Query 008697
Match_columns 557
No_of_seqs 238 out of 2020
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 15:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 3.1E-91 6.7E-96 781.9 54.5 530 1-552 343-880 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1.1E-73 2.4E-78 641.5 53.5 506 1-537 306-830 (831)
3 PF11838 ERAP1_C: ERAP1-like C 100.0 4.3E-54 9.4E-59 438.9 32.4 313 213-530 1-324 (324)
4 COG0308 PepN Aminopeptidase N 100.0 3.6E-47 7.9E-52 426.8 44.0 518 1-539 326-856 (859)
5 TIGR02414 pepN_proteo aminopep 100.0 1.9E-31 4.1E-36 296.4 46.4 419 1-444 302-766 (863)
6 PRK14015 pepN aminopeptidase N 100.0 4.5E-31 9.8E-36 294.3 44.7 419 1-444 315-776 (875)
7 TIGR02411 leuko_A4_hydro leuko 99.9 1.9E-25 4.2E-30 242.0 12.3 144 1-146 298-453 (601)
8 KOG1047 Bifunctional leukotrie 99.6 4.2E-15 9E-20 151.0 8.0 141 3-145 309-461 (613)
9 PF01433 Peptidase_M1: Peptida 99.3 2.5E-12 5.3E-17 134.7 4.4 76 1-76 314-390 (390)
10 PF13485 Peptidase_MA_2: Pepti 97.9 1.3E-05 2.8E-10 69.3 4.4 82 4-99 47-128 (128)
11 KOG1932 TATA binding protein a 96.9 0.0044 9.6E-08 69.4 10.0 127 2-145 361-505 (1180)
12 PF11940 DUF3458: Domain of un 96.2 1.7 3.6E-05 44.8 22.8 248 149-431 6-266 (367)
13 COG3975 Predicted protease wit 95.9 0.055 1.2E-06 56.5 10.2 85 73-157 357-448 (558)
14 smart00638 LPD_N Lipoprotein N 91.8 8.2 0.00018 42.6 17.6 186 242-444 368-560 (574)
15 PF10460 Peptidase_M30: Peptid 88.9 2.1 4.6E-05 43.7 8.7 117 5-136 166-285 (366)
16 PF13646 HEAT_2: HEAT repeats; 84.7 4.7 0.0001 31.7 7.1 75 340-426 14-88 (88)
17 COG2719 SpoVR Uncharacterized 78.7 15 0.00032 38.0 9.4 30 9-38 270-299 (495)
18 PF07607 DUF1570: Protein of u 76.1 1.1 2.3E-05 38.6 0.6 16 7-22 28-43 (128)
19 PF01347 Vitellogenin_N: Lipop 75.3 34 0.00073 38.1 12.5 95 343-443 507-603 (618)
20 PF12069 DUF3549: Protein of u 66.7 1.1E+02 0.0024 31.1 12.4 100 346-456 172-272 (340)
21 PF07539 DRIM: Down-regulated 64.4 78 0.0017 27.8 9.7 62 375-444 78-140 (141)
22 KOG2062 26S proteasome regulat 62.6 42 0.00092 37.3 9.0 100 334-441 494-597 (929)
23 PF11940 DUF3458: Domain of un 60.0 1.5E+02 0.0033 30.6 12.4 129 335-482 213-343 (367)
24 PF03715 Noc2: Noc2p family; 53.8 1.1E+02 0.0024 30.7 10.0 49 504-552 228-284 (299)
25 PF10805 DUF2730: Protein of u 47.4 1.3E+02 0.0028 25.0 7.8 44 465-510 1-44 (106)
26 PF05299 Peptidase_M61: M61 gl 45.2 9.5 0.0002 32.6 0.8 20 5-24 38-57 (122)
27 PF13646 HEAT_2: HEAT repeats; 44.8 61 0.0013 25.0 5.5 61 379-443 13-73 (88)
28 PRK09687 putative lyase; Provi 36.0 4.4E+02 0.0095 26.0 13.5 141 273-445 27-172 (280)
29 COG5116 RPN2 26S proteasome re 29.9 1.9E+02 0.0042 31.4 7.5 102 334-443 491-596 (926)
30 KOG2653 6-phosphogluconate deh 28.9 3.6E+02 0.0079 27.6 8.8 117 248-385 318-449 (487)
31 PLN03081 pentatricopeptide (PP 28.5 8.9E+02 0.019 27.3 15.8 22 78-99 89-110 (697)
32 PF04450 BSP: Peptidase of pla 27.7 2.9E+02 0.0063 25.9 7.8 56 68-131 148-204 (205)
33 PF05596 Taeniidae_ag: Taeniid 24.8 2.9E+02 0.0062 20.7 5.6 50 499-552 12-61 (64)
34 PF14675 FANCI_S1: FANCI solen 24.2 5.4E+02 0.012 24.5 8.9 117 249-367 4-121 (223)
35 cd00244 AlgLyase Alginate Lyas 24.0 7.8E+02 0.017 25.1 12.0 120 306-437 148-284 (339)
36 PF09836 DUF2063: Uncharacteri 23.5 64 0.0014 25.9 2.3 31 83-113 55-85 (94)
37 COG0362 Gnd 6-phosphogluconate 23.3 5.6E+02 0.012 26.8 9.1 118 247-385 312-444 (473)
38 PF09554 RE_HaeII: HaeII restr 23.3 4.2E+02 0.009 25.9 7.7 88 436-531 68-156 (338)
39 PF08653 DASH_Dam1: DASH compl 22.8 90 0.002 22.8 2.6 16 9-24 34-49 (58)
40 PF08845 SymE_toxin: Toxin Sym 22.2 93 0.002 22.6 2.6 26 128-153 28-56 (57)
41 TIGR02270 conserved hypothetic 21.9 5.2E+02 0.011 27.2 9.1 91 340-443 161-251 (410)
42 PF09862 DUF2089: Protein of u 21.8 1.1E+02 0.0024 25.7 3.3 54 222-275 57-112 (113)
43 PF15467 SGIII: Secretogranin- 21.1 65 0.0014 32.3 2.1 47 498-544 355-412 (453)
44 PF10045 DUF2280: Uncharacteri 21.1 1.2E+02 0.0027 24.8 3.3 54 415-468 6-59 (104)
45 PF11916 Vac14_Fig4_bd: Vacuol 20.2 2.5E+02 0.0054 25.8 5.5 29 74-102 7-35 (182)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-91 Score=781.89 Aligned_cols=530 Identities=42% Similarity=0.709 Sum_probs=488.8
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhH-hhhhhcccCCCCCeeeecCCcccccccccccccchhhHH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 79 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~-~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~v 79 (557)
|+||+|||||||||+||++++++..+|+|.++++|+.... .++..|++.++|||+.++.++.+|.++||.|+|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 8999999999999999999999999999999999988766 899999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEeCCEEEEEEeeccC
Q 008697 80 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 159 (557)
Q Consensus 80 l~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~~~~~~i~Q~rf~~ 159 (557)
||||+.++|++.|++||+.||++|+|+|++++|||++|+...+.+|.++|++|+.|+|||+|+|.++++.++++|+||+.
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999998899999999988
Q ss_pred CC--CCCCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCCCCceEecCCceeeEEEEcCHHHHHHHH
Q 008697 160 SG--SPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLG 237 (557)
Q Consensus 160 ~~--~~~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~~~~l~ 237 (557)
.+ ...+++|+||+++.+.........++..++..+.++. ++ .||++|.++.|||||+||+++|..|+
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~ 571 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLI 571 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHH
Confidence 65 3456899999999877544335678888887777743 22 69999999999999999999999999
Q ss_pred HHHhc-CCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHhhhcccChhHHHHHHHHH
Q 008697 238 YAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFF 316 (557)
Q Consensus 238 ~~l~~-~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 316 (557)
.+|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.|+.+|++|.||..+...+..+.. + ...+.+..++.|+
T Consensus 572 ~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~--~~~~~~~~~~~~~ 648 (882)
T KOG1046|consen 572 EQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-L--EDTEIYSKFKEFV 648 (882)
T ss_pred HHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-c--ccchHHHHHHHHH
Confidence 99977 689999999999999999999999999999999999999999999999887777776 2 3367889999999
Q ss_pred HHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCC
Q 008697 317 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSA 396 (557)
Q Consensus 317 ~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~ 396 (557)
.+++.|.++++||.....++ ....+|..++..||..|+++|.+.|..+|..|+.. ++.+|+++|.+|||.++++|
T Consensus 649 ~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~~~~g-- 723 (882)
T KOG1046|consen 649 KKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTAVQFG-- 723 (882)
T ss_pred HHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHHHHhc--
Confidence 99999999999998755443 77889999999999999999999999999999996 68899999999999999998
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhc-cccccccchhhhh---cCcccHHHHHHHHHHh
Q 008697 397 SDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA---VSIEGRETAWKWLKDN 472 (557)
Q Consensus 397 ~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~-~~i~~qd~~~~~~---~~~~~~~~~w~fl~~N 472 (557)
+++.|++++++|+++....||..++.||+|+++++.++++|++.++ ..++.||...++. .++.|..++|+|+.+|
T Consensus 724 -~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n 802 (882)
T KOG1046|consen 724 -TEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDN 802 (882)
T ss_pred -CHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888 3499999998877 6788999999999999
Q ss_pred HHHHHHHhCCCcchhhHHHhhccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHh
Q 008697 473 WDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKEL 552 (557)
Q Consensus 473 ~~~i~~~~~~~~~l~~iv~~~~~~~~t~~~~~~~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~~~~~~~~~ 552 (557)
|+.+.+++++++.+..++..+++.+.+..+++++++||...+..+..+++++++|.++.|+.|++++.+. +.+|+.+.
