Query 008697
Match_columns 557
No_of_seqs 238 out of 2020
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 09:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3se6_A Endoplasmic reticulum a 100.0 2E-102 7E-107 884.3 53.3 533 1-553 383-960 (967)
2 2xdt_A Endoplasmic reticulum a 100.0 2.5E-99 9E-104 859.5 55.4 532 1-554 321-893 (897)
3 4fke_A Aminopeptidase N; zinc 100.0 2.6E-98 9E-103 853.2 49.0 535 1-553 335-902 (909)
4 1z5h_A Tricorn protease intera 100.0 6.9E-91 2.4E-95 779.6 43.5 496 1-542 278-777 (780)
5 3rjo_A Endoplasmic reticulum a 100.0 4.1E-77 1.4E-81 626.1 46.5 399 137-555 1-411 (419)
6 2gtq_A Aminopeptidase N; alani 100.0 1.4E-46 4.7E-51 423.2 31.4 431 1-456 306-785 (867)
7 3b34_A Aminopeptidase N; prote 100.0 1E-36 3.6E-41 342.0 39.1 418 1-445 331-794 (891)
8 3ebh_A PFA-M1, M1 family amino 100.0 7.7E-35 2.6E-39 324.9 32.8 237 1-254 314-573 (889)
9 3cia_A Cold-active aminopeptid 100.0 1E-32 3.5E-37 301.2 4.3 240 1-300 313-561 (605)
10 2xq0_A LTA-4 hydrolase, leukot 100.0 8E-30 2.8E-34 279.2 2.1 247 1-299 314-588 (632)
11 3u9w_A Leukotriene A-4 hydrola 100.0 1.1E-29 3.8E-34 277.3 2.4 157 1-157 306-474 (608)
12 4fgm_A Aminopeptidase N family 99.2 3.6E-11 1.2E-15 129.9 10.7 138 1-139 297-450 (597)
13 3ltj_A Alpharep-4; protein eng 78.4 14 0.00048 32.6 10.4 164 340-530 28-197 (201)
14 3ltm_A Alpha-REP4; protein eng 76.6 21 0.00071 31.7 11.1 163 340-528 33-200 (211)
15 1lsh_A Lipovitellin (LV-1N, LV 67.7 47 0.0016 38.1 13.6 95 344-443 458-557 (1056)
16 3ltm_A Alpha-REP4; protein eng 50.1 59 0.002 28.5 8.6 89 340-441 64-152 (211)
17 3ltj_A Alpharep-4; protein eng 45.7 1.5E+02 0.005 25.6 15.1 170 226-441 9-178 (201)
18 1oyz_A Hypothetical protein YI 43.9 90 0.0031 28.8 9.2 170 339-529 104-280 (280)
19 4ady_A RPN2, 26S proteasome re 40.3 4.4E+02 0.015 29.6 15.1 95 340-442 523-621 (963)
No 1
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=100.00 E-value=2e-102 Score=884.29 Aligned_cols=533 Identities=28% Similarity=0.528 Sum_probs=485.6
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhHHH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 80 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~vl 80 (557)
|+||+|+|||||||+|+++++++..+|+|.+++.|+.+...+|..|+..++|||..++.++.+|..+||.++|.||++||
T Consensus 383 ~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~al~~D~~~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL 462 (967)
T 3se6_A 383 MEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACIL 462 (967)
T ss_dssp ESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHTTTTSTTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHH
T ss_pred cCCCccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhcccCCCCceeecCCHHHHHHhcchhhhhHHHHHH
Confidence 68999999999999999999999999999988777655568999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhc---------------------------cCCcHHHHHhhhc
Q 008697 81 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEG---------------------------SGEPVNKLMNSWT 133 (557)
Q Consensus 81 ~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~---------------------------~~~~~~~~~~~W~ 133 (557)
|||+.+||++.|++||+.|+++|+|+|++++|||++|+++ +|.++.+||++|+
T Consensus 463 ~mL~~~lG~e~F~~gLr~Yl~~~~~~nat~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~ 542 (967)
T 3se6_A 463 NMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWT 542 (967)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHCC-------------------------CCCCCCHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHh
Confidence 9999999999999999999999999999999999999985 6789999999999
Q ss_pred cCCCcceEEEEEeCCEEEEEEeeccCCCCC---------CCceEEEEEEEEecCCCceeeEEecCCccEEEccccccccc
Q 008697 134 KQKGYPVISVKVKEEKLELEQSQFLSSGSP---------GDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSI 204 (557)
Q Consensus 134 ~q~G~P~v~v~~~~~~~~i~Q~rf~~~~~~---------~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 204 (557)
.|+|||+|+|+++++.++|+|+||+.++.. .+..|+|||+|.++.......+|++.++..+.++.
T Consensus 543 ~q~G~Pvl~V~~~~~~~~l~Q~rf~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~~~~~~~~~l~~~~~~i~~~~------ 616 (967)
T 3se6_A 543 LQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPE------ 616 (967)
T ss_dssp HSCSCEEEEEEEETTEEEEEEEECCCC-----------CCSCCCCCCEEEEESSCCCCEEECCCSSEEEEECSS------
T ss_pred cCCCCcEEEEEecCCEEEEEeeeecCCCCCCccccccccCCceEEEEEEEEeCCCCccceEEecCCceEEeccC------
Confidence 999999999999889999999999875421 34689999999877654455678877766666532
Q ss_pred CCCCCCCCceEecCCceeeEEEEcCHHHHHHHHHHHhcC--CCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCC
Q 008697 205 SKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMK--QLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEET 282 (557)
Q Consensus 205 ~~~~~~~~wi~~N~~~~gyyRV~Yd~~~~~~l~~~l~~~--~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~ 282 (557)
++ +||++|.++.|||||+||+++|..|+++|..+ .||+.+|+|||+|+|+||++|.++|+.+|+++.||++|+
T Consensus 617 ---~~--~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l~l~~~l~~E~ 691 (967)
T 3se6_A 617 ---KT--SWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHET 691 (967)
T ss_dssp ---CC--SCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHTTGGGTCC
T ss_pred ---CC--ceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCC
Confidence 22 89999999999999999999999999999753 699999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhhcc-cChhHHHHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008697 283 EYTVLSNLITISYKIGRIAAD-ARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNE 361 (557)
Q Consensus 283 ~~~vw~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~ 361 (557)
+|.||.+++..+..+.+++.. ..++.++.|++|+++++.|+++++||+ +++++.++++|..++.+||.+|+++|+++
T Consensus 692 ~~~~w~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~--~~~~~~~~~lR~~il~~ac~~g~~~c~~~ 769 (967)
T 3se6_A 692 SSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWS--DKGSVWDRMLRSALLKLACDLNHAPCIQK 769 (967)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTHHHHHHCCSS--CCSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHcCCC--CCCcHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999888887532 225678899999999999999999997 46789999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHh
Q 008697 362 ASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFL 441 (557)
Q Consensus 362 a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~ 441 (557)
|.++|++|+.++....|||++|.+|||+|++ ++++|++++++|++++++.||..++.||||++|+++++++|+++
T Consensus 770 A~~~f~~~~~~~~~~~i~~~lr~~Vyc~~~~-----~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~ 844 (967)
T 3se6_A 770 AAELFSQWMESSGKLNIPTDVLKIVYSVGAQ-----TTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELG 844 (967)
T ss_dssp HHHHHHHHHHTTTCSCCCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHCSCHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCcccCChhhhhHhHhhhhc-----cHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999998754447999999999999987 58999999999999999999999999999999999999999999
Q ss_pred hccc-cccccchhhhh---cCcccHHHHHHHHHHhHHHHHHHhCCC-cchhhHHHhhccCCCCHHHHHHHHHHHhcCCcc
Q 008697 442 LSSE-VRSQDAVYGLA---VSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSSRCKP 516 (557)
Q Consensus 442 l~~~-i~~qd~~~~~~---~~~~~~~~~w~fl~~N~~~i~~~~~~~-~~l~~iv~~~~~~~~t~~~~~~~~~F~~~~~~~ 516 (557)
++++ ||+||+..++. .|+.|++++|+|+++||+.|.++++.+ +.+.++|..+++.++|+++++++++||++++..
T Consensus 845 l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~l~~~~~f~~~~~~~ 924 (967)
T 3se6_A 845 MEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ 924 (967)
T ss_dssp HHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHTTTTTCCSHHHHHHHHHHHHHSCSS
T ss_pred hCcCcCcHhHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhCCcc
Confidence 9876 89999998887 789999999999999999999999865 689999999999999999999999999988654
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHhh
Q 008697 517 Y-IARTLRQSIERVQINAKWVESIRNEGHLAEAVKELA 553 (557)
Q Consensus 517 ~-~~~~~~~~le~i~~ni~W~~~~~~~~~~~~~~~~~~ 553 (557)
+ ..++++|++|+|+.|++|++++.++ |.+||+.+-
T Consensus 925 ~~~~~~~~q~le~i~~ni~W~~~~~~~--i~~wl~~~~ 960 (967)
T 3se6_A 925 GSHLDIFQTVLETITKNIKWLEKNLPT--LRTWLMVNT 960 (967)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcc
Confidence 4 4689999999999999999988777 999999874
No 2
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=100.00 E-value=2.5e-99 Score=859.54 Aligned_cols=532 Identities=26% Similarity=0.500 Sum_probs=483.3
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhHHH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 80 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~vl 80 (557)
|+||+|+|||||||+|+++++++.++|+|.++..|+.....++..|+..++|||..++.++.+|..+||.++|.||++||
T Consensus 321 ~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~f~~~~~~a~~~D~~~~~~Pi~~~v~~p~~i~~~fd~i~Y~KGa~vl 400 (897)
T 2xdt_A 321 MEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACIL 400 (897)
T ss_dssp ESSGGGTHHHHHHHHHHHHHHHHHHCGGGCGGGGHHHHHHHHHHHHTSTTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHH
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhcccCCCCCEEeCCCHHHHHHhcchhhhhhHHHHH
Confidence 68999999999999999999999999999988889434558999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhc-------------------c--------CCcHHHHHhhhc
Q 008697 81 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEG-------------------S--------GEPVNKLMNSWT 133 (557)
Q Consensus 81 ~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~-------------------~--------~~~~~~~~~~W~ 133 (557)
|||+.+||++.|++||+.|+++|+|+|++++|||++|+++ + |.++.+||++|+
T Consensus 401 ~mL~~~lG~e~F~~gl~~Yl~~~~~~~a~~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~dl~~~~~~W~ 480 (897)
T 2xdt_A 401 NMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWT 480 (897)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHTC----------------------------CCCHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCHHHHHHHhh
Confidence 9999999999999999999999999999999999999985 5 799999999999
Q ss_pred cCCCcceEEEEEeCCEEEEEEeeccCCCC---CCCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCC
Q 008697 134 KQKGYPVISVKVKEEKLELEQSQFLSSGS---PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDN 210 (557)
Q Consensus 134 ~q~G~P~v~v~~~~~~~~i~Q~rf~~~~~---~~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 210 (557)
+|+|||+|+|++++++++|+|+||+.++. .....|+|||++.++.......+|++.++..+.++. .+
T Consensus 481 ~q~G~P~l~v~~~~~~~~l~Q~~f~~~~~~~~~~~~~w~iPi~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~- 550 (897)
T 2xdt_A 481 LQKGFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPE---------EV- 550 (897)
T ss_dssp SSCSEEEEEEEEETTEEEEEEEEECCC-----CCCCCCCEEEEEEESSCSSCEEEEECSSEEEEECSS---------CC-
T ss_pred cCCCceEEEEEEcCCEEEEEEEEeecCCCCCCCCCceEEEEEEEEeCCCCccceEEecCCceEEEccC---------CC-
Confidence 99999999999998899999999987643 235689999999865544445678887766666521 22
Q ss_pred CCceEecCCceeeEEEEcCHHHHHHHHHHHhcC--CCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHH
Q 008697 211 GGWIKLNVNQTGFYRVKYDKDLAARLGYAIEMK--QLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLS 288 (557)
Q Consensus 211 ~~wi~~N~~~~gyyRV~Yd~~~~~~l~~~l~~~--~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~ 288 (557)
+||++|.++.|||||+||+++|..|+.+|..+ .|++.+|+|||+|+|+||++|.++|+.+|+++.||++|++|.||.
