BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008697
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 153/584 (26%), Positives = 262/584 (44%), Gaps = 67/584 (11%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNH 60
MEWW +WLNEGFA ++ +A ++ +PE + FL+ C E + D L S PI
Sbjct: 383 MEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAET 442
Query: 61 TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE- 119
+I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK++ NAK +DLW++L
Sbjct: 443 PTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNS 502
Query: 120 --------------------------GSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX 153
G V ++M +WT QKG P++
Sbjct: 503 CLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGCSLRLQ 562
Query: 154 XXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSI 204
D + W +P+T S +V +L +K+D+ D+ E
Sbjct: 563 QERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPE------ 616
Query: 205 SKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCM 262
W+K NV+ G+Y V Y+ +L + L DR G++ D F L
Sbjct: 617 -----KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVG 671
Query: 263 ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDY---LKQFFISL 319
A + TL L + ET L L +SY R + D LK++ +
Sbjct: 672 AGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDRRNISDISENLKRYLLQY 729
Query: 320 FQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLP 379
F+ ++ W K S D +LR + L H + +A++ F ++ +P
Sbjct: 730 FKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIP 787
Query: 380 PDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLN 439
D+ K Y V A +G+ LL Y + S E+ +IL +L++ +L+++
Sbjct: 788 TDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIE 842
Query: 440 FLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIV 494
+ +V ++Q+ ++ +A +G++ AW ++++NW H+ K + G + I IS
Sbjct: 843 LGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTT 902
Query: 495 SPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 537
+ F+S +K++EV+ FF S + + +E + N KW+E
Sbjct: 903 AHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLE 946
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/553 (28%), Positives = 256/553 (46%), Gaps = 68/553 (12%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRLDGLAESHPIEVEVN 59
M+WW LWLNE FAT++SY D+LFPEW W F T G LR D L +HPIEV+V
Sbjct: 278 MKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVR 337
Query: 60 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE 119
EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ + NA+ DLW A+E+
Sbjct: 338 DPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIED 397
Query: 120 GSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQWIVPITLCCGSY 179
SG+PV ++M W K GYPVI G +G+W VP+ +
Sbjct: 398 VSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-EGRWPVPVNI----- 451
Query: 180 DVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDK-DLAARLGY 238
K D + + LL S E D G IK+N + GFYRV YD + +G+
Sbjct: 452 ---------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYRVLYDDATFSDVMGH 499
Query: 239 AIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIG 298
+ LS DR G++DD FA ++ + + ++ ++ ++ V++ ++
Sbjct: 500 ---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVG------ 550
Query: 299 RIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLDALLRGEIFTALALL 353
++YL+ F + A ++ + + + +L L G + + L ++
Sbjct: 551 ---------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLKIAL-GRV-SRLYVM 598
Query: 354 GHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETD 413
+ E SK F F + P++R + +A + D G LL +R D
Sbjct: 599 VDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDLKG---LLEKFRSVD 647
Query: 414 LSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSIE---GRETAWKWLK 470
+++ RI+S+ + V + +E++ QD + + ++E GRE ++
Sbjct: 648 RDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGRE----FIF 703
Query: 471 DNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSRCKPYIARTLRQSIE 527
N D I + F R S V P + + E+ + I+ L + IE
Sbjct: 704 ANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNIGSKNISMGLAKGIE 762
Query: 528 RVQINAKWVESIR 540
+ +N K VE IR
Sbjct: 763 MLAVNRKLVERIR 775
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/553 (28%), Positives = 256/553 (46%), Gaps = 68/553 (12%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEG-LRLDGLAESHPIEVEVN 59
M+WW LWLNE FAT++SY D+LFPEW W F T G LR D L +HPIEV+V
Sbjct: 278 MKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVR 337
Query: 60 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE 119
EI +IFD ISY KGAS++RM+++Y G E F++ ++ Y+ + NA+ DLW A+E+
