Query 008696
Match_columns 557
No_of_seqs 155 out of 177
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:36:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 1E-65 3.5E-70 486.1 12.2 167 110-277 2-172 (172)
2 2v71_A Nuclear distribution pr 95.5 1.9 6.5E-05 41.4 20.8 157 254-425 11-171 (189)
3 1i84_S Smooth muscle myosin he 95.3 0.052 1.8E-06 64.4 10.3 9 19-27 554-562 (1184)
4 1i84_S Smooth muscle myosin he 95.1 0.083 2.8E-06 62.7 11.2 16 167-182 769-784 (1184)
5 2fxo_A Myosin heavy chain, car 92.5 4.7 0.00016 36.0 15.2 76 395-484 45-120 (129)
6 2dfs_A Myosin-5A; myosin-V, in 92.3 3.4 0.00012 48.9 17.9 22 439-460 1022-1043(1080)
7 3oja_B Anopheles plasmodium-re 92.3 2.7 9.2E-05 45.2 15.9 16 391-406 565-580 (597)
8 3oja_B Anopheles plasmodium-re 92.3 2 6.7E-05 46.2 14.8 54 306-359 512-565 (597)
9 1wez_A HnRNP H', FTP-3, hetero 89.4 0.49 1.7E-05 39.8 5.4 58 120-186 15-74 (102)
10 3ghg_A Fibrinogen alpha chain; 88.6 3.5 0.00012 45.1 12.4 92 241-332 52-146 (562)
11 2cq3_A RNA-binding protein 9; 87.8 1 3.5E-05 37.1 6.2 48 121-176 16-65 (103)
12 2dfs_A Myosin-5A; myosin-V, in 87.3 9.1 0.00031 45.3 15.9 14 323-336 923-936 (1080)
13 3vkg_A Dynein heavy chain, cyt 87.2 67 0.0023 42.5 24.6 24 320-343 1937-1960(3245)
14 2dnn_A RNA-binding protein 12; 86.7 0.78 2.7E-05 39.4 5.0 60 121-189 17-78 (109)
15 3vkg_A Dynein heavy chain, cyt 86.4 99 0.0034 41.0 27.9 48 437-484 2053-2103(3245)
16 2dgw_A Probable RNA-binding pr 85.7 1.2 4.2E-05 35.7 5.5 58 120-186 10-69 (91)
17 2fxo_A Myosin heavy chain, car 84.5 21 0.00073 31.6 16.6 96 259-359 19-114 (129)
18 2hgm_A HNRPF protein, heteroge 84.4 1.2 4E-05 39.6 5.2 56 121-185 43-102 (126)
19 2lmi_A GRSF-1, G-rich sequence 84.3 1.3 4.5E-05 37.0 5.2 60 120-188 11-76 (107)
20 2cpy_A RNA-binding protein 12; 84.1 1.3 4.3E-05 37.6 5.0 57 121-186 16-76 (114)
21 3ghg_A Fibrinogen alpha chain; 83.4 11 0.00039 41.2 13.0 103 227-333 52-161 (562)
22 2dha_A FLJ20171 protein; RRM d 83.1 1.1 3.8E-05 39.4 4.4 58 120-186 23-87 (123)
23 1x4a_A Splicing factor, argini 82.6 2 6.9E-05 35.7 5.7 56 120-184 22-78 (109)
24 1wg5_A Heterogeneous nuclear r 82.6 1.7 5.9E-05 36.1 5.2 56 121-185 16-75 (104)
25 3na7_A HP0958; flagellar bioge 82.5 38 0.0013 33.1 20.5 32 380-411 93-124 (256)
26 2db1_A Heterogeneous nuclear r 82.4 1.8 6E-05 37.1 5.3 59 120-187 17-81 (118)
27 2cqi_A Nucleolysin TIAR; RNA r 82.3 1.8 6.2E-05 35.5 5.2 57 120-185 15-73 (103)
28 3d2w_A TAR DNA-binding protein 81.8 2.3 7.9E-05 34.6 5.6 47 120-177 11-59 (89)
29 2hgn_A Heterogeneous nuclear r 81.1 0.99 3.4E-05 40.6 3.4 56 120-184 46-103 (139)
30 2err_A Ataxin-2-binding protei 80.6 2.4 8.3E-05 35.6 5.5 51 121-179 30-82 (109)
31 2e5j_A Methenyltetrahydrofolat 80.4 1.9 6.3E-05 35.2 4.6 48 121-178 20-68 (97)
32 2ywk_A Putative RNA-binding pr 79.4 3.2 0.00011 33.3 5.6 56 121-185 17-75 (95)
33 4f25_A Polyadenylate-binding p 78.9 1.9 6.5E-05 36.6 4.3 53 123-184 8-62 (115)
34 3lqv_A PRE-mRNA branch site pr 78.4 3.2 0.00011 34.7 5.5 49 121-177 9-58 (115)
35 2v71_A Nuclear distribution pr 78.4 49 0.0017 31.7 19.7 142 315-484 36-177 (189)
36 2cpe_A RNA-binding protein EWS 78.1 3.4 0.00012 34.4 5.6 57 120-185 15-83 (113)
37 2e5h_A Zinc finger CCHC-type a 77.8 8.6 0.00029 30.6 7.8 48 121-176 17-68 (94)
38 1wel_A RNA-binding protein 12; 77.8 2.8 9.7E-05 35.8 5.1 57 121-186 26-86 (124)
39 1wi8_A EIF-4B, eukaryotic tran 77.5 2.5 8.6E-05 34.8 4.5 59 120-187 15-77 (104)
40 2ek1_A RNA-binding protein 12; 77.0 2.5 8.5E-05 33.9 4.3 57 120-185 15-75 (95)
41 1deq_A Fibrinogen (alpha chain 76.9 42 0.0014 35.4 14.3 92 242-333 56-150 (390)
42 3ulh_A THO complex subunit 4; 76.8 3.7 0.00013 33.8 5.4 49 120-176 29-80 (107)
43 2la6_A RNA-binding protein FUS 76.7 6.1 0.00021 32.1 6.6 56 120-184 13-80 (99)
44 4a8x_A RNA-binding protein wit 76.5 2.5 8.5E-05 33.3 4.1 51 120-178 4-59 (88)
45 2dgp_A Bruno-like 4, RNA bindi 76.0 5.6 0.00019 32.6 6.3 60 120-188 13-77 (106)
46 2khc_A Testis-specific RNP-typ 75.8 11 0.00039 31.4 8.3 50 121-178 41-94 (118)
47 1c1g_A Tropomyosin; contractIl 75.7 48 0.0016 30.3 32.6 41 442-482 218-258 (284)
48 2hgl_A HNRPF protein, heteroge 74.6 3.1 0.00011 37.1 4.7 57 121-186 45-107 (136)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 74.2 26 0.0009 29.7 10.4 50 120-177 63-116 (140)
50 2dgv_A HnRNP M, heterogeneous 74.1 3.5 0.00012 32.8 4.4 49 121-177 9-59 (92)
51 2dnz_A Probable RNA-binding pr 73.9 6.5 0.00022 31.4 6.0 49 121-177 6-58 (95)
52 3qne_A Seryl-tRNA synthetase, 73.2 27 0.00094 37.8 12.3 58 432-507 70-135 (485)
53 2dng_A Eukaryotic translation 72.5 4.1 0.00014 33.4 4.6 58 120-186 15-75 (103)
54 2cqp_A RNA-binding protein 12; 72.1 3.8 0.00013 33.1 4.2 50 120-177 15-68 (98)
55 2cph_A RNA binding motif prote 72.0 6 0.0002 32.4 5.5 50 121-178 16-70 (107)
56 1rk8_A CG8781-PA, CG8781-PA pr 71.9 4.2 0.00014 36.5 4.9 56 120-184 72-131 (165)
57 3nmr_A Cugbp ELAV-like family 71.1 5 0.00017 35.0 5.1 50 121-178 96-148 (175)
58 2rs2_A Musashi-1, RNA-binding 70.7 6.5 0.00022 32.9 5.5 57 120-185 25-85 (109)
59 1x4e_A RNA binding motif, sing 70.3 8.2 0.00028 30.2 5.8 56 121-185 6-65 (85)
60 2ocy_A RAB guanine nucleotide 70.0 70 0.0024 29.7 18.7 70 345-430 75-144 (154)
61 2wbr_A GW182, gawky, LD47780P; 69.9 4.2 0.00014 34.5 4.1 41 125-176 12-53 (89)
62 2d9p_A Polyadenylate-binding p 69.8 6 0.00021 32.3 5.0 48 121-176 16-65 (103)
63 2lxi_A RNA-binding protein 10; 69.4 4.2 0.00014 33.1 3.9 48 122-177 3-55 (91)
64 3md1_A Nuclear and cytoplasmic 69.4 6.6 0.00023 30.5 5.0 49 121-177 2-54 (83)
65 1x5s_A Cold-inducible RNA-bind 69.4 5.9 0.0002 32.2 4.8 49 120-176 12-64 (102)
66 2x1f_A MRNA 3'-END-processing 69.4 7.2 0.00025 31.4 5.3 48 122-177 4-55 (96)
67 2xs2_A Deleted in azoospermia- 69.0 6 0.0002 32.2 4.8 57 120-185 9-68 (102)
68 2dnl_A Cytoplasmic polyadenyla 69.0 4.8 0.00017 33.9 4.4 48 122-177 10-63 (114)
69 2dit_A HIV TAT specific factor 68.9 3.7 0.00013 34.5 3.6 57 121-178 16-76 (112)
70 1x4h_A RNA-binding protein 28; 68.8 15 0.00051 30.1 7.3 49 121-177 16-68 (111)
71 1uaw_A Mouse-musashi-1; RNP-ty 68.8 6.6 0.00023 30.0 4.8 55 122-185 2-60 (77)
72 1x5t_A Splicing factor 3B subu 68.4 8.3 0.00028 30.8 5.5 48 121-176 6-58 (96)
73 1x4c_A Splicing factor, argini 68.1 7.7 0.00026 32.2 5.4 53 120-185 15-68 (108)
74 2dgs_A DAZ-associated protein 68.0 10 0.00035 30.6 6.0 56 122-186 12-71 (99)
75 2cq0_A Eukaryotic translation 67.9 6.4 0.00022 32.1 4.8 50 120-177 15-68 (103)
76 2fc9_A NCL protein; structure 67.8 5.8 0.0002 32.2 4.5 55 120-185 15-71 (101)
77 1wf0_A TDP-43, TAR DNA-binding 67.7 6 0.00021 31.4 4.5 46 122-177 7-53 (88)
78 3beg_B Splicing factor, argini 67.3 11 0.00037 31.8 6.3 53 120-185 16-69 (115)
79 1oo0_B CG8781-PA, drosophila Y 67.2 8 0.00027 31.9 5.3 49 121-177 27-79 (110)
80 2dnm_A SRP46 splicing factor; 67.0 8.4 0.00029 31.4 5.3 51 120-178 13-67 (103)
81 2cq4_A RNA binding motif prote 66.7 17 0.00057 30.2 7.2 60 120-188 25-88 (114)
82 2cpf_A RNA binding motif prote 66.6 4.8 0.00016 32.5 3.7 48 121-176 6-60 (98)
83 1p27_B RNA-binding protein 8A; 66.6 7.1 0.00024 31.9 4.8 49 121-177 24-76 (106)
84 2kt5_A RNA and export factor-b 66.6 9.1 0.00031 32.4 5.6 56 121-185 36-94 (124)
85 2lkz_A RNA-binding protein 5; 66.5 7 0.00024 32.5 4.8 49 122-178 11-65 (95)
86 2ki2_A SS-DNA binding protein 66.5 7.8 0.00027 30.7 4.9 47 123-177 4-54 (90)
87 2cqb_A Peptidyl-prolyl CIS-tra 66.0 7.9 0.00027 31.4 5.0 49 121-177 13-65 (102)
88 1x5u_A Splicing factor 3B subu 66.0 8.5 0.00029 31.4 5.2 50 120-177 15-68 (105)
89 2jrs_A RNA-binding protein 39; 65.7 6.8 0.00023 32.8 4.6 50 120-177 26-79 (108)
90 3sde_A Paraspeckle component 1 65.1 6.6 0.00023 37.7 5.0 51 121-179 97-150 (261)
91 2krb_A Eukaryotic translation 65.0 9.3 0.00032 29.8 5.0 54 122-177 3-58 (81)
92 3md3_A Nuclear and cytoplasmic 64.9 10 0.00035 32.6 5.7 54 122-184 2-58 (166)
93 2cqd_A RNA-binding region cont 64.5 11 0.00038 31.4 5.7 48 121-176 18-69 (116)
94 3bs9_A Nucleolysin TIA-1 isofo 64.2 9.7 0.00033 29.8 5.0 48 121-176 7-58 (87)
95 2jwn_A Embryonic polyadenylate 64.0 9.8 0.00034 32.1 5.4 59 120-187 36-98 (124)
96 2j76_E EIF-4B, EIF4B, eukaryot 63.8 6.9 0.00024 32.0 4.2 58 120-186 19-80 (100)
97 3s7r_A Heterogeneous nuclear r 63.6 11 0.00037 29.6 5.2 57 120-185 11-71 (87)
98 1s79_A Lupus LA protein; RRM, 63.5 11 0.00039 31.5 5.6 56 121-185 12-70 (103)
99 2hvz_A Splicing factor, argini 63.4 7.5 0.00026 31.6 4.3 57 122-189 2-60 (101)
100 2cqc_A Arginine/serine-rich sp 62.9 8.7 0.0003 30.6 4.6 49 121-177 16-68 (95)
101 1iqt_A AUF1, heterogeneous nuc 62.8 5.8 0.0002 30.3 3.3 54 123-185 2-59 (75)
102 2dnh_A Bruno-like 5, RNA bindi 62.1 12 0.00041 30.4 5.4 50 120-177 15-67 (105)
103 1x4b_A Heterogeneous nuclear r 61.9 11 0.00037 31.4 5.2 58 120-186 27-88 (116)
104 1whw_A Hypothetical protein ri 61.8 14 0.00047 29.8 5.6 49 121-177 9-61 (99)
105 2fc8_A NCL protein; structure 61.6 8.2 0.00028 31.3 4.2 54 121-185 16-72 (102)
106 2cqg_A TDP-43, TAR DNA-binding 61.5 10 0.00034 30.9 4.8 56 121-185 16-75 (103)
107 3bas_A Myosin heavy chain, str 61.2 71 0.0024 26.6 11.1 63 261-342 22-84 (89)
108 2do0_A HnRNP M, heterogeneous 61.1 10 0.00036 31.3 4.9 47 122-176 17-66 (114)
109 3mdf_A Peptidyl-prolyl CIS-tra 60.8 12 0.0004 29.2 4.9 49 121-177 8-60 (85)
110 2mss_A Protein (musashi1); RNA 60.5 13 0.00043 28.4 4.9 54 123-185 2-59 (75)
111 2do4_A Squamous cell carcinoma 60.2 14 0.00049 29.8 5.5 50 120-177 17-69 (100)
112 2dgo_A Cytotoxic granule-assoc 60.1 12 0.00039 31.2 5.0 48 121-176 16-67 (115)
113 1fjc_A Nucleolin RBD2, protein 60.1 5.5 0.00019 32.0 2.9 47 121-177 17-64 (96)
114 2jvr_A Nucleolar protein 3; RN 59.9 8.9 0.0003 32.9 4.3 47 120-175 28-76 (111)
115 2dnq_A RNA-binding protein 4B; 59.9 13 0.00043 29.6 5.0 43 121-176 9-52 (90)
116 3ucg_A Polyadenylate-binding p 59.9 14 0.00047 29.0 5.2 57 122-187 8-68 (89)
117 1why_A Hypothetical protein ri 59.6 13 0.00044 29.9 5.1 53 121-185 18-71 (97)
118 4fxv_A ELAV-like protein 1; RN 59.0 12 0.00043 30.8 5.0 48 122-177 21-72 (99)
119 3ghg_C Fibrinogen gamma chain; 58.5 84 0.0029 33.4 12.3 98 227-338 25-136 (411)
120 2dh8_A DAZ-associated protein 58.3 7.7 0.00026 31.7 3.5 57 121-186 17-77 (105)
121 1x5o_A RNA binding motif, sing 57.9 15 0.00051 30.4 5.3 49 120-176 25-76 (114)
122 2dhg_A TRNA selenocysteine ass 57.6 13 0.00044 30.2 4.8 56 121-185 10-69 (104)
123 1h2v_Z 20 kDa nuclear CAP bind 57.6 12 0.00042 32.9 5.0 57 120-185 39-99 (156)
124 1x4g_A Nucleolysin TIAR; struc 57.4 13 0.00043 30.8 4.8 46 121-177 26-72 (109)
125 2fy1_A RNA-binding motif prote 57.4 16 0.00055 30.9 5.5 48 121-176 8-58 (116)
126 1p1t_A Cleavage stimulation fa 57.1 9.7 0.00033 30.9 3.9 49 121-177 9-61 (104)
127 3nmr_A Cugbp ELAV-like family 57.0 11 0.00038 32.7 4.6 49 122-178 5-59 (175)
128 2div_A TRNA selenocysteine ass 56.9 11 0.00039 30.3 4.3 48 121-176 10-62 (99)
129 2ghp_A U4/U6 snRNA-associated 56.9 13 0.00044 35.8 5.4 57 121-186 42-100 (292)
130 2elu_A Zinc finger protein 406 56.6 3.7 0.00013 29.0 1.0 21 40-63 10-30 (37)
131 3ns6_A Eukaryotic translation 56.3 7.5 0.00026 31.9 3.1 60 122-184 8-71 (100)
132 3ex7_B RNA-binding protein 8A; 56.2 14 0.00048 31.2 4.9 50 120-177 22-75 (126)
133 2ytc_A PRE-mRNA-splicing facto 56.0 16 0.00053 28.5 4.9 44 121-175 13-57 (85)
134 1nu4_A U1A RNA binding domain; 55.8 5.6 0.00019 32.0 2.2 49 121-177 9-62 (97)
135 1whx_A Hypothetical protein ri 55.6 15 0.0005 30.9 4.9 47 121-178 11-58 (111)
136 2cpd_A Apobec-1 stimulating pr 55.6 16 0.00055 29.5 5.0 53 121-185 16-69 (99)
137 2i2y_A Fusion protein consists 55.6 13 0.00046 32.5 4.8 47 121-177 74-121 (150)
138 3tnu_B Keratin, type II cytosk 55.4 1.1E+02 0.0037 26.9 12.2 40 267-306 4-43 (129)
139 1m1j_A Fibrinogen alpha subuni 55.3 2.1E+02 0.0071 31.0 14.5 61 243-303 55-118 (491)
140 2xnq_A Nuclear polyadenylated 55.3 17 0.0006 29.6 5.2 44 122-177 24-68 (97)
141 2cpi_A CCR4-NOT transcription 55.2 20 0.00069 29.8 5.7 50 120-177 15-74 (111)
142 2cpj_A Non-POU domain-containi 55.0 17 0.00059 29.3 5.1 47 121-178 16-63 (99)
143 3p5t_L Cleavage and polyadenyl 54.7 9.6 0.00033 30.5 3.5 54 122-184 3-62 (90)
144 2nlw_A Eukaryotic translation 54.4 15 0.00052 30.2 4.8 56 121-178 16-73 (105)
145 1fje_B Nucleolin RBD12, protei 54.3 14 0.00048 32.4 4.8 55 120-185 99-154 (175)
146 2la4_A Nuclear and cytoplasmic 54.2 17 0.00057 29.5 4.9 47 121-178 28-75 (101)
147 2kvi_A Nuclear polyadenylated 54.2 15 0.00053 29.6 4.7 43 122-176 12-55 (96)
148 2bz2_A Negative elongation fac 54.1 19 0.00064 31.0 5.4 34 140-176 49-83 (121)
149 1wf1_A RNA-binding protein RAL 53.8 12 0.00042 30.9 4.1 51 121-184 28-79 (110)
150 2cjk_A Nuclear polyadenylated 53.8 19 0.00065 31.1 5.5 57 120-185 87-147 (167)
151 3pgw_A U1-A; protein-RNA compl 53.6 34 0.0012 32.6 7.7 49 121-179 208-257 (282)
152 3tyt_A Heterogeneous nuclear r 53.1 19 0.00065 33.7 5.7 64 122-194 125-192 (205)
153 3oja_A Leucine-rich immune mol 53.0 2.2E+02 0.0074 29.7 15.2 19 295-313 324-342 (487)
154 2dis_A Unnamed protein product 52.9 18 0.00061 29.6 4.9 47 122-176 10-62 (109)
155 2kn4_A Immunoglobulin G-bindin 52.6 15 0.0005 32.3 4.6 56 120-184 70-129 (158)
156 4f02_A Polyadenylate-binding p 52.4 11 0.00039 34.8 4.0 49 122-178 105-155 (213)
157 2jvo_A Nucleolar protein 3; nu 52.3 16 0.00055 30.5 4.6 44 120-176 31-75 (108)
158 2f3j_A RNA and export factor b 52.0 17 0.00058 33.4 5.1 49 121-177 89-140 (177)
159 3md3_A Nuclear and cytoplasmic 52.0 18 0.00062 30.9 5.1 48 121-176 88-139 (166)
160 3s8s_A Histone-lysine N-methyl 51.9 18 0.00063 30.5 4.9 49 121-177 7-59 (110)
161 2yh0_A Splicing factor U2AF 65 51.4 18 0.00062 32.2 5.1 51 120-178 114-168 (198)
162 2e44_A Insulin-like growth fac 51.3 21 0.00072 28.4 5.0 49 120-177 15-65 (96)
163 3tnu_A Keratin, type I cytoske 51.3 1.3E+02 0.0044 26.5 12.1 42 266-307 5-46 (131)
164 1l3k_A Heterogeneous nuclear r 51.2 19 0.00066 32.0 5.2 48 121-176 105-156 (196)
165 2kxn_B Transformer-2 protein h 51.1 17 0.00059 31.5 4.8 56 121-185 47-106 (129)
166 2hzc_A Splicing factor U2AF 65 50.9 15 0.00053 28.5 4.1 49 120-177 6-64 (87)
167 2cpz_A CUG triplet repeat RNA- 50.8 16 0.00055 30.3 4.4 48 121-176 26-77 (115)
168 3n9u_C Cleavage and polyadenyl 50.1 15 0.00051 33.1 4.3 56 121-185 56-117 (156)
169 2dq0_A Seryl-tRNA synthetase; 49.3 96 0.0033 33.1 11.1 55 433-505 69-131 (455)
170 2cpx_A Hypothetical protein FL 49.2 12 0.0004 31.1 3.3 46 121-176 26-77 (115)
171 3nmd_A CGMP dependent protein 49.1 42 0.0014 27.5 6.3 26 398-426 40-65 (72)
172 2lw1_A ABC transporter ATP-bin 49.1 62 0.0021 26.8 7.7 63 390-462 21-85 (89)
173 1b7f_A Protein (SXL-lethal pro 49.0 17 0.00057 31.4 4.4 55 122-185 5-63 (168)
174 3brv_B NF-kappa-B essential mo 48.9 84 0.0029 25.6 7.9 48 308-355 6-53 (70)
175 2m2b_A RNA-binding protein 10; 48.6 12 0.0004 32.3 3.2 58 122-188 25-88 (131)
176 2dgx_A KIAA0430 protein; RRM d 48.4 22 0.00076 28.7 4.8 47 122-177 11-63 (96)
177 2lea_A Serine/arginine-rich sp 48.3 16 0.00053 32.0 4.0 49 120-176 47-99 (135)
178 2voo_A Lupus LA protein; RNA-b 47.9 18 0.00062 33.6 4.7 49 121-177 110-161 (193)
179 2e5g_A U6 snRNA-specific termi 47.8 35 0.0012 27.2 5.8 53 122-185 10-63 (94)
180 4dnd_A Syntaxin-10, SYN10; str 47.7 77 0.0026 28.3 8.6 72 414-489 37-118 (130)
181 3hnw_A Uncharacterized protein 47.6 1.6E+02 0.0054 26.5 13.7 22 387-408 113-134 (138)
182 3u59_A Tropomyosin beta chain; 47.5 1.3E+02 0.0044 25.4 10.4 73 390-466 15-91 (101)
183 2g4b_A Splicing factor U2AF 65 47.3 31 0.0011 29.9 5.9 51 120-178 94-148 (172)
184 3o0z_A RHO-associated protein 46.7 1.9E+02 0.0065 27.2 18.1 17 392-408 119-135 (168)
185 3v4m_A Splicing factor U2AF 65 46.7 12 0.00039 31.7 2.8 58 122-179 7-72 (105)
186 2dgt_A RNA-binding protein 30; 46.6 28 0.00097 27.6 5.1 43 121-176 11-54 (92)
187 1wex_A Hypothetical protein (r 46.5 30 0.001 29.0 5.4 52 121-184 16-68 (104)
188 3egn_A RNA-binding protein 40; 46.2 19 0.00067 31.1 4.3 55 122-185 47-110 (143)
189 3l4q_C Phosphatidylinositol 3- 46.2 1.9E+02 0.0066 27.1 14.6 14 308-321 56-69 (170)
190 1b7f_A Protein (SXL-lethal pro 46.0 25 0.00086 30.2 5.0 49 120-176 89-141 (168)
191 2cq1_A PTB-like protein L; RRM 46.0 32 0.0011 28.8 5.5 45 121-176 16-61 (101)
192 2e7s_A RAB guanine nucleotide 45.6 1.3E+02 0.0044 27.4 9.6 43 385-430 90-132 (135)
193 1l3k_A Heterogeneous nuclear r 45.2 23 0.00079 31.4 4.8 56 121-185 14-73 (196)
194 1fxl_A Paraneoplastic encephal 44.9 24 0.00082 30.2 4.7 47 122-176 4-54 (167)
195 2dnp_A RNA-binding protein 14; 44.5 23 0.00079 28.0 4.2 44 121-177 10-54 (90)
196 1u6f_A Tcubp1, RNA-binding pro 43.6 17 0.00058 31.2 3.5 55 122-185 44-102 (139)
197 3u1c_A Tropomyosin alpha-1 cha 43.5 1.5E+02 0.0052 25.1 10.4 72 391-466 16-91 (101)
198 3s6e_A RNA-binding protein 39; 43.5 17 0.00059 31.3 3.5 55 122-177 9-66 (114)
199 2cjk_A Nuclear polyadenylated 43.4 28 0.00096 30.0 4.9 48 122-177 5-56 (167)
200 2m0f_A Zinc finger and BTB dom 43.2 11 0.00037 22.4 1.6 22 38-62 1-22 (29)
201 2eqb_B RAB guanine nucleotide 43.1 1.6E+02 0.0055 25.3 11.6 27 385-411 70-96 (97)
202 3pgw_S U1-70K; protein-RNA com 42.5 66 0.0023 33.9 8.5 55 121-184 103-161 (437)
203 1m1j_C Fibrinogen gamma chain; 42.4 1.4E+02 0.0047 31.7 10.8 75 227-307 25-113 (409)
204 3smz_A Protein raver-1, ribonu 42.2 32 0.0011 32.8 5.6 51 120-177 184-237 (284)
205 2dgu_A Heterogeneous nuclear r 42.1 23 0.0008 28.8 4.0 43 122-177 13-56 (103)
206 2ghp_A U4/U6 snRNA-associated 42.0 36 0.0012 32.6 5.9 51 119-176 209-264 (292)
207 1fxl_A Paraneoplastic encephal 40.8 40 0.0014 28.7 5.5 48 121-176 89-140 (167)
208 2cqh_A IGF-II mRNA-binding pro 40.8 17 0.00057 29.0 2.8 44 122-177 10-55 (93)
209 1sjq_A Polypyrimidine tract-bi 40.4 29 0.00098 29.8 4.4 45 120-176 16-62 (105)
210 1p7a_A BF3, BKLF, kruppel-like 40.3 14 0.00048 23.7 1.9 25 36-63 8-32 (37)
211 3lss_A Seryl-tRNA synthetase; 39.6 1.6E+02 0.0054 31.9 10.9 50 439-506 109-168 (484)
212 1wg1_A KIAA1579 protein, homol 39.6 25 0.00084 27.9 3.6 51 122-185 7-58 (88)
213 2d9o_A DNAJ (HSP40) homolog, s 38.3 58 0.002 27.3 5.9 37 139-177 28-65 (100)
214 2qfj_A FBP-interacting repress 37.8 44 0.0015 30.0 5.5 47 121-175 126-176 (216)
215 2pe8_A Splicing factor 45; RRM 37.8 51 0.0017 27.6 5.5 84 122-223 10-98 (105)
216 2xdj_A Uncharacterized protein 37.6 1E+02 0.0035 25.6 7.2 44 400-457 22-65 (83)
217 2k48_A Nucleoprotein; viral pr 37.1 2.1E+02 0.0072 25.0 9.2 58 342-412 46-103 (107)
218 3mq7_A Bone marrow stromal ant 37.1 1.5E+02 0.0051 26.4 8.4 29 439-467 77-105 (121)
219 2kvh_A Zinc finger and BTB dom 37.0 17 0.00058 21.5 1.8 22 38-62 2-23 (27)
220 3r27_A HnRNP L, heterogeneous 36.5 53 0.0018 27.9 5.4 45 122-177 23-68 (100)
221 1cii_A Colicin IA; bacteriocin 36.3 2.6E+02 0.009 30.4 11.6 90 316-430 348-437 (602)
222 3a7p_A Autophagy protein 16; c 35.8 2.7E+02 0.0092 25.8 10.8 63 384-467 68-130 (152)
223 2qfj_A FBP-interacting repress 35.8 54 0.0019 29.4 5.8 57 120-185 28-88 (216)
224 1fj7_A Nucleolin RBD1, protein 35.5 9.1 0.00031 31.0 0.4 58 120-186 17-77 (101)
225 2els_A Zinc finger protein 406 35.2 19 0.00064 22.9 1.9 24 37-63 7-30 (36)
226 2ad9_A Polypyrimidine tract-bi 34.9 43 0.0015 29.2 4.7 45 121-177 32-78 (119)
227 2p22_C Protein SRN2; endosome, 34.5 3E+02 0.01 26.1 10.8 72 265-342 77-149 (192)
228 2elr_A Zinc finger protein 406 34.2 20 0.00068 22.6 1.9 24 36-62 6-29 (36)
229 2a3j_A U1 small nuclear ribonu 33.9 45 0.0015 29.1 4.7 47 122-176 31-82 (127)
230 1m1j_B Fibrinogen beta chain; 33.8 2.3E+02 0.0079 30.5 11.0 101 229-337 89-198 (464)
231 3na7_A HP0958; flagellar bioge 33.6 3.3E+02 0.011 26.2 23.3 9 475-483 179-187 (256)
232 2elt_A Zinc finger protein 406 33.6 20 0.00067 22.7 1.8 23 37-62 7-29 (36)
233 2m0d_A Zinc finger and BTB dom 33.2 21 0.00073 21.0 1.8 23 38-63 2-24 (30)
234 2elp_A Zinc finger protein 406 33.1 22 0.00075 22.7 2.0 24 36-62 6-30 (37)
235 3lay_A Zinc resistance-associa 32.8 2.3E+02 0.0079 26.5 9.6 29 332-360 114-142 (175)
236 3nmd_A CGMP dependent protein 32.6 1.1E+02 0.0038 25.1 6.3 45 442-486 21-65 (72)
237 1wrd_A TOM1, target of MYB pro 32.2 1.3E+02 0.0045 25.7 7.2 20 411-430 9-28 (103)
238 1ard_A Yeast transcription fac 31.6 23 0.0008 20.8 1.8 21 39-62 2-22 (29)
239 3pgw_A U1-A; protein-RNA compl 31.5 56 0.0019 31.0 5.3 54 122-184 11-69 (282)
240 3hhm_B NISH2 P85alpha; PI3KCA, 31.5 4.6E+02 0.016 27.2 15.9 27 258-284 131-157 (373)
241 1wii_A Hypothetical UPF0222 pr 31.3 13 0.00044 31.4 0.6 13 36-48 20-32 (85)
242 3hnw_A Uncharacterized protein 31.2 2.7E+02 0.0093 25.0 9.5 10 325-334 36-45 (138)
243 1rik_A E6APC1 peptide; E6-bind 31.1 22 0.00076 21.0 1.6 21 39-62 2-22 (29)
244 2elx_A Zinc finger protein 406 30.8 24 0.00082 22.0 1.8 24 37-63 5-28 (35)
245 3q2s_C Cleavage and polyadenyl 30.6 48 0.0016 31.6 4.7 56 121-185 69-130 (229)
246 3viq_B Mating-type switching p 30.1 58 0.002 27.5 4.4 47 392-446 2-48 (85)
247 2kvf_A Zinc finger and BTB dom 30.1 25 0.00086 20.7 1.7 23 38-63 2-24 (28)
248 4dci_A Uncharacterized protein 30.1 1.4E+02 0.0048 27.5 7.5 96 320-430 28-123 (150)
249 2lcw_A RNA-binding protein FUS 36.2 11 0.00037 31.5 0.0 55 122-185 9-75 (116)
250 1klr_A Zinc finger Y-chromosom 30.0 25 0.00085 20.7 1.7 22 39-63 2-23 (30)
251 1qm9_A Polypyrimidine tract-bi 30.0 50 0.0017 29.6 4.4 46 121-176 121-168 (198)
252 1m1j_A Fibrinogen alpha subuni 29.9 3.9E+02 0.013 28.9 11.7 110 217-331 38-160 (491)
253 1jmt_A Splicing factor U2AF 35 29.7 37 0.0013 28.3 3.3 31 149-179 49-81 (104)
254 3mq9_A Bone marrow stromal ant 29.6 2.3E+02 0.0079 29.3 10.1 90 376-466 376-469 (471)
255 1qm9_A Polypyrimidine tract-bi 29.5 48 0.0016 29.6 4.3 53 122-185 5-59 (198)
256 2m0e_A Zinc finger and BTB dom 29.4 24 0.00083 20.6 1.6 21 39-62 2-22 (29)
257 1d0q_A DNA primase; zinc-bindi 29.1 60 0.0021 27.4 4.5 11 55-65 70-80 (103)
258 1srk_A Zinc finger protein ZFP 28.9 27 0.00093 21.9 1.8 24 37-63 5-28 (35)
259 1paa_A Yeast transcription fac 28.8 27 0.00092 20.8 1.7 20 39-61 2-21 (30)
260 2adc_A Polypyrimidine tract-bi 28.8 52 0.0018 30.6 4.5 51 122-184 36-89 (229)
261 2elq_A Zinc finger protein 406 28.6 26 0.0009 22.2 1.7 24 37-63 7-30 (36)
262 3pq1_A Poly(A) RNA polymerase; 28.3 41 0.0014 36.2 4.1 36 140-177 64-100 (464)
263 2dq3_A Seryl-tRNA synthetase; 28.1 1.2E+02 0.0042 31.8 7.7 56 433-506 68-131 (425)
264 2go8_A Hypothetical protein YQ 28.0 42 0.0014 29.7 3.4 99 120-222 11-116 (122)
265 1x4d_A Matrin 3; structural ge 28.0 66 0.0022 27.1 4.5 46 120-177 15-63 (102)
266 1sjr_A Polypyrimidine tract-bi 27.3 53 0.0018 30.5 4.1 48 123-179 49-97 (164)
267 2kvg_A Zinc finger and BTB dom 27.3 21 0.00073 21.3 1.0 22 38-62 2-23 (27)
268 1x4f_A Matrin 3; structural ge 27.1 76 0.0026 27.3 4.9 49 120-178 25-74 (112)
269 2ke4_A CDC42-interacting prote 27.0 2.9E+02 0.01 23.5 9.5 43 391-433 15-57 (98)
270 2ic9_A Nucleocapsid protein; h 26.9 3E+02 0.01 23.7 8.3 63 337-412 11-73 (96)