T Consensus 803 ~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~--l~~~l~~~ 880 (882)
T KOG1046|consen 803 WKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEEN--LTQWLLEA 880 (882)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHH--HHHHHHHh
Confidence 9999999994488999999999999999999999999999876666899999999999999999955555 99999864
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.1e-73 Score=641.45 Aligned_cols=506 Identities=19% Similarity=0.257 Sum_probs=416.6
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHh-HhhhhhcccCCCCCeeeecCCcccccccccccccchhhHH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDEC-TEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 79 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~-~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~v 79 (557)
|+||+|+|||||||+||++++++..+|+|..+..|.... ..++..|+..++|||..++.++.++...||.|+|.||++|
T Consensus 306 ~~wW~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~v 385 (831)
T TIGR02412 306 MRWWNDLWLNESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASV 385 (831)
T ss_pred cccccchhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHH
Confidence 799999999999999999999999999999999997754 4889999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEe--CCEEE-EEEee
Q 008697 80 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEKLE-LEQSQ 156 (557)
Q Consensus 80 l~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~--~~~~~-i~Q~r 156 (557)
||||+.+||+++|++||+.|+++|+|+|++++|||++|++++|.++.+||++|++|+|||+|+|++. ++.++ +.|.+
T Consensus 386 L~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~ 465 (831)
T TIGR02412 386 LKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES 465 (831)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 45444 22322
Q ss_pred ccCCCCCCCceEEEEEEEEecCCCc-e----eeEEecCCccEEEcccccccccCCCCCCCCceEecCCceeeEEEEcCHH
Q 008697 157 FLSSGSPGDGQWIVPITLCCGSYDV-C----KNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKD 231 (557)
Q Consensus 157 f~~~~~~~~~~W~iPl~~~~~~~~~-~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~ 231 (557)
.+. ...|.|||.+....... . ..+.+......+. ... ..++ ++||++|.++.|||||+||++
T Consensus 466 ---~~~--~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~--~~~v~~N~~~~gyyrv~yd~~ 532 (831)
T TIGR02412 466 ---SGP--PRPHRIAIGLYDLDRDDLRRTTLVPLTISGERTAVP--QLV----GKRA--PALVLLNDDDLTYAKVRLDPT 532 (831)
T ss_pred ---CCC--CCCeeEEEeeeecCCCcceeeeEEEEEEecCceeeh--hhc----CCCC--CCEEEEeCCCcEEEEEECCHH
Confidence 111 24599999985432221 1 1133433222221 110 0112 279999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHH-HhcccCCChhhHHHHHHHHH-HHHhhhcccChhHH
Q 008697 232 LAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELL 309 (557)
Q Consensus 232 ~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~-~~l~~E~~~~vw~~~~~~l~-~l~~~~~~~~~~~~ 309 (557)
+|..|..+|.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+...+.. ++.+
T Consensus 533 ~~~~l~~~l~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~ 609 (831)
T TIGR02412 533 SFDTVLAALSK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADR 609 (831)
T ss_pred HHHHHHHHhhh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHH
Confidence 99999999853 23799999999999999999999999999976 79999999999999998888 77766532 5667
Q ss_pred HHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHH
Q 008697 310 DYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVA 389 (557)
Q Consensus 310 ~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~ 389 (557)
..+++++..++.+.... ++++.+..++. +..++|..|+++|++.++++|+.++.+ ..||||+|+.|||.
T Consensus 610 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~ 678 (831)
T TIGR02412 610 PALLAVAALACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIAR 678 (831)
T ss_pred HHHHHHHHHHHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHH
Confidence 88999998888764321 22222333332 555799999999999999999987653 37999999999998
Q ss_pred HHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhccc-cccccchhhhh--cCcccHHHHH
Q 008697 390 VMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDAVYGLA--VSIEGRETAW 466 (557)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~-i~~qd~~~~~~--~~~~~~~~~w 466 (557)
+++. +..+|+.+++.|++++++.+|..++.||||++|++++++.+..++.++ +++||+..++. .++.+++++|
T Consensus 679 ~~~~----~~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (831)
T TIGR02412 679 LAAL----GFIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLA 754 (831)
T ss_pred HHhc----CCCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHH
Confidence 7773 677888899999999999999999999999999999997777666654 89999988877 4678999999
Q ss_pred HHHHHhHHHHHHHhCC-CcchhhHHHhhcc--CCCCHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHHHH
Q 008697 467 KWLKDNWDHISKTWGS-GFLITRFISSIVS--PFASYEKVREVEEFFSS--RCKPYIARTLRQSIERVQINAKWVE 537 (557)
Q Consensus 467 ~fl~~N~~~i~~~~~~-~~~l~~iv~~~~~--~~~t~~~~~~~~~F~~~--~~~~~~~~~~~~~le~i~~ni~W~~ 537 (557)
+|+++||+.|.++++. +..+.+.+...+. .+|+++.++++++||++ +..++.+|.+.++++.++.|+++.+
T Consensus 755 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 755 AYAERYFANLADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 9999999999999975 3455544444443 88999999999999974 3456789999999999999998865
No 3
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=4.3e-54 Score=438.91 Aligned_cols=313 Identities=36% Similarity=0.627 Sum_probs=271.1
Q ss_pred ceEecCCceeeEEEEcCHHHHHHHHHHHhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhc-ccCCChhhHHHHH
Q 008697 213 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 291 (557)
Q Consensus 213 wi~~N~~~~gyyRV~Yd~~~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l-~~E~~~~vw~~~~ 291 (557)
||++|.+++|||||+||+++|..|+.+|..+.|++.+|++|++|+|+++++|+++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 899999999999999999999999999987669999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcccChhHHHHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Q 008697 292 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 371 (557)
Q Consensus 292 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~ 371 (557)
..+..+...+...++.....|++|+++++.|+++++||+..+++++....+|..++.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999865543234444459999999999999999999988899999999999999999 999999999999999999
Q ss_pred CCCC--CCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhccc-ccc
Q 008697 372 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 448 (557)
Q Consensus 372 ~~~~--~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~-i~~ 448 (557)
++.+ ..|||++|..|||.++++| +.++|+.++++|++++++.+|..++.||||++||++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~~~~~g---~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCAGVRNG---DEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHHHHHHh---hHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7543 3899999999999999987 889999999999999999999999999999999999999999999986 999
Q ss_pred ccchhhhh----cCcccHHHHHHHHHHhHHHHHHHhCCC-cchhhHHHhhccCCCCHHHHHHHHHHHhc--CCcchHHHH
Q 008697 449 QDAVYGLA----VSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSS--RCKPYIART 521 (557)
Q Consensus 449 qd~~~~~~----~~~~~~~~~w~fl~~N~~~i~~~~~~~-~~l~~iv~~~~~~~~t~~~~~~~~~F~~~--~~~~~~~~~ 521 (557)
||+..++. .++.|++++|+|+++||+.|.++++++ +.+..++..+++.++|+++++++++||++ ++.++..++
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988875 588999999999999999999999876 47889999999999999999999999954 445778899
Q ss_pred HHHHHHHHH
Q 008697 522 LRQSIERVQ 530 (557)
Q Consensus 522 ~~~~le~i~ 530 (557)
++|++|+||
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999986
No 4
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-47 Score=426.81 Aligned_cols=518 Identities=26% Similarity=0.397 Sum_probs=399.7
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCC-chhhHHHHHHHhH-hhhhhcccCCCCCeeeecCCcccccccccccccchhhH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGAS 78 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p-~~~~~~~f~~~~~-~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~ 78 (557)
|+||+|||||||||+|+++.+.+.++| +|..++.|..... .+|..|+..++|||...+.+|.+|+++||.|+|.||++
T Consensus 326 ~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~ 405 (859)
T COG0308 326 MKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGAS 405 (859)
T ss_pred ccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcchhhcchhHH
Confidence 799999999999999999999999999 9999999877544 49999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEeCC-EEEEEEeec
Q 008697 79 VIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-KLELEQSQF 157 (557)
Q Consensus 79 vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~~~-~~~i~Q~rf 157 (557)
|+|||+.++|++.|++||+.|+++|+|+|+++.|||+++++++|.++..+|.+|++|+|||+|+|+.... .++++|.||
T Consensus 406 vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~~~l~~~q~ 485 (859)
T COG0308 406 VLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDFFKLTQKQF 485 (859)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeeccccEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999998755 788999999
Q ss_pred cCCCCCCCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCCCCceEecCCceeeEEEEcCHHHHHHHH
Q 008697 158 LSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLG 237 (557)
Q Consensus 158 ~~~~~~~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~~~~l~ 237 (557)
...+......|.||+.+............+.+...++.+... +.....-+++|....++|++.|+.+.+..++
T Consensus 486 ~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~-------~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~ 558 (859)
T COG0308 486 TPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELV-------GIPPFPSLKVNDSAPVFYRVDYSDQSLSKLL 558 (859)
T ss_pred ccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEecc-------cCCccceeeccCCccceEEEecCHHHHHHHH
Confidence 887644456899999998764331233344555445544221 1000136788999999999999999998886
Q ss_pred HHHhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhccc-CCChhhHHHHH-HHHHHHHhhhcccChhHHHHHHHH
Q 008697 238 YAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSE-ETEYTVLSNLI-TISYKIGRIAADARPELLDYLKQF 315 (557)
Q Consensus 238 ~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~-E~~~~vw~~~~-~~l~~l~~~~~~~~~~~~~~~~~~ 315 (557)
.... .+.+.+|+.++.|..++..+|..+...++..+.-.-. +..+..-..++ ..+..+.... ..+ ..+...
T Consensus 559 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~--~~~~~~ 631 (859)
T COG0308 559 QHDP--RLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFA---DLE--KFIDPD 631 (859)
T ss_pred hhhh--hhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccch---hhh--hhcCHH
Confidence 6543 6889999999999999999999999999888765444 43333333333 2222222211 111 234445
Q ss_pred HHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcC
Q 008697 316 FISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVS 395 (557)
Q Consensus 316 ~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~ 395 (557)
....+...+.++++....++ .........+ ..++......+......++..+-.. ...++|++|..+--.....+
T Consensus 632 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 706 (859)
T COG0308 632 AIDQLRDALVRLGAEAVADD-LLALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVVKAYAAAG- 706 (859)
T ss_pred HHHHHHHHHHHHHHHhhcch-HHHHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHHHHHHHhc-
Confidence 55556666666666543322 2222222222 5566667778888888888776432 34578999988776655543
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc-ccccccchhhhh---cCcccHHHHHHHHHH
Q 008697 396 ASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA---VSIEGRETAWKWLKD 471 (557)
Q Consensus 396 ~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~~-~i~~qd~~~~~~---~~~~~~~~~w~fl~~ 471 (557)
+..+.+..+.+.|...+....+..+..+.+..+.+..+.+.|..+... .+.+|+...+.. .++.+++++|.|...