Sbjct: 338 DPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIED 397
Query: 120 GSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXXXXXXXXXGSPGDGQWIVPITLCCGSY 179
SG+PV ++M W K GYPVI G +G+W VP+ +
Sbjct: 398 VSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLLNGEE-EGRWPVPVNI----- 451
Query: 180 DVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDK-DLAARLGY 238
K D + + LL S E D G IK+N + GFYRV YD + +G+
Sbjct: 452 ---------KKKDGVE-RILLEDEASIEAD--GLIKINADSAGFYRVLYDDATFSDVMGH 499
Query: 239 AIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIG 298
+ LS DR G++DD FA ++ + + ++ ++ ++ V++ ++
Sbjct: 500 ---YRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVG------ 550
Query: 299 RIAADARPELLDYLKQFFISLFQNSAE-----KLGWDSKPGESHLDALLRGEIFTALALL 353
++YL+ F + A ++ + + + +L L G + + L ++
Sbjct: 551 ---------QMEYLR-MLTHAFDDDARAFCRSRMQFLTGKQDENLKIAL-GRV-SRLYVM 598
Query: 354 GHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETD 413
+ E SK F F + P++R + +A + D G LL +R D
Sbjct: 599 VDESYAEEMSKLFKDFDS------AEPEMRSS--IATAYALVTGDLKG---LLEKFRSVD 647
Query: 414 LSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSIE---GRETAWKWLK 470
+++ RI+S+ + V + +E++ QD + + ++E GRE ++
Sbjct: 648 RDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGRE----FIF 703
Query: 471 DNWDHISKTWGSGFLITRFISSIVS---PFASYEKVREVEEFFSSRCKPYIARTLRQSIE 527
N D I + F R S V P + + E+ + I+ L + IE
Sbjct: 704 ANLDRIIRLVIRYFTGNRTASRTVEMMIPVIGLDHP-DAEDIVRNIGSKNISMGLAKGIE 762
Query: 528 RVQINAKWVESIR 540
+ +N K VE IR
Sbjct: 763 MLAVNRKLVERIR 775
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/584 (26%), Positives = 261/584 (44%), Gaps = 67/584 (11%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNH 60
MEWW +WL EGFA ++ +A ++ +PE + FL+ C E + D L S PI
Sbjct: 383 MEWWNDIWLKEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAET 442
Query: 61 TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE- 119
+I E+FD +SY KGA ++ ML+++LG E FQ+ + Y+KK++ NAK +DLW++L
Sbjct: 443 PTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNS 502
Query: 120 --------------------------GSGEPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX 153
G V ++M +WT QKG P++
Sbjct: 503 CLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGCSLRLQ 562
Query: 154 XXXXXXXGSPGDGQ---------WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSI 204
D + W +P+T S +V +L +K+D+ D+ E
Sbjct: 563 QERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPE------ 616
Query: 205 SKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCM 262
W+K NV+ G+Y V Y+ +L + L DR G++ D F L
Sbjct: 617 -----KTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVG 671
Query: 263 ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDY---LKQFFISL 319
A + TL L + ET L L +SY R + D LK++ +
Sbjct: 672 AGRLTLDKALDMTYYLQHETSSPAL--LEGLSYLESFYHMMDRRNISDISENLKRYLLQY 729
Query: 320 FQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLP 379
F+ ++ W K S D +LR + L H + +A++ F ++ +P
Sbjct: 730 FKPVIDRQSWSDK--GSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIP 787
Query: 380 PDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLN 439
D+ K Y V A +G+ LL Y + S E+ +IL +L++ +L+++
Sbjct: 788 TDVLKIVY-----SVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIE 842
Query: 440 FLLSSEV-RSQD---AVYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIV 494
+ +V ++Q+ ++ +A +G++ AW ++++NW H+ K + G + I IS
Sbjct: 843 LGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTT 902
Query: 495 SPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 537
+ F+S +K++EV+ FF S + + +E + N KW+E
Sbjct: 903 AHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLE 946
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 152/585 (25%), Positives = 260/585 (44%), Gaps = 75/585 (12%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNH 60
MEWW LWLNEGFA ++ +++ PE K+ F +C + + +D L SHP+ V +
Sbjct: 321 MEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVSTPVEN 380
Query: 61 TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE- 119
+I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K++ N K EDLW ++
Sbjct: 381 PAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASI 440
Query: 120 --------------------------GSGEPVNKLMNSWTKQKGYPVIXXXX--XXXXXX 151
G V +MN+WT QKG+P+I
Sbjct: 441 CPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHMK 500
Query: 152 XXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDN 210
G+P G W VP+T D+ FLL K+D + E +
Sbjct: 501 QEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEV---------- 550
Query: 211 GGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTL 268
WIK NV G+Y V Y+ D L ++ +S DR ++++ F L + ++