T Consensus 551 -~~i~~N~~~~gyyrV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l~l~~~l~~E~~~~~w~ 629 (897)
T 2xdt_A 551 -EWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVF 629 (897)
T ss_dssp -SCEEESGGGCSSCEEEECTTHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHTTTSSCHHHHHHHHGGGGGCCCHHHHH
T ss_pred -ceEEECCCceEEEEEEcCHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcHHHHH
Confidence 89999999999999999999999999999754 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccChhHH---HHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008697 289 NLITISYKIGRIAADARPELL---DYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKR 365 (557)
Q Consensus 289 ~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~ 365 (557)
+++..+..+..++.. ++.+ ..|++|+++++.|+++++||+. ++++.++++|..++.+||.+|+++|+++|+++
T Consensus 630 ~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~lg~~~--~~~~~~~~lr~~~~~~ac~~g~~~c~~~a~~~ 705 (897)
T 2xdt_A 630 QGLNELIPMYKLMEK--RDMNEVETQFKAFLIRLLRDLIDKQTWTD--EGSVSERMLRSQLLLLACVHNYQPCVQRAEGY 705 (897)
T ss_dssp HHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHTCCSSC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--ChhhhHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999988887643 3334 7899999999999999999986 67899999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhccc
Q 008697 366 FHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE 445 (557)
Q Consensus 366 f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~ 445 (557)
|++|+.++..+.|||++|.+|||+|+ | ++++|++|+++|++++++.||..+|.||||++|+++++++|+++++++
T Consensus 706 f~~~~~~~~~~~i~~~lr~~vy~~~~--g---~~~~~~~l~~~y~~~~~~~ek~~ll~aL~c~~~~~~l~~~L~~~~~~~ 780 (897)
T 2xdt_A 706 FRKWKESNGNLSLPVDVTLAVFAVGA--Q---STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGD 780 (897)
T ss_dssp HHHHHHTTTCSCCCHHHHHHHHHHHT--T---SHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS
T ss_pred HHHHhcCCCcCCCCcchhhhEEEEec--C---CHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCC
Confidence 99999876445899999999999998 6 899999999999999999999999999999999999999999999754
Q ss_pred -cccccchhhhh---cCcccHHHHHHHHHHhHHHHHHHhCCC-cchhhHHHhhccCCCCHHHHHHHHHHHhcCCc-chHH
Q 008697 446 -VRSQDAVYGLA---VSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSSRCK-PYIA 519 (557)
Q Consensus 446 -i~~qd~~~~~~---~~~~~~~~~w~fl~~N~~~i~~~~~~~-~~l~~iv~~~~~~~~t~~~~~~~~~F~~~~~~-~~~~ 519 (557)
|++||+..++. .|+.|++++|+|+++||+.|.++++.+ +.+.+++..+++.++|+++++++++||+.++. ++..
T Consensus 781 ~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~ 860 (897)
T 2xdt_A 781 KIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQL 860 (897)
T ss_dssp SSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHHTGGGTTTC
T ss_pred CCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhCCccchhH
Confidence 99999998887 689999999999999999999999865 57899999999999999999999999998643 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHhhc
Q 008697 520 RTLRQSIERVQINAKWVESIRNEGHLAEAVKELAY 554 (557)
Q Consensus 520 ~~~~~~le~i~~ni~W~~~~~~~~~~~~~~~~~~~ 554 (557)
+++++++|+|+.|++|++++.++ |.+||+.+++
T Consensus 861 ~~~~~~le~i~~n~~w~~~~~~~--i~~wl~~~~~ 893 (897)
T 2xdt_A 861 RCVQQTIETIEENIGWMDKNFDK--IRVWLQSEKL 893 (897)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCHHH--HHHHHHhhhh
Confidence 89999999999999999988777 9999999865
No 3
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=100.00 E-value=2.6e-98 Score=853.18 Aligned_cols=535 Identities=27% Similarity=0.480 Sum_probs=476.7
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhH-hhhhhcccCCCCCeeee---cCCcccccccccccccchh
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVE---VNHTGEIDEIFDAISYRKG 76 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~-~al~~D~~~~s~pi~~~---~~~~~~i~~~Fd~i~Y~Kg 76 (557)
|+||+|+|||||||+|++++++++.+|+|.++..|+.... .++..|+..++||+..+ +.++.+|+++||.|+|.||
T Consensus 335 ~~~W~dlWLnEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~~~~~d~~~~~~pi~~~~~~v~~~~~i~~~fd~i~Y~KG 414 (909)
T 4fke_A 335 LAWWNDLWLNEGFASYVEYLGADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTPAQISEMFDSISYSKG 414 (909)
T ss_dssp ESSGGGHHHHHHHHHHHHHHHHHHHSTTSCGGGGHHHHTHHHHHHHHTSTTCCCSCCCGGGCCSHHHHHTTSSHHHHHHH
T ss_pred ccccCcceeehHHHHHHHHHHHHhccccccHHHhhhhhHHHHHHHHhhhcccCCccccccccCChhhHHhhhhhHHHHHH
Confidence 7899999999999999999999999999999999988744 89999999999999875 6788899999999999999
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCC--------cHHHHHhhhccCCCcceEEEEEeCC
Q 008697 77 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE--------PVNKLMNSWTKQKGYPVISVKVKEE 148 (557)
Q Consensus 77 a~vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~--------~~~~~~~~W~~q~G~P~v~v~~~~~ 148 (557)
++|||||+++||+++|++||+.|+++|+|+|++++|||++|++++|. +|.++|++|++|+|||+|+|++.++
T Consensus 415 a~vL~mL~~~lG~e~F~~gl~~Yl~~~~~~na~~~Dl~~~l~~~s~~~~~~~~~~~v~~~~~~W~~q~G~Pvv~V~~~~~ 494 (909)
T 4fke_A 415 ASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVITVDTKTG 494 (909)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHHTCSSCCCSSCHHHHHHHHHSSCSCEEEEEETTTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcccccccchhHHhHhhCccccCCCcEEEEEeccC
Confidence 99999999999999999999999999999999999999999998763 5999999999999999999988766
Q ss_pred EEEEEEeeccCCC-------CCCCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCCCCceEecCCce
Q 008697 149 KLELEQSQFLSSG-------SPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 221 (557)
Q Consensus 149 ~~~i~Q~rf~~~~-------~~~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 221 (557)
. ++|+||+... ...+..|+|||++..++......++.........+.. ...+ +||++|.+++
T Consensus 495 ~--~~q~~~~~~~~~~~~~~~~~~~~w~IPl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~wi~~N~~~~ 563 (909)
T 4fke_A 495 N--ISQKHFLLDSESNVTRSSAFDYLWIVPISSIKNGVMQDHYWLRDVSQAQNDLFK-------TASD--DWVLLNVNVT 563 (909)
T ss_dssp E--EEEEECCSCTTCCCCSCCTTTTCCCEEECEEETTEECCCEEECSCSEEECGGGC-------CCTT--CCEEESGGGC
T ss_pred c--EEEEEEEeccCCCCCCCCCCCceEEEEEEEEeCCCccceEEeeccccceeeecc-------CCCC--CeEEECCCce
Confidence 5 6778877543 1234579999999765432222222222222222211 1223 8999999999
Q ss_pred eeEEEEcCHHHHHHHHHHHhcC--CCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHh
Q 008697 222 GFYRVKYDKDLAARLGYAIEMK--QLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGR 299 (557)
Q Consensus 222 gyyRV~Yd~~~~~~l~~~l~~~--~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~ 299 (557)
|||||+||+++|..|+.+|..+ .||+.+|+|||+|+|+||++|.++++.+|+++.||++|++|.||.+++..+..+..
T Consensus 564 gyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~ag~~~~~~~l~l~~~l~~E~~y~~w~~~~~~l~~l~~ 643 (909)
T 4fke_A 564 GYFQVNYDEDNWRMIQHQLQTNLSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYFSL 643 (909)
T ss_dssp SSCEEEECHHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHTTGGGGGCCSHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865 79999999999999999999999999999999999999999999999999998888
Q ss_pred hhcccChhHHHHHHHHHHHHhHHHHHHhCCccC----CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCC
Q 008697 300 IAADARPELLDYLKQFFISLFQNSAEKLGWDSK----PGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTT 375 (557)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~----~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~ 375 (557)
++.. ++.++.|++|+++++.|+++++|+... .++++.++++|..++.+||.+|+++|+++|+++|++|+.++..