T Consensus 707 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (859)
T COG0308 707 -NMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNEARWLYGTF 785 (859)
T ss_pred -ChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchhhHHHHHHH
Confidence 133368899999999888888999999999999999999999888765 478888877766 678899999999999
Q ss_pred hHH---HHHHHhCCCcc-hhhHHHhhccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 008697 472 NWD---HISKTWGSGFL-ITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESI 539 (557)
Q Consensus 472 N~~---~i~~~~~~~~~-l~~iv~~~~~~~~t~~~~~~~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~ 539 (557)
||+ .+....+++.. ...++. ....+.....+.++++|++....++..+.+.+++++|....++.+..
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~l~~~~ 856 (859)
T COG0308 786 AFENPALLHALDGSGYRFLGVIVL-ELNIFNPQLALRKIEEFLELKKLKALERLIREALETIAARERLSKDL 856 (859)
T ss_pred hhhchhhhhhhccccccccceEEE-EeeccchhhHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhhhhhh
Confidence 998 55566555532 233333 34467788889999999998776677889999999999998887643
No 5
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.9e-31 Score=296.44 Aligned_cols=419 Identities=19% Similarity=0.228 Sum_probs=254.1
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCch--hhHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEW--KIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGAS 78 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~--~~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~ 78 (557)
|+||+++|||||||+|++........+.. .+....... ..++..|+.+.+|||... +..++...|+.++|.||++
T Consensus 302 ~~~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr-~~~f~~D~~p~~~Pi~~~--~~~~i~~~y~~i~Y~KGA~ 378 (863)
T TIGR02414 302 CRDWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLR-AHQFPEDAGPMAHPVRPE--SYVEINNFYTATVYEKGAE 378 (863)
T ss_pred ecchhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhcccccccCCCCCCc--chhhHHhccchHHhHHHHH
Confidence 68999999999999999986655544321 111111111 145677989999999753 4567889999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEe----CC--EEEE
Q 008697 79 VIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK----EE--KLEL 152 (557)
Q Consensus 79 vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~----~~--~~~i 152 (557)
|||||+.+||++.|++||+.|+++|+|++++++|||+++++++|.++..|+ +|++|+|+|+|+|+++ ++ ++++
T Consensus 379 vLrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~ 457 (863)
T TIGR02414 379 VIRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTV 457 (863)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999985 8999999999999975 23 4566
Q ss_pred EEeeccCCCCCCCceEEEEEEEEec--CCCc-----------eeeEEecCCccEEEcccccccccCCCCCCCCceEecCC
Q 008697 153 EQSQFLSSGSPGDGQWIVPITLCCG--SYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 219 (557)
Q Consensus 153 ~Q~rf~~~~~~~~~~W~iPl~~~~~--~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~ 219 (557)
+|.+....+......|.|||.+..- ++.. ...+.++++++++.++... .. -.+-++.+
T Consensus 458 ~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~------~~---p~~sl~r~ 528 (863)
T TIGR02414 458 RQSTPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIA------EK---PVPSLLRG 528 (863)
T ss_pred EEeCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCC------CC---CeeeecCC
Confidence 6664322223345679999999642 1211 1236678888888775321 11 23666788
Q ss_pred ceeeEEEEcCHHHHHHHHHHHhcCCCCHHhhH---HHHHHHH--HHH---HcCC-C-ChHHHHHHHHhcccCCChhhH--
Q 008697 220 QTGFYRVKYDKDLAARLGYAIEMKQLSETDRF---GILDDHF--ALC---MARQ-Q-TLTSLLTLMASYSEETEYTVL-- 287 (557)
Q Consensus 220 ~~gyyRV~Yd~~~~~~l~~~l~~~~i~~~~r~---~li~D~~--~la---~~g~-l-~~~~~l~l~~~l~~E~~~~vw-- 287 (557)
.+-+-++.|+... +.|...+..+. .+.+|. |-+..-. .++ ..|. + --..+++.+..+-.+.+--++
T Consensus 529 fsapv~l~~~~~~-~~l~~l~~~d~-d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 606 (863)
T TIGR02414 529 FSAPVNLEYPYSD-EDLLLLLAHDS-DPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFK 606 (863)
T ss_pred CCceEEEeCCCCH-HHHHHHHhhCC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 8888888776322 22233333221 233332 2221111 111 1232 1 123555665543322222222
Q ss_pred HHHHH--HHHHHHhhhcccCh--------hHHHHHHHHHHHHhHHHHHHhCCcc---CCCCCHHHHHHHHHHHHHHHhcC
Q 008697 288 SNLIT--ISYKIGRIAADARP--------ELLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLG 354 (557)
Q Consensus 288 ~~~~~--~l~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g 354 (557)
..++. ....|...+..-++ .....+..-++..+..+|+++.-.. ...+..-.+.||..+|.+++..+
T Consensus 607 a~~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~ 686 (863)
T TIGR02414 607 ALLLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAAD 686 (863)
T ss_pred HHHhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 22211 00111111100111 1223334444455566666653211 11223456789999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHH
Q 008697 355 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 434 (557)
Q Consensus 355 ~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll 434 (557)
.++..+.|.+.|++- . ..--|-+.+.+.+..+....++..+...++++.....-+|=-.+.| .++.+..+
T Consensus 687 ~~~~~~~~~~~~~~a-----~---~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa--~~~~~~~~ 756 (863)
T TIGR02414 687 DAEIRNLALEQFKSA-----D---NMTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQA--TSPRPDTL 756 (863)
T ss_pred ChhHHHHHHHHHHhC-----C---CHHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHh--CCCcccHH
Confidence 888888998888642 1 1223455566555443111123455566666665555555555555 44455566
Q ss_pred HHHHHHhhcc
Q 008697 435 LEVLNFLLSS 444 (557)
Q Consensus 435 ~~~L~~~l~~ 444 (557)
.++-.+.-++
T Consensus 757 ~~v~~l~~h~ 766 (863)
T TIGR02414 757 ERVKALLQHP 766 (863)
T ss_pred HHHHHHhcCC
Confidence 6655554444
No 6
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=4.5e-31 Score=294.33 Aligned_cols=419 Identities=20% Similarity=0.233 Sum_probs=252.4
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhC-Cchh-hHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLF-PEWK-IWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGAS 78 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~-p~~~-~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~ 78 (557)
|+||+|+|||||||+|++........ +.+. +...... ...++..|+.+.+|||... +..++..+|+.++|.||++
T Consensus 315 ~~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l-~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~ 391 (875)
T PRK14015 315 CRDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVL-RAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAE 391 (875)
T ss_pred ecchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHH
Confidence 68999999999999999877665543 2221 1111111 1145667888888998643 4567889999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEe----CC--EEEE
Q 008697 79 VIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK----EE--KLEL 152 (557)
Q Consensus 79 vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~----~~--~~~i 152 (557)
|||||+..||++.|++||+.|+++|+|++++++|||+++++++|.++.+|+ +|++|+|+|+|+|+++ ++ ++++
T Consensus 392 vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl 470 (875)
T PRK14015 392 VIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTL 470 (875)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 999999999999999999999999999999999999999999999999986 8999999999999975 23 3566
Q ss_pred EEeeccCCCCCCCceEEEEEEEEec-C-CCc----------eeeEEecCCccEEEcccccccccCCCCCCCCceEecCCc
Q 008697 153 EQSQFLSSGSPGDGQWIVPITLCCG-S-YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQ 220 (557)
Q Consensus 153 ~Q~rf~~~~~~~~~~W~iPl~~~~~-~-~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~ 220 (557)
+|......+......|.|||.+..- . +.. ...+.++++++++.++... .. -.+-++.+.