Sbjct: 551 -EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSI 609
Query: 269 TSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 324
L L ETE + L+ LI + YK+ + E+ K F I L ++
Sbjct: 610 EKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLI 666
Query: 325 EKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 384
+K W + S + +LR ++ + ++ + A F + LP D+
Sbjct: 667 DKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL 724
Query: 385 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-- 442
A + V A G++ L Y+ + S EK++I A C N E L +LL
Sbjct: 725 AVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQN--KEKLQWLLDE 775
Query: 443 ---SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG-FLITRFISSI 493
++++Q+ + +++ GR AW++L+ NW+ + + + G I +
Sbjct: 776 SFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGT 833
Query: 494 VSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 537
+ F++ ++ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 834 TNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 878
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 188 bits (478), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 152/585 (25%), Positives = 260/585 (44%), Gaps = 75/585 (12%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNH 60
MEWW LWLNEGFA ++ +++ PE K+ F +C + + +D L SHP+ V +
Sbjct: 372 MEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVSTPVEN 431
Query: 61 TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEE- 119
+I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K++ N K EDLW ++
Sbjct: 432 PAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASI 491
Query: 120 --------------------------GSGEPVNKLMNSWTKQKGYPVIXXXX--XXXXXX 151
G V +MN+WT QKG+P+I
Sbjct: 492 CPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGRNVHMK 551
Query: 152 XXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDN 210
G+P G W VP+T D+ FLL K+D + E +
Sbjct: 552 QEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEV---------- 601
Query: 211 GGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTL 268
WIK NV G+Y V Y+ D L ++ +S DR ++++ F L + ++
Sbjct: 602 -EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSI 660
Query: 269 TSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 324
L L ETE + L+ LI + YK+ + E+ K F I L ++
Sbjct: 661 EKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLI 717
Query: 325 EKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 384
+K W + S + +LR ++ + ++ + A F + LP D+
Sbjct: 718 DKQTWTDEGSVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL 775
Query: 385 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-- 442
A + V A G++ L Y+ + S EK++I A C N E L +LL
Sbjct: 776 AVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQN--KEKLQWLLDE 826
Query: 443 ---SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG-FLITRFISSI 493
++++Q+ + +++ GR AW++L+ NW+ + + + G I +
Sbjct: 827 SFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGT 884
Query: 494 VSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 537
+ F++ ++ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 885 TNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 929
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 188 bits (477), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 154/570 (27%), Positives = 261/570 (45%), Gaps = 49/570 (8%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECTEGLRLDGLAESHPIEV--- 56
+ WW LWLNEGFA++V YL AD P W + + + + +D LA SHP+
Sbjct: 334 LAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAE 393
Query: 57 EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAA 116
EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N DLW
Sbjct: 394 EVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEH 453
Query: 117 LEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XXXXXXXGSP 163
L++ + V +M+ WT Q G+PVI S
Sbjct: 454 LQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSA 513
Query: 164 GDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGF 223
D WIVPI+ KN ++ + D+ + D+ W+ LNVN TG+
Sbjct: 514 FDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVLLNVNVTGY 564
Query: 224 YRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEE 281
++V YD+D + + ++ + + +R ++ D F L A +T L + E
Sbjct: 565 FQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGE 624
Query: 282 TEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL--GWDSKPGE 335
EY LS+L S R ++ + YL++ LFQ+ E L W +P E
Sbjct: 625 KEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTKNWTERP-E 680
Query: 336 SHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVS 395
+ +D + G + N A F +++D + P++R Y ++
