGDLDYFKKKY 128 (489)
T ss_pred HHHHHHHHHHcCCHHHHHHHh
Confidence 356678888888888887653
No 130
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=56.66 E-value=3.7e+02 Score=31.18 Aligned_cols=47 Identities=26% Similarity=0.312 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHH--HHHHHhhhHHHHHhhHHHHH
Q 008696 311 NVRRILEEQEKLSCELETKKKKLDSWSKQ--LNKREALTERERQKLDADRQ 359 (557)
Q Consensus 311 ~~~ri~~e~ekl~~eLe~k~~eL~~r~k~--L~k~~~~~~~er~kL~~e~~ 359 (557)
+++.|..+++.+ +.....+++..+++. =.++.++-+..|+|.+.+++
T Consensus 198 el~~i~~~~q~~--eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~ 246 (591)
T KOG2412|consen 198 ELQAIQREKQRK--EQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAE 246 (591)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777787777653 333333333333332 22344455555666555544
No 131
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=56.55 E-value=6.9 Score=24.35 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=12.3
Q ss_pred eeccCCCCCCcCccccHHHHhhh
Q 008696 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
|.||+|+-. .-...+|.+|-
T Consensus 1 ~~C~~C~~~---~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKS---FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-E---ESSHHHHHHHH
T ss_pred CCCcCCCCc---CCcHHHHHHHH
Confidence 789999733 33566677774
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.10 E-value=83 Score=36.64 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 391 REKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
+|-+....+|-.|++.|..+- .+|++|+++|.-.+.|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~---~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 474 REIRARDRRIERLEKELEEKK---KRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 566677788888888887763 5778888877766644
No 133
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=55.73 E-value=4.6e+02 Score=32.01 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=9.3
Q ss_pred HHhhhhhcCCChhhhhhh
Q 008696 186 FEKAFDADHQGKRHWIAR 203 (557)
Q Consensus 186 fek~Fe~~~~GRkdW~~~ 203 (557)
-+|.+..-+.||.+-..+
T Consensus 46 aeniiqdlrserdalhe~ 63 (1265)
T KOG0976|consen 46 AENIIQDLRSERDALHES 63 (1265)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344555555666555443
No 134
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.12 E-value=2.4e+02 Score=28.17 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=10.9
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhh
Q 008696 253 HVVAHLASKIDMKNEDLSELQCKFNET 279 (557)
Q Consensus 253 ~lv~~L~n~i~~kn~~l~elE~k~~e~ 279 (557)
++++...+.|..-...+..+...+..+
T Consensus 61 qll~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 61 QLLQRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333
No 135
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=54.06 E-value=1.7e+02 Score=34.28 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHH
Q 008696 381 NVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (557)
Q Consensus 381 ~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~ 459 (557)
++...+++.+++.+.+.+++-++-..+..+-....||+++. .+|..|+.+|.++....+.|
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~------------------~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARD------------------RRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777777777777777776666666553 44556666666666555544
No 136
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=54.04 E-value=4.1e+02 Score=30.84 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhh----HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHH
Q 008696 390 KREKEEALSKILQLEKQLD----AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKK 441 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~----~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k 441 (557)
++|...+...|..+-++|| -+..++..++-|...|..|+.+...+-.+...+
T Consensus 175 k~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 175 KAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3455555555555555555 467899999999999999998776655554444
No 137
>PRK04863 mukB cell division protein MukB; Provisional
Probab=53.96 E-value=6.2e+02 Score=32.92 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHhH
Q 008696 437 AVQKKMKEMNDELESKIDDLDEMESLN 463 (557)
Q Consensus 437 ~~~~k~~~l~~~L~ek~~el~~~e~~n 463 (557)
....++.++..+|.+.+.+|..++.-.
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777776555443
No 138
>PLN03120 nucleic acid binding protein; Provisional
Probab=53.22 E-value=22 Score=37.18 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=41.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA 189 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~ 189 (557)
++.|-|++. ..+...|++ |+.|.++.-.-+..+..++|++.|.|.+. .+...|+.|...
T Consensus 6 tVfVgNLs~--------~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~-eaAe~AllLnG~ 65 (260)
T PLN03120 6 TVKVSNVSL--------KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDP-QGAETALLLSGA 65 (260)
T ss_pred EEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcH-HHHHHHHHhcCC
Confidence 467888875 346788999 98887654444444445789999999654 777888866543
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.11 E-value=4.7e+02 Score=31.26 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 008696 81 LALAKYLEV 89 (557)
Q Consensus 81 ~aLak~Le~ 89 (557)
.+|+.|+..
T Consensus 398 ~~L~~fl~~ 406 (717)
T PF10168_consen 398 SALQEFLES 406 (717)
T ss_pred HHHHHHhcc
Confidence 455555554
No 140
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.93 E-value=1.4e+02 Score=27.73 Aligned_cols=46 Identities=24% Similarity=0.456 Sum_probs=26.2
Q ss_pred hhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHH
Q 008696 411 QKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (557)
Q Consensus 411 Q~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li 467 (557)
..|+-+++.|+.+.+.+=-|=| +-.++.+|-..++.||..+..+.|
T Consensus 71 ~~L~~el~~l~~ry~t~LellG-----------EK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLG-----------EKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444433 334556666667777777776665
No 141
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=52.39 E-value=3.2e+02 Score=29.22 Aligned_cols=225 Identities=21% Similarity=0.292 Sum_probs=110.8
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-
Q 008696 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELE- 327 (557)
Q Consensus 249 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe- 327 (557)
.+.++.+..++.+....|..+.+|=....+.....+...++- +.|.++- .--..-++.++.+..+++..+.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev----~elK~kR----~ein~kl~eL~~~~~~l~e~~~~ 101 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEV----QELKEKR----DEINAKLQELRKEYRELKEKRNE 101 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhh
Confidence 466777778888888888877777444444333322222221 1111111 1112222224444444444443
Q ss_pred --HHHhhhHHHHHHHHHHH------hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHH---HHHHHHHHHHHHH
Q 008696 328 --TKKKKLDSWSKQLNKRE------ALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVL---RLVEEQKREKEEA 396 (557)
Q Consensus 328 --~k~~eL~~r~k~L~k~~------~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vl---kLve~hkrEke~~ 396 (557)
..-+.+.+-.+.++.++ ..|..+=++|-+.+..-. ..|+ +.-.+.+..+.+. .=+..-+.+-.++
T Consensus 102 ~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~---k~le-~~~k~~e~~~~~~el~aei~~lk~~~~e~ 177 (294)
T COG1340 102 FNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELR---KELE-DAKKALEENEKLKELKAEIDELKKKAREI 177 (294)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334444444333 233333333333332211 0111 1122222233333 3334445566677
Q ss_pred HHHHHHHHHHhhHHhh----hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHh-
Q 008696 397 LSKILQLEKQLDAKQK----LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKER- 471 (557)
Q Consensus 397 ~~ki~~LekqL~~kQ~----LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker- 471 (557)
|.+|.+|=.|.++-.. +=-++..++-.-.-|.- +-.+..++++++++++.....++.+++..-.+|..+++
T Consensus 178 ~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he----~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~ 253 (294)
T COG1340 178 HEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE----EFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKA 253 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777744332 11223333333333322 23455677888888888888888888877777776544
Q ss_pred ----hccHHHHHHHHHHHHhhh
Q 008696 472 ----QSNDELQEARRELIQGLS 489 (557)
Q Consensus 472 ----~sndELqeARkelI~gl~ 489 (557)
..-++|++-.+++-.-|.
T Consensus 254 ~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 254 AKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 444567766666655554
No 142
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=52.35 E-value=1.7e+02 Score=26.10 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=17.0
Q ss_pred HHHhhHHhhhhhhHHHhhhhHHHHhh
Q 008696 404 EKQLDAKQKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 404 ekqL~~kQ~LELEi~qLkg~L~Vmkh 429 (557)
+.+-..++..+.||.+|+..|..|+.
T Consensus 70 ~~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 70 EEEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777776554
No 143
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=51.70 E-value=5.3e+02 Score=31.44 Aligned_cols=47 Identities=28% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Q 008696 305 QRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERER 351 (557)
Q Consensus 305 Q~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er 351 (557)
|..+..+..+.+...++|-..|++|.+....--+.|.+.+-.-+.||
T Consensus 891 q~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER 937 (1259)
T KOG0163|consen 891 QREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAER 937 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666777777777654444333333333333333333
No 144
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.57 E-value=5.8e+02 Score=31.86 Aligned_cols=117 Identities=22% Similarity=0.284 Sum_probs=71.9
Q ss_pred eeecccCCCCCCCchhhhhhhccCCC-CHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHH
Q 008696 213 GWFARADDNTSEGPIGEYLRQEGKLR-TVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKD 291 (557)
Q Consensus 213 GW~AradD~~~~~~iG~~Lrk~gdLK-Ti~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~ 291 (557)
-++|+..++|+-..=|+...+.|-|. -|-|- ...-+..++| +..-...+.+|+.++++ +++++++.+
T Consensus 631 ~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~-------krsrLe~~k~-~~~~~~~~~~l~~~L~~----~r~~i~~~~ 698 (1200)
T KOG0964|consen 631 LRLAKKHELNCITLSGDQVSKKGVLTGGYEDQ-------KRSRLELLKN-VNESRSELKELQESLDE----VRNEIEDID 698 (1200)
T ss_pred HHHHHhcCCCeEEeccceecccCCccccchhh-------hhhHHHHHhh-hHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 36899999998877888888888876 33332 1222333333 34445566777777776 577777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-------hhHHHHHHHHHHHh
Q 008696 292 RLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK-------KLDSWSKQLNKREA 345 (557)
Q Consensus 292 ~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~-------eL~~r~k~L~k~~~ 345 (557)
+-..+.+-+|++.+ -....+..+++.|+.++-.... .|+-..++|..+.+
T Consensus 699 ~~i~q~~~~~qk~e----~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVE----NDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 77777776665543 2233455566666666655443 34555555555444
No 145
>PLN03121 nucleic acid binding protein; Provisional
Probab=51.45 E-value=25 Score=36.36 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=44.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA 189 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~ 189 (557)
.|++.|-|++.. -+...|++ |+.|.++.-..+..+.+..|++.|.|.. -.+...|+.|...
T Consensus 5 g~TV~V~NLS~~--------tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAllLnGa 66 (243)
T PLN03121 5 GYTAEVTNLSPK--------ATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVLLSGA 66 (243)
T ss_pred ceEEEEecCCCC--------CCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHhcCCC
Confidence 478999999753 36788999 9888886666666667777899999965 4445666665443
No 146
>PRK12704 phosphodiesterase; Provisional
Probab=51.44 E-value=4.2e+02 Score=30.28 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=7.9
Q ss_pred hcCCCCcccEEE
Q 008696 539 LKATEWHPFKII 550 (557)
Q Consensus 539 l~dp~WhPFkvv 550 (557)
+.|--=|||++-
T Consensus 274 ~~dg~i~P~~ie 285 (520)
T PRK12704 274 VQDGRIHPARIE 285 (520)
T ss_pred HhcCCcCCCCHH
Confidence 556677787653
No 147
>PRK01156 chromosome segregation protein; Provisional
Probab=51.15 E-value=5.1e+02 Score=31.09 Aligned_cols=15 Identities=7% Similarity=-0.199 Sum_probs=5.9
Q ss_pred HHHHHhhhHHHHHHH
Q 008696 326 LETKKKKLDSWSKQL 340 (557)
Q Consensus 326 Le~k~~eL~~r~k~L 340 (557)
|+++.++|+..-.++
T Consensus 261 le~~l~el~~~~~el 275 (895)
T PRK01156 261 AESDLSMELEKNNYY 275 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444443333333
No 148
>PTZ00332 paraflagellar rod protein; Provisional
Probab=51.14 E-value=4.4e+02 Score=30.37 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=79.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 008696 282 SLSRMLEEKDRLHYAFVEETRKMQRLA-----------------RDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKRE 344 (557)
Q Consensus 282 sL~r~meEk~~l~~~yneE~~kmQ~~a-----------------~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~ 344 (557)
-..-|.+-|..+.+++.+.+.++|... +..+.+.|++|+.-+.+-=+++.+|+.+-..|.
T Consensus 261 e~sa~~daK~R~~~~CE~Dl~~i~d~iq~~~~eDa~~~KRy~a~k~~Se~f~~~N~e~Qe~~wnrI~eLer~Lq~l~--- 337 (589)
T PTZ00332 261 ETSQMKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAMKRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRLG--- 337 (589)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---
Confidence 344455667788888888888777652 344778888888877777778888877655555
Q ss_pred hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 008696 345 ALTERERQKLDADRQQNDLRNNSLQLASMEQKK--ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKG 422 (557)
Q Consensus 345 ~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~k--ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg 422 (557)
.+|.+.-+.+ |++...|.++ +-+..+..+..|+ |.|++-|.-.-+
T Consensus 338 ----~eR~~eV~rR---------Ie~~~rEekRr~~yeqFl~~asQHk--------------------qrL~~tv~Ncd~ 384 (589)
T PTZ00332 338 ----TERFEEVKRR---------IEENDREEKRRVEYQQFLEVAGQHK--------------------KLLELTVYNCDL 384 (589)
T ss_pred ----HHHHHHHHHH---------HHHHHHHHHhHhHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 2333222111 1122222222 3344555555555 577777777777
Q ss_pred hHHHHhhcCC---CCcHHHHHHHHHHHHHHHhH
Q 008696 423 KLEVMKHLGD---EDDAAVQKKMKEMNDELESK 452 (557)
Q Consensus 423 ~L~Vmkhm~~---~~d~~~~~k~~~l~~~L~ek 452 (557)
-+.+.-.|++ +.-..|+.+.+.+...|.+.
T Consensus 385 a~~~~~~lee~V~egc~~i~~r~DK~~q~L~el 417 (589)
T PTZ00332 385 ALRCTGLVEELVSEGCAAVKARHDKTNQDLAAL 417 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 7776666543 33345566666666555443
No 149
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=51.14 E-value=2.5e+02 Score=27.46 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=66.8
Q ss_pred eecccCCCCCCCchh--hhhhhccCCCCHHHHHHHhhh--hHhHHHHHHHhHHHhhh-hhHHHHHHHhhhhhHHHHhHHH
Q 008696 214 WFARADDNTSEGPIG--EYLRQEGKLRTVSDIVQEDAQ--SKIHVVAHLASKIDMKN-EDLSELQCKFNETTMSLSRMLE 288 (557)
Q Consensus 214 W~AradD~~~~~~iG--~~Lrk~gdLKTi~ei~~E~~r--k~~~lv~~L~n~i~~kn-~~l~elE~k~~e~t~sL~r~me 288 (557)
|++.+++..+.+..+ -|||-.+-|-+...|..-+.+ +...+=..+..+|+.+. +.-.+.+...-+--.--.|+-.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~r 94 (157)
T PF15236_consen 15 NLGKASRVTSMQSSSKTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAR 94 (157)
T ss_pred hhcccccccccccccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566777777666555 899988888888887765554 33334445555665554 3444555555566666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008696 289 EKDRLHYAFVEETRKMQRLARDN 311 (557)
Q Consensus 289 Ek~~l~~~yneE~~kmQ~~a~~~ 311 (557)
++..|...|-+|..++.++--..