T Consensus 644 ~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lr~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~ 721 (909)
T 4fke_A 644 MFDR--SEVYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPEN 721 (909)
T ss_dssp HHTT--STTHHHHHHHHHHHHHHHHHHHHHHTTTTTSCCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTS
T ss_pred HhcC--chHHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCC
Confidence 7533 567889999999999999999976543 3578889999999999999999999999999999999998777
Q ss_pred CCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhccc-cccccchhh
Q 008697 376 PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQDAVYG 454 (557)
Q Consensus 376 ~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~-i~~qd~~~~ 454 (557)
+.|||++|.+|||+++++| ++++|++++++|+++++++||..++.||||++|+++++++|+++++++ ||+||+..+
T Consensus 722 ~~i~~dlr~~vy~~~~~~g---~~~~~~~l~~~~~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~ 798 (909)
T 4fke_A 722 NPIHPNLRSTIYCNAIAQG---GQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATST 798 (909)
T ss_dssp CCSCTTTHHHHHHHHHHHS---CHHHHHHHHHHHHHCCSHHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHH
T ss_pred CcCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHH
Confidence 8899999999999999998 999999999999999999999999999999999999999999999875 999999988
Q ss_pred hh---cCcccHHHHHHHHHHhHHHHHHHhCCC-cchhhHHHhhccCCCCHHHHHHHHHHHhcCCc---chHHHHHHHHHH
Q 008697 455 LA---VSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSSRCK---PYIARTLRQSIE 527 (557)
Q Consensus 455 ~~---~~~~~~~~~w~fl~~N~~~i~~~~~~~-~~l~~iv~~~~~~~~t~~~~~~~~~F~~~~~~---~~~~~~~~~~le 527 (557)
+. .|+.|++++|+|+++||+.|.++++++ +.+.++|..+++.++|+++++++++||++++. +...+++++++|
T Consensus 799 ~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~~~le 878 (909)
T 4fke_A 799 INSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALE 878 (909)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHHHHHHHTTCSSSCCGGGTTHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCccccchHHHHHHHHHH
Confidence 87 789999999999999999999999866 67999999999999999999999999998864 345789999999
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHhh
Q 008697 528 RVQINAKWVESIRNEGHLAEAVKELA 553 (557)
Q Consensus 528 ~i~~ni~W~~~~~~~~~~~~~~~~~~ 553 (557)
+|+.|++|++++.++ |.+||+++.
T Consensus 879 ~i~~n~~w~~~~~~~--i~~wL~~n~ 902 (909)
T 4fke_A 879 KTKANIKWVKENKEV--VLNWFIEHS 902 (909)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHC
T ss_pred HHHHHHHHHHhCHHH--HHHHHHhcC
Confidence 999999999988877 999999984
No 4
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=100.00 E-value=6.9e-91 Score=779.64 Aligned_cols=496 Identities=29% Similarity=0.523 Sum_probs=451.4
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhH-hhhhhcccCCCCCeeeecCCcccccccccccccchhhHH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 79 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~-~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~v 79 (557)
|+||+|+|||||||+|+++++++.++|+|.++.+|+.... .++..|+..++|||..++.++.++..+||.++|.||++|
T Consensus 278 ~~~W~dlWLnEGfA~y~~~~~~~~~~~~~~~~~~f~~~~~~~al~~D~~~~~~pi~~~v~~~~~~~~~fd~i~Y~KGa~v 357 (780)
T 1z5h_A 278 MKWWNDLWLNESFATFMSYKTMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASI 357 (780)
T ss_dssp ESSGGGHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHTHHHHHHHTTSTTCCCSCCCCCSSCCTTTTSCHHHHHHHHHH
T ss_pred cCCcccccccHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccCCCCceecCCCHHHHHHhcchhhhhhHHHH
Confidence 6899999999999999999999999999999999987654 899999999999999999899999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEeCCEEEEEEeeccC
Q 008697 80 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 159 (557)
Q Consensus 80 l~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~~~~~~i~Q~rf~~ 159 (557)
||||+.+||++.|++||+.|+++|+|+|++++|||++|++++|.++.+||++|++|+|||+++|++++++++|+|+||..
T Consensus 358 l~mL~~~lG~e~F~~~l~~yl~~~~~~~~t~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~l~Q~~f~~ 437 (780)
T 1z5h_A 358 LRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGKPVKRVMEYWIKNPGYPVIKLKRNGRKITMYQTRFLL 437 (780)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHCSCHHHHHHHHHHSCSCEEEEEEESSSEEEEEEEECCS
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCCCHHHHHHHHHhCCCCceEEEEecCcEEEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999987
Q ss_pred CCCCCCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCCCCceEecCCceeeEEEEcCHHHHHHHHHH
Q 008697 160 SGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYA 239 (557)
Q Consensus 160 ~~~~~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~~~~l~~~ 239 (557)
++ ..+..|+|||++ .+++. .... ++++ ++.++. + +||++|.++.|||||+||+++|..|+++
T Consensus 438 ~~-~~~~~w~iPi~~-~~~~~-~~~~-l~~~--~~~~~~----------~--~~i~~N~~~~gyyrv~Yd~~~~~~l~~~ 499 (780)
T 1z5h_A 438 NG-EEEGRWPVPVNI-KKKDG-VERI-LLED--EASIEA----------D--GLIKINADSAGFYRVLYDDATFSDVMGH 499 (780)
T ss_dssp SC-CEECCCCEEEEE-EETTE-EEEE-EECS--SEEEEC----------T--TEEEESGGGCSSSEEECCHHHHHHHHHT
T ss_pred CC-CCCceEEEEEEE-cCCCc-eeee-ccCc--eEEccC----------C--ceEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 65 334689999999 43332 2334 5553 344421 1 7999999999999999999999999998
Q ss_pred HhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHhhhcccChhHHHHHHHHHHHH
Q 008697 240 IEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISL 319 (557)
Q Consensus 240 l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l 319 (557)
|. .|++.+|+|||+|+|+|+++|.++++.+++++.||++|++|.||.+++..+..+..+ . +.|++|++++
T Consensus 500 l~--~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~~~~--~------~~~~~~~~~l 569 (780)
T 1z5h_A 500 YR--DLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYLRML--T------HAFDDDARAF 569 (780)
T ss_dssp GG--GCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCCCHHHHHHHHHHHHHHHTT--C------STTHHHHHHH
T ss_pred hc--cCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhc--h------HHHHHHHHHH
Confidence 83 589999999999999999999999999999999999999999999999888777653 1 3488999999
Q ss_pred hHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCH
Q 008697 320 FQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDR 399 (557)
Q Consensus 320 ~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~ 399 (557)
+.++++++| .. +++.+..+|..++.+||.+|+++|++ |+++|++| ..||||+|..|||+++++| ++
T Consensus 570 ~~~~~~~l~--~~--~~~~~~~~r~~~~~~a~~~~~~~~~~-a~~~f~~~------~~i~~~lr~~v~~~~~~~g---~~ 635 (780)
T 1z5h_A 570 CRSRMQFLT--GK--QDENLKIALGRVSRLYVMVDESYAEE-MSKLFKDF------DSAEPEMRSSIATAYALVT---GD 635 (780)
T ss_dssp HHHHHHHHT--TC--CCHHHHHHHHHHHHHHHHHCHHHHHH-HHTTGGGG------GGSCHHHHHHHHHHHHHHT---CC
T ss_pred HHHHHHHcC--CC--CChHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhc------CCCCHHHHHHHHHHHHHcC---cH
Confidence 999999999 22 78899999999999999999999999 99999988 2599999999999999987 55
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhccccccccchhhhh---cCcccHHHHHHHHHHhHHHH
Q 008697 400 SGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDAVYGLA---VSIEGRETAWKWLKDNWDHI 476 (557)
Q Consensus 400 ~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~i~~qd~~~~~~---~~~~~~~~~w~fl~~N~~~i 476 (557)
|++++++|+++++++||..++.||||++|+++++++|++++++.+++||...++. .||.|++++|+|+++||+.|
T Consensus 636 --~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~l~~~~~~~i~~qd~~~~~~~~~~~~~~~~~~~~~~~~n~~~l 713 (780)
T 1z5h_A 636 --LKGLLEKFRSVDRDEDRVRIISAFGKLKSNTDLSTVYGMVEKTEIKKQDMISFFSSALETLPGREFIFANLDRIIRLV 713 (780)
T ss_dssp --HHHHHHHHHSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTSHHHHHHHHHTHHHHHHHH
T ss_pred --HHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986699999998877 58999999999999999999
Q ss_pred HHHhCCCcchhhHHHhhccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhcCh
Q 008697 477 SKTWGSGFLITRFISSIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQINAKWVESIRNE 542 (557)
Q Consensus 477 ~~~~~~~~~l~~iv~~~~~~~~t~~~~~~~~~F~~~~~~~~~~~~~~~~le~i~~ni~W~~~~~~~ 542 (557)
.+++++.+.+.+++..+ +.++|++ ++++++||++++.++..++++|++|+|+.|++|++++...