Sbjct: 681 NLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYC---NAIA 737
Query: 396 ASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDA--- 451
+ ++ ++ L E ++ S+LA +V ++ L + L+ + +R QDA
Sbjct: 738 QGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATST 797
Query: 452 VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFF 510
+ +A ++ G+ AW +++ NW + + +G G F + I + F+S +++++E+F
Sbjct: 798 INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFK 857
Query: 511 SSRCKPYIA---RTLRQSIERVQINAKWVE 537
+ R L Q++E+ + N KWV+
Sbjct: 858 KNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 187 bits (476), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 154/570 (27%), Positives = 261/570 (45%), Gaps = 49/570 (8%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECTEGLRLDGLAESHPIEV--- 56
+ WW LWLNEGFA++V YL AD P W + + + + +D LA SHP+
Sbjct: 335 LAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAE 394
Query: 57 EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAA 116
EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N DLW
Sbjct: 395 EVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEH 454
Query: 117 LEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XXXXXXXGSP 163
L++ + V +M+ WT Q G+PVI S
Sbjct: 455 LQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSA 514
Query: 164 GDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGF 223
D WIVPI+ KN ++ + D+ + D+ W+ LNVN TG+
Sbjct: 515 FDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVLLNVNVTGY 565
Query: 224 YRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEE 281
++V YD+D + + ++ + + +R ++ D F L A +T L + E
Sbjct: 566 FQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGE 625
Query: 282 TEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL--GWDSKPGE 335
EY LS+L S R ++ + YL++ LFQ+ E L W +P E
Sbjct: 626 KEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTKNWTERP-E 681
Query: 336 SHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVS 395
+ +D + G + N A F +++D + P++R Y ++
Sbjct: 682 NLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYC---NAIA 738
Query: 396 ASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDA--- 451
+ ++ ++ L E ++ S+LA +V ++ L + L+ + +R QDA
Sbjct: 739 QGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATST 798
Query: 452 VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFF 510
+ +A ++ G+ AW +++ NW + + +G G F + I + F+S +++++E+F
Sbjct: 799 INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFK 858
Query: 511 SSRCKPYIA---RTLRQSIERVQINAKWVE 537
+ R L Q++E+ + N KWV+
Sbjct: 859 KNNMDVGFGSGTRALEQALEKTKANIKWVK 888
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 154/570 (27%), Positives = 261/570 (45%), Gaps = 49/570 (8%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECTEGLRLDGLAESHPIEV--- 56
+ WW LWLNEGFA++V YL AD P W + + + + +D LA SHP+
Sbjct: 334 LAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAE 393
Query: 57 EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAA 116
EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N DLW
Sbjct: 394 EVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEH 453
Query: 117 LEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XXXXXXXGSP 163
L++ + V +M+ WT Q G+PVI S
Sbjct: 454 LQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSA 513
Query: 164 GDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGF 223
D WIVPI+ KN ++ + D+ + D+ W+ LNVN TG+
Sbjct: 514 FDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVLLNVNVTGY 564
Query: 224 YRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEE 281
++V YD+D + + ++ + + +R ++ D F L A +T L + E
Sbjct: 565 FQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGE 624
Query: 282 TEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL--GWDSKPGE 335
EY LS+L S R ++ + YL++ LFQ+ E L W +P E
Sbjct: 625 KEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTKNWTERP-E 680
Query: 336 SHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVS 395
+ +D + G + N A F +++D + P++R Y ++
Sbjct: 681 NLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYC---NAIA 737
Query: 396 ASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDA--- 451
+ ++ ++ L E ++ S+LA +V ++ L + L+ + +R QDA
Sbjct: 738 QGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATST 797
Query: 452 VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFF 510
+ +A ++ G+ AW +++ NW + + +G G F + I + F+S +++++E+F
Sbjct: 798 INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFK 857
Query: 511 SSRCKPYIA---RTLRQSIERVQINAKWVE 537
+ R L Q++E+ + N KWV+
Sbjct: 858 KNNMDVGFGSGTRALEQALEKTKANIKWVK 887
