Query 008699
Match_columns 557
No_of_seqs 219 out of 475
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 15:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02703 beta-fructofuranosida 100.0 1E-133 3E-138 1069.5 34.1 518 1-553 1-521 (618)
2 PF12899 Glyco_hydro_100: Alka 100.0 1E-122 3E-127 964.5 29.2 379 167-552 1-379 (436)
3 PLN03005 beta-fructofuranosida 100.0 8E-118 2E-122 943.2 31.9 390 159-553 79-468 (550)
4 PLN02973 beta-fructofuranosida 100.0 7E-118 1E-122 945.2 30.8 389 159-553 101-489 (571)
5 TIGR01561 gde_arch glycogen de 100.0 2.6E-55 5.7E-60 481.9 23.9 275 195-548 286-575 (575)
6 PF06202 GDE_C: Amylo-alpha-1, 100.0 7.1E-53 1.5E-57 441.6 26.4 285 182-552 15-315 (370)
7 TIGR01531 glyc_debranch glycog 100.0 4.7E-47 1E-51 439.7 22.5 291 196-551 1026-1398(1464)
8 COG3408 GDB1 Glycogen debranch 100.0 4.5E-39 9.7E-44 357.7 25.6 297 158-550 244-551 (641)
9 KOG3625 Alpha amylase [Carbohy 99.9 5E-24 1.1E-28 237.2 15.4 287 198-551 1077-1450(1521)
10 PRK10137 alpha-glucosidase; Pr 99.9 6.4E-20 1.4E-24 207.6 28.0 315 160-550 305-726 (786)
11 TIGR01577 oligosac_amyl oligos 99.7 1.5E-14 3.2E-19 161.5 27.2 203 162-406 255-460 (616)
12 PF05592 Bac_rhamnosid: Bacter 99.3 1.2E-10 2.5E-15 126.6 17.0 196 160-406 118-321 (509)
13 PRK13271 treA trehalase; Provi 99.2 3.8E-09 8.2E-14 117.6 22.5 286 162-549 120-470 (569)
14 PF04685 DUF608: Protein of un 99.1 2E-10 4.4E-15 121.6 7.9 116 285-406 95-213 (365)
15 COG3459 Cellobiose phosphoryla 98.9 2.9E-08 6.2E-13 114.1 18.2 263 206-539 615-904 (1056)
16 PLN02567 alpha,alpha-trehalase 98.8 4.7E-07 1E-11 101.0 23.2 265 198-550 148-476 (554)
17 PRK13272 treA trehalase; Provi 98.7 2.7E-06 5.9E-11 94.6 22.2 286 161-549 120-470 (542)
18 PRK13270 treF trehalase; Provi 98.6 1E-05 2.2E-10 90.3 23.0 251 198-550 167-480 (549)
19 PF01204 Trehalase: Trehalase; 98.5 2.8E-06 6.1E-11 94.0 18.2 259 198-550 124-445 (512)
20 COG3387 SGA1 Glucoamylase and 98.5 8.4E-06 1.8E-10 92.2 21.9 180 200-405 282-462 (612)
21 TIGR01535 glucan_glucosid gluc 98.5 6.5E-05 1.4E-09 85.6 26.3 196 160-407 248-450 (648)
22 PF06824 DUF1237: Protein of u 97.7 0.0006 1.3E-08 74.1 13.4 223 180-422 29-295 (424)
23 PF03200 Glyco_hydro_63: Manno 97.3 0.014 3E-07 68.5 18.8 177 351-551 545-734 (801)
24 COG1626 TreA Neutral trehalase 97.1 0.068 1.5E-06 59.8 21.4 109 356-508 352-460 (558)
25 COG3538 Uncharacterized conser 96.9 0.016 3.5E-07 61.9 13.9 206 202-422 60-293 (434)
26 PF00723 Glyco_hydro_15: Glyco 96.7 0.38 8.2E-06 52.4 22.5 183 184-399 23-224 (448)
27 COG4354 Predicted bile acid be 96.5 0.011 2.4E-07 66.3 9.6 203 181-405 339-566 (721)
28 KOG0602 Neutral trehalase [Car 95.9 0.4 8.7E-06 54.6 17.7 171 197-409 180-407 (600)
29 KOG2161 Glucosidase I [Carbohy 94.1 1.9 4.1E-05 50.3 16.7 182 344-550 584-777 (849)
30 KOG2119 Predicted bile acid be 83.9 3.8 8.2E-05 47.8 8.3 97 302-405 570-670 (879)
31 KOG2940 Predicted methyltransf 35.2 30 0.00064 36.2 2.6 113 80-259 177-291 (325)
32 PF03632 Glyco_hydro_65m: Glyc 26.5 1.4E+02 0.0031 32.6 6.1 154 198-379 28-195 (370)
33 cd00249 AGE AGE domain; N-acyl 21.6 5.6E+02 0.012 26.7 9.4 99 290-404 54-152 (384)
No 1
>PLN02703 beta-fructofuranosidase
Probab=100.00 E-value=1.5e-133 Score=1069.47 Aligned_cols=518 Identities=71% Similarity=1.174 Sum_probs=479.8
Q ss_pred CchhHHHHHHhcCCCCccccccCCCCCCCcccCcchhhhhhccchhhcccccccchhhhcccccccccCCCcCCC---Cc
Q 008699 1 MGTSEAVLQVLSGANPLLFNSAKCSGNLDATFPSRFLYKYTKKRVSRYKRLFNCSSTLQSDLGLNWLKGLGYGLS---GC 77 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (557)
|.|||+|||+++|+++..++++.+|+|+.... .|+ ..+|++..+.+...+....+..++...-+++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (618)
T PLN02703 1 MAASETVLRVPLGSLSQSCYLASFFVNSTPNL--SFK-------PVSYNRKKVRCTNSHEYSSVSACQDADGSFHSSNEC 71 (618)
T ss_pred CchhhhHHhccccccCCcchhhhhhcCCcccc--ccc-------cccccccccccccccceeccCcccccccccccchhh
Confidence 89999999999999999999999999977664 222 5566666666666777777788877764444 45
Q ss_pred ccccccccccccccccccccCccccCCCCceeeeccccccccccCCCCccccchhhhhhhhhhhccccCCCCCccccccc
Q 008699 78 REVNRLQLLSCKCQQAESVSGLTAEDGNGTWFVDSAKKLNLKSVANTPNILEFQDVQQFEQEKKSFTSNGAAGTTIDSVS 157 (557)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (557)
.+.+++..++||||+++..++.. ...+++||+.++-. --.+ +.+++||++|+..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~----- 127 (618)
T PLN02703 72 LKGKKFVQMRCKCQKHDVEESIR------------STLLPSDGLKSDLD---EMPL----PVNGSFSSNGNAQSV----- 127 (618)
T ss_pred hhhhhHHHHhhhhhhhhhhcccc------------cccccccccccccc---cccC----cccCcCCCCCccccc-----
Confidence 56899999999999999888776 78899988876421 1111 778889988866555
Q ss_pred ccchHHHHHHHHHHHHHhhcccCCCcceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhh
Q 008699 158 KATVDCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSW 237 (557)
Q Consensus 158 ~~~~~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~ 237 (557)
..++++++||++||+|+|+|+|+|+||+||.|+.+..++||++||+||++||++++|++|++||||+||.++++||++
T Consensus 128 --~~~~~~~eA~elL~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~tL~lq~~ 205 (618)
T PLN02703 128 --GTKSIEDEAWDLLRQSVVFYCGSPIGTIAANDPSSTSVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILYTLQLQSW 205 (618)
T ss_pred --CCChHHHHHHHHHHHhhhhhcCccceeEeccCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHhhhhh
Confidence 778999999999999999999999999999998654569999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHH
Q 008699 238 EKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQ 317 (557)
Q Consensus 238 ~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~ 317 (557)
+|+||+|++++|+||+||||.|+|+++++.++|++++||||+++|||+++|||+|||||++++|.++|||.+|++++++|
T Consensus 206 ektld~~q~g~G~mPaSfkv~~~~~~~~~~~~ee~l~aDfGe~AIgRV~pVDS~LWWIIllraY~k~TgD~sf~e~~~~Q 285 (618)
T PLN02703 206 EKTMDCHSPGQGLMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCTGDLSVQERVDVQ 285 (618)
T ss_pred HHHHHhccCCCCCcCceeeecccccccccccccccccCCcCccceeeeccccchhHHHHHHHHHHHhhccHHHhhhhhHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcceecCCCcccccccCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 008699 318 TGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSF 397 (557)
Q Consensus 318 ~~ik~IL~~~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~ 397 (557)
++|++||++|++++|+++|+++|+||++|||+|||++|||+|||||||+||||+.+|+....+..+.++++.+|+.+|++
T Consensus 286 ~gI~liL~LcLa~~Fd~fPtLlVpDgs~miDRrMgv~G~PLEiQaLfy~ALR~a~~~L~~~~~~~e~i~~i~~rl~~L~~ 365 (618)
T PLN02703 286 TGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALVCAREMLTPEDGSVDLIRALNNRLVALNF 365 (618)
T ss_pred HHHHHHHHHHccCcCCCCceEeccCCCchhccccCcCCccHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999998866778999999999999999
Q ss_pred HHHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCC
Q 008699 398 HIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGL 477 (557)
Q Consensus 398 ~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gL 477 (557)
|++++||+|.+++|+||||+||+|+++|+|+|||+|++||+||+||||++||||+|||+|++||||||++||+||+++||
T Consensus 366 hir~~yWld~~~ln~iyRykteey~~~A~NkfNi~p~siP~WL~dwlp~~gGYligNv~Pa~mDfRffsLGNlLAILs~L 445 (618)
T PLN02703 366 HIREYYWLDLKKINEIYRYQTEEYSYDAVNKFNIYPDQIPSWLVDFMPNRGGYLIGNLQPAHMDFRFFTLGNLWSIVSSL 445 (618)
T ss_pred HHHHHHhhcHHHhhHHHhhhhhhcchhhhhhcccCCCCcchHhhhhccccCceeeeeecccccccchhhhhhHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHHHHHhhhc
Q 008699 478 ATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHGSIVGLYV 553 (557)
Q Consensus 478 l~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A~lk~~~v 553 (557)
++++|+++||++|+++|++|++.||||+|+|||++++||++|++||||.||||||||+||+|+|+|++|++|+=+.