T Consensus 714 ~~~~~~~~~~~~~i~~~-~~~~t~~-~~~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~ 777 (780)
T 1z5h_A 714 IRYFTGNRTASRTVEMM-IPVIGLD-HPDAEDIVRNIGSKNISMGLAKGIEMLAVNRKLVERIRQT 777 (780)
T ss_dssp HHHHCSSSHHHHHHHHH-HHHHHHH-CTTHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCchhHHHHHHhh-hccCCHH-HHHHHHHHccCCCccHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99998556789999999 8999999 9999999999876677899999999999999999988654
No 5
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-77 Score=626.08 Aligned_cols=399 Identities=22% Similarity=0.374 Sum_probs=357.4
Q ss_pred CcceEEEEEeCCEEEEEEeeccCCCCC---CCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCCCCc
Q 008697 137 GYPVISVKVKEEKLELEQSQFLSSGSP---GDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGW 213 (557)
Q Consensus 137 G~P~v~v~~~~~~~~i~Q~rf~~~~~~---~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w 213 (557)
|||||+|++++++++|+|+||+.++.. .+..|+|||++.++..+....+|+++++.++.++. ++ +|
T Consensus 1 GyPvvtV~~~~~~~~l~Q~RFl~~~~~~~~~~~~W~IPl~~~~~~~~~~~~~~l~~~~~~i~l~~---------~~--~w 69 (419)
T 3rjo_A 1 GFPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVLILPE---------EV--EW 69 (419)
T ss_dssp CEEEEEEEEETTEEEEEEEEEC----------CCCCEEEEEEESSCSSCEEEEECSSEEEEECSS---------CC--SC
T ss_pred CCCEEEEEECCCEEEEEEeeccCCCCCCCCCCeEEEEEEEEEeCCCCccceEEEecCceEEEcCC---------CC--ce
Confidence 999999999889999999999986532 35789999999887654455678888877776531 23 89
Q ss_pred eEecCCceeeEEEEcCHHHHHHHHHHHhcC--CCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHH
Q 008697 214 IKLNVNQTGFYRVKYDKDLAARLGYAIEMK--QLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLI 291 (557)
Q Consensus 214 i~~N~~~~gyyRV~Yd~~~~~~l~~~l~~~--~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~ 291 (557)
|++|++++|||||+||+++|..|+.+|..+ .||+.+|+|||+|+|+||++|+++|+.+|+++.||++|++|+||.+++
T Consensus 70 i~~N~~~~GyYRVnYd~~~w~~L~~~L~~~~~~i~~~dRa~LidD~~~La~ag~~~~~~~l~l~~yL~~E~~y~~w~~~~ 149 (419)
T 3rjo_A 70 IKFNVGMNGYYIVHYEDDGWDSLTGLLKGTHTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPVFQGL 149 (419)
T ss_dssp EEEEESSSSCCEEECHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGGGCCSHHHHHHHH
T ss_pred EEEeCCccceEEEEeCHHHHHHHHHHHhhCCccCCHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcccchHHHHHHHH
Confidence 999999999999999999999999999753 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccC-hhHHHHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008697 292 TISYKIGRIAADAR-PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFL 370 (557)
Q Consensus 292 ~~l~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~ 370 (557)
..+..+..++...+ ++.++.|++|+++++.|+++++||++ ++++.+.++|..++.+||.+|+++|+++|.++|++|+
T Consensus 150 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~~--~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~ 227 (419)
T 3rjo_A 150 NELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWTD--EGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWK 227 (419)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSSC--CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCCC--CchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99999988753221 56789999999999999999999974 5889999999999999999999999999999999999
Q ss_pred cCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhccc-cccc
Q 008697 371 ADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRSQ 449 (557)
Q Consensus 371 ~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~l~~~-i~~q 449 (557)
.++....|||++|.+|||++++ ++++|++++++|+++++++||..++.||||++|+++++++|+++++++ ||+|
T Consensus 228 ~~~~~~~i~~dlr~~Vy~~~~~-----~~~~~~~l~~~y~~s~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~q 302 (419)
T 3rjo_A 228 ESNGNLSLPVDVTLAVFAVGAQ-----STEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQ 302 (419)
T ss_dssp HTTTCSCCCGGGHHHHHHHHTT-----SHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGG
T ss_pred hCCCCCCCCCCcceeEEeeeeC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchh
Confidence 8754447999999999999998 588999999999999999999999999999999999999999999887 6999
Q ss_pred cchhhhh---cCcccHHHHHHHHHHhHHHHHHHhCCC-cchhhHHHhhccCCCCHHHHHHHHHHHhcCCcch-HHHHHHH
Q 008697 450 DAVYGLA---VSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIVSPFASYEKVREVEEFFSSRCKPY-IARTLRQ 524 (557)
Q Consensus 450 d~~~~~~---~~~~~~~~~w~fl~~N~~~i~~~~~~~-~~l~~iv~~~~~~~~t~~~~~~~~~F~~~~~~~~-~~~~~~~ 524 (557)
|+..++. .||.|++++|+|+++||+.|.++++.+ +.++++|..+++.|+|+++++++++||++++..+ ..++++|
T Consensus 303 D~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~l~e~~~Ff~~~~~~~~~~~~~~q 382 (419)
T 3rjo_A 303 EFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEEVKGFFSSLKENGSQLRCVQQ 382 (419)
T ss_dssp GHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCCSHHHHHHHHHHHHTTTTC-CCCHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcCCCHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 9998886 789999999999999999999999865 6899999999999999999999999999987665 6789999
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHhhcc
Q 008697 525 SIERVQINAKWVESIRNEGHLAEAVKELAYR 555 (557)
Q Consensus 525 ~le~i~~ni~W~~~~~~~~~~~~~~~~~~~~ 555 (557)
++|+|+.|++|++++.++ |.+||+.++|.
T Consensus 383 ale~i~~ni~W~~~~~~~--v~~wL~~~~~~ 411 (419)
T 3rjo_A 383 TIETIEENIGWMDKNFDK--IRVWLQSEKLE 411 (419)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHhhHH
Confidence 999999999999988777 99999999874
No 6
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=100.00 E-value=1.4e-46 Score=423.20 Aligned_cols=431 Identities=14% Similarity=0.155 Sum_probs=325.4
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCch-hhHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhHH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEW-KIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 79 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~-~~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~v 79 (557)
|+||+|+|||||||+|++..+.....+.- ............++..|+.+++|||.. .++.++...|+.++|.||++|
T Consensus 306 ~~~W~dlWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~~~Pi~~--~~~~~i~~~f~~i~Y~KGa~v 383 (867)
T 2gtq_A 306 CRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLRQHQFPEDAGPTAHPVRP--ASYEEMNNFYTMTVYEKGAEV 383 (867)
T ss_dssp ESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSTTCCCSSC--SEESCGGGGCSHHHHHHHHHH
T ss_pred ecccccccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhhhccCccCCCCcC--CChhhhhhhccchhhhHHHHH
Confidence 68999999999999999988887766531 111111111124677899999999975 246778899999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEe--CCE--EEEEEe
Q 008697 80 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEK--LELEQS 155 (557)
Q Consensus 80 l~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~--~~~--~~i~Q~ 155 (557)
||||+.+||++.|++||+.|+++|+|++++++|||+++++++|.++..| ++|++|+|||+++|++. ++. ++|+|+
T Consensus 384 l~mL~~~lG~e~F~~glr~Yl~~~~~~~~t~~Df~~~l~~~sg~dl~~f-~~W~~q~G~P~l~v~~~~~~~~~~l~l~Q~ 462 (867)
T 2gtq_A 384 VRMYHTLLGEEGFQKGMKLYFQRHDGQAVTCDDFRAAMADANGINLDQF-ALWYSQAGTPVLEAEGRLKNNIFELTVKQT 462 (867)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHTCCCGGG-GHHHHCCSCCEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHH-HHHhcCCCCceEEEEEEecCCEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999985 79999999999999975 444 889999
Q ss_pred eccCCCCCCCceEEEEEEEEecC--CCc-----------eeeEEecCCccEEEcccccccccCCCCCCCCceEecCCcee
Q 008697 156 QFLSSGSPGDGQWIVPITLCCGS--YDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 222 (557)
Q Consensus 156 rf~~~~~~~~~~W~iPl~~~~~~--~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 222 (557)
++...+......|+|||++.+.. +.. ...++++++++++.++.. ... .|+.+|.+..+
T Consensus 463 ~~~~~~~~~~~~~~iPi~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~--p~~~l~r~fs~ 533 (867)
T 2gtq_A 463 VPPTPDMTDKQPMMIPVKVGLLNRNGEAVAFDYQGKRATEAVLLLTEAEQTFLLEGV-------TEA--VVPSLLRGFSA 533 (867)
T ss_dssp CCCBTTBSCCCCCCEEEEEEEECTTCCBCCEECSSCEESCEEEEECSSEEEEEEBCC-------CSC--CEEEESTTCCS
T ss_pred cCCCCCCCCCceEEEEEEEEEEcCCCcccccccccccccceEEEEcCCceEEEEeCC-------CCC--CceEecCCCCc
Confidence 98654444556899999997532 211 234668888888887531 112 68999999999
Q ss_pred eEEEEcCHHHHHHHHHHHhcCCCCHHhhHHH---HHHHHHH-----HHcCCC-C-hHHHHHHHHhcc-cCC-ChhhHHHH
Q 008697 223 FYRVKYDKDLAARLGYAIEMKQLSETDRFGI---LDDHFAL-----CMARQQ-T-LTSLLTLMASYS-EET-EYTVLSNL 290 (557)
Q Consensus 223 yyRV~Yd~~~~~~l~~~l~~~~i~~~~r~~l---i~D~~~l-----a~~g~l-~-~~~~l~l~~~l~-~E~-~~~vw~~~ 290 (557)
++||+|+-..+.. ...+.... ++.+|.++ +.|...+ +.+|.. + +..+++++.++. +|. ++.+|..+
T Consensus 534 ~~~l~~~~~~~~l-~~l~~~~~-d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~ 611 (867)
T 2gtq_A 534 PVHLNYPYSDDDL-LLLLAHDS-DAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDDLLDNAFKALL 611 (867)
T ss_dssp SCEEECCCCHHHH-HHHHHHCS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred cEEEECCCCHHHH-HHHHhhCC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhcCcCCCHHHHHHH
Confidence 9999976544432 33333332 48888766 8888887 667766 7 889999998754 777 99999999
Q ss_pred HH--HHHHHHhhhcccChhH----HHHHHH-HHHHH---hHHHHHHh-----C-CccCCCCCHHHHHHHHHHHHHHHhcC
Q 008697 291 IT--ISYKIGRIAADARPEL----LDYLKQ-FFISL---FQNSAEKL-----G-WDSKPGESHLDALLRGEIFTALALLG 354 (557)
Q Consensus 291 ~~--~l~~l~~~~~~~~~~~----~~~~~~-~~~~l---~~~~~~~l-----g-~~~~~~~~~~~~~lr~~il~~ac~~g 354 (557)
+. .+..|...+..-+++. ...+++ +...+ +.++|+++ | |.+.+ ++...+.||..++.++|..|
T Consensus 612 l~lp~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~lr~~~l~~l~~~~ 690 (867)
T 2gtq_A 612 LGVPSEAELWDGAENIDPLRYHQAREALLDTLAVHFLPKWHELNRQAAKQENQSYEYSP-EAAGWRTLRNVCRAFVLRAD 690 (867)
T ss_dssp TCCCCHHHHTTTCSSBCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCSCCH-HHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCh-HHHHHHHHHHHHHHHHHhcC
Confidence 87 4555655321112332 334444 55555 88889877 7 77655 77788999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHH
Q 008697 355 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 434 (557)
Q Consensus 355 ~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll 434 (557)
++|++.|.++|.+... +....++.++ ++|.....+ +++.++.+.++|+++....+|-.++. ||++++.++
T Consensus 691 -~~~~~~a~~~~~~~a~--nmt~~~~al~--~l~~~~~~~---~~~~~~~f~~~~~~~~~~~~k~~~~~--a~~~~~~~~ 760 (867)
T 2gtq_A 691 -PAHIETVAEKYGEMAQ--NMTHEWGILS--AVNGNESDT---RNRLLAQFADKFSDDALVMDKYFALV--GSSRRSDTL 760 (867)
T ss_dssp -TTHHHHHHHTHHHHCS--SHHHHHHHHH--HHTTCCSHH---HHHHHHHHHHHTTTCHHHHHHHHHHH--HHCCSTTHH
T ss_pred -ccHHHHHHHHHHHhCC--CHhHHHHHHH--HHHhcCccc---HHHHHHHHHHHHcCCchHHHHHHHHH--hcCCChHHH
Confidence 9999999999986532 2234555666 555543323 56789999999999888888887777 688999999
Q ss_pred HHHHHHhhcc--c-cccccchhhhh
Q 008697 435 LEVLNFLLSS--E-VRSQDAVYGLA 456 (557)
Q Consensus 435 ~~~L~~~l~~--~-i~~qd~~~~~~ 456 (557)
++++.+..++ + ..++++..++.