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 154/570 (27%), Positives = 261/570 (45%), Gaps = 49/570 (8%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLD-ECTEGLRLDGLAESHPIEV--- 56
+ WW LWLNEGFA++V YL AD P W + + + + +D LA SHP+
Sbjct: 378 LAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAE 437
Query: 57 EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAA 116
EVN +I E+FD+ISY KGASVIRML N+L + F+ LASY+ +A N DLW
Sbjct: 438 EVNTPAQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEH 497
Query: 117 LEEGSG--------EPVNKLMNSWTKQKGYPVIXXXXXXXXXXXX-----XXXXXXXGSP 163
L++ + V +M+ WT Q G+PVI S
Sbjct: 498 LQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTGNISQKHFLLDSESNVTRSSA 557
Query: 164 GDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGF 223
D WIVPI+ KN ++ + D+ + D+ W+ LNVN TG+
Sbjct: 558 FDYLWIVPIS-------SIKNGVMQDHYWLRDVSQAQNDLFKTASDD--WVLLNVNVTGY 608
Query: 224 YRVKYDKDLAARLGYAIE--MKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEE 281
++V YD+D + + ++ + + +R ++ D F L A +T L + E
Sbjct: 609 FQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGE 668
Query: 282 TEY----TVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKL--GWDSKPGE 335
EY LS+L S R ++ + YL++ LFQ+ E L W +P E
Sbjct: 669 KEYMPWQAALSSLSYFSLMFDR--SEVYGPMKKYLRKQVEPLFQH-FETLTKNWTERP-E 724
Query: 336 SHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVS 395
+ +D + G + N A F +++D + P++R Y ++
Sbjct: 725 NLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYC---NAIA 781
Query: 396 ASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDA--- 451
+ ++ ++ L E ++ S+LA +V ++ L + L+ + +R QDA
Sbjct: 782 QGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATST 841
Query: 452 VYGLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFF 510
+ +A ++ G+ AW +++ NW + + +G G F + I + F+S +++++E+F
Sbjct: 842 INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFK 901
Query: 511 SSRCKPYIA---RTLRQSIERVQINAKWVE 537
+ R L Q++E+ + N KWV+
Sbjct: 902 KNNMDVGFGSGTRALEQALEKTKANIKWVK 931
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 153/585 (26%), Positives = 261/585 (44%), Gaps = 75/585 (12%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNH 60
MEWW LWLNEGFA ++ +++ PE K+ F +C + + +D L SHP+ V +
Sbjct: 330 MEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVSTPVEN 389
Query: 61 TGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLW---AAL 117
+I E+FD +SY KGA ++ ML+ YL A+ F+ + Y++K++ N K EDLW A++
Sbjct: 390 PAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASI 449
Query: 118 EEGSGEP------------------------VNKLMNSWTKQKGYPVIXXXX--XXXXXX 151
G V +MN+WT Q+G+P+I
Sbjct: 450 CPTDGVKGMDGFCSRSQHSSSSSHWHQERVDVKTMMNTWTLQRGFPLITITVRGRNVHMK 509
Query: 152 XXXXXXXXXGSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDN 210
G+P G W VP+T D+ FLL K+D + E +
Sbjct: 510 QEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEV---------- 559
Query: 211 GGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTL 268
WIK NV G+Y V Y+ D L ++ +S DR ++++ F L + ++
Sbjct: 560 -EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSI 618
Query: 269 TSLLTLMASYSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 324
L L ETE + L+ LI + YK+ + E+ K F I L ++
Sbjct: 619 EKALDLSLYLKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLI 675
Query: 325 EKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 384
+K W + S + +LR E+ + ++ + A F + LP D+
Sbjct: 676 DKQTWTDEGSVS--ERMLRSELLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL 733
Query: 385 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-- 442
A + V A G++ L Y+ + S EK++I A C N E L +LL
Sbjct: 734 AVFA-----VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQN--KEKLQWLLDE 784
Query: 443 ---SSEVRSQDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG-FLITRFISSI 493
++++Q+ + +++ GR AW++L+ NW+ + + + G I +
Sbjct: 785 SFKGDKIKTQE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGT 842
Query: 494 VSPFASYEKVREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 537
+ F++ ++ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 843 TNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 887
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/568 (26%), Positives = 260/568 (45%), Gaps = 47/568 (8%)
Query: 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWT-QFLDECTEGLRLDGLAESHPIEV--- 56
+EWW LWLNEGFA++V YL AD P W + L++ + +D LA SHP+
Sbjct: 337 IEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPAS 396
Query: 57 EVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAA 116
E+N +I E+FDAISY KGASV+RML ++L + F++ LASY+ +A N +LW
Sbjct: 397 EINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDH 456
Query: 117 LEEGSGE-------PVNKLMNSWTKQKGYPVIXXXXXXXXXXXXX-----XXXXXXGSPG 164