T Consensus 446 at~~Qs~aIm~lIe~~w~~Lvg~MPlkIcyPaie~~EWRi~TG~DpKN~PWSYHNGGsWP~LlWf~~aA~iK~Gr~ 521 (618)
T PLN02703 446 ATNDQSHAILDLIEAKWAELVADMPLKICYPAMEGEEWRIITGSDPKNTPWSYHNGGAWPTLLWQLTVASIKMGRP 521 (618)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCccccccCCcCCccceeeeCcCCCCCCccccCCCcchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998654
No 2
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=100.00 E-value=1.2e-122 Score=964.51 Aligned_cols=379 Identities=69% Similarity=1.244 Sum_probs=370.9
Q ss_pred HHHHHHHHhhcccCCCcceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCC
Q 008699 167 EAWNLLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSP 246 (557)
Q Consensus 167 ~A~~lLr~~~~~~~~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~ 246 (557)
+||++|++|+|+|+|+|+|||||.|+++.+++||++||.||++||++++|++|++|||||||..+++||+++|+||+|++
T Consensus 1 ~a~~~l~~s~v~~~g~pvGtvAa~d~~~~~~lNY~qvF~RDfvps~l~fL~~g~~eIVrnFL~~tl~Lq~~~~~~d~~~~ 80 (436)
T PF12899_consen 1 EAWELLERSIVYYQGQPVGTVAALDPSAEEALNYDQVFVRDFVPSALAFLMKGEPEIVRNFLLETLQLQSWEKQVDCFKP 80 (436)
T ss_pred ChHHHHhhheEeeCCceeeeeeecCCcccccccccceEeecChHHHHHHHHcCCHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 59999999999999999999999999876899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHH
Q 008699 247 GQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKL 326 (557)
Q Consensus 247 ~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~ 326 (557)
++|+||+||||.|++ ++++++|||||++|||+.+|||+|||||+|++|+|+|||.+|.+++++|++|++||++
T Consensus 81 g~G~mPaSFkv~~~~-------~~e~l~aDfGe~AIgRv~pVDs~~WWiillraY~k~tgD~s~~~~~~~Q~gi~liL~l 153 (436)
T PF12899_consen 81 GRGVMPASFKVLHEN-------EEETLIADFGERAIGRVAPVDSGLWWIILLRAYVKATGDYSLAESPEVQRGIRLILDL 153 (436)
T ss_pred CCCcccceEEEecCC-------CCceEecCcchhhhccccCcccccHHHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHH
Confidence 999999999999764 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCcceecCCCcccccccCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Q 008699 327 CLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWID 406 (557)
Q Consensus 327 ~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d 406 (557)
|++++|+++|+++|+||+||||||||++|||+|||||+|+||||+.+|+....+.++.++++.+|+.+|++|+++|||+|
T Consensus 154 cL~~~Fd~~PtLlvpDg~~MiDRrMgv~G~PlEiQ~Lf~~aLr~a~~ll~~~~~~~~~~~~i~~rl~~L~~h~r~~yWld 233 (436)
T PF12899_consen 154 CLADGFDMFPTLLVPDGACMIDRRMGVYGHPLEIQALFYMALRCARELLKPDEEGKDLIERIDKRLHALSFHIREYYWLD 233 (436)
T ss_pred HcccccCCCceEEecCCceeecccccccCCcchHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999866778899999999999999999999999
Q ss_pred ccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCCCCHHHHHHH
Q 008699 407 LRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAI 486 (557)
Q Consensus 407 ~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~aV 486 (557)
.++||+||||+||+|+++|+|||||+||+||+||+||||++||||+||++|++||||||++||+||+++||+|++|+++|
T Consensus 234 ~~~ln~iyr~~teey~~~a~N~fNi~p~~ip~wl~dwlp~~gGY~ignv~P~~~dfRff~lGNlLAiLsgLat~~qa~~I 313 (436)
T PF12899_consen 234 LKRLNEIYRYKTEEYGHTAVNKFNIYPDSIPDWLFDWLPEKGGYFIGNVSPARMDFRFFSLGNLLAILSGLATPEQAEAI 313 (436)
T ss_pred HHHHHHHHhccHhhhhhhhhhcccCCcccchHHHHHhcccCCceeEeeccccccceeehhhhhHHHHHhcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHHHHHhhh
Q 008699 487 LDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHGSIVGLY 552 (557)
Q Consensus 487 ld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A~lk~~~ 552 (557)
|++|+++|++|+++||||+|+|||++++||++|++||+|+||||||||+||+|+|+|++|++|+-+
T Consensus 314 ~~lIe~~~~~L~g~mPlki~yPale~~eWri~tg~dpKN~PwsYHNGG~WP~LlW~~~aA~ik~gr 379 (436)
T PF12899_consen 314 MDLIEERWEDLVGPMPLKICYPALEGEEWRIYTGCDPKNTPWSYHNGGSWPVLLWFLTAALIKMGR 379 (436)
T ss_pred HHHHHHHHhhhccccchhhccCCCCCCCCccccCcCcCccccccccCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999643
No 3
>PLN03005 beta-fructofuranosidase
Probab=100.00 E-value=8.2e-118 Score=943.21 Aligned_cols=390 Identities=59% Similarity=1.077 Sum_probs=377.4
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCcceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhh
Q 008699 159 ATVDCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWE 238 (557)
Q Consensus 159 ~~~~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~ 238 (557)
...++++++||++|++|+|+|+|+|+||+||.|+.+..++||++||+||++||++++|++|++||||+||.++++||+++
T Consensus 79 ~~~~~~~~~a~~~l~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qvF~RDfvpsaLafLl~Ge~eIVrnFl~~~L~Lq~~e 158 (550)
T PLN03005 79 FEPHPMMAEAWEALRRSMVFFRGQPVGTLAAVDNTTDEVLNYDQVFVRDFVPSALAFLMNGEPDIVKHFLLKTLQLQGWE 158 (550)
T ss_pred CCCCcHHHHHHHHHHhheEEECCccceeeeecCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHHHhhhh
Confidence 56689999999999999999999999999999886445699999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHH
Q 008699 239 KTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQT 318 (557)
Q Consensus 239 ~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~ 318 (557)
|+||+|++++|+||+||||.|+|++ ++++++||||+.+||++.+|||+|||||+|++|.++|||.+|++++++|+
T Consensus 159 k~~d~~q~g~G~mPaSfkv~~~p~~-----~~~~l~aDfG~~aIGRv~pVDS~LWWIIllraY~k~tgD~s~~e~pevQr 233 (550)
T PLN03005 159 KRVDRFKLGEGVMPASFKVLHDPIR-----ETDNIVADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTLSETPECQK 233 (550)
T ss_pred hhhhcccCCCCCcCceeeecccccC-----CCccccccccccccccccccchhhHHHHHHHHHHhhccchhhhhChHHHH
Confidence 9999999999999999999998744 35678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcceecCCCcccccccCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 008699 319 GIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFH 398 (557)
Q Consensus 319 ~ik~IL~~~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~ 398 (557)
+|++||++|++++|+++|+++|+||++||||+||++|||+|||||||+||||+.+|+....+..+.++++.+|+.+|++|
T Consensus 234 gi~lil~lcLa~~Fd~~ptLlvpDgs~miDRrMgv~G~pLeiQaLfy~ALR~~~~~L~~~~~~~~~i~~i~~rl~~L~~h 313 (550)
T PLN03005 234 GMKLILSLCLAEGFDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRSALSMLKPDGDGREFIERIVKRLHALSFH 313 (550)
T ss_pred HHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988667789999999999999999
Q ss_pred HHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCCC
Q 008699 399 IREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLA 478 (557)
Q Consensus 399 f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl 478 (557)
++++||+|.+++|+||||++|+|+++|+|+|||+|++||+||+||||++|||++|||+|++||||||++||+|||++||+
T Consensus 314 ~r~yyWld~~~ln~iyr~kteey~~~a~NkfNi~pd~ip~wl~dwlp~~gGY~igNv~pa~~dfRffslGNllAILs~La 393 (550)
T PLN03005 314 MRNYFWLDHQNLNDIYRFKTEEYSHTAVNKFNVMPDSIPEWVFDFMPLRGGYFVGNVGPAHMDFRWFALGNCVSILSSLA 393 (550)
T ss_pred HHHheecchhhhhhhhhccHhhhchhhhhccccCCccchhhhhhhcccCCceeeeecccccCCceehhhhhHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHHHHHhhhc
Q 008699 479 TRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHGSIVGLYV 553 (557)
Q Consensus 479 ~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A~lk~~~v 553 (557)
+++|+++||++|+++|++|++.||||+|+|++++++||++|++||||.||||||||+||+|+|+|++||+|+=+.