T Consensus 761 ~~v~~l~~~~~f~~~npn~~r~l~~ 785 (867)
T 2gtq_A 761 QQVRTALQHPKFSLENPNKARSLIG 785 (867)
T ss_dssp HHHHHHTTSTTCCTTCHHHHHHHHH
T ss_pred HHHHHHhhCcCCCcCCchHHHHHHH
Confidence 9999999987 3 45566654443
No 7
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=100.00 E-value=1e-36 Score=342.01 Aligned_cols=418 Identities=18% Similarity=0.179 Sum_probs=276.4
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCch-h-hHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEW-K-IWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGAS 78 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~-~-~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~ 78 (557)
|+||+|+|||||||+|++..+.....+.- . +...+.. ...++..|+.+.+|||... ++.+++++|+.++|.||++
T Consensus 331 ~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~~~~~~~~l-~~~~~~~D~~~~~~Pi~~~--~~~~i~~~f~~i~Y~KGa~ 407 (891)
T 3b34_A 331 CRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTM-RGLQFAEDASPMAHPIRPD--MVIEMNNFYTLTVYEKGAE 407 (891)
T ss_dssp ESSGGGHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHTHHHHHTSTTCCCSSCS--EESCGGGGCCHHHHHHHHH
T ss_pred ccchhhceehHHHHHHHHHHHHHHHhCHHHHHHHHHHHH-HHhhhhhhccccCCCCccc--cccccccccccchhhHHHH
Confidence 68999999999999999988887766531 1 1111111 1145778999999999652 4567889999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHHHhhhccCCCcceEEEEEe----CC--EEEE
Q 008697 79 VIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK----EE--KLEL 152 (557)
Q Consensus 79 vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P~v~v~~~----~~--~~~i 152 (557)
|||||+.+||++.|++||+.|+++|+|++++++|||+++++++|.++.. |++|++|+|+|+++|++. ++ +++|
T Consensus 408 VLrML~~~lG~e~F~~gLr~Yl~~~~~~~att~Df~~ale~~sg~dL~~-f~~W~~q~G~P~l~V~~~~~~~~~~~~ltl 486 (891)
T 3b34_A 408 VIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSH-FRRWYSQSGTPIVTVKDDYNPETEQYTLTI 486 (891)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHHCCCCTT-TTHHHHCCSCCEEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhCCCHHH-HHHHHcCCCCceEEEEEEeecCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999998 479999999999999875 23 4899
Q ss_pred EEeeccCCCCCCCceEEEEEEEEecC--CCc----------eeeEEecCCccEEEcccccccccCCCCCCCCceEecCCc
Q 008697 153 EQSQFLSSGSPGDGQWIVPITLCCGS--YDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQ 220 (557)
Q Consensus 153 ~Q~rf~~~~~~~~~~W~iPl~~~~~~--~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~ 220 (557)
+|+|+...+......|+|||++.+.. +.. ...++++++++++.++.. ... .|+.+|.+.
T Consensus 487 ~Q~~~~~~~~~~~~~~~iPi~v~l~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v-------~~~--P~~~l~~~~ 557 (891)
T 3b34_A 487 SQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNSVLNVTQAEQTFVFDNV-------YFQ--PVPALLCEF 557 (891)
T ss_dssp EEECCCBTTBSCCCCCCEEEEEEEECTTSCBCCCEETTEECCSEEEECSSEEEEEECCC-------CSC--CEEEESTTC
T ss_pred EEecCCCCCCCCCceEEEEEEEEEEcCCCCcccccccccccceEEEecCCcEEEEEccC-------CCC--CcEEEcCCC
Confidence 99998654444556899999997632 211 135778888888887531 112 699999999
Q ss_pred eeeEEEEcCHHHHHHHHHHHhcCCCCHHhhHHHHHHHHHHHH--------cCC-CC-hHHHHHHHH-hcccCCChhhHHH
Q 008697 221 TGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCM--------ARQ-QT-LTSLLTLMA-SYSEETEYTVLSN 289 (557)
Q Consensus 221 ~gyyRV~Yd~~~~~~l~~~l~~~~i~~~~r~~li~D~~~la~--------~g~-l~-~~~~l~l~~-~l~~E~~~~vw~~ 289 (557)
.|||||+||...|+.+. ++..+ -++.+|.+.+.+++.... .|. +. ...+++.+. .|..+. .-|.-.
T Consensus 558 s~~~~v~~~~~~~~l~~-~l~~d-~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 634 (891)
T 3b34_A 558 SAPVKLEYKWSDQQLTF-LMRHA-RNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEK-IDPALA 634 (891)
T ss_dssp CSSCEEECCCCHHHHHH-HHHHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCSS-SCHHHH
T ss_pred cceEEEeCCCCHHHHHH-HHhhC-CChhHHHHHHHHHHHHHHHHHHHhhhcCCCcCccHHHHHHHHHHhcCCC-cCHHHH
Confidence 99999999988887664 34332 358888888887766432 222 12 244566654 344332 223222
Q ss_pred H--HH--HHHHHHhhhcccChhHHHH--------HHHHHHHHhHHHHHHhCCccC---CCCCHHHHHHHHHHHHHHHhcC
Q 008697 290 L--IT--ISYKIGRIAADARPELLDY--------LKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLG 354 (557)
Q Consensus 290 ~--~~--~l~~l~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lr~~il~~ac~~g 354 (557)
+ +. ....|...+..-+++.-.. +..-+...+..+|+++- ... ..+..-.+.||..+|.++|..+
T Consensus 635 a~~l~lp~~~~~~~~~~~~d~~~i~~~r~~~~~~la~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~n~~l~~l~~~~ 713 (891)
T 3b34_A 635 AEILTLPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANY-QSEYRVEHEDIAKRTLRNACLRFLAFGE 713 (891)
T ss_dssp HHHTSCCCHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTC-CSSCCCSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhcCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2 11 1122222211112332112 22223334456666653 211 1123356789999999999977
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHH
Q 008697 355 HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIV 434 (557)
Q Consensus 355 ~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll 434 (557)
.++..+.|.+.|+. .+ ..--+-+.+.+.+.......++..+...++++.....-+|=-.+.| +++.+..+
T Consensus 714 ~~~~~~~~~~~~~~--a~------nmtd~~~al~~~~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa--~~~~~~~~ 783 (891)
T 3b34_A 714 THLADVLVSKQFHE--AN------NMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQA--TSPAANVL 783 (891)
T ss_dssp HHHHHHHHHHHHHH--CS------SHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTCHHHHHHHHHHHH--TCCCTTHH
T ss_pred CchHHHHHHHHHhh--CC------ChHHHHHHHHHHhccCcchHHHHHHHHHHHhccCcHHHHHHHHHHh--CCCCccHH
Confidence 66667778777764 11 1122344444444432112345667777777754444344444444 55666677
Q ss_pred HHHHHHhhccc
Q 008697 435 LEVLNFLLSSE 445 (557)
Q Consensus 435 ~~~L~~~l~~~ 445 (557)
.++-.+.-.+.
T Consensus 784 ~~v~~l~~h~~ 794 (891)
T 3b34_A 784 ETVRGLLQHRS 794 (891)
T ss_dssp HHHHHHTTCTT
T ss_pred HHHHHHhcCCC
Confidence 77666655554
No 8
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=100.00 E-value=7.7e-35 Score=324.89 Aligned_cols=237 Identities=20% Similarity=0.260 Sum_probs=183.5
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCc-hh-hHHHHHHHhHhhhhhcccCCCCCeeeecCCcccccccccccccchhhH
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPE-WK-IWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGAS 78 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~-~~-~~~~f~~~~~~al~~D~~~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kga~ 78 (557)
|+||+|+|||||||+|++.++.....+. .. +...+.. ...++..|+.+.+|||... ++.+|..+|+.++|.||++
T Consensus 314 ~~~W~dlWLnEGFAtY~e~~~~~~~~~~~~~r~~~~~~l-r~~~~~~D~~~~shPI~~~--~~~ei~~~f~~i~Y~KGa~ 390 (889)
T 3ebh_A 314 LRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLL-RSVQFLEDSSPLSHPIRPE--SYVSMENFYTTTVYDKGSE 390 (889)
T ss_dssp ESSGGGHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHH-HHHHHHHHTSTTCCCSSCS--EESCGGGCCCHHHHHHHHH
T ss_pred ecccccceeeHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHhhhhccCccCCCCCCc--chhhhhhhccchhhhHHHH
Confidence 6899999999999999998887765443 22 2221111 1245778999999999642 4567889999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhcc-------CCcHHHHHhhhccCCCcceEEEEEe----C
Q 008697 79 VIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGS-------GEPVNKLMNSWTKQKGYPVISVKVK----E 147 (557)
Q Consensus 79 vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~-------~~~~~~~~~~W~~q~G~P~v~v~~~----~ 147 (557)
|||||+.+||++.|++||+.|+++|+|+|++++|||++|++++ |.++.. |++|++|+|||+|+|+++ +
T Consensus 391 vLrML~~~lGde~F~~gLr~Yl~~~~~~natt~Df~~ale~as~~~~~~~g~dL~~-f~~Wl~q~G~P~l~V~~~~d~~~ 469 (889)
T 3ebh_A 391 VMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAYKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYNYDAEK 469 (889)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSEECHHHHHHHHHHHHHHHHTCTTCCCTG-GGHHHHCCSCCEEEEEEEEETTT
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhccCCCCCCHHH-HHHHhcCCCCceEEEEEeecCCC
Confidence 9999999999999999999999999999999999999999999 999986 689999999999999975 2
Q ss_pred C--EEEEEEeeccCCCCCCCceEEEEEEEEecC---CCc---eeeEEecCCccEEEcccccccccCCCCCCCCceEecCC
Q 008697 148 E--KLELEQSQFLSSGSPGDGQWIVPITLCCGS---YDV---CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVN 219 (557)
Q Consensus 148 ~--~~~i~Q~rf~~~~~~~~~~W~iPl~~~~~~---~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~ 219 (557)
+ +++|+|+++...+......|+|||++..-. +.. ...+.++++++++.++... .. .++.+|.+
T Consensus 470 ~~~~ltl~Q~~~~~~~~~~~~~~~IPl~v~l~~~~~G~~~~~~~~l~l~~~~q~f~~~~~~-------~~--p~~sl~r~ 540 (889)
T 3ebh_A 470 KQYSIHVNQYTKPDENQKEKKPLFIPISVGLINPENGKEMISQTTLELTKESDTFVFNNIA-------VK--PIPSLFRG 540 (889)
T ss_dssp TEEEEEEEEECCCCSSCSSCCCCCEEEEEEEECTTTCCBCSCCEEEEECSSEEEEEESCCC-------SC--CEEEESTT
T ss_pred CEEEEEEEEecCCCCCCCCCceEEEEEEEEEEeCCCCccccceeEEEecCCcEEEEEcCCC-------CC--CeEEEcCC
Confidence 2 689999988655555567899999997622 221 2457888899999886321 11 46678999
Q ss_pred ceeeEEEEcC--HHHHHHHHHHHhcCCCCHHhhHHHH
Q 008697 220 QTGFYRVKYD--KDLAARLGYAIEMKQLSETDRFGIL 254 (557)
Q Consensus 220 ~~gyyRV~Yd--~~~~~~l~~~l~~~~i~~~~r~~li 254 (557)
..+++|+.|+ .+.+..| +..+. ++.+|..-.