L+E V +MN WT Q G+PVI S
Sbjct: 457 LQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEHFLLDPDSNVTRPSEF 516
Query: 165 DGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFY 224
+ WIVPIT +L+ D +L S ++ W+ LN+N TG+Y
Sbjct: 517 NYVWIVPITSIRDGRQQQDYWLI----DVRAQNDLFSTSGNE------WVLLNLNVTGYY 566
Query: 225 RVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEET 282
RV YD++ ++ ++ + +R I++D F L A + +T L EE
Sbjct: 567 RVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEER 626
Query: 283 EYTVL-SNLITISY-KIGRIAADARPELLDYLKQFFISL---FQNSAEKLGWDSKPGESH 337
+Y + L ++SY K+ ++ + +YLK+ L F+N+ W P E+
Sbjct: 627 QYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTN--NWREIP-ENL 683
Query: 338 LDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSAS 397
+D + G E S F ++ + + P++R Y ++
Sbjct: 684 MDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYC---NAIAQG 740
Query: 398 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDA---VY 453
++ +R L E ++ ++LA ++ I+ L++ L+ + +R QDA +
Sbjct: 741 GEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTII 800
Query: 454 GLAVSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS 512
+ ++ G+ W +++ NW + +G G F + I ++ F++ +++++E+F
Sbjct: 801 SITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKD 860
Query: 513 RCKPYIA---RTLRQSIERVQINAKWVE 537
+ R L Q++E+ + N KWV+
Sbjct: 861 NEETGFGSGTRALEQALEKTKANIKWVK 888
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 46/396 (11%)
Query: 161 GSPGDGQ-WIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 219
G+P G W VP+T D+ FLL K+D + E + WIK NV
Sbjct: 27 GAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPEEVE-----------WIKFNVG 75
Query: 220 QTGFYRVKYDKDLAARLGYAIEMKQ--LSETDRFGILDDHFALCMARQQTLTSLLTLMAS 277
G+Y V Y+ D L ++ +S DR ++++ F L + ++ L L
Sbjct: 76 MNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLY 135
Query: 278 YSEETE----YTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKP 333
ETE + L+ LI + YK+ + E+ K F I L ++ +K W +
Sbjct: 136 LKHETEIMPVFQGLNELIPM-YKL--MEKRDMNEVETQFKAFLIRLLRDLIDKQTWTDEG 192
Query: 334 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK 393
S + +LR ++ + ++ + A F + LP D+ A +
Sbjct: 193 SVS--ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFA----- 245
Query: 394 VSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLL-----SSEVRS 448
V A G++ L Y+ + S EK++I A C N E L +LL ++++
Sbjct: 246 VGAQSTEGWDFLYSKYQFSLSSTEKSQI--EFALCRTQNK--EKLQWLLDESFKGDKIKT 301
Query: 449 QDAVYGLAVSIEGRET-----AWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEK 502
Q+ + +++ GR AW++L+ NW+ + + + G I + + F++ +
Sbjct: 302 QE--FPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTR 359
Query: 503 VREVEEFFSS-RCKPYIARTLRQSIERVQINAKWVE 537
+ EV+ FFSS + R ++Q+IE ++ N W++
Sbjct: 360 LEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMD 395
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 46 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 105
D +HPI ++ E++ + Y KGA VIRM+ LG E FQ+ + Y +++
Sbjct: 377 DASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDG 434
Query: 106 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 141
S A +D A+E+ S ++ W Q G P++
Sbjct: 435 SAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 469
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 46 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 105
D +HPI ++ E++ + Y KGA VIRM+ LG E FQ+ + Y +++
Sbjct: 377 DASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDG 434
Query: 106 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 141
S A +D A+E+ S ++ W Q G P++
Sbjct: 435 SAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 469
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 46 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 105
D +HPI ++ E++ + Y KGA VIRM+ LG E FQ+ + Y +++
Sbjct: 356 DASPMAHPIRPDM--VIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDG 413
Query: 106 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 141
S A +D A+E+ S ++ W Q G P++
Sbjct: 414 SAATCDDFVQAMEDASNVDLSHF-RRWYSQSGTPIV 448
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 309 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 366
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 367 LTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 426
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 427 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 454
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 317 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 374
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 375 LTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 434