T Consensus 95 ere~~q~~~E~E~~~~~~KEe~~ 117 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREKEEEQ 117 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998877664443
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.59 E-value=2.6e+02 Score=29.73 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=4.9
Q ss_pred ccccccCCCCChh
Q 008696 498 IGVKRLGEIDPKP 510 (557)
Q Consensus 498 IgiKrmGeld~kp 510 (557)
|-==|+|-|...|
T Consensus 153 INGlRLGrl~~~~ 165 (314)
T PF04111_consen 153 INGLRLGRLPNVP 165 (314)
T ss_dssp ETTEEE--BTTB-
T ss_pred ECCeeeccCCCCC
Confidence 3334666655444
No 151
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.11 E-value=5.4e+02 Score=31.15 Aligned_cols=35 Identities=37% Similarity=0.502 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhh
Q 008696 388 EQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKG 422 (557)
Q Consensus 388 ~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg 422 (557)
+-.++-+.+...+..++.++......++.+.+|.|
T Consensus 421 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (908)
T COG0419 421 ELERELEELEEEIKKLEEQINQLESKELMIAELAG 455 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555554443445555544
No 152
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=49.60 E-value=2.8e+02 Score=27.75 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhH----HHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHH
Q 008696 311 NVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTE----RERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLV 386 (557)
Q Consensus 311 ~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~----~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLv 386 (557)
+..++..........|+.-++..+..|.+++....++. .+-.|++ ..+.-|..+-.+++.++...|
T Consensus 108 ~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~----------~k~~k~~~~~~~~~~~Y~~~v 177 (236)
T cd07651 108 HMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNN----------AKLNKAQSSINSSRRDYQNAV 177 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566677777888888888876655422 1222222 224456666667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHhhhhHH
Q 008696 387 EEQKREKEEALSKILQLEKQLDAKQKLEME-IEDLKGKLE 425 (557)
Q Consensus 387 e~hkrEke~~~~ki~~LekqL~~kQ~LELE-i~qLkg~L~ 425 (557)
+...+=+......+ ..-++.=|.||-+ |+.|+..|.
T Consensus 178 ~~~~~~~~~~~~~~---~~~~~~~Q~lEe~Ri~~lk~~l~ 214 (236)
T cd07651 178 KALRELNEIWNREW---KAALDDFQDLEEERIQFLKSNCW 214 (236)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765444333332 2334444444433 555665444
No 153
>PTZ00464 SNF-7-like protein; Provisional
Probab=49.02 E-value=3e+02 Score=27.86 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=13.3
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHH
Q 008696 326 LETKKKKLDSWSKQLNKREALTERE 350 (557)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~e 350 (557)
+......|+.|...|+++...-+.+
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E 40 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAE 40 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666665433333
No 154
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.14 E-value=3.7e+02 Score=28.58 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=13.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHhhH
Q 008696 325 ELETKKKKLDSWSKQLNKREALTERERQKLD 355 (557)
Q Consensus 325 eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~ 355 (557)
.|++|..=.+=|.+-++-+...-+.....|.
T Consensus 132 Rl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~ 162 (325)
T PF08317_consen 132 RLEAKKMWYEWRMQLLEGLKEGLEENLELLQ 162 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333333333
No 155
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.93 E-value=4.5e+02 Score=29.71 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHH------HHHHH--------
Q 008696 240 VSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE------TRKMQ-------- 305 (557)
Q Consensus 240 i~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE------~~kmQ-------- 305 (557)
|.-+.++...|.+.|-.-=...|+..|.-=|+-|.-.|..--.++++-.|++-|...|.++ ++++-
T Consensus 167 i~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD 246 (552)
T KOG2129|consen 167 IRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGD 246 (552)
T ss_pred HHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCc
Confidence 3333444444444333333344455555555555566666666666667777777777554 23322
Q ss_pred --HHHHHHHHHHHHHHHHhhHHHHHH
Q 008696 306 --RLARDNVRRILEEQEKLSCELETK 329 (557)
Q Consensus 306 --~~a~~~~~ri~~e~ekl~~eLe~k 329 (557)
..-..|++++-.|.++||..|-+-
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~A 272 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRA 272 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345555566666776666543
No 156
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.80 E-value=6.7e+02 Score=31.50 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=47.7
Q ss_pred hhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHH
Q 008696 407 LDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQ 486 (557)
Q Consensus 407 L~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~ 486 (557)
+.-.+.||-.|.+|++.+ +.- ..--..+.-+|.++...+.+...++..++...-.+.-+.-..|+||++.+-.|-.
T Consensus 401 ~~~~~elE~r~k~l~~sv--er~--~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 401 LERRAELEARIKQLKESV--ERL--DKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 334556666666666655 111 0111234456677777777777777777777777777777778888777766543
No 157
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=47.77 E-value=5.2e+02 Score=30.23 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=36.3
Q ss_pred hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH
Q 008696 249 QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV 298 (557)
Q Consensus 249 rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yn 298 (557)
+.....|..|..+|+.....++.+...+.++...+..+..++..+.+.|.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888877777777777766665544443
No 158
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=47.00 E-value=3.3e+02 Score=27.81 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008696 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (557)
Q Consensus 288 eEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k 329 (557)
++-.++++.|-++|..=...++..+-+++-.+..+..+|+.-
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455588888888888888888998888887776665555433
No 159
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.68 E-value=3.8e+02 Score=28.31 Aligned_cols=120 Identities=16% Similarity=0.292 Sum_probs=75.3
Q ss_pred hhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 232 RQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN 311 (557)
Q Consensus 232 rk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~ 311 (557)
.|.+|||.+..+..+-...--.|.+-|...++.+......+-.-.... .+.+.+. ....+-..++. ..+..
T Consensus 114 ~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~--~iE~~l~---~ai~~~~~~~~----~~~~~ 184 (267)
T PF10234_consen 114 SKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELN--EIEKALK---EAIKAVQQQLQ----QTQQQ 184 (267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHH--HHHHHHH---HHHHHHHHHHH----HHHHH
Confidence 446799999988888888888888888888777776666653111111 0111111 11222222222 23334
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHH---HHHhhHHHHHh
Q 008696 312 VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTER---ERQKLDADRQQ 360 (557)
Q Consensus 312 ~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~---er~kL~~e~~k 360 (557)
...+-.+...|...++-++.|||.-.|.|.-++.-.+. |..+|+.|.++
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 44555666778888888999999999999988866553 55566666554
No 160
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=46.62 E-value=5.5e+02 Score=30.22 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHh
Q 008696 391 REKEEALSKILQLEKQLDAKQ 411 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ 411 (557)
.+.+.--+.|-.||++|.++-
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKI 330 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466667778888888888764
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.50 E-value=2.6e+02 Score=26.09 Aligned_cols=99 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHH
Q 008696 296 AFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQ 375 (557)
Q Consensus 296 ~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq 375 (557)
.+.|.+..-....+....+.-..+++|+.+++...+++..-......+..........+..+++. ++.+.-
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee---------~~klk~ 122 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE---------LQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHH
Q 008696 376 KKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLE 425 (557)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~ 425 (557)
.-++-..---+|-.++ |.||..|+.+|.
T Consensus 123 ~~~~~~tq~~~e~rkk----------------------e~E~~kLk~rL~ 150 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKK----------------------EREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHhc
No 162
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=45.06 E-value=2.8e+02 Score=26.41 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=45.1
Q ss_pred HHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHH---HHHHHHHHHHHHHHHHH
Q 008696 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLE---EKDRLHYAFVEETRKMQ 305 (557)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~me---Ek~~l~~~yneE~~kmQ 305 (557)
.+......+..++-|..|.+.+..-.........-...+..+++.... .++....+|.+++++|.
T Consensus 24 ~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 24 QDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH
Confidence 444555566666667777777666666666666666666666666653 45678899999999998
No 163
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.94 E-value=5e+02 Score=29.21 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=17.0
Q ss_pred hhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHh
Q 008696 414 EMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELES 451 (557)
Q Consensus 414 ELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~e 451 (557)
+-++....-+|+..+. ....+++.|..+......
T Consensus 216 ~~~l~~~q~~l~eL~~----~~~~L~~~Ias~e~~aA~ 249 (420)
T COG4942 216 NSELSADQKKLEELRA----NESRLKNEIASAEAAAAK 249 (420)
T ss_pred HHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHH
Confidence 3344444444444443 234666667666655443
No 164
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=44.76 E-value=1e+02 Score=29.05 Aligned_cols=86 Identities=29% Similarity=0.403 Sum_probs=52.2
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008696 320 EKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSK 399 (557)
Q Consensus 320 ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~k 399 (557)
+++..+|.++...+|.-+.||+- +-+++..|.++.. .-+.+.+. ..=..|+...+.+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLef-------q~kr~~~e~~~~~----~~~~~~i~------------~q~~~e~~~r~e~ 75 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEF-------QGKRMIKEIKKQN----AQQIQSIQ------------QQFEQEKQERLEQ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTS----SHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc----hhhHHHHH------------HHHHHHHHHHHHH
Confidence 45566777777777777777764 3334444433221 11222222 2223667778888
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHh
Q 008696 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMK 428 (557)
Q Consensus 400 i~~LekqL~~kQ~LELEi~qLkg~L~Vmk 428 (557)
+-+|..||.+=+.|+|.-+=..|+++-+=
T Consensus 76 k~~l~~ql~qv~~L~lgsEv~qg~vE~~v 104 (131)
T PF11068_consen 76 KNQLLQQLEQVQKLELGSEVVQGQVESFV 104 (131)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEeeeeeEEEE
Confidence 99999999999999998776667665433
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.23 E-value=3e+02 Score=27.73 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhH
Q 008696 312 VRRILEEQEKLSCELETKKKKLD 334 (557)
Q Consensus 312 ~~ri~~e~ekl~~eLe~k~~eL~ 334 (557)
+..+-.+|.+|+.+|+.-..+++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355666666666665444433
No 166
>PRK12705 hypothetical protein; Provisional
Probab=43.05 E-value=5.7e+02 Score=29.36 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=31.5
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHH
Q 008696 326 LETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQK 390 (557)
Q Consensus 326 Le~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hk 390 (557)
|+.+...|+.+..+|++.+..-......|+...+ .....--..|.+-+..|.+.+++-+++.-
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~--~~~~~Le~ia~lt~~eak~~l~~~~~~~~ 155 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSARELELEELEK--QLDNELYRVAGLTPEQARKLLLKLLDAEL 155 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4555555555555555544333333333332211 11122223466666668888888887654
No 167
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=42.98 E-value=3.2e+02 Score=26.51 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 008696 342 KREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALS 398 (557)
Q Consensus 342 k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ 398 (557)
++.+..+.+|..++.+..+ .++| -+.++.+.++.-++++++.+-
T Consensus 88 ~~~a~~~~~~~~~ea~L~~-----------~~~~--~~~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 88 SLESEFLIKKKNLEQDLKN-----------SINQ--NIEDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHhHHHHHH
Confidence 4445555555555555442 3344 344566666666666665543
No 168
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=42.87 E-value=5.9e+02 Score=29.49 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=11.2
Q ss_pred HHhHHHHHHHHhhccHHHHHHHH
Q 008696 460 ESLNKTLIAKERQSNDELQEARR 482 (557)
Q Consensus 460 e~~nq~Li~ker~sndELqeARk 482 (557)
++-+..++--+-++-.||+.+|-
T Consensus 281 eDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 281 EDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333334334455566666664
No 169
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=42.72 E-value=13 Score=23.62 Aligned_cols=20 Identities=25% Similarity=0.650 Sum_probs=13.4
Q ss_pred eeccCCCCCCcCccccHHHHhhh
Q 008696 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
|.||.|... ...-..|.+|-
T Consensus 1 y~C~~C~~~---f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKS---FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCCCc---cCCHHHHHHHH
Confidence 789999733 34456677773
No 170
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=41.71 E-value=6.9e+02 Score=29.96 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=20.1
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHH
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRML 287 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~m 287 (557)
.+.|+-|-.++..|...++.|-..+.++.-..+.+-
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLe 274 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLE 274 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665555555555544444333
No 171
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.35 E-value=26 Score=23.75 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q 008696 391 REKEEALSKILQLEKQLDA 409 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~ 409 (557)
+|.+.+.++|..||+||..
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 3677888999999999974
No 172
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.06 E-value=3.2e+02 Score=28.48 Aligned_cols=64 Identities=25% Similarity=0.303 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHH
Q 008696 386 VEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDEL 449 (557)
Q Consensus 386 ve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L 449 (557)
.++-..||+++++.+-+||-++.+-|.-=-+++-=+.+|+-|-..--++-.+++++.++|...+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3445578999999999999988887753222222233344333322234556666666665544
No 173
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=40.16 E-value=56 Score=30.64 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=38.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCcee-eeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv-~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.+.|-|++. ..+...|++ |..|.++.. ....+. .-+.|+++|.|.+. ..-..|+.
T Consensus 36 ~lfVgnL~~--------~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSW--------GTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCC--------CCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 456788875 347788999 999987544 444443 34789999999865 56666664
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.09 E-value=7.2e+02 Score=29.71 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=33.2
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhh
Q 008696 267 EDLSELQCKFNETTMSLSRMLEEKDRL---HYAFVEETRKMQRLARDN---VRRILEEQEKLSCELETKKKK 332 (557)
Q Consensus 267 ~~l~elE~k~~e~t~sL~r~meEk~~l---~~~yneE~~kmQ~~a~~~---~~ri~~e~ekl~~eLe~k~~e 332 (557)
.|+...+--..+....+.....+++++ +....+++..++..|..- ..+|.+-+++|..-++.-++.
T Consensus 551 eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 551 EYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556655555555555533 344555566666665333 444444444444444443333
No 175
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=39.87 E-value=61 Score=27.64 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHh
Q 008696 304 MQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA 345 (557)
Q Consensus 304 mQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~ 345 (557)
+++.+-.....++.+|-.|+.++++-.++|....+.|.+.+.
T Consensus 30 l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 30 LQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778889999999999999999999999999988665
No 176
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.68 E-value=4.3e+02 Score=27.01 Aligned_cols=47 Identities=9% Similarity=0.270 Sum_probs=34.1
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHH
Q 008696 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE 300 (557)
Q Consensus 254 lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE 300 (557)
.++-+.+-...-++++.+++.-+......+-.+|.....++..|++-
T Consensus 18 ~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 18 LLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455677888888888888888888888888887777664
No 177
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=39.32 E-value=1.1e+02 Score=26.93 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=41.9
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 008696 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETR 302 (557)
Q Consensus 254 lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~ 302 (557)
-.+.+-.++..-|-.|..||.+..-....|+.+++.+++.+..|.++..
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566778888888999999999999999999999999988888877654
No 178
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.25 E-value=5.6e+02 Score=30.10 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=44.7
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN 311 (557)
Q Consensus 253 ~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~ 311 (557)
.+++.|..++......+.++...|....-.+..+-.+...+.....+|+.++.......
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~ 346 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQ 346 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777778788888888888887888888888888888876655433
No 179
>smart00400 ZnF_CHCC zinc finger.
Probab=39.14 E-value=54 Score=25.67 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=27.0
Q ss_pred HhcCCeEee-cCCeeeccCCCCCCcCccccHHHHhhhccC
Q 008696 27 LRAGKYKVR-VNGTLRCPFCSGKKKQDYKHKDLLQHASGV 65 (557)
Q Consensus 27 Lk~g~~kVk-~~~~~~CP~C~gkkk~~y~~~~LLqHA~gv 65 (557)
=++.++.|+ ..+.|+|=.|..+ .+.=+|+++-.|+
T Consensus 10 d~~pSf~v~~~kn~~~Cf~cg~g----Gd~i~fv~~~~~~ 45 (55)
T smart00400 10 EKTPSFSVSPDKQFFHCFGCGAG----GNVISFLMKYDKL 45 (55)
T ss_pred CCCCCEEEECCCCEEEEeCCCCC----CCHHHHHHHHHCc
Confidence 356678899 7789999999633 4677888888775
No 180
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.11 E-value=4.6e+02 Score=27.11 Aligned_cols=142 Identities=23% Similarity=0.326 Sum_probs=81.1
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhhhH
Q 008696 258 LASKIDMKNEDLSELQCKFNETTMSLSRML--EEKDRLHYAFVEETRKMQRLARDNVRRILEEQE-KLSCELETKKKKLD 334 (557)
Q Consensus 258 L~n~i~~kn~~l~elE~k~~e~t~sL~r~m--eEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~e-kl~~eLe~k~~eL~ 334 (557)
|-..|+..-+.+.+-=..|+.+..++...- .+|+++..--..||+|+|+. |+.+.--+..++ |=+..|..-++-++
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~-RdQIK~W~~~~diKdk~~L~e~Rk~IE 84 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRL-RDQIKTWLSSNDIKDKKKLLENRKLIE 84 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHccCcccccHHHHHHHHHHHH
Confidence 345666677777776667777766666533 46889999999999999963 554433332211 11223444444444
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 008696 335 SWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLAS--MEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK 412 (557)
Q Consensus 335 ~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~--~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 412 (557)
.+.. .++-++.+.+-.+--+..|..|+ -.+.++..++.. =+-+-|-+|..|.+ .