T Consensus 394 t~~Qs~aIm~lIe~~w~~Lv~~MPlkIcyPa~e~~eWri~tG~dpKN~PWSYHNGGsWP~Llw~~~aA~iK~gr~ 468 (550)
T PLN03005 394 TPDQSMAIMDLLEHRWEELVGEMPLKICYPCLEGHEWRIVTGCDPKNTRWSYHNGGSWPVLLWQLTAACIKTGRP 468 (550)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCcceeecccCCccceecccCCCCCCCccccCCCcchHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998653
No 4
>PLN02973 beta-fructofuranosidase
Probab=100.00 E-value=6.6e-118 Score=945.17 Aligned_cols=389 Identities=57% Similarity=1.075 Sum_probs=377.9
Q ss_pred cchHHHHHHHHHHHHHhhcccCCCcceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhh
Q 008699 159 ATVDCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWE 238 (557)
Q Consensus 159 ~~~~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~ 238 (557)
...+.++++||++|++|+|+|+|+|+|||||.|++ ++++||++||+||++||++++|++|++||||+||..+++||+++
T Consensus 101 ~~~~~~~~~aw~~l~~s~v~~~g~pvgtvAa~d~~-~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnFl~~TL~lq~~e 179 (571)
T PLN02973 101 FESHPMVGEAWDALRRSMVYFRGQPVGTIAAVDNS-EEKLNYDQVFVRDFVPSALAFLMNGEPDIVKNFLLKTLRLQSWE 179 (571)
T ss_pred CCCCcHHHHHHHHHHhheEEECCeeeeeeeccCCc-cccccCcchhhhccHHHHHHHHHCCCHHHHHHHHHHHHhhhhhH
Confidence 46689999999999999999999999999999986 47899999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHH
Q 008699 239 KTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQT 318 (557)
Q Consensus 239 ~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~ 318 (557)
|+||+|++++|+||+||||.|+|++ +++++.||||+.+||++.+|||+|||||+|++|.++|||.+|++++++|+
T Consensus 180 ktld~~q~g~G~mPaSfkv~~~p~~-----~~e~l~aDfG~~aIGRV~pVDS~LWWIIllraY~k~TgD~s~~e~pevQr 254 (571)
T PLN02973 180 KKIDRFQLGEGVMPASFKVFHDPVR-----NHETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADMPECQK 254 (571)
T ss_pred HHHHhcccCCCCcCceeeecccccC-----ccccccccccccccccccccchhhHHHHHHHHHHHhccchhhhhcHHHHH
Confidence 9999999999999999999998754 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcceecCCCcccccccCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 008699 319 GIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFH 398 (557)
Q Consensus 319 ~ik~IL~~~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~ 398 (557)
+|++|+++|++++|+++|+++|+||++|||++||++|||+|||||||+||||+.+|+....+.++.++++.+|+.+|++|
T Consensus 255 gi~lil~lcL~~~Fd~~ptLlVpDgs~miDrrMgv~G~pLeiQaLfy~ALR~a~~~L~~~~~~~~~i~~i~~rl~~L~~h 334 (571)
T PLN02973 255 GIRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKHDGEGKEMVEQIVKRLHALSYH 334 (571)
T ss_pred HHHHHHHHhcccccCCCceEeccCCccccccccccCCccHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988667789999999999999999
Q ss_pred HHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCCC
Q 008699 399 IREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLA 478 (557)
Q Consensus 399 f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl 478 (557)
++++||+|.+++|+||||+||+|+++|+|+|||+||+||+||+||||++|||++|||+|++||||||++||+|||++||+
T Consensus 335 ir~~ywld~~~ln~iyRykteey~~~a~NkfNi~p~sip~wl~dwlp~~gGY~igNv~Pa~~DfRffslGNllAILs~La 414 (571)
T PLN02973 335 MRSYFWLDLKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWVFDFMPPHGGFFIGNVSPARMDFRWFALGNCIAILSSLA 414 (571)
T ss_pred HHHHHhcCHHHhhhHhhcchhhcchhhhhhccCCccccchhhhhhccCCCceeeeecccccCCcchhhhhhHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHHHHHhhhc
Q 008699 479 TRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHGSIVGLYV 553 (557)
Q Consensus 479 ~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A~lk~~~v 553 (557)
+++|+++||++|+++|+||++.||||+|+|||++++||++|++||||.||||||||+||+|+|+|++||+|+=+.
T Consensus 415 t~~Qs~aIm~lIe~~w~~Lvg~MPlkicyPaie~~EWri~tG~dpKN~PWSYHNGGsWP~Llw~~~aA~iK~gr~ 489 (571)
T PLN02973 415 TPEQSTAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRP 489 (571)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCcceeccCcCCccceehhccCCCCCccceecCCCccHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998653
No 5
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=100.00 E-value=2.6e-55 Score=481.91 Aligned_cols=275 Identities=22% Similarity=0.279 Sum_probs=222.7
Q ss_pred CccCCCCccchhhhHHHHHHH-HccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCccccc
Q 008699 195 SNVLNYDQVFIRDFIPSGIAF-LLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVL 273 (557)
Q Consensus 195 a~~~nY~~vfgRDt~ISllgl-L~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l 273 (557)
|+-+||.. ||||||||+||+ |.+|+++.||++|++++.. ..+|+|||.|
T Consensus 286 AGypwF~~-WGRDt~Isl~Gl~l~tgr~~~A~~iL~~fa~~-----------~~~GliPN~~------------------ 335 (575)
T TIGR01561 286 AGYHWFDD-WGRDSFISLEGLLLIDKQFDEAKEAILKFANL-----------CKRGLIPNNF------------------ 335 (575)
T ss_pred ecCchhcc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-----------hHCCCCCCcc------------------
Confidence 36789986 999999999998 5799999999999888764 2579999987
Q ss_pred CCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHH-hCCCCC--CCcceecCC--Ccccc
Q 008699 274 DPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCL-ADGFDM--FPTLLVTDG--SCMID 348 (557)
Q Consensus 274 ~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~-~~~f~~--~p~lLv~dG--~~wmD 348 (557)
++.|.. .+|++||||||||+++++|+++|||.+++ .++.+.++.|++++. +++|.. .+++++.+| +||||
T Consensus 336 -~~~g~~--p~YntvDAtLWfi~al~~Y~~~tgD~~~l--~~l~p~l~~ii~~y~~G~~~~i~~d~dGLi~~g~~lTWMD 410 (575)
T TIGR01561 336 -IAFGGD--PIYNGVDASLWAIHAIDKTFAYSQDFLFI--RDVVDKVLDIIDNYCAGNDFAIGMDNDLIFHKGAPLTWMD 410 (575)
T ss_pred -CCCCCC--ccCCCchHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHhcCCCcEEEECCCccEeCCCCCCCCC
Confidence 233333 36999999999999999999999999997 578999999999886 455543 356887765 89999
Q ss_pred cc------cCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccc
Q 008699 349 RR------MGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYS 422 (557)
Q Consensus 349 ~r------~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~ 422 (557)
.+ .||.|+|||||||||+||+++++|++..++. ...+.+.++.|+++|++.||++. .+|.
T Consensus 411 a~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~---a~~y~~~A~~lk~~F~~~FW~~~-----------~g~l 476 (575)
T TIGR01561 411 AKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED---AESLEEKAAGVAKNFAEKFINPD-----------GNCL 476 (575)
T ss_pred CCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHHHHHhcCCCC-----------CCee
Confidence 86 4899999999999999999999999875443 33466777778999999999743 2344
Q ss_pred hhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhh--hhcCCCCHH-HHHHHHHHHHHhhhhhhc
Q 008699 423 YDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWS--IVNGLATRD-QSHAILDLMEAKWADLVA 499 (557)
Q Consensus 423 ~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLA--l~~gLl~~e-qa~aVld~v~~~~~eLlt 499 (557)
+|+++.- .....++| -.+|||+ +|| ++++|++++ ++++|+++|++ +|+|
T Consensus 477 ~D~v~~d-~~~~~~~d--------------~s~RPNq----------l~A~sL~~~ll~~~~~~~~vl~~v~~---~Llt 528 (575)
T TIGR01561 477 FDLIHQD-EAGNQVKD--------------KAIRPNQ----------IFAISLPFPIIDDESIAKAILDLIEK---DLLR 528 (575)
T ss_pred EEEEecC-CCCCcccc--------------cccCCCc----------eeHhhCCCCCCCHHHHHHHHHHHHHh---hccC
Confidence 4444320 00011112 1445555 344 478999999 99999999999 9999
Q ss_pred cCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHHHH
Q 008699 500 DMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHGSI 548 (557)
Q Consensus 500 p~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A~l 548 (557)
|+|||||+| .++.|+++|.|++..||.|||||+|||||+|+|+.|++
T Consensus 529 p~GlRTLsp--~d~~Y~p~Y~g~~~~Rd~aYHqGtvWpwl~G~y~~A~l 575 (575)
T TIGR01561 529 PFGLKSLSR--DDPLYKGQYKGDALSRDTAYHNGSLPPWLHGALVKARL 575 (575)
T ss_pred CcccccCCC--CCCCcCCCCCCCccccCCcCcCCCcCccchhhHHhhcC
Confidence 999999999 99999999999999999999999999999999999974
No 6
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=100.00 E-value=7.1e-53 Score=441.55 Aligned_cols=285 Identities=25% Similarity=0.345 Sum_probs=229.4
Q ss_pred CcceEEeecCCCCCccCCCCccchhhhHHHHHHH-HccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecc
Q 008699 182 SPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAF-LLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTV 260 (557)
Q Consensus 182 ~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllgl-L~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~ 260 (557)
++.|+..+ |+.+||.. ||||+|||++|+ |..|+++.++++|.+++..+ ..|+|||.+.
T Consensus 15 ~~~~~~i~-----AG~PWF~~-~GRDt~Isl~gl~l~~~~~~~a~~~L~~~~~~~-----------~~G~ipn~~~---- 73 (370)
T PF06202_consen 15 SEGGPSIA-----AGYPWFST-WGRDTFISLPGLLLSPGRFEEARNILATFAGTQ-----------RHGLIPNELR---- 73 (370)
T ss_pred CCCCceEe-----ccCccccc-cccHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh-----------hcCcccCccc----
Confidence 34555555 68999999 999999999997 68899999999997765532 4699999661
Q ss_pred cCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHHhC-CC--CCC-C
Q 008699 261 PLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLAD-GF--DMF-P 336 (557)
Q Consensus 261 ~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~~~-~f--~~~-p 336 (557)
+ |+.+ +||+||||||||+++++|.++|||.+|+ .++.+.|+.|++++... .| .+. .