T Consensus 471 ~Q~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~f 541 (875)
T PRK14015 471 SQSTPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGF 541 (875)
T ss_pred EEeCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCC
Confidence 6665432333455689999999642 1 211 2246788888888875321 11 235677888
Q ss_pred eeeEEEEcCHHHHHHHHHHHhcCCCCHHhhH---HHHHH-HHH-HHHc-CC-CC-hHHHHHHHHhcccCC--ChhhHHHH
Q 008697 221 TGFYRVKYDKDLAARLGYAIEMKQLSETDRF---GILDD-HFA-LCMA-RQ-QT-LTSLLTLMASYSEET--EYTVLSNL 290 (557)
Q Consensus 221 ~gyyRV~Yd~~~~~~l~~~l~~~~i~~~~r~---~li~D-~~~-la~~-g~-l~-~~~~l~l~~~l~~E~--~~~vw~~~ 290 (557)
+.+-++.|+.. -+.|..++..+. .+.+|. |-+.. ... ++.. |. +. ...+++.+..+-.+. +...-..+
T Consensus 542 sapv~~~~~~~-~~~l~~l~~~d~-d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~ 619 (875)
T PRK14015 542 SAPVKLEYDYS-DEDLLFLMAHDS-DPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAEL 619 (875)
T ss_pred CCcEEEeCCCC-HHHHHHHHhhCC-ChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 88888877632 223333333221 233332 22211 111 1111 22 11 234555555432222 32222222
Q ss_pred HH--HHHHHHhhhcccCh--------hHHHHHHHHHHHHhHHHHHHhCCcc---CCCCCHHHHHHHHHHHHHHHhcCCHH
Q 008697 291 IT--ISYKIGRIAADARP--------ELLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHKE 357 (557)
Q Consensus 291 ~~--~l~~l~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~il~~ac~~g~~~ 357 (557)
+. ....|...+..-++ .....+..-+...+..+|+++.-.. ...+..-.+.||..+|.+++..+.++
T Consensus 620 l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~ 699 (875)
T PRK14015 620 LTLPSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEE 699 (875)
T ss_pred ccCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChh
Confidence 21 00111111100011 1222233334444555566653211 01233456889999999999998888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHH
Q 008697 358 TLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEV 437 (557)
Q Consensus 358 c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~ 437 (557)
..+.|.+.|+.- . ..--|-+.+...+.......++..+...++++.....-+|=-.+.|. +..++.+.++
T Consensus 700 ~~~~~~~~~~~a-----~---~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~--~~~~~~~~~v 769 (875)
T PRK14015 700 AAELAEAQFDQA-----D---NMTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQAT--SPAPDTLERV 769 (875)
T ss_pred HHHHHHHHHhhC-----C---CHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhC--CCCcCHHHHH
Confidence 888888888642 0 11234455555555331111234555566666655555555555554 4445455555
Q ss_pred HHHhhcc
Q 008697 438 LNFLLSS 444 (557)
Q Consensus 438 L~~~l~~ 444 (557)
-.+.-++
T Consensus 770 ~~l~~hp 776 (875)
T PRK14015 770 RALMQHP 776 (875)
T ss_pred HHHhcCC
Confidence 5544444
No 7
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.92 E-value=1.9e-25 Score=242.02 Aligned_cols=144 Identities=24% Similarity=0.425 Sum_probs=115.0
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhh-HHHHHH-HhH-hhhhhcccCCCCCeeeecCCcc--cccccccccccch
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKI-WTQFLD-ECT-EGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRK 75 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~-~~~f~~-~~~-~al~~D~~~~s~pi~~~~~~~~--~i~~~Fd~i~Y~K 75 (557)
|+||+|+|||||||+|+++++++.++|++.. ...++. ... .++ +.+..++|+...+.+.. +++..|+.++|.|
T Consensus 298 ~~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~K 375 (601)
T TIGR02411 298 NCSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEK 375 (601)
T ss_pred cCCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhh
Confidence 6899999999999999999999999998642 222221 111 222 22344566655543333 6789999999999
Q ss_pred hhHHHHHHHHhhC-HHHHHHHHHHHHHHhcCCCCChHHHHHHHHhcc-----CCcHHHH-HhhhccCCCcceEEEEEe
Q 008697 76 GASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 146 (557)
Q Consensus 76 ga~vl~Ml~~~iG-~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~-----~~~~~~~-~~~W~~q~G~P~v~v~~~ 146 (557)
|+++||||+..|| ++.|++||+.|+++|+|++++++|||++|.+.. +.++..+ |+.|++++|+|.+.+..+
T Consensus 376 Ga~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 376 GFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 9999999999999 999999999999999999999999999998763 2456666 899999999999887644
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=99.57 E-value=4.2e-15 Score=150.96 Aligned_cols=141 Identities=26% Similarity=0.439 Sum_probs=111.5
Q ss_pred CCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhH-hhh--hhcccCCCCCeeeecCCc--ccccccccccccchhh
Q 008697 3 WWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGL--RLDGLAESHPIEVEVNHT--GEIDEIFDAISYRKGA 77 (557)
Q Consensus 3 WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~-~al--~~D~~~~s~pi~~~~~~~--~~i~~~Fd~i~Y~Kga 77 (557)
-|++.||||||++|+|..++..++++- ..+|-.-.. ..+ .+|.+..+||.+.-+.+. .+.+.+|..+.|.||.
T Consensus 309 sWehfWLNEGfTvylErrI~g~~~g~~--~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~ 386 (613)
T KOG1047|consen 309 SWEHFWLNEGFTVYLERRIVGRLYGEA--YRQFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGF 386 (613)
T ss_pred ccchhhhcccchhhhhhhhhhhhcchh--HHHHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhh
Confidence 599999999999999999999999863 223322111 111 357777888876654322 4667899999999999
Q ss_pred HHHHHHHHhhC-HHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCC----cH--HHHHhhhccCCCcceEEEEE
Q 008697 78 SVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVKV 145 (557)
Q Consensus 78 ~vl~Ml~~~iG-~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~----~~--~~~~~~W~~q~G~P~v~v~~ 145 (557)
++|+-|+..+| ++.|...||.|+++|+|++..++||.+.|-+.... ++ .-.++.|++.+|+|-+....
T Consensus 387 ~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~~ 461 (613)
T KOG1047|consen 387 ALLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPNF 461 (613)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCCc
Confidence 99999999999 89999999999999999999999999999876543 21 23489999999999876543
No 9
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=99.27 E-value=2.5e-12 Score=134.72 Aligned_cols=76 Identities=49% Similarity=0.993 Sum_probs=71.7
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhH-hhhhhcccCCCCCeeeecCCcccccccccccccchh
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 76 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~-~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kg 76 (557)
|+||+|+|||||||+|++++++++++|++.+++.|..+.. .+|..|+..++|||..++.++.++..+||.++|.||
T Consensus 314 ~~~w~d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 314 PKWWSDLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp ESSGGGHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred cccchhhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 5899999999999999999999999999999888888755 999999999999999888999999999999999998
No 10
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=97.88 E-value=1.3e-05 Score=69.32 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=54.0
Q ss_pred CChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhHHHHHH
Q 008697 4 WTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRML 83 (557)
Q Consensus 4 W~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~vl~Ml 83 (557)
....|++||||+|++... .+ .+......++..+...+-+++..... ....++...|.+|.+++++|
T Consensus 47 ~~~~W~~EG~A~y~~~~~----~~------~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~Y~~~~~~~~~L 112 (128)
T PF13485_consen 47 NAPRWFNEGLAEYVEGRI----ED------EFDEDLKQAIESGSLPPLEPLNSSFD----FSWEDDSLAYYQGYLFVRFL 112 (128)
T ss_pred cCchHHHHHHHHHHhcCc----cc------hhHHHHHHHHHcCCCCChHHHhcccc----ccccccccHHHHHHHHHHHH
Confidence 456899999999999431 11 11111223444444444444432211 14556678999999999999
Q ss_pred HHhhCHHHHHHHHHHH
Q 008697 84 QNYLGAECFQRSLASY 99 (557)
Q Consensus 84 ~~~iG~~~F~~gl~~y 99 (557)
....|++.|++.++.|
T Consensus 113 ~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 113 EEKYGREKFKAFLREY 128 (128)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999876
No 11
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=96.92 E-value=0.0044 Score=69.41 Aligned_cols=127 Identities=16% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhHhhhhhcc----cCCCCCeeeecC--------------Cccc
Q 008697 2 EWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDG----LAESHPIEVEVN--------------HTGE 63 (557)
Q Consensus 2 ~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~~al~~D~----~~~s~pi~~~~~--------------~~~~ 63 (557)
.-|+|.||-+|.|.|+..+++.+++|.....-+.-.+.-....+|- ...+.|+...-. +..-
T Consensus 361 ~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~k~~~~~~~~lh~~~r~~~~ 440 (1180)
T KOG1932|consen 361 VDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSMKFKLKGPFHLHISIRHLHT 440 (1180)
T ss_pred cchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcchhhcccCcceeeecccceee
Confidence 3589999999999999999999999854321111011113333332 111224432111 1111
Q ss_pred ccccccccccchhhHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEE
Q 008697 64 IDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISV 143 (557)
Q Consensus 64 i~~~Fd~i~Y~Kga~vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v 143 (557)
.+..|..---.|+..+.+|+++.+|.+-|.+-.++-+.. ++...++.+++.|....|+|++.+
T Consensus 441 ~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~~-----------------~~~~~~k~~~~~Wv~~~g~~~~r~ 503 (1180)
T KOG1932|consen 441 LSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLEL-----------------ASKMLLKSFFQTWVYGLGVPILRL 503 (1180)
T ss_pred cChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHh-----------------hhhhHHHHHHHHHHhccCCeeEEE
Confidence 111111122358889999999999998887766553322 222235788899999999998887
Q ss_pred EE
Q 008697 144 KV 145 (557)
Q Consensus 144 ~~ 145 (557)
..