T Consensus 85 ~~ME-----------rFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~----------wl~~~Id~L~~QiE---~ 140 (233)
T PF04065_consen 85 EQME-----------RFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARD----------WLKDSIDELNRQIE---Q 140 (233)
T ss_pred HHHH-----------HHHHHHHHhcccccchhhhhcccccCcchHHHHHHHH----------HHHHHHHHHHHHHH---H
Confidence 4333 23344555555555566666654 111112222222 23456778888876 6
Q ss_pred hhhhHHHhhhhH
Q 008696 413 LEMEIEDLKGKL 424 (557)
Q Consensus 413 LELEi~qLkg~L 424 (557)
+|.||+.|.++.
T Consensus 141 ~E~E~E~L~~~~ 152 (233)
T PF04065_consen 141 LEAEIESLSSQK 152 (233)
T ss_pred HHHHHHHHHHhh
Confidence 888888887653
No 181
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=39.00 E-value=21 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=11.1
Q ss_pred Eee-cCCeeeccCCCC
Q 008696 33 KVR-VNGTLRCPFCSG 47 (557)
Q Consensus 33 kVk-~~~~~~CP~C~g 47 (557)
+|. .+.+|.||||..
T Consensus 17 ~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 17 QFDDGGKTWICNFCGT 32 (40)
T ss_dssp EEETTTTEEEETTT--
T ss_pred eEcCCCCEEECcCCCC
Confidence 566 678999999974
No 182
>PLN03188 kinesin-12 family protein; Provisional
Probab=38.57 E-value=6.7e+02 Score=32.06 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=25.8
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHH
Q 008696 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFV 298 (557)
Q Consensus 251 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yn 298 (557)
...+...|.-.++...+...+|..-..-.-.--.||+|+--.|.+.|+
T Consensus 1077 ~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~ 1124 (1320)
T PLN03188 1077 SRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHI 1124 (1320)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665555444444444555555444444444
No 183
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.31 E-value=4.8e+02 Score=27.12 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=5.2
Q ss_pred HhhHHHHHHHhhhH
Q 008696 321 KLSCELETKKKKLD 334 (557)
Q Consensus 321 kl~~eLe~k~~eL~ 334 (557)
+++.+++.-.+.+.
T Consensus 35 k~~~e~e~~~~~~~ 48 (239)
T COG1579 35 KAKAELEALNKALE 48 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 184
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=38.17 E-value=22 Score=27.00 Aligned_cols=17 Identities=24% Similarity=0.784 Sum_probs=11.2
Q ss_pred eEee-cCCeeeccCCCCC
Q 008696 32 YKVR-VNGTLRCPFCSGK 48 (557)
Q Consensus 32 ~kVk-~~~~~~CP~C~gk 48 (557)
+.+. ....++||+|.+.
T Consensus 13 ~~~~~~~~~~~Cp~CG~~ 30 (46)
T PRK00398 13 VELDEYGTGVRCPYCGYR 30 (46)
T ss_pred EEECCCCCceECCCCCCe
Confidence 3444 3347999999744
No 185
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.12 E-value=4e+02 Score=26.18 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHH
Q 008696 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARREL 484 (557)
Q Consensus 437 ~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkel 484 (557)
.+..+++.|..++.....++..++.=-++|+ .=+..||+-.
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~-------~Im~RARkl~ 155 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLI-------DIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3445566666666666666666655556665 3355566543
No 186
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=37.62 E-value=15 Score=29.16 Aligned_cols=11 Identities=45% Similarity=1.213 Sum_probs=7.8
Q ss_pred eeeccCCCCCCc
Q 008696 39 TLRCPFCSGKKK 50 (557)
Q Consensus 39 ~~~CP~C~gkkk 50 (557)
...|||| |.+.
T Consensus 3 LkPCPFC-G~~~ 13 (61)
T PF14354_consen 3 LKPCPFC-GSAD 13 (61)
T ss_pred CcCCCCC-CCcc
Confidence 3579999 6654
No 187
>PLN02678 seryl-tRNA synthetase
Probab=37.60 E-value=2.3e+02 Score=31.79 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=35.5
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCcccc--------cccccC
Q 008696 433 EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNI--------GVKRLG 504 (557)
Q Consensus 433 ~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~~~I--------giKrmG 504 (557)
++-++++.++.+|.+++...+.++. ++++...++...|..++.....| =|++.|
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~------------------~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g 132 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQ------------------EAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWG 132 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEc
Confidence 4456777778888888777777763 45566666777777665433333 367777
Q ss_pred C
Q 008696 505 E 505 (557)
Q Consensus 505 e 505 (557)
.
T Consensus 133 ~ 133 (448)
T PLN02678 133 E 133 (448)
T ss_pred C
Confidence 4
No 188
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=37.52 E-value=4.2e+02 Score=26.20 Aligned_cols=39 Identities=23% Similarity=0.518 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHhhhH
Q 008696 296 AFVEETRKMQRLAR-----------DNVRRILEEQEKLSCELETKKKKLD 334 (557)
Q Consensus 296 ~yneE~~kmQ~~a~-----------~~~~ri~~e~ekl~~eLe~k~~eL~ 334 (557)
.|++++..+...+. .+.+.+..||..|+.-|+.--..|+
T Consensus 45 ~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~ale 94 (181)
T PF05769_consen 45 QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSALE 94 (181)
T ss_pred HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544 2334445566666655555444443
No 189
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=37.50 E-value=11 Score=45.19 Aligned_cols=78 Identities=28% Similarity=0.325 Sum_probs=0.0
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Q 008696 280 TMSLSRMLEEKDRLHYAFVEETRKMQRLARDN-------VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQ 352 (557)
Q Consensus 280 t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~-------~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~ 352 (557)
-.+|++.+++-..-|++--.+|++=+..+-.. .++.-..-+|-+..|+....+|......+.+--+.++.-++
T Consensus 104 l~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K 183 (859)
T PF01576_consen 104 LAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK 183 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 34566666665555555555555544444333 23333333444444444444444444444444444444445
Q ss_pred hhHHH
Q 008696 353 KLDAD 357 (557)
Q Consensus 353 kL~~e 357 (557)
+|+..
T Consensus 184 ~lE~q 188 (859)
T PF01576_consen 184 QLEAQ 188 (859)
T ss_dssp -----
T ss_pred hHHHH
Confidence 55444
No 190
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.47 E-value=1.8e+02 Score=23.80 Aligned_cols=53 Identities=38% Similarity=0.498 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHhhhhHHH---HhhcCCCCcHHHHHHHHHHHHHHHhHH
Q 008696 398 SKILQLEKQLDAKQKLEMEIEDLKGKLEV---MKHLGDEDDAAVQKKMKEMNDELESKI 453 (557)
Q Consensus 398 ~ki~~LekqL~~kQ~LELEi~qLkg~L~V---mkhm~~~~d~~~~~k~~~l~~~L~ek~ 453 (557)
+.|.+|+++|. +|+-+|+.+.++|.- +..-|.+--..-+.++.++..++.--.
T Consensus 4 ~E~~rL~Kel~---kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~ 59 (66)
T PF10458_consen 4 AEIERLEKELE---KLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLE 59 (66)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777775 788888999999863 334454433444445555554444333
No 191
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=37.46 E-value=6.1e+02 Score=28.09 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 008696 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKK 330 (557)
Q Consensus 251 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~ 330 (557)
++..|..|...+..-...-.-+-+-+-...-+-++++.+-+.=.+++..... ..-+-..-+-.+.+.|..+||=.+
T Consensus 84 t~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaa----eGDDlt~~LEKEReqL~QQiEFe~ 159 (561)
T KOG1103|consen 84 TESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAA----EGDDLTAHLEKEREQLQQQIEFEI 159 (561)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----ccchHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhh-hchhHhhHHHHHHhhHHHHHHHHHHHH----------HHHHHHHH
Q 008696 331 KKLDSWSKQLNKREALTERERQKLDADRQQNDLR-NNSLQLASMEQKKADENVLRLVEEQKR----------EKEEALSK 399 (557)
Q Consensus 331 ~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~-~~~l~lA~~Eq~kade~vlkLve~hkr----------Eke~~~~k 399 (557)
.+-.--.+.-+|++-+-+.+|..-++---.-..+ ...+..|..+-+||.+=+|+|-.+.-| |.+.-+.-
T Consensus 160 ~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqt 239 (561)
T KOG1103|consen 160 EEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQT 239 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccch
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHH
Q 008696 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (557)
Q Consensus 400 i~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~ 459 (557)
-.|.||++.+ +..|.++|+..|+-...-.- -+|..|..|++...+.+.++..+
T Consensus 240 eaqvek~i~E---fdiEre~LRAel~ree~r~K----~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 240 EAQVEKLIEE---FDIEREFLRAELEREEKRQK----MLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhhc
No 192
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=36.83 E-value=2.4e+02 Score=33.02 Aligned_cols=46 Identities=33% Similarity=0.476 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 008696 381 NVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 381 ~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkh 429 (557)
...+.+++++|=++-+.-.+.+||- .+|+|.-||++++-+.+-.|.
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~---krqel~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEV---KRQELNSEIEEINTKIEELKR 121 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHH
Confidence 4567789999999999989988875 369999999998877664444
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.62 E-value=95 Score=32.10 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=22.6
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhh
Q 008696 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 400 i~~LekqL~~kQ~LELEi~qLkg~L~Vmkh 429 (557)
+++|..||+ .|..||.+|+|+++++-|
T Consensus 56 ~~~l~~ql~---~lq~ev~~LrG~~E~~~~ 82 (263)
T PRK10803 56 LTQLQQQLS---DNQSDIDSLRGQIQENQY 82 (263)
T ss_pred HHHHHHHHH---HHHHHHHHHhhHHHHHHH
Confidence 567777776 577899999999999888
No 194
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.43 E-value=7.4e+02 Score=28.78 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhcCCCCccc
Q 008696 528 ASTLCSLWQENLKATEWHPF 547 (557)
Q Consensus 528 a~~lcs~Wq~~l~dp~WhPF 547 (557)
-|.+++.+.. ...+.||
T Consensus 562 la~~~al~~~---~~~~~p~ 578 (650)
T TIGR03185 562 IALLWGLAKV---SGRRLPV 578 (650)
T ss_pred HHHHHHHHHh---cCCCCCE
Confidence 4556677763 3456787
No 195
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.16 E-value=7.1e+02 Score=28.46 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhHHHHH-----HHhhhHHHHHHHHHHHhhhHHHHHhhHHH
Q 008696 311 NVRRILEEQEKLSCELET-----KKKKLDSWSKQLNKREALTERERQKLDAD 357 (557)
Q Consensus 311 ~~~ri~~e~ekl~~eLe~-----k~~eL~~r~k~L~k~~~~~~~er~kL~~e 357 (557)
..++-.+.+.+|+++|+. .+..+..|.+++..--..-+.|-.|...|
T Consensus 360 ei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~e 411 (521)
T KOG1937|consen 360 EIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEE 411 (521)
T ss_pred HHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444889999999986 47889999999987776666666666554
No 196
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=35.69 E-value=6.6e+02 Score=29.05 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=57.0
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHH--------hhhHHHHHhhHHHHHhhhhhh--------chhHhhHHHHHHh
Q 008696 315 ILEEQEKLSCELETKKKKLDSWSKQLNKRE--------ALTERERQKLDADRQQNDLRN--------NSLQLASMEQKKA 378 (557)
Q Consensus 315 i~~e~ekl~~eLe~k~~eL~~r~k~L~k~~--------~~~~~er~kL~~e~~kn~~~~--------~~l~lA~~Eq~ka 378 (557)
.|.+.-|-...+-+++.++++-.+-|.|+. +.+++--.+-..-+--|-.+| ..|.+|.--.
T Consensus 331 AFqnl~KqqE~iN~qReeIerqrklLaKRKPp~~gkvqap~~~ne~kqrkskntNGaenifrrpeep~~ltlaEYhE--- 407 (775)
T KOG1151|consen 331 AFQNLIKQQERINSQREEIERQRKLLAKRKPPAMGKVQAPPATNEQKQRKSKNTNGAENIFRRPEEPETLTLAEYHE--- 407 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCCccccccccccCCCcccccccCCCCcccccHHHHHh---
Confidence 356666777778888999999999888764 222221111111111133334 5677775433
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhh
Q 008696 379 DENVLRLVEEQ-KREKEEALSKILQLEKQLDAKQKLEMEIEDLK 421 (557)
Q Consensus 379 de~vlkLve~h-krEke~~~~ki~~LekqL~~kQ~LELEi~qLk 421 (557)
.|++.||--.| ++|--++...+..||+.- .|-|.+||
T Consensus 408 qeEIfKLRlgHLkKEEaeiqaElERLErvr------nlHiRELK 445 (775)
T KOG1151|consen 408 QEEIFKLRLGHLKKEEAEIQAELERLERVR------NLHIRELK 445 (775)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 47788887777 445556666676676532 34455555
No 197
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.55 E-value=6.7e+02 Score=28.03 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHH
Q 008696 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEV 426 (557)
Q Consensus 396 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~V 426 (557)
+.++---|+|+|++|+ -|.+||++++.|
T Consensus 354 Lrkerd~L~keLeekk---releql~~q~~v 381 (442)
T PF06637_consen 354 LRKERDSLAKELEEKK---RELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 3333344445554442 345555555554
No 198
>PTZ00491 major vault protein; Provisional
Probab=35.19 E-value=6.2e+02 Score=30.96 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=18.8
Q ss_pred hHHHhhhhhHHHHHHHhhhhhHHHHhHH
Q 008696 260 SKIDMKNEDLSELQCKFNETTMSLSRML 287 (557)
Q Consensus 260 n~i~~kn~~l~elE~k~~e~t~sL~r~m 287 (557)
|-+...+-+++.+|..=..|..+|++-.
T Consensus 626 N~lvit~VDvqsvEpvD~~tr~~LqkSV 653 (850)
T PTZ00491 626 NNLVITNVDVQSVEPVDERTRDSLQKSV 653 (850)
T ss_pred CCeEEEEEeeeeeeecCHHHHHHHHHHH
Confidence 4455666677777777777777776554
No 199
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=35.08 E-value=33 Score=30.44 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=27.2
Q ss_pred eEEEEeccccccCCccccCChhhHhhhcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
+.+|.|.|+..+-. . --..|+.|+.=|+++|-.+- .|.|||.|.+-
T Consensus 4 ~L~V~NLP~~~d~~-~---I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~ 49 (90)
T PF11608_consen 4 LLYVSNLPTNKDPS-S---IKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQ 49 (90)
T ss_dssp EEEEES--TTS-HH-H---HHHHHHHHHHTTT--EEE-------TT-EEEEESSH
T ss_pred EEEEecCCCCCCHH-H---HHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCH
Confidence 46789999866421 1 23566668889999999984 27899999874
No 200
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=34.47 E-value=64 Score=35.89 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred eeecce--EEEEeccccccCCccccCChhhHhh-hcccCC---ceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhh
Q 008696 117 YVWPWM--GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP---VEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAF 190 (557)
Q Consensus 117 iVWPwm--gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p---~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~F 190 (557)
.++||. ..|-|+|.. .+...|++ |+.|.. ..++.+-...+.+|+++|+|.+--.- ..|+..=+++
T Consensus 389 ~~~~ps~~L~v~NLp~~--------~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~~ 459 (481)
T TIGR01649 389 NIQPPSATLHLSNIPLS--------VSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNHH 459 (481)
T ss_pred ccCCCCcEEEEecCCCC--------CCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcCC
Confidence 457885 456688753 36778999 998874 44555445556689999999984443 3555544455
Q ss_pred hhcC
Q 008696 191 DADH 194 (557)
Q Consensus 191 e~~~ 194 (557)
...+
T Consensus 460 ~l~~ 463 (481)
T TIGR01649 460 QLNE 463 (481)
T ss_pred ccCC
Confidence 4443
No 201
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=34.44 E-value=53 Score=34.00 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=52.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hccc-CCceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHhhhhhcCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVF-KPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEKAFDADHQ 195 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F-~p~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~fek~Fe~~~~ 195 (557)
=.++|-|.++ |.....|++ |..| .+.+|-.=|++.| ..|++-|.|...-.++.--..|+. |..+|.