T Consensus 74 ---------------~-~~~~--~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l--~~~~~~i~~il~~~~~g~~~~~~~d~~ 133 (370)
T PF06202_consen 74 ---------------D-GEEP--RYNSVDATLWFLIALQEYYRWTGDYSFL--RELYPAIEEILEWYADGTDFGIRVDPE 133 (370)
T ss_pred ---------------C-CCCC--CCCCCccHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHhCCCCccccccC
Confidence 1 3333 5999999999999999999999999998 57999999999998743 32 233 5
Q ss_pred cceecCC-----Cccccccc------CCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q 008699 337 TLLVTDG-----SCMIDRRM------GIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWI 405 (557)
Q Consensus 337 ~lLv~dG-----~~wmD~r~------pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~ 405 (557)
++++..| .+|||... ||.|+|||||||||+||+++++|++...++ ...++.++++.|+++|+++||+
T Consensus 134 ~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~--~a~~~~~~A~~lk~~F~~~FW~ 211 (370)
T PF06202_consen 134 DGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDE--LAARYREWAERLKESFEKRFWD 211 (370)
T ss_pred CCeeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHHHHHHHcC
Confidence 6777643 79999874 799999999999999999999999853333 6677888888899999999997
Q ss_pred cccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCCCCHHHHHH
Q 008699 406 DLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHA 485 (557)
Q Consensus 406 d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~a 485 (557)
+. ++|.+|+++.. +. -..+|||++ +.++++++++++++|++.
T Consensus 212 ~~-----------~g~~~d~ld~~------------------~~-~d~~irpN~--------~~a~~L~~~~l~~~~a~~ 253 (370)
T PF06202_consen 212 ED-----------RGYYADALDGD------------------KE-PDDSIRPNQ--------LIALSLPPGLLDPEQAKK 253 (370)
T ss_pred CC-----------CCEEEEEecCC------------------CC-CCcccccCc--------hhHHhcCCccCCHHHHHH
Confidence 32 23333333321 11 111444443 113557899999999999
Q ss_pred HHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHHHHHhhh
Q 008699 486 ILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHGSIVGLY 552 (557)
Q Consensus 486 Vld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A~lk~~~ 552 (557)
|++++++ +|+||+|||||+| .++.|+++|.|++..|+.|||||+||||++|+|+.|++|+-.
T Consensus 254 vl~~~~~---~L~tp~GlRTLs~--~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~ 315 (370)
T PF06202_consen 254 VLDRVEE---ELLTPWGLRTLSP--SDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGF 315 (370)
T ss_pred HHHHHHH---HcCCCCchhcccC--CCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCc
Confidence 9999987 9999999999999 899999999999999999999999999999999999988754
No 7
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=100.00 E-value=4.7e-47 Score=439.69 Aligned_cols=291 Identities=17% Similarity=0.231 Sum_probs=220.0
Q ss_pred ccCCCC----ccchhhhHHHHHHH-HccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcc
Q 008699 196 NVLNYD----QVFIRDFIPSGIAF-LLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATE 270 (557)
Q Consensus 196 ~~~nY~----~vfgRDt~ISllgl-L~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e 270 (557)
+-+||+ .+||||+|||++|+ |++|+++.||++|++++.. ..+|||||.|
T Consensus 1026 GyPwF~tg~mr~WGRDTfISLrGLlL~tGR~~eAk~ii~~fa~~-----------lr~GLIPNll--------------- 1079 (1464)
T TIGR01531 1026 GLPHFSVGYMRCWGRDTFIALRGMLLTTGRFDEARAIILAFAGT-----------LRHGLIPNLL--------------- 1079 (1464)
T ss_pred cCCccccCcccccchhheeecCcceeccCCHHHHHHHHHHHHHH-----------HHcCCCCCCC---------------
Confidence 667887 89999999999997 6999999999999777643 3679999977
Q ss_pred cccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCC-hhhHh--------------------hhhHHHHHHHHHHHHHh
Q 008699 271 EVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGD-LLVQE--------------------RIDVQTGIKMILKLCLA 329 (557)
Q Consensus 271 ~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD-~sf~~--------------------~~e~~~~ik~IL~~~~~ 329 (557)
++ |..| +|+++||+||||+|+++|+++++| .++++ ...+.+.|+.|+..+..
T Consensus 1080 ----~~-G~~p--rYNt~DA~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeIl~~h~~ 1152 (1464)
T TIGR01531 1080 ----DE-GINP--RYNCRDAAWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEALQKHFQ 1152 (1464)
T ss_pred ----CC-CCcc--cccCccHHHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHc
Confidence 12 4433 699999999999999999999998 44411 12467899999999873
Q ss_pred -CCC------------------C----CC-CcceecCC-----Ccccc-------cc------cCCCCCceeehHHHHHH
Q 008699 330 -DGF------------------D----MF-PTLLVTDG-----SCMID-------RR------MGIHGHPLEIQALFYSA 367 (557)
Q Consensus 330 -~~f------------------~----~~-p~lLv~dG-----~~wmD-------~r------~pR~G~PVEIQALwYnA 367 (557)
..| + +. .+||+-.| +|||| ++ .||.|+|||||||||+|
T Consensus 1153 G~~fRE~NAGp~iD~~M~deGfn~~I~vD~~~GLI~gGn~~ncgTWMDkmg~SekA~~~G~p~TPRdG~aVEInaLwynA 1232 (1464)
T TIGR01531 1153 GIQFRERNAGPQIDRVMTDEGFNVTIGVDWETGFIYGGNRFNCGTWMDKMGESEKAGNKGIPATPRDGAAVEIVGLLKSA 1232 (1464)
T ss_pred CCccccccccccchhhhccccccceEEEcCCCCcEecCCCCCCCCCcCCCCcccccccCCcccCCCCCCceeHHHHHHHH
Confidence 233 1 12 46666543 69999 33 48999999999999999
Q ss_pred HHHHHHhhCCC----CCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchhh----hhccCCCCCCCCcc
Q 008699 368 LLCAREMLAPE----DGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDA----VNKFNIYPDQIPPW 439 (557)
Q Consensus 368 Lr~a~~L~~~~----~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~a----vn~fni~pd~ipd~ 439 (557)
|+++.+|.+.. .+.......+.+.++.++..|++.||++. ..+|.+|. +|.-.|+.|..+.
T Consensus 1233 L~~~~~l~~~~~~~~~g~~~~~~~~~~wa~~ik~~Fe~~F~~~~----------~~~~lyDv~~~~vnrrgIykD~~~s- 1301 (1464)
T TIGR01531 1233 LRFLIELKEKGVFKRSGVETQKWSYIEWNQKIQDNFEKRFFVDE----------SQDADYDVAKLGVNRRGIYKDSYGS- 1301 (1464)
T ss_pred HHHHHHHHHhcCcCcCCcccchhhHHHHHHHHHHHHhhhcCCCc----------ccCccccccchhhccccccccccCC-
Confidence 99999999763 12221222345556668999999999732 12333333 3444555543221
Q ss_pred cccccCCCCceeeccccCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeee
Q 008699 440 LVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIIT 519 (557)
Q Consensus 440 L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t 519 (557)
..+|-.-.+||++ .++ +++++.|+++++++++++++ + +|+||+|||||+| .|+.|+++|
T Consensus 1302 -------~~~~~D~qlRPN~----~iA----~sla~~l~~~~~a~~~L~~v-~---~LltP~GlRTLdP--~D~~Y~g~Y 1360 (1464)
T TIGR01531 1302 -------TKPWTDYQLRPNF----AIA----MTVAPELFVPEKAWKALTIA-E---VLLGPLGMKTLDP--SDWNYRGYY 1360 (1464)
T ss_pred -------CCCCCCcccCCCc----eEE----EeCCcccCCHHHHHHHHHHH-H---HhccCCccccCCC--CCcCCCCcc
Confidence 0111112455554 121 34578999999999999999 6 9999999999999 999999999
Q ss_pred CCCCCCCCC------ccccCCcchhhhHHHHHHHHHhh
Q 008699 520 GSDPKNTPW------SYHNAGSWPTLLWQVSHGSIVGL 551 (557)
Q Consensus 520 ~gd~knrp~------SYHNGgvWPwLLg~y~~A~lk~~ 551 (557)
.|++.+||. +||||++||||+|+|+.|++|+-
T Consensus 1361 ~g~~dsrD~~t~kg~aYHqG~eW~WllG~fl~A~lk~~ 1398 (1464)
T TIGR01531 1361 NNGEDSDDFATAKGRNYHQGPEWVWPIGYFLRARLHFH 1398 (1464)
T ss_pred CCchhhccccccccccccCCCcCccchhHHHHHHHHhc
Confidence 999999998 99999999999999999999863
No 8
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-39 Score=357.74 Aligned_cols=297 Identities=21% Similarity=0.262 Sum_probs=223.1
Q ss_pred ccchHHHHHHHHHHHHHhhcccCCCcceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhh
Q 008699 158 KATVDCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSW 237 (557)
Q Consensus 158 ~~~~~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~ 237 (557)
....+++..+|...|-.+.+....+-.+.+|..+ .++||+ +||||++||++|+|+.|++|+||+.|++++++
T Consensus 244 ~~~~~~~~~~a~~dl~~~~~~~~~~g~~~~Ag~P----~~~WF~-~fGRD~lIS~lgll~~g~~elArg~L~~~a~~--- 315 (641)
T COG3408 244 GEYLNEAFRRAKADLLELTTSTGETGPGLYAGLP----IAHWFS-PFGRDTLISALGLLLVGRFELARGTLNTLARY--- 315 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccCcceEecCC----cchhcc-ccchHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Confidence 3456788888888777765533322355555532 125999 99999999999998669999999999988875
Q ss_pred hhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHH
Q 008699 238 EKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQ 317 (557)
Q Consensus 238 ~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~ 317 (557)
...|.||+.| . .+.+.. .+|++||+++|||+++.+|.++|+|..|+ .++.