271 3smz_A Protein raver-1, ribonu 26.8 59 0.002 30.9 4.6 50 122-184 24-74 (284)
272 2elv_A Zinc finger protein 406 26.7 32 0.0011 21.8 1.9 24 37-63 7-30 (36)
273 4b6x_A AVRRPS4, avirulence pro 26.5 53 0.0018 27.6 3.5 17 459-482 34-50 (90)
274 1o3x_A ADP-ribosylation factor 26.4 1.6E+02 0.0055 26.6 7.1 62 414-480 50-125 (140)
275 2zuo_A MVP, major vault protei 26.1 8.2E+02 0.028 28.4 16.3 21 409-429 764-784 (861)
276 1x5p_A Negative elongation fac 26.0 94 0.0032 24.7 5.1 34 140-176 25-59 (97)
277 2adc_A Polypyrimidine tract-bi 25.9 84 0.0029 29.2 5.4 46 121-176 152-199 (229)
278 2v66_B Nuclear distribution pr 25.5 3.4E+02 0.012 23.8 13.9 26 392-417 85-110 (111)
279 2kw0_A CCMH protein; oxidoredu 25.5 18 0.00061 30.9 0.5 13 38-50 22-34 (90)
280 2yrc_A Protein transport prote 25.5 29 0.001 27.1 1.7 15 33-47 26-41 (59)
281 2hl7_A Cytochrome C-type bioge 25.2 19 0.00065 30.3 0.6 13 38-50 25-37 (84)
282 1uii_A Geminin; human, DNA rep 25.2 2E+02 0.0067 24.2 6.7 48 380-430 27-82 (83)
283 1znf_A 31ST zinc finger from X 24.7 35 0.0012 19.7 1.7 22 39-63 1-22 (27)
284 2elo_A Zinc finger protein 406 24.7 27 0.00092 22.2 1.2 25 36-63 6-30 (37)
285 4f02_A Polyadenylate-binding p 24.7 85 0.0029 28.8 5.1 48 122-177 17-68 (213)
286 2en2_A B-cell lymphoma 6 prote 24.6 34 0.0012 22.4 1.8 24 36-62 8-31 (42)
287 1t6f_A Geminin; coiled-coil, c 24.5 1.2E+02 0.0041 21.8 4.5 21 314-334 4-24 (37)
288 2oeq_A Protein of unknown func 24.4 2.3E+02 0.0078 24.4 7.5 65 420-492 51-115 (122)
289 1wle_A Seryl-tRNA synthetase; 24.3 1.8E+02 0.006 31.6 8.1 53 436-506 119-178 (501)
290 2ept_A Zinc finger protein 32; 24.0 38 0.0013 22.2 1.9 25 36-63 7-31 (41)
291 4emc_A Monopolin complex subun 23.9 2.1E+02 0.0072 27.4 7.6 35 237-271 4-38 (190)
292 2wvr_A Geminin; DNA replicatio 23.6 1.5E+02 0.005 28.8 6.5 36 392-430 116-151 (209)
293 2emi_A Zinc finger protein 484 23.1 39 0.0013 22.7 1.9 25 36-63 9-33 (46)
294 3opc_A Uncharacterized protein 23.1 3.9E+02 0.013 23.5 12.3 34 441-474 89-122 (154)
295 2e5i_A Heterogeneous nuclear r 22.9 98 0.0033 27.0 4.9 44 124-178 29-74 (124)
296 2eos_A B-cell lymphoma 6 prote 22.9 41 0.0014 22.1 1.9 25 36-63 8-32 (42)
297 2yu5_A Zinc finger protein 473 22.8 41 0.0014 22.4 1.9 25 36-63 9-33 (44)
298 2ytb_A Zinc finger protein 32; 22.8 40 0.0014 22.0 1.9 25 36-63 8-32 (42)
299 2eq1_A Zinc finger protein 347 22.7 40 0.0014 22.6 1.9 25 36-63 9-33 (46)
300 2enf_A Zinc finger protein 347 22.6 42 0.0014 22.6 1.9 25 36-63 9-33 (46)
301 3ue2_A Poly(U)-binding-splicin 22.6 68 0.0023 27.6 3.7 84 122-224 22-114 (118)
302 2zqm_A Prefoldin beta subunit 22.6 3.4E+02 0.011 22.6 8.9 43 390-432 19-61 (117)
303 2j8a_A Histone-lysine N-methyl 22.5 1.6E+02 0.0054 26.8 6.2 37 139-175 17-57 (136)
304 6rxn_A Rubredoxin; electron tr 22.4 25 0.00086 26.3 0.7 12 38-49 29-40 (46)
305 2yts_A Zinc finger protein 484 22.3 40 0.0014 22.6 1.8 25 36-63 9-33 (46)
306 2el5_A Zinc finger protein 268 22.3 41 0.0014 22.0 1.8 25 36-63 7-31 (42)
307 3a7o_A Autophagy protein 16; c 22.3 1.9E+02 0.0065 23.7 5.9 26 436-461 14-39 (75)
308 1njq_A Superman protein; zinc- 22.3 39 0.0013 21.9 1.7 24 37-63 4-27 (39)
309 2eof_A Zinc finger protein 268 22.2 41 0.0014 22.2 1.8 25 36-63 9-33 (44)
310 2elm_A Zinc finger protein 406 22.1 41 0.0014 21.7 1.7 22 37-61 7-28 (37)
311 1e8j_A Rubredoxin; iron-sulfur 22.1 30 0.001 26.4 1.1 14 37-50 34-47 (52)
312 2ic6_A Nucleocapsid protein; h 22.0 3.4E+02 0.012 22.5 8.7 61 339-412 13-73 (78)
313 1wlq_A Geminin; coiled-coil; 2 22.0 3.1E+02 0.01 23.0 7.3 34 311-344 32-65 (83)
314 2en9_A Zinc finger protein 28 21.8 45 0.0015 22.5 2.0 24 36-62 9-32 (46)
315 2eou_A Zinc finger protein 473 21.8 44 0.0015 22.3 1.9 24 36-62 9-32 (44)
316 2eqb_B RAB guanine nucleotide 21.7 3.8E+02 0.013 23.0 13.5 47 282-328 48-94 (97)
317 3zzy_A Polypyrimidine tract-bi 21.7 95 0.0033 27.5 4.6 45 123-177 31-77 (130)
318 2emb_A Zinc finger protein 473 21.7 41 0.0014 22.4 1.7 25 36-63 9-33 (44)
319 2ep3_A Zinc finger protein 484 21.7 42 0.0014 22.5 1.8 25 36-63 9-33 (46)
320 2zxx_A Geminin; coiled-coil, c 21.7 2.1E+02 0.0072 23.8 6.2 44 387-430 23-70 (79)
321 2eow_A Zinc finger protein 347 21.6 43 0.0015 22.4 1.8 24 36-62 9-32 (46)
322 3sde_A Paraspeckle component 1 21.6 91 0.0031 29.6 4.8 53 121-185 23-76 (261)
323 3uk3_C Zinc finger protein 217 21.6 39 0.0013 23.6 1.7 23 37-62 2-24 (57)
324 2e72_A POGO transposable eleme 21.3 42 0.0014 25.6 1.8 22 36-61 9-31 (49)
325 2ytf_A Zinc finger protein 268 21.2 44 0.0015 22.4 1.8 25 36-63 9-33 (46)
326 3viq_A SWI5-dependent recombin 21.1 2.6E+02 0.0089 24.8 7.2 19 411-429 10-28 (122)
327 3mjh_B Early endosome antigen 21.1 41 0.0014 23.7 1.6 20 39-61 5-24 (34)
328 2en7_A Zinc finger protein 268 21.1 43 0.0015 22.1 1.7 25 36-63 9-33 (44)
329 2eon_A ZFP-95, zinc finger pro 21.1 47 0.0016 22.4 1.9 25 36-63 9-33 (46)
330 2cq2_A Hypothetical protein LO 21.0 95 0.0033 26.9 4.3 37 139-178 38-75 (114)
331 2z5i_I TM, tropomyosin alpha-1 20.9 94 0.0032 22.7 3.5 25 389-413 15-39 (40)
332 2enh_A Zinc finger protein 28 20.8 48 0.0017 22.3 2.0 25 36-63 9-33 (46)
333 2epv_A Zinc finger protein 268 20.7 46 0.0016 22.3 1.8 25 36-63 9-33 (44)
334 1yk4_A Rubredoxin, RD; electro 20.6 28 0.00097 26.5 0.7 14 37-50 33-46 (52)
335 2epc_A Zinc finger protein 32; 20.6 45 0.0016 21.7 1.7 25 36-63 8-32 (42)
336 2eom_A ZFP-95, zinc finger pro 20.5 47 0.0016 22.4 1.8 24 36-62 9-32 (46)
337 2ytj_A Zinc finger protein 484 20.4 47 0.0016 22.3 1.8 25 36-63 9-33 (46)
338 1x6e_A Zinc finger protein 24; 20.3 42 0.0014 25.0 1.7 24 36-62 11-34 (72)
339 2yrj_A Zinc finger protein 473 20.3 49 0.0017 22.1 1.9 25 36-63 9-33 (46)
340 2v3b_B Rubredoxin 2, rubredoxi 20.3 28 0.00097 26.8 0.7 14 38-51 35-48 (55)
341 2epw_A Zinc finger protein 268 20.3 50 0.0017 22.1 2.0 25 36-63 9-33 (46)
342 2i1j_A Moesin; FERM, coiled-co 20.3 1.3E+02 0.0043 33.1 6.1 37 324-360 366-402 (575)
343 2ytp_A Zinc finger protein 484 20.3 49 0.0017 22.3 1.9 25 36-63 9-33 (46)
344 2em3_A Zinc finger protein 28 20.3 47 0.0016 22.3 1.8 24 36-62 9-32 (46)
345 2yte_A Zinc finger protein 473 20.2 51 0.0017 21.5 1.9 25 36-63 7-31 (42)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-65 Score=486.06 Aligned_cols=167 Identities=35% Similarity=0.698 Sum_probs=158.5
Q ss_pred CCCCCceeeecceEEEEeccc-cccCCccccCChhhHhh-h--cccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 110 NPEQEDLYVWPWMGIIVNIVM-ETKDRGSFLDSGYWLKR-F--AVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 110 ~~~~de~iVWPwmgIi~Ni~~-e~~dg~~~G~s~~~L~~-~--~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.++++++|||||||||+|||| +.+||+++|+|+++|++ | ++|+|++|+||||++||+|+|||+|++||+||+||++
T Consensus 2 ~~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 2 DCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp ----CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 368899999999999999999 56799999999999999 8 8999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCchhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhh
Q 008696 186 FEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMK 265 (557)
Q Consensus 186 fek~Fe~~~~GRkdW~~~~~~~~~~LYGW~AradD~~~~~~iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~k 265 (557)
||+||+.+||||+||.+++++ +++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++|
T Consensus 82 fek~Fe~~~~GK~dW~~~~~~-~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~k 160 (172)
T 4e8u_A 82 FDKAYTVDGHGKKDWLKKDGP-KLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEK 160 (172)
T ss_dssp HHHHHHHTTCSHHHHTCSSSC-CCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHhhCCCC-CCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987666 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhh
Q 008696 266 NEDLSELQCKFN 277 (557)
Q Consensus 266 n~~l~elE~k~~ 277 (557)
|+||++||++||
T Consensus 161 n~~l~ele~k~~ 172 (172)
T 4e8u_A 161 KKDMKEIEELCS 172 (172)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhC
Confidence 999999999997
No 2
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.48 E-value=1.9 Score=41.42 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=76.0
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh-
Q 008696 254 VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKK- 332 (557)
Q Consensus 254 lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~e- 332 (557)
-|+|.+.........+.+|+.-|++-..|=+.+-.|-+.-+.+...-.+.++... .+.-.+.+.++..++....+
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~----~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN----QRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888876666555555544444444343333322 22222233333333332222
Q ss_pred ---hHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 008696 333 ---LDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDA 409 (557)
Q Consensus 333 ---L~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~ 409 (557)
+..-.++|..+...++.-+.++ .+-...|..|.- +.-.+-.-+++-..--..++.++.-||-+|+.
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~i----reLEq~NDdlEr-------~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYV----RELEQANDDLER-------AKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222222222222111 111112222211 12222333444444556678888889999999
Q ss_pred HhhhhhhHHHhhhhHH
Q 008696 410 KQKLEMEIEDLKGKLE 425 (557)
Q Consensus 410 kQ~LELEi~qLkg~L~ 425 (557)
|+.|..++|+|+.-+.
T Consensus 156 Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 156 KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999986554
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.26 E-value=0.052 Score=64.44 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=4.4
Q ss_pred hhhhHHHHH
Q 008696 19 YLEKPYEEL 27 (557)
Q Consensus 19 y~~k~y~~L 27 (557)
|-.+.|..+
T Consensus 554 ~~~kl~~~~ 562 (1184)
T 1i84_S 554 FVEKLIQEQ 562 (1184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444555444
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.05 E-value=0.083 Score=62.74 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=6.8
Q ss_pred ceEEEEeCCChhchhh
Q 008696 167 AQAVVKFNNDWNGFMQ 182 (557)
Q Consensus 167 G~aIv~F~~dw~Gf~~ 182 (557)
|-+-|-|....-...+
T Consensus 769 G~TKVF~r~g~l~~LE 784 (1184)
T 1i84_S 769 GQSKIFFRTGVLAHLE 784 (1184)
T ss_dssp CSSEEEECTTHHHHHH
T ss_pred cCeEEEEechHHHHHH
Confidence 3344445444333333
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.48 E-value=4.7 Score=35.97 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhcc
Q 008696 395 EALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSN 474 (557)
Q Consensus 395 ~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sn 474 (557)
.+...+..|..||.+.+.+=.+++.....|.--| .+|...|.+..+.+++.++.|..|...-|+.-
T Consensus 45 ~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k--------------~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 45 SLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK--------------IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666566666555554222 35667777777888888889999998888888
Q ss_pred HHHHHHHHHH
Q 008696 475 DELQEARREL 484 (557)
Q Consensus 475 dELqeARkel 484 (557)
+++++-++.|
T Consensus 111 ~e~~~Lk~~l 120 (129)
T 2fxo_A 111 DECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.32 E-value=3.4 Score=48.86 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHhhhHHHH
Q 008696 439 QKKMKEMNDELESKIDDLDEME 460 (557)
Q Consensus 439 ~~k~~~l~~~L~ek~~el~~~e 460 (557)
..++..|+++....+..+++++
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444433
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.28 E-value=2.7 Score=45.16 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 008696 391 REKEEALSKILQLEKQ 406 (557)
Q Consensus 391 rEke~~~~ki~~Lekq 406 (557)
+|...+-.+|.+|++.
T Consensus 565 ~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 565 QETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444433
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.28 E-value=2 Score=46.24 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 008696 306 RLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQ 359 (557)
Q Consensus 306 ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~ 359 (557)
+......+....+.+.++.+.+.++.+++.=.++.++++...+..++++.+-++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 333334444444444444455545444444444444444444444444443333
No 9
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.40 E-value=0.49 Score=39.77 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=45.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~f 186 (557)
+.++.|-|+|... +...|++ |+.|.++.|+.++++.| ++|+|.|+|.+.- .-..|+.+
T Consensus 15 ~~~l~V~nLp~~~--------te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~~ 74 (102)
T 1wez_A 15 GHCVHMRGLPYRA--------TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHE-DAVAAMAK 74 (102)
T ss_dssp SCEEEEESCCTTC--------CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSH-HHHHHHTT
T ss_pred CCEEEEeCCCCCC--------CHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 4677889998633 6788999 99999999999998866 5799999998643 44555544
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.64 E-value=3.5 Score=45.13 Aligned_cols=92 Identities=10% Similarity=0.080 Sum_probs=65.5
Q ss_pred HHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KDRLHYAFVEETRKMQRLARDNVRRILE 317 (557)
Q Consensus 241 ~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE---k~~l~~~yneE~~kmQ~~a~~~~~ri~~ 317 (557)
..++.+..+...+.|+.|+++++.-++.-+..+.-|+.+...|+.-+.. ++....+|.+|++..++.-.+.++..|.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888999999999988888888888888888877665543 5555666777887777766666666655
Q ss_pred HHHHhhHHHHHHHhh
Q 008696 318 EQEKLSCELETKKKK 332 (557)
Q Consensus 318 e~ekl~~eLe~k~~e 332 (557)
--..|+.-|+++..+
T Consensus 132 nIrvLQsnLedq~~k 146 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554433
No 11
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.80 E-value=1 Score=37.06 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=37.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
-++.|-|+|.. .+...|++ |+.|.++ .|....+..++.|+|.|.|.+.
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPFR--------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 45668899763 36778999 9999875 6666677778999999999874
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.28 E-value=9.1 Score=45.32 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhHHH
Q 008696 323 SCELETKKKKLDSW 336 (557)
Q Consensus 323 ~~eLe~k~~eL~~r 336 (557)
..+|+++..+|..|
T Consensus 923 ~~~LE~kl~eLq~r 936 (1080)
T 2dfs_A 923 HIGLENKIMQLQRK 936 (1080)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.17 E-value=67 Score=42.49 Aligned_cols=24 Identities=29% Similarity=0.471 Sum_probs=15.7
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHH
Q 008696 320 EKLSCELETKKKKLDSWSKQLNKR 343 (557)
Q Consensus 320 ekl~~eLe~k~~eL~~r~k~L~k~ 343 (557)
..|+.+|..+..+|+.+.++-++.
T Consensus 1937 ~~l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A 1937 KDLQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766655543
No 14
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.72 E-value=0.78 Score=39.44 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=45.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHhh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEKA 189 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~fek~ 189 (557)
..+.|-|+|... +...|++ |+.|.+..|+.++++.| .+|++.|.|.+. .....|+.++.+
T Consensus 17 ~~v~V~nLp~~~--------te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~~~ 78 (109)
T 2dnn_A 17 LYVSVHGMPFSA--------MENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSP-QDTFEALKRNRM 78 (109)
T ss_dssp HEEEEECCCSSC--------CHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSH-HHHHHHHHTTTE
T ss_pred CEEEEeCCCCCC--------CHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcCCC
Confidence 578899998633 6678999 99998888998888776 589999999874 344556555433
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.38 E-value=99 Score=40.97 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHH-HHh--hccHHHHHHHHHH
Q 008696 437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIA-KER--QSNDELQEARREL 484 (557)
Q Consensus 437 ~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~-ker--~sndELqeARkel 484 (557)
+...+.+.|+.+++.....|+.-+.|-..|-- |+| .+-.+|+...+.|
T Consensus 2053 ~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2053 TLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 33445566666666666677666667666653 333 2334455544443
No 16
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.70 E-value=1.2 Score=35.67 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=42.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~f 186 (557)
+.++.|-|+|.. .+...|++ |+.|.+..|+..++..| ++|+|.|.|.+ ...-..|+.+
T Consensus 10 ~~~l~v~nLp~~--------~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~ 69 (91)
T 2dgw_A 10 CHTVKLRGAPFN--------VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALKC 69 (91)
T ss_dssp CCEEEEECCCSS--------CCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHHS
T ss_pred ccEEEEECCCCC--------CCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHHh
Confidence 456778899763 36678899 99997778888887555 58999999975 4445556553
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.49 E-value=21 Score=31.64 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=53.1
Q ss_pred HhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHH
Q 008696 259 ASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSK 338 (557)
Q Consensus 259 ~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k 338 (557)
...|..-...+...+....+.......++.++-.|...-..|-.. ...+..++..-.+.+.+|+.+.++|..|-.
T Consensus 19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~-----l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN-----LADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444555555555444333333221 122333444445567788888888888888
Q ss_pred HHHHHHhhhHHHHHhhHHHHH
Q 008696 339 QLNKREALTERERQKLDADRQ 359 (557)
Q Consensus 339 ~L~k~~~~~~~er~kL~~e~~ 359 (557)
+.....+.-...+++|+.+..
T Consensus 94 eeee~~~~L~~~kkkle~e~~ 114 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECS 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777777776654
No 18
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=84.44 E-value=1.2 Score=39.55 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=41.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc--eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV--EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~--kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.++.|-|+|... +...|++ |+.|.+. .|+.++++.| .+|++.|.|.+.-. ...|+.
T Consensus 43 ~~lfVgnLp~~~--------te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~-A~~Al~ 102 (126)
T 2hgm_A 43 GFVRLRGLPFGC--------TKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQEL-AEKALG 102 (126)
T ss_dssp CEEEEECCCTTC--------CHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTH-HHHHHT
T ss_pred CEEEEeCCCCCC--------CHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHH-HHHHHH
Confidence 356788998643 6778999 9999766 7888888776 68999999987543 344544
No 19
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=84.27 E-value=1.3 Score=37.04 Aligned_cols=60 Identities=7% Similarity=0.072 Sum_probs=43.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCC----ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHHh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP----VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFEK 188 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p----~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~fek 188 (557)
+.++.|-|+|... +...|++ |+.|.+ ..|+.+++..| ++|+|.|.|.+ ...-..|+.++.
T Consensus 11 ~~~l~V~nLp~~~--------te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~~ 76 (107)
T 2lmi_A 11 VFLIRAQGLPWSC--------TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEKHR 76 (107)
T ss_dssp CCEEEEECCCSSC--------CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTTTT
T ss_pred ccEEEEeCCCCCC--------CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHhCc
Confidence 4557788998633 5677899 998876 67777777766 68999999975 555666766533
No 20
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.11 E-value=1.3 Score=37.59 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=41.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce--eeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE--VRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k--v~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~f 186 (557)
-++.|-|+|... +...|++ |+.|.++. |+.++++.| ++|+|.|.|.+ -..-..|+.+
T Consensus 16 ~~l~V~nLp~~~--------t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~ 76 (114)
T 2cpy_A 16 VCAHITNIPFSI--------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN-EDDARKSERL 76 (114)
T ss_dssp CEEEEESCCTTS--------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS-HHHHHHHGGG
T ss_pred cEEEEeCcCCcC--------CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh
Confidence 346688997633 5677899 99998765 888888766 68999999975 3444455443
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.44 E-value=11 Score=41.18 Aligned_cols=103 Identities=11% Similarity=0.174 Sum_probs=71.4
Q ss_pred hhhhhhhccCCC-CHHHHH------HHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHH
Q 008696 227 IGEYLRQEGKLR-TVSDIV------QEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVE 299 (557)
Q Consensus 227 iG~~Lrk~gdLK-Ti~ei~------~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yne 299 (557)
.|--++..-||+ .|.+|- +.......+.+..+.+++..+.....+++..|++++.-|++..+.-+.-.+.--.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444544 344443 2223456777788888888888888899999999999999998874433333337
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 008696 300 ETRKMQRLARDNVRRILEEQEKLSCELETKKKKL 333 (557)
Q Consensus 300 E~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL 333 (557)
-|+.+|..-++...+| ++|-..++.|++.-
T Consensus 132 nIrvLQsnLedq~~kI----QRLEvDIdiqirsC 161 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDM----KRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 7777777666665555 89999999998753
No 22
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.12 E-value=1.1 Score=39.39 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=42.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-----eeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-----EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-----kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~f 186 (557)
+..+.|-|+|... +...|++ |+.|.++ .|+.+++..| ++|++.|.|.+.- .-..|+..