T Consensus 84 ~~v~v~NL~~--------~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~ 152 (243)
T KOG0533|consen 84 TKVNVSNLPY--------GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDGR 152 (243)
T ss_pred ceeeeecCCc--------CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCCc
Confidence 3467788865 667788899 9999 7888888888887 559999999999888887788887 665543
No 202
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.40 E-value=2.2e+02 Score=27.97 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=27.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008696 376 KKADENVLRLVEEQKREKEEALSKILQLEKQLDA 409 (557)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~ki~~LekqL~~ 409 (557)
++||+=|.-=.=.|.||.|++...|..||..+..
T Consensus 110 ~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 110 QKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4567666666678999999999999999888765
No 203
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.09 E-value=1.3e+02 Score=27.09 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=31.9
Q ss_pred HhhcCCCCc-HHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHH
Q 008696 427 MKHLGDEDD-AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAK 469 (557)
Q Consensus 427 mkhm~~~~d-~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~k 469 (557)
++|||+.+| ..+.-.|.+++-++..-...++.++....-|+-+
T Consensus 58 l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 58 LEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 458887665 6677778888888888888888777777777643
No 204
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=34.07 E-value=7.4e+02 Score=28.07 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH---hhhHHHHHhhHHHHHh
Q 008696 308 ARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKRE---ALTERERQKLDADRQQ 360 (557)
Q Consensus 308 a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~---~~~~~er~kL~~e~~k 360 (557)
|..|..........+...++.-+..++.-..+|.+-. +.+-....++-+..+.
T Consensus 205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 5556555666666666666666666665555555333 3344444444444433
No 205
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.06 E-value=9.2e+02 Score=29.19 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcH--HHHHHHHHHHHHHHhHHhhhHHHHH
Q 008696 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDA--AVQKKMKEMNDELESKIDDLDEMES 461 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~--~~~~k~~~l~~~L~ek~~el~~~e~ 461 (557)
+++.+.+..++.+ +++.|+.-+.+.+-+..+..-+-...-+ .+..+..+++.+|--+.+.|..+-+
T Consensus 580 ~~~i~~l~~el~e------q~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~~~~l~~~~e~l~~~~~ 647 (809)
T KOG0247|consen 580 EEEIEALDQELEE------QKMELQQKFSEKKKAMAKVRGILANTSPECSVAAKLLELQSKLWFKDEKLKHLTA 647 (809)
T ss_pred hhhhHHHHHHHHh------hhHHHHhhccchhHHHhhhccccCCCchhhhHHHHHHHHHHHhcccHHHHHHhhc
Confidence 4445554444442 3344444445544444444443222222 4555555666666666666654433
No 206
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.93 E-value=6.3e+02 Score=27.23 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 388 EQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 388 ~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
.|..|--.++..|..|++.+ +.+=.|.+.|...|...|-.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~---k~~~~EnEeL~q~L~~ske~ 270 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRC---KQLAAENEELQQHLQASKES 270 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHH
Confidence 45556667788888888766 35668899999999988754
No 207
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=33.83 E-value=9.1e+02 Score=29.02 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHH
Q 008696 258 LASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWS 337 (557)
Q Consensus 258 L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~ 337 (557)
|..+.+.-..+|++| +|+.+|-..|+.+- +|++++-..+-. |-+.|.....+-.-| .
T Consensus 61 lsqqaelis~qlqE~-----------rrle~e~~~lre~s------l~qkmrLe~qa~--Ele~l~~ae~agraE----a 117 (739)
T PF07111_consen 61 LSQQAELISRQLQEL-----------RRLEEEVRALRETS------LQQKMRLEAQAE--ELEALARAEKAGRAE----A 117 (739)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH------HHHHhHHHHHHH--HHHHHHHHHHhhhhh----H
Q ss_pred HHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH
Q 008696 338 KQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEI 417 (557)
Q Consensus 338 k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi 417 (557)
.+|.-.-|..+..|++|++..+..-.....++-..+.. |-..|+++-..+-+++..||+.| +.||...
T Consensus 118 e~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~---------Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r 185 (739)
T PF07111_consen 118 EELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSS---------LTQAHQEALASLTSKAEELEKSL---ESLETRR 185 (739)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHH
Q 008696 418 EDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (557)
Q Consensus 418 ~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~L 466 (557)
.+....|. .+.+.-+.|.+.|.-.-++|+.--.+...|
T Consensus 186 ~~e~~~La-----------~~q~e~d~L~~qLsk~~~~le~q~tlv~~L 223 (739)
T PF07111_consen 186 AGEAKELA-----------EAQREADLLREQLSKTQEELEAQVTLVEQL 223 (739)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 208
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.74 E-value=6.2e+02 Score=27.10 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=15.6
Q ss_pred hhhHHHHHHHhhhhhHHHHhHHHHHHHH
Q 008696 266 NEDLSELQCKFNETTMSLSRMLEEKDRL 293 (557)
Q Consensus 266 n~~l~elE~k~~e~t~sL~r~meEk~~l 293 (557)
...|.++|+||...-++...+=.||..|
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l 110 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSAL 110 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 3456677777766655555444444433
No 209
>PRK01156 chromosome segregation protein; Provisional
Probab=33.55 E-value=9.1e+02 Score=28.97 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=21.7
Q ss_pred HhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHh
Q 008696 251 KIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSR 285 (557)
Q Consensus 251 ~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r 285 (557)
.+.++.++...|......+.+++.........+.+
T Consensus 467 ~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~ 501 (895)
T PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777666665555444443
No 210
>PHA02540 61 DNA primase; Provisional
Probab=33.38 E-value=26 Score=37.85 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=33.4
Q ss_pred eeeccCCCCCCcC----ccccHHH----HhhhccCCCCCCCcChHHHHhHHHHHHHHHHhcCCCC
Q 008696 39 TLRCPFCSGKKKQ----DYKHKDL----LQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGV 95 (557)
Q Consensus 39 ~~~CP~C~gkkk~----~y~~~~L----LqHA~gvg~sss~r~~k~ka~H~aLak~Le~dl~~~~ 95 (557)
.++||||..+.++ .+.+.+= +=|-.|-|.+-.-=+--....|+.+-.||+......+
T Consensus 27 ~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 27 NFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred EecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHHHHHhcCCChHHHHHHHHHHhC
Confidence 6899999876543 3344333 3477776655211112344566777777777666555
No 211
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.18 E-value=5.7e+02 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=17.2
Q ss_pred HhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 008696 330 KKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (557)
Q Consensus 330 ~~eL~~r~k~L~k~~~~~~~er~kL~~e~~k 360 (557)
..+++....++-.+.|.-++-|++...|++.
T Consensus 80 ~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~ 110 (238)
T PRK14143 80 KQELEELNSQYMRIAADFDNFRKRTSREQED 110 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455666667777777666553
No 212
>smart00360 RRM RNA recognition motif.
Probab=33.16 E-value=64 Score=23.73 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=29.2
Q ss_pred cCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHH
Q 008696 139 LDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 139 G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
+.+...|+. |+.|.++ .+.....+ ..++|++.|.|... ..-..|+
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~-~~a~~a~ 55 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESE-EDAEKAL 55 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCH-HHHHHHH
Confidence 346778888 8889865 44444443 35789999999653 4333443
No 213
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=33.13 E-value=1e+03 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=13.2
Q ss_pred HHHHhcCCeEee--cC-C---eeeccCCC
Q 008696 24 YEELRAGKYKVR--VN-G---TLRCPFCS 46 (557)
Q Consensus 24 y~~Lk~g~~kVk--~~-~---~~~CP~C~ 46 (557)
-..|.+|+.-|. +. + ++.|.||.
T Consensus 791 vd~l~~GYrhv~LRse~Nqpl~lp~Lfv~ 819 (1189)
T KOG1265|consen 791 VDGLNAGYRHVCLRSESNQPLTLPALFVY 819 (1189)
T ss_pred hhcccCcceeEEecCCCCCccccceeEEE
Confidence 356788886555 22 2 45566665
No 214
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=33.03 E-value=2.7e+02 Score=29.08 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=12.7
Q ss_pred CCceeeeecccCCCC
Q 008696 208 GLRIYGWFARADDNT 222 (557)
Q Consensus 208 ~~~LYGW~AradD~~ 222 (557)
++.+||++++-+|-.
T Consensus 140 ~G~~yG~ll~~~~ng 154 (289)
T COG4985 140 GGQLYGKLLRFDSNG 154 (289)
T ss_pred CcchhhheeeeccCC
Confidence 679999999987754
No 215
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=32.34 E-value=23 Score=33.27 Aligned_cols=13 Identities=38% Similarity=1.099 Sum_probs=10.1
Q ss_pred cCCeeeccCCCCC
Q 008696 36 VNGTLRCPFCSGK 48 (557)
Q Consensus 36 ~~~~~~CP~C~gk 48 (557)
+++.|.||.|.+.
T Consensus 120 ~~~~f~Cp~Cg~~ 132 (147)
T smart00531 120 MDGTFTCPRCGEE 132 (147)
T ss_pred CCCcEECCCCCCE
Confidence 3567999999854
No 216
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=32.07 E-value=2.6e+02 Score=28.07 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=36.3
Q ss_pred CceeeeecccCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHH
Q 008696 209 LRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSEL 272 (557)
Q Consensus 209 ~~LYGW~AradD~~~~~~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~el 272 (557)
+.+|+-.|..|.+.-..++.+|+|- +.+|.++...-. +.-....++...+.++...+..|
T Consensus 83 ~~~~~~qa~~d~~~l~e~L~eY~r~---i~svk~~f~~R~-~a~~~~q~a~~~l~kkr~~~~Kl 142 (224)
T cd07623 83 EQLHGEQADTDFYILAELLKDYIGL---IGAIKDVFHERV-KVWQNWQNAQQTLTKKREAKAKL 142 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888899999874 445555554422 22333444444444554444444
No 217
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.87 E-value=5.5e+02 Score=25.94 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 008696 299 EETRKMQRLARDNVRRILEEQEKLSC---ELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (557)
Q Consensus 299 eE~~kmQ~~a~~~~~ri~~e~ekl~~---eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~k 360 (557)
..++..|+ |-.-+.-+-++++.|+. .|++..+.|-..+++|++=.-+=..+-..|+++..+
T Consensus 50 ~q~~s~Qq-al~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 50 KQLKSLQQ-ALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444443 33333444556666554 456666666666666665444434444444444443
No 218
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=31.21 E-value=1e+03 Score=28.80 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=61.1
Q ss_pred CCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHh---hhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 237 LRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKF---NETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVR 313 (557)
Q Consensus 237 LKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~---~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ 313 (557)
-++|.+||..+..-....|+.|--.-+....-..+.|+.- -+.|.-|+....+....+.+|.+++.|--..|+--.-
T Consensus 412 rr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ea~~~irlqy~~~~~~l~k~~~~a~gvld 491 (828)
T PF04094_consen 412 RRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDIRLQYEAHAEDLAKRVDDARGVLD 491 (828)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHhhhhhhh
Confidence 3566677665554444444444333333333333333322 2445566666666778899999999887666554322
Q ss_pred HHHHHHHHhhHH----HHHHHhhhHHHHHHHHHHHhhhH
Q 008696 314 RILEEQEKLSCE----LETKKKKLDSWSKQLNKREALTE 348 (557)
Q Consensus 314 ri~~e~ekl~~e----Le~k~~eL~~r~k~L~k~~~~~~ 348 (557)
... -.+.--.+ +...+..|+.+.+.|+++++.-+
T Consensus 492 aaa-arErrAsE~eas~r~R~~ALEara~ALeERAr~~e 529 (828)
T PF04094_consen 492 AAA-ARERRASEAEASLRAREEALEARAKALEERARAAE 529 (828)
T ss_pred hhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 11222233 33455668888888888875544
No 219
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.07 E-value=6e+02 Score=26.11 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008696 292 RLHYAFVEETRKMQRLARDN 311 (557)
Q Consensus 292 ~l~~~yneE~~kmQ~~a~~~ 311 (557)
+.+..|..||..+.+-=..|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h 51 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAH 51 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 220
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=31.03 E-value=1.3e+03 Score=29.82 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 008696 261 KIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRK---MQRLARDNVRRILEEQEKLS 323 (557)
Q Consensus 261 ~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~k---mQ~~a~~~~~ri~~e~ekl~ 323 (557)
.|...+..+..+-++..+....+...-.+.+...++|.+++.+ -+..|.+....|..-+..|+
T Consensus 886 ~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~ 951 (1294)
T KOG0962|consen 886 DIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLH 951 (1294)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445566778888888877 56777777676666555554
No 221
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=30.96 E-value=22 Score=27.88 Aligned_cols=10 Identities=50% Similarity=1.401 Sum_probs=7.9
Q ss_pred eccCCCCCCc
Q 008696 41 RCPFCSGKKK 50 (557)
Q Consensus 41 ~CP~C~gkkk 50 (557)
.||||.|...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 6999987654
No 222
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=30.95 E-value=58 Score=31.90 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=8.9
Q ss_pred HHHHHHHhhhh
Q 008696 269 LSELQCKFNET 279 (557)
Q Consensus 269 l~elE~k~~e~ 279 (557)
|+++|.|||..
T Consensus 2 LeD~EsklN~A 12 (166)
T PF04880_consen 2 LEDFESKLNQA 12 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888888876
No 223
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=30.77 E-value=60 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=18.6
Q ss_pred hhhhHHHHhHHHH---HHHHHHHHHHH
Q 008696 277 NETTMSLSRMLEE---KDRLHYAFVEE 300 (557)
Q Consensus 277 ~e~t~sL~r~meE---k~~l~~~yneE 300 (557)
+.+|.|++++|+| |+.+..+||++
T Consensus 4 D~iT~SM~~ai~eT~rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 4 DKITDSMQKAIDETNRRREIQIAYNKE 30 (44)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999988 77889999987
No 224
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=30.38 E-value=5.8e+02 Score=30.15 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=62.7
Q ss_pred HHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 242 DIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE------KDRLHYAFVEETRKMQRLARDNVRRI 315 (557)
Q Consensus 242 ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE------k~~l~~~yneE~~kmQ~~a~~~~~ri 315 (557)
+......++..+-|+-|...|....+.++.+|...-...+++.+|..+ |..|+++|+.-.+.-+...+++.+||
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334456677889999999999999999999999999999999876 45789999999988888888888877
Q ss_pred HHHH
Q 008696 316 LEEQ 319 (557)
Q Consensus 316 ~~e~ 319 (557)
=.--
T Consensus 155 ~~~~ 158 (632)
T PF14817_consen 155 QGQV 158 (632)
T ss_pred HHHH
Confidence 4433
No 225
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=30.31 E-value=2.8e+02 Score=25.09 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=44.9
Q ss_pred chhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008696 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ 305 (557)
Q Consensus 226 ~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ 305 (557)
.+|..|.+ -|..+++...+..+....+ +... -.+.++=....+...+|+-+++=|.++.++|+| |.+||
T Consensus 33 sF~~~L~~--al~~vn~~q~~a~~~~~~~---~~G~-----~~l~~vmiA~~kA~lslq~~vqVRNKlveAYqE-IMrMq 101 (102)
T PRK00732 33 SFGALLKD--AMGSVLEAGRKSDAQTAAM---ASGK-----ANLMDVVTAVAETDVAVSTLVSVRDRVIQAYEE-IMRMP 101 (102)
T ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHH---HcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 57777776 3555555444444333322 2222 136666666688899999999999999999987 55554
No 226
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.24 E-value=3.4e+02 Score=22.96 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 282 SLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRI 315 (557)
Q Consensus 282 sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri 315 (557)
||.+.+.|+|..+..--+|-.++...=..|..-|
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~I 35 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTI 35 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4566667777777777777666655555554444
No 227
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=30.04 E-value=3e+02 Score=30.91 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH
Q 008696 236 KLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE 289 (557)
Q Consensus 236 dLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE 289 (557)
|.+.+-++++.+.-+..--+..|+.+-...|+|++-|+++|...++-|.+-=.|
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQE 161 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQE 161 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhH
Confidence 444555566666655555577899999999999999999999998877755433
No 228
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=29.88 E-value=28 Score=27.92 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=12.0
Q ss_pred cCCe-Eee-cCCeeeccCCC
Q 008696 29 AGKY-KVR-VNGTLRCPFCS 46 (557)
Q Consensus 29 ~g~~-kVk-~~~~~~CP~C~ 46 (557)
+|-+ +.. ..-+|+||+|.