T Consensus 316 --------~~~GkIPhe~--~----------------~~~~~~--~~Y~tvD~t~~~i~~~~~y~~~t~d~~~i--~e~~ 365 (641)
T COG3408 316 --------SEPGKIPHEI--L----------------LSIPGE--PYYNTVDATPLFIYLLGAYLKYTGDTEFI--RELW 365 (641)
T ss_pred --------ccCCCCcchh--h----------------hcCCCc--ceeccCCCcHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 2668888854 1 011111 26999999999999999999999999997 4899
Q ss_pred HHHHHHHHHHHhC-C--CCCCCcceecC--CCcccccc------cCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHH
Q 008699 318 TGIKMILKLCLAD-G--FDMFPTLLVTD--GSCMIDRR------MGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIR 386 (557)
Q Consensus 318 ~~ik~IL~~~~~~-~--f~~~p~lLv~d--G~~wmD~r------~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~ 386 (557)
+.+..+++|+... + |++...++..+ ..+|||.. +||.|.|||||||||+|++.+..++..+. ..+..+
T Consensus 366 ~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~-~~~~~~ 444 (641)
T COG3408 366 PSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLG-DEEDAA 444 (641)
T ss_pred HHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhc-ccccHH
Confidence 9999999999853 2 45777777776 48999996 37899999999999999999999998755 556667
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCcccccccc
Q 008699 387 ALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFS 466 (557)
Q Consensus 387 ~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~fa 466 (557)
++.+++.+++++|++.||++ ..+.++ +.+. ++. .++|+. ..
T Consensus 445 ~~~~~a~~l~~~F~~~fw~~-~~f~dl-----------~~~~--------~~~--------------~~r~~~-----~~ 485 (641)
T COG3408 445 RLEKIARRLKESFEAKFWNP-TGFYDL-----------ALDD--------KDV--------------PIRPNF-----SN 485 (641)
T ss_pred HHHHHHHHHHHHHHHHhhCc-cchHhh-----------hccC--------CCc--------------ccCccc-----ee
Confidence 77778888999999999975 333322 1110 000 122332 21
Q ss_pred ccchhhhhcCCCCHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHH
Q 008699 467 LGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHG 546 (557)
Q Consensus 467 lGNlLAl~~gLl~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A 546 (557)
-+.+ +..++.+++.+ .|++++++ +|+||+|||||+| . ||.++|+.||||+||||+.|.|+.+
T Consensus 486 a~~l--~~~gi~~~~~~-~~~~l~e~---~lltp~GlRTLS~--~----------dp~Y~p~yYH~GtVWP~~~gifv~g 547 (641)
T COG3408 486 AIHL--LYTGIVDPERA-VIIRLAEE---DLLTPWGLRTLSP--D----------DPRYNPMYYHNGTVWPHDTGIFVLG 547 (641)
T ss_pred cccc--cccccCchHHH-HHHHHHHH---hccCCccccccCC--C----------CCCcCCCcccCCCcccchHHHHHHH
Confidence 2222 24566666655 88888888 9999999999999 5 6666677799999999999999999
Q ss_pred HHHh
Q 008699 547 SIVG 550 (557)
Q Consensus 547 ~lk~ 550 (557)
+.|.
T Consensus 548 ~~r~ 551 (641)
T COG3408 548 LRRY 551 (641)
T ss_pred HHHc
Confidence 9753
No 9
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5e-24 Score=237.19 Aligned_cols=287 Identities=20% Similarity=0.239 Sum_probs=201.7
Q ss_pred CCCCccchhhhHHHHHHH-HccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCC
Q 008699 198 LNYDQVFIRDFIPSGIAF-LLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPD 276 (557)
Q Consensus 198 ~nY~~vfgRDt~ISllgl-L~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad 276 (557)
.+|-++||||+|||++|+ |.+||+..||+++..++. . .+.|+|||-. |
T Consensus 1077 vg~mRcWGRDtFIaLrG~ll~TGRy~EAr~iIlaFa~---t--------lrHGLIPNLL--------------------d 1125 (1521)
T KOG3625|consen 1077 VGIMRCWGRDTFIALRGILLITGRYVEARNIILAFAG---T--------LRHGLIPNLL--------------------D 1125 (1521)
T ss_pred hhhhhhcccceeeecccceEeecchHHHHHHHHHHHH---H--------hhccccchhh--------------------h
Confidence 488899999999999998 599999999999976653 2 3679999944 2
Q ss_pred CCCCccCccCCCCcHHHHHHHHHHHHHHhC----------------ChhhHh-----hhhHHHHHHHHHHHHH-------
Q 008699 277 FGEAAIGRVAPVDSGLWWIILLRAYGKCSG----------------DLLVQE-----RIDVQTGIKMILKLCL------- 328 (557)
Q Consensus 277 ~Ge~aig~y~sVDAtLWfIial~~Y~k~TG----------------D~sf~~-----~~e~~~~ik~IL~~~~------- 328 (557)
.|-- .||++=||..||+.++++|++... |.+.+. ..-+...|.++|.-.-
T Consensus 1126 ~G~~--~RyNcRDA~W~wl~~Iq~Yve~vPnG~~ILkd~VsRiyP~DDs~v~~pgaf~q~L~evi~Eal~kH~qGiqfRE 1203 (1521)
T KOG3625|consen 1126 EGIY--ARYNCRDAVWWWLQCIQDYVEMVPNGLDILKDPVSRIYPTDDSAVLPPGAFDQPLFEVIQEALQKHFQGIQFRE 1203 (1521)
T ss_pred cccc--ccccchHHHHHHHHHHHHHHHhCCChhhhhhCchheeCCCCCcccCCCchhhHHHHHHHHHHHHHHhccccchh
Confidence 2222 389999999999999999988642 222111 0113344444444332
Q ss_pred ------------hCCCCC-----CCcceecCC-----Cccccccc--------------CCCCCceeehHHHHHHHHHHH
Q 008699 329 ------------ADGFDM-----FPTLLVTDG-----SCMIDRRM--------------GIHGHPLEIQALFYSALLCAR 372 (557)
Q Consensus 329 ------------~~~f~~-----~p~lLv~dG-----~~wmD~r~--------------pR~G~PVEIQALwYnALr~a~ 372 (557)
.++|+. ..||+|..| .||||. | ||.|..||||+|-|.|||++.
T Consensus 1204 rnAGpqiD~~M~DeGFnv~~gV~~~TGfv~GGn~~NCGTWMDK-MGeSerAgnkG~PaTPRDGsAVEi~GL~~salrfl~ 1282 (1521)
T KOG3625|consen 1204 RNAGPQIDRNMKDEGFNVTAGVDEETGFVYGGNRFNCGTWMDK-MGESERAGNKGIPATPRDGSAVEIVGLSKSALRFLL 1282 (1521)
T ss_pred ccCCcccchhhhccCcceeeccccccceeecCCccccchhhhh-cccchhccCCCCCCCCCCCceeehhhhHHHHHHHHH
Confidence 134543 257787765 799998 6 688999999999999999999
Q ss_pred HhhCCCC-----------C--CHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcc
Q 008699 373 EMLAPED-----------G--SADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPW 439 (557)
Q Consensus 373 ~L~~~~~-----------~--~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~ 439 (557)
+|.+... + .+-.+... ...+++.|.++|.++..--. ..+-....+|+..|+.|+.-.
T Consensus 1283 elkek~ifpy~~Ve~k~~g~~~k~s~~eW---~qkiqdNFeK~ffV~ed~s~------~~~~~~~~vnkr~IykDsyga- 1352 (1521)
T KOG3625|consen 1283 ELKEKNIFPYHGVEVKRHGKAIKWSYDEW---NQKIQDNFEKLFFVSEDPSD------LNEKHPNLVNKRGIYKDSYGA- 1352 (1521)
T ss_pred HHHhcCCccccceEEecccccceecHHHH---HHHHHhhhhheecccCCcch------hhhhcccccchhheecccccC-
Confidence 9997610 1 11223334 44478999999998442211 112233467888888876422
Q ss_pred cccccCCCCceeeccccCCccccccccccch---hhhhcCCCCHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCce
Q 008699 440 LVEWMPNKGGYLIGNLQPAHMDFRFFSLGNI---WSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQ 516 (557)
Q Consensus 440 L~d~~~~~ggYl~gnv~P~~~D~R~falGNl---LAl~~gLl~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr 516 (557)
-.| .-|+ -.++|. +++.-.|.+++.|-+.+++.++ -|++|.|||||.| +|-.|+
T Consensus 1353 ---------------t~~-~tDy--QLR~NF~IamtVAPeL~~pe~A~kAle~Aek---vLlGPlGMkTlDP--~D~nYr 1409 (1521)
T KOG3625|consen 1353 ---------------TSP-WTDY--QLRPNFTIAMTVAPELFTPEKAWKALEIAEK---VLLGPLGMKTLDP--DDWNYR 1409 (1521)
T ss_pred ---------------CCC-ccce--eccCCceeEEEechhhcChHHHHHHHHHHHH---HhcCcccccccCh--hhcccc
Confidence 011 1232 123442 4445677999999999999998 9999999999999 888899
Q ss_pred eeeCCCCCC------CCCccccCCcchhhhHHHHHHHHHhh
Q 008699 517 IITGSDPKN------TPWSYHNAGSWPTLLWQVSHGSIVGL 551 (557)
Q Consensus 517 ~~t~gd~kn------rp~SYHNGgvWPwLLg~y~~A~lk~~ 551 (557)
++|.-+-.+ .-+-||||.-|-|++|.|..|.+..-
T Consensus 1410 ~yYdN~~Ds~d~~takG~NYHQGPEWlw~~GyfLrArl~f~ 1450 (1521)
T KOG3625|consen 1410 GYYDNALDSDDYNTAKGFNYHQGPEWLWPIGYFLRARLYFS 1450 (1521)
T ss_pred cccCCCccccchhhhccccccCCCceeehhHHHHHHHHHHH
Confidence 999643333 34679999999999999999987643
No 10
>PRK10137 alpha-glucosidase; Provisional
Probab=99.86 E-value=6.4e-20 Score=207.60 Aligned_cols=315 Identities=13% Similarity=0.065 Sum_probs=216.3
Q ss_pred chHHHHHHHHHHHHHhhcccCCCc-------ceEEeecCCCCCccCCCCc--cchhhhHHHHHHHHccCCHHHHHHHHHH
Q 008699 160 TVDCLEDEAWNLLRDSMVYYCGSP-------IGTIAANDPTSSNVLNYDQ--VFIRDFIPSGIAFLLKGEYDIVRNFILH 230 (557)
Q Consensus 160 ~~~~~~~~A~~lLr~~~~~~~~~p-------~GtiAa~d~~~a~~~nY~~--vfgRDt~ISllglL~~G~peiar~~L~~ 230 (557)
...++..+|.+.|+. |-+- .||+.+ +.++||.. .|+||+.+.++|++.. +||+|++.|++
T Consensus 305 ~~~~l~~kA~~~L~~-----Nwr~~~g~~~~~~t~Ps-----~gl~Wf~~~~~W~WDS~~~A~~la~f-dpelA~~~lr~ 373 (786)
T PRK10137 305 EQTRVAVKAMETLNG-----NWRSPAGAVKFNTVTPS-----VTARWFSGNQTWPWDTWKQAYAMAHF-NPDVAKENIRA 373 (786)
T ss_pred HHHHHHHHHHHHHHH-----hccccccccccCceEeC-----CCCCCCCCCCccchHHHHHHHHHhhc-CHHHHHHHHHH
Confidence 456788899999988 6543 346666 67899999 9999999999998876 99999999999
Q ss_pred HHhhhhhhhhcCCCCC-CCCCCCCcceeecccCCCCCCCcccccCCCC-CCCccCccCCCC-cHHHHHHHHHHHHHHhCC
Q 008699 231 TLQLQSWEKTMDCHSP-GQGLMPASFKVRTVPLDGDDSATEEVLDPDF-GEAAIGRVAPVD-SGLWWIILLRAYGKCSGD 307 (557)
Q Consensus 231 ~~~Lqs~~~~~d~~~~-~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~-Ge~aig~y~sVD-AtLWfIial~~Y~k~TGD 307 (557)
+...|... .|++++ ..|+||- -|.|.+ -|+. |+.+ ..++.. -.+.+.|++++++++|+|
T Consensus 374 Lf~~Q~~~--~d~~r~~~~G~Iph--~vf~~~------------~p~R~g~~~--~~ne~~tqPPL~a~av~~vy~~t~d 435 (786)
T PRK10137 374 VFSWQIQP--DDSVRPQDVGFVPD--LIAYNL------------SPERGGDGG--NWNERNTKPSLAAWSVMEVYNVTQD 435 (786)
T ss_pred HHHhhccc--cCCCCcCCCCeeeE--EeccCC------------Ccccccccc--cccCCCcCcCHHHHHHHHHHHHhCC
Confidence 99998754 488887 5678885 233432 1221 2211 112111 137799999999999999
Q ss_pred hhhHhhhhHHHHHHHHHHHHHhCCCCCCCcceec----------------------------------------------
Q 008699 308 LLVQERIDVQTGIKMILKLCLADGFDMFPTLLVT---------------------------------------------- 341 (557)
Q Consensus 308 ~sf~~~~e~~~~ik~IL~~~~~~~f~~~p~lLv~---------------------------------------------- 341 (557)
.+|+ .++.|.+..-.+|....+ |...+|++.