T Consensus 504 ~~ 505 (1180)
T KOG1932|consen 504 GQ 505 (1180)
T ss_pred EE
Confidence 63
No 12
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=96.22 E-value=1.7 Score=44.82 Aligned_cols=248 Identities=17% Similarity=0.153 Sum_probs=115.0
Q ss_pred EEEEEEeeccCCCCCCCceEEEEEEEEe-c-CCCc-----eeeEEecCCccEEEcccccccccCCCCCCCCceEecCCce
Q 008697 149 KLELEQSQFLSSGSPGDGQWIVPITLCC-G-SYDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 221 (557)
Q Consensus 149 ~~~i~Q~rf~~~~~~~~~~W~iPl~~~~-~-~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 221 (557)
+++++|+.-...+......|.|||.+.. + .+.. ...+.+++.++++.+.+... . -..-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~~-------~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVSE-------K--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES---S-----------EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCCC-------C--ceeehhcCcc
Confidence 4788898754445455678999999954 2 2221 23467888888888754211 1 3566788999
Q ss_pred eeEEEEcCHHHHHHHHHHHhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHhhh
Q 008697 222 GFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIA 301 (557)
Q Consensus 222 gyyRV~Yd~~~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~~~ 301 (557)
.+.++.|+- .-+.|...+.++. ++.+|..-...++.- ..+..+.-........+=...+ ..+..++
T Consensus 77 APV~l~~~~-s~~eL~~L~~~D~-D~FnRWdA~Q~L~~~---------~l~~~~~~~~~~~~~~~~~~~i---~a~~~~L 142 (367)
T PF11940_consen 77 APVKLEYDY-SDEELAFLAAHDS-DPFNRWDAAQTLATR---------ILLALIADKQAGKPLALSAALI---EAFRALL 142 (367)
T ss_dssp SSSEEE-----HHHHHHHHHH-S-SHHHHHHHHHHHHHH---------HHHHHHHHHHHTHH----HHHH---HHHHHHH
T ss_pred cceEecCCC-CHHHHHHHHHcCC-ChhHHHHHHHHHHHH---------HHHHHHHHhhcCCCCCccHHHH---HHHHHHH
Confidence 999999862 2233333333332 366665433332221 1222222222111111111222 2233332
Q ss_pred cccChhHHHHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCCh-
Q 008697 302 ADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPP- 380 (557)
Q Consensus 302 ~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~- 380 (557)
.+ ......|+..+..+ |-...|.-....-+.......|..+....+.-- ..+-..++++.-.. .....++
T Consensus 143 ~d--~~~d~a~~A~~L~L--Ps~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l----~~~l~~~y~~~~~~-~~y~~~~~ 213 (367)
T PF11940_consen 143 AD--DDLDPAFKALLLTL--PSESELAEQMENIDPDAIHAAREALRRALAQAL----RDELLALYQALAAT-GPYSPDAE 213 (367)
T ss_dssp H---SSS-HHHHHHHTS-----HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHT----HHHHHHHHHHTHHT-TTTT-SHH
T ss_pred cC--CCCCHHHHHHHccC--CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcccC-CCCCCCHH
Confidence 22 22334455555443 444444432212122223344544444333211 12223334443111 1223343
Q ss_pred -----hhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCH
Q 008697 381 -----DIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDV 431 (557)
Q Consensus 381 -----dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~ 431 (557)
-+|..++.+.+..+ ++...+...+.|+++++.++|...|.+|..+..+
T Consensus 214 ~~g~RaLkn~~L~yL~~~~---~~~~~~la~~qy~~A~nMTD~laAL~~l~~~~~~ 266 (367)
T PF11940_consen 214 AAGRRALKNLCLSYLAAAD---DPEAAELAQEQYKSADNMTDRLAALSALVNSDSP 266 (367)
T ss_dssp HHHHHHHHHHHHHHHHHCT---CTHHHHHHHHHHHHSSSHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCH
Confidence 26777777777654 6667788999999999999999999999887543
No 13
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.91 E-value=0.055 Score=56.53 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=69.4
Q ss_pred cchhhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEE
Q 008697 73 YRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKV 145 (557)
Q Consensus 73 Y~Kga~vl~Ml~~~i-----G~~~F~~gl~~yl~~~~~--~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~ 145 (557)
|.||+.|=-+|...| |+..+...++..-+.+.. ...+++|+-..+++++|.++..|++..++..--|.+.--.
T Consensus 357 Y~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l 436 (558)
T COG3975 357 YQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLL 436 (558)
T ss_pred hhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhh
Confidence 899999988888777 466677788888888776 6679999999999999999999999999998877765433
Q ss_pred eCCEEEEEEeec
Q 008697 146 KEEKLELEQSQF 157 (557)
Q Consensus 146 ~~~~~~i~Q~rf 157 (557)
....+++++++.
T Consensus 437 ~~~gL~~~~~~~ 448 (558)
T COG3975 437 ERFGLTFTPKPR 448 (558)
T ss_pred hhcceEEEecCC
Confidence 345677777764
No 14
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.82 E-value=8.2 Score=42.60 Aligned_cols=186 Identities=19% Similarity=0.217 Sum_probs=104.0
Q ss_pred cCCCCHHhhHHHHHHHHHHHH-cCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHhhhcccChh----HHHHHHHHH
Q 008697 242 MKQLSETDRFGILDDHFALCM-ARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPE----LLDYLKQFF 316 (557)
Q Consensus 242 ~~~i~~~~r~~li~D~~~la~-~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~ 316 (557)
.++++..++++++.-+.+.+. ...--.+.+++|++.=....+..++.+++-.+..+.+......+. ....+.+|+
T Consensus 368 ~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l 447 (574)
T smart00638 368 NKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYL 447 (574)
T ss_pred cCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 456777788888776665542 222223334444433223445667777776566665544322221 123444444
Q ss_pred HHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCC
Q 008697 317 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSA 396 (557)
Q Consensus 317 ~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~ 396 (557)
.+.++...++ + +. .-+...+..++-.|++..+.. +..++.+ ....|+.+|..+.-+.-+.+..
T Consensus 448 ~~~l~~~~~~-------~-~~---~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 448 HELLQQAVSK-------G-DE---EEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred HHHHHHHHhc-------C-Cc---hheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHHHHHHHHHHHHHh
Confidence 4444433221 1 11 123467788888999876543 4444442 2456778886554432222101
Q ss_pred CCHHHHHHHHHHHhcCCCHHH-HHHH-HHHhcCCCCHHHHHHHHHHhhcc
Q 008697 397 SDRSGYESLLRVYRETDLSQE-KTRI-LSSLASCPDVNIVLEVLNFLLSS 444 (557)
Q Consensus 397 ~~~~~~~~l~~~y~~s~~~~e-k~~l-l~aLac~~d~~ll~~~L~~~l~~ 444 (557)
.....-+.++..|.+...+.| |... +..|-|-++...++++.+.+..+
T Consensus 511 ~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 511 DPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred CchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 156677889999998776666 5554 44455559999999988877553
No 15
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=88.88 E-value=2.1 Score=43.68 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=71.7
Q ss_pred ChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhHhhhhhc-ccCCCCCeeeecCCcccccccccccccchhhHHHHHH
Q 008697 5 THLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRML 83 (557)
Q Consensus 5 ~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~~al~~D-~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~vl~Ml 83 (557)
.|+|||||+|.-+|........|..+-.. ......+..+ +....+.+..- .... -...+|....+++.-|
T Consensus 166 ~dtWLnE~lS~~aEdl~s~~~~~~~n~i~---d~R~~~y~~~~~~~~~~~l~~w-~~~g-----~~l~sYs~s~~Fg~~L 236 (366)
T PF10460_consen 166 MDTWLNEMLSMSAEDLYSSKIDPGYNNIR---DSRIPYYNNYTSGNYNCSLTAW-SSFG-----DSLASYSSSYSFGAYL 236 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCcccCccc---cccHHHHhhccccCCCcceeec-CCCc-----cccccchhHHHHHHHH
Confidence 48999999999999998877754321100 0000111111 11112223211 1111 2246799999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhcc--CCcHHHHHhhhccCC
Q 008697 84 QNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGS--GEPVNKLMNSWTKQK 136 (557)
Q Consensus 84 ~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~--~~~~~~~~~~W~~q~ 136 (557)
....|.+.|++-|.. -...+..+..++..+.. +.++.++|..|...-
T Consensus 237 ~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 237 YRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred HHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888899887776642 13467777777765443 568999999997766
No 16
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=84.65 E-value=4.7 Score=31.66 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHH
Q 008697 340 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 419 (557)
Q Consensus 340 ~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~ 419 (557)
..+|..++..++..+.+..+....+ .+.+ -++.+|..+.-+..+.| +.+....+.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~----~l~d-----~~~~vr~~a~~aL~~i~---~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIE----LLKD-----EDPMVRRAAARALGRIG---DPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHH----HHTS-----SSHHHHHHHHHHHHCCH---HHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHH----HHcC-----CCHHHHHHHHHHHHHhC---CHHHHHHHHHHHcCCCcHHHHH
Confidence 4567788888888887755444443 3342 25688888877766665 7778888888888877766678
Q ss_pred HHHHHhc
Q 008697 420 RILSSLA 426 (557)
Q Consensus 420 ~ll~aLa 426 (557)
.++.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888875
No 17
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=78.73 E-value=15 Score=38.04 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=23.6
Q ss_pred hhHhHHHHHHHHHHhhhCCchhhHHHHHHH
Q 008697 9 LNEGFATWVSYLAADSLFPEWKIWTQFLDE 38 (557)
Q Consensus 9 LnEgfAty~~~~~~~~~~p~~~~~~~f~~~ 38 (557)
+|||-|||..|.++.++|.+-...+.++.+
T Consensus 270 MNEGWAtfWHytiln~lydE~~~~~~~~lE 299 (495)
T COG2719 270 MNEGWATFWHYTILNHLYDEGKLTERAMLE 299 (495)
T ss_pred hhhhHHHHHHHHHHHhhhhhcccChHHHHH
Confidence 799999999999999988776554444443
No 18
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=76.13 E-value=1.1 Score=38.65 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=14.4
Q ss_pred hhhhHhHHHHHHHHHH
Q 008697 7 LWLNEGFATWVSYLAA 22 (557)
Q Consensus 7 lWLnEgfAty~~~~~~ 22 (557)
+|+.||||+|||....
T Consensus 28 ~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 28 RWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHhHHHHcCCCcc
Confidence 7999999999998765
No 19
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.33 E-value=34 Score=38.12 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHH-HHHH
Q 008697 343 RGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRI 421 (557)
Q Consensus 343 r~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~e-k~~l 421 (557)
+...|..++-.|++..+. .+..++.+. ...|..+|..+.-+.-+....-.....+.++..|.+.+...| |...
T Consensus 507 ~~~~LkaLgN~g~~~~i~----~l~~~i~~~--~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA 580 (618)
T PF01347_consen 507 KIVYLKALGNLGHPESIP----VLLPYIEGK--EEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAA 580 (618)
T ss_dssp HHHHHHHHHHHT-GGGHH----HHHTTSTTS--S-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHhhccCCchhhH----HHHhHhhhc--cccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHH
Confidence 345667777778775433 344455543 267888887665433211111145678889999999887776 5444
Q ss_pred HHH-hcCCCCHHHHHHHHHHhhc
Q 008697 422 LSS-LASCPDVNIVLEVLNFLLS 443 (557)
Q Consensus 422 l~a-Lac~~d~~ll~~~L~~~l~ 443 (557)
+.. |-|-+.+..++++.+.+-.