T Consensus 32 NGla~~~~~~~i~y~C~~Cg 51 (54)
T PF10058_consen 32 NGLAPKEEFEEIQYRCPYCG 51 (54)
T ss_pred hcccccccCCceEEEcCCCC
Confidence 3433 344 55599999996
No 229
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.66 E-value=1.2e+02 Score=31.87 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhh-hhhhHHHhhhhHHHHhhc
Q 008696 389 QKREKEEALSKILQLEKQLDAKQK-LEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 389 hkrEke~~~~ki~~LekqL~~kQ~-LELEi~qLkg~L~Vmkhm 430 (557)
=+.|.+++..++.+|..++..... |+.|.++|+..|......
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 357888899999999777776655 999999999999877654
No 230
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.64 E-value=18 Score=42.36 Aligned_cols=124 Identities=25% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH---hhHHHH
Q 008696 299 EETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ---LASMEQ 375 (557)
Q Consensus 299 eE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~---lA~~Eq 375 (557)
.++.++++...+- ..--.+...|+.||+ .|..+...++++++.-+.-|+||++= .-=..++..|. ..-+++
T Consensus 274 ~ei~~L~q~~~eL-~~~A~~a~~LrDElD----~lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~ 347 (713)
T PF05622_consen 274 KEIDELRQENEEL-QAEAREARALRDELD----ELREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLET 347 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444444443322 122234455555554 55566777888888888888888642 00001111111 112223
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----hhhhhhHHHhhhhHHHHh
Q 008696 376 KKADENVLRLVEEQKREKEEALSKILQLEKQLDAK----QKLEMEIEDLKGKLEVMK 428 (557)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~ki~~LekqL~~k----Q~LELEi~qLkg~L~Vmk 428 (557)
...-|+-++-+..-+.+-+.+-..|.+|+.+|+.. ..|+.|+.+|+.++..+.
T Consensus 348 ~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~ 404 (713)
T PF05622_consen 348 KAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALE 404 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445566677777888888888664 457888888888887553
No 231
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.55 E-value=1.1e+03 Score=28.85 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhh---HHHHHh
Q 008696 287 LEEKDRLHYAFVEETRKMQRLAR---DNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKL---DADRQQ 360 (557)
Q Consensus 287 meEk~~l~~~yneE~~kmQ~~a~---~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL---~~e~~k 360 (557)
.|+.+...+.|...|+.|+-.-. ....+.-.+|+.|..++.....+.-.-.+|++-+.++=...+.++ -+..+.
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~ 731 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEA 731 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHh
Confidence 34555666667766666653321 122333344555555444444444444444444444433333222 244555
Q ss_pred hhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHh----------hhhHHHHhhc
Q 008696 361 NDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDL----------KGKLEVMKHL 430 (557)
Q Consensus 361 n~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qL----------kg~L~Vmkhm 430 (557)
+..+++.|..|..|-++- -++..-|.++|..|- --|+++ +|.+.++-.-
T Consensus 732 ~~t~~eel~a~~~e~k~l------------------~~~q~~l~~~L~k~~---~~~es~k~~~~~a~~~~~~~~~~~~~ 790 (970)
T KOG0946|consen 732 SKTQNEELNAALSENKKL------------------ENDQELLTKELNKKN---ADIESFKATQRSAELSQGSLNDNLGD 790 (970)
T ss_pred ccCChHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhh---HHHHHHHHHHhhhhcccchhhhhhhh
Confidence 666677776665554321 111222222322211 111222 2333333221
Q ss_pred CCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHH
Q 008696 431 GDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEA 480 (557)
Q Consensus 431 ~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeA 480 (557)
.. .-.+.+++..+....|++...++..++.--|||+.+--..++.+..+
T Consensus 791 qe-qv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 791 QE-QVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred HH-HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 10 11233444666666677777777777777777777666666666544
No 232
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=29.47 E-value=22 Score=30.69 Aligned_cols=13 Identities=31% Similarity=1.019 Sum_probs=4.9
Q ss_pred cCCeeeccCCCCC
Q 008696 36 VNGTLRCPFCSGK 48 (557)
Q Consensus 36 ~~~~~~CP~C~gk 48 (557)
...+|.||||...
T Consensus 19 l~~~F~CPfC~~~ 31 (81)
T PF05129_consen 19 LPKVFDCPFCNHE 31 (81)
T ss_dssp -SS----TTT--S
T ss_pred CCceEcCCcCCCC
Confidence 5689999999733
No 233
>PF03804 DUF325: Viral domain of unknown function; InterPro: IPR003225 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.36 E-value=35 Score=28.69 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred cccccccccCCCCChhHHHHHhh
Q 008696 495 RTNIGVKRLGEIDPKPFQDACKN 517 (557)
Q Consensus 495 ~~~IgiKrmGeld~kpF~~ack~ 517 (557)
-++--|.|.|-+|-.+|+.||+.
T Consensus 33 vt~~dV~RFgf~dRnalv~ACM~ 55 (71)
T PF03804_consen 33 VTHADVRRFGFLDRNALVSACMA 55 (71)
T ss_pred ccHhHHHHhCCCcHHHHHHHHHh
Confidence 56678999999999999999975
No 234
>PRK10698 phage shock protein PspA; Provisional
Probab=29.03 E-value=6.2e+02 Score=25.60 Aligned_cols=38 Identities=5% Similarity=0.160 Sum_probs=22.3
Q ss_pred hhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHH
Q 008696 422 GKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEM 459 (557)
Q Consensus 422 g~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~ 459 (557)
.+.+|-+-|.+.+........+.+.+++.+.+.+-+.+
T Consensus 148 a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 148 SSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence 44445555655554555667777776666666665543
No 235
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Probab=29.01 E-value=2.6e+02 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.0
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008696 267 EDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ 305 (557)
Q Consensus 267 ~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ 305 (557)
..+.++=....+.+.+|+-+++=|.++.++|+| |.+||
T Consensus 64 ~~lhevmiA~~kA~lslq~~vqVRNKlv~AYqE-IMrMq 101 (102)
T PRK12728 64 VDLHDVMIAAQKASISLQLTVQIRNKVVEAYQE-IMRMQ 101 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 466666677788899999999999999999987 55554
No 236
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.90 E-value=6.2e+02 Score=25.54 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=8.5
Q ss_pred hhhhhcCCCCCceeeeecc
Q 008696 199 HWIARKESPGLRIYGWFAR 217 (557)
Q Consensus 199 dW~~~~~~~~~~LYGW~Ar 217 (557)
+|...+.. ..-=|||+.
T Consensus 66 ~w~~Vr~~--~G~~GWV~~ 82 (206)
T PRK10884 66 NYAQIRDS--KGRTAWIPL 82 (206)
T ss_pred CEEEEEeC--CCCEEeEEH
Confidence 56555432 122399853
No 237
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=28.86 E-value=6.5e+02 Score=25.84 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 008696 294 HYAFVEETRKMQRLARDNVRRILEEQEKLS------CELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (557)
Q Consensus 294 ~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~------~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~ 359 (557)
+..|.++++..+..-.+...+|-.=.++++ ..|+.+..+++.-...|......+..+|..|+.+..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555544433222222 244555555555555555555555555555555544
No 238
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=28.78 E-value=28 Score=22.51 Aligned_cols=19 Identities=32% Similarity=0.751 Sum_probs=10.2
Q ss_pred eeccCCCCCCcCccccHHHHhhh
Q 008696 40 LRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
|+||+|+=.. ....|..|-
T Consensus 1 y~C~~C~y~t----~~~~l~~H~ 19 (24)
T PF13909_consen 1 YKCPHCSYST----SKSNLKRHL 19 (24)
T ss_dssp EE-SSSS-EE----SHHHHHHHH
T ss_pred CCCCCCCCcC----CHHHHHHHH
Confidence 7899997211 234566663
No 239
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=28.68 E-value=9e+02 Score=27.40 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=49.0
Q ss_pred hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHH
Q 008696 413 LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQ 478 (557)
Q Consensus 413 LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELq 478 (557)
-+-||+.|+-.|.+--+... -.++-+.+..|.+-|-.|-..|+.+-.-+++|.+.--+.-..|+
T Consensus 367 ke~E~q~lr~~l~~~~~~s~--~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 367 KESEIQKLRNQLSARASSSS--WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHhccCC--cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 37889999988877554433 45788999999999999999999998888888875444444444
No 240
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.43 E-value=1.1e+03 Score=28.30 Aligned_cols=188 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008696 244 VQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLS 323 (557)
Q Consensus 244 ~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~ 323 (557)
......+.+.-++-+.+++-.-+..++.+....+..---|++--.+-+...+.-.+.+...++.+--..+.---+..=..
T Consensus 156 ~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~ 235 (716)
T KOG4593|consen 156 LGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSL 235 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q ss_pred H-HHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 324 C-ELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQ 402 (557)
Q Consensus 324 ~-eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~ 402 (557)
. ||+........+-.+|.++......-+..+..-++.++ .|..=+-|.|.+.+++-+
T Consensus 236 ~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~----------------------tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 236 SEELEAINKNMKDQLQELEELERALSQLREELATLRENRE----------------------TVGLLQEELEGLQSKLGR 293 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHH
Q 008696 403 LEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (557)
Q Consensus 403 LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~ 465 (557)
|++=-+..--||||...|+.+|+=-+...++.+ .+..+..-|+.+...-+.
T Consensus 294 ~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~------------~~~~~~~~~~~~~~e~s~ 344 (716)
T KOG4593|consen 294 LEKLQSTLLGLELENEDLLTKLQRWERADQEMG------------SLRTPEDLMEKLVNEQSR 344 (716)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh------------ccCCHHHHHHHHHHHHHH
No 241
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.17 E-value=5.9e+02 Score=25.07 Aligned_cols=51 Identities=20% Similarity=0.474 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHH
Q 008696 289 EKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQ 339 (557)
Q Consensus 289 Ek~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~ 339 (557)
+-..++..|-.+|..--..++....+++.....+..+++.-..++..|..+
T Consensus 23 DP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 23 DPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666677777777766666666666555555555553
No 242
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.16 E-value=7.4e+02 Score=26.21 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH-------HHHHHHHHHHHHHHHHHH
Q 008696 253 HVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE-------KDRLHYAFVEETRKMQRL 307 (557)
Q Consensus 253 ~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE-------k~~l~~~yneE~~kmQ~~ 307 (557)
.-|..|-++|+..+...+++..+.+++...+.++-.+ -....+.|.+-+|.||.-
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555555555555555544444433 334566777788888875
No 243
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.04 E-value=6.1e+02 Score=25.24 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=7.0
Q ss_pred hhhhHHHhhhhHHHHh
Q 008696 413 LEMEIEDLKGKLEVMK 428 (557)
Q Consensus 413 LELEi~qLkg~L~Vmk 428 (557)
||..|.+|+.+.++|+
T Consensus 136 Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 136 LEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 244
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=27.99 E-value=29 Score=22.85 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=16.4
Q ss_pred eeeccCCCCCCcCccccHHHHhhhc
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
.|.|+.|... +-.+..|+.|-.
T Consensus 1 ~~~C~~C~~~---F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGKT---FSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTEE---ESSHHHHHHHHC
T ss_pred CCCCCccCCc---cCChhHHHHHhH
Confidence 4899999733 456888999953
No 245
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.96 E-value=4.8e+02 Score=24.01 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=19.7
Q ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 008696 319 QEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (557)
Q Consensus 319 ~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~ 359 (557)
...++.++..-..+++.-...|+..++.-+.++..|+.++.
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~ 108 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELS 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555555544
No 246
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=27.94 E-value=6.2e+02 Score=25.27 Aligned_cols=125 Identities=18% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhc
Q 008696 287 LEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNN 366 (557)
Q Consensus 287 meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~ 366 (557)
+|+-.+++..|-.||+.--..++...-+++-....+..+++.-....+.|..
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~---------------------------- 73 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE---------------------------- 73 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q ss_pred hhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHH
Q 008696 367 SLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446 (557)
Q Consensus 367 ~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~ 446 (557)
-|..--++-+|++-+.+-. +|......+..|+.|++. ....++.|.
T Consensus 74 ---~A~~Al~~G~EdLAr~Al~---~k~~~~~~~~~l~~~~~~----------------------------~~~~v~~l~ 119 (219)
T TIGR02977 74 ---KAELALSKGREDLARAALI---EKQKAQELAEALERELAA----------------------------VEETLAKLQ 119 (219)
T ss_pred ---HHHHHHHCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Q ss_pred HHHHhHHhhhHHHHHhHHHHHHHHhhc
Q 008696 447 DELESKIDDLDEMESLNKTLIAKERQS 473 (557)
Q Consensus 447 ~~L~ek~~el~~~e~~nq~Li~ker~s 473 (557)
..|.+.+..+..+..-=.+|+.+.+.+
T Consensus 120 ~~l~~L~~ki~~~k~k~~~l~ar~~~A 146 (219)
T TIGR02977 120 EDIAKLQAKLAEARARQKALAIRHQAA 146 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 247
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=27.92 E-value=36 Score=36.73 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=20.7
Q ss_pred HHHhhhhHHHHHhcCCeEeecCCeeeccCCCCC
Q 008696 16 INEYLEKPYEELRAGKYKVRVNGTLRCPFCSGK 48 (557)
Q Consensus 16 i~~y~~k~y~~Lk~g~~kVk~~~~~~CP~C~gk 48 (557)
|-|..++||+.-+=| .+..||||.|..+
T Consensus 266 l~eC~~~f~~~e~L~-----g~d~W~CpkC~~k 293 (415)
T COG5533 266 LQECIDRFYEEEKLE-----GKDAWRCPKCGRK 293 (415)
T ss_pred HHHHHHHhhhHHhhc-----CcccccCchhccc
Confidence 557888888865433 4678999999743
No 248
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=27.87 E-value=4.3e+02 Score=23.39 Aligned_cols=56 Identities=27% Similarity=0.282 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHH
Q 008696 267 EDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDN--VRRILEEQEKLSCEL 326 (557)
Q Consensus 267 ~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~--~~ri~~e~ekl~~eL 326 (557)
.++.-||......-.+..-+++++ .+-.+||+=+|...-.| .-|.--||-.|+.++
T Consensus 3 dkI~rLE~~~~g~l~~~~~~~~e~----~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~ 60 (86)
T PF12711_consen 3 DKIKRLEKLLDGKLPSESYLEEEN----EALKEEIQLLREQVEHNPEVTRFAMENIRLREEL 60 (86)
T ss_pred hHHHHHHHHhcCCCCccchhHHHH----HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666 44566777676665554 334444555544443
No 249
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.85 E-value=5.1e+02 Score=28.71 Aligned_cols=55 Identities=31% Similarity=0.493 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCc--------ccccccccCC
Q 008696 434 DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGAR--------TNIGVKRLGE 505 (557)
Q Consensus 434 ~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~--------~~IgiKrmGe 505 (557)
+..+++.++.+|.+++.+.++++. ++++.+.+++..|..++... .|+=||+.|+
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~ 128 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELD------------------ELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGE 128 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCC
Confidence 345677777788887777777763 46666677777777775433 3344788886
Q ss_pred C
Q 008696 506 I 506 (557)
Q Consensus 506 l 506 (557)
-
T Consensus 129 ~ 129 (425)
T PRK05431 129 P 129 (425)
T ss_pred C
Confidence 3
No 250
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.65 E-value=4.3e+02 Score=23.32 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=51.2
Q ss_pred hHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 008696 252 IHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK 331 (557)
Q Consensus 252 ~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~ 331 (557)
.+...++..++.....+++-||.....++..-..|-. .-.=+..+.+.+.........+.+.| ++-++-=.+||.--.