T Consensus 436 ~~fl--~~lyPkL~a~h~Ww~~~R-D~dg~Gl~eY~~~~~~~h~~~~g~~~~~i~~~~~~~~~~G~~n~~~~~~~~~~~~ 512 (786)
T PRK10137 436 KAWL--AEMYPKLVAYHDWWLRNR-DHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDS 512 (786)
T ss_pred HHHH--HHHHHHHHHHHHHHHhcC-CCCCCceeEeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 9997 579999999999987421 111122211
Q ss_pred -----C-CCcc---cc-------------------------------------cccCCC-CC--ceeehHHHHHHHHHHH
Q 008699 342 -----D-GSCM---ID-------------------------------------RRMGIH-GH--PLEIQALFYSALLCAR 372 (557)
Q Consensus 342 -----d-G~~w---mD-------------------------------------~r~pR~-G~--PVEIQALwYnALr~a~ 372 (557)
. .-.| || .++... -. +|++|++.|.+.+.++
T Consensus 513 ~~~~~~~~~~WESGmDNap~f~~i~~~~~~~y~r~~y~r~~~~V~~~~~~~~dg~l~~~p~~~e~VDLNsyLy~a~~~LA 592 (786)
T PRK10137 513 LEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLA 592 (786)
T ss_pred ccccccccCCCCCCCCCccccccccccccchhhhccccccceeeeehhcccCCCCccCCCCcCCCHHHHHHHHHHHHHHH
Confidence 0 0112 23 111100 02 5899999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceee
Q 008699 373 EMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLI 452 (557)
Q Consensus 373 ~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~ 452 (557)
+|++. .++.+.++++.++++.++..|++.||.+..+++.- |..+ ++ + . ..|
T Consensus 593 ~LAe~-LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~D--ydL~-------~~----~--~---------~~~---- 643 (786)
T PRK10137 593 EMATI-LGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYD--VRIE-------DK----P--L---------ANG---- 643 (786)
T ss_pred HHHHH-hCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEE--EecC-------cc----c--c---------ccc----
Confidence 99998 45667788899999999999999999865543311 1110 00 0 0 000
Q ss_pred ccccCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCcccc
Q 008699 453 GNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHN 532 (557)
Q Consensus 453 gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHN 532 (557)
+.-+|. +.+.+..++.+.++.++++++|+++|++.+..+ ..+.+++|++|++| . +|.+.|..||+
T Consensus 644 ~~g~~i--~~~~~~~agf~PLwaGia~~eqA~~VV~~L~~p-~~F~t~~GipTlS~--s----------~p~ydp~~YWR 708 (786)
T PRK10137 644 CAGKPI--VERGKGPEGWSPLFNGAATQANADAVVKVMLDP-KEFNTFVPLGTAAL--T----------NPAFGADIYWR 708 (786)
T ss_pred ccCcce--eeeccCccchhhccCCCCCHHHHHHHHHHhcCh-hhcCCCCCccCcCC--C----------ccccCCCCCCC
Confidence 000111 112334455567889999999999999999854 26678889999999 4 45556779999
Q ss_pred CCcchhhhHHHHHHHHHh
Q 008699 533 AGSWPTLLWQVSHGSIVG 550 (557)
Q Consensus 533 GgvWPwLLg~y~~A~lk~ 550 (557)
|.|||-+.|+.+.+..+.
T Consensus 709 GpVWpp~N~Li~~GL~rY 726 (786)
T PRK10137 709 GRVWVDQFYFGLKGMERY 726 (786)
T ss_pred CCcCHhHHHHHHHHHHHc
Confidence 999999999988887553
No 11
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=99.67 E-value=1.5e-14 Score=161.47 Aligned_cols=203 Identities=16% Similarity=0.116 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHhhcccCCCcce-EEeecCCCCCccC--CCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhh
Q 008699 162 DCLEDEAWNLLRDSMVYYCGSPIG-TIAANDPTSSNVL--NYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWE 238 (557)
Q Consensus 162 ~~~~~~A~~lLr~~~~~~~~~p~G-tiAa~d~~~a~~~--nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~ 238 (557)
..+|+++.-.|+.+ ...+.| .|||...+..... .|.-+|.||+..++.+++..|.++.++.++..++..|.
T Consensus 255 ~~~~~~Sll~Lk~~----~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~-- 328 (616)
T TIGR01577 255 YSLYRRSLAVLRLL----TDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQS-- 328 (616)
T ss_pred HHHHHHHHHHHHhc----cCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhC--
Confidence 36777776666651 112224 5666442211122 39999999999999999999999999999999988765
Q ss_pred hhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHH
Q 008699 239 KTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQT 318 (557)
Q Consensus 239 ~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~ 318 (557)
.+|..|..+. + + |+ ..| ...-...|.+-..++++++|.+.|+|.+|+ .++.+
T Consensus 329 --------~~G~~~~~~~----~-d-----G~--~~~------~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~--~~~~~ 380 (616)
T TIGR01577 329 --------RDGSWQQRYY----L-N-----GR--LAP------LQWGLQIDETGSILWAMDQHYRLTNDRAFL--EEIWE 380 (616)
T ss_pred --------cCCCcceEEe----c-C-----CC--CCC------CCCCccccchhHHHHHHHHHHHHHCCHHHH--HHHHH
Confidence 4565554331 1 1 11 111 111235666666788999999999999997 57899
Q ss_pred HHHHHHHHHHhCCCCCCCcceecCCCcccccccCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 008699 319 GIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFH 398 (557)
Q Consensus 319 ~ik~IL~~~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~ 398 (557)
.++.+++++.... .+.+-.++-..|-. |.|+.++.+|++|.||+++++|++.. ++.+.++++.+.++.+++.
T Consensus 381 ~v~~a~~fl~~~~---~~~l~~~~~~lWEe----r~G~~~~t~a~~~aAL~~aa~lA~~l-Gd~~~a~~~~~~Ad~ik~~ 452 (616)
T TIGR01577 381 SVQKAAQYLILFI---DPETPLPCRDLWEE----REGVFTYTASAVYGGLDAAAAVADKL-GEKRLAQNWKKAAEFIKRA 452 (616)
T ss_pred HHHHHHHHHHHhc---cCCCCCCCCcccee----cCCccCccHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHH
Confidence 9999999997631 12233344335764 56889999999999999999999984 4556777888888999999
Q ss_pred HHhhcccc
Q 008699 399 IREYYWID 406 (557)
Q Consensus 399 f~~~FW~d 406 (557)
|+++||.+
T Consensus 453 i~~~~w~~ 460 (616)
T TIGR01577 453 VEERFWLP 460 (616)
T ss_pred HHHhccCC
Confidence 99999964
No 12
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=99.26 E-value=1.2e-10 Score=126.64 Aligned_cols=196 Identities=20% Similarity=0.178 Sum_probs=135.5
Q ss_pred chHHHHHHHHHHHHHhhcccCCCcceEEeecCCCCCccCCC-C-ccchhhhHHHHHHHH-ccCCHHHHHHHHHHHHhhhh
Q 008699 160 TVDCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTSSNVLNY-D-QVFIRDFIPSGIAFL-LKGEYDIVRNFILHTLQLQS 236 (557)
Q Consensus 160 ~~~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~a~~~nY-~-~vfgRDt~ISllglL-~~G~peiar~~L~~~~~Lqs 236 (557)
.+|++++.+..-++. |-+ ++. .+-+.+ . ..|+=|+.++++..+ ..|+.+++|+.|..+...|.