T Consensus 581 ~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 581 YLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHT---HHHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHhh
Confidence 444 4455888889888776643
No 20
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=66.66 E-value=1.1e+02 Score=31.05 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=69.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 008697 346 IFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSL 425 (557)
Q Consensus 346 il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aL 425 (557)
|-.++++.+..+-.....+.+. .+|+... ..+|..+.+.+ =+++.-+.+.++...+.+......+++||
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~---------~lP~~vl-~aL~~~LEh~~-l~~~l~~~l~~~~~~~~d~~~~~a~lRAl 240 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALP---------HLPPEVL-YALCGCLEHQP-LPDKLAEALLERLEQAPDLELLSALLRAL 240 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHh---------hCChHHH-HHHHHHhcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5667777776653222222221 2455443 36788888752 35677888999998887888889999999
Q ss_pred cCCCCHHHHHHHHHHhhccc-cccccchhhhh
Q 008697 426 ASCPDVNIVLEVLNFLLSSE-VRSQDAVYGLA 456 (557)
Q Consensus 426 ac~~d~~ll~~~L~~~l~~~-i~~qd~~~~~~ 456 (557)
+++.........++.++... ....|+..+++
T Consensus 241 s~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IA 272 (340)
T PF12069_consen 241 SSAPASDLVAILIDALLQSPRLCHPEVLIAIA 272 (340)
T ss_pred cCCCchhHHHHHHHHHhcCcccCChHHHHHHH
Confidence 99999988888788888654 56667766665
No 21
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=64.35 E-value=78 Score=27.77 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=43.2
Q ss_pred CCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCH-HHHHHHHHHhcCCCCHHHHHHHHHHhhcc
Q 008697 375 TPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLS-QEKTRILSSLASCPDVNIVLEVLNFLLSS 444 (557)
Q Consensus 375 ~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~-~ek~~ll~aLac~~d~~ll~~~L~~~l~~ 444 (557)
...|.++-|..+....+|-- |-.+..+-...... ..|..+++.|++++++++ .-+++..+.+
T Consensus 78 ~~~I~~ehR~~l~pvvlRIL-------ygk~~~~~~~~~~~~~rR~aIL~~L~~l~~~El-~~Fl~l~~~p 140 (141)
T PF07539_consen 78 SSVIEEEHRPELMPVVLRIL-------YGKMQSRKGSGSKKASRRAAILRFLAGLSEEEL-GLFLDLMLEP 140 (141)
T ss_pred cCCCCHHHHhHHHHHHHHHH-------HHHHhhcCCCCCcchHHHHHHHHHHhCCCHHHH-HHHHHHHhcc
Confidence 34599999999999888842 55555543333333 568889999999988764 5677766543
No 22
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.59 E-value=42 Score=37.25 Aligned_cols=100 Identities=18% Similarity=0.284 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHcCCCCCCCChhhH-HHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 008697 334 GESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIR-KAAYVAVMQKVSASDRSGYESLLRVYRE 411 (557)
Q Consensus 334 ~~~~~~~~lr~~il~~ac~-~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr-~~vyc~~~~~~~~~~~~~~~~l~~~y~~ 411 (557)
.|+...+..|+..+.+||. +|..+ .|..+.++.+.+. +|-+| .-+|..++.+...|+.....+|+.-.-+
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrqe---~Ad~lI~el~~dk-----dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQE---DADPLIKELLRDK-----DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhhh---hhHHHHHHHhcCC-----chhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 3555667889988888886 35443 4555555555432 44444 5688888888655667778888876555
Q ss_pred CCCHHHHHHHHHHhc--CCCCHHHHHHHHHHh
Q 008697 412 TDLSQEKTRILSSLA--SCPDVNIVLEVLNFL 441 (557)
Q Consensus 412 s~~~~ek~~ll~aLa--c~~d~~ll~~~L~~~ 441 (557)
..+.+-|+...-||| |++||+.+-+++.++
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~~~s~V~lL 597 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLL 597 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhhchHHHHHH
Confidence 556666888888888 889999888877664
No 23
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=60.01 E-value=1.5e+02 Score=30.61 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCC
Q 008697 335 ESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL 414 (557)
Q Consensus 335 ~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~ 414 (557)
+..-.+.||..++.+++..+.+...+.|.+.|+.- + ..--|-..+...+.......++..+..+++++....
T Consensus 213 ~~~g~RaLkn~~L~yL~~~~~~~~~~la~~qy~~A--~------nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~L 284 (367)
T PF11940_consen 213 EAAGRRALKNLCLSYLAAADDPEAAELAQEQYKSA--D------NMTDRLAALSALVNSDSPEREEALEDFYERWKDDPL 284 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHCTCTHHHHHHHHHHHHS--S------SHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC--C------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChH
Confidence 34457889999999999999999999999888752 0 112344455444443211123445666666766544
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhccccccccchhhhh-cCcc-cHHHHHHHHHHhHHHHHHHhCC
Q 008697 415 SQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGS 482 (557)
Q Consensus 415 ~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~i~~qd~~~~~~-~~~~-~~~~~w~fl~~N~~~i~~~~~~ 482 (557)
.-+|=-.+.|. ++.+..+.++-.+.-++. |. .||. .|.++-.|...|...++..-|.
T Consensus 285 V~dKWFalQA~--~~~~~~l~~V~~L~~Hp~---------F~~~NPNrvRaLig~Fa~~N~~~FH~~dG~ 343 (367)
T PF11940_consen 285 VMDKWFALQAS--SPSPDTLERVKKLMQHPA---------FDLKNPNRVRALIGAFAQANPVQFHAADGS 343 (367)
T ss_dssp HHHHHHHHHHT----STTHHHHHHHHTTSTT---------TTTT-HHHHHHHHHHHHHC-HHHHT-TTSH
T ss_pred HHHHHHHHHhC--CCCccHHHHHHHHhcCCC---------CCCCCCcHHHHHHHHHHhcChhhhcCCCCc
Confidence 44555555554 444445666555544443 22 3443 3445555555666666655443
No 24
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=53.84 E-value=1.1e+02 Score=30.67 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhcCh--------hhHHHHHHHh
Q 008697 504 REVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE--------GHLAEAVKEL 552 (557)
Q Consensus 504 ~~~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~--------~~~~~~~~~~ 552 (557)
-.++.|.+..+...+.+.+++-+++|+.|.+|+++.|+. ..|..|.++.
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~ 284 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESEL 284 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhc
Confidence 568888888776778999999999999999999998876 5588888776
No 25
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.37 E-value=1.3e+02 Score=24.96 Aligned_cols=44 Identities=25% Similarity=0.479 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHHHHHhCCCcchhhHHHhhccCCCCHHHHHHHHHHH
Q 008697 465 AWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFF 510 (557)
Q Consensus 465 ~w~fl~~N~~~i~~~~~~~~~l~~iv~~~~~~~~t~~~~~~~~~F~ 510 (557)
.|+|+++||..|..-++. ....+..-+.+.+.+.++++++.+=+
T Consensus 1 ~~~~~~~~w~ii~a~~~~--~~~~~~~~l~~~~a~~~~~~~l~~~~ 44 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGI--AGGIFWLWLRRTYAKREDIEKLEERL 44 (106)
T ss_pred ChHHHHhCcHHHHHHHHH--HHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 489999999998877642 23334444566778888887774433
No 26
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=45.23 E-value=9.5 Score=32.57 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.3
Q ss_pred ChhhhhHhHHHHHHHHHHhh
Q 008697 5 THLWLNEGFATWVSYLAADS 24 (557)
Q Consensus 5 ~dlWLnEgfAty~~~~~~~~ 24 (557)
+.||+-|||++|++...+-.
T Consensus 38 ~~LWv~EG~T~Y~~~l~l~R 57 (122)
T PF05299_consen 38 ELLWVYEGFTSYYGDLLLVR 57 (122)
T ss_pred CCEeeeeCcHHHHHHHHHHH
Confidence 46899999999999988754
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=44.81 E-value=61 Score=25.05 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=40.7
Q ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhc
Q 008697 379 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS 443 (557)
Q Consensus 379 ~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~ 443 (557)
++.+|..+.-...+.+ +.+....+.+.. ++.++.-|...+.+|+...++..+..+.+.+.+
T Consensus 13 ~~~vr~~a~~~L~~~~---~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 13 DPQVRAEAARALGELG---DPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQD 73 (88)
T ss_dssp SHHHHHHHHHHHHCCT---HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcC---CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcC
Confidence 5566655443333433 566677777777 567777888899999988888776666555444
No 28
>PRK09687 putative lyase; Provisional
Probab=36.05 E-value=4.4e+02 Score=26.02 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHhcccCCChhhHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHh
Q 008697 273 TLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALAL 352 (557)
Q Consensus 273 ~l~~~l~~E~~~~vw~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~ 352 (557)
.|+..| ...+..|+..+...|..+.. ++....+.+.+ .+.+...|......++.
T Consensus 27 ~L~~~L-~d~d~~vR~~A~~aL~~~~~------~~~~~~l~~ll-------------------~~~d~~vR~~A~~aLg~ 80 (280)
T PRK09687 27 ELFRLL-DDHNSLKRISSIRVLQLRGG------QDVFRLAIELC-------------------SSKNPIERDIGADILSQ 80 (280)
T ss_pred HHHHHH-hCCCHHHHHHHHHHHHhcCc------chHHHHHHHHH-------------------hCCCHHHHHHHHHHHHh
Q ss_pred cCCHHHH-HHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHH----HHHHHHHhcCCCHHHHHHHHHHhcC
Q 008697 353 LGHKETL-NEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGY----ESLLRVYRETDLSQEKTRILSSLAS 427 (557)
Q Consensus 353 ~g~~~c~-~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~----~~l~~~y~~s~~~~ek~~ll~aLac 427 (557)
+|.+... ..+...+...+. ..-++.+|..+.-+....+ .....| -..+.......++.-|.....|||+
T Consensus 81 lg~~~~~~~~a~~~L~~l~~----~D~d~~VR~~A~~aLG~~~--~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 81 LGMAKRCQDNVFNILNNLAL----EDKSACVRASAINATGHRC--KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSV 154 (280)
T ss_pred cCCCccchHHHHHHHHHHHh----cCCCHHHHHHHHHHHhccc--ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhc
Q ss_pred CCCHHHHHHHHHHhhccc
Q 008697 428 CPDVNIVLEVLNFLLSSE 445 (557)
Q Consensus 428 ~~d~~ll~~~L~~~l~~~ 445 (557)
.+++..+.-++..+-++.