T Consensus 6 ~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~-~~~~l~~~~~~l~~k~~~l~~~l~~I-d~Ie~~V~~LE~~v~ 83 (99)
T PF10046_consen 6 SKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKD-IAAGLEKNLEDLNQKYEELQPYLQQI-DQIEEQVTELEQTVY 83 (99)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3444566666666666666666665555544443332 12222333333444343444555544 555666678888899
Q ss_pred hhHHHHHHHHH
Q 008696 332 KLDSWSKQLNK 342 (557)
Q Consensus 332 eL~~r~k~L~k 342 (557)
.||.++++|+.
T Consensus 84 ~LD~ysk~LE~ 94 (99)
T PF10046_consen 84 ELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 251
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=27.64 E-value=1e+02 Score=32.00 Aligned_cols=47 Identities=6% Similarity=0.107 Sum_probs=34.5
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNND 176 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~-~G-h~G~aIv~F~~d 176 (557)
.+.|-|+|.. .+..+|++ |+.|.|+ .|+.+.++ .| +.||+.|.|.+.
T Consensus 5 ~l~V~nLp~~--------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 5 NLIVNYLPQT--------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 3567888753 36788999 9999985 56666554 23 779999999764
No 252
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=27.52 E-value=1.2e+03 Score=28.36 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=22.8
Q ss_pred HHHHHHHhhHHhhhhhhHHH----hhhhHHHHhhc
Q 008696 400 ILQLEKQLDAKQKLEMEIED----LKGKLEVMKHL 430 (557)
Q Consensus 400 i~~LekqL~~kQ~LELEi~q----Lkg~L~Vmkhm 430 (557)
++++|+.+..|=+=.+|-+| |+.||.+++.-
T Consensus 207 ~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkE 241 (782)
T COG0466 207 LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKE 241 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777666 77888888774
No 253
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=27.27 E-value=1e+02 Score=29.80 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=35.4
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 008696 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETK 329 (557)
Q Consensus 250 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k 329 (557)
....+..+|...|...|-. ++........+|.++.++-.+-|-.-.+...+++......++-++.+.+++-.+|...
T Consensus 42 ~l~~~~~~l~eeik~~n~~---~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 42 QLQNVSSSLQEEIKDANPE---AEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSEN 118 (155)
T ss_dssp HHHHHHHHHHHHHTT-SST---HHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHhcChh---HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333 3333444444444444443322333333344455555566666777777766666544
Q ss_pred Hh
Q 008696 330 KK 331 (557)
Q Consensus 330 ~~ 331 (557)
+.
T Consensus 119 ~~ 120 (155)
T PF07464_consen 119 SE 120 (155)
T ss_dssp --
T ss_pred HH
Confidence 33
No 254
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.22 E-value=6.2e+02 Score=25.02 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=14.1
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhH
Q 008696 322 LSCELETKKKKLDSWSKQLNKREALTERERQKLD 355 (557)
Q Consensus 322 l~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~ 355 (557)
+...|..+...|+.+...|++++..-+..+..|.
T Consensus 83 ~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~ 116 (201)
T PF12072_consen 83 LEKRLQQREEQLDRRLEQLEKREEELEKKEEELE 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333333333
No 255
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.07 E-value=1e+03 Score=27.59 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=9.2
Q ss_pred hHHhhhhhhHHHhhhhHH
Q 008696 408 DAKQKLEMEIEDLKGKLE 425 (557)
Q Consensus 408 ~~kQ~LELEi~qLkg~L~ 425 (557)
+.-..|+.|+.+|.-+|.
T Consensus 398 ~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 398 KELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333455555555555554
No 256
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=27.03 E-value=2.9e+02 Score=24.81 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=29.0
Q ss_pred hHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008696 268 DLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ 305 (557)
Q Consensus 268 ~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ 305 (557)
.+.++=....+...+++-+++=|.++.++|+| |..||
T Consensus 60 dlhevmIA~~kA~ls~q~~vqVRNKlveAYqE-IMrMQ 96 (97)
T PRK03907 60 DLHQAAIAIGKAETSMKLMLEVRNKAISAYKE-ILRTQ 96 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 55555556677889999999999999999987 55554
No 257
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=26.98 E-value=1.1e+03 Score=27.87 Aligned_cols=49 Identities=22% Similarity=0.471 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhh
Q 008696 434 DDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDL 491 (557)
Q Consensus 434 ~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~ 491 (557)
+-+..+..|..|..+|..+..+++.|...=+. | ....+.+++| +.|..|
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~~-----~---sDYeeIK~EL-siLk~i 359 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLNS-----R---SDYEEIKKEL-SILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----h---ccHHHHHHHH-HHHHHh
Confidence 34455677778888888888887766432221 1 3467777776 455544
No 258
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.59 E-value=6.7e+02 Score=25.24 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhh-HHHHHhhhhhhchhHhhHHHHHHhhHHHHHH
Q 008696 307 LARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKL-DADRQQNDLRNNSLQLASMEQKKADENVLRL 385 (557)
Q Consensus 307 ~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL-~~e~~kn~~~~~~l~lA~~Eq~kade~vlkL 385 (557)
....+..++-.....+-..|+.-++..+.+|++++........-.... ..+.+|. ..-+..|...-.+++.+....
T Consensus 103 ~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~---~~K~~k~~~~~~~a~~~Y~~~ 179 (239)
T cd07647 103 KTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKL---KKKAAQCKTSAEEADSAYKSS 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455556677777888888888876432211111000 1111111 223445556666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-HHHhhhhHHHH
Q 008696 386 VEEQKREKEEALSKILQLEKQLDAKQKLEME-IEDLKGKLEVM 427 (557)
Q Consensus 386 ve~hkrEke~~~~ki~~LekqL~~kQ~LELE-i~qLkg~L~Vm 427 (557)
|+...+=.......+... ++.=|.||-+ |..|+..|.+=
T Consensus 180 v~~l~~~~~~~~~~~~~~---~~~~Q~lEe~Ri~~lk~~l~~y 219 (239)
T cd07647 180 IGCLEDARVEWESEHATA---CQVFQNMEEERIKFLRNALWVH 219 (239)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 666654444433333332 2222555443 56666666553
No 259
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=26.56 E-value=1.1e+02 Score=28.53 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=43.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFE 187 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~fe 187 (557)
+.++.|-|++. ..+...|.+ |..|.+. .++..+.. .-.+|++.|.|.+.-....-...+.
T Consensus 115 ~~~l~v~nL~~--------~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPY--------DVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCC--------CCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 68888999985 336778899 9999976 56666653 5688999999998765544444444
No 260
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=26.54 E-value=7.2e+02 Score=25.58 Aligned_cols=168 Identities=20% Similarity=0.384 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhH
Q 008696 290 KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQ 369 (557)
Q Consensus 290 k~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~ 369 (557)
...+...|..||..+++. +..+..++-++..++++-..+++.-..+++.. -..+..++.+...
T Consensus 45 ~~~~~~~ye~el~~lr~~----id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e----~~~~~~le~el~~--------- 107 (312)
T PF00038_consen 45 VSRIKEMYEEELRELRRQ----IDDLSKEKARLELEIDNLKEELEDLRRKYEEE----LAERKDLEEELES--------- 107 (312)
T ss_dssp -HHHHHHHHHHHHCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---------
T ss_pred CcccccchhhHHHHhHHh----hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhh---------
Confidence 345778888888765543 33344444555555554444444433333322 1123333332221
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh-hhhhhHHHhhhhHH--HHhhcCCCCcHHHHHHHHHHH
Q 008696 370 LASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQ-KLEMEIEDLKGKLE--VMKHLGDEDDAAVQKKMKEMN 446 (557)
Q Consensus 370 lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ-~LELEi~qLkg~L~--Vmkhm~~~~d~~~~~k~~~l~ 446 (557)
+ -+-++......-.+.++|..|+.+|+-.. --+-||..|+.++. +--.+.+.-..++-..|.+++
T Consensus 108 ---l---------rk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR 175 (312)
T PF00038_consen 108 ---L---------RKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR 175 (312)
T ss_dssp ---H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHH
T ss_pred ---h---------hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHH
Confidence 1 13344444555667778888888887654 45677999998886 111111111244555555555
Q ss_pred HHHHhHHhhh-HHHHHhH----HHHHHHHhhccHHHHHHHHHHHH
Q 008696 447 DELESKIDDL-DEMESLN----KTLIAKERQSNDELQEARRELIQ 486 (557)
Q Consensus 447 ~~L~ek~~el-~~~e~~n----q~Li~ker~sndELqeARkelI~ 486 (557)
.+.+...... .+++... ..|...-..++.++..++.++..
T Consensus 176 ~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~ 220 (312)
T PF00038_consen 176 AQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKE 220 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHH
Confidence 5543332211 1223322 23333444566667777666543
No 261
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=26.42 E-value=5.8e+02 Score=24.40 Aligned_cols=130 Identities=28% Similarity=0.348 Sum_probs=61.5
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHh---hhHHH
Q 008696 274 CKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREA---LTERE 350 (557)
Q Consensus 274 ~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~---~~~~e 350 (557)
.++..+...|.++-.+++.|.. +.+-+..=-+.+..+...++-+++..+.++++-..+|..=...|..+.. .--.+
T Consensus 3 ~K~l~v~~kLK~~~~e~dsle~-~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 3 EKFLHVEEKLKESESEKDSLED-HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665533 2222222222344555556666666666644444444443333333332 12246
Q ss_pred HHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 008696 351 RQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQK-REKEEALSKILQLEKQLD 408 (557)
Q Consensus 351 r~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hk-rEke~~~~ki~~LekqL~ 408 (557)
+..|.++.++...+.+.|...... -.+.+.-+|..+ +.++.+-..+.+|.+||.
T Consensus 82 k~~L~k~lq~~q~kv~eLE~~~~~----~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSELESLNSS----LENLLQEKEQEKVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666766666655555555543222 122233333222 233444455555555554
No 262
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=26.29 E-value=22 Score=42.71 Aligned_cols=71 Identities=27% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHH
Q 008696 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRE 483 (557)
Q Consensus 409 ~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARke 483 (557)
+|.+|.-.+..+...|+..+.--+ .+.+.-..|..++++-.-+|+...+.+..|-.|-|+-.-.|.+.+..
T Consensus 322 aKKkL~~~L~el~e~le~~~~~~~----~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 322 AKKKLERKLQELQEQLEEANAKVS----SLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555555555554444221 22333344556666666666666666666666666666666665554
No 263
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=25.93 E-value=3.2e+02 Score=23.90 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=39.4
Q ss_pred HhhHHhhhhhhHHHhhhhHHHHhhc-----CCCCcHH-------HHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhc
Q 008696 406 QLDAKQKLEMEIEDLKGKLEVMKHL-----GDEDDAA-------VQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQS 473 (557)
Q Consensus 406 qL~~kQ~LELEi~qLkg~L~Vmkhm-----~~~~d~~-------~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~s 473 (557)
..+...++-.+|+..+++..|+..| +++...+ +...+..++..+..-..+..+-+.+...| ..
T Consensus 2 ~~e~~~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~dee~l~~lL-----~~ 76 (100)
T PF03127_consen 2 RPEQVSKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYESCKSMRPRIQRLIEEVEDEELLGELL-----QA 76 (100)
T ss_dssp HHCTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHH-----HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH-----HH
Confidence 4456677888888899999888876 3333221 22334444555555554444433222222 34
Q ss_pred cHHHHHHH
Q 008696 474 NDELQEAR 481 (557)
Q Consensus 474 ndELqeAR 481 (557)
||+|..|-
T Consensus 77 ND~L~~~l 84 (100)
T PF03127_consen 77 NDELNQAL 84 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
No 264
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.89 E-value=4.1e+02 Score=26.40 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=34.1
Q ss_pred hHHHHHhHHHHHHHHhhccHH------HHHHHHHHHHhhhhhcCCcccccccccCC---CCChhHHHHHhh
Q 008696 456 LDEMESLNKTLIAKERQSNDE------LQEARRELIQGLSDLIGARTNIGVKRLGE---IDPKPFQDACKN 517 (557)
Q Consensus 456 l~~~e~~nq~Li~ker~sndE------LqeARkelI~gl~~~~~~~~~IgiKrmGe---ld~kpF~~ack~ 517 (557)
|.-+++|..+|..-.-.++.+ ++-.++.|++.|.. -||+.+|. .=.=-||.|+..
T Consensus 93 LpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k-------~Gv~~i~~~Ge~FDP~~HeAv~~ 156 (193)
T COG0576 93 LPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK-------LGVEEIGPEGEKFDPNLHEAVQR 156 (193)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH-------CCCEEeCCCCCCCCHHHhhheee
Confidence 667788888887755555555 66666666666664 35555544 223346777654
No 265
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=25.81 E-value=28 Score=27.21 Aligned_cols=14 Identities=29% Similarity=0.733 Sum_probs=7.8
Q ss_pred CCeeeccCCCCCCc
Q 008696 37 NGTLRCPFCSGKKK 50 (557)
Q Consensus 37 ~~~~~CP~C~gkkk 50 (557)
...|+||.|...|.
T Consensus 32 p~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 32 PDDWVCPVCGAPKS 45 (47)
T ss_dssp -TT-B-TTTSSBGG
T ss_pred CCCCcCcCCCCccc
Confidence 34599999986543
No 266
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.58 E-value=7.6e+02 Score=26.47 Aligned_cols=66 Identities=29% Similarity=0.427 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhh-HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHH
Q 008696 391 REKEEALSKILQLEKQLD-AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLI 467 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~-~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li 467 (557)
.|-|+=..|-+-.-.||| .|+.|--+|.-||-+|+ ++-.-+..++.++.+|..+++.+-.....|-
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~le-----------e~eE~~~~~~re~~eK~~elEr~K~~~d~L~ 153 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLE-----------ELEETLAQLQREYREKIRELERQKRAHDSLR 153 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777886 57888888888888887 3445567777778888888877666666654
No 267
>TIGR00205 fliE flagellar hook-basal body complex protein FliE. fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction.
Probab=25.43 E-value=3.6e+02 Score=24.65 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=31.3
Q ss_pred hhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008696 266 NEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ 305 (557)
Q Consensus 266 n~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ 305 (557)
...+.++=....+...+|+-+++=|.++.++|+| |.+||
T Consensus 70 ~~dlhevmia~~kA~lslq~~vqVRNKlveAYqE-IMrMQ 108 (108)
T TIGR00205 70 SVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQE-IMRMQ 108 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 4467777777788899999999999999999987 44443
No 268
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=25.43 E-value=1.5e+02 Score=31.28 Aligned_cols=44 Identities=32% Similarity=0.319 Sum_probs=33.6
Q ss_pred chhHhhHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH
Q 008696 366 NSLQLASMEQKKADENVLRLVEEQKREK----EEALSKILQLEKQLDA 409 (557)
Q Consensus 366 ~~l~lA~~Eq~kade~vlkLve~hkrEk----e~~~~ki~~LekqL~~ 409 (557)
.+..-|+-.+.-+--.|++.||+||-|- +.+.++|.+||++--.
T Consensus 234 ~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~ 281 (290)
T PF07899_consen 234 EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKAD 281 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHH
Confidence 4445566666667788999999999654 4588899999998733
No 269
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=25.30 E-value=1.6e+02 Score=21.79 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=28.3
Q ss_pred CChhhHhh-hcccCC-ceeeeeccCC-CCcceEEEEeCCChhchhhHH
Q 008696 140 DSGYWLKR-FAVFKP-VEVRIFWNEE-NPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 140 ~s~~~L~~-~~~F~p-~kv~~l~~~~-Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
.+...++. |+.|.+ ..+...+.+. .+.|++.|.|.+. ..-..|.