T Consensus 541 fsa~v~l~~~~~~~~l~~l---~~~d~-d~~~r~~a~ 573 (889)
T 3ebh_A 541 FSAPVYIEDQLTDEERILL---LKYDS-DAFVRYNSC 573 (889)
T ss_dssp CCSSSEEECCCCHHHHHHH---HHHCS-CHHHHHHHH
T ss_pred CCceEEEeCCCCHHHHHHH---HhhCC-ChhHHHHHH
Confidence 9999999976 4544443 43332 366665443
No 9
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=99.97 E-value=1e-32 Score=301.20 Aligned_cols=240 Identities=17% Similarity=0.251 Sum_probs=184.0
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchh--hHHHHHHHhH-hhhhhccc-CCCCCeeeecCCcccccccccccccchh
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECT-EGLRLDGL-AESHPIEVEVNHTGEIDEIFDAISYRKG 76 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~--~~~~f~~~~~-~al~~D~~-~~s~pi~~~~~~~~~i~~~Fd~i~Y~Kg 76 (557)
|+||+|+|||||||+|+++++++.++|++. +...+....+ .++ |+. .++||+..++. +.++.++|+.++|.||
T Consensus 313 ~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~~~l--~~~~~~~~pl~~~~~-~~~~~~~f~~i~Y~KG 389 (605)
T 3cia_A 313 NESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNAEI--LELDASDTQLYIDLK-GRDPDDAFSGVPYVKG 389 (605)
T ss_dssp ESSTTSTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHSCTTTTSSSCCCT-TCCTTTSCCSHHHHHH
T ss_pred cCcchHhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH--HhhccCCCCcccCCC-CCChhHhhCccchhHH
Confidence 689999999999999999999999999863 2222211212 333 455 67899876654 3567889999999999
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCC----cHHH-HHhhhccCCCcceEEEEEeCCEEE
Q 008697 77 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PVNK-LMNSWTKQKGYPVISVKVKEEKLE 151 (557)
Q Consensus 77 a~vl~Ml~~~iG~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~----~~~~-~~~~W~~q~G~P~v~v~~~~~~~~ 151 (557)
++|||||+..+|++.|++||+.|+++|+|++++++|||+++++++|. ++.. +|++|++|+|+|+++|+.+.+.+.
T Consensus 390 a~vl~mL~~~lG~e~F~~~lr~yl~~~~~~~~t~~df~~~l~~~~~~~~~~~l~~~~~~~W~~~~G~P~~~~~~~~~~~~ 469 (605)
T 3cia_A 390 QLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPTSNAFK 469 (605)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTTEEECHHHHHHHHHHTTTTTSTTSSCHHHHHHHHHSSSCCSSSCCCCCHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhccccccccchhhHHHHhcCCCCCceeccCCchHHH
Confidence 99999999999999999999999999999999999999999999874 4554 699999999999998765431100
Q ss_pred EEEeeccCCCCCCCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCCCCceEecCCceeeEEEEcCHH
Q 008697 152 LEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKD 231 (557)
Q Consensus 152 i~Q~rf~~~~~~~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~ 231 (557)
+ ...... .|+..+.....+.|++|+..
T Consensus 470 --~-----------------------~~~l~~----------------------------~w~~~~~~~~~~~~~~~~~~ 496 (605)
T 3cia_A 470 --V-----------------------IDKQIN----------------------------QLVTDELTLEQLPTAQWTLH 496 (605)
T ss_dssp --H-----------------------HHHHTC----------------------------CTTTTSSCCSCSGGGGCCSH
T ss_pred --H-----------------------HHHHHH----------------------------HHHhcCCCccccchhhCCHH
Confidence 0 000000 11111000012348999999
Q ss_pred HHHHHHHHHhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHhh
Q 008697 232 LAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRI 300 (557)
Q Consensus 232 ~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~~ 300 (557)
+|..+++.|.. .|+ .+|+++|+|+|+|+.++ +.++.+..+.++.++.++.+|..+...|..+.++
T Consensus 497 ~~~~~l~~l~~-~l~-~~~~~~l~~~~~~~~~~--n~ei~~~~~~~~~~~~~~~~~~~~~~~l~~~gr~ 561 (605)
T 3cia_A 497 EWLHFINNLPV-DLD-HQRMVNLDKAFDLTNSS--NAEIAHAWYLLSVRADYKEVYPAMAKYLKSIGRR 561 (605)
T ss_dssp HHHHHHHHSCS-CCT-TC-CHHHHHHHCCSSCS--SHHHHHHHHHHHHHHTCGGGHHHHHHHHHHCCCS
T ss_pred HHHHHHHhcCc-cCC-HHHHHHHHHhhCCCcCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCc
Confidence 99999999987 787 99999999999987665 5568899999999999999999998776666554
No 10
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=99.95 E-value=8e-30 Score=279.21 Aligned_cols=247 Identities=15% Similarity=0.202 Sum_probs=179.0
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchh--hHHHHHHHhH-hhhhhcccCCCCC---eeeecCCcccccccccccccc
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECT-EGLRLDGLAESHP---IEVEVNHTGEIDEIFDAISYR 74 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~--~~~~f~~~~~-~al~~D~~~~s~p---i~~~~~~~~~i~~~Fd~i~Y~ 74 (557)
|+||+|+|||||||+|+++++++.++|++. +...+....+ .++ |++.++|| +..++.++.++.++|+.++|.
T Consensus 314 ~~~W~dlWLnEGfAtY~e~~~~~~~~g~~~~~~~~~~~~~~l~~~l--~~~~~~~pl~~l~~~~~~~~~~~~~f~~i~Y~ 391 (632)
T 2xq0_A 314 NCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSALIGWSDLQNSI--DSMKDPERFSTLVQNLNDNTDPDDAFSTVPYE 391 (632)
T ss_dssp ESSGGGTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HTCSSHHHHTSSSCCCCSSSCGGGGCSSHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--HhcccCCCCcccccCCCCCCChHHhccchhhH
Confidence 689999999999999999999999999863 2222221222 333 66677889 444544456778899999999
Q ss_pred hhhHHHHHHHHhhCH-HHHHHHHHHHHHHhcCCCCChHHHHHHHHhccC---CcHHH-HHhhhccCCCcceEEEEEeCCE
Q 008697 75 KGASVIRMLQNYLGA-ECFQRSLASYIKKYACSNAKTEDLWAALEEGSG---EPVNK-LMNSWTKQKGYPVISVKVKEEK 149 (557)
Q Consensus 75 Kga~vl~Ml~~~iG~-~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~---~~~~~-~~~~W~~q~G~P~v~v~~~~~~ 149 (557)
||++|||||+..||+ +.|++||+.|+++|+|++++++|||+++++++| .++.. +|++|++|+|||+ +++.+.+.
T Consensus 392 KGa~vL~mL~~~lG~~e~F~~~Lr~Yl~~~~~~~~tt~Df~~~l~~~~~~~~~~l~~~~~~~W~~~~G~P~-~~~~~~~~ 470 (632)
T 2xq0_A 392 KGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP-RPHFITAL 470 (632)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTEEECHHHHHHHHHHHCGGGHHHHHTSCHHHHHHCCSCCC-CCCCCCHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhhhccccccHHHHHHHhcCCCCCC-CcCCCchH
Confidence 999999999999999 999999999999999999999999999999987 46776 6999999999999 76654311
Q ss_pred ---EEEEEeeccCCCCCCCceEEEEEEEEecCCCceeeEEecCCccEEEcccccccccCCCCCCCCceEecCCceeeEEE
Q 008697 150 ---LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRV 226 (557)
Q Consensus 150 ---~~i~Q~rf~~~~~~~~~~W~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV 226 (557)
+..-+.||...... .... .. .+ . .++ +. +. .
T Consensus 471 ~~~~~~l~~~w~~~~~~-------------~~~~--~~--~~---~--~~~----------~~--d~------------~ 504 (632)
T 2xq0_A 471 ADNVYQLADKWVEMAQH-------------LKTT--ED--FR---S--EFN----------AI--DI------------K 504 (632)
T ss_dssp HHHHHHHHHHHHHHTTT-------------CCSH--HH--HH---H--HCC----------GG--GG------------T
T ss_pred HHHHHHHHHHHHhcccc-------------cccc--cc--cc---c--CCC----------HH--HH------------h
Confidence 00111122110000 0000 00 00 0 000 00 11 1
Q ss_pred EcCHHHHHHHHHHHhcC------------CCCHHhhHHHHHHHHH--HHHcCCCChHHHHHHHHhcccCCChhhHHHHHH
Q 008697 227 KYDKDLAARLGYAIEMK------------QLSETDRFGILDDHFA--LCMARQQTLTSLLTLMASYSEETEYTVLSNLIT 292 (557)
Q Consensus 227 ~Yd~~~~~~l~~~l~~~------------~i~~~~r~~li~D~~~--la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~ 292 (557)
+|+...|..+++.|..+ .|+ .+++++|+|+++ |+.+ .+.++.++.+.++-++....+|..+..