T Consensus 155 ~~~~~ai~~L~~~L~d~~ 172 (280)
T PRK09687 155 INDEAAIPLLINLLKDPN 172 (280)
T ss_pred cCCHHHHHHHHHHhcCCC
No 29
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.94 E-value=1.9e+02 Score=31.38 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHcCCCCCCCChhhH-HHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 008697 334 GESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIR-KAAYVAVMQKVSASDRSGYESLLRVYRE 411 (557)
Q Consensus 334 ~~~~~~~~lr~~il~~ac~-~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr-~~vyc~~~~~~~~~~~~~~~~l~~~y~~ 411 (557)
+|+...+..|..-+.+|-. +|.+ +.|-.+.++.+.+ .++-+| .-+|..++.+...|+......++.---+
T Consensus 491 ~ETqhe~i~Rglgig~aLi~ygrq---e~add~I~ell~d-----~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avs 562 (926)
T COG5116 491 GETQHERIKRGLGIGFALILYGRQ---EMADDYINELLYD-----KDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVS 562 (926)
T ss_pred cchhhhhHHhhhhhhhhHhhhhhH---HHHHHHHHHHhcC-----chHHhhhccHHHHHHHHhcCCcchhHhhhheeecc
Confidence 4444556667666665443 3333 3444445554443 344455 4577777777645566667777765455
Q ss_pred CCCHHHHHHHHHHhc--CCCCHHHHHHHHHHhhc
Q 008697 412 TDLSQEKTRILSSLA--SCPDVNIVLEVLNFLLS 443 (557)
Q Consensus 412 s~~~~ek~~ll~aLa--c~~d~~ll~~~L~~~l~ 443 (557)
..+..-|+...-||| |++|+.++-+.++.+..
T Consensus 563 D~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~ 596 (926)
T COG5116 563 DGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSE 596 (926)
T ss_pred cCchHHHHHHHHheeeeEecCcchhhHHHHHhhh
Confidence 555556777777777 99999999998887654
No 30
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.90 E-value=3.6e+02 Score=27.63 Aligned_cols=117 Identities=16% Similarity=0.256 Sum_probs=65.4
Q ss_pred HhhHHHHHHHHH-HHHcCCCChHHHHHHHHhcccCCChh--------hHHHHH----HHHHHHHhhhcccChhHHH-HHH
Q 008697 248 TDRFGILDDHFA-LCMARQQTLTSLLTLMASYSEETEYT--------VLSNLI----TISYKIGRIAADARPELLD-YLK 313 (557)
Q Consensus 248 ~~r~~li~D~~~-la~~g~l~~~~~l~l~~~l~~E~~~~--------vw~~~~----~~l~~l~~~~~~~~~~~~~-~~~ 313 (557)
.++-|+|||+-. |..+.-++|..-|.|+.--.+|.-+. +|.-.- -.|..+...+. .++++.+ .|.
T Consensus 318 ~~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~-~~p~l~nll~d 396 (487)
T KOG2653|consen 318 DDKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQ-RNPDLANLLLD 396 (487)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHh-cCccHhhhccC
Confidence 358999999955 55666789999999987655554332 332110 01122222221 1232211 122
Q ss_pred HHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCCCCCChhhHHH
Q 008697 314 QFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 385 (557)
Q Consensus 314 ~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 385 (557)
.|+.+.+... +.-.| .++.+|..+|.+ +|...|+..|+.|.. ..+|+++..+
T Consensus 397 ~fF~~~v~~~---------------q~~wr-~vV~~a~~~gIptP~~st~Lafydgyr~----e~lpaNllQA 449 (487)
T KOG2653|consen 397 PFFAKAVEEA---------------QDSWR-RVVALAVEAGIPTPAFSTALAFYDGYRS----ERLPANLLQA 449 (487)
T ss_pred HHHHHHHHHH---------------HHHHH-HHHHHHHhcCCCChhHHHHHHHHhhhhh----hcCcHHHHHH
Confidence 2332222211 11223 355667777876 789999999998854 5789888664
No 31
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=28.46 E-value=8.9e+02 Score=27.28 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=14.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHH
Q 008697 78 SVIRMLQNYLGAECFQRSLASY 99 (557)
Q Consensus 78 ~vl~Ml~~~iG~~~F~~gl~~y 99 (557)
++-.|+..+.....+..++.-|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f 110 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELF 110 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHH
Confidence 4566777766655666666655
No 32
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=27.75 E-value=2.9e+02 Score=25.93 Aligned_cols=56 Identities=29% Similarity=0.592 Sum_probs=40.3
Q ss_pred ccccccchhhHHHHHHHH-hhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhh
Q 008697 68 FDAISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 131 (557)
Q Consensus 68 Fd~i~Y~Kga~vl~Ml~~-~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~ 131 (557)
+| -.|.-.|-+|.-|+. ..|+. |.+-|..=|++..| ..+++|..+ +|.+++++.+.
T Consensus 148 wd-~gY~~TA~FL~wle~~~~~~g-fV~~LN~~m~~~~y---~~~~~~~~l---~G~~v~~LW~e 204 (205)
T PF04450_consen 148 WD-DGYRTTARFLDWLEDNRYGKG-FVRRLNEAMRRDKY---SSDDFWKEL---LGKPVDELWAE 204 (205)
T ss_pred cc-cccHHHHHHHHHHHhcccCcc-HHHHHHHHHhhCCC---CcHhHHHHH---HCcCHHHHHhh
Confidence 44 578999999999998 65544 67777777777777 667777654 47777776543
No 33
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=24.83 E-value=2.9e+02 Score=20.65 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHh
Q 008697 499 SYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNEGHLAEAVKEL 552 (557)
Q Consensus 499 t~~~~~~~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~~~~~~~~~~~ 552 (557)
+...+.++..||.+.|.. ....+-+-|-......+..+.+.. |.+.|+.+
T Consensus 12 ~kK~i~~v~~FF~~DPlG--qkIa~l~kdw~~~~~~~r~KiR~~--L~ey~k~L 61 (64)
T PF05596_consen 12 VKKWIEEVRNFFYEDPLG--QKIAQLAKDWNEICQEVRKKIRAA--LAEYCKGL 61 (64)
T ss_pred HHHHHHHHHHHhccCchH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhh
Confidence 457789999999987643 222233333344444555544555 77777755
No 34
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.22 E-value=5.4e+02 Score=24.52 Aligned_cols=117 Identities=9% Similarity=0.013 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHHhHHHHHHhC
Q 008697 249 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 328 (557)
Q Consensus 249 ~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 328 (557)
-|.+++.-...+...|.++...+.+++..|-.|-+..|-..+....+.+......++.. .......+=+.+.-+..+ +
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~-~~~~ldLlP~~Ls~L~~~-~ 81 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNK-NGKWLDLLPKCLSALSAS-E 81 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--STTTTHHHHHHHHHHT--S
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcc-cchHHHHHHHHHHHHhcC-c
Confidence 46777777888889999999999999999999988888777776555544322211111 111112122222222111 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 008697 329 WDSKPGESHLDALLRGEIFTALALLGH-KETLNEASKRFH 367 (557)
Q Consensus 329 ~~~~~~~~~~~~~lr~~il~~ac~~g~-~~c~~~a~~~f~ 367 (557)
--...+....-...+..++.-.|...= +.|+-.-..+|+
T Consensus 82 ~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfr 121 (223)
T PF14675_consen 82 SINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFR 121 (223)
T ss_dssp --SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGG
T ss_pred ccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHh
Confidence 111122223345678888888887643 334434444554
No 35
>cd00244 AlgLyase Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond.
Probab=24.01 E-value=7.8e+02 Score=25.06 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc--CCCCCCCChhhH
Q 008697 306 PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA--DRTTPLLPPDIR 383 (557)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~--~~~~~~i~~dlr 383 (557)
++....+++.+.+++.-+....+-.+.....+.....--.+...+...|.++...++...|+.-.. ..+ ...|-++.
T Consensus 148 ~~d~~~i~~Wf~~~l~wl~s~~~~~e~~~~NNHgyWya~qVaa~A~~tg~~~l~~~a~~~~~~~~~QI~~D-GsqP~ELa 226 (339)
T cd00244 148 TEQAERIEKWFARVADQVVSDWSGLPLKKINNHSYWAAWSVMATGVATNRRDLFDWAVGEYKVAAGQVDED-GFLPNELK 226 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcCchhhccCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhccc-CCCcHHHh
Confidence 445667888888888876655443221111122234445778888888999999999887765322 112 24565554
Q ss_pred H----HHH-----------HHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHH
Q 008697 384 K----AAY-----------VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEV 437 (557)
Q Consensus 384 ~----~vy-----------c~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~ 437 (557)
. ..| |...+.- |.+-| ..+..+-...+=..++.++||+.+.+.