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 435 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 312 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 369
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 370 LTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 429
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 430 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 317 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 374
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 375 LTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 434
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 435 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 462
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 311 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 368
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 369 LTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 428
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 429 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 311 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 368
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 369 LTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 428
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 429 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 311 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 368
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 369 LTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 428
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 429 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 456
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL---DECTEGLRLDGLAESHPIEVEVNH 60
W H WLNEG ++ LF E L E ++ G E+HP V
Sbjct: 312 WDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFG--ETHPFTKLVVD 369
Query: 61 TGEIDE--IFDAISYRKGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ID + ++ Y KG +++ L+ LG E F L +Y++K++ + T+D L
Sbjct: 370 LTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFL 429
Query: 118 EEGSGEPVNKLM----NSWTKQKGYPVI 141
+ V+ L N+W G P I
Sbjct: 430 YSYFKDKVDVLNQVDWNAWLYSPGLPPI 457
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 51 SHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKT 110
SHPI E ++ + Y KG+ V+RM LG E +++ YIKK + A
Sbjct: 366 SHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATC 423
Query: 111 EDLWAALEEG 120
ED A+E+
Sbjct: 424 EDFNYAMEQA 433
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 51 SHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKT 110
SHPI E ++ + Y KG+ V+RM LG E +++ YIKK + A
Sbjct: 366 SHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATC 423
Query: 111 EDLWAALEEG 120
ED A+E+
Sbjct: 424 EDFNYAMEQA 433
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 51 SHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKT 110
SHPI E ++ + Y KG+ V+RM LG E +++ YIKK + A
Sbjct: 365 SHPIRPE--SYVSMENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATC 422
Query: 111 EDLWAALEEG 120
ED A+E+
Sbjct: 423 EDFNYAMEQA 432
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLDECTEGLRLDGLAESHP 53
W H WLNEG+ ++ ++ E W +D + R L ++
Sbjct: 317 WNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDSMKDPERFSTLVQN-- 374
Query: 54 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSLASYIKKYACSNAKT 110
+N + D+ F + Y KG +++ L+ LG + F + Y KK+A + T
Sbjct: 375 ----LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDT 428
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 4 WTHLWLNEGFATWVSYLAADSLFPE----------WKIWTQFLDECTEGLRLDGLAESHP 53
W H WLNEG+ ++ ++ E W +D + R L ++
Sbjct: 317 WNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSIDSMKDPERFSTLVQN-- 374
Query: 54 IEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAEC-FQRSLASYIKKYACSNAKT 110
+N + D+ F + Y KG +++ L+ LG + F + Y KK+A + T
Sbjct: 375 ----LNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDT 428
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 51 SHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKT 110
SHPI E + + Y KG+ V+RM LG E +++ YIKK + A
Sbjct: 365 SHPIRPE--SYVSMANFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATC 422
Query: 111 EDLWAALEEG 120
ED A+E+
Sbjct: 423 EDFNYAMEQA 432
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 12/147 (8%)
Query: 2 EWWTHLWLNEGFATWVSYLAADSLF-PEWKIWTQFL---DECTEGLRLDGLAESHPIEVE 57
E W LWLNEGF ++V +++F + + Q L D E L LD I+++
Sbjct: 314 ESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILELDASDTQLYIDLK 373
Query: 58 VNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAAL 117
+ D+ F + Y KG + L+ G E F + Y +A + T++ L