T Consensus 505 ~~~~~~~~~fl~~l~~~~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~~--~n~ei~~~~~~~~~~~~~~~~~~~~~~ 581 (632)
T 2xq0_A 505 DFNSNQLVLFLETLTQNGHSNKKPKDFDWAKF-PVASRALLDIYQDNIVKS--QNAEVVFKMFKFQIFAKLQEEYKHLAD 581 (632)
T ss_dssp TCCHHHHHHHHHHHHTTCSSTTSCSCCCGGGC-HHHHHHHHHHTCCCCCTC--CCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcccccccccccCCCCC-HHHHHHHHHHHhhhhccC--cCHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 78899999999998742 365 899999999998 6544 455899999999989999999998886
Q ss_pred HHHHHHh
Q 008697 293 ISYKIGR 299 (557)
Q Consensus 293 ~l~~l~~ 299 (557)
.|..+.+
T Consensus 582 ~l~~~gr 588 (632)
T 2xq0_A 582 WLGTVGR 588 (632)
T ss_dssp HTTTCCC
T ss_pred HHHHcCC
Confidence 5544444
No 11
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=99.95 E-value=1.1e-29 Score=277.34 Aligned_cols=157 Identities=25% Similarity=0.398 Sum_probs=136.5
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhhCCchhhHHHHHHHhH-hhhhhcccCCCCCeeeecCCcccc--cccccccccchhh
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEI--DEIFDAISYRKGA 77 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~~p~~~~~~~f~~~~~-~al~~D~~~~s~pi~~~~~~~~~i--~~~Fd~i~Y~Kga 77 (557)
|+||+|+|||||||+|+++++++.++|++.....++.... .....|+..++||+..++.++.++ +.+||.++|.||+
T Consensus 306 ~~~W~d~WLnEGfAty~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~i~Y~KGa 385 (608)
T 3u9w_A 306 NKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYEKGF 385 (608)
T ss_dssp ESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGSSSCCCTTCCHHHHCSSHHHHHHH
T ss_pred cccccchhHHHhHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhhhccCCccccccccccCChhhcccHHHHhHHH
Confidence 6899999999999999999999999998766555544332 455678888999998887776655 5689999999999
Q ss_pred HHHHHHHHhhC-HHHHHHHHHHHHHHhcCCCCChHHHHHHHHhccCCcHHHH----HhhhccCCCcceEEEEEeC----C
Q 008697 78 SVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKL----MNSWTKQKGYPVISVKVKE----E 148 (557)
Q Consensus 78 ~vl~Ml~~~iG-~~~F~~gl~~yl~~~~~~na~~~dl~~~l~~~~~~~~~~~----~~~W~~q~G~P~v~v~~~~----~ 148 (557)
+|||||+..|| ++.|++||+.|+++|+|+|++++|||++++++++.++..+ |++|++|+|||+|+|+++. .
T Consensus 386 ~vL~mL~~~lG~~~~F~~~lr~Yl~~~~~~~~tt~Df~~~l~~~~~~~~~~~~~~~~~~W~~~~G~P~v~v~~d~~~~~~ 465 (608)
T 3u9w_A 386 ALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNA 465 (608)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHTGGGHHHHHTSCHHHHHHCCSSCSSCCCCCCTTTHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccchhhHHHHHHHhcCCCCCceeeeeccccccc
Confidence 99999999998 7899999999999999999999999999999999998877 9999999999999998762 3
Q ss_pred EEEEEEeec
Q 008697 149 KLELEQSQF 157 (557)
Q Consensus 149 ~~~i~Q~rf 157 (557)
.++++|+++
T Consensus 466 ~~~l~q~~~ 474 (608)
T 3u9w_A 466 CIALSQRWI 474 (608)
T ss_dssp HHHHHHHHH
T ss_pred eeeHHhHHh
Confidence 466777654
No 12
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.20 E-value=3.6e-11 Score=129.90 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=92.9
Q ss_pred CCCCChhhhhHhHHHHHHHHHHhhh--CCchhhHHHHHHHhHhhhhhcccCCCCCeeeec-------CCccccccccccc
Q 008697 1 MEWWTHLWLNEGFATWVSYLAADSL--FPEWKIWTQFLDECTEGLRLDGLAESHPIEVEV-------NHTGEIDEIFDAI 71 (557)
Q Consensus 1 m~WW~dlWLnEgfAty~~~~~~~~~--~p~~~~~~~f~~~~~~al~~D~~~~s~pi~~~~-------~~~~~i~~~Fd~i 71 (557)
+.||+++||+||||+|++.++.... .+.-..... +......+........+|+...- ..+++-...+...
T Consensus 297 ~~~~~~lWl~EG~t~Y~~~l~~~r~G~~~~~~~~~~-l~~~i~~~~~~~gr~~~sl~~ss~~aw~~~yr~~~n~~n~~~s 375 (597)
T 4fgm_A 297 ESYTEQLWFYEGMTSYFDDYLLHTSGIIDEKRYLKL-LGDTLSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVS 375 (597)
T ss_dssp CCCCSTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHH-HHHHHHHHHHSGGGGTCCHHHHHHTCCCCCTTCCTTHHHHCCC
T ss_pred ccccccchhhhhHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHHhhcCCCccccChHHcCchhhhccccCCcccCCcccc
Confidence 4689999999999999999987653 222111111 11111111111111223332100 0011100111234
Q ss_pred ccchhhHHHHHHHHhhCHH-----HHHHHHHHHHHHhcC--CCCChHHHHHHHHhccCCcHHHHHhhhccCCCcc
Q 008697 72 SYRKGASVIRMLQNYLGAE-----CFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYP 139 (557)
Q Consensus 72 ~Y~Kga~vl~Ml~~~iG~~-----~F~~gl~~yl~~~~~--~na~~~dl~~~l~~~~~~~~~~~~~~W~~q~G~P 139 (557)
.|.||+.|++||...|+++ .|+++||.|.++|.+ ++++++||.+.+++++|.++.+|++.|++.++.|
T Consensus 376 ~Y~KGalv~~~LD~~lR~~s~g~~sldd~mr~l~~~~~~~~~~~t~~d~~~~~e~~sG~dl~~ff~~~l~~t~~~ 450 (597)
T 4fgm_A 376 YYAKGALIALSLDLMLRLQSDHKLTLARVMKELWHEFGKTSIGTADDTVINWLNQYPGIDISDFLKDALYNKESL 450 (597)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHTTTTCCBCTTHHHHHHHTSTTCCCHHHHHHHHHSCSCC
T ss_pred cchHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHhcCcCHHHHHHHHHhCCCCc
Confidence 6999999999998888664 799999999999975 6899999999999999999999999999999975
No 13
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.39 E-value=14 Score=32.58 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHH
Q 008697 340 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 419 (557)
Q Consensus 340 ~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~ 419 (557)
...|...+..++..|.++.+....+. +.+ -++..|..+.....+.+ +......+.+... ..++.-|.
T Consensus 28 ~~vr~~A~~~L~~~~~~~~~~~L~~~----l~~-----~~~~vr~~a~~~L~~~~---~~~~~~~L~~~l~-d~~~~vr~ 94 (201)
T 3ltj_A 28 YYVRRAAAYALGKIGDERAVEPLIKA----LKD-----EDAWVRRAAADALGQIG---DERAVEPLIKALK-DEDGWVRQ 94 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHH----TTC-----SSHHHHHHHHHHHHHHC---CGGGHHHHHHHTT-CSSHHHHH
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH----HcC-----CCHHHHHHHHHHHHhhC---CHHHHHHHHHHHc-CCCHHHHH
Confidence 35677778888888886655444333 332 25678887776666655 6667777777664 45777888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhccc--cccccchhhhh--cCcccHHHHHHHHHHhHHHHHHHhCCC-cchh-hHHHhh
Q 008697 420 RILSSLASCPDVNIVLEVLNFLLSSE--VRSQDAVYGLA--VSIEGRETAWKWLKDNWDHISKTWGSG-FLIT-RFISSI 493 (557)
Q Consensus 420 ~ll~aLac~~d~~ll~~~L~~~l~~~--i~~qd~~~~~~--~~~~~~~~~w~fl~~N~~~i~~~~~~~-~~l~-~iv~~~ 493 (557)
..+.+|+...++..+..++..+-++. +|.. ....+. ..+..... +.+.+.+. ..+. ..+..
T Consensus 95 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~-a~~aL~~~~~~~~~~~-----------L~~~l~d~~~~vr~~A~~a- 161 (201)
T 3ltj_A 95 SAAVALGQIGDERAVEPLIKALKDEDWFVRIA-AAFALGEIGDERAVEP-----------LIKALKDEDGWVRQSAADA- 161 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHH-HHHHHHHHTCGGGHHH-----------HHHHTTCSSHHHHHHHHHH-
T ss_pred HHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHH-HHHHHHHhCCHHHHHH-----------HHHHHcCCCHHHHHHHHHH-
Confidence 89999988877766666655443322 2211 111112 22222222 23333222 2222 23333
Q ss_pred ccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 008697 494 VSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERVQ 530 (557)
Q Consensus 494 ~~~~~t~~~~~~~~~F~~~~~~~~~~~~~~~~le~i~ 530 (557)
.+.+.+++-+..+..++.+.. +.++....+++.+++
T Consensus 162 L~~~~~~~~~~~L~~~l~d~~-~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 162 LGEIGGERVRAAMEKLAETGT-GFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHCSHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCC
T ss_pred HHHhCchhHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 334566777777777776533 334444455555443
No 14
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.58 E-value=21 Score=31.70 Aligned_cols=163 Identities=16% Similarity=0.141 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHH
Q 008697 340 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 419 (557)
Q Consensus 340 ~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~ 419 (557)
...|...+..++..|.++++....+ .+.+ -++.+|..+.....+.+ +......+.+.. ++.++.-|.
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~----~l~~-----~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l-~~~~~~vr~ 99 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIK----ALKD-----EDAWVRRAAADALGQIG---DERAVEPLIKAL-KDEDGWVRQ 99 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHH----HTTC-----SCHHHHHHHHHHHHHHC---CGGGHHHHHHHT-TCSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHH----HHcC-----CCHHHHHHHHHHHHhhC---CHHHHHHHHHHH-cCCCHHHHH
Confidence 4567778888888888665544433 3332 26778887777666665 666777777765 455677788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHhhccc--cccccchhhhh--cCcccHHHHHHHHHHhHHHHHHHhCCC-cchhhHHHhhc
Q 008697 420 RILSSLASCPDVNIVLEVLNFLLSSE--VRSQDAVYGLA--VSIEGRETAWKWLKDNWDHISKTWGSG-FLITRFISSIV 494 (557)
Q Consensus 420 ~ll~aLac~~d~~ll~~~L~~~l~~~--i~~qd~~~~~~--~~~~~~~~~w~fl~~N~~~i~~~~~~~-~~l~~iv~~~~ 494 (557)
..+.+|+...++..+..++..+-++. +|..- ...+. ..+.....+ .+.+.+. ..+........
T Consensus 100 ~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a-~~aL~~~~~~~~~~~L-----------~~~l~d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 100 SAAVALGQIGDERAVEPLIKALKDEDWFVRIAA-AFALGEIGDERAVEPL-----------IKALKDEDGWVRQSAADAL 167 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH-HHHHHHHCCGGGHHHH-----------HHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHH-HHHHHHcCCHHHHHHH-----------HHHHcCCCHHHHHHHHHHH
Confidence 89999988877766666666543332 33211 11122 233333332 2333222 22222222223
Q ss_pred cCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 008697 495 SPFASYEKVREVEEFFSSRCKPYIARTLRQSIER 528 (557)
Q Consensus 495 ~~~~t~~~~~~~~~F~~~~~~~~~~~~~~~~le~ 528 (557)
+.+.+++-+..+...+.+.. +.++....++|..