T Consensus 23 ~~~v~V~nLp~~~--------te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al~~ 87 (123)
T 2dha_A 23 QVIVRMRGLPFTA--------TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNALRK 87 (123)
T ss_dssp CCEEEECSCCTTC--------CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHHTT
T ss_pred CCEEEEeCCCCCC--------CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 4567888998633 6778999 9999874 6888887766 5799999998744 34445543
No 23
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.63 E-value=2 Score=35.65 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=40.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
+.++.|-|+|.. .+...|++ |+.|.++....+.....+.|+|.|.|.+.-. -..|+
T Consensus 22 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~-A~~A~ 78 (109)
T 1x4a_A 22 DCRIYVGNLPPD--------IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRD-AEDAV 78 (109)
T ss_dssp SSEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHH-HHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHH-HHHHH
Confidence 346778899753 36778999 9999987766665555679999999976433 34444
No 24
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.58 E-value=1.7 Score=36.10 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=39.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce--eeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE--VRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k--v~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
..+.|-|+|... +...|++ |+.|.++. |+..++..| ++|+|.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~~--------te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~-~~a~~A~~ 75 (104)
T 1wg5_A 16 GFVRLRGLPFGC--------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ-EIAEKALK 75 (104)
T ss_dssp CEEEEESCCTTC--------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSH-HHHHHHHT
T ss_pred CEEEEeCCCCCC--------CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCH-HHHHHHHH
Confidence 567788998633 6678999 99999765 566666655 579999999763 33344443
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.52 E-value=38 Score=33.06 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 008696 380 ENVLRLVEEQKREKEEALSKILQLEKQLDAKQ 411 (557)
Q Consensus 380 e~vlkLve~hkrEke~~~~ki~~LekqL~~kQ 411 (557)
..+.+-++..+++...+...|+++..++++.+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777777777776666544
No 26
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.43 E-value=1.8 Score=37.11 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=43.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCC----ceeeeeccCCC-CcceEEEEeCCChhchhhHHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP----VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDFE 187 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p----~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~fe 187 (557)
+.++.|-|+|... +...|++ |+.|.+ ..|+.+++..| ++|+|.|.|.+ -..-..|+.++
T Consensus 17 ~~~l~V~nLp~~~--------te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~ 81 (118)
T 2db1_A 17 GYVVKLRGLPWSC--------SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKKD 81 (118)
T ss_dssp CCEEEEESCCTTC--------CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGGT
T ss_pred CcEEEEeCCCCCC--------CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhcC
Confidence 3567788997633 6678899 999987 67888887776 48999999975 45555666643
No 27
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.25 E-value=1.8 Score=35.50 Aligned_cols=57 Identities=12% Similarity=0.178 Sum_probs=40.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+-++.|-|+|.. .+...|++ |+.|.++. +....+..++.|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~-~a~~A~~ 73 (103)
T 2cqi_A 15 PRTLYVGNLSRD--------VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHR-DAAAALA 73 (103)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHH-HHHHHHH
T ss_pred CCEEEEeCCCcc--------CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHH-HHHHHHH
Confidence 345678899753 36778999 99998754 6666667778999999998543 3344443
No 28
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=81.83 E-value=2.3 Score=34.60 Aligned_cols=47 Identities=21% Similarity=0.066 Sum_probs=35.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~dw 177 (557)
|+++.|-|+|.. .+...|++ |+.|.++. ++... .+.|++.|.|.+.-
T Consensus 11 ~~~l~V~~Lp~~--------~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTED--------MTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHH
Confidence 678888999763 36788999 99998753 33333 47899999998754
No 29
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=81.11 E-value=0.99 Score=40.60 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=42.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~ 184 (557)
+.++.|-|+|... +...|++ |+.|.++.|+.++++.| ++|++.|+|.+. ..-..|+
T Consensus 46 ~~~lfV~nLp~~~--------te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~-e~A~~Al 103 (139)
T 2hgn_A 46 GHCVHMRGLPYKA--------TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATH-EEAVAAM 103 (139)
T ss_dssp CCCEECCSCCTTC--------CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHH-HHHHHHT
T ss_pred CCEEEEeCCCCCC--------CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCH-HHHHHHH
Confidence 3567788988633 6788999 99999999999998876 589999999753 3334444
No 30
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.60 E-value=2.4 Score=35.56 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=38.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChhc
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWNG 179 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh~G~aIv~F~~dw~G 179 (557)
-++.|-|++.. .+...|++ |+.|.++ .+....+..+..|+|.|.|.+.-.-
T Consensus 30 ~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A 82 (109)
T 2err_A 30 KRLHVSNIPFR--------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 82 (109)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHH
T ss_pred CEEEEECCCCc--------CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHH
Confidence 44667888753 46778899 9999865 5666667778899999999885543
No 31
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.43 E-value=1.9 Score=35.21 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=37.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
..+.|-|+|. ..+...|++ |+.|.++.+...++ .+.|+|.|.|.+.-.
T Consensus 20 ~~l~V~nL~~--------~~t~~~l~~~F~~~G~v~~~~~~~--~~~g~afV~f~~~~~ 68 (97)
T 2e5j_A 20 ADVYVGNLPR--------DARVSDLKRALRELGSVPLRLTWQ--GPRRRAFLHYPDSAA 68 (97)
T ss_dssp CEEEEECCCT--------TCCHHHHHHHHHHTTCCCSEEEEE--TTTTEEEEECSSHHH
T ss_pred CEEEEeCCCC--------cCcHHHHHHHHHhcCCEEEEEEcC--CCCcEEEEEECCHHH
Confidence 4677889975 336778999 99999987776664 578999999987543
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=79.38 E-value=3.2 Score=33.30 Aligned_cols=56 Identities=20% Similarity=0.126 Sum_probs=38.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.++.|-|+|.. .+...|++ |+.|.++ .+....++.| ++|+|.|.|.+.-.- ..|+.
T Consensus 17 ~~l~v~nlp~~--------~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a-~~A~~ 75 (95)
T 2ywk_A 17 RTVFVGNLEAR--------VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV-SYAIA 75 (95)
T ss_dssp GEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHH-HHHHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHH-HHHHH
Confidence 56778899763 36678999 9999875 4555555555 479999999876543 33443
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=78.86 E-value=1.9 Score=36.58 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=39.3
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChhchhhHH
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
+.|-|+|.. .+...|++ |+.|.++ .|+...+..++.|++.|.|.+.-. -..|+
T Consensus 8 lfV~nLp~~--------~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~-A~~Ai 62 (115)
T 4f25_A 8 IFIKNLDKS--------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA-AERAI 62 (115)
T ss_dssp EEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHH-HHHHH
T ss_pred EEECCCCCC--------CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHH-HHHHH
Confidence 567888753 36678999 9999875 567777777889999999987443 34444
No 34
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=78.45 E-value=3.2 Score=34.72 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=36.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
-++.|-|+|. ..+...|++ |+.|.++....+.......|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~ 58 (115)
T 3lqv_A 9 RILYIRNLPY--------KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 58 (115)
T ss_dssp SEEEEESCCT--------TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHH
Confidence 3567889875 336778999 999998766555544556899999998643
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.41 E-value=49 Score=31.72 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=69.8
Q ss_pred HHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHH
Q 008696 315 ILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKE 394 (557)
Q Consensus 315 i~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke 394 (557)
......-|-.+||.....++.+.++|....+.-..|...+...-+....+ .+-..+.++. -+..=...++
T Consensus 36 FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e-~~~~~~~Lq~---------el~~l~~~~~ 105 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ-SYKQVSVLED---------DLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHHHHHH
Confidence 33444556667777777777777777654443333332222111110000 0011222221 1223335678
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhcc
Q 008696 395 EALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSN 474 (557)
Q Consensus 395 ~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sn 474 (557)
.+..+|..||..-| -||-....+...|+-+.+.-+ ....+..=|..+|.+|+ .|...+|-|.
T Consensus 106 ~l~~~ireLEq~ND---dlEr~~R~~~~SleD~e~kln----~aiEr~alLE~El~EKe----~l~~~~QRLk------- 167 (189)
T 2v71_A 106 QLHKYVRELEQAND---DLERAKRATIMSLEDFEQRLN----QAIERNAFLESELDEKE----SLLVSVQRLK------- 167 (189)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHCCC-----------
T ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHH----HHHHHHHHHH-------
Confidence 88999999998887 466666677777776666532 44566677788887755 2234444444
Q ss_pred HHHHHHHHHH
Q 008696 475 DELQEARREL 484 (557)
Q Consensus 475 dELqeARkel 484 (557)
||+-+.|.+|
T Consensus 168 dE~rDLk~El 177 (189)
T 2v71_A 168 DEARDLRQEL 177 (189)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.11 E-value=3.4 Score=34.43 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=40.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce---------eeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---------VRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k---------v~~l~~~-~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+..+.|-|+|.. .+...|++ |+.|.++. ++..++. .| +.|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 83 (113)
T 2cpe_A 15 NSAIYVQGLNDS--------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP-TAKAAVE 83 (113)
T ss_dssp CCEEEEECCCTT--------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHH-HHHHHHH
T ss_pred CCEEEEcCCCCC--------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHH-HHHHHHH
Confidence 356778899753 36678999 99999886 7777763 23 5799999998643 3344443
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.78 E-value=8.6 Score=30.61 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=34.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~--Gh~G~aIv~F~~d 176 (557)
-.+.|-|+|. ..+...|++ |+.|.++ .+....++. -++|+|.|.|.+.
T Consensus 17 ~~l~V~nlp~--------~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 17 STVYVSNLPF--------SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp TSEEEESCCT--------TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred CEEEEECCCC--------CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 3566889975 336778999 9999876 444444433 3689999999763
No 38
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.76 E-value=2.8 Score=35.82 Aligned_cols=57 Identities=18% Similarity=0.248 Sum_probs=39.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce--eeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE--VRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k--v~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~f 186 (557)
.++.|-|+|... +...|++ |+.|.++. +.+.....| ++|+|.|.|.+.- .-..|+.+
T Consensus 26 ~~l~V~nLp~~~--------te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~~ 86 (124)
T 1wel_A 26 FCVYLKGLPFEA--------ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALCR 86 (124)
T ss_dssp CEEEEECCCTTC--------CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHTS
T ss_pred cEEEEeCCCCCC--------CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHHh
Confidence 577889998633 5678899 99999864 344444555 4799999998654 34455543
No 39
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.46 E-value=2.5 Score=34.77 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=41.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC---CCcceEEEEeCCChhchhhHHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE---NPTAQAVVKFNNDWNGFMQASDFE 187 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~---Gh~G~aIv~F~~dw~Gf~~A~~fe 187 (557)
|.++.|-|+|.. .+...|++ |+.|....|....++. -+.|+|.|.|.+. ..-..|+.|+
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~ 77 (104)
T 1wi8_A 15 PYTAFLGNLPYD--------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSALSLN 77 (104)
T ss_dssp CEEEEEESCCSS--------CCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSH-HHHHHHHGGG
T ss_pred CCEEEEeCCCCc--------CCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCH-HHHHHHHhcC
Confidence 467888999763 36678899 9999866666666653 3589999999754 3445555444
No 40
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=77.02 E-value=2.5 Score=33.95 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=39.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~-~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
|.++.|-|+|.. .+...|++ |+.|.++. +..+..+ .| ++|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~-~a~~Ai~ 75 (95)
T 2ek1_A 15 PTVIKVQNMPFT--------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD-EATAAVI 75 (95)
T ss_dssp CEEEEEECCCTT--------CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 567889999863 36778899 99998765 5555543 33 6799999997643 3334443
No 41
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.86 E-value=42 Score=35.41 Aligned_cols=92 Identities=10% Similarity=0.087 Sum_probs=53.3
Q ss_pred HHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008696 242 DIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KDRLHYAFVEETRKMQRLARDNVRRILEE 318 (557)
Q Consensus 242 ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE---k~~l~~~yneE~~kmQ~~a~~~~~ri~~e 318 (557)
.++.+..+.-...|..|++.|..-.+.-...-.-++.++..|+....+ ++....+|.++++.-+..-.+.+..-|..
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ 135 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQR 135 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555566566666666666666666666655555666666655544 55666777777765554444444444444
Q ss_pred HHHhhHHHHHHHhhh
Q 008696 319 QEKLSCELETKKKKL 333 (557)
Q Consensus 319 ~ekl~~eLe~k~~eL 333 (557)
-.-|+.-|+.+..++
T Consensus 136 ir~Lq~~l~~q~~ki 150 (390)
T 1deq_A 136 INLLQKNVRDQLVDM 150 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666665554443
No 42
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=76.77 E-value=3.7 Score=33.78 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=36.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCC-cceEEEEeCCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENP-TAQAVVKFNND 176 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh-~G~aIv~F~~d 176 (557)
+..+.|-|+|.. .+...|++ |+.|.++ .+....+..|. .|+|.|.|.+.
T Consensus 29 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 29 GGKLLVSNLDFG--------VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp SEEEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 356778899763 36678899 9999875 66666666664 79999999854
No 43
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=76.65 E-value=6.1 Score=32.07 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=39.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce---------eeeeccCC--CCcceEEEEeCCChhchhhHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---------VRIFWNEE--NPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k---------v~~l~~~~--Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
+..+.|-|++. ..+...|++ |+.|.++. ++...++. .+.|+|.|.|.+.-.- ..|+
T Consensus 13 ~~~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a-~~Ai 80 (99)
T 2la6_A 13 NNTIFVQGLGE--------NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAI 80 (99)
T ss_dssp CSEEEEECCCS--------SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHH-HHHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHH-HHHH
Confidence 46677889975 346788999 99999876 55666543 3579999999864432 3444
No 44
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=76.46 E-value=2.5 Score=33.28 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=36.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeee-ccC--CC-CcceEEEEeCCChh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIF-WNE--EN-PTAQAVVKFNNDWN 178 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l-~~~--~G-h~G~aIv~F~~dw~ 178 (557)
|-.+.|-|+|. ..+...|++ |+.|.++.-..+ .+. .| +.|+|.|.|.+.-.
T Consensus 4 ~~~l~V~nlp~--------~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 4 PTKVHIGRLTR--------NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp CCEEEEECCCT--------TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 45677889875 336778999 999987654433 333 24 78999999987544
No 45
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=75.96 E-value=5.6 Score=32.55 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH-HHh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD-FEK 188 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~-fek 188 (557)
+-++.|-|+|.. .+...|++ |+.|.++ .|+...++ .-+.|+|.|.|.+--. -..|+. |+.
T Consensus 13 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~A~~~l~g 77 (106)
T 2dgp_A 13 AIKLFIGQIPRN--------LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERES-ALKAQSALHE 77 (106)
T ss_dssp CEEEEEESCCTT--------CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHH-HHHHHHHHTT
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHH-HHHHHHHhcC
Confidence 345668899753 36678899 9999864 44444443 3368999999986433 344443 444
No 46
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=75.76 E-value=11 Score=31.38 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=34.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw~ 178 (557)
.++.|-|++.. .+...|++ |+.|.++. ++...++ ..+.|++.|.|.+.-.
T Consensus 41 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 94 (118)
T 2khc_A 41 CNLFIYHLPQE--------FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDS 94 (118)
T ss_dssp EEEEEECSCTT--------CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHH
Confidence 45668898753 36678999 99998654 4444443 3468999999987543
No 47
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=75.68 E-value=48 Score=30.28 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHH
Q 008696 442 MKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARR 482 (557)
Q Consensus 442 ~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARk 482 (557)
+..+...+......+..++.-...+-..-...+.++..++.
T Consensus 218 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (284)
T 1c1g_A 218 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333333333333333333433333
No 48
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=74.60 E-value=3.1 Score=37.10 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=41.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCC----ceeeeeccCCC-CcceEEEEeCCChhchhhHHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP----VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p----~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~f 186 (557)
.++.|-|+|... +...|++ |+.|.+ ..|+.++++.| ++|+|.|.|.+ -..-..|+.+
T Consensus 45 ~~lfVgnLp~~~--------te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~-~e~a~~Al~~ 107 (136)
T 2hgl_A 45 FVVKLRGLPWSC--------SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS-EDDVKMALKK 107 (136)
T ss_dssp CEEEEESCCTTC--------CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSS-HHHHHHHHTT
T ss_pred CEEEEeCCCCCC--------CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 457788998633 6678899 999986 57888887776 57999999985 3344455543
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=74.20 E-value=26 Score=29.71 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=35.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
+..+.|-|+|.. .+...|++ |+.|.++. ++...++ ..++|+|.|.|.+--
T Consensus 63 ~~~l~v~nlp~~--------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 116 (140)
T 2ku7_A 63 KRVLYVGGLAEE--------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 116 (140)
T ss_dssp CCEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHH
T ss_pred CcEEEEEeCCCC--------CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHH
Confidence 456678899763 36678999 99998764 4444442 346899999998743
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=74.06 E-value=3.5 Score=32.83 Aligned_cols=49 Identities=20% Similarity=0.038 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-CCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-NPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~-Gh~G~aIv~F~~dw 177 (557)
-.+.|-|+|. ..+...|++ |+.|.++....+.... .+.|++.|.|.+.-
T Consensus 9 ~~l~V~nlp~--------~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~ 59 (92)
T 2dgv_A 9 CQIFVRNLPF--------DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPE 59 (92)
T ss_dssp CEEEECSCCT--------TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHH
Confidence 4567889875 346788999 9999876544444333 46799999998643
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.86 E-value=6.5 Score=31.42 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
-++.|-|+|.. .+...|++ |+.|.++. +....++ .-+.|+|.|.|.+--
T Consensus 6 ~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 58 (95)
T 2dnz_A 6 SGLYVGSLHFN--------ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE 58 (95)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHH
Confidence 45678898753 36778999 99998654 4444443 346799999998743
No 52
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=73.20 E-value=27 Score=37.83 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCccccc--------cccc
Q 008696 432 DEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRL 503 (557)
Q Consensus 432 ~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~~~Ig--------iKrm 503 (557)
+++-++++..+.+|.+++.+.++++. ++++....++..|..++...+.|| |++-
T Consensus 70 ~~~~~~l~~~~~~l~~~i~~le~~~~------------------~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~ 131 (485)
T 3qne_A 70 KEDAKDLIAEKEKLSNEKKEIIEKEA------------------EADKNLRSKINQVGNIVHESVVDSQDEENNELVRTW 131 (485)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEe
Confidence 34557788888888888888888874 566666677778887765555555 8898
Q ss_pred CCCC
Q 008696 504 GEID 507 (557)
Q Consensus 504 Geld 507 (557)
|+.-
T Consensus 132 g~~~ 135 (485)
T 3qne_A 132 TPEN 135 (485)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8754
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.51 E-value=4.1 Score=33.37 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=40.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC--CCcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE--NPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~--Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
+.++.|-|+|.. .+...|++ |+.|....+....+.. -+.|+|.|.|.+ ...-..|+.|
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l 75 (103)
T 2dng_A 15 PYTAYVGNLPFN--------TVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALTY 75 (103)
T ss_dssp CEEEEEESCCTT--------CCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHGGG
T ss_pred CeEEEEeCCCCC--------CCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECC-HHHHHHHHhh
Confidence 456778899763 36778999 9999666666666653 357999999985 3334444433
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.14 E-value=3.8 Score=33.12 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=35.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-CC-CcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-EN-PTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~-~G-h~G~aIv~F~~dw 177 (557)
|..+.|-|+|.. .+...|++ |+.|.++. +..+..+ .| +.|+|.|.|.+.-
T Consensus 15 ~~~l~v~nLp~~--------~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~ 68 (98)
T 2cqp_A 15 PTIIKVQNMPFT--------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 68 (98)
T ss_dssp SEEEEEESCCTT--------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHH
Confidence 456778899763 36778899 99999875 4444443 33 5799999997643
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.02 E-value=6 Score=32.36 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=35.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeecc---CCCCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWN---EENPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~---~~Gh~G~aIv~F~~dw~ 178 (557)
.++.|-|+|.. .+...|++ |+.|.++. |+...+ ..-+.|+|.|.|.+--.
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~ 70 (107)
T 2cph_A 16 SKILVRNIPFQ--------ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 70 (107)
T ss_dssp CCEEEESCCTT--------CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHH
T ss_pred CEEEEeCCCCc--------CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHH
Confidence 45678899763 36778999 99998764 444444 33468999999987443
No 56
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=71.89 E-value=4.2 Score=36.55 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=38.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeec-cC-CC-CcceEEEEeCCChhchhhHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFW-NE-EN-PTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~-~~-~G-h~G~aIv~F~~dw~Gf~~A~ 184 (557)
++++.|-|+|.. .+...|.+ |+.|.++....+. +. .| +.|+|+|.|.+ ...-..|+
T Consensus 72 ~~~l~V~nLp~~--------~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai 131 (165)
T 1rk8_A 72 GWILFVTSIHEE--------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAK 131 (165)
T ss_dssp CEEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS-HHHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC-HHHHHHHH
Confidence 577889999863 36788999 9999876554443 32 23 57999999985 33334444
No 57
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=71.15 E-value=5 Score=35.03 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=36.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCCC-cceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEENP-TAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p-~kv~~l~~~~Gh-~G~aIv~F~~dw~ 178 (557)
-.+.|-|+|.. .+...|++ |+.|.+ ..+....++.|. +|++.|.|.+.-.
T Consensus 96 ~~l~v~nl~~~--------~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~ 148 (175)
T 3nmr_A 96 RKLFIGMISKK--------CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAM 148 (175)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred CeEEEcCCCCc--------CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHH
Confidence 35677888753 46788999 999986 455666666665 8999999987543
No 58
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=70.66 E-value=6.5 Score=32.93 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=37.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+..+.|-|++.. .+...|++ |+.|.++. ++...+. ..+.|+|.|.|.+ -..-..|+.
T Consensus 25 ~~~lfV~nLp~~--------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~-~~~A~~Ai~ 85 (109)
T 2rs2_A 25 GCKMFIGGLSWQ--------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 85 (109)
T ss_dssp -CCEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC-HHHHHHHHH
Confidence 456778898753 36677899 99998764 4444443 3468999999975 333344443
No 59
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.34 E-value=8.2 Score=30.20 Aligned_cols=56 Identities=9% Similarity=0.015 Sum_probs=37.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCcee-eeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv-~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
-.+.|-|+|.. .+...|++ |+.|.++.. ....++ ..+.|++.|.|.+--. -..|+.
T Consensus 6 ~~l~v~nlp~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 65 (85)
T 1x4e_A 6 SGLYIRGLQPG--------TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSA-AQKAVT 65 (85)
T ss_dssp CEEEEESCCTT--------CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHH-HHHHHH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHH-HHHHHH
Confidence 35668888753 36678899 999987544 444443 3468999999987433 344444
No 60
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.00 E-value=70 Score=29.69 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=43.7
Q ss_pred hhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhH
Q 008696 345 ALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKL 424 (557)
Q Consensus 345 ~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L 424 (557)
...+..+.+++.|.+. |-.+=.++ |.. .|-.-.++-..+..+.-+|++||..+..+ |.-|.++|
T Consensus 75 ~~aE~~~~~ie~ElEe-------LTasLFeE--AN~----MVa~ar~~~~~~e~r~~~L~~ql~e~~~~---l~~lq~ql 138 (154)
T 2ocy_A 75 TKAEEEADKLNKEVED-------LTASLFDE--ANN----MVADARKEKYAIEILNKRLTEQLREKDTL---LDTLTLQL 138 (154)
T ss_dssp HHHHTHHHHHHHHHHH-------HHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3344455555555553 34444444 443 34455788889999999999999988654 44555666
Q ss_pred HHHhhc
Q 008696 425 EVMKHL 430 (557)
Q Consensus 425 ~Vmkhm 430 (557)
.-+|++
T Consensus 139 ~~LK~v 144 (154)
T 2ocy_A 139 KNLKKV 144 (154)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555553
No 61
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=69.86 E-value=4.2 Score=34.50 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=33.0
Q ss_pred EEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 125 IVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 125 i~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
|-|++.. .+...|++ |..|.|+.-..+.- |+||+.|+|.+.
T Consensus 12 VgNL~~~--------~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~ 53 (89)
T 2wbr_A 12 LKNLTAQ--------IDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTR 53 (89)
T ss_dssp EECCCTT--------CCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSH
T ss_pred EeCCCcc--------CCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCH
Confidence 6788653 35688999 99999988877754 789999999875
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.81 E-value=6 Score=32.26 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=34.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
-.+.|-|+|.. .+...|++ |+.|.++ .+....+..-+.|+|.|.|.+-
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 16 VNLYVKNLDDG--------IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCEEEECCCTT--------CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCH
Confidence 45678899753 36788999 9999875 4455555334679999999853
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=69.43 E-value=4.2 Score=33.08 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=35.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccC--CceeeeeccC--CCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK--PVEVRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~--p~kv~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
+++|-|+|.. .+...|++ |+.|. ...|+...++ ..++|+|.|.|.+--
T Consensus 3 ~i~v~nLp~~--------~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 3 IVMLRMLPQA--------ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp EEEEETCCSS--------CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH
Confidence 4678898863 36778999 99886 3556666654 347799999997643
No 64
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=69.40 E-value=6.6 Score=30.46 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=34.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
+.+.|-|+|.. .+...|++ |+.|.++. +....++ ..++|+|.|.|.+.-
T Consensus 2 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 54 (83)
T 3md1_A 2 FNLFVGDLNVN--------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 54 (83)
T ss_dssp EEEEEECCCTT--------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred eEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHH
Confidence 35678888753 36778899 99998754 4444443 335899999998643
No 65
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.39 E-value=5.9 Score=32.20 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=34.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~d 176 (557)
+.++.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+-
T Consensus 12 ~~~l~v~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 12 EGKLFVGGLSFD--------TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp CSEEEEESCCTT--------CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CCEEEEECCCCC--------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 346778899763 36678899 9999876 44444443 23689999999763
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=69.38 E-value=7.2 Score=31.44 Aligned_cols=48 Identities=10% Similarity=0.132 Sum_probs=33.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
.+.|-|+|. ..+...|++ |+.|.++. +....++ ..+.|+|.|.|.+.-
T Consensus 4 ~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 4 VVYLGSIPY--------DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEESCCT--------TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred EEEEECCCC--------CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 456778875 346788999 99998754 4444443 345899999998643
No 67
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=69.00 E-value=6 Score=32.24 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=38.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
|..+.|-|+|.. .+...|++ |+.|.++ .++...+..| +.|+|.|.|.+.-. -..|+.
T Consensus 9 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDVR--------MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE 68 (102)
T ss_dssp EEEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC-HHHHTT
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHh
Confidence 356778888753 36778899 9999875 4555555544 57999999986443 244443
No 68
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.00 E-value=4.8 Score=33.88 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=35.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-----CCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-----NPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~-----Gh~G~aIv~F~~dw 177 (557)
.+.|-|+|.. .+...|++ |+.|.++.+..+.... -+.|+|.|.|.+.-
T Consensus 10 ~lfVgnLp~~--------~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 10 KVFVGGLPPD--------IDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63 (114)
T ss_dssp CEEEECCCTT--------CCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHH
T ss_pred EEEEcCCCCC--------CCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHH
Confidence 3557888753 36778999 9999998866666543 46899999998743
No 69
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.87 E-value=3.7 Score=34.55 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=37.3
Q ss_pred ceEEEEecccccc---CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETK---DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~---dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
.+++|.|+....+ |..+.......|++ |+.|.++.-..++.. ...|++.|.|.+.-.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~G~afV~f~~~~~ 76 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-HPDGVASVSFRDPEE 76 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-CTTCEEEEECSCHHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-CCCEEEEEEECCHHH
Confidence 5688889855321 22223333467888 999987655555433 478999999986544
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.84 E-value=15 Score=30.11 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=34.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC--CCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE--NPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~--Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|.. .+...|++ |+.|.++. |+..+++. -+.|+|.|.|.+.-
T Consensus 16 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 16 KTVFIRNLSFD--------SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CCEEEESCCTT--------CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 45678899753 36778999 99998754 44444433 36899999998644
No 71
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.75 E-value=6.6 Score=30.01 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.2
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
++.|-|+|.. .+...|++ |+.|.++. +....++ ..+.|+|.|.|.+.- .-..|+.
T Consensus 2 ~l~v~nlp~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~ 60 (77)
T 1uaw_A 2 KMFIGGLSWQ--------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLA 60 (77)
T ss_dssp CEEEESCCSS--------CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTT-HHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHH-HHHHHHH
Confidence 4567888753 36677899 99998654 4444443 346899999998643 3344443
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.39 E-value=8.3 Score=30.82 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=34.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-ee-eeecc-C-CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EV-RIFWN-E-ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv-~~l~~-~-~Gh~G~aIv~F~~d 176 (557)
..+.|-|+|.. .+...|++ |+.|.++ .+ +...+ . ..+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 6 SGIFIGNLDPE--------IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp CEEEEECCCTT--------CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 45678898763 36778999 9999876 44 45554 2 33689999999864
No 73
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.08 E-value=7.7 Score=32.20 Aligned_cols=53 Identities=15% Similarity=0.020 Sum_probs=36.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+..+.|-|+|.. .+...|++ |+.|.++....+... |+|.|.|.+ ...-..|+.