T Consensus 11 ~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~-~~a~~a~ 57 (74)
T cd00590 11 VTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDE-EDAEKAL 57 (74)
T ss_pred cCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCH-HHHHHHH
Confidence 46778888 888764 3444444433 3588999999965 3444443
No 270
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=25.18 E-value=98 Score=23.48 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=19.1
Q ss_pred Hhh-hcccCCceeeeeccCCCCcceEEEEeCC
Q 008696 145 LKR-FAVFKPVEVRIFWNEENPTAQAVVKFNN 175 (557)
Q Consensus 145 L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~ 175 (557)
|.+ |+.|.++.-..+.... +|+|.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~ 30 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFAS 30 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESS
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECC
Confidence 455 8889876644443333 7899999974
No 271
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=25.17 E-value=4.9e+02 Score=30.68 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=7.3
Q ss_pred hhhhHHHhhhhHHHH
Q 008696 413 LEMEIEDLKGKLEVM 427 (557)
Q Consensus 413 LELEi~qLkg~L~Vm 427 (557)
|.-|++.|..+|..+
T Consensus 571 L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 571 LQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 444555555555444
No 272
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=24.67 E-value=1.5e+03 Score=28.75 Aligned_cols=37 Identities=38% Similarity=0.455 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH---HhhhhhhHHHhhhhH
Q 008696 388 EQKREKEEALSKILQLEKQLDA---KQKLEMEIEDLKGKL 424 (557)
Q Consensus 388 ~hkrEke~~~~ki~~LekqL~~---kQ~LELEi~qLkg~L 424 (557)
.|++|-+.-+.-+-+|++-||. -|++--+|-.|+..|
T Consensus 1275 ~q~~eiq~n~~ll~~L~~tlD~S~~a~Kqk~di~kl~~~l 1314 (1439)
T PF12252_consen 1275 EQEKEIQQNLQLLDKLEKTLDDSDTAQKQKEDIVKLNDFL 1314 (1439)
T ss_pred hhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3344444445566677777763 466666777776655
No 273
>PHA00616 hypothetical protein
Probab=24.60 E-value=24 Score=27.41 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.0
Q ss_pred eeccCCCCCCcCccccHHHHhhhc
Q 008696 40 LRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
|.||-|+.. .-..++|..|-.
T Consensus 2 YqC~~CG~~---F~~~s~l~~H~r 22 (44)
T PHA00616 2 YQCLRCGGI---FRKKKEVIEHLL 22 (44)
T ss_pred CccchhhHH---HhhHHHHHHHHH
Confidence 789999854 556788888854
No 274
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=24.55 E-value=42 Score=22.64 Aligned_cols=20 Identities=30% Similarity=0.791 Sum_probs=15.1
Q ss_pred eeeccCCCCCCcCccccHHHHhhh
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
...||.|.++ |....|..|.
T Consensus 2 l~~C~~CgR~----F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRK----FNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCE----ECHHHHHHHH
Confidence 4679999866 7777777774
No 275
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=24.44 E-value=7.9e+02 Score=25.27 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=23.8
Q ss_pred cHHHHHHHH---HHHHhhhhhcCC-cccccccccCCCCChhHHHHH
Q 008696 474 NDELQEARR---ELIQGLSDLIGA-RTNIGVKRLGEIDPKPFQDAC 515 (557)
Q Consensus 474 ndELqeARk---elI~gl~~~~~~-~~~IgiKrmGeld~kpF~~ac 515 (557)
|.+|+..-. .++.-+....++ ....+| -|-.+|..||+..|
T Consensus 134 ~~~l~~l~~~v~~l~~~~~~~~~~~~~~~~~-flsq~~l~~Y~~~e 178 (256)
T PF14932_consen 134 NNELNQLLGEVSKLASELAHAHSGQQQNPPV-FLSQMPLEQYLSQE 178 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCc-hhhhCCHHHHHHHH
Confidence 444444443 344434432232 345666 78899999998876
No 276
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.37 E-value=7.5e+02 Score=28.69 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHH
Q 008696 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQ 439 (557)
Q Consensus 409 ~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~ 439 (557)
.++.|+-..++++..+.-+|.++.+|-.-+.
T Consensus 238 ~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 238 AKNDLQNDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccHhHHHHHH
Confidence 4677888999999999999999876544333
No 277
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=24.29 E-value=2.7e+02 Score=31.40 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 008696 378 ADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKL 413 (557)
Q Consensus 378 ade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~L 413 (557)
...++|+-+++-+++||+|++-..+.|++|.+.+.+
T Consensus 38 eh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 38 EHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888999999999999999999888764
No 278
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.13 E-value=1.1e+03 Score=26.79 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=48.7
Q ss_pred eecccCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH----
Q 008696 214 WFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---- 289 (557)
Q Consensus 214 W~AradD~~~~~~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE---- 289 (557)
|+|.++|+...|.+|..-. |||--.---.++..-++..+-+.-.=.--.|..-+.++.--+.+--.||.-.|.+
T Consensus 19 ~~a~ee~~~rq~a~~qa~q--~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ 96 (542)
T KOG0993|consen 19 YLAKEEDLKRQNAVLQAAQ--DDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPT 96 (542)
T ss_pred ccchhhHHHhccchhhhhc--chHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCcc
Confidence 5899999998888877533 4444332222333322222211111111223444555555555666677766655
Q ss_pred -HHHHHHHHHHHHHHHHHHH
Q 008696 290 -KDRLHYAFVEETRKMQRLA 308 (557)
Q Consensus 290 -k~~l~~~yneE~~kmQ~~a 308 (557)
--++++.|..|..-.|+--
T Consensus 97 ye~q~~~~leqertq~qq~~ 116 (542)
T KOG0993|consen 97 YECQMCQNLEQERTQLQQNE 116 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 1266777777766555543
No 279
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=24.00 E-value=3e+02 Score=29.49 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHh
Q 008696 391 REKEEALSKILQLEKQLDAKQKLEMEIEDL 420 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ~LELEi~qL 420 (557)
..+.++..+|.+||+.|.+||+=||+-..+
T Consensus 45 ~~rK~~~~~~~~le~el~qkH~kEL~~~~~ 74 (302)
T KOG2606|consen 45 KKRKELTEDIAKLEKELSQKHKKELEKLKL 74 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 344567889999999999999999998887
No 280
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.97 E-value=3.4e+02 Score=30.52 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHhhccHHHHHHHHHHH
Q 008696 460 ESLNKTLIAKERQSNDELQEARRELI 485 (557)
Q Consensus 460 e~~nq~Li~ker~sndELqeARkelI 485 (557)
..-..+|..+.+..+.+|+.++++|-
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777888888888764
No 281
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.85 E-value=6.2e+02 Score=23.91 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh----hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhh
Q 008696 380 ENVLRLVEEQKREKEEALSKILQLEKQLDAKQK----LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDD 455 (557)
Q Consensus 380 e~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~----LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~e 455 (557)
++..--++.-......+-....++|.++..=|. ||-+|.++..+|.-.++.-++.+... ...+.|+..++-.+++
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhHHHHHhhHHHHHHH
Q ss_pred hHHHHHhHHHHHHHHh---hccHHHHHHHHHH
Q 008696 456 LDEMESLNKTLIAKER---QSNDELQEARREL 484 (557)
Q Consensus 456 l~~~e~~nq~Li~ker---~sndELqeARkel 484 (557)
|+..+.--.+..-|-| ...+++....+.|
T Consensus 89 le~ae~~L~e~~ekl~e~d~~ae~~eRkv~~l 120 (143)
T PF12718_consen 89 LEEAEKKLKETTEKLREADVKAEHFERKVKAL 120 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 282
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.76 E-value=6.6e+02 Score=27.78 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCc--------ccccccccCC
Q 008696 435 DAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGAR--------TNIGVKRLGE 505 (557)
Q Consensus 435 d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~--------~~IgiKrmGe 505 (557)
-.+++..+.+|.+++.+.+..+. ++++...++...|..++... .++=||+-|+
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~------------------~~~~~~~~~~~~lPN~~~~~vP~g~~~~~n~~~~~~g~ 131 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALK------------------ALEAELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGT 131 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCcccCeEeeecCC
Confidence 35677777778777777777663 45666666777777665322 3444777775
No 283
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.65 E-value=3.9e+02 Score=29.51 Aligned_cols=55 Identities=31% Similarity=0.504 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 008696 288 EEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK 342 (557)
Q Consensus 288 eEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k 342 (557)
+++..+-..|.+.++.-++.....-++++.++..+...|+..-++|+...++|.+
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666666666666666777777777666666666666665555544
No 284
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.64 E-value=1.9e+02 Score=25.94 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhHH------hhhhhhHHHhhhhHHHHhh
Q 008696 396 ALSKILQLEKQLDAK------QKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 396 ~~~ki~~LekqL~~k------Q~LELEi~qLkg~L~Vmkh 429 (557)
.-.++.++|.+++.= +.|+++|.+++|.+..|.-
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467788888887653 7899999999999987754
No 285
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.42 E-value=1.2e+03 Score=26.99 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccc
Q 008696 476 ELQEARRELIQGLSDLIGARTNIGVK 501 (557)
Q Consensus 476 ELqeARkelI~gl~~~~~~~~~IgiK 501 (557)
|.|..-+.|-+-|.++.+-+.+||+-
T Consensus 404 eaq~~~~slek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 404 EAQGIFKSLEKTLRQYDSLIQNITRS 429 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555555555544444445544
No 286
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=23.10 E-value=4.4e+02 Score=27.86 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHH
Q 008696 391 REKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKE 470 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ke 470 (557)
+||+++.++..++-..-+..|-|-.+|++|++.|. .....+..++.. .+.......+++-...|--..
T Consensus 151 ~ekd~~i~~~~~~~e~d~rnq~l~~~i~~l~~~l~-----------~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~ 218 (264)
T PF07246_consen 151 EEKDQLIKEKTQERENDRRNQILSHEISNLTNELS-----------NLRNDIDKFQER-EDEKILHEELEARESGLRNES 218 (264)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHHHHhhhhHH-----------Hhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHH
Q ss_pred hhccHHHHHHHHHHHH
Q 008696 471 RQSNDELQEARRELIQ 486 (557)
Q Consensus 471 r~sndELqeARkelI~ 486 (557)
+.-.+||++|....+.
T Consensus 219 ~~l~~el~~aK~~~~~ 234 (264)
T PF07246_consen 219 KWLEHELSDAKEDMIR 234 (264)
T ss_pred HHHHHHHHHHHHHHHH
No 287
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=23.04 E-value=98 Score=20.67 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=12.9
Q ss_pred HHhhhhhhHHHhhhhHHHH
Q 008696 409 AKQKLEMEIEDLKGKLEVM 427 (557)
Q Consensus 409 ~kQ~LELEi~qLkg~L~Vm 427 (557)
+||+||-+-+.|....++.
T Consensus 2 akk~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhc
Confidence 5677777777777666654
No 288
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.00 E-value=9.6e+02 Score=25.75 Aligned_cols=106 Identities=22% Similarity=0.376 Sum_probs=56.1
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Q 008696 320 EKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALS- 398 (557)
Q Consensus 320 ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~- 398 (557)
+.|-.+|+--++|=.-|-=+|+-++|--.-.++|.+.++-+- |++.- -.-.++...+.-.+-++.+..
T Consensus 21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~---------s~LkR--Enq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY---------SALKR--ENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh---------hhhhh--hhhhHHHHHHHHHHHHHHhhHH
Confidence 334444444445555566667777776666666666665542 22211 122233333333333333322
Q ss_pred ------HHHHHHHHhhH----HhhhhhhHHHhhhhHHHHhhcCCCCcH
Q 008696 399 ------KILQLEKQLDA----KQKLEMEIEDLKGKLEVMKHLGDEDDA 436 (557)
Q Consensus 399 ------ki~~LekqL~~----kQ~LELEi~qLkg~L~Vmkhm~~~~d~ 436 (557)
.+-=||-||.. -..||-||.+++..|+=.-.-....|.
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~ 137 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDV 137 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 23345666653 457899999999999866554444443
No 289
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=22.71 E-value=9.5e+02 Score=25.60 Aligned_cols=98 Identities=23% Similarity=0.251 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhc
Q 008696 290 KDRLHYAFVEETRKMQRLARDN---VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNN 366 (557)
Q Consensus 290 k~~l~~~yneE~~kmQ~~a~~~---~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~ 366 (557)
|..+...|..-|..||....++ ..+...+|..|+.-|.+-..-.+.|...++++-...+-+-+-+
T Consensus 105 R~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~------------ 172 (309)
T PF09728_consen 105 RKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLA------------ 172 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------
Confidence 4466777777777777776655 3556777878777777777777777766666444333322221
Q ss_pred hhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 367 SLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLE 404 (557)
Q Consensus 367 ~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~Le 404 (557)
.|.++| +...+-...+.+.++++.++....++.
T Consensus 173 ---~AKl~q--~~~~~~~e~~k~~~~~~~~l~~~~~~~ 205 (309)
T PF09728_consen 173 ---EAKLEQ--QQEEAEQEKEKAKQEKEILLEEAAQVQ 205 (309)
T ss_pred ---HHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 233333 444444555777777777777776433
No 290
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.57 E-value=4.2e+02 Score=27.18 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=10.4
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHh
Q 008696 320 EKLSCELETKKKKLDSWSKQLNKREA 345 (557)
Q Consensus 320 ekl~~eLe~k~~eL~~r~k~L~k~~~ 345 (557)
.++..+++--..+|+++.++|++.+.
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~ 179 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQK 179 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444333
No 291
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=22.48 E-value=1.1e+02 Score=29.87 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=35.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh----hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR----FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~----~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
|||+-|+=.-+.. +=+ ..+.|+. |+.|.|.....+-|.+ .|||-|..--+.-+-..+|
T Consensus 84 pPMsTIVVRWlkk-nm~----~~edl~sV~~~Ls~fGpI~SVT~cGrq----savVvF~d~~SAC~Av~Af 145 (166)
T PF15023_consen 84 PPMSTIVVRWLKK-NMQ----PTEDLKSVIQRLSVFGPIQSVTLCGRQ----SAVVVFKDITSACKAVSAF 145 (166)
T ss_pred CCceeEEeehhhh-cCC----hHHHHHHHHHHHHhcCCcceeeecCCc----eEEEEehhhHHHHHHHHhh
Confidence 9998877332211 111 1233443 7789999888887654 5899998776655444444
No 292
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=22.47 E-value=36 Score=30.95 Aligned_cols=15 Identities=27% Similarity=0.820 Sum_probs=11.4
Q ss_pred cCCeeeccCCCCCCc
Q 008696 36 VNGTLRCPFCSGKKK 50 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk 50 (557)
.+-+|.||||---+.