T Consensus 168 ~~~~~~~~~~~L~~~l~d~~-~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 168 GEIGGERVRAAMEKLAETGT-GFARKVAVNYLET 200 (211)
T ss_dssp HHHCSHHHHHHHHHHHHHCC-HHHHHHHHHHHHC
T ss_pred HHhCchhHHHHHHHHHhCCC-HHHHHHHHHHHHh
Confidence 34566777777777776533 3344444444444
No 15
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=67.73 E-value=47 Score=38.07 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHcCC--CCCCCChhhHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCCHHH-HH
Q 008697 344 GEIFTALALLGHKETLNEASKRFHAFLADR--TTPLLPPDIRKAAYVAVMQKVSASD-RSGYESLLRVYRETDLSQE-KT 419 (557)
Q Consensus 344 ~~il~~ac~~g~~~c~~~a~~~f~~~~~~~--~~~~i~~dlr~~vyc~~~~~~~~~~-~~~~~~l~~~y~~s~~~~e-k~ 419 (557)
...|..++-.|++..+. .+..++.+. .....|..+|..+.- +++.-.... ...-+.++..|.+...+.| |.
T Consensus 458 ~~~LkaLGN~g~p~~l~----~l~~~l~~~~~~~~~~~~rvr~aAi~-ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 458 VLALKALGNAGQPNSIK----KIQRFLPGQGKSLDEYSTRVQAEAIM-ALRNIAKRDPRKVQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp HHHHHHHHHHTCGGGHH----HHHTTSTTSSSCCCCSCHHHHHHHHH-TTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHhhccCChhHHH----HHHHhhcCccccccccchHHHHHHHH-HHHHhhhhchHHHHHHHHHHhcCCCCChHHHH
Confidence 45666777777775433 344555432 123345566544422 344321111 2355667788876665555 44
Q ss_pred H-HHHHhcCCCCHHHHHHHHHHhhc
Q 008697 420 R-ILSSLASCPDVNIVLEVLNFLLS 443 (557)
Q Consensus 420 ~-ll~aLac~~d~~ll~~~L~~~l~ 443 (557)
. ++..|-|.++...++++.+.+-.
T Consensus 533 aA~~~Lm~t~P~~~~l~~ia~~l~~ 557 (1056)
T 1lsh_A 533 RSCIVFFESKPSVALVSMVAVRLRR 557 (1056)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 4 44444577888888888777654
No 16
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.13 E-value=59 Score=28.54 Aligned_cols=89 Identities=22% Similarity=0.192 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHH
Q 008697 340 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 419 (557)
Q Consensus 340 ~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~ 419 (557)
..+|..++..++..|.+.++....+ .+.+ -++.+|..+.....+.+ +.+....+.+.. +..++.-|.
T Consensus 64 ~~vr~~a~~aL~~~~~~~~~~~L~~----~l~~-----~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l-~d~~~~vr~ 130 (211)
T 3ltm_A 64 AWVRRAAADALGQIGDERAVEPLIK----ALKD-----EDGWVRQSAAVALGQIG---DERAVEPLIKAL-KDEDWFVRI 130 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHH----HTTC-----SSHHHHHHHHHHHHHHC---CGGGHHHHHHHT-TCSSHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH----HHcC-----CCHHHHHHHHHHHHHhC---cHHHHHHHHHHH-hCCCHHHHH
Confidence 4567777888888887765544433 3332 25678887777666665 666677777755 556677788
Q ss_pred HHHHHhcCCCCHHHHHHHHHHh
Q 008697 420 RILSSLASCPDVNIVLEVLNFL 441 (557)
Q Consensus 420 ~ll~aLac~~d~~ll~~~L~~~ 441 (557)
..+.+|+...++..+..++..+
T Consensus 131 ~a~~aL~~~~~~~~~~~L~~~l 152 (211)
T 3ltm_A 131 AAAFALGEIGDERAVEPLIKAL 152 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888877776666555544
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.67 E-value=1.5e+02 Score=25.57 Aligned_cols=170 Identities=15% Similarity=0.095 Sum_probs=97.3
Q ss_pred EEcCHHHHHHHHHHHhcCCCCHHhhHHHHHHHHHHHHcCCCChHHHHHHHHhcccCCChhhHHHHHHHHHHHHhhhcccC
Q 008697 226 VKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADAR 305 (557)
Q Consensus 226 V~Yd~~~~~~l~~~l~~~~i~~~~r~~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~vw~~~~~~l~~l~~~~~~~~ 305 (557)
...++.....+++.|... ++..|...+.- |...|.- ...-.++..|. +.+..+-..+...+..+. .
T Consensus 9 ~~~~~~~~~~~i~~L~~~--~~~vr~~A~~~---L~~~~~~--~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~------~ 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDD--SYYVRRAAAYA---LGKIGDE--RAVEPLIKALK-DEDAWVRRAAADALGQIG------D 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCS--CHHHHHHHHHH---HHHHCCG--GGHHHHHHHTT-CSSHHHHHHHHHHHHHHC------C
T ss_pred cccCCcchHHHHHHhcCC--CHHHHHHHHHH---HHhcCCh--hHHHHHHHHHc-CCCHHHHHHHHHHHHhhC------C
Confidence 445667778888887653 45666655544 4444432 22233445564 445555555553332221 1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHhCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHH
Q 008697 306 PELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKA 385 (557)
Q Consensus 306 ~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~il~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~ 385 (557)
++....+. ..+. ++ +..+|..++..++..|.+.++.... ..+.+ -++.+|..
T Consensus 75 ~~~~~~L~-----------~~l~-----d~---~~~vr~~a~~aL~~~~~~~~~~~L~----~~l~d-----~~~~vr~~ 126 (201)
T 3ltj_A 75 ERAVEPLI-----------KALK-----DE---DGWVRQSAAVALGQIGDERAVEPLI----KALKD-----EDWFVRIA 126 (201)
T ss_dssp GGGHHHHH-----------HHTT-----CS---SHHHHHHHHHHHHHHCCGGGHHHHH----HHTTC-----SSHHHHHH
T ss_pred HHHHHHHH-----------HHHc-----CC---CHHHHHHHHHHHHHhCcHHHHHHHH----HHHcC-----CCHHHHHH
Confidence 22222221 1121 11 2457888888888888876554433 33332 25678877
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHh
Q 008697 386 AYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFL 441 (557)
Q Consensus 386 vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aLac~~d~~ll~~~L~~~ 441 (557)
+..+..+.+ +......+.+... ..++.-|..++.+|+...++..+..+...+
T Consensus 127 a~~aL~~~~---~~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l 178 (201)
T 3ltj_A 127 AAFALGEIG---DERAVEPLIKALK-DEDGWVRQSAADALGEIGGERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHT---CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHhC---CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 766655554 6666777776654 456777888999999888887766555544
No 18
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=43.94 E-value=90 Score=28.76 Aligned_cols=170 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHH
Q 008697 339 DALLRGEIFTALALLG--HKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQ 416 (557)
Q Consensus 339 ~~~lr~~il~~ac~~g--~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~ 416 (557)
+..+|..++..++..| .+.+...+...+...+.++ ++.+|..+..+....+ +......+.+... ..++.
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~-----~~~vR~~a~~aL~~~~---~~~~~~~L~~~l~-d~~~~ 174 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK-----STNVRRATAFAISVIN---DKATIPLLINLLK-DPNGD 174 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHTC------CCHHHHHHHHT-CSSHH
T ss_pred CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC-----CHHHHHHHHHHHHhcC---CHHHHHHHHHHHc-CCCHH
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHhhccc--cccccchhhhh-cCcccHHHHHHHHHHhHHHHHHHhCCCcchhhHHH
Q 008697 417 EKTRILSSLASCP--DVNIVLEVLNFLLSSE--VRSQDAVYGLA-VSIEGRETAWKWLKDNWDHISKTWGSGFLITRFIS 491 (557)
Q Consensus 417 ek~~ll~aLac~~--d~~ll~~~L~~~l~~~--i~~qd~~~~~~-~~~~~~~~~w~fl~~N~~~i~~~~~~~~~l~~iv~ 491 (557)
-|...+.+|+... ++..+..++..+-++. +|..-+..+-. ..+.....+.+.+.+ ..+.....
T Consensus 175 vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d------------~~vr~~a~ 242 (280)
T 1oyz_A 175 VRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK------------NTVYDDII 242 (280)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS------------SSCCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC------------ccHHHHHH
Q ss_pred hhccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 008697 492 SIVSPFASYEKVREVEEFFSSRCKPYIARTLRQSIERV 529 (557)
Q Consensus 492 ~~~~~~~t~~~~~~~~~F~~~~~~~~~~~~~~~~le~i 529 (557)
...+.+.+++-+..+.+++.+++.+.+.+..-+++++|
T Consensus 243 ~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~~~ 280 (280)
T 1oyz_A 243 EAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKRS 280 (280)
T ss_dssp HHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTCC
T ss_pred HHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHHhhcC
No 19
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=40.34 E-value=4.4e+02 Score=29.58 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCCCCChhhHH-HHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHH
Q 008697 340 ALLRGEIFTALA-LLGHKETLNEASKRFHAFLADRTTPLLPPDIRK-AAYVAVMQKVSASDRSGYESLLRVYRETDLSQE 417 (557)
Q Consensus 340 ~~lr~~il~~ac-~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~-~vyc~~~~~~~~~~~~~~~~l~~~y~~s~~~~e 417 (557)
...|..++.++. .+|.++-++...+.+.. + -+|.+|. .+++.|+.+.+.|+....+.|+....+..+..-
T Consensus 523 ~vrR~aalgLGll~~g~~e~~~~li~~L~~---~-----~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~V 594 (963)
T 4ady_A 523 NITRGLAVGLALINYGRQELADDLITKMLA---S-----DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDV 594 (963)
T ss_dssp HHHHHHHHHHHHHTTTCGGGGHHHHHHHHH---C-----SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHh---C-----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHH
Confidence 344556666554 35666544444444332 1 2455554 356667777656677777778877776666666
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHhh
Q 008697 418 KTRILSSLAS--CPDVNIVLEVLNFLL 442 (557)
Q Consensus 418 k~~ll~aLac--~~d~~ll~~~L~~~l 442 (557)
|...+-|||. ..+++.+.+++..+.
T Consensus 595 RraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 595 RRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 7777777773 445555666655444
Done!