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~-~~~a~~Ai~ 68 (108)
T 1x4c_A 15 ENRVVVSGLPPS--------GSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVR-KEDMTYAVR 68 (108)
T ss_dssp CCEEEEESCCSS--------CCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECC-HHHHHHHHH
Confidence 467789999863 36788999 999986544444322 899999987 333445554
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.02 E-value=10 Score=30.59 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=37.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
.+.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+. ..-..|+.+
T Consensus 12 ~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~ 71 (99)
T 2dgs_A 12 KIFVGGIPHN--------CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVNM 71 (99)
T ss_dssp EEEEESCCSS--------CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHHh
Confidence 4567898753 36678999 9999876 44444443 33789999999763 334455543
No 75
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.90 E-value=6.4 Score=32.10 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=35.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
+.++.|-|+|.. .+...|++ |+.|.++ .|....++ ..+.|+|.|.|.+.-
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (103)
T 2cq0_A 15 NATIRVTNLSED--------TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 68 (103)
T ss_dssp SEEEEEESCCTT--------CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHH
Confidence 355678899763 36778899 9999875 44444443 346799999998643
No 76
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.79 E-value=5.8 Score=32.24 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=36.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+-++.|-|+|.. .+...|++ |+.|.++ +.+....| +.|+|.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nLp~~--------~t~~~l~~~F~~~g~v--~~~~~~~g~~~g~afV~f~~~~-~A~~A~~ 71 (101)
T 2fc9_A 15 SKTLVLSNLSYS--------ATEETLQEVFEKATFI--KVPQNQNGKSKGYAFIEFASFE-DAKEALN 71 (101)
T ss_dssp CSEEEEESCCTT--------CCHHHHHHHCSSCSEE--ECCBCSSSCBCSEEEEECSSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCEE--EEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 456678899763 36778899 9999766 34444444 6799999998533 3344443
No 77
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.71 E-value=6 Score=31.38 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=32.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.+.|-|+|.. .+...|++ |+.|.++.-..+.. .+.|+|.|.|.+.-
T Consensus 7 ~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~--~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 7 GVFVGRCTGD--------MTEDELREFFSQYGDVMDVFIPK--PFRAFAFVTFADDQ 53 (88)
T ss_dssp EEEEESCCSS--------SCHHHHHHHSTTTSCCCEEECCS--SCCSCCEEECSCHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHcCCeeEEEEec--CCCCEEEEEECCHH
Confidence 3557788753 36778999 99998755444432 37899999999844
No 78
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=67.29 E-value=11 Score=31.83 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=36.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
++.+.|-|+|... +...|++ |+.|.++....+..+ |+|.|.|.+ ...-..|+.
T Consensus 16 ~~~l~V~nLp~~~--------t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~-~~~a~~Ai~ 69 (115)
T 3beg_B 16 ENRVVVSGLPPSG--------SWQDLKDHMREAGDVCYADVYRD----GTGVVEFVR-KEDMTYAVR 69 (115)
T ss_dssp -CCEEEEECCSSC--------CTTHHHHHHGGGSCEEEEEECTT----SEEEEEESS-HHHHHHHHH
T ss_pred CcEEEEeCCCCCC--------CHHHHHHHHHhcCCeEEEEEecC----CEEEEEECC-HHHHHHHHH
Confidence 4678899998633 5677889 999987554444332 899999987 444455555
No 79
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=67.25 E-value=8 Score=31.91 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=34.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeee-ccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIF-WNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l-~~~--~Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|. ..+...|++ |+.|.++....+ .+. ..+.|+|.|.|.+.-
T Consensus 27 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 79 (110)
T 1oo0_B 27 WILFVTSIHE--------EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 79 (110)
T ss_dssp EEEEEESCCT--------TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4567889975 336778999 999987644443 433 345799999998643
No 80
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.00 E-value=8.4 Score=31.37 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=35.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWN 178 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw~ 178 (557)
+-++.|-|+|.. .+...|++ |+.|.++. +....++ .-+.|+|.|.|.+.-.
T Consensus 13 ~~~l~V~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2dnm_A 13 MITLKVDNLTYR--------TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRD 67 (103)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSH
T ss_pred CeEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHH
Confidence 346778899763 36778999 99998754 4444443 3367999999987543
No 81
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.70 E-value=17 Score=30.18 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=40.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCChhchhhHHHHHh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDWNGFMQASDFEK 188 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~--Gh~G~aIv~F~~dw~Gf~~A~~fek 188 (557)
..++.|-|++.. .+...|++ |+.|.++ .|....+.. -+.|+|.|.|.+ ...-..|+.|+.
T Consensus 25 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~g 88 (114)
T 2cq4_A 25 ARTVFCMQLAAR--------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLTG 88 (114)
T ss_dssp HTEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHTT
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcCC
Confidence 456778999753 36678899 9999865 455555543 468999999965 444555665543
No 82
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.62 E-value=4.8 Score=32.48 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC-----CCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE-----NPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~-----Gh~G~aIv~F~~d 176 (557)
-++.|-|+|.. .+...|++ |+.|.++. +....++. -+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 6 SGLFIKNLNFS--------TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CCEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 35678888753 36778999 99998764 44444433 3679999999863
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=66.59 E-value=7.1 Score=31.92 Aligned_cols=49 Identities=10% Similarity=0.256 Sum_probs=34.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|.. .+...|++ |+.|.++. +....+. ..+.|+|.|.|.+.-
T Consensus 24 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 76 (106)
T 1p27_B 24 WILFVTGVHEE--------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 76 (106)
T ss_dssp EEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHH
Confidence 56778899763 36678899 99998764 4444443 345799999998743
No 84
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=66.57 E-value=9.1 Score=32.42 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=38.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p-~kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.++.|-|++. ..+...|++ |+.|.+ ..+....+..| ++|+|.|.|.+-- .-..|+.
T Consensus 36 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 94 (124)
T 2kt5_A 36 AKLLVSNLDF--------GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRA-DALKAMK 94 (124)
T ss_dssp EEEEEESCCS--------SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 4677889875 336778999 999985 45566666555 6799999997643 3334443
No 85
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=66.54 E-value=7 Score=32.48 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=35.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc---eeeeeccCC--CCcceEEEEeCCChh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV---EVRIFWNEE--NPTAQAVVKFNNDWN 178 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~---kv~~l~~~~--Gh~G~aIv~F~~dw~ 178 (557)
+++|-|+|... +...|++ |+.|.+. .|+...++. -++||+.|.|.+--.
T Consensus 11 tlfV~nL~~~~--------tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~ 65 (95)
T 2lkz_A 11 TIILRNIAPHT--------VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMD 65 (95)
T ss_dssp EEEEESCCTTC--------CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHH
T ss_pred EEEEeCCCCcC--------CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHH
Confidence 46788997643 6778899 9999854 455555543 367999999987654
No 86
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=66.48 E-value=7.8 Score=30.70 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=33.9
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
+.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 4 l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 4 IYVGNLVYS--------ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEECTT--------SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEECCCCCC--------CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 567788753 36677889 9999865 55555554 346899999998765
No 87
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.03 E-value=7.9 Score=31.41 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=34.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
..+.|-|+|.. .+...|++ |+.|.++. +....++ ..+.|+|.|.|.+--
T Consensus 13 ~~l~V~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 65 (102)
T 2cqb_A 13 RVLYVGGLAEE--------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 65 (102)
T ss_dssp SCEEEESCCSS--------CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 45668899763 36788899 99998764 4444432 347899999998643
No 88
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.00 E-value=8.5 Score=31.40 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=35.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
+..+.|-|+|.. .+...|++ |+.|.++ .|....++ .-+.|+|.|.|.+.-
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (105)
T 1x5u_A 15 DATVYVGGLDEK--------VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 68 (105)
T ss_dssp TTEEEEECCCTT--------CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHH
Confidence 456778899763 36678899 9999875 44444443 346799999997743
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=65.67 E-value=6.8 Score=32.83 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=35.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~--Gh~G~aIv~F~~dw 177 (557)
|-.+.|-|+|. ..+...|++ |+.|.++ .+....++. .+.|+|.|.|.+.-
T Consensus 26 ~~~l~V~nLp~--------~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 79 (108)
T 2jrs_A 26 PMRLYVGSLHF--------NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 79 (108)
T ss_dssp CEEEEEECCCS--------SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 34566889875 346788999 9999875 444444432 35799999998643
No 90
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=65.05 E-value=6.6 Score=37.72 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=37.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCChhc
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNG 179 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~dw~G 179 (557)
..+.|-|+|.. .+...|++ |+.|.++ .|..+.+..| ++|++.|.|.+.-..
T Consensus 97 ~~l~v~nl~~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 97 AALTVKNLSPV--------VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred CcccccCCCCC--------CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 36778898753 36678999 9999875 6666666666 579999999876444
No 91
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=65.00 E-value=9.3 Score=29.82 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=33.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-CCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-NPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~-Gh~G~aIv~F~~dw 177 (557)
++.|-|+|...++. ...+...|++ |+.|.++.-..+.... .+.|+|.|.|.+.-
T Consensus 3 ~l~V~nLp~~~~~~--~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~ 58 (81)
T 2krb_A 3 VIVVDNVPQVGPDR--LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPA 58 (81)
T ss_dssp EEEEESCCCCCTTT--HHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHH
T ss_pred EEEEeCCCCCcHHH--HHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHH
Confidence 46688887532111 0113477888 9999986554444333 46799999998643
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=64.88 E-value=10 Score=32.56 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=36.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCC-CcceEEEEeCCChhchhhHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEEN-PTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~ 184 (557)
++.|-|+|.. .+...|++ |+.|.++. +....++.| +.|+|.|.|.+.-. -..|+
T Consensus 2 ~l~V~nlp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~-a~~A~ 58 (166)
T 3md3_A 2 VLYVGNLDKA--------ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHD-ANIAL 58 (166)
T ss_dssp EEEEEEEETT--------CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHH-HHHHH
T ss_pred EEEECCCCCc--------CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHH-HHHHH
Confidence 3568888763 36778899 99998755 555566544 67999999976433 33444
No 93
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.46 E-value=11 Score=31.39 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~d 176 (557)
-++.|-|+|.. .+...|++ |+.|.++. ++.+.++ .-+.|+|.|.|.+.
T Consensus 18 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 69 (116)
T 2cqd_A 18 TKIFVGGLPYH--------TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 69 (116)
T ss_dssp SEEEEECCCSS--------CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCH
Confidence 45668899763 36778999 99998764 4444443 34789999999753
No 94
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=64.18 E-value=9.7 Score=29.76 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=33.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~d 176 (557)
.++.|-|+|. ..+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+.
T Consensus 7 ~~l~v~nlp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 7 FHVFVGDLSP--------EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp EEEEEESCCT--------TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEEeCCCC--------CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 4567888875 346778999 9999865 44444442 34679999999763
No 95
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=64.05 E-value=9.8 Score=32.05 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=40.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFE 187 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~fe 187 (557)
+.++.|-|++. ..+...|++ |+.|.++ .|...+++ ..+.|++.|.|.+.-. -..|+.|+
T Consensus 36 ~~~l~V~nlp~--------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDY--------GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNS-VDAAVAMD 98 (124)
T ss_dssp HTEEEEEEECT--------TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHH-HHHHHTTT
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHH-HHHHHhcC
Confidence 46778889975 336778999 9999875 46666653 3468999999977543 34455443
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=63.81 E-value=6.9 Score=32.03 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=37.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccC---CCCcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNE---ENPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~---~Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
+.++.|-|++.. .+...|++ |+.|....|....+. .-+.|+|.|.|.+ ...-..|+.|
T Consensus 19 ~~~l~V~nLp~~--------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~l 80 (100)
T 2j76_E 19 PYTAFLGNLPYD--------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSALSL 80 (100)
T ss_dssp -CEEEESCCSSC--------CSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHHHT
T ss_pred CcEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHHhc
Confidence 355668888753 35667888 999985555555543 2368999999975 4444555544
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=63.65 E-value=11 Score=29.63 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=37.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+-.+.|-|+|.. .+...|++ |+.|.++ .+....++ .-+.|++.|.|.+.-. -..|+.
T Consensus 11 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-a~~A~~ 71 (87)
T 3s7r_A 11 AGKMFVGGLSWD--------TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS-VEKVLD 71 (87)
T ss_dssp TTEEEEECCCTT--------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHH-HHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHH-HHHHHH
Confidence 346678899753 36778999 9999864 45555543 2357999999986543 233443
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.52 E-value=11 Score=31.46 Aligned_cols=56 Identities=9% Similarity=-0.044 Sum_probs=38.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
-++.|-|+|... +...|++ |+.|.++. |+...++.| +.|++.|.|.+. ..-..|+.
T Consensus 12 ~~lfV~~Lp~~~--------te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~-e~a~~Ai~ 70 (103)
T 1s79_A 12 RSVYIKGFPTDA--------TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSI-ESAKKFVE 70 (103)
T ss_dssp GCEEEECCCTTC--------CHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSH-HHHHHHHT
T ss_pred CEEEEECCCCCC--------CHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCH-HHHHHHHH
Confidence 456778887633 6778999 99998754 555555444 789999999753 33344444
No 99
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=63.39 E-value=7.5 Score=31.58 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=37.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH-HHhh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD-FEKA 189 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~-fek~ 189 (557)
++.|-|+|. ..+...|++ |+.|.++....+... +.|+|.|.|.+.- .-..|+. |+.+
T Consensus 2 ~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~-~a~~A~~~l~g~ 60 (101)
T 2hvz_A 2 KVYVGNLGT--------GAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPR-DAEDAVRGLDGK 60 (101)
T ss_dssp EEEEECCCS--------SCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHH-HHHHHHHHHHHS
T ss_pred EEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHH-HHHHHHHHHCCC
Confidence 356778875 336778899 999987544433322 8899999997644 3344544 4443
No 100
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.90 E-value=8.7 Score=30.56 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~--Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|.. .+...|++ |+.|.++ .+...+++. -++|+|.|.|.+--
T Consensus 16 ~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (95)
T 2cqc_A 16 CCLGVFGLSLY--------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 68 (95)
T ss_dssp GCEEEESCCSS--------CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHH
Confidence 45668898763 36678999 9999875 455555543 45799999998743
No 101
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=62.76 E-value=5.8 Score=30.25 Aligned_cols=54 Identities=9% Similarity=0.174 Sum_probs=35.6
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+.|-|+|.. .+...|++ |+.|.++. +....++ .-++|+|.|.|.+.- .-..|+.
T Consensus 2 l~v~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPD--------TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCSS--------CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 456677653 36778899 99998754 4333433 346899999998754 3455554
No 102
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=62.10 E-value=12 Score=30.44 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=35.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~dw 177 (557)
+.++.|-|+|.. .+...|++ |+.|.++ .+....++.| +.|+|.|.|.+.-
T Consensus 15 ~~~l~v~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 67 (105)
T 2dnh_A 15 DRKLFVGMLNKQ--------QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHT 67 (105)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHH
Confidence 456778899763 36677899 9999865 4445555544 4799999998743
No 103
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.92 E-value=11 Score=31.45 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=38.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
+-.+.|-|+|.. .+...|++ |+.|.++ .|+...++ .-+.|+|.|.|.+ -..-..|+..
T Consensus 27 ~~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~ 88 (116)
T 1x4b_A 27 FRKLFIGGLSFE--------TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMAA 88 (116)
T ss_dssp HTEEEEECCTTC--------CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHTS
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHHh
Confidence 356778899763 35678899 9999865 55555553 3468999999985 3333444443
No 104
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.75 E-value=14 Score=29.77 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=34.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
-++.|-|+|.. .+...|++ |+.|.++. +....++ .-+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 61 (99)
T 1whw_A 9 GRLFVRNLSYT--------SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE 61 (99)
T ss_dssp EEEEEECCCTT--------CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHH
Confidence 35678898753 36678999 99998754 4444444 336799999998743
No 105
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.61 E-value=8.2 Score=31.32 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=35.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.++.|-|+|.. .+...|++ |+.|. .+..+... ..+.|+|.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~--------~t~~~l~~~F~~~~--~~~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~ 72 (102)
T 2fc8_A 16 KTLFVKGLSED--------TTEETLKESFDGSV--RARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 72 (102)
T ss_dssp SSEEEECCCTT--------CCHHHHHHTSTTCS--EEEEEECSSSCSEEEEEEEECSSH-HHHHHHHH
T ss_pred CEEEEeCCCCc--------cCHHHHHHHhcCCe--EEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 34567898753 36678899 98884 56666543 34679999999863 33344443
No 106
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.49 E-value=10 Score=30.91 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=37.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
-.+.|-|+|.. .+...|++ |+.|.++ .|+...++ .-+.|+|.|.|.+- ..-..|+.
T Consensus 16 ~~l~v~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 75 (103)
T 2cqg_A 16 SDLIVLGLPWK--------TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVMS 75 (103)
T ss_dssp CCEEEESCCSS--------CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHHH
T ss_pred CEEEEEcCCCc--------CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCH-HHHHHHHH
Confidence 35668898753 36677899 9999875 45555554 33579999999763 33334443
No 107
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.17 E-value=71 Score=26.60 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHhhhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHH
Q 008696 261 KIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQL 340 (557)
Q Consensus 261 ~i~~kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L 340 (557)
.+..-...+...+....+...+...+++++..|... +.+.+-....|.+++.+|+..-.+|
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------------------l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------------------MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444455555555555433 3444444455555555555555555
Q ss_pred HH
Q 008696 341 NK 342 (557)
Q Consensus 341 ~k 342 (557)
..
T Consensus 83 ~~ 84 (89)
T 3bas_A 83 KK 84 (89)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 108
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.08 E-value=10 Score=31.32 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=34.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNND 176 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~d 176 (557)
++.|-|++.. .+...|++ |+.|.++ .+....+..| +.|++.|.|.+-
T Consensus 17 ~l~V~nlp~~--------~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 17 TVFVANLDYK--------VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQS 66 (114)
T ss_dssp CEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCH
Confidence 5668899753 36778899 9999864 4556666655 479999999863
No 109
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=60.77 E-value=12 Score=29.16 Aligned_cols=49 Identities=18% Similarity=0.079 Sum_probs=33.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceee-eeccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVR-IFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~-~l~~~--~Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|.. .+...|++ |+.|.++.-. ...++ ..+.|+|.|.|.+.-
T Consensus 8 ~~l~V~nl~~~--------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 60 (85)
T 3mdf_A 8 RVLYVGGLAEE--------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE 60 (85)
T ss_dssp SEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHH
Confidence 45668898753 36678899 9999865443 33432 236899999998643
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=60.53 E-value=13 Score=28.37 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=35.4
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+.|-|+|.. .+...|++ |+.|.++ .+....++ .-++|+|.|.|.+. ..-..|+.
T Consensus 2 l~v~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVN--------TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCE 59 (75)
T ss_dssp EEEECCCSS--------CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCH-HHHHHHHS
T ss_pred EEEecCCCC--------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 356777653 36778999 9999875 44444443 33679999999875 33344444
No 111
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.16 E-value=14 Score=29.80 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=35.5
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~dw 177 (557)
+-++.|-|+|.. .+...|++ |+.|.++ .++...+..| ++|+|.|.|.+.-
T Consensus 17 ~~~l~v~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 69 (100)
T 2do4_A 17 KHKLFISGLPFS--------CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENES 69 (100)
T ss_dssp CSCEEEESCCTT--------CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHH
Confidence 345678899763 36778999 9999875 4555555544 4699999997643
No 112
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=60.09 E-value=12 Score=31.17 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=34.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~d 176 (557)
.++.|-|+|.. .+...|++ |+.|.++. |....++ ..+.|+|.|.|.+-
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 16 FHVFVGDLSPE--------ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp EEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 45668898753 36678999 99998654 5555553 34579999999764
No 113
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=60.07 E-value=5.5 Score=32.01 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=33.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
-++.|-|+|. ..+...|++ |+.|.++.+. .....+.|+|.|.|.+.-
T Consensus 17 ~~l~V~nL~~--------~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~ 64 (96)
T 1fjc_A 17 RTLLAKNLSF--------NITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEA 64 (96)
T ss_dssp GEEEEESCCS--------SCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHH
Confidence 3456788875 336778899 9999665544 344456899999998643
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=59.94 E-value=8.9 Score=32.94 Aligned_cols=47 Identities=11% Similarity=-0.067 Sum_probs=33.8
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccC-CceeeeeccCCCCcceEEEEeCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK-PVEVRIFWNEENPTAQAVVKFNN 175 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~-p~kv~~l~~~~Gh~G~aIv~F~~ 175 (557)
++.+.|-|+|.. .+...|++ |+.|. ++....+. .....|++.|.|.+
T Consensus 28 ~~~l~VgnLp~~--------~te~dL~~~F~~~G~~v~~v~i~-~~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 28 RYRITMKNLPEG--------CSWQDLKDLARENSLETTFSSVN-TRDFDGTGALEFPS 76 (111)
T ss_dssp CEEEEEECSSCC--------CCHHHHHHHHHHHTCCCSEEECS-SCSSSCCEEEEESS
T ss_pred CCEEEEECCCCC--------CCHHHHHHHHHHhCCeeEEEEEE-cCCCCCEEEEEECC
Confidence 467889999763 36788999 99897 44433332 23478999999986
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.93 E-value=13 Score=29.58 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=31.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
-.+.|-|+|.. .+...|++ |+.|.++....+. .|+|.|.|.+.
T Consensus 9 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~ 52 (90)
T 2dnq_A 9 VKLFIGNLPRE--------ATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDK 52 (90)
T ss_dssp EEEEEESCCSS--------CCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSH
T ss_pred eEEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCH
Confidence 35667888763 36778999 9999876555553 68999999863
No 116
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=59.92 E-value=14 Score=29.00 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=37.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFE 187 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~fe 187 (557)
++.|-|+|.. .+...|++ |+.|.++ .+....++ ..+.|+|.|.|.+.- .-..|+.++
T Consensus 8 ~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~~ 68 (89)
T 3ucg_A 8 SIYVGNVDYG--------ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE-SVRTSLALD 68 (89)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTH-HHHHHGGGT
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHhcC
Confidence 5677888753 36678999 9999864 45555443 346899999999754 334444433
No 117
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.65 E-value=13 Score=29.94 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=35.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.++.|-|+|.. .+...|++ |+.|.++.-..+.. + .|+|.|.|.+. ..-..|+.
T Consensus 18 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~v~~v~~~~--~-~g~afV~f~~~-~~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGPN--------TSLAALAREFDRFGSIRTIDHVK--G-DSFAYIQYESL-DAAQAACA 71 (97)
T ss_dssp SCEEEECCCSS--------CCHHHHHHHHHTTSCEEEEEECS--S-SCCEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEeC--C-CCEEEEEECCH-HHHHHHHH
Confidence 45668898763 36788899 99999765544432 2 78999999764 33344444
No 118
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=59.03 E-value=12 Score=30.80 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=34.5
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
.+.|-|+|.. .+...|++ |+.|.++. ++...++ .-+.|+|.|.|.+.-
T Consensus 21 ~lfV~nLp~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~ 72 (99)
T 4fxv_A 21 NLIVNYLPQN--------MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72 (99)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHH
Confidence 4668899863 36778999 99998754 5555544 336799999998643
No 119
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=58.52 E-value=84 Score=33.43 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=55.7
Q ss_pred hhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhh-----------hhHHHHhHHHHHHH---
Q 008696 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNE-----------TTMSLSRMLEEKDR--- 292 (557)
Q Consensus 227 iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e-----------~t~sL~r~meEk~~--- 292 (557)
|-.+|.|+ .-=|....+....+|..++|.=.....+++.|..+++. .+..=++||+|+.+
T Consensus 25 l~d~L~ky------e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~ 98 (411)
T 3ghg_C 25 IADFLSTY------QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEA 98 (411)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh------ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 55666653 33344455555556666666666666666666666533 34444568888654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHH
Q 008696 293 LHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSK 338 (557)
Q Consensus 293 l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k 338 (557)
++..+...|+.+|..+.....+| .+|..+...|+.+|.
T Consensus 99 ~~~~~~~~i~~l~~~~~~~~~~i--------~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 99 SILTHDSSIRYLQEIYNSNNQKI--------VNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhc
Confidence 45555666666666544444333 566666666666553
No 120
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.29 E-value=7.7 Score=31.75 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=38.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
..+.|-|+|.. .+...|++ |+.|.++ .|+...++ .-+.|+|.|.|.+. ..-..|+..
T Consensus 17 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDWS--------TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCTT--------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 45667888753 36778999 9999875 45555543 34679999999864 344455544
No 121
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.93 E-value=15 Score=30.42 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=35.3
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNND 176 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~d 176 (557)
|-.+.|-|+|.. .+...|++ |+.|.++ .+....+..| +.|++.|.|.+.
T Consensus 25 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 25 PTNLYISNLPLS--------MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMEST 76 (114)
T ss_dssp TTEEEEESCCTT--------CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCH
Confidence 456778899763 36678899 9999754 4555555544 479999999863
No 122
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.60 E-value=13 Score=30.20 Aligned_cols=56 Identities=11% Similarity=0.192 Sum_probs=38.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcc-cCCc-eeeeeccCCC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAV-FKPV-EVRIFWNEEN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~-F~p~-kv~~l~~~~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
..+.|-|+|.. .+...|++ |+. |.++ .|....+..| +.|+|.|.|.+--. -..|+.
T Consensus 10 ~~l~V~nLp~~--------~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~-a~~A~~ 69 (104)
T 2dhg_A 10 YSLFVGDLTPD--------VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELE-QKRALT 69 (104)
T ss_dssp CCEEEECCCTT--------CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHH-HHHHHH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHH
Confidence 45668898753 36678899 998 9864 5566666555 57999999986443 334443
No 123
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=57.58 E-value=12 Score=32.91 Aligned_cols=57 Identities=7% Similarity=0.019 Sum_probs=38.9
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC-C-CcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE-N-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~-G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+-++.|-|+|.. .+...|++ |+.|.++ .|..+.++. | +.|+|.|.|.+.-. -..|+.
T Consensus 39 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~Ai~ 99 (156)
T 1h2v_Z 39 SCTLYVGNLSFY--------TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD-AENAMR 99 (156)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH-HHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 457778999753 36778999 9999865 555555543 3 57999999986443 344444
No 124
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.37 E-value=13 Score=30.75 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=33.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
-++.|-|+|. ..+...|++ |+.|.++....+... .|+|.|.|.+.-
T Consensus 26 ~~l~V~nl~~--------~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~ 72 (109)
T 1x4g_A 26 CTVYCGGIAS--------GLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHE 72 (109)
T ss_dssp CEEEEECCSS--------CCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHH
Confidence 4677889875 346788999 999987644444322 789999998744
No 125
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=57.37 E-value=16 Score=30.88 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=34.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~d 176 (557)
-++.|-|+|.. .+...|++ |+.|.++ .|....+..| +.|+|.|.|.+.
T Consensus 8 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 8 GKLFIGGLNRE--------TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp CEEEEECCTTT--------CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 35668898753 46778999 9999865 4555555533 569999999864
No 126
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.14 E-value=9.7 Score=30.90 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=34.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
-++.|-|+|. ..+...|++ |+.|.++ .+...+++ .-+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~--------~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 9 RSVFVGNIPY--------EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp SCEEEESCCT--------TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred cEEEEeCCCC--------cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 3567888875 346778999 9999864 55555553 235799999998643
No 127
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=57.01 E-value=11 Score=32.69 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=35.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC----CcceEEEEeCCChh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN----PTAQAVVKFNNDWN 178 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G----h~G~aIv~F~~dw~ 178 (557)
.+.|-|+|.. .+...|++ |+.|.++ .++...++.+ +.|+|.|.|.+.-.
T Consensus 5 ~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~ 59 (175)
T 3nmr_A 5 KMFVGQVPRT--------WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 59 (175)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHH
Confidence 3567888763 36778899 9999875 4555555554 68999999987643
No 128
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.91 E-value=11 Score=30.28 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=34.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc--eeeeeccC--CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV--EVRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~--kv~~l~~~--~Gh~G~aIv~F~~d 176 (557)
-++.|-|+|. ..+...|++ |+.|.++ .++...++ ..+.|+|.|.|.+-
T Consensus 10 ~~l~V~nLp~--------~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 10 ASLWMGDLEP--------YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp SEEEECSCCT--------TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 4566788875 346788999 9999974 56666654 34669999999854
No 129
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=56.89 E-value=13 Score=35.79 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=41.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChhchhhHHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
-++.|-|+|.. .+...|.+ |+.|.++ .|+...+..|.+|+|.|.|.+ -..-..|+.+
T Consensus 42 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~ 100 (292)
T 2ghp_A 42 TTVLVKNLPKS--------YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITK 100 (292)
T ss_dssp CEEEEEEECTT--------CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTT
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHHh
Confidence 35678899863 36778999 9999864 466666778889999999985 3344455543
No 130
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=56.57 E-value=3.7 Score=29.02 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=16.1
Q ss_pred eeccCCCCCCcCccccHHHHhhhc
Q 008696 40 LRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 40 ~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
-||-||..+ +.+.+.|+-|-.