T Consensus 227 R~tRslhYs~FnL~al~~iA~lAe~~---GvDLw--------~~ng~sL~rl~~fvia~~~dP~~~~~~ 284 (339)
T cd00244 227 RRQRALAYHNYALPPLAMIAEFAQRN---GVDLR--------KENGGALHRLAKRVLAGVKDPDLFKEY 284 (339)
T ss_pred hhhhhhHHHhhhHHHHHHHHHHHHHc---CCCcc--------ccCcHHHHHHHHHHHhhccCcHHHHHh
Confidence 4 222 2222221 23333 333344444444567778888877654
No 36
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=23.54 E-value=64 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=22.3
Q ss_pred HHHhhCHHHHHHHHHHHHHHhcCCCCChHHH
Q 008697 83 LQNYLGAECFQRSLASYIKKYACSNAKTEDL 113 (557)
Q Consensus 83 l~~~iG~~~F~~gl~~yl~~~~~~na~~~dl 113 (557)
+..+||++.|.+-++.|+..+--.+.+-.++
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~~ 85 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLNDY 85 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGGH
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4567899999999999999987655554444
No 37
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=23.32 E-value=5.6e+02 Score=26.82 Aligned_cols=118 Identities=18% Similarity=0.267 Sum_probs=69.1
Q ss_pred HHhhHHHHHHHHHH-HHcCCCChHHHHHHHHhcccCCChh--------hHHHHH----HHHHHHHhhhcccChhHHH-HH
Q 008697 247 ETDRFGILDDHFAL-CMARQQTLTSLLTLMASYSEETEYT--------VLSNLI----TISYKIGRIAADARPELLD-YL 312 (557)
Q Consensus 247 ~~~r~~li~D~~~l-a~~g~l~~~~~l~l~~~l~~E~~~~--------vw~~~~----~~l~~l~~~~~~~~~~~~~-~~ 312 (557)
+-+|..+|+|+... ..+.-++|..-|.+++.-++|-.+- +|+..- ..|..|..-+ ...+++.. .+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af-~~~p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAF-DENPELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHH-hcCcchhhhhc
Confidence 57999999999664 4455579999999998877776543 232110 0112222211 11122211 12
Q ss_pred HHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCCCCCChhhHHH
Q 008697 313 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 385 (557)
Q Consensus 313 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~-~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 385 (557)
..|+.+++.. ...-+|. ++..|...|.+ +|...|...|+.|.. ..+|+++.++
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQA 444 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQA 444 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHHH
Confidence 2233333221 1223454 56667788886 799999999999965 4688887653
No 38
>PF09554 RE_HaeII: HaeII restriction endonuclease; InterPro: IPR019058 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes Type-2 restriction enzyme NgoBI, and HaeII. They recognise the double-stranded sequence RGCGCY and cleaves after C-5.
Probab=23.26 E-value=4.2e+02 Score=25.93 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=45.4
Q ss_pred HHHHHhhccccccccchhhhh-cCcccHHHHHHHHHHhHHHHHHHhCCCcchhhHHHhhccCCCCHHHHHHHHHHHhcCC
Q 008697 436 EVLNFLLSSEVRSQDAVYGLA-VSIEGRETAWKWLKDNWDHISKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRC 514 (557)
Q Consensus 436 ~~L~~~l~~~i~~qd~~~~~~-~~~~~~~~~w~fl~~N~~~i~~~~~~~~~l~~iv~~~~~~~~t~~~~~~~~~F~~~~~ 514 (557)
|+-+-++.+..-|-++..++. .|......+=.|+.+ ++..|++ -+.+.+..+...-...-++.++-..|-..
T Consensus 68 rfQD~lf~~NAmPPe~L~VLg~~Nrk~~GiVE~YIY~---kF~ek~~---qmssal~y~~~s~~~nF~L~efl~~Fw~E- 140 (338)
T PF09554_consen 68 RFQDDLFNDNAMPPEVLKVLGDENRKNNGIVEAYIYD---KFFEKHS---QMSSALQYCLNSDPENFQLSEFLNLFWNE- 140 (338)
T ss_pred hhhhhhhhcCCCCHHHHHHhhhhhccccccHHHHHHH---HHHHHHH---HHHHHHHHHHhCCcccccHHHHHHHHhhC-
Confidence 444455554433333444444 333222233334433 3344443 24556666554333445566666655543
Q ss_pred cchHHHHHHHHHHHHHH
Q 008697 515 KPYIARTLRQSIERVQI 531 (557)
Q Consensus 515 ~~~~~~~~~~~le~i~~ 531 (557)
+|..|++++..|.|-.
T Consensus 141 -pGlKRSiDKiYEIvvY 156 (338)
T PF09554_consen 141 -PGLKRSIDKIYEIVVY 156 (338)
T ss_pred -cchhhhHHHHHHHHHH
Confidence 5888999999887744
No 39
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.79 E-value=90 Score=22.78 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=11.8
Q ss_pred hhHhHHHHHHHHHHhh
Q 008697 9 LNEGFATWVSYLAADS 24 (557)
Q Consensus 9 LnEgfAty~~~~~~~~ 24 (557)
+||+||+|+-..-+..
T Consensus 34 FNESFasfLYGl~mna 49 (58)
T PF08653_consen 34 FNESFASFLYGLNMNA 49 (58)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999987665443
No 40
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=22.17 E-value=93 Score=22.59 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=19.3
Q ss_pred HHhhhccCCCcce---EEEEEeCCEEEEE
Q 008697 128 LMNSWTKQKGYPV---ISVKVKEEKLELE 153 (557)
Q Consensus 128 ~~~~W~~q~G~P~---v~v~~~~~~~~i~ 153 (557)
+--.|+.+.||.+ |+|+...|.++|+
T Consensus 28 L~G~WL~~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 28 LKGKWLEEAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred EchhhhHHhCCCCCCEEEEEEECCEEEEe
Confidence 3467999999866 6777777877764
No 41
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.87 E-value=5.2e+02 Score=27.22 Aligned_cols=91 Identities=22% Similarity=0.174 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHH
Q 008697 340 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 419 (557)
Q Consensus 340 ~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~ 419 (557)
..+|...+..++..+..++....... +.+ -++++|....+.....| +...|+-+...|.....+. +.
T Consensus 161 ~~Vra~A~raLG~l~~~~a~~~L~~a----l~d-----~~~~VR~aA~~al~~lG---~~~A~~~l~~~~~~~g~~~-~~ 227 (410)
T TIGR02270 161 ALVRAAALRALGELPRRLSESTLRLY----LRD-----SDPEVRFAALEAGLLAG---SRLAWGVCRRFQVLEGGPH-RQ 227 (410)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHH----HcC-----CCHHHHHHHHHHHHHcC---CHhHHHHHHHHHhccCccH-HH
Confidence 45678888888888887776654322 332 37789999999888876 7888988777676554443 34
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhc
Q 008697 420 RILSSLASCPDVNIVLEVLNFLLS 443 (557)
Q Consensus 420 ~ll~aLac~~d~~ll~~~L~~~l~ 443 (557)
.+..+|+...++..+..+..++-+
T Consensus 228 ~l~~~lal~~~~~a~~~L~~ll~d 251 (410)
T TIGR02270 228 RLLVLLAVAGGPDAQAWLRELLQA 251 (410)
T ss_pred HHHHHHHhCCchhHHHHHHHHhcC
Confidence 455566555777666666555433
No 42
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.78 E-value=1.1e+02 Score=25.74 Aligned_cols=54 Identities=6% Similarity=0.013 Sum_probs=34.7
Q ss_pred eeEEEEcCHH--HHHHHHHHHhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHH
Q 008697 222 GFYRVKYDKD--LAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM 275 (557)
Q Consensus 222 gyyRV~Yd~~--~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~ 275 (557)
-+|-|.|+.- .++.|+..|.....+......-..+++.....|.++++.+++++
T Consensus 57 ~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~eeA~~~L 112 (113)
T PF09862_consen 57 KELGISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISVEEALEIL 112 (113)
T ss_pred HHHCCCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCHHHHHHHh
Confidence 5667999863 47888888865211222222223344455679999999999876
No 43
>PF15467 SGIII: Secretogranin-3
Probab=21.10 E-value=65 Score=32.32 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHhcCC-----c----chHH--HHHHHHHHHHHHHHHHHHHhcChhh
Q 008697 498 ASYEKVREVEEFFSSRC-----K----PYIA--RTLRQSIERVQINAKWVESIRNEGH 544 (557)
Q Consensus 498 ~t~~~~~~~~~F~~~~~-----~----~~~~--~~~~~~le~i~~ni~W~~~~~~~~~ 544 (557)
+|.++..+++.=+...+ . .+.. ..-..-||.||.||.|+++|-.+.|
T Consensus 355 sTK~EAakMekeye~lKDSTK~e~~~~~~~~~pgKsEaYLEAIRKNIEWLKkHnK~gn 412 (453)
T PF15467_consen 355 STKEEAAKMEKEYENLKDSTKDEQQNAAGTDEPGKSEAYLEAIRKNIEWLKKHNKEGN 412 (453)
T ss_pred cHHHHHHHHHHHhhhhccccccccCCCcCCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 46777777766544321 0 1111 2234558999999999999866554
No 44
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.09 E-value=1.2e+02 Score=24.84 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhccccccccchhhhhcCcccHHHHHHH
Q 008697 415 SQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLAVSIEGRETAWKW 468 (557)
Q Consensus 415 ~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~i~~qd~~~~~~~~~~~~~~~w~f 468 (557)
...|.-|..+|||...|..+-+..+.-++=.|..|.+..-==....|+++.-+|
T Consensus 6 ~~vK~FIVQ~LAcfdTPs~v~~aVk~eFgi~vsrQqve~yDPTK~aG~~Ls~k~ 59 (104)
T PF10045_consen 6 KEVKAFIVQSLACFDTPSEVAEAVKEEFGIDVSRQQVESYDPTKRAGRDLSKKW 59 (104)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHhCCccCHHHHHHcCchHHHHHHHHHHH
Confidence 446888999999999999888877666654455553321100223466665444
No 45
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=20.25 E-value=2.5e+02 Score=25.81 Aligned_cols=29 Identities=41% Similarity=0.555 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHhhCHHHHHHHHHHHHHH
Q 008697 74 RKGASVIRMLQNYLGAECFQRSLASYIKK 102 (557)
Q Consensus 74 ~Kga~vl~Ml~~~iG~~~F~~gl~~yl~~ 102 (557)
.||+.|+|.|-..+|.|..-+.+..-|.+
T Consensus 7 ~Rg~~IIRqLC~~L~~E~iy~~la~iL~~ 35 (182)
T PF11916_consen 7 RRGSFIIRQLCVLLNAERIYRTLASILES 35 (182)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHcc
Confidence 68999999999999998777777776665
Done!