T Consensus 118 ~ln~i~~~~~~T~~~-----n~~--~~~-------~Dcp~RdER~~w~GD~~~~~~~~~~~~~~~~l~~~~l~~~~~~q~ 183 (509)
T PF05592_consen 118 LLNRIWEMSRRTLRS-----NMQ--DVF-------TDCPKRDERLGWTGDARVSALTAYYSFGDAALYRKWLRDFADSQR 183 (509)
T ss_dssp HHHHHHHHHHHHHHH-----TBS--SSB--------SBTTT-T---BHHHHHHHHHHHHCCT--HHHHHHHHHHHHGGTT
T ss_pred HHHHHHHHHHHHHHh-----hCC--CCc-------eECcchhhhcCCcchHHHHHHHHHHhCCcHHHHHHHHHHHHHhhc
Confidence 788999999998888 432 111 133555 3 479999999999975 88999999999988776544
Q ss_pred hhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhH
Q 008699 237 WEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDV 316 (557)
Q Consensus 237 ~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~ 316 (557)
.+|.+|... | ..+ ....+..|=+++||+.++.|+++|||.+++ .++
T Consensus 184 ----------~~G~~p~~~-----P--------------~~~---~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l--~~~ 229 (509)
T PF05592_consen 184 ----------PDGLLPSVA-----P--------------SYG---GGGFGIPDWSLAWIIIPWDYYLYTGDREFL--EEY 229 (509)
T ss_dssp ----------TSTT-SSBS-----S--------------------SSGGGBHHHHHHHHHHHHHHHHHHT-HHHH--HHH
T ss_pred ----------ccCCceEEe-----c--------------ccC---CCCCCCccHHHHHHHHHHHHHHHhCCHHHH--HHH
Confidence 679999744 2 221 012345666899999999999999999998 579
Q ss_pred HHHHHHHHHHHHhCCCCCCCcceecC-CCccc----ccccCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008699 317 QTGIKMILKLCLADGFDMFPTLLVTD-GSCMI----DRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNR 391 (557)
Q Consensus 317 ~~~ik~IL~~~~~~~f~~~p~lLv~d-G~~wm----D~r~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~r 391 (557)
.+.++..|+++....-+ ....+... -.+|. +. ....+..+-.|+++|.||+.+++|++. .++.+.++.+.++
T Consensus 230 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~DW~~~~~~~-~~~~~~~~~~~~~~~~~l~~~a~lA~~-lg~~~~a~~y~~~ 306 (509)
T PF05592_consen 230 YPAMKRYLDYLERRVDD-GLDGLPGWGFGDWLAPGNDG-DGPTPGATITNALYYYALRAAAELAEA-LGKDEDAAEYRAR 306 (509)
T ss_dssp HHHHHHHHHHHHTTB-T-SSB-CCSB--S-SS----TT----SCCEEHHHHHHHHHHHHHHHHHHH-CT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cccCCCCCceeecCCccCcc-cccchHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 99999999999864111 00111111 14565 22 223344455899999999999999998 4566678999999
Q ss_pred HHHHHHHHHhhcccc
Q 008699 392 LVALSFHIREYYWID 406 (557)
Q Consensus 392 a~~L~~~f~~~FW~d 406 (557)
+.+|+..|++.||.+
T Consensus 307 a~~lk~a~~~~~~d~ 321 (509)
T PF05592_consen 307 AERLKAAINRHFWDP 321 (509)
T ss_dssp HHHHHHHHHHHCEET
T ss_pred HHHHHHHHHHhccCc
Confidence 999999999999953
No 13
>PRK13271 treA trehalase; Provisional
Probab=99.15 E-value=3.8e-09 Score=117.62 Aligned_cols=286 Identities=12% Similarity=0.157 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHhhcccCCCcceEEeecCCCC-CccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhh
Q 008699 162 DCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTS-SNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKT 240 (557)
Q Consensus 162 ~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~-a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~ 240 (557)
.+-++.-|..|-+....-. +.+++.-..+.- -..-.|...+.=|+.-.++|+|.+|..++||+.+..++-+-.
T Consensus 120 ~~~i~~lW~~L~R~~~~~~--~~~sli~lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~~~i~---- 193 (569)
T PRK13271 120 REHIDGLWPVLTRSTENTE--KWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEID---- 193 (569)
T ss_pred HHHHHHHHHHhcCcCCCCC--CCCceecCCCCeEecCCCcchhhhhHHHHHHHhhHhcCCHHHHHHHHHHHHHHHH----
Confidence 3445555666655332211 123443332221 122469999999999999999999999999999988776532
Q ss_pred cCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHH
Q 008699 241 MDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGI 320 (557)
Q Consensus 241 ~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~i 320 (557)
.-|.|||.=.+ ||-+===.+.|.--+..|++.|+|. +++ +..+.+
T Consensus 194 ------~yG~IPNg~R~--------------------------YYl~RSQPP~l~~Mv~~~~~~~~~~-~l~--~~lp~l 238 (569)
T PRK13271 194 ------TWGHIPNGNRS--------------------------YYLSRSQPPFFALMVELLAQHEGDA-ALK--QYLPQM 238 (569)
T ss_pred ------HhCcCcCCchh--------------------------hcccCCCChhHHHHHHHHHhcCcHH-HHH--HHHHHH
Confidence 55999983311 1211122334777788899888883 542 233333
Q ss_pred HHHHH-HHHhCC-----CCCCCcceec----------------------------------------------C-C----
Q 008699 321 KMILK-LCLADG-----FDMFPTLLVT----------------------------------------------D-G---- 343 (557)
Q Consensus 321 k~IL~-~~~~~~-----f~~~p~lLv~----------------------------------------------d-G---- 343 (557)
++=.+ |+.... -....+..+. + |
T Consensus 239 ~kEy~~Wm~~~~~~~~~~~~~r~v~~~~~~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~y~~l~a~aESGwDfS 318 (569)
T PRK13271 239 QKEYAYWMEGVENLQPGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFS 318 (569)
T ss_pred HHHHHHHhCCCcccCccccccceEEeCCCCcccccccCCCCCCCCcHHHHHHHHhhCCcchHHHHHHHHHHHhhcCCcch
Confidence 33222 222100 0000000000 0 1
Q ss_pred Ccccccc--c----CCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhcc
Q 008699 344 SCMIDRR--M----GIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYK 417 (557)
Q Consensus 344 ~~wmD~r--~----pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~ 417 (557)
+-|+... + -+.=.||++|||||++.+.++++++. .++.+.+.++.++++.++..|++.||.+..+.. |
T Consensus 319 sRw~~~~~~l~~i~t~~IiPVDLNALLy~ae~~LA~la~~-lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f--~--- 392 (569)
T PRK13271 319 SRWMDNPQQLNTIRTTSIVPVDLNALMFKMEKILARASKA-AGDNAMANQYETLANARQKAIEKYLWNDKEGWY--A--- 392 (569)
T ss_pred hhhccCCccccccccccccCchHHHHHHHHHHHHHHHHHH-hCChhhHHHHHHHHHHHHHHHHHhcccCCCCEE--E---
Confidence 2244221 0 01227899999999999999999987 455567778888999999999999996543211 1
Q ss_pred ccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhhh
Q 008699 418 TEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADL 497 (557)
Q Consensus 418 ~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~eL 497 (557)
||.-.. +..+ + .+...|++.++.++++++|+++|++.+.+ +|
T Consensus 393 ------------------------DYDl~~-----~~~r----~--~~saa~f~PLwag~a~~~qA~~Vv~~l~~---~L 434 (569)
T PRK13271 393 ------------------------DYDLKS-----HKVR----N--QLTAAALFPLYVNAAAKDRANKVAAATKT---HL 434 (569)
T ss_pred ------------------------EEECCC-----CCEe----e--chhHHHHHhhhcCCCCHHHHHHHHHHHHH---hc
Confidence 111000 0111 1 23445566778899999999999999987 89
Q ss_pred hccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCc-chhhhHHHHHHHHH
Q 008699 498 VADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGS-WPTLLWQVSHGSIV 549 (557)
Q Consensus 498 ltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgv-WPwLLg~y~~A~lk 549 (557)
++|.||++..| +. ..|=.|.+ ||=+-|+.+.+..+
T Consensus 435 l~pgGLpTt~~--~S---------------gqQWD~PngWaPlq~iiieGL~~ 470 (569)
T PRK13271 435 LQPGGLNTTSV--KS---------------GQQWDAPNGWAPLQWVATEGLQN 470 (569)
T ss_pred CCCCCccCCCC--CC---------------CCCCcCcccCHhHHHHHHHHHHH
Confidence 99999999988 21 24566766 99999999988765
No 14
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=99.08 E-value=2e-10 Score=121.62 Aligned_cols=116 Identities=18% Similarity=0.139 Sum_probs=70.1
Q ss_pred cCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHHhCCCCCCCcceecC-CC--cccccccCCCCCceeeh
Q 008699 285 VAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTD-GS--CMIDRRMGIHGHPLEIQ 361 (557)
Q Consensus 285 y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~~~~f~~~p~lLv~d-G~--~wmD~r~pR~G~PVEIQ 361 (557)
...+|..++||+.+++|++.|||.+|+ .++.+.++.+++++.. ++...+|++.. |. .+.|. ...+|.-.+++
T Consensus 95 ~~~~D~~~~fVL~vyr~~~~TGD~~fL--~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~-~~~~G~say~~ 169 (365)
T PF04685_consen 95 YAWKDLNPKFVLQVYRDYKWTGDRDFL--KEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDD-WSMYGPSAYCG 169 (365)
T ss_dssp ------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT--EEEEEEHHHH
T ss_pred cccccccccccccccccccccccchhh--hhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCcccccc-CCeeCCCHHHH
Confidence 568999999999999999999999997 5799999999999997 56767777543 43 56677 44688889999
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Q 008699 362 ALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWID 406 (557)
Q Consensus 362 ALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d 406 (557)
+||+.||+++++|++. .++.+.+++..+.++..+..|++.+|..