T Consensus 10 qhcrfckkk---ysdvknlikhir 30 (37)
T 2elu_A 10 QHCRFCKKK---YSDVKNLIKHIR 30 (37)
T ss_dssp CEETTTTEE---CSSHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHH
Confidence 699999733 446899999964
No 131
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=56.30 E-value=7.5 Score=31.95 Aligned_cols=60 Identities=8% Similarity=-0.059 Sum_probs=38.1
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC-C-CcceEEEEeCCChhchhhHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE-N-PTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~-G-h~G~aIv~F~~dw~Gf~~A~ 184 (557)
+++|-|+|.-.... .-.+...|++ |+.|.++. |+...++. | +.|++.|.|.+.-. -..|+
T Consensus 8 ~vfV~nLp~v~~~~--~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~-A~~Ai 71 (100)
T 3ns6_A 8 YIVVNGAPVIPSAK--VPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMND-AKKII 71 (100)
T ss_dssp EEEEESCCCCBGGG--HHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHH-HHHHH
T ss_pred EEEEeCCCcCChHH--HHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHH-HHHHH
Confidence 57788998622111 1235577888 99998654 55555554 3 67999999986433 33344
No 132
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=56.19 E-value=14 Score=31.17 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=35.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
..++.|-|+|.. .+...|.+ |+.|.++. |....++ ..+.|+|.|.|.+.-
T Consensus 22 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 22 GWILFVTGVHEE--------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp SEEEEEESCCTT--------CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 346778999753 36778999 99998765 4344442 335899999998654
No 133
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.00 E-value=16 Score=28.46 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=31.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNN 175 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~ 175 (557)
-++.|-|+|.. .+...|++ |+.|.++....+.. ..|+|.|.|.+
T Consensus 13 ~~l~V~~l~~~--------~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~ 57 (85)
T 2ytc_A 13 TTLYVGGLGDT--------ITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFAT 57 (85)
T ss_dssp CCEEEECCTTT--------SCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESS
T ss_pred cEEEEcCCCCC--------CCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECC
Confidence 34668898753 46788999 99998755444432 36899999986
No 134
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=55.83 E-value=5.6 Score=31.96 Aligned_cols=49 Identities=20% Similarity=0.038 Sum_probs=33.6
Q ss_pred ceEEEEeccccccCCccccCChhhHh----h-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLK----R-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~----~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|.. .+...|+ + |+.|.++....+.....+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nLp~~--------~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~ 62 (97)
T 1nu4_A 9 HTIYINNLNEK--------IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVS 62 (97)
T ss_dssp SEEEEESCCTT--------SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHH
Confidence 35678898753 3566777 8 999987665554432345689999998643
No 135
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.65 E-value=15 Score=30.88 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=33.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
.++.|-|+|. ..+...|++ |+.|.++.-..+-. ..|+|.|.|.+.-.
T Consensus 11 ~~l~V~nLp~--------~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~ 58 (111)
T 1whx_A 11 TVILAKNLPA--------GTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLE 58 (111)
T ss_dssp EEEEEESCCT--------TCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHH
Confidence 3567889875 346788999 99999875444432 56799999986543
No 136
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.60 E-value=16 Score=29.48 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=35.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
-++.|-|+|.. .+...|++ |+.|.|..|..+.-. +|+|.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~--------~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~-~~A~~A~~ 69 (99)
T 2cpd_A 16 KILYVRNLMLS--------TSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNR-EDAVEAMK 69 (99)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCH-HHHHHHHH
Confidence 35668898753 36678999 999977666666544 56999999763 33344444
No 137
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=55.59 E-value=13 Score=32.45 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=32.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
-++.|-|+|.. .+...|++ |+.|.++.-..+. .+++|++.|.|.+.-
T Consensus 74 ~~l~V~nl~~~--------~t~~~l~~~F~~~G~i~~v~i~--~~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 74 CKVYVGNLGNN--------GNKTELERAFGYYGPLRSVWVA--RNPPGFAFVEFEDPR 121 (150)
T ss_dssp CEEEEESCCSC--------CSCHHHHHHHHHHSCEEEEEEC--SSSCSEEEEEESSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhhCCEEEEEEe--eCCCcEEEEEECCHH
Confidence 45668898753 36677899 9999875443332 237899999997643
No 138
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.39 E-value=1.1e+02 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.078 Sum_probs=5.5
Q ss_pred hhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 008696 267 EDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQR 306 (557)
Q Consensus 267 ~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~ 306 (557)
+...++|.-|......|.........-..+...||..+.+
T Consensus 4 knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr 43 (129)
T 3tnu_B 4 RSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNR 43 (129)
T ss_dssp ------------------------------CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4456677777666666665554444444455566655543
No 139
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=55.33 E-value=2.1e+02 Score=31.01 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH---HHHHHHHHHHHHHH
Q 008696 243 IVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE---KDRLHYAFVEETRK 303 (557)
Q Consensus 243 i~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE---k~~l~~~yneE~~k 303 (557)
+..+..|.-..-|..|+|.|..-.+.-...-.-.+.++..|+....+ ++....+|.++++.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ 118 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRR 118 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 44444554444555555555544444444444444444444444433 44445555555544
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=55.26 E-value=17 Score=29.57 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=31.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.+.|-|++.. ..+...|++ |+.|.++....+ ..|+|.|.|.+.-
T Consensus 24 ~l~V~nLp~~-------~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~~ 68 (97)
T 2xnq_A 24 RLFIGNLPLK-------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNPQ 68 (97)
T ss_dssp EEEEESCCSS-------CCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSHH
T ss_pred EEEEeCCCcc-------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCHH
Confidence 4557888630 236778899 999987665555 3789999998743
No 141
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.24 E-value=20 Score=29.82 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=33.7
Q ss_pred cceEEEEeccccccCCccccCChhhHh---h-hcccCCceeeeec-cCC-----CCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLK---R-FAVFKPVEVRIFW-NEE-----NPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~---~-~~~F~p~kv~~l~-~~~-----Gh~G~aIv~F~~dw 177 (557)
.-++.|-|+|... +...|+ + |+.|.++.-..+. +.. .++|+|.|.|.+.-
T Consensus 15 ~~~l~V~nLp~~~--------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~ 74 (111)
T 2cpi_A 15 KNLVFVVGLSQRL--------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSE 74 (111)
T ss_dssp SSCEEEEEECTTT--------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHH
T ss_pred CCEEEEECCCCCC--------CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHH
Confidence 3456788998643 456677 8 9999976544443 322 45689999998743
No 142
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.00 E-value=17 Score=29.30 Aligned_cols=47 Identities=4% Similarity=0.010 Sum_probs=33.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
..+.|-|+|.. .+...|++ |+.|.++....+-. ..|+|.|.|.+.-.
T Consensus 16 ~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~v~~~~---~kg~afV~f~~~~~ 63 (99)
T 2cpj_A 16 SRLFVGNLPPD--------ITEEEMRKLFEKYGKAGEVFIHK---DKGFGFIRLETRTL 63 (99)
T ss_dssp TEEEEESCCTT--------CCHHHHHHHTSTTCCCSEEEEET---TTTEEEEECSSSHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHhhcCCeEEEEEec---CCCEEEEEECCHHH
Confidence 46778899763 36678899 99998765444432 26899999987543
No 143
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=54.67 E-value=9.6 Score=30.45 Aligned_cols=54 Identities=15% Similarity=0.088 Sum_probs=34.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccC---CceeeeeccC--CCCcceEEEEeCCChhchhhHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK---PVEVRIFWNE--ENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~---p~kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
++.|-|++.. .+...|++ |+.|. ...++...++ .-+.|++.|.|.+. ..-..|+
T Consensus 3 ~l~V~nL~~~--------~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~-~~a~~Ai 62 (90)
T 3p5t_L 3 ALYIGNLTWW--------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLM 62 (90)
T ss_dssp -CEEESCCTT--------CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CH-HHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCH-HHHHHHH
Confidence 4567788652 36678899 99998 3455555553 24579999999754 3444555
No 144
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=54.44 E-value=15 Score=30.25 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=35.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCC-CCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEE-NPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~-Gh~G~aIv~F~~dw~ 178 (557)
-++.|-|+|...++. ...+...|++ |+.|.++.-..+-... .+.|+|.|.|.+.-.
T Consensus 16 ~~l~V~nLp~~~~~~--~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDR--LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp SEEEEESCCCCCTTT--TTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSH
T ss_pred CEEEEeCCCcchhhh--hHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHH
Confidence 356788998633211 0114577888 9999986544443333 367999999987543
No 145
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=54.26 E-value=14 Score=32.41 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=37.4
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+.++.|.|+|.. .+...|++ |+.|..+.+. ....-++|++.|.|.+.- .-..|+.
T Consensus 99 ~~~l~v~nlp~~--------~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~-~A~~A~~ 154 (175)
T 1fje_B 99 ARTLLAKNLSFN--------ITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEA-DAEKNLE 154 (175)
T ss_dssp GGEEEEESCCSS--------CCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHH-HHHHHHH
Confidence 457788999753 36678899 9998765554 344457899999998633 3333443
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=54.17 E-value=17 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=33.7
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
.++.|-|++. ..+...|++ |+.|.++.-..+. -+.|+|.|.|.+.-.
T Consensus 28 ~~l~V~nlp~--------~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~ 75 (101)
T 2la4_A 28 TTAYIGNIPH--------FATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQ 75 (101)
T ss_dssp CEEEEESCCT--------TCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHH
T ss_pred CEEEEcCCCc--------ccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHH
Confidence 4567889875 336788999 9999876544443 457899999987543
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=54.16 E-value=15 Score=29.56 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=31.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
.+.|-|+|.. ..+...|++ |+.|.++....+ +.|+|.|.|.+.
T Consensus 12 ~l~V~nlp~~-------~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~ 55 (96)
T 2kvi_A 12 RLFIGNLPLK-------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNP 55 (96)
T ss_dssp EEEEESSTTS-------CCCHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESCH
T ss_pred EEEEeCCCcc-------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCH
Confidence 4557888741 236678899 999987665555 378999999863
No 148
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=54.05 E-value=19 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=25.4
Q ss_pred CChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 140 DSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 140 ~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
.+...|++ |+.|.++.-..+- ...|+|.|.|.+.
T Consensus 49 ~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 49 MTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKM 83 (121)
T ss_dssp CCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSH
T ss_pred CCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCH
Confidence 36788999 9999876544442 4678999999763
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=53.81 E-value=12 Score=30.92 Aligned_cols=51 Identities=16% Similarity=0.054 Sum_probs=36.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
-.+.|-|+|... .+...|++ |+.|.++.-..+ +.|+|.|.|.+.-. -..|+
T Consensus 28 ~~l~V~nl~~~~-------~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~-A~~A~ 79 (110)
T 1wf1_A 28 SRVFIGNLNTAL-------VKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERH-ARAAV 79 (110)
T ss_dssp SEEEECSCCCSS-------CCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHH-HHHHH
T ss_pred cEEEEeCCCccc-------CCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHH-HHHHH
Confidence 367788987530 36778899 999998665555 68999999987553 33444
No 150
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=53.78 E-value=19 Score=31.11 Aligned_cols=57 Identities=5% Similarity=0.125 Sum_probs=38.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
+..+.|-|+|.. .+...|++ |+.|.++ .+....++ ..++|++.|.|.+. ..-..|+.
T Consensus 87 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPD--------VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA-DAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTT--------CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH-HHHHHHHH
T ss_pred CCeEEECCCCCC--------CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH-HHHHHHHh
Confidence 346778898753 36678999 9999865 45555543 34779999999763 33333443
No 151
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=53.61 E-value=34 Score=32.62 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=34.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhc
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNG 179 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~G 179 (557)
.++.|-|++. ..+...|++ |+.|.++....+. .+..|++.|+|.+.-..
T Consensus 208 ~~l~v~nl~~--------~~~~~~l~~~F~~~G~i~~v~~~--~~~~g~afV~f~~~~~A 257 (282)
T 3pgw_A 208 HILFLTNLPE--------ETNELMLSMLFNQFPGFKEVRLV--PGRHDIAFVEFDNEVQA 257 (282)
T ss_pred CEEEEeCCCC--------cCCHHHHHHHHHhcCCeEEEEEe--cCCCcEEEEEeCCHHHH
Confidence 5577888865 236678899 9999876555444 34468999999875433
No 152
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=53.05 E-value=19 Score=33.69 Aligned_cols=64 Identities=8% Similarity=0.147 Sum_probs=41.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc---eeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhhhhcC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV---EVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADH 194 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~---kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~Fe~~~ 194 (557)
+..|-|+|.. .+...|++ |+.|.++ .|+.+....+.+|++.|+|.+ ..-=..|+.-=+.+...+
T Consensus 125 ~l~v~NLp~~--------~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~-~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 125 VLHFFNAPLE--------VTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDS-KSDALETLGFLNHYQMKN 192 (205)
T ss_dssp EEEEEEECTT--------CCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSS-HHHHHHHHHHHTTCEECC
T ss_pred eEEEeCCCCC--------CCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCC-HHHHHHHHHHhCCCCccC
Confidence 4667898753 36788999 9999875 566555554567999999986 333344554333334333
No 153
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.05 E-value=2.2e+02 Score=29.66 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008696 295 YAFVEETRKMQRLARDNVR 313 (557)
Q Consensus 295 ~~yneE~~kmQ~~a~~~~~ 313 (557)
..|..|+.-+-+.-+++.-
T Consensus 324 ~eF~~Eve~L~~i~HrNLV 342 (487)
T 3oja_A 324 ETERLECERENQARQREID 342 (487)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchh
Confidence 3455555555544444443
No 154
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.87 E-value=18 Score=29.62 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=31.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeec--cCC--CCcceEEEEeCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFW--NEE--NPTAQAVVKFNND 176 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p-~kv~~l~--~~~--Gh~G~aIv~F~~d 176 (557)
.+.|-|+|.. .+...|++ |+.|.+ +.-..+. ... -+.|+|.|.|.+-
T Consensus 10 ~l~V~nLp~~--------~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 10 RLFIGGIPKM--------KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp EEEEECCCTT--------SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred EEEEeCCCCc--------CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 4568888753 36778899 999976 4333333 222 4689999999863
No 155
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=52.60 E-value=15 Score=32.25 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=38.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCChhchhhHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
+..+.|-|+|.. .+...|++ |+.|.++ .++...++ ..+.|++.|.|.+.- .-..|+
T Consensus 70 ~~~l~v~nl~~~--------~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~-~a~~A~ 129 (158)
T 2kn4_A 70 MTSLKVDNLTYR--------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR-DAEDAM 129 (158)
T ss_dssp CCEEEEESCCTT--------CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHH-HHHHHH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHH-HHHHHH
Confidence 456778898763 46778899 9999876 45555543 347899999998633 334444
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=52.38 E-value=11 Score=34.84 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=37.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCCcceEEEEeCCChh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
.+.|-|++.. .+...|++ |+.|.++ .++.+.+..+.+|++.|.|.+.-.
T Consensus 105 ~l~v~nl~~~--------~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 105 NIFIKNLDKS--------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 155 (213)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHH
T ss_pred cceECCcccc--------cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHH
Confidence 4567888753 36678999 9999864 566677778889999999977543
No 157
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=52.34 E-value=16 Score=30.53 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
+-.+.|-|++.. .+...|++ |+.|.++....+. .|+|.|.|.+.
T Consensus 31 ~~~l~V~nLp~~--------~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~ 75 (108)
T 2jvo_A 31 NTRLFVRPFPLD--------VQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEA 75 (108)
T ss_dssp CSEEEECSSCTT--------CCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSH
T ss_pred CCEEEEECCCCC--------CCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCH
Confidence 345667888753 36678899 9999876555444 78999999863
No 158
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=52.02 E-value=17 Score=33.41 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=36.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCC-CcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEEN-PTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~G-h~G~aIv~F~~dw 177 (557)
.++.|-|++. ..+...|++ |+.|.++ .|...++..| +.|+|.|.|.+.-
T Consensus 89 ~~l~V~nLp~--------~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~ 140 (177)
T 2f3j_A 89 AKLLVSNLDF--------GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRA 140 (177)
T ss_dssp EEEEEECCCS--------CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHH
Confidence 4677889875 347788999 9999865 5555555544 5799999998643
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=51.96 E-value=18 Score=30.93 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=34.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~d 176 (557)
..+.|-|+|.. .+...|++ |+.|.++ .+....++ .-++|++.|.|.+.
T Consensus 88 ~~l~v~nl~~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 88 FNLFVGDLNVN--------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp EEEEEESCCTT--------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred ceEEECCCCCC--------CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 46778898753 36678999 9999874 45555443 33578999999864
No 160
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=51.86 E-value=18 Score=30.46 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=35.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~--Gh~G~aIv~F~~dw 177 (557)
-++.|-|++. ..+...|++ |+.|.++ .|...+++. -+.|++.|.|.+.-
T Consensus 7 ~~lfV~nL~~--------~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~ 59 (110)
T 3s8s_A 7 KEVTFARLND--------NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTR 59 (110)
T ss_dssp CEEEEESCCT--------TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cEEEEECCCC--------CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHH
Confidence 3567888865 236788999 9999875 556666654 36899999998743
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=51.42 E-value=18 Score=32.18 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=36.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCChh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNNDWN 178 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~-~G-h~G~aIv~F~~dw~ 178 (557)
+.++.|-|+|.. .+...|++ |+.|.++ .+....++ .| +.|++.|.|.+.-.
T Consensus 114 ~~~l~v~nl~~~--------~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPNY--------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCTT--------CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 466778888753 35678899 9999875 55555553 33 58999999987544
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.34 E-value=21 Score=28.44 Aligned_cols=49 Identities=18% Similarity=-0.021 Sum_probs=33.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceee-eeccCCCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVR-IFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~-~l~~~~Gh~G~aIv~F~~dw 177 (557)
+..+.|-|+|.. .+...|++ |+.|.++.-. .+. ....+|.+.|.|.+.-
T Consensus 15 ~~~l~V~nlp~~--------~t~~~l~~~F~~~G~v~~~~~i~-~~~~~~~afV~f~~~~ 65 (96)
T 2e44_A 15 IRKLQIRNIPPH--------LQWEVLDSLLVQYGVVESCEQVN-TDSETAVVNVTYSSKD 65 (96)
T ss_dssp CCCEEEEEECSS--------SCHHHHHHHHHHHSCEEEEEEEC-CSSSSEEEEEEESSHH
T ss_pred CCEEEEEcCCCC--------CCHHHHHHHHHhcCCeEEEEEee-cCCCCCEEEEEECCHH
Confidence 356778899753 36778899 9999876554 232 2334556999998643
No 163
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.33 E-value=1.3e+02 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=2.9
Q ss_pred hhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 008696 266 NEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRL 307 (557)
Q Consensus 266 n~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ~~ 307 (557)
+++..++|.-|......|.........-......||..+.+.
T Consensus 5 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~ 46 (131)
T 3tnu_A 5 EKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRT 46 (131)
T ss_dssp ------------------------------------CHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345567777777766666665555444445555666555443
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=51.15 E-value=19 Score=31.96 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=35.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~d 176 (557)
.++.|-|+|.. .+...|++ |+.|.++. +..+.+. ..++|++.|.|.+.
T Consensus 105 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKED--------TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTTT--------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCCC--------CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 57788999763 36678999 99998764 5555553 33689999999874
No 165
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=51.08 E-value=17 Score=31.47 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=37.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~--Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.++.|-|+|.. .+...|++ |+.|.++ .|...+++. -+.|+|.|.|.+.- .-..|+.
T Consensus 47 ~~l~V~nLp~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~-~A~~Ai~ 106 (129)
T 2kxn_B 47 CCLGVFGLSLY--------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD-DAKEAKE 106 (129)
T ss_dssp SCBCEETCTTS--------CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHH-HHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH-HHHHHHH
Confidence 34557898763 46778999 9999865 455555543 47899999997643 3344443
No 166
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=50.87 E-value=15 Score=28.54 Aligned_cols=49 Identities=12% Similarity=-0.088 Sum_probs=30.7
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hccc----CCc-----eeeeeccCCCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVF----KPV-----EVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F----~p~-----kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
+..+.|-|+|. ..+...|++ |+.| ... .|..++-.. ..|+|.|.|.+--
T Consensus 6 ~~~l~V~nLp~--------~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~ 64 (87)
T 2hzc_A 6 ARRLYVGNIPF--------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVD 64 (87)
T ss_dssp GGEEEEESCCT--------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHH
Confidence 45677889875 336788899 9888 410 222222222 2789999998743
No 167
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=50.80 E-value=16 Score=30.34 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=34.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~d 176 (557)
..+.|-|+|.. .+...|++ |+.|.++ .++...++ .-+.|++.|.|.+.
T Consensus 26 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 26 ANLFIYHLPQE--------FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CCEEEESCCSS--------CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 45678899763 36678999 9999865 55555554 33679999999864
No 168
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=50.08 E-value=15 Score=33.12 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=36.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC---CceeeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK---PVEVRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~---p~kv~~l~~~-~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
-.+.|-|++. ..+...|++ |+.|. ...|+...+. .| ..||+.|.|.+. ..-..|+.
T Consensus 56 ~~lfVgnLp~--------~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~-~~A~~Ai~ 117 (156)
T 3n9u_C 56 AAVYVGSFSW--------WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE-NSVHKLLE 117 (156)
T ss_dssp CEEEEECCCT--------TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH-HHHHHHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH-HHHHHHHH
Confidence 4667888865 336788999 99998 3445555553 23 579999999754 33334443
No 169
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.28 E-value=96 Score=33.07 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=42.0
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCccccc--------ccccC
Q 008696 433 EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRLG 504 (557)
Q Consensus 433 ~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~~~Ig--------iKrmG 504 (557)
++-.+++..+.+|.+++.+.++++. ++++....++..|..++...+.|| |++-|
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g 130 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVE------------------ELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWG 130 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcC
Confidence 4557888889999988888888774 566667777778888776555555 99999
Q ss_pred C
Q 008696 505 E 505 (557)
Q Consensus 505 e 505 (557)
+
T Consensus 131 ~ 131 (455)
T 2dq0_A 131 K 131 (455)
T ss_dssp C
T ss_pred C
Confidence 7
No 170
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.22 E-value=12 Score=31.05 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=32.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-----eeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-----EVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-----kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
-++.|-|+|.. .+...|++ |+.|.++ .+... ...+.|+|.|.|.+.
T Consensus 26 ~~l~V~nLp~~--------~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSPR--------VTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCTT--------CCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCH
Confidence 46678899753 36678888 9888765 23333 445679999999863
No 171
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.13 E-value=42 Score=27.54 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHhhhhHHH
Q 008696 398 SKILQLEKQLDAKQKLEMEIEDLKGKLEV 426 (557)
Q Consensus 398 ~ki~~LekqL~~kQ~LELEi~qLkg~L~V 426 (557)
..|-.||++|++| +-+|++|+..|.-
T Consensus 40 ~~I~eLEk~L~ek---d~eI~~LqseLDK 65 (72)
T 3nmd_A 40 ALIDELELELDQK---DELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3488888888765 6788888888753
No 172
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=49.12 E-value=62 Score=26.76 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCC--CcHHHHHHHHHHHHHHHhHHhhhHHHHHh
Q 008696 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDE--DDAAVQKKMKEMNDELESKIDDLDEMESL 462 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~--~d~~~~~k~~~l~~~L~ek~~el~~~e~~ 462 (557)
+||-+.+-.+|-+| |-+|..|..+|.--.--..| .-.++...+..+..+|.+..+....|+++
T Consensus 21 qrEle~le~~Ie~L----------E~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDL----------EAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666644 44455555555311100001 11244455666677777777776665544
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=49.03 E-value=17 Score=31.41 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=36.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~-~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
++.|-|+|.. .+...|++ |+.|.++ .+....++ .| +.|+|.|.|.+. ..-..|+.
T Consensus 5 ~l~v~nlp~~--------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 63 (168)
T 1b7f_A 5 NLIVNYLPQD--------MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE-MDSQRAIK 63 (168)
T ss_dssp EEEEECCCTT--------CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH-HHHHHHHH
Confidence 4678888763 36778999 9999976 44444443 23 679999999854 33344443
No 174
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=48.90 E-value=84 Score=25.62 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhH
Q 008696 308 ARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLD 355 (557)
Q Consensus 308 a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~ 355 (557)
+-+-.++++.||..||..|.--...|.-|+++|.--....-.+|.-|.
T Consensus 6 ~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~ 53 (70)
T 3brv_B 6 APETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLM 53 (70)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445678999999999999998888999999999876665555555554
No 175
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=48.56 E-value=12 Score=32.29 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=39.6
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce---eeeeccC--CCCcceEEEEeCCChhchhhHHHHHh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---VRIFWNE--ENPTAQAVVKFNNDWNGFMQASDFEK 188 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k---v~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~fek 188 (557)
.+.|-|+|... +...|++ |+.|.++. |+...++ .-+.||+.|.|.+. ..-.-...|..
T Consensus 25 ~lfV~nL~~~~--------te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 25 TIILRNLNPHS--------TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp EEEECSCCTTC--------CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 46678887633 5678899 99998763 5666665 33679999999987 54433344443
No 176
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.44 E-value=22 Score=28.66 Aligned_cols=47 Identities=26% Similarity=0.121 Sum_probs=34.1
Q ss_pred eEEEEeccccccCCccccCChhhHh----h-hcccCCc-eeeeeccCCCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLK----R-FAVFKPV-EVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~----~-~~~F~p~-kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.+.|-|+|.. .+...|+ + |+.|.++ .|+...+..+ .|+|.|.|.+.-
T Consensus 11 ~l~V~nL~~~--------~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~ 63 (96)
T 2dgx_A 11 DVQVSNIDYR--------LSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQ 63 (96)
T ss_dssp EEEEESCCTT--------SCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHH
T ss_pred EEEEECCCCC--------CCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHH
Confidence 4668898753 3566777 8 9999864 4566666666 899999998643
No 177
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=48.28 E-value=16 Score=31.96 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=35.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~d 176 (557)
+.++.|-|+|.. .+...|++ |+.|.++ .|....+. ..+.|++.|.|.+.
T Consensus 47 ~~~l~V~nLp~~--------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 47 MTSLKVDNLTYR--------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 99 (135)
T ss_dssp CCCEEEECCCSS--------CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCH
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCH
Confidence 346778899763 36678899 9999866 45444443 35789999999863
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=47.95 E-value=18 Score=33.63 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=35.5
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCC-CcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEEN-PTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~G-h~G~aIv~F~~dw 177 (557)
-++.|-|+|.. .+...|++ |+.|.++. |+...+..| +.|+|.|+|.+.-
T Consensus 110 ~~l~V~nLp~~--------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPTD--------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCTT--------CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCCc--------CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 56778899863 35678899 99998754 444544444 6799999998744
No 179
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.79 E-value=35 Score=27.22 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=35.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.+.|-|+|.. .+...|++ |+.|.++.-.+.....|. ++.|.|.+ -..-..|+.
T Consensus 10 ~l~V~nl~~~--------~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPRG--------VDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEEECCCTT--------CCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEEECCCCC--------CCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 3557788753 36678899 999998765544333444 99999976 445555555
No 180
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=47.69 E-value=77 Score=28.34 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=39.1
Q ss_pred hhhHHHhhhhHHHHhhcCCCCc----HHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhc------cHHHHHHHHH
Q 008696 414 EMEIEDLKGKLEVMKHLGDEDD----AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQS------NDELQEARRE 483 (557)
Q Consensus 414 ELEi~qLkg~L~Vmkhm~~~~d----~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~s------ndELqeARke 483 (557)
.--|..|++.+.--.++..+.. .++..--.+|...|..-+.+| ++|..+..+-|+.. .+||+. |+.
T Consensus 37 q~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dL---eDLe~sI~ivE~np~kF~l~~~Ei~~-Rr~ 112 (130)
T 4dnd_A 37 QKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDL---EDLEETIGIVEANPGKFKLPAGDLQE-RKV 112 (130)
T ss_dssp HHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCHHHHCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCHHhcCCCHHHHHH-HHH
Confidence 3334445555555555433322 244444555666666666665 46677777767544 778866 776
Q ss_pred HHHhhh
Q 008696 484 LIQGLS 489 (557)
Q Consensus 484 lI~gl~ 489 (557)
.|..++
T Consensus 113 fV~~~r 118 (130)
T 4dnd_A 113 FVERMR 118 (130)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 181
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.65 E-value=1.6e+02 Score=26.54 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008696 387 EEQKREKEEALSKILQLEKQLD 408 (557)
Q Consensus 387 e~hkrEke~~~~ki~~LekqL~ 408 (557)
++-+++...+..+|.+||..|.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666665554
No 182
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.54 E-value=1.3e+02 Score=25.44 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHH----hhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHH
Q 008696 390 KREKEEALSKILQLEKQLDAK----QKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKT 465 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~k----Q~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~ 465 (557)
+.+++.+..+..++|.++... -++|-||..|+-+++++.- +-......+...+..|++.+......|+=+.+
T Consensus 15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~----eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED----EVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888877776543 3356666666666654433 11123344445555555555555433333333
Q ss_pred H
Q 008696 466 L 466 (557)
Q Consensus 466 L 466 (557)
|
T Consensus 91 L 91 (101)
T 3u59_A 91 L 91 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=47.28 E-value=31 Score=29.87 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=37.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-C-CCcceEEEEeCCChh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-E-NPTAQAVVKFNNDWN 178 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~-~-Gh~G~aIv~F~~dw~ 178 (557)
+.++.|-|+|.. .+...|++ |+.|.++. +....++ . -+.|++.|.|.+.-.
T Consensus 94 ~~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 94 AHKLFIGGLPNY--------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TTCEEEECCCTT--------CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CCEEEEEcCCCc--------CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 677889999763 36778999 99998765 4444443 2 357999999987544
No 184
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=46.67 E-value=1.9e+02 Score=27.18 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 008696 392 EKEEALSKILQLEKQLD 408 (557)
Q Consensus 392 Eke~~~~ki~~LekqL~ 408 (557)
++..+..+|..|||+-.