T Consensus 20 ldt~FnClfcnHek~ 34 (109)
T KOG3214|consen 20 LDTQFNCLFCNHEKS 34 (109)
T ss_pred hheeeccCccccccc
Confidence 456899999985543
No 293
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.33 E-value=2.8e+02 Score=25.03 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=0.0
Q ss_pred hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh----hhhhhHHHh
Q 008696 345 ALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQ----KLEMEIEDL 420 (557)
Q Consensus 345 ~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ----~LELEi~qL 420 (557)
......|..++.++.+-..+-..|--+=.++ .=+.|..-+++...+..+..+|+++|..+. .|..++..|
T Consensus 4 ~~e~~~r~~ae~~~~~ie~ElEeLTasLFeE------AN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~L 77 (100)
T PF06428_consen 4 EEERERREEAEQEKEQIESELEELTASLFEE------ANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKEL 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHH
Q 008696 421 KGKLEVM 427 (557)
Q Consensus 421 kg~L~Vm 427 (557)
|-.++-|
T Consensus 78 K~v~~~~ 84 (100)
T PF06428_consen 78 KTVMESM 84 (100)
T ss_dssp HHCTTT-
T ss_pred HHHHHHc
No 294
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=21.87 E-value=1.2e+02 Score=34.22 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=39.5
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccC-C-ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHhhhhhcC
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFK-P-VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEKAFDADH 194 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~-p-~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~fek~Fe~~~ 194 (557)
+.|.|||.+ =+| +.|+| |+.-. - .=|..|....| .+|+|||+|.. -.+..-|+.--+-|+..+
T Consensus 47 vfItNIpyd---~rW-----qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~-~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 47 VFITNIPYD---YRW-----QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKD-PENVQKALEKLNKYEVNG 113 (608)
T ss_pred EEEecCcch---hhh-----HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeC-HHHHHHHHHHhhhccccC
Confidence 779999983 344 56788 66422 2 23445556666 78999999964 455555555555555443
No 295
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=21.81 E-value=8.3e+02 Score=24.62 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHh
Q 008696 312 VRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQK 353 (557)
Q Consensus 312 ~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~k 353 (557)
+.-.-.|-++|+.+||-.+...+...++..++...-..|+.+
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k 177 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTK 177 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556777888888888888888888777776655444443
No 296
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=21.77 E-value=31 Score=26.23 Aligned_cols=20 Identities=35% Similarity=0.997 Sum_probs=13.3
Q ss_pred ee-cCCeeeccCCCCCCcCccccH
Q 008696 34 VR-VNGTLRCPFCSGKKKQDYKHK 56 (557)
Q Consensus 34 Vk-~~~~~~CP~C~gkkk~~y~~~ 56 (557)
++ ++| |.||.|... ..|.+.
T Consensus 13 ~RW~~g-~~CP~Cg~~--~~~~~~ 33 (46)
T PF12760_consen 13 IRWPDG-FVCPHCGST--KHYRLK 33 (46)
T ss_pred hcCCCC-CCCCCCCCe--eeEEeC
Confidence 45 677 889999754 345443
No 297
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.60 E-value=9.2e+02 Score=25.04 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=10.1
Q ss_pred HHHHHHHhhHHHHHHHhhhH
Q 008696 315 ILEEQEKLSCELETKKKKLD 334 (557)
Q Consensus 315 i~~e~ekl~~eLe~k~~eL~ 334 (557)
+-.+.-+++.+++++.+|+.
T Consensus 118 ~~~ei~k~r~e~~~ml~evK 137 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQEVK 137 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555543
No 298
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=21.48 E-value=1.4e+02 Score=32.77 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=32.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeee-ccC--CCCcceEEEEeCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIF-WNE--ENPTAQAVVKFNN 175 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l-~~~--~Gh~G~aIv~F~~ 175 (557)
.+.|-|+|. ..+...|.+ |..|.++....+ ... ..+.|+|.|+|.+
T Consensus 297 ~l~v~nlp~--------~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 297 RIYIGNLPL--------YLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred EEEEeCCCC--------CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 566778875 346778899 999998765444 332 3378999999965
No 299
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=21.45 E-value=3.4e+02 Score=29.02 Aligned_cols=44 Identities=34% Similarity=0.394 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hHHhhhhhhHHHhhhhHH
Q 008696 382 VLRLVEEQKREKEEALSKILQLEKQL----DAKQKLEMEIEDLKGKLE 425 (557)
Q Consensus 382 vlkLve~hkrEke~~~~ki~~LekqL----~~kQ~LELEi~qLkg~L~ 425 (557)
+.|.=++++.|+|+++..+.-||+.= ++-+.||-||+.||--+.
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555778888899888888777643 344566667776665543
No 300
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=21.44 E-value=2e+02 Score=24.81 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=26.1
Q ss_pred cCCchhHHhHHHHHHHHHHHhhcCCCC-cccEEEe
Q 008696 518 KFPLEEAQVEASTLCSLWQENLKATEW-HPFKIIH 551 (557)
Q Consensus 518 k~~~~~~~~~a~~lcs~Wq~~l~dp~W-hPFkvv~ 551 (557)
.|.++++...+..+|....+.|+.-.. .|||.|.
T Consensus 19 ~Y~~~~~~~~~~~I~~~i~~~lk~~~~~~ryK~iv 53 (101)
T PF03645_consen 19 KYDPEKAQQWSKEISDEILERLKKLGYSKRYKFIV 53 (101)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHCC--T-SCEEEE
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 577889999999999999999999998 9999883
No 301
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.25 E-value=1.8e+02 Score=31.64 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHhHHH
Q 008696 436 AAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (557)
Q Consensus 436 ~~~~~k~~~l~~~L~ek~~el~~~e~~nq~ 465 (557)
..+..+|+++.+.+.+.++.++.++.-.+.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 345667777777777777666655444433
No 302
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=21.09 E-value=1.3e+03 Score=26.76 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=46.5
Q ss_pred hHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHH
Q 008696 250 SKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLA--RDNVRRILEEQEKLSCELE 327 (557)
Q Consensus 250 k~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a--~~~~~ri~~e~ekl~~eLe 327 (557)
+.++++..+..++...|-..--+..-+...+.-|.+.|||+-+|...-..==+|+-..+ -+..-.|+........+|+
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~ 274 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT 274 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33445545555555555555555555555555556666665544332221111111111 1111223333333344455
Q ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHhh
Q 008696 328 TKKKKLDSWSKQLNKREALTERERQKL 354 (557)
Q Consensus 328 ~k~~eL~~r~k~L~k~~~~~~~er~kL 354 (557)
+..+||+-+--++-.-.+.++.|-++|
T Consensus 275 aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 275 AELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555566655555555555555444444
No 303
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=21.07 E-value=2e+02 Score=22.39 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=26.8
Q ss_pred HHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhH
Q 008696 409 AKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESK 452 (557)
Q Consensus 409 ~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek 452 (557)
.|.++|+.+-+|+.+|+- .|-.+.+|..+++.++..|..+
T Consensus 5 rkR~IElk~~elrd~LEe----~g~~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 5 RKREIELKCLELRDELEE----QGYSEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH----HT--HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhc
Confidence 345677777777777775 1225678889999988888554
No 304
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.03 E-value=6.7e+02 Score=28.12 Aligned_cols=77 Identities=25% Similarity=0.276 Sum_probs=47.4
Q ss_pred hhhchhHhhHHHHHHhhHHHHHHHHHHH-----------HHHH------HHHHHHHHHHHHhhHHhh--hhhhHHHhh--
Q 008696 363 LRNNSLQLASMEQKKADENVLRLVEEQK-----------REKE------EALSKILQLEKQLDAKQK--LEMEIEDLK-- 421 (557)
Q Consensus 363 ~~~~~l~lA~~Eq~kade~vlkLve~hk-----------rEke------~~~~ki~~LekqL~~kQ~--LELEi~qLk-- 421 (557)
+.|--|.-|-||.-|+.|..||.-..-| +|++ =+++-+-+||+||..-.+ ||-.|++-+
T Consensus 67 ~~nrrlie~~me~fk~ve~~mk~k~fske~ls~~~~~dpke~~k~d~i~~i~~~~~el~~q~e~~ea~e~e~~~erh~~h 146 (548)
T COG5665 67 MTNRRLIENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELKKRDQVLFIHDCLDELQKQLEQYEAQENEEQTERHEFH 146 (548)
T ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHhhHhhccCcccCChhHhccccceehHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455666677888888888887765544 2333 268889999999886544 444444433
Q ss_pred -hhH-HHHhhcCC-CCcHHHH
Q 008696 422 -GKL-EVMKHLGD-EDDAAVQ 439 (557)
Q Consensus 422 -g~L-~Vmkhm~~-~~d~~~~ 439 (557)
.+| .+|+.++. +-|++-.
T Consensus 147 ~~~le~i~~~l~n~~~~pe~v 167 (548)
T COG5665 147 IANLENILKKLQNNEMDPEPV 167 (548)
T ss_pred HHHHHHHHHHHhccCCChhhH
Confidence 333 36777644 3355544
No 305
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.81 E-value=3e+02 Score=31.30 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=8.5
Q ss_pred cccCCCCChhHHHH
Q 008696 501 KRLGEIDPKPFQDA 514 (557)
Q Consensus 501 KrmGeld~kpF~~a 514 (557)
=+-|+|+...|.-+
T Consensus 190 ~~~~~~~~~~f~~~ 203 (475)
T PRK13729 190 PVPNRIQRKTFTYN 203 (475)
T ss_pred CCCCceeEEEeecc
Confidence 35666777777543
No 306
>PF02049 FliE: Flagellar hook-basal body complex protein FliE; InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein []. All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella []. The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined []. The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar []. Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis []. From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits []. FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway []. On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures [].; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum
Probab=20.79 E-value=3.7e+02 Score=23.52 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=30.3
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008696 267 EDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ 305 (557)
Q Consensus 267 ~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ 305 (557)
..+-++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 58 ~dl~~vmia~~kA~lslq~~vqVRnK~v~AYqE-ImrMq 95 (96)
T PF02049_consen 58 VDLHEVMIAMQKASLSLQLAVQVRNKAVEAYQE-IMRMQ 95 (96)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 556666666678899999999999999999987 54454
No 307
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=20.69 E-value=1.1e+02 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=34.6
Q ss_pred hhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHH
Q 008696 412 KLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKI 453 (557)
Q Consensus 412 ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~ 453 (557)
.|+-|---..|-.+|||.|-.|+|++.++.|..-..+-+++.
T Consensus 175 sl~ke~DP~~glmnvmKk~YeDGD~~mK~tIaKAWtesr~k~ 216 (224)
T KOG3260|consen 175 SLDKETDPSEGLMNVMKKIYEDGDDDMKQTIAKAWTESREKQ 216 (224)
T ss_pred cccccCChHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhhh
Confidence 455555567899999999988999999999999888877664
No 308
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=20.66 E-value=2.5e+02 Score=25.05 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=40.2
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeecc-----CCCCcceEEEEeCCChhchhhHHHHHhhhh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWN-----EENPTAQAVVKFNNDWNGFMQASDFEKAFD 191 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~-----~~Gh~G~aIv~F~~dw~Gf~~A~~fek~Fe 191 (557)
|+.|-|||... +-..|.+ +....++...-+|- .....|||.|-|.+- ..|.+|.+.|.
T Consensus 3 TvMirNIPn~~--------t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~----~~~~~F~~~f~ 66 (97)
T PF04059_consen 3 TVMIRNIPNKY--------TQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSP----QAAIRFYKAFN 66 (97)
T ss_pred eEEEecCCCCC--------CHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCH----HHHHHHHHHHc
Confidence 67899999855 3445555 44444555555553 345789999999764 57889999998
No 309
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.66 E-value=1e+03 Score=25.29 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=4.7
Q ss_pred CCCcccEEE--eecC
Q 008696 542 TEWHPFKII--HVEG 554 (557)
Q Consensus 542 p~WhPFkvv--~v~g 554 (557)
+-=-||+|. +|+|
T Consensus 263 ~~~lPy~i~~~~I~~ 277 (314)
T PF04111_consen 263 SFELPYKIDKDKIGG 277 (314)
T ss_dssp ----SS-ECTTEECT
T ss_pred ccccceeccCCccCC
Confidence 345688774 4444
No 310
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.62 E-value=1.8e+03 Score=28.04 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhh-hhhchhHhhHHHHHHhhHHHHHHHH
Q 008696 309 RDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQND-LRNNSLQLASMEQKKADENVLRLVE 387 (557)
Q Consensus 309 ~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~-~~~~~l~lA~~Eq~kade~vlkLve 387 (557)
-...++-++.|.+|..+|...-.+++.=..+-.......+.-++-+..-+++-. .+.+.+=--++-||++.---....+
T Consensus 257 ~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~ 336 (1109)
T PRK10929 257 PKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQ 336 (1109)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccc
Confidence 334777778899999999888887777666555555555555555443333322 1222222233444443333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhh
Q 008696 388 EQKREKEEALSKILQLEKQLDAKQK 412 (557)
Q Consensus 388 ~hkrEke~~~~ki~~LekqL~~kQ~ 412 (557)
.-..+.-++.-+..++++|+|+=+.
T Consensus 337 ~l~~~IAdlRl~~f~~~q~~~~l~~ 361 (1109)
T PRK10929 337 QLDTEMAQLRVQRLRYEDLLNKQPQ 361 (1109)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555666667777777776554
No 311
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=20.56 E-value=53 Score=22.08 Aligned_cols=11 Identities=27% Similarity=1.072 Sum_probs=9.1
Q ss_pred cCCeeeccCCC
Q 008696 36 VNGTLRCPFCS 46 (557)
Q Consensus 36 ~~~~~~CP~C~ 46 (557)
....|.||+|.
T Consensus 11 ~~k~~~C~~C~ 21 (26)
T PF13465_consen 11 GEKPYKCPYCG 21 (26)
T ss_dssp SSSSEEESSSS
T ss_pred CCCCCCCCCCc
Confidence 45679999997
No 312
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.47 E-value=1.3e+03 Score=26.38 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHhhhhhhHHHhhhhHH-HHhhcCC
Q 008696 409 AKQKLEMEIEDLKGKLE-VMKHLGD 432 (557)
Q Consensus 409 ~kQ~LELEi~qLkg~L~-Vmkhm~~ 432 (557)
+.+..+..|+.|+.+|. +|=+|+.
T Consensus 429 ~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHhHheehhh
Confidence 34455556666666553 5555543
No 313
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=20.47 E-value=9e+02 Score=24.48 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=11.4
Q ss_pred hhhHHHhhhhHHHHhhcCCCCcHHHH
Q 008696 414 EMEIEDLKGKLEVMKHLGDEDDAAVQ 439 (557)
Q Consensus 414 ELEi~qLkg~L~Vmkhm~~~~d~~~~ 439 (557)
|..+..|+.-|+=+++....+|..++
T Consensus 174 e~~~~~l~~~le~~~~~~~~~~e~f~ 199 (247)
T PF06705_consen 174 ESKLSELRSELEEVKRRREKGDEQFQ 199 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444444444444444333344444
No 314
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.45 E-value=7.2e+02 Score=23.36 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 008696 314 RILEEQEKLSCELETKKKKLDSWSKQLNKRE 344 (557)
Q Consensus 314 ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~ 344 (557)
..+.+-.++...++.++-++|+-...+.+..
T Consensus 128 ~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~ 158 (229)
T PF03114_consen 128 KEFKEIKKLIKKREKKRLDYDSARSKLEKLR 158 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666555555544
No 315
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=20.33 E-value=8.4e+02 Score=24.08 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=13.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHH
Q 008696 370 LASMEQKKADENVLRLVEEQK 390 (557)
Q Consensus 370 lA~~Eq~kade~vlkLve~hk 390 (557)
.|.|-+..|.+-+|+-++..-
T Consensus 143 iAglT~eEAk~~Ll~~le~e~ 163 (201)
T PF12072_consen 143 IAGLTAEEAKEILLEKLEEEA 163 (201)
T ss_pred HhCCCHHHHHHHHHHHHHHHH
Confidence 455555557777777776553
No 316
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.31 E-value=8.1e+02 Score=26.70 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=34.2
Q ss_pred hhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 008696 413 LEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMES 461 (557)
Q Consensus 413 LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~ 461 (557)
+.-.+.+|+.-..-+|+.+.....+..+.+++|++++.+...-+.+||+
T Consensus 41 I~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 41 ISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEA 89 (330)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 3444555666666677765555667778888888888888888877773
No 317
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=20.16 E-value=3.5e+02 Score=24.80 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=44.2
Q ss_pred chhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008696 226 PIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ 305 (557)
Q Consensus 226 ~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ 305 (557)
..|..|..- ++++...+..-.......+..+ -.+.++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 40 sF~~~L~~a-----i~~vn~~q~~a~~~~~~~~~G~-----~dlhevmiA~~kA~lslq~~vqVRNKlVeAYqE-IMrMq 108 (109)
T PRK00790 40 SFASVLGQM-----AGDAVQTLKAAEATSIQAIKGK-----ADTREVVDAVMQAEQALQTAVAIRDKVVEAYLE-ILRMP 108 (109)
T ss_pred CHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 566776652 4444333333333333333333 246677777788889999999999999999987 54454
Done!