Sbjct: 374 ---GRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTDNFVKYL 430
Query: 118 EEGSGEPVNKL-----MNSWTKQKGYP 139
+ + + +N W + G P
Sbjct: 431 KANLTDKYPNIVSDNEINEWIFKAGLP 457
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 409 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 462
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 118 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEGE 177
Query: 463 ETAW 466
+ AW
Sbjct: 178 QQAW 181
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 409 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 462
Y E D S +IL ++ C + +V L+ N LL+S+++ + A +GLA+ +EG
Sbjct: 107 YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGE 166
Query: 463 ETAW 466
+ AW
Sbjct: 167 QQAW 170
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 409 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 462
Y E D S +IL ++ C + +V L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGD 159
Query: 463 ETAW 466
+ AW
Sbjct: 160 QQAW 163
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 46 DGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYAC 105
D +HP+ E + + Y KGA V+R LG E FQ+ Y +++
Sbjct: 352 DAGPTAHPVRPASYE--EXNNFYTXTVYEKGAEVVRXYHTLLGEEGFQKGXKLYFQRHDG 409
Query: 106 SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVI 141
+D AA + +G +++ W Q G PV+
Sbjct: 410 QAVTCDDFRAAXADANGINLDQFA-LWYSQAGTPVL 444
>pdb|3SK1|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|C Chain C, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK1|D Chain D, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087, Apo Form
pdb|3SK2|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
pdb|3SK2|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
From Enterobacter Agglomerans (Erwinia Herbicola,
Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
Acid
Length = 132
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 121 SGEPVNKLMNSWTKQKGYPVI 141
+GE V+KL N WTKQK + +I
Sbjct: 82 TGEDVDKLFNEWTKQKSHQII 102
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 409 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 462
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 463 ETAW 466
+ AW
Sbjct: 160 QQAW 163
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 409 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 462
Y E D S +IL S+ C IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 100 YSEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLAIEVQGD 159
Query: 463 ETAW 466
+ AW
Sbjct: 160 QQAW 163
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 409 YRETDLSQEKTRILSSLASCPDVNIV---LEVLNFLLSSEVRS---QDAVYGLAVSIEGR 462
Y E D S +IL S+ +IV L+ N LL+S+ + + A +GLA+ ++G
Sbjct: 127 YSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGE 186
Query: 463 ETAW 466
+ AW
Sbjct: 187 QQAW 190
>pdb|3C2R|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
pdb|3C2R|B Chain B, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With The Inhibitor Phthalate
Length = 295
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 20 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 73
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 236 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 289
>pdb|3C2E|A Chain A, Crystal Structure At 1.9a Of The Apo Quinolinate
Phosphoribosyl Transferase (Bna6) From Saccharomyces
Cerevisiae
pdb|3C2O|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Sachharomyces Cerevisiae
Complexed With Quinolinate
pdb|3C2F|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp
pdb|3C2V|A Chain A, Crystal Structure Of The Quinolinate Phosphoribosyl
Transferase (Bna6) From Saccharomyces Cerevisiae
Complexed With Prpp And The Inhibitor Phthalate
Length = 294
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 20 LAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISY 73
+ A SL +W FL EC+ GL LD L E ++++ T I + I +
Sbjct: 235 MCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTPVIDF 288
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 446 VRSQDAVYGLAVSIEGR------ETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFAS 499
+R Q+ + G +++ E R E + KWL+D D ++K G F I+ S
Sbjct: 66 IRDQELIVG-SLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISE---------ES 115
Query: 500 YEKVREVEEFFSSRCKPYIARTLRQSIERVQIN 532
EK+++V E+++ + +A + R +N
Sbjct: 116 KEKLKDVFEYWNGKTTSELATSYMTEETREAVN 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,007,861
Number of Sequences: 62578
Number of extensions: 623290
Number of successful extensions: 1808
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 51
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)