T Consensus 119 e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55567777777777543
No 185
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=46.65 E-value=12 Score=31.67 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=36.8
Q ss_pred eEEEEecccccc--CCccccCChhhHhh-hcccCCceeeee-ccCCC----CcceEEEEeCCChhc
Q 008696 122 MGIIVNIVMETK--DRGSFLDSGYWLKR-FAVFKPVEVRIF-WNEEN----PTAQAVVKFNNDWNG 179 (557)
Q Consensus 122 mgIi~Ni~~e~~--dg~~~G~s~~~L~~-~~~F~p~kv~~l-~~~~G----h~G~aIv~F~~dw~G 179 (557)
+++|.|+.+..+ +......--..|++ |+.|.++.-..+ -+..+ ..|++.|.|.+.-..
T Consensus 7 vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 7 VLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp EEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred EEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 578999977432 32222333467777 889997544444 34443 369999999986543
No 186
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.56 E-value=28 Score=27.58 Aligned_cols=43 Identities=19% Similarity=0.052 Sum_probs=30.9
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
-++.|-|+|.. .+...|++ |+.|.++....+. .|+|.|.|.+-
T Consensus 11 ~~l~V~nLp~~--------~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~ 54 (92)
T 2dgt_A 11 TKLHVGNISPT--------CTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERA 54 (92)
T ss_dssp EEEEEESCCSS--------CCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCH
Confidence 45668898753 36778999 9999876544443 44999999863
No 187
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.54 E-value=30 Score=29.03 Aligned_cols=52 Identities=13% Similarity=0.032 Sum_probs=35.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
.++.|-|+|. ..+...|++ |+.|.++....+-. ..|+|.|+|.. ...-..|+
T Consensus 16 ~~l~V~nLp~--------~~te~~L~~~F~~fG~V~~v~i~~---~kg~aFVef~~-~~~A~~Ai 68 (104)
T 1wex_A 16 PVVHVRGLCE--------SVVEADLVEALEKFGTICYVMMMP---FKRQALVEFEN-IDSAKECV 68 (104)
T ss_dssp SEEEEESCCS--------SCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESS-HHHHHHHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhCCCEEEEEEEC---CCCEEEEEECC-HHHHHHHH
Confidence 4677889875 336778999 99999765444322 26899999986 33334444
No 188
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=46.17 E-value=19 Score=31.10 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=36.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceee--------eeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVR--------IFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~--------~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
++.|-|+|.. .+...|++ |+.|.++... .+.....+.|+|.|.|.+.-. -..|+.
T Consensus 47 ~l~V~nLp~~--------~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~-A~~Ai~ 110 (143)
T 3egn_A 47 RIYVKNLAKH--------VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKA-AAKALK 110 (143)
T ss_dssp EEEEEEECTT--------CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHH-HHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHH-HHHHHH
Confidence 5778899752 36778999 9999876531 112234568999999976433 344444
No 189
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=46.17 E-value=1.9e+02 Score=27.12 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 008696 308 ARDNVRRILEEQEK 321 (557)
Q Consensus 308 a~~~~~ri~~e~ek 321 (557)
|+..+-+||.+.-+
T Consensus 56 AF~E~ik~FeeQ~~ 69 (170)
T 3l4q_C 56 AFNETIKIFEEQGQ 69 (170)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55556667777643
No 190
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=45.99 E-value=25 Score=30.24 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=35.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNND 176 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~d 176 (557)
+.++.|-|+|.. .+...|++ |+.|.++. +....+. ..++|++.|.|.+.
T Consensus 89 ~~~l~v~nl~~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 89 DTNLYVTNLPRT--------ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp TCEEEEESCCTT--------CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCEEEeCCCCC--------CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 356788999763 36678999 99998754 4444443 33579999999873
No 191
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.95 E-value=32 Score=28.80 Aligned_cols=45 Identities=11% Similarity=-0.033 Sum_probs=31.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
.++.|-|+|. ..+...|++ |+.|.++.-..+-. + .|+|.|+|...
T Consensus 16 ~~l~V~nLp~--------~~te~~L~~~F~~fG~v~~v~i~~--~-kg~aFVef~~~ 61 (101)
T 2cq1_A 16 RVLHIRKLPG--------EVTETEVIALGLPFGKVTNILMLK--G-KNQAFLELATE 61 (101)
T ss_dssp SEEEEESCCT--------TCCHHHHHHTTTTTSCEEEEEEET--T-TTEEEEEESSH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEC--C-CCEEEEEECCH
Confidence 4567789874 346778999 99998754333322 2 78999999874
No 192
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.62 E-value=1.3e+02 Score=27.39 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 385 LVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 385 Lve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
.|-.-.++-..+..+.-+|+.||..+..| |.-|..+|.-+|++
T Consensus 90 MVa~ar~~~~~~e~r~~~L~~ql~e~e~l---l~~lq~QL~~LK~v 132 (135)
T 2e7s_A 90 LVADARMEKYAIEILNKRLTEQLREKDML---LDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHTTTHHHHC---C-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34455788889999999999999998654 55566777766664
No 193
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.16 E-value=23 Score=31.44 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=38.0
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC-C-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE-N-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~-G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
-.+.|-|+|.. .+...|++ |+.|.++ .+....++. | +.|+|.|.|.+. ..-..|+.
T Consensus 14 ~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 73 (196)
T 1l3k_A 14 RKLFIGGLSFE--------TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAMN 73 (196)
T ss_dssp GEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCH-HHHHHHHh
Confidence 45778899863 36778899 9999875 455555543 3 689999999763 33444443
No 194
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=44.94 E-value=24 Score=30.17 Aligned_cols=47 Identities=9% Similarity=0.141 Sum_probs=33.4
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC-CC-CcceEEEEeCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE-EN-PTAQAVVKFNND 176 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~-~G-h~G~aIv~F~~d 176 (557)
++.|-|+|.. .+...|++ |+.|.++. +....++ .| +.|+|.|.|.+.
T Consensus 4 ~l~v~nlp~~--------~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 54 (167)
T 1fxl_A 4 NLIVNYLPQN--------MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 54 (167)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEcCCCCC--------CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCH
Confidence 4667888763 36778999 99998764 4445444 33 569999999863
No 195
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.47 E-value=23 Score=28.00 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=31.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|. ..+...|++ |+.|.++.-..+. .|++.|.|.+.-
T Consensus 10 ~~l~V~nlp~--------~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~ 54 (90)
T 2dnp_A 10 WKIFVGNVSA--------ACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEA 54 (90)
T ss_dssp CCEEEESCCT--------TCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHH
T ss_pred CEEEEeCCCC--------CCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHH
Confidence 3566889875 336778999 9999975544443 449999998643
No 196
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=43.62 E-value=17 Score=31.19 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=36.7
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC--CCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE--NPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~--Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
++.|-|++.. .+...|++ |+.|.++ .|....+.. -+.|+|.|.|.+.-. -..|+.
T Consensus 44 ~l~V~nLp~~--------~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 102 (139)
T 1u6f_A 44 NLMVNYIPTT--------VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSS-AQQAIA 102 (139)
T ss_dssp EEEEESCSTT--------CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHH-HHHHHH
Confidence 4667888753 36678999 9999875 555555543 358999999986433 333443
No 197
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=43.51 E-value=1.5e+02 Score=25.13 Aligned_cols=72 Identities=26% Similarity=0.307 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhhHH----hhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHH
Q 008696 391 REKEEALSKILQLEKQLDAK----QKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTL 466 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~k----Q~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~L 466 (557)
.+++.+..+.-++|.++... -++|-||..|+-+++++.- +=......+.+....|++.+......|+-+.+|
T Consensus 16 ~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~----eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 16 LDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED----SRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777665432 3467777777777776543 111334455555566666655555444444444
No 198
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=43.48 E-value=17 Score=31.34 Aligned_cols=55 Identities=9% Similarity=-0.151 Sum_probs=35.6
Q ss_pred eEEEEecccccc--CCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETK--DRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~--dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
+++|.|+.+..+ |..+..+=-..|++ |+.|.++.-..+. .....|++.|.|.+.-
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~-~~~~~G~~fV~f~~~e 66 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVD-KNSAQGNVYVKCPSIA 66 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEEC-TTCTTCCEEEECSSHH
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEe-cCCCcEEEEEEECCHH
Confidence 588999988543 43343334456677 8889876544442 2234899999998753
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=43.44 E-value=28 Score=30.00 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=34.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
.+.|-|+|.. .+...|++ |+.|.++. ++...++ .-+.|+|.|.|.+.-
T Consensus 5 ~l~v~nLp~~--------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 5 KMFIGGLNWD--------TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp EEEECSCCTT--------CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 4667788763 36778899 99998754 4444443 347799999998754
No 200
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=43.24 E-value=11 Score=22.36 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=14.5
Q ss_pred CeeeccCCCCCCcCccccHHHHhhh
Q 008696 38 GTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 38 ~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
+.|.|+.|... +.....|..|.
T Consensus 1 ~~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 2m0f_A 1 GPLKCRECGKQ---FTTSGNLKRHL 22 (29)
T ss_dssp CCEECTTTSCE---ESCHHHHHHHH
T ss_pred CCccCCCCCCc---cCChhHHHHHH
Confidence 36899999732 33455677774
No 201
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.08 E-value=1.6e+02 Score=25.34 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 008696 385 LVEEQKREKEEALSKILQLEKQLDAKQ 411 (557)
Q Consensus 385 Lve~hkrEke~~~~ki~~LekqL~~kQ 411 (557)
.|-.-.++-..+..+.-+|+.||..+.
T Consensus 70 MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 70 MVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344457788888999999999998774
No 202
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=42.48 E-value=66 Score=33.88 Aligned_cols=55 Identities=15% Similarity=0.421 Sum_probs=37.6
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCChhchhhHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~-~G-h~G~aIv~F~~dw~Gf~~A~ 184 (557)
-++.|-|++.. .+...|.+ |+.|.++ .|..+++. .| +.|||.|.|..--. -..|+
T Consensus 103 ~~lfV~nL~~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNYD--------TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 46778898753 36678889 9999876 45555553 33 58999999976543 34444
No 203
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.35 E-value=1.4e+02 Score=31.73 Aligned_cols=75 Identities=8% Similarity=0.119 Sum_probs=41.9
Q ss_pred hhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHHHHHHhhh-----------hhHHHHhHHHHHHHH--
Q 008696 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNE-----------TTMSLSRMLEEKDRL-- 293 (557)
Q Consensus 227 iG~~Lrk~gdLKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~elE~k~~e-----------~t~sL~r~meEk~~l-- 293 (557)
|-.+|.|. .--|....+....+|.-|.|.-...+.+++.+...++. .+.+.++|+++..+|
T Consensus 25 i~d~L~k~------e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~ 98 (409)
T 1m1j_C 25 IADFFNKY------RLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHH------HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 44555553 33344455555566666666666666777777776555 366777777765544
Q ss_pred -HHHHHHHHHHHHHH
Q 008696 294 -HYAFVEETRKMQRL 307 (557)
Q Consensus 294 -~~~yneE~~kmQ~~ 307 (557)
.......|+.||..
T Consensus 99 ~~~~~~~~i~~l~~~ 113 (409)
T 1m1j_C 99 TILAHENTIQQLTDM 113 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHH
Confidence 23344444444433
No 204
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=42.22 E-value=32 Score=32.78 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=37.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCCCC-cceEEEEeCCCh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEENP-TAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~Gh-~G~aIv~F~~dw 177 (557)
+.++.|-|+|... -+...|++ |+.|.++ .+....++.|. +|++.|.|.+.-
T Consensus 184 ~~~l~v~nlp~~~-------~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 184 SRCLCVDRLPPGF-------NDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CSEEEEECCCTTC-------CCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ccEEEEecCCccc-------CCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 4567788987531 14577889 9999864 56666666774 899999998654
No 205
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=42.13 E-value=23 Score=28.77 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=31.1
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
++.|-|+|.. .+...|++ |+.|.++....+. .|++.|.|.+.-
T Consensus 13 ~l~V~nl~~~--------~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~ 56 (103)
T 2dgu_A 13 VLFVRNLANT--------VTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERD 56 (103)
T ss_dssp CEEEECCCTT--------CCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHH
Confidence 4668898753 36778999 9999876555443 569999998643
No 206
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=42.03 E-value=36 Score=32.60 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=36.2
Q ss_pred ecceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCC---CCcceEEEEeCCC
Q 008696 119 WPWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEE---NPTAQAVVKFNND 176 (557)
Q Consensus 119 WPwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~---Gh~G~aIv~F~~d 176 (557)
-+.++.|.|+|... .+...|++ |+.|.++. |+...+.. .++|++.|.|.+.
T Consensus 209 ~~~~l~v~nlp~~~-------~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 209 EGREIMIRNLSTEL-------LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTTEEEEEEECTTT-------CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCceEEEECCCccc-------CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 35678889997530 35678899 99998754 55554443 3679999999764
No 207
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=40.78 E-value=40 Score=28.74 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=34.3
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-CC-CcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-EN-PTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~-~G-h~G~aIv~F~~d 176 (557)
..+.|-|+|.. .+...|++ |+.|.++ .+....+. .| ++|++.|.|.+.
T Consensus 89 ~~l~v~nl~~~--------~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 89 ANLYVSGLPKT--------MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CcEEECCCCCc--------CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 45778898753 36788999 9999875 45555443 33 479999999874
No 208
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.77 E-value=17 Score=28.98 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=32.3
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCC-ceeeeeccCCCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKP-VEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p-~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.+.|-|+|.. .+...|++ |+.|.+ +....+. +.|+|.|.|.+.-
T Consensus 10 ~l~V~nLp~~--------~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~ 55 (93)
T 2cqh_A 10 KLYIGNLSPA--------VTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQN 55 (93)
T ss_dssp CEEEECCCTT--------CCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHH
Confidence 4567888753 36778899 999998 6655552 4789999998643
No 209
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.35 E-value=29 Score=29.77 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=32.1
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~d 176 (557)
+..+.|-|+|. ..+...|++ |+.|.++. |+.+.+ .|+|.|+|...
T Consensus 16 ~~~LfV~nLp~--------~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 16 SRVIHIRKLPI--------DVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CCEEEECSCCT--------TSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSH
T ss_pred CCEEEEeCCCC--------CCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCH
Confidence 45667789875 236778999 99998754 444432 68999999864
No 210
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=40.26 E-value=14 Score=23.66 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=16.6
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.||.|... +.....|.+|-.
T Consensus 8 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 32 (37)
T 1p7a_A 8 GIKPFQCPDCDRS---FSRSDHLALHRK 32 (37)
T ss_dssp CSSSBCCTTTCCC---BSSHHHHHHHHG
T ss_pred CCCCccCCCCCcc---cCcHHHHHHHHH
Confidence 3567999999733 334556777743
No 211
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=39.63 E-value=1.6e+02 Score=31.91 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=32.8
Q ss_pred HHH-HHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCccccc---------ccccCCC
Q 008696 439 QKK-MKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG---------VKRLGEI 506 (557)
Q Consensus 439 ~~k-~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~~~Ig---------iKrmGel 506 (557)
+.+ +..|.+++.+.++++. ++++....++..+..++...+.|| |++-|+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~------------------~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~v~~~g~~ 168 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQ------------------QLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNT 168 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCcccCcEEEEecCCC
Confidence 555 6666666666666653 466666677777777765444444 8888874
No 212
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=39.62 E-value=25 Score=27.85 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=32.9
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.+.|-|+|.. .+...|++ |+.| ++.-..+ + .+.|+|.|.|.+. ..-..|+.
T Consensus 7 ~l~V~nLp~~--------~t~~~l~~~F~~~-~v~~~~i--~-~~~g~afV~f~~~-~~a~~Ai~ 58 (88)
T 1wg1_A 7 GILVKNLPQD--------SNCQEVHDLLKDY-DLKYCYV--D-RNKRTAFVTLLNG-EQAQNAIQ 58 (88)
T ss_dssp CEEEESCCSS--------CCHHHHHHHTCSS-CCCCEEE--E-GGGTEEEECCSCH-HHHHHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHhhC-CeEEEEE--e-CCCcEEEEEECCH-HHHHHHHH
Confidence 4567888753 36778999 9999 5433333 1 5779999999754 33334443
No 213
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.35 E-value=58 Score=27.31 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=28.1
Q ss_pred cCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 139 LDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 139 G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
+.+...|++ |+.|.++.-..+- ..+.|+|.|+|...-
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVK 65 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHH
Confidence 457888999 9999976544443 467899999998744
No 214
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=37.82 E-value=44 Score=30.04 Aligned_cols=47 Identities=9% Similarity=0.136 Sum_probs=33.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC-C-CCcceEEEEeCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE-E-NPTAQAVVKFNN 175 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~-~-Gh~G~aIv~F~~ 175 (557)
-++.|-|++.. .+...|++ |+.|.++ .++.+.++ . -+.|++.|.|.+
T Consensus 126 ~~l~v~nlp~~--------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQD--------LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCTT--------CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCCc--------CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 46778898753 36788999 9999865 45555543 2 347999999976
No 215
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=37.80 E-value=51 Score=27.65 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=49.0
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccCC---CCcceEEEEeCCChhchhhHHHHHhhhhhcCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNEE---NPTAQAVVKFNNDWNGFMQASDFEKAFDADHQG 196 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~~---Gh~G~aIv~F~~dw~Gf~~A~~fek~Fe~~~~G 196 (557)
+++|.|+.+..+ +.-.....|++ |+.|.++ .|....++. ...|++.|.|.+.-..-.-...|+..+
T Consensus 10 ~l~l~Nm~~~~~---l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~------ 80 (105)
T 2pe8_A 10 VVLLRNMVGAGE---VDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY------ 80 (105)
T ss_dssp EEEEESSSCSCC---C---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE------
T ss_pred EEEEEcCCChHH---hhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE------
Confidence 678889875321 11124678888 9999875 454444432 347999999987644332222232221
Q ss_pred hhhhhhhcCCCCCceeeeecccCCCCC
Q 008696 197 KRHWIARKESPGLRIYGWFARADDNTS 223 (557)
Q Consensus 197 RkdW~~~~~~~~~~LYGW~AradD~~~ 223 (557)
-. ++.|+--.|..++|..
T Consensus 81 --------~~-Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 81 --------FG-GRVVKACFYNLDKFRV 98 (105)
T ss_dssp --------ET-TEECEEEECCHHHHHT
T ss_pred --------EC-CcEEEEEEcCHHHhhh
Confidence 11 5677777777666643
No 216
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.55 E-value=1e+02 Score=25.62 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhH
Q 008696 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLD 457 (557)
Q Consensus 400 i~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~ 457 (557)
+++|..||+ .|.-||.+|+|.+++.-| .|..|.....+-..+|+
T Consensus 22 ~~~Lq~Ql~---~Lq~Ev~~LRGqiE~~~~-----------~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLS---DNQSDIDSLRGQIQENQY-----------QLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 456666665 688899999999998776 34445555545454443
No 217
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.14 E-value=2.1e+02 Score=25.03 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 008696 342 KREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK 412 (557)
Q Consensus 342 k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 412 (557)
..+.+=..-|+||....+.-......++..++.++.+. -..+.+||-+|.+||.....
T Consensus 46 ~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~-------------Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 46 AHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAA-------------VSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 33333344678887777766677788888888775443 34567899999999877654
No 218
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.07 E-value=1.5e+02 Score=26.44 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhHHhhhHHHHHhHHHHH
Q 008696 439 QKKMKEMNDELESKIDDLDEMESLNKTLI 467 (557)
Q Consensus 439 ~~k~~~l~~~L~ek~~el~~~e~~nq~Li 467 (557)
.-.|..|+.+|++...+++.+-.-|+.|-
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 33445555566666666665555555443
No 219
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.96 E-value=17 Score=21.51 Aligned_cols=22 Identities=14% Similarity=0.531 Sum_probs=14.6
Q ss_pred CeeeccCCCCCCcCccccHHHHhhh
Q 008696 38 GTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 38 ~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
..|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQR---SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSCE---ESSHHHHHHHH
T ss_pred cCccCCCcChh---hCCHHHHHHHH
Confidence 46999999733 33455677774
No 220
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=36.52 E-value=53 Score=27.85 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=31.3
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
++-|-|+|. ..+...|++ |+.|.++.-..+-- ..|+|.|+|.+.-
T Consensus 23 ~l~V~NLp~--------~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~ 68 (100)
T 3r27_A 23 VVHIRGLID--------GVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVL 68 (100)
T ss_dssp EEEEESCCT--------TCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHH
T ss_pred EEEEeCCCC--------CCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHH
Confidence 466789875 336778999 99998755333321 3589999998643
No 221
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=36.25 E-value=2.6e+02 Score=30.41 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=53.6
Q ss_pred HHHHHHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 008696 316 LEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEE 395 (557)
Q Consensus 316 ~~e~ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~ 395 (557)
+.++++|+..|...+.++.+=...++.++++ +.-.+-|||.|..+.-.+ .+||+.
T Consensus 348 vae~~~lrQRlddArNEItsaeSaInslqaq---------------------vSa~t~e~k~A~d~l~a~----~kek~~ 402 (602)
T 1cii_A 348 VAEWDKLRQRLLDARNKITSAESAVNSARNN---------------------LSARTNEQKHANDALNAL----LKEKEN 402 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 3466777766777777666655555433321 112233333333332111 156777
Q ss_pred HHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 396 ALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 396 ~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
+.+.+-.+.+...++++=+-|..+++..+..+--+
T Consensus 403 ~~n~~a~~~~KiAE~KrK~dE~~aIKDAVkfTAdF 437 (602)
T 1cii_A 403 IRNQLSGINQKIAEEKRKQDELKATKDAINFTTEF 437 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 77777777777777777777888888888766443
No 222
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.81 E-value=2.7e+02 Score=25.79 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhH
Q 008696 384 RLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLN 463 (557)
Q Consensus 384 kLve~hkrEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~n 463 (557)
..+..-+.|...+..+|.+|+..|..|.++-- .+..-+..|+-++..-++.+..++.-|
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e---------------------~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTE---------------------RLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777788888888888777775422 123334445555555555555556666
Q ss_pred HHHH
Q 008696 464 KTLI 467 (557)
Q Consensus 464 q~Li 467 (557)
+.||
T Consensus 127 ~~LV 130 (152)
T 3a7p_A 127 SQLV 130 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 223
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=35.79 E-value=54 Score=29.43 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=38.0
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccC--CCCcceEEEEeCCChhchhhHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNE--ENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
..++.|-|+|.. .+...|++ |+.|.++. ++.+... .-+.|+|.|.|.+. ..-..|+.
T Consensus 28 ~~~l~V~nLp~~--------~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 88 (216)
T 2qfj_A 28 MSRVYVGSIYYE--------LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP-EAAQLALE 88 (216)
T ss_dssp HTEEEEECCCTT--------CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH-HHHHHHHH
T ss_pred CCEEEEECCCCC--------CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH-HHHHHHHH
Confidence 346788999863 36778999 99998754 5554543 23789999999754 33344443
No 224
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=35.50 E-value=9.1 Score=31.04 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=38.6
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccC--CCCcceEEEEeCCChhchhhHHHH
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNE--ENPTAQAVVKFNNDWNGFMQASDF 186 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~--~Gh~G~aIv~F~~dw~Gf~~A~~f 186 (557)
+-.+.|-|+|.. .+...|++ |+.|.++....+... .-+.|+|.|.|.+. ..-..|+.|
T Consensus 17 ~~~l~V~nLp~~--------~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l 77 (101)
T 1fj7_A 17 PFNLFIGNLNPN--------KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALEL 77 (101)
T ss_dssp SEEEEEECCCTT--------SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHHG
T ss_pred CCEEEEeCCCCC--------CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCH-HHHHHHHhc
Confidence 346778899753 36778899 998887655333332 24679999999763 444556553
No 225
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.17 E-value=19 Score=22.94 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
...|.||.|... +.....|..|..
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2els_A 7 GKIFTCEYCNKV---FKFKHSLQAHLR 30 (36)
T ss_dssp CCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCEECCCCCce---eCCHHHHHHHHH
Confidence 467999999733 334455667743
No 226
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.90 E-value=43 Score=29.16 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=33.1
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCCh
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.++.|-|+|.. .+...|++ |+.|.++. |..+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~~--------vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPID--------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCTT--------CCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCCC--------CCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHH
Confidence 46778898753 36778999 99998654 555543 689999998744
No 227
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=34.55 E-value=3e+02 Score=26.10 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 008696 265 KNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQ-RLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNK 342 (557)
Q Consensus 265 kn~~l~elE~k~~e~t~sL~r~meEk~~l~~~yneE~~kmQ-~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k 342 (557)
..+++.+++..+...-.++...+++-..|...|..-...|+ ..+...+... |..-|...+.+.|.-|..|.+
T Consensus 77 ~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~------L~~~L~~a~~e~eeeS~~l~~ 149 (192)
T 2p22_C 77 QFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIA------LKKKLEQNTKKLDEESSQLET 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33444677777777788888888888888888876666664 4445555533 556667777777777776654
No 228
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.25 E-value=20 Score=22.65 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=16.0
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.|+.|... +.....|..|-
T Consensus 6 ~~~~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2elr_A 6 SGKTHLCDMCGKK---FKSKGTLKSHK 29 (36)
T ss_dssp CCSSCBCTTTCCB---CSSHHHHHHHH
T ss_pred CCCCeecCcCCCC---cCchHHHHHHH
Confidence 3567999999733 33455677774
No 229
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=33.88 E-value=45 Score=29.07 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=30.4
Q ss_pred eEEEEeccccccCCccccCChhhH----hh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWL----KR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L----~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
++.|-|++... +...| .+ |+.|.++.-..+-.....+|+|.|.|.+-
T Consensus 31 ~LfV~nL~~~~--------~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINPEV--------PKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCTTS--------CHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSH
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCH
Confidence 56788987422 34444 46 88998764433333345789999999874
No 230
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.75 E-value=2.3e+02 Score=30.53 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhhhhc-----cCCCCHHHHHHHhhhhHhH---HHHHHHhHHHhhhhhHHHHHHHhhhhhHHHHhHHHH-HHHHHHHHHH
Q 008696 229 EYLRQE-----GKLRTVSDIVQEDAQSKIH---VVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEE-KDRLHYAFVE 299 (557)
Q Consensus 229 ~~Lrk~-----gdLKTi~ei~~E~~rk~~~---lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~r~meE-k~~l~~~yne 299 (557)
.||.+. .+|..+.+++.+-++.+.. +|..|...+..+...+..++...++.+..|.+.... ++.+...+-.
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~ 168 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPS 168 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHH
Q 008696 300 ETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWS 337 (557)
Q Consensus 300 E~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~eL~~r~ 337 (557)
.|+.++........+| ..|+.+...+...|
T Consensus 169 ~i~~L~~~~~~l~~ki--------~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKI--------QKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh
No 231
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.64 E-value=3.3e+02 Score=26.25 Aligned_cols=9 Identities=22% Similarity=0.114 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 008696 475 DELQEARRE 483 (557)
Q Consensus 475 dELqeARke 483 (557)
..+...|+-
T Consensus 179 ~~Yerir~~ 187 (256)
T 3na7_A 179 SFYERIRRW 187 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 345555553
No 232
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.61 E-value=20 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=15.1
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhh
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
...|.|+.|... +.....|..|-
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2elt_A 7 GKPYKCPQCSYA---SAIKANLNVHL 29 (36)
T ss_dssp CCSEECSSSSCE---ESSHHHHHHHH
T ss_pred CCCCCCCCCCcc---cCCHHHHHHHH
Confidence 457999999733 33445676774
No 233
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.17 E-value=21 Score=21.05 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=15.2
Q ss_pred CeeeccCCCCCCcCccccHHHHhhhc
Q 008696 38 GTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 38 ~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
..|.|+.|... +.....|..|-.
T Consensus 2 k~~~C~~C~~~---f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGRS---FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCCE---ESCHHHHHHHHH
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 46999999733 334556777753
No 234
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.13 E-value=22 Score=22.73 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=15.6
Q ss_pred cCCeeeccCCCCCCcCcccc-HHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKH-KDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~-~~LLqHA 62 (557)
....|.|+.|... +..- ..|..|-
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~~L~~H~ 30 (37)
T 2elp_A 6 SGRAMKCPYCDFY---FMKNGSDLQRHI 30 (37)
T ss_dssp CCCCEECSSSSCE---ECSSCHHHHHHH
T ss_pred CCCCeECCCCChh---hccCHHHHHHHH
Confidence 3567999999733 2333 5677774
No 235
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.83 E-value=2.3e+02 Score=26.53 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 008696 332 KLDSWSKQLNKREALTERERQKLDADRQQ 360 (557)
Q Consensus 332 eL~~r~k~L~k~~~~~~~er~kL~~e~~k 360 (557)
.++.-.+++.++.++-..+|-++..++.|
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555445555555555443
No 236
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.58 E-value=1.1e+02 Score=25.05 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHH
Q 008696 442 MKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQ 486 (557)
Q Consensus 442 ~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~ 486 (557)
|.+|+.-|+.|.+++...+.....|-..-..-.+++++-|.+|-+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888877777777888888877754
No 237
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=32.21 E-value=1.3e+02 Score=25.67 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=16.1
Q ss_pred hhhhhhHHHhhhhHHHHhhc
Q 008696 411 QKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 411 Q~LELEi~qLkg~L~Vmkhm 430 (557)
-++-.||+.++++..||.-|
T Consensus 9 ~k~~~el~~v~~n~~lL~EM 28 (103)
T 1wrd_A 9 GKLRSELEMVSGNVRVMSEM 28 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999988876
No 238
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=31.65 E-value=23 Score=20.83 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=13.4
Q ss_pred eeeccCCCCCCcCccccHHHHhhh
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
.|.|+.|... +..-..|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTRA---FARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCCB---CSSHHHHHHHH
T ss_pred CeECCCCCcc---cCCHHHHHHHH
Confidence 5899999733 33445566664
No 239
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=31.47 E-value=56 Score=31.04 Aligned_cols=54 Identities=20% Similarity=0.057 Sum_probs=34.7
Q ss_pred eEEEEeccccccCCccccCChhhHh----h-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLK----R-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~----~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
++.|-|++... +...|+ + |+.|.++....+....-+.|++.|.|.+.-. -..|+
T Consensus 11 ~l~V~nlp~~~--------~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~-a~~A~ 69 (282)
T 3pgw_A 11 TIYINNLNEKI--------KKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS-ATNAL 69 (282)
T ss_pred EEEEeCCCCCC--------CHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHH-HHHHH
Confidence 45688987633 455655 7 8889876554444444577999999976433 34444
No 240
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=31.45 E-value=4.6e+02 Score=27.18 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=14.1
Q ss_pred HHhHHHhhhhhHHHHHHHhhhhhHHHH
Q 008696 258 LASKIDMKNEDLSELQCKFNETTMSLS 284 (557)
Q Consensus 258 L~n~i~~kn~~l~elE~k~~e~t~sL~ 284 (557)
+..+...+.++...|-..|+.++.-++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 157 (373)
T 3hhm_B 131 YNTQFQEKSREYDRLYEEYTRTSQEIQ 157 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHhccchHHHH
Confidence 344445555555566555555554443
No 241
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=31.26 E-value=13 Score=31.35 Aligned_cols=13 Identities=31% Similarity=1.068 Sum_probs=10.7
Q ss_pred cCCeeeccCCCCC
Q 008696 36 VNGTLRCPFCSGK 48 (557)
Q Consensus 36 ~~~~~~CP~C~gk 48 (557)
.+.+|.||||...
T Consensus 20 L~t~F~CPfCnh~ 32 (85)
T 1wii_A 20 LETQFTCPFCNHE 32 (85)
T ss_dssp CSSCCCCTTTCCS
T ss_pred CCCeEcCCCCCCC
Confidence 6689999999754
No 242
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.20 E-value=2.7e+02 Score=25.00 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=4.8
Q ss_pred HHHHHHhhhH
Q 008696 325 ELETKKKKLD 334 (557)
Q Consensus 325 eLe~k~~eL~ 334 (557)
.|+.+|++|-
T Consensus 36 ~vd~km~ei~ 45 (138)
T 3hnw_A 36 YINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3444555544
No 243
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.09 E-value=22 Score=21.02 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=14.0
Q ss_pred eeeccCCCCCCcCccccHHHHhhh
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
.|.|+.|... ...-..|..|-
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 1rik_A 2 KFACPECPKR---FMRSDHLTLHI 22 (29)
T ss_dssp CEECSSSSCE---ESCSHHHHHHH
T ss_pred CccCCCCCch---hCCHHHHHHHH
Confidence 5899999733 33455677774
No 244
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.77 E-value=24 Score=22.00 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=15.6
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
...|.|+.|... +.....|..|-.
T Consensus 5 ~k~~~C~~C~k~---f~~~~~L~~H~~ 28 (35)
T 2elx_A 5 SSGYVCALCLKK---FVSSIRLRSHIR 28 (35)
T ss_dssp CCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCeECCCCcch---hCCHHHHHHHHH
Confidence 457999999733 334456667743
No 245
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=30.60 E-value=48 Score=31.59 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=38.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC---CceeeeeccC-CC-CcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK---PVEVRIFWNE-EN-PTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~---p~kv~~l~~~-~G-h~G~aIv~F~~dw~Gf~~A~~ 185 (557)
..+.|-|++.. .+...|++ |+.|. ...|+.+.+. .| ..||+.|.|.+.-. -..|+.
T Consensus 69 ~~lfVgnL~~~--------~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 69 IALYIGNLTWW--------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp CEEEEESCCTT--------CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred cEEEEeCCCCC--------CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 35678888753 36678999 99998 4566666664 33 57999999987643 344544
No 246
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.15 E-value=58 Score=27.50 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCCCcHHHHHHHHHHH
Q 008696 392 EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMN 446 (557)
Q Consensus 392 Eke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~~d~~~~~k~~~l~ 446 (557)
+++.+..+|..|+.|.+ +|+.+|+++..+|. +.+....+++-|..|+
T Consensus 2 ~~~~L~~~i~~L~~q~~---~L~~ei~~~~a~L~-----~~~~~~~~~~hI~~Lh 48 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKE---QLESSLQDALAKLK-----NRDAKQTVQKHIDLLH 48 (85)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCS-----SSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHH
Confidence 45678888888887765 78889999988874 2222233445455555
No 247
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.14 E-value=25 Score=20.74 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=15.3
Q ss_pred CeeeccCCCCCCcCccccHHHHhhhc
Q 008696 38 GTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 38 ~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
..|.|+.|... +.....|..|-.
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGKR---FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCCE---ESCHHHHHHHHT
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 46899999733 344566777753
No 248
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=30.10 E-value=1.4e+02 Score=27.49 Aligned_cols=96 Identities=23% Similarity=0.210 Sum_probs=55.1
Q ss_pred HHhhHHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008696 320 EKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSK 399 (557)
Q Consensus 320 ekl~~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~k 399 (557)
+++..+|.+....+|.-+.+|+- +-+++..|.++... +.+.-...+| -.++..-+ ..|+...+.+
T Consensus 28 e~l~~~l~~~i~q~d~elqQLef-------q~kr~~~e~~~q~~--~~~~p~~~~q---i~~iq~q~---~~ek~~r~e~ 92 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQ-------EGQTVVDQVRRQSA--NPLDPRVQEQ---VANIQQQV---AGKRSELEEQ 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTS--CTTCHHHHHH---HHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccC--CCCChhHHHH---HHHHHHHH---HHHHHHHHHH
Confidence 45566777777777777777764 33333334333110 1111000000 01111112 3677778889
Q ss_pred HHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 400 ILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 400 i~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
+-+|..||.+-+.|+|.-+=..|+++-+=-+
T Consensus 93 k~~l~~ql~qv~~L~lGsEv~qg~vE~~v~V 123 (150)
T 4dci_A 93 KRNLLQQQAQVRELEMDQIVEQGQLESSCEI 123 (150)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEEECCEE
T ss_pred HHHHHHHHHHHhcCCCcCEEeeceeeEEEEE
Confidence 9999999999999999877777777654444
No 249
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=36.23 E-value=11 Score=31.52 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=35.3
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce---------eeeeccCC--CCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE---------VRIFWNEE--NPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k---------v~~l~~~~--Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
.+.|-|+|... +...|++ |+.|.++. +....++. -..|+|.|.|.+.-.- ..|+.
T Consensus 9 ~l~V~nLp~~~--------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A-~~Ai~ 75 (116)
T 2lcw_A 9 TIFVQGLGENV--------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAID 75 (116)
Confidence 34577887533 4556788 99998776 45555532 3679999999875433 33443
No 250
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=30.02 E-value=25 Score=20.74 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=14.6
Q ss_pred eeeccCCCCCCcCccccHHHHhhhc
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
.|.|+.|... +.....|..|-.
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFR---SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCC---CSCSHHHHHHHH
T ss_pred CccCCCCCCc---cCCHHHHHHHHH
Confidence 5899999633 344566777753
No 251
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=29.96 E-value=50 Score=29.55 Aligned_cols=46 Identities=20% Similarity=0.031 Sum_probs=30.4
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC-CceeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK-PVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~-p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
.++.|-|+|. ..+...|++ |+.|. ++.-..+.. ...|++.|.|.+.
T Consensus 121 ~~l~v~nl~~--------~~~~~~l~~~f~~~G~~v~~v~i~~--~~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPP--------SVSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCT--------TCCHHHHHHHHHHTTSCCCEEEESS--TTSSCEEEECSSH
T ss_pred cEEEEeCCCC--------CCCHHHHHHHHHHcCCCceEEEEEe--CCCcEEEEEeCCH
Confidence 4566778865 336678899 99886 443333322 2378999999763
No 252
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=29.86 E-value=3.9e+02 Score=28.95 Aligned_cols=110 Identities=16% Similarity=0.256 Sum_probs=67.6
Q ss_pred ccCCCCCC---Cc--hhhhhhhccCCC-CHHHHHHHhh------hhHhHHHHHHHhHHHhhhhhHHHHHHHhhhhhHHHH
Q 008696 217 RADDNTSE---GP--IGEYLRQEGKLR-TVSDIVQEDA------QSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLS 284 (557)
Q Consensus 217 radD~~~~---~~--iG~~Lrk~gdLK-Ti~ei~~E~~------rk~~~lv~~L~n~i~~kn~~l~elE~k~~e~t~sL~ 284 (557)
.-+|+... || .|--++..-+++ +|.+|-+.-. ....+.+.++.+.+....+..+..+-.|++.+.-|+
T Consensus 38 aDeDwGvkCPSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 38 VDDDWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp CTTSTTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 55666543 32 344443333333 4555543222 366888899999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 008696 285 RMLEE-KDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKK 331 (557)
Q Consensus 285 r~meE-k~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~k~~ 331 (557)
+-.+. ++++.... .-|+-+|..-++..-+| ++|-..+..+++
T Consensus 118 ~ri~yIK~kVd~qi-~~IrvLq~~l~~q~skI----QRLE~dI~~q~~ 160 (491)
T 1m1j_A 118 RRIVTLKQRVATQV-NRIKALQNSIQEQVVEM----KRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 87766 33333333 55555555444433333 555555655554
No 253
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=29.69 E-value=37 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=21.4
Q ss_pred cccCCc-eeeeeccCCC-CcceEEEEeCCChhc
Q 008696 149 AVFKPV-EVRIFWNEEN-PTAQAVVKFNNDWNG 179 (557)
Q Consensus 149 ~~F~p~-kv~~l~~~~G-h~G~aIv~F~~dw~G 179 (557)
+.|.++ .|....+..| ..|++.|.|.+.-..
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 889865 4444445444 489999999876554
No 254
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.61 E-value=2.3e+02 Score=29.30 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh--hhhhHHHhhhhHHHHhhcCCCCcHHHH--HHHHHHHHHHHh
Q 008696 376 KKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK--LEMEIEDLKGKLEVMKHLGDEDDAAVQ--KKMKEMNDELES 451 (557)
Q Consensus 376 ~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~--LELEi~qLkg~L~Vmkhm~~~~d~~~~--~k~~~l~~~L~e 451 (557)
..+.+.+-+++++-+.++ ++.+.-..|++||+.-|+ +.+|-|--.-.+-||-.|.+=|-.-.. ++|.+|.-++.+
T Consensus 376 ~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (471)
T 3mq9_A 376 KDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhHHHHHhHHHH
Q 008696 452 KIDDLDEMESLNKTL 466 (557)
Q Consensus 452 k~~el~~~e~~nq~L 466 (557)
...+|++.++-...|
T Consensus 455 ~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 455 LNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
No 255
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=29.55 E-value=48 Score=29.64 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=34.2
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
++.|-|+|.. ..+...|++ |+.|.++. ++...+. .|+|.|.|.+.-. -..|+.
T Consensus 5 ~l~v~nlp~~-------~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~-a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNPE-------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQ-AQLAMS 59 (198)
T ss_dssp EEEEECCCSS-------SCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHH-HHHHHH
T ss_pred EEEEeCCCcc-------cCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHH-HHHHHH
Confidence 4667888751 235678899 99998644 4444433 7899999986433 344544
No 256
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.45 E-value=24 Score=20.60 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=12.9
Q ss_pred eeeccCCCCCCcCccccHHHHhhh
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
.|.||.|... +.....|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK---FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC---CCTTTHHHHHH
T ss_pred CCcCCCCCcc---cCCHHHHHHHH
Confidence 5889999743 22344566663
No 257
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=29.08 E-value=60 Score=27.39 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=5.5
Q ss_pred cHHHHhhhccC
Q 008696 55 HKDLLQHASGV 65 (557)
Q Consensus 55 ~~~LLqHA~gv 65 (557)
.=+|+++-.|.
T Consensus 70 ~i~fv~~~~~~ 80 (103)
T 1d0q_A 70 AFTFLMDIEGI 80 (103)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 33455555553
No 258
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.89 E-value=27 Score=21.88 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
...|.|+.|... +.....|..|-.
T Consensus 5 ~k~~~C~~C~k~---f~~~~~l~~H~~ 28 (35)
T 1srk_A 5 KRPFVCRICLSA---FTTKANCARHLK 28 (35)
T ss_dssp CSCEECSSSCCE---ESSHHHHHHHHG
T ss_pred CcCeeCCCCCcc---cCCHHHHHHHHH
Confidence 457999999633 334566777754
No 259
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.78 E-value=27 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=14.2
Q ss_pred eeeccCCCCCCcCccccHHHHhh
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQH 61 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqH 61 (557)
.|.|+.|+.. +.....|..|
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRA---FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCB---CSSSHHHHHH
T ss_pred CcCCcccCcc---cCChHHHHHH
Confidence 5899999733 3455678888
No 260
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=28.75 E-value=52 Score=30.65 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=33.6
Q ss_pred eEEEEeccc-cccCCccccCChhhHhh-hcccCCcee-eeeccCCCCcceEEEEeCCChhchhhHH
Q 008696 122 MGIIVNIVM-ETKDRGSFLDSGYWLKR-FAVFKPVEV-RIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 122 mgIi~Ni~~-e~~dg~~~G~s~~~L~~-~~~F~p~kv-~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
++.|-|+|. .. +...|++ |+.|.++.- +...+. .|+|.|.|.+-- .-..|+
T Consensus 36 ~l~V~nLp~~~~--------te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~-~A~~Ai 89 (229)
T 2adc_A 36 VLLVSNLNPERV--------TPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGN-QAQLAM 89 (229)
T ss_dssp EEEEESCCTTTC--------CHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHH-HHHHHH
T ss_pred EEEEeCCCcccC--------CHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHH-HHHHHH
Confidence 466889875 33 5678899 999987543 333333 789999998633 334444
No 261
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.64 E-value=26 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=15.6
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
...|.|+.|... +.....|..|-.
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elq_A 7 GKPFKCSLCEYA---TRSKSNLKAHMN 30 (36)
T ss_dssp CCSEECSSSSCE---ESCHHHHHHHHH
T ss_pred CCCccCCCCCch---hCCHHHHHHHHH
Confidence 457999999733 334456667743
No 262
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=28.32 E-value=41 Score=36.25 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=27.6
Q ss_pred CChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCCh
Q 008696 140 DSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 140 ~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw 177 (557)
-|-.+|.+ |+.|.|+.-.+.|-..| -||||+|.+.-
T Consensus 64 ~~~~~l~~y~~~~g~i~~~~~~~~~g--~~~~vef~~~~ 100 (464)
T 3pq1_A 64 ISENKFLKYLSQFGPINNHFFYESFG--LYAVVEFCQKE 100 (464)
T ss_dssp ---CHHHHHHGGGSCCCCEEEECSSS--EEEEEECC---
T ss_pred CCHHHHHHHHHhcCCcceEEEEccCC--eEEEEEeCCHH
Confidence 36778889 99999999999998888 59999999853
No 263
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.13 E-value=1.2e+02 Score=31.85 Aligned_cols=56 Identities=23% Similarity=0.485 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCccccc--------ccccC
Q 008696 433 EDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIG--------VKRLG 504 (557)
Q Consensus 433 ~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~~~Ig--------iKrmG 504 (557)
++-++++..+..|.+++.+.++++. ++++....++..+..++...+.+| |++-|
T Consensus 68 ~~~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vp~g~~e~~n~~~~~~g 129 (425)
T 2dq3_A 68 KDTTEIQNRVKELKEEIDRLEEELR------------------KVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWG 129 (425)
T ss_dssp SCTTTSTTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCCCCCCCCCccCcEEEEEeC
Confidence 3445677778888888877777764 455566667777887765555555 89999
Q ss_pred CC
Q 008696 505 EI 506 (557)
Q Consensus 505 el 506 (557)
+-
T Consensus 130 ~~ 131 (425)
T 2dq3_A 130 EP 131 (425)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 264
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=28.02 E-value=42 Score=29.73 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=44.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hc---ccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHHHhhhhhcCC
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FA---VFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQ 195 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~---~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~fek~Fe~~~~ 195 (557)
|||..|+.+.+...+..-...-+..|.. +. ||-... .+.++.| . ...|-|=.|-.-|..-.+-..|-+++..
T Consensus 11 ~pm~aViFe~~~~~~~~~Y~~la~~~~~la~~qpGFI~~E--s~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~~ 86 (122)
T 2go8_A 11 PPYYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVE--SVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKEK 86 (122)
T ss_dssp SCEEEEEEEEECC------CHHHHHHHHHHHHSTTEEEEE--EEECTTS-E-EEEEEEESCHHHHHHHHHHC--------
T ss_pred CCEEEEEEEEEeCCchhHHHHHHHHHHHHHhhCCCceEEE--EEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHHh
Confidence 6777776655533221112333455555 22 465555 5666766 3 4566777788889999999999999999
Q ss_pred Chhhhhhh-cCC--CCCceeeeecccCCCC
Q 008696 196 GKRHWIAR-KES--PGLRIYGWFARADDNT 222 (557)
Q Consensus 196 GRkdW~~~-~~~--~~~~LYGW~AradD~~ 222 (557)
||..|... +.. .--.=||+-.+..|+.
T Consensus 87 Gr~~w~~~y~~rv~~V~r~y~~~~~~~~~~ 116 (122)
T 2go8_A 87 GRSVWYESYAVRVAKVDRQRLFQENTNDLE 116 (122)
T ss_dssp -----CCEEEEEEEEECCCCCCCC------
T ss_pred HHHHHhccCcEEEEEEEEEecCCCCCcchh
Confidence 99999864 111 1224466655555553
No 265
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.95 E-value=66 Score=27.06 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=31.5
Q ss_pred cceEEEEeccc-cccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCCh
Q 008696 120 PWMGIIVNIVM-ETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDW 177 (557)
Q Consensus 120 PwmgIi~Ni~~-e~~dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~Gh~G~aIv~F~~dw 177 (557)
.+++-|-|+|. .. +...|++ |+.|.++. |..+.+ .|+|.|+|...-
T Consensus 15 ~~~l~V~nLp~~~~--------te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~ 63 (102)
T 1x4d_A 15 RRVVHIMDFQRGKN--------LRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTE 63 (102)
T ss_dssp CCEEEEESCCCSSS--------HHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHH
T ss_pred CCEEEEeCCCCCcC--------CHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHH
Confidence 34566889975 32 5567888 99998644 444432 379999998754
No 266
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=27.29 E-value=53 Score=30.49 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=32.8
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhc
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNG 179 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~G 179 (557)
+.|-|++.. .+...|.+ |+.|.++.-..++.. ...|++.|+|.+.-..
T Consensus 49 l~VgNL~~~--------vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A 97 (164)
T 1sjr_A 49 IIVENLFYP--------VTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSA 97 (164)
T ss_dssp EEECSCCSC--------CCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHH
T ss_pred EEEeCcCCC--------CCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHH
Confidence 457787642 35677899 999997655555433 3568999999765443
No 267
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.26 E-value=21 Score=21.27 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=14.3
Q ss_pred CeeeccCCCCCCcCccccHHHHhhh
Q 008696 38 GTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 38 ~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
..|.|+.|... +..-..|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRAG---CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTEE---ESCHHHHHHHH
T ss_pred cCcCCCCCCcc---cCCHHHHHHHH
Confidence 46899999632 33445677774
No 268
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.12 E-value=76 Score=27.27 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=33.2
Q ss_pred cceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 008696 120 PWMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 120 PwmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
..++.|-|+|.. +.+...|++ |+.|.++.-..+-- ..|+|.|+|...-.
T Consensus 25 ~~~l~V~NLp~~-------~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~ 74 (112)
T 1x4f_A 25 GRVIHLSNLPHS-------GYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETRED 74 (112)
T ss_dssp CCEEEEESCCCS-------SCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHH
T ss_pred CCEEEEeCCCCc-------cCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHH
Confidence 456778898752 246678999 99998644333321 36899999987543
No 269
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.04 E-value=2.9e+02 Score=23.49 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCCC
Q 008696 391 REKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDE 433 (557)
Q Consensus 391 rEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~~ 433 (557)
+-+..+..||.+|++++...+.=---+..|.+-..-=-+|++.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~ 57 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDP 57 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCH
Confidence 4567789999999998877666555555555555544556643
No 270
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.92 E-value=3e+02 Score=23.68 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 008696 337 SKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK 412 (557)
Q Consensus 337 ~k~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 412 (557)
..+|...+.+=-.-|+||....+.-......++..++.+..+. -..+.+||-+|.++|.....
T Consensus 11 q~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~-------------V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 11 QDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAA-------------VSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455678888777766667788888888775443 34567899999999987665
No 271
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=26.77 E-value=59 Score=30.92 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=33.8
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHH
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQAS 184 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~ 184 (557)
++.|-|+|.. .+...|++ |+.|....+.. ..+.|+|.|.|.+.-. -..|+
T Consensus 24 ~l~V~nLp~~--------~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~-A~~A~ 74 (284)
T 3smz_A 24 KILIRGLPGD--------VTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQ-AEAAI 74 (284)
T ss_dssp EEEEECCCTT--------CCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHH-HHHHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHH-HHHHH
Confidence 5778899863 36778899 99997333333 3467899999976443 33444
No 272
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.73 E-value=32 Score=21.77 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=16.0
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
...|.|+.|... +.....|..|-.
T Consensus 7 ~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elv_A 7 GLLYDCHICERK---FKNELDRDRHML 30 (36)
T ss_dssp CCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCeECCCCCCc---cCCHHHHHHHHH
Confidence 457999999733 334556777754
No 273
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=26.54 E-value=53 Score=27.59 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHhhccHHHHHHHH
Q 008696 459 MESLNKTLIAKERQSNDELQEARR 482 (557)
Q Consensus 459 ~e~~nq~Li~ker~sndELqeARk 482 (557)
.+.|.|+|. +|||+|+.
T Consensus 34 KQ~~i~~Lt-------~eLq~A~~ 50 (90)
T 4b6x_A 34 KQLMVNNLT-------DELQDAID 50 (90)
T ss_dssp HHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHH
Confidence 345555555 56666655
No 274
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=26.39 E-value=1.6e+02 Score=26.59 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=34.4
Q ss_pred hhhHHHhhhhHHHHhhc-----CCCCcH--------HHHHHHHHHHHHHHhHHhhhHHHH-HhHHHHHHHHhhccHHHHH
Q 008696 414 EMEIEDLKGKLEVMKHL-----GDEDDA--------AVQKKMKEMNDELESKIDDLDEME-SLNKTLIAKERQSNDELQE 479 (557)
Q Consensus 414 ELEi~qLkg~L~Vmkhm-----~~~~d~--------~~~~k~~~l~~~L~ek~~el~~~e-~~nq~Li~ker~sndELqe 479 (557)
-.++..++++..||.-| +++... ++...+..++-.+..-.++..+-+ .+.+.|- .||+|+.
T Consensus 50 ~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp~i~~li~e~~ddee~l~elL~-----~ND~ln~ 124 (140)
T 1o3x_A 50 VNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQ-----ANDNLTQ 124 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH-----hhHHHHH
Confidence 33666788888887776 333322 244445556666666665543332 4444444 3777665
Q ss_pred H
Q 008696 480 A 480 (557)
Q Consensus 480 A 480 (557)
+
T Consensus 125 v 125 (140)
T 1o3x_A 125 V 125 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 275
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=26.08 E-value=8.2e+02 Score=28.39 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=13.2
Q ss_pred HHhhhhhhHHHhhhhHHHHhh
Q 008696 409 AKQKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 409 ~kQ~LELEi~qLkg~L~Vmkh 429 (557)
+++.+||.-.+-+-.|++.|.
T Consensus 764 ~~~~~el~~~~~~~ele~~k~ 784 (861)
T 2zuo_A 764 KVREMELIYARAQLELEVSKA 784 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 566666666666666666554
No 276
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.03 E-value=94 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=25.7
Q ss_pred CChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCC
Q 008696 140 DSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 140 ~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
.+...|++ |+.|.++.-..+- -..|+|.|.|.+.
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~ 59 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKM 59 (97)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSH
T ss_pred CCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCH
Confidence 36788999 9999886555552 4678999999863
No 277
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=25.91 E-value=84 Score=29.18 Aligned_cols=46 Identities=20% Similarity=0.048 Sum_probs=31.2
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccC-CceeeeeccCCCCcceEEEEeCCC
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFK-PVEVRIFWNEENPTAQAVVKFNND 176 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~-p~kv~~l~~~~Gh~G~aIv~F~~d 176 (557)
.++.|-|+|.. .+...|++ |+.|. ++.-..+.. ...|++.|.|.+.
T Consensus 152 ~~l~V~nlp~~--------~t~~~l~~~f~~~G~~i~~v~i~~--~~~g~afV~f~~~ 199 (229)
T 2adc_A 152 ATLHLSNIPPS--------VSEEDLKVLFSSNGGVVKGFKFFQ--KDRKMALIQMGSV 199 (229)
T ss_dssp SEEEEECCCTT--------CCHHHHHHHHHTTSCCEEEEEECS--SSTTCEEEEESSH
T ss_pred CEEEEeCCCcc--------CCHHHHHHHHHHcCCCeeEEEEEE--CCCcEEEEEECCH
Confidence 67788898753 35678899 99997 443333321 2368999999773
No 278
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.53 E-value=3.4e+02 Score=23.77 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhH
Q 008696 392 EKEEALSKILQLEKQLDAKQKLEMEI 417 (557)
Q Consensus 392 Eke~~~~ki~~LekqL~~kQ~LELEi 417 (557)
--..+..+..-||-+|+.|..|.-++
T Consensus 85 k~n~aiErnalLE~El~EKe~L~~~~ 110 (111)
T 2v66_B 85 RLNQAIERNAFLESELDEKESLLVSV 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777899999888887654
No 279
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=25.51 E-value=18 Score=30.87 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=10.1
Q ss_pred CeeeccCCCCCCc
Q 008696 38 GTLRCPFCSGKKK 50 (557)
Q Consensus 38 ~~~~CP~C~gkkk 50 (557)
.++|||.|++-.-
T Consensus 22 ~~LRCpvCqnqsI 34 (90)
T 2kw0_A 22 EELRCPKCQNNSI 34 (90)
T ss_dssp HSSBCSCTTSCTT
T ss_pred HcCcCCCCCCCch
Confidence 3599999997654
No 280
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=25.48 E-value=29 Score=27.14 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.8
Q ss_pred Eee-cCCeeeccCCCC
Q 008696 33 KVR-VNGTLRCPFCSG 47 (557)
Q Consensus 33 kVk-~~~~~~CP~C~g 47 (557)
.|- ..++|.||||..
T Consensus 26 ~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 26 QVDYRAKLWACNFCYQ 41 (59)
T ss_dssp EEEGGGTEEECSSSCC
T ss_pred EEECCCCEEEcccCCC
Confidence 556 567999999973
No 281
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=25.21 E-value=19 Score=30.26 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=10.2
Q ss_pred CeeeccCCCCCCc
Q 008696 38 GTLRCPFCSGKKK 50 (557)
Q Consensus 38 ~~~~CP~C~gkkk 50 (557)
.++|||.|++-.=
T Consensus 25 ~~LRCp~Cqnqsi 37 (84)
T 2hl7_A 25 QELRCPKCQNQDI 37 (84)
T ss_dssp HHEECTTSSSCBT
T ss_pred HcCcCCCCCCCch
Confidence 4599999997644
No 282
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.21 E-value=2e+02 Score=24.19 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 380 ENVLRLVEEQKR--------EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 380 e~vlkLve~hkr--------Eke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
++.-+.+.++.| |.+.+|..|.+|+.++ ..|.-+.++|+..-++.+||
T Consensus 27 e~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi---~~lk~en~eL~elae~~q~m 82 (83)
T 1uii_A 27 SQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEI---ARLKKENKELAEVAEHVQYM 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
No 283
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.68 E-value=35 Score=19.74 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=13.8
Q ss_pred eeeccCCCCCCcCccccHHHHhhhc
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
.|.|+.|... +.....|..|-.
T Consensus 1 ~~~C~~C~k~---f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCERS---FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCCB---CSSHHHHHHHGG
T ss_pred CccCCCCCCc---CCCHHHHHHHHH
Confidence 3789999733 334556777753
No 284
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.67 E-value=27 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=15.9
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +..-..|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (37)
T 2elo_A 6 SGRSYSCPVCEKS---FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCCEETTTTEE---CSSHHHHHHHHH
T ss_pred CCCCcCCCCCCCc---cCCHHHHHHHHH
Confidence 3567999999733 334455666743
No 285
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=24.66 E-value=85 Score=28.81 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=34.2
Q ss_pred eEEEEeccccccCCccccCChhhHhh-hcccCCc-eeeeeccC--CCCcceEEEEeCCCh
Q 008696 122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPV-EVRIFWNE--ENPTAQAVVKFNNDW 177 (557)
Q Consensus 122 mgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~-kv~~l~~~--~Gh~G~aIv~F~~dw 177 (557)
++.|-|+|.. .+...|++ |+.|.++ .|+...+. .-+.|++.|.|.+..
T Consensus 17 tlfVgnLp~~--------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 17 SLYVGDLHPD--------VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp EEEEESCCTT--------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EEEEeCCCCC--------CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHH
Confidence 4567899763 36678899 9999875 45555443 346899999998643
No 286
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.55 E-value=34 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=16.0
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.|+.|+.. +.....|..|-
T Consensus 8 ~~k~~~C~~C~k~---f~~~~~L~~H~ 31 (42)
T 2en2_A 8 GEKPYKCETCGAR---FVQVAHLRAHV 31 (42)
T ss_dssp SSCSEECTTTCCE---ESSHHHHHHHT
T ss_pred CCCCEeCCCcChh---hCCHHHHHHHH
Confidence 4568999999733 33455666674
No 287
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.47 E-value=1.2e+02 Score=21.75 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=15.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhH
Q 008696 314 RILEEQEKLSCELETKKKKLD 334 (557)
Q Consensus 314 ri~~e~ekl~~eLe~k~~eL~ 334 (557)
.++.+|+||..+|+.|-.++-
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa 24 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIA 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467899999998887755543
No 288
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=24.35 E-value=2.3e+02 Score=24.42 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=35.0
Q ss_pred hhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhc
Q 008696 420 LKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLI 492 (557)
Q Consensus 420 Lkg~L~Vmkhm~~~~d~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~ 492 (557)
++..++-..+.|.+-+++..+++.++..+|.. ......+.-.|..-+.=|++.-+.+..++.++.
T Consensus 51 ~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~--------n~~v~~~~~Ae~~l~~ll~~I~~iI~~~i~~~~ 115 (122)
T 2oeq_A 51 IQLRLHEKQMRGAAILPDEIEQAQKAMALAQQ--------NEKLARLMALEQQMSITIAEVQQIAMKPLEELH 115 (122)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTT--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444456677777776666532 233444444555555556666666655555543
No 289
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.28 E-value=1.8e+02 Score=31.56 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhccHHHHHHHHHHHHhhhhhcCCccc-------ccccccCCC
Q 008696 436 AAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTN-------IGVKRLGEI 506 (557)
Q Consensus 436 ~~~~~k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sndELqeARkelI~gl~~~~~~~~~-------IgiKrmGel 506 (557)
++++..+.+|.++|.+.++++. ++++....++..|..++...+. .=|++-|+.
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~------------------~~~~~l~~~l~~iPN~~~~~vP~g~e~~n~~v~~~g~~ 178 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEA------------------QLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDK 178 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTCCCSSGGGCEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCCCCCCCCCCCCeEEEEeCCC
Confidence 4666777777777777666663 4555555666777776543332 238888974
No 290
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.98 E-value=38 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 7 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (41)
T 2ept_A 7 GQRVYECQECGKS---FRQKGSLTLHER 31 (41)
T ss_dssp CCCCEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCCCeECCCCCCC---cCCHHHHHHHHH
Confidence 3567999999733 334566777854
No 291
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.93 E-value=2.1e+02 Score=27.39 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=14.9
Q ss_pred CCCHHHHHHHhhhhHhHHHHHHHhHHHhhhhhHHH
Q 008696 237 LRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSE 271 (557)
Q Consensus 237 LKTi~ei~~E~~rk~~~lv~~L~n~i~~kn~~l~e 271 (557)
|-.|...+++..+..+.+|+.|.+++...++.|+.
T Consensus 4 ~~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~ 38 (190)
T 4emc_A 4 LTVYKNSVKQQIDSADLLVANLVNENFVLSEKLDT 38 (190)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999977777666653
No 292
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.65 E-value=1.5e+02 Score=28.80 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhc
Q 008696 392 EKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 392 Eke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm 430 (557)
|.+.||..|.+|+.++. .|.-|+++|+...++.+||
T Consensus 116 EN~~Lh~~ie~l~eEi~---~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIA---RLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 44444444444443332 5677777777777777776
No 293
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.11 E-value=39 Score=22.70 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=16.6
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emi_A 9 GERHYECSECGKA---FIQKSTLSMHQR 33 (46)
T ss_dssp SCCCEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCCCCCCCCCCcc---cCCHHHHHHHHh
Confidence 4568999999733 334556777743
No 294
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=23.06 E-value=3.9e+02 Score=23.51 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhHHhhhHHHHHhHHHHHHHHhhcc
Q 008696 441 KMKEMNDELESKIDDLDEMESLNKTLIAKERQSN 474 (557)
Q Consensus 441 k~~~l~~~L~ek~~el~~~e~~nq~Li~ker~sn 474 (557)
.+..+...|.+...+...++..|..||......|
T Consensus 89 ~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~ 122 (154)
T 3opc_A 89 ELGPLWQALQANAAQAREHNQRNGTLIAVNLRHT 122 (154)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999996544443
No 295
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.92 E-value=98 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=29.7
Q ss_pred EEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcce-EEEEeCCChh
Q 008696 124 IIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQ-AVVKFNNDWN 178 (557)
Q Consensus 124 Ii~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~-aIv~F~~dw~ 178 (557)
.|-|++.. .+...|.. |+.|.++.-..+... +|+ |.|+|...-.
T Consensus 29 ~V~NL~~~--------vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~ 74 (124)
T 2e5i_A 29 SIQNPLYP--------ITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLC 74 (124)
T ss_dssp EEESCCSC--------CCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHH
T ss_pred EEcCcCCC--------CCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHH
Confidence 36787642 25567888 999998665445443 486 9999976543
No 296
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.92 E-value=41 Score=22.10 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=17.1
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 8 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2eos_A 8 GEKPYPCEICGTR---FRHLQTLKSHLR 32 (42)
T ss_dssp SSCCBCCSSSCCC---BSSHHHHHHHTT
T ss_pred CCCCEECCCCCCc---cCCHHHHHHHHH
Confidence 4567999999743 344566777854
No 297
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=41 Score=22.38 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|..
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2yu5_A 9 GENPFKCSKCDRV---FTQRNYLVQHER 33 (44)
T ss_dssp CCCSEECSSSSCE---ESSSHHHHHHHH
T ss_pred CCCCeECCCCCch---hCCHHHHHHHhH
Confidence 4568999999733 344566777754
No 298
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.78 E-value=40 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=17.1
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 8 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2ytb_A 8 GEKPYRCDQCGKA---FSQKGSLIVHIR 32 (42)
T ss_dssp SCCSBCCTTTTCC---BSSHHHHHTTGG
T ss_pred CCCCeeCCCccch---hCCHHHHHHHHH
Confidence 4567999999733 344566777854
No 299
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.73 E-value=40 Score=22.64 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq1_A 9 GEKPYKCNECGKA---FRAHSNLTTHQV 33 (46)
T ss_dssp CSCCCCCTTTTCC---CSSHHHHHHHHT
T ss_pred CCCCeECCcCChh---hCCHHHHHHHHH
Confidence 4568999999733 344566777854
No 300
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.61 E-value=42 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=17.1
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enf_A 9 GEKPYKCNECGKV---FTQNSHLVRHRG 33 (46)
T ss_dssp CCCSCBCSSSCCB---CSSHHHHHHHHT
T ss_pred CCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 4668999999733 344566777753
No 301
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=22.57 E-value=68 Score=27.62 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=48.1
Q ss_pred eEEEEecccccc-CCccccCChhhHhh-hcccCCce-eeeeccCCC------CcceEEEEeCCChhchhhHHHHHhhhhh
Q 008696 122 MGIIVNIVMETK-DRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEEN------PTAQAVVKFNNDWNGFMQASDFEKAFDA 192 (557)
Q Consensus 122 mgIi~Ni~~e~~-dg~~~G~s~~~L~~-~~~F~p~k-v~~l~~~~G------h~G~aIv~F~~dw~Gf~~A~~fek~Fe~ 192 (557)
+++|.|+.+..+ +.. -...|++ |+.|.++. |+..-+..+ ..|++.|.|.+.-. |.+--+.+.
T Consensus 22 vl~L~Nm~~~~el~dd----leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~----A~~Ai~~Ln- 92 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDDD----LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASE----THKAIQALN- 92 (118)
T ss_dssp EEEEESCSCGGGCCTT----HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHH----HHHHHHHHT-
T ss_pred EEEEECCCCHHHHHHH----HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHH----HHHHHHHHC-
Confidence 578999977432 211 2467888 99999765 433333322 24899999987533 332222222
Q ss_pred cCCChhhhhhhcCCCCCceeeeecccCCCCCC
Q 008696 193 DHQGKRHWIARKESPGLRIYGWFARADDNTSE 224 (557)
Q Consensus 193 ~~~GRkdW~~~~~~~~~~LYGW~AradD~~~~ 224 (557)
| | |. . ++.|.--.+..++|...
T Consensus 93 -G--r--~f----~-GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 93 -G--R--WF----A-GRKVVAEVYDQERFDNS 114 (118)
T ss_dssp -T--C--EE----T-TEECEEEEECHHHHHTT
T ss_pred -C--C--EE----C-CcEEEEEEcChHhcccc
Confidence 1 1 11 2 56777777777766543
No 302
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.55 E-value=3.4e+02 Score=22.60 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHhhhhHHHHhhcCC
Q 008696 390 KREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGD 432 (557)
Q Consensus 390 krEke~~~~ki~~LekqL~~kQ~LELEi~qLkg~L~Vmkhm~~ 432 (557)
..+...+..+|..|+.++..-...--|+..|...-.|.+.+|+
T Consensus 19 ~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~ 61 (117)
T 2zqm_A 19 QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGT 61 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhH
Confidence 3455556666666666665554444455555554455555554
No 303
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=22.45 E-value=1.6e+02 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=28.1
Q ss_pred cCChhhHhh-hcccCC-ceeeeeccCCC--CcceEEEEeCC
Q 008696 139 LDSGYWLKR-FAVFKP-VEVRIFWNEEN--PTAQAVVKFNN 175 (557)
Q Consensus 139 G~s~~~L~~-~~~F~p-~kv~~l~~~~G--h~G~aIv~F~~ 175 (557)
..+-..|++ |+.|.+ ..+...+++.. +.|++.|+|..
T Consensus 17 ~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 17 NIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 346788999 999997 56666666643 68999999996
No 304
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.36 E-value=25 Score=26.32 Aligned_cols=12 Identities=33% Similarity=0.786 Sum_probs=9.0
Q ss_pred CeeeccCCCCCC
Q 008696 38 GTLRCPFCSGKK 49 (557)
Q Consensus 38 ~~~~CP~C~gkk 49 (557)
..|+||.|...+
T Consensus 29 ~dw~CP~Cg~~k 40 (46)
T 6rxn_A 29 DDWCCPVCGVSK 40 (46)
T ss_dssp TTCBCTTTCCBG
T ss_pred CCCcCcCCCCcH
Confidence 349999998543
No 305
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.31 E-value=40 Score=22.57 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yts_A 9 GEKPYICNECGKS---FIQKSHLNRHRR 33 (46)
T ss_dssp SCCSEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCcCEECCCCChh---hCChHHHHHHHH
Confidence 4568999999733 345566777754
No 306
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=22.31 E-value=41 Score=22.05 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=16.7
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 7 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (42)
T 2el5_A 7 GENPYECSECGKA---FNRKDQLISHQR 31 (42)
T ss_dssp SCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCCCccCCCcChh---hCCHHHHHHHHH
Confidence 4567999999733 334556777754
No 307
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=22.28 E-value=1.9e+02 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHH
Q 008696 436 AAVQKKMKEMNDELESKIDDLDEMES 461 (557)
Q Consensus 436 ~~~~~k~~~l~~~L~ek~~el~~~e~ 461 (557)
.....-+..|+++|.+|+.+...+++
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e 39 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKE 39 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455889999999999999886654
No 308
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.27 E-value=39 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=15.8
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
...|.|+.|... +.....|..|-.
T Consensus 4 ~k~~~C~~C~k~---f~~~~~L~~H~~ 27 (39)
T 1njq_A 4 PRSYTCSFCKRE---FRSAQALGGHMN 27 (39)
T ss_dssp SSSEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCceECCCCCcc---cCCHHHHHHHHH
Confidence 457999999733 334556777754
No 309
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.23 E-value=41 Score=22.24 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=16.4
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2eof_A 9 GEKPYECNECQKA---FNTKSNLMVHQR 33 (44)
T ss_dssp CCCSEECTTTCCE---ESCHHHHHHHHH
T ss_pred CCCCeECCCCCcc---cCCHhHHHHHHH
Confidence 4567999999733 334556777743
No 310
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.10 E-value=41 Score=21.66 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=14.7
Q ss_pred CCeeeccCCCCCCcCccccHHHHhh
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQH 61 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqH 61 (557)
...|.|+.|... +..-..|..|
T Consensus 7 ~k~~~C~~C~k~---f~~~~~L~~H 28 (37)
T 2elm_A 7 GHLYYCSQCHYS---SITKNCLKRH 28 (37)
T ss_dssp SCEEECSSSSCE---EECHHHHHHH
T ss_pred CcCeECCCCCcc---cCCHHHHHHH
Confidence 567999999733 3344556677
No 311
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.10 E-value=30 Score=26.39 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=10.1
Q ss_pred CCeeeccCCCCCCc
Q 008696 37 NGTLRCPFCSGKKK 50 (557)
Q Consensus 37 ~~~~~CP~C~gkkk 50 (557)
-..|.||.|...|.
T Consensus 34 P~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 34 PDDWACPVCGASKD 47 (52)
T ss_dssp CTTCCCSSSCCCTT
T ss_pred CCCCcCCCCCCcHH
Confidence 34599999986543
No 312
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.03 E-value=3.4e+02 Score=22.49 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=41.3
Q ss_pred HHHHHHhhhHHHHHhhHHHHHhhhhhhchhHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 008696 339 QLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQK 412 (557)
Q Consensus 339 ~L~k~~~~~~~er~kL~~e~~kn~~~~~~l~lA~~Eq~kade~vlkLve~hkrEke~~~~ki~~LekqL~~kQ~ 412 (557)
+|...+-+=-.-|+||....+.-......++..++.+..+. -..+.+||-+|.++|.....
T Consensus 13 e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~-------------V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 13 NITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAA-------------VSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Confidence 33334444445678888777766677788888888775443 34567889999999876554
No 313
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.97 E-value=3.1e+02 Score=23.03 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 008696 311 NVRRILEEQEKLSCELETKKKKLDSWSKQLNKRE 344 (557)
Q Consensus 311 ~~~ri~~e~ekl~~eLe~k~~eL~~r~k~L~k~~ 344 (557)
.....+.+|++|..+++.+..++..-..++..+.
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999998888777666555544443
No 314
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.83 E-value=45 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=15.8
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.|+.|... +.....|..|-
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2en9_A 9 GKKLFKCNECKKT---FTQSSSLTVHQ 32 (46)
T ss_dssp SSCCCBCTTTCCB---CSSHHHHHHHH
T ss_pred CCCCEECCccCcc---cCCHHHHHHHH
Confidence 4568999999733 33445566664
No 315
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.78 E-value=44 Score=22.25 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=15.8
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.|+.|... +.....|..|-
T Consensus 9 ~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (44)
T 2eou_A 9 AKTTSECQECGKI---FRHSSLLIEHQ 32 (44)
T ss_dssp SSCCCCCTTTCCC---CSSHHHHHHHH
T ss_pred CCcCeECCCCCcc---cCCHHHHHHHH
Confidence 5678999999743 33445566664
No 316
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.74 E-value=3.8e+02 Score=22.99 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 008696 282 SLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELET 328 (557)
Q Consensus 282 sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ri~~e~ekl~~eLe~ 328 (557)
...++-.|-+.|--+-=+|-.+|-..|+.....+-.-|++|+.+|..
T Consensus 48 ~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 48 EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444445555555666677777776666666666666666643
No 317
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=21.71 E-value=95 Score=27.52 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=31.1
Q ss_pred EEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcce-EEEEeCCCh
Q 008696 123 GIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQ-AVVKFNNDW 177 (557)
Q Consensus 123 gIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~-aIv~F~~dw 177 (557)
++|-|++.. .+...|.+ |+.|.++.-..+... ..|+ |.|+|.+.-
T Consensus 31 I~V~NL~~~--------vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~ 77 (130)
T 3zzy_A 31 IIVENLFYP--------VTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPV 77 (130)
T ss_dssp EEEESCCSC--------CCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHH
T ss_pred EEECCCCCC--------CCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHH
Confidence 457888542 35677899 999998665555433 2567 999997653
No 318
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.67 E-value=41 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=16.8
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2emb_A 9 TRKRYECSKCQAT---FNLRKHLIQHQK 33 (44)
T ss_dssp CCSSEECTTTCCE---ESCHHHHHHHGG
T ss_pred CCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 4567999999733 334556777754
No 319
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.67 E-value=42 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=17.1
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep3_A 9 GEKPYRCAECGKA---FTDRSNLFTHQK 33 (46)
T ss_dssp CCCSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCeECCCCCch---hCCHHHHHHHHH
Confidence 4567999999733 445566777854
No 320
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.66 E-value=2.1e+02 Score=23.76 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHh----hhhhhHHHhhhhHHHHhhc
Q 008696 387 EEQKREKEEALSKILQLEKQLDAKQ----KLEMEIEDLKGKLEVMKHL 430 (557)
Q Consensus 387 e~hkrEke~~~~ki~~LekqL~~kQ----~LELEi~qLkg~L~Vmkhm 430 (557)
|++..--.+++....+|-+++.+++ .|.-|+.+|+.-++=.+||
T Consensus 23 E~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 23 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443 4666666666555544444
No 321
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.62 E-value=43 Score=22.41 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=15.7
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.|+.|... +.....|..|-
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eow_A 9 GEKPYKCNECGKA---FRARSSLAIHQ 32 (46)
T ss_dssp CCCCEECTTSCCE---ESSHHHHHHHH
T ss_pred CCCCeeccccCCh---hcCHHHHHHHH
Confidence 4668999999733 33445566664
No 322
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=21.59 E-value=91 Score=29.63 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=35.8
Q ss_pred ceEEEEeccccccCCccccCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChhchhhHHH
Q 008696 121 WMGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASD 185 (557)
Q Consensus 121 wmgIi~Ni~~e~~dg~~~G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~Gf~~A~~ 185 (557)
..+.|-|+|.. .+...|++ |+.|.++....+. -..|+|.|.|.+.-. -..|+.
T Consensus 23 ~~l~V~nLp~~--------~te~~l~~~F~~~G~i~~v~i~---~~kg~afV~f~~~~~-A~~A~~ 76 (261)
T 3sde_A 23 CRLFVGNLPTD--------ITEEDFKRLFERYGEPSEVFIN---RDRGFGFIRLESRTL-AEIAKA 76 (261)
T ss_dssp GEEEEESCCTT--------CCHHHHHHHTGGGCCCSEEEEE---TTTTEEEEECSSHHH-HHHHHH
T ss_pred CEEEEECCCCC--------CCHHHHHHHHHhcCCEEEEEEe---CCCcEEEEEECCHHH-HHHHHH
Confidence 45678899763 36788999 9999876554442 236899999986433 333443
No 323
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=21.57 E-value=39 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=11.9
Q ss_pred CCeeeccCCCCCCcCccccHHHHhhh
Q 008696 37 NGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 37 ~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
+..|.||.|... +.....|..|-
T Consensus 2 ~~~~~C~~C~~~---f~~~~~l~~H~ 24 (57)
T 3uk3_C 2 SSSRECSYCGKF---FRSNYYLNIHL 24 (57)
T ss_dssp ---CBCTTTCCB---CSCHHHHHHHH
T ss_pred CCCccCCCCcch---hCChHHHHHHH
Confidence 356889999633 23344555553
No 324
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.28 E-value=42 Score=25.61 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=15.3
Q ss_pred cCCeeeccCCCCCCcCcccc-HHHHhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKH-KDLLQH 61 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~-~~LLqH 61 (557)
..++|.||-|... |++ .+|-.|
T Consensus 9 ~~~~~~CPrCn~~----f~~~~sLr~H 31 (49)
T 2e72_A 9 DGGRKICPRCNAQ----FRVTEALRGH 31 (49)
T ss_dssp CSSCCCCTTTCCC----CSSHHHHHHH
T ss_pred cCCceeCCccccc----ccchHHHHhh
Confidence 3478999999855 764 456555
No 325
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.20 E-value=44 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytf_A 9 GEKPFECSECQKA---FNTKSNLIVHQR 33 (46)
T ss_dssp CCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCcCCCCCCcc---cCCHHHHHHHHH
Confidence 4568999999733 344566777754
No 326
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.11 E-value=2.6e+02 Score=24.77 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=9.9
Q ss_pred hhhhhhHHHhhhhHHHHhh
Q 008696 411 QKLEMEIEDLKGKLEVMKH 429 (557)
Q Consensus 411 Q~LELEi~qLkg~L~Vmkh 429 (557)
-+|+-+|+.|+.+|+.++.
T Consensus 10 ~~L~~~i~~l~~~L~~lkq 28 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAET 28 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 327
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.09 E-value=41 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=14.1
Q ss_pred eeeccCCCCCCcCccccHHHHhh
Q 008696 39 TLRCPFCSGKKKQDYKHKDLLQH 61 (557)
Q Consensus 39 ~~~CP~C~gkkk~~y~~~~LLqH 61 (557)
-|-||.|. + +.-....|..|
T Consensus 5 GFiCP~C~-~--~l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCM-K--SLGSADELFKH 24 (34)
T ss_dssp EEECTTTC-C--EESSHHHHHHH
T ss_pred ccCCcHHH-H--HcCCHHHHHHH
Confidence 39999997 2 34456677777
No 328
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.08 E-value=43 Score=22.12 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=17.0
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2en7_A 9 GMKPYVCNECGKA---FRSKSYLIIHTR 33 (44)
T ss_dssp SSSSSCCTTTCCC---CSSHHHHHHHHT
T ss_pred CCcCeECCCCCCc---cCCHHHHHHHhh
Confidence 4567999999743 344566777754
No 329
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=47 Score=22.45 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=17.3
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eon_A 9 GEKPYKCQVCGKA---FRVSSHLVQHHS 33 (46)
T ss_dssp SCCSCBCSSSCCB---CSSHHHHHHHTT
T ss_pred CCcccCCCCCCcc---cCcHHHHHHHHH
Confidence 4568999999733 345566878854
No 330
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.97 E-value=95 Score=26.87 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=26.3
Q ss_pred cCChhhHhh-hcccCCceeeeeccCCCCcceEEEEeCCChh
Q 008696 139 LDSGYWLKR-FAVFKPVEVRIFWNEENPTAQAVVKFNNDWN 178 (557)
Q Consensus 139 G~s~~~L~~-~~~F~p~kv~~l~~~~Gh~G~aIv~F~~dw~ 178 (557)
+.+...|++ |+.|.++....+ ..| .||+.|.|.+.-.
T Consensus 38 ~~te~~L~~~F~~fG~v~~v~i--~~~-rgfaFV~f~~~~~ 75 (114)
T 2cq2_A 38 GVSRNQLLPVLEKCGLVDALLM--PPN-KPYSFARYRTTEE 75 (114)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEC--CTT-CSCEEEEESSHHH
T ss_pred CCCHHHHHHHHHhcCCeEEEEE--eCC-CCEEEEEECCHHH
Confidence 346788999 999997654433 233 7899999987543
No 331
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=20.94 E-value=94 Score=22.70 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhh
Q 008696 389 QKREKEEALSKILQLEKQLDAKQKL 413 (557)
Q Consensus 389 hkrEke~~~~ki~~LekqL~~kQ~L 413 (557)
-|.||+.++++.-++|+++...-+|
T Consensus 15 lK~ekd~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 15 LKLDKENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcc
Confidence 3679999999999999998877655
No 332
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.84 E-value=48 Score=22.29 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +..-..|..|-.
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enh_A 9 GEKPYECDVCRKA---FSHHASLTQHQR 33 (46)
T ss_dssp CSSSCBCTTTCCB---CSSSHHHHHHGG
T ss_pred CCCCcCCCCcCch---hCCHHHHHHHHH
Confidence 4567999999733 345566777854
No 333
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=46 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (44)
T 2epv_A 9 GEKPYECNECGKA---FIWKSLLIVHER 33 (44)
T ss_dssp CCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCcCeECCCCCcc---cCchHHHHHHHh
Confidence 4568999999733 344566777754
No 334
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=20.59 E-value=28 Score=26.52 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=10.1
Q ss_pred CCeeeccCCCCCCc
Q 008696 37 NGTLRCPFCSGKKK 50 (557)
Q Consensus 37 ~~~~~CP~C~gkkk 50 (557)
-..|.||.|...|.
T Consensus 33 P~dw~CP~Cg~~K~ 46 (52)
T 1yk4_A 33 PDDWVCPLCGAPKS 46 (52)
T ss_dssp CTTCBCTTTCCBGG
T ss_pred CCCCcCCCCCCCHH
Confidence 34599999986543
No 335
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.55 E-value=45 Score=21.74 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=16.4
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 8 ~~~~~~C~~C~k~---f~~~~~l~~H~~ 32 (42)
T 2epc_A 8 GETPYLCGQCGKS---FTQRGSLAVHQR 32 (42)
T ss_dssp SSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHhh
Confidence 4568999999733 334456777753
No 336
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.53 E-value=47 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=16.0
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.|+.|... +.....|..|-
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2eom_A 9 GERGHRCSDCGKF---FLQASNFIQHR 32 (46)
T ss_dssp CCSSCCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCcCCCCCCCe---eCChHHHHHHH
Confidence 4567999999733 33445666674
No 337
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.41 E-value=47 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=16.4
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytj_A 9 GEKPYICAECGKA---FTIRSNLIKHQK 33 (46)
T ss_dssp SCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCcCeECCCCChh---hCCHHHHHHHHH
Confidence 4567999999733 334556666743
No 338
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.34 E-value=42 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=12.8
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.||.|... +.....|..|-
T Consensus 11 ~~k~~~C~~C~k~---f~~~~~L~~H~ 34 (72)
T 1x6e_A 11 GEKPYGCVECGKA---FSRSSILVQHQ 34 (72)
T ss_dssp TCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCccCCCCCCc---cCCHHHHHHHH
Confidence 4556777777622 22334455553
No 339
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.34 E-value=49 Score=22.14 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +..-..|..|-.
T Consensus 9 ~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yrj_A 9 GEKPYRCGECGKA---FAQKANLTQHQR 33 (46)
T ss_dssp CCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 4568999999733 334556777754
No 340
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.33 E-value=28 Score=26.83 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=10.2
Q ss_pred CeeeccCCCCCCcC
Q 008696 38 GTLRCPFCSGKKKQ 51 (557)
Q Consensus 38 ~~~~CP~C~gkkk~ 51 (557)
..|.||.|...|.+
T Consensus 35 ~dw~CP~Cga~K~~ 48 (55)
T 2v3b_B 35 ADWVCPDCGVGKID 48 (55)
T ss_dssp TTCCCTTTCCCGGG
T ss_pred CCCcCCCCCCCHHH
Confidence 45999999865443
No 341
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.33 E-value=50 Score=22.06 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=17.0
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|+.. +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2epw_A 9 GEKPCKCTECGKA---FCWKSQLIMHQR 33 (46)
T ss_dssp CCCSEECSSSCCE---ESSSHHHHHHHH
T ss_pred CCCCeeCCCCCCc---cCCHHHHHHHHH
Confidence 4567999999733 445566777754
No 342
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=20.32 E-value=1.3e+02 Score=33.07 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHhhHHHHHh
Q 008696 324 CELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360 (557)
Q Consensus 324 ~eLe~k~~eL~~r~k~L~k~~~~~~~er~kL~~e~~k 360 (557)
.+|+.+.+..+.-...|++.+...+.+.++|..+..+
T Consensus 366 ~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~ 402 (575)
T 2i1j_A 366 LRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNM 402 (575)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666766666666666666555443
No 343
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.31 E-value=49 Score=22.29 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=17.1
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2ytp_A 9 GERHYECSECGKA---FARKSTLIMHQR 33 (46)
T ss_dssp CCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCeECCcCCcc---cCCHHHHHHHHH
Confidence 4668999999733 344566777754
No 344
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.30 E-value=47 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=15.8
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhh
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHA 62 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA 62 (557)
....|.|+.|... +.....|..|-
T Consensus 9 ~~~~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2em3_A 9 GEKPYECKVCSKA---FTQKAHLAQHQ 32 (46)
T ss_dssp SCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred CCcCeECCCCCcc---cCCHHHHHHHH
Confidence 4568999999733 33445566664
No 345
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.23 E-value=51 Score=21.48 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=16.3
Q ss_pred cCCeeeccCCCCCCcCccccHHHHhhhc
Q 008696 36 VNGTLRCPFCSGKKKQDYKHKDLLQHAS 63 (557)
Q Consensus 36 ~~~~~~CP~C~gkkk~~y~~~~LLqHA~ 63 (557)
....|.|+.|... +.....|..|-.
T Consensus 7 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (42)
T 2yte_A 7 GEKPYSCAECKET---FSDNNRLVQHQK 31 (42)
T ss_dssp SCCSCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 3567999999733 334556777754
Done!