T Consensus 170 ~L~laAL~A~~emA~~-lgd~~~a~~y~~~~~~~~~~~~~~LWnG 213 (365)
T PF04685_consen 170 GLWLAALRAAAEMAKI-LGDPELAAKYRELAEKAKKAFNKKLWNG 213 (365)
T ss_dssp HHHHHHHHHHHHHHHH-HT-HHHHHHHHHHHHHHHHHHHHHSEET
T ss_pred HHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 9999999999999997 5677788889999999999999999953
No 15
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=2.9e-08 Score=114.07 Aligned_cols=263 Identities=20% Similarity=0.280 Sum_probs=186.4
Q ss_pred hhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCcc
Q 008699 206 RDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRV 285 (557)
Q Consensus 206 RDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y 285 (557)
||..==.+.+++. +|+.+|..|+.++..|= .+|-.|--| +|+.+...--+-
T Consensus 615 RD~~Qd~l~f~~~-~p~~aR~qIl~~as~Qf----------~eGd~~hWf------------------~p~t~ag~qir~ 665 (1056)
T COG3459 615 RDQLQDTLEFLLA-RPALARKQILDAASRQF----------VEGDVQHWF------------------LPDTYAGVQIRT 665 (1056)
T ss_pred ccccccchhhhhc-CHHHHHHHHHHHHhhcc----------cCCCccccc------------------cccccccchhhc
Confidence 8888878888766 59999998866655433 346666666 122211100034
Q ss_pred CCCCcHHHHHHHHHHHHHHhCChhhHh-------hh----------hHHHHHHHHHHHHHhCCCCCCCccee-cCCCccc
Q 008699 286 APVDSGLWWIILLRAYGKCSGDLLVQE-------RI----------DVQTGIKMILKLCLADGFDMFPTLLV-TDGSCMI 347 (557)
Q Consensus 286 ~sVDAtLWfIial~~Y~k~TGD~sf~~-------~~----------e~~~~ik~IL~~~~~~~f~~~p~lLv-~dG~~wm 347 (557)
..-|--+|.+.++-.|.+.|||.++++ .+ .+..++...++...+. .-|.++. .-|.+|=
T Consensus 666 ~~sDdvvWl~~a~~~Yl~~TGD~aILdE~iPf~~~~~l~~~s~e~~TLyEH~~rAld~av~r---~g~~glpli~gGDWN 742 (1056)
T COG3459 666 SISDDVVWLLKAIADYLKETGDAAILDEVIPFIDGPALPEFSKEQATLYEHCARALDLAVAR---LGPHGLPLILGGDWN 742 (1056)
T ss_pred ccCCceeeeHHHHHHHHHhcCcHhhhhccccccCCCccccccccchhHHHHHHHHHHHHHHh---cCCCCcccccCCccc
Confidence 568999999999999999999999764 11 2455666666666531 2233333 3368888
Q ss_pred ccccCC-----CCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccc
Q 008699 348 DRRMGI-----HGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYS 422 (557)
Q Consensus 348 D~r~pR-----~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~ 422 (557)
|. |-+ -|--|=+--+.+.+|+...+|++. .++.+.+..+++-++++++.+..+=|- .+ -|++ +|+
T Consensus 743 D~-ln~vg~~g~geSv~lgW~l~~tlq~F~~lak~-r~d~~r~~~~~~~~ea~~~~~~~~~wD-g~----wy~r---~~~ 812 (1056)
T COG3459 743 DG-LNLVGNGGKGESVWLGWFLALTLQTFKELAKA-RGDEARADTWAKHVEALREALETNGWD-GE----WYRR---GYG 812 (1056)
T ss_pred cc-ccccccCCccceeehhhHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhcCCC-cc----eEEe---ccc
Confidence 87 633 345577788899999999999997 567788889999999999988888883 11 1221 111
Q ss_pred hhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhhhhccCC
Q 008699 423 YDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMP 502 (557)
Q Consensus 423 ~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~eLltp~p 502 (557)
+.|-+ +|+ |..--.+++.+++.++++++..+++++++-|+.|++ .|+.|.+
T Consensus 813 -----------------------d~g~~-lgs--~e~~E~qI~~i~qs~sVlSg~gd~~ra~kaMd~v~k---~L~~pdg 863 (1056)
T COG3459 813 -----------------------DDGTP-LGS--PEDEECQIDSIPQSWSVLSGEGDKERAEKAMDSVMK---YLVDPDG 863 (1056)
T ss_pred -----------------------cCCCc-ccC--CCCcccceeeeccchhhhhCCCChHHHHHHHHHHHH---hccCccc
Confidence 01111 222 333334688999999999999999999999999999 9999999
Q ss_pred ccccCCCCC----CCCceeeeCCCCCCCCCccccCCcchhh
Q 008699 503 LKICYPALE----GQEWQIITGSDPKNTPWSYHNAGSWPTL 539 (557)
Q Consensus 503 LRsl~P~i~----d~~Wr~~t~gd~knrp~SYHNGgvWPwL 539 (557)
||...||.+ +++|--+|.-..+++-..|--.-.|-++
T Consensus 864 vrL~tppf~~~~~~~gyiK~y~pgvREnGgQYtHa~~w~i~ 904 (1056)
T COG3459 864 VRLFTPPFSYTKGDPGYIKRYPPGVRENGGQYTHAATWVIL 904 (1056)
T ss_pred cEecCCcccccCCCCCeeecCCcccccccceeecccHHHHH
Confidence 999999866 7888777765557777777777777665
No 16
>PLN02567 alpha,alpha-trehalase
Probab=98.84 E-value=4.7e-07 Score=101.04 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=171.0
Q ss_pred CCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCC
Q 008699 198 LNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDF 277 (557)
Q Consensus 198 ~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~ 277 (557)
-.|...|.=|+.-.++|+|..|.++.||+.+..++.++. ..|+|||-- |
T Consensus 148 gRFrE~yyWDSy~i~~GLl~s~~~~~A~~mi~Nf~~~i~----------~~GfIPNg~-------R-------------- 196 (554)
T PLN02567 148 SRFREVYYWDSYWVIRGLLASKMYETAKGVVENLLYLVD----------TYGFVPNGA-------R-------------- 196 (554)
T ss_pred CCcCccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----------HcCcCCCCC-------c--------------
Confidence 469999999999999999999999999999999888765 669999832 1
Q ss_pred CCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHH---hC-CC-------CCCCc---------
Q 008699 278 GEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCL---AD-GF-------DMFPT--------- 337 (557)
Q Consensus 278 Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~---~~-~f-------~~~p~--------- 337 (557)
.||-..==++-+...++.|++.|+|.+|+ .+.+..+.+++. .. +- ++...
T Consensus 197 -----~Yyl~RSQPPlla~mV~~~~~~t~d~~~l-----~~~lp~L~~E~~~W~~~~~~v~i~~~~g~~~~L~rY~~~~~ 266 (554)
T PLN02567 197 -----AYYTNRSQPPLLSAMVLAVYAATKDVELV-----RRALPALLKEHAFWTSGRHTVTIRDANGVVHVLSRYYAMWD 266 (554)
T ss_pred -----ccccCCCCcHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHHHHHHHhcCCcceeeecCCCCcCCCcccccCCC
Confidence 13444445667999999999999999986 333444444433 21 10 11000
Q ss_pred ----------c-ee-------------------cC-C----Ccccccc-----cCC-CCCceeehHHHHHHHHHHHHhhC
Q 008699 338 ----------L-LV-------------------TD-G----SCMIDRR-----MGI-HGHPLEIQALFYSALLCAREMLA 376 (557)
Q Consensus 338 ----------l-Lv-------------------~d-G----~~wmD~r-----~pR-~G~PVEIQALwYnALr~a~~L~~ 376 (557)
. .+ .+ | +-|+... +-. .=.||..||+.|.+-+.+++|++
T Consensus 267 ~PrpEsyreD~~~a~~~~~~~~~~~~y~~l~a~aESGwDfSsRw~~~~~~l~ti~t~~i~pVDLNa~L~~~e~~LA~la~ 346 (554)
T PLN02567 267 KPRPESSRIDKEVASKFSSSSEKQQLYRDIASAAESGWDFSSRWMRDGSNLTTLRTTSILPVDLNAFLLKMELDIAFFAK 346 (554)
T ss_pred CCCCccccccHHHHhcCCCchHHHHHHHHHHHHHHcCCCchhhhccccccccccccccccCccHHHHHHHHHHHHHHHHH
Confidence 0 00 00 1 1132110 000 01579999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeecccc
Q 008699 377 PEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQ 456 (557)
Q Consensus 377 ~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~ 456 (557)
.+ ++.+.+.++.+++..++..|++.+|.+..++. |.| +..++... . ..+ |- +.
T Consensus 347 ~l-G~~~~a~~~~~~A~~~~~aI~~~lWdee~G~y--~Dy-------dl~~~~~~-~-~~~------------~~---~~ 399 (554)
T PLN02567 347 LL-GDKATAERFLKAAKARKRAINAVLWNEEMGQW--LDY-------WLPPNGAT-C-QES------------YT---WD 399 (554)
T ss_pred Hh-CChHHHHHHHHHHHHHHHHHHHHhcCcccCeE--Eee-------cccccccc-c-ccc------------cc---cc
Confidence 74 55567788889999999999999998665533 111 11111000 0 000 00 00
Q ss_pred CCccccccccccchhhhhcCCCCHH--HHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCC
Q 008699 457 PAHMDFRFFSLGNIWSIVNGLATRD--QSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAG 534 (557)
Q Consensus 457 P~~~D~R~falGNlLAl~~gLl~~e--qa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGg 534 (557)
+.... +.+...|.+.++.++++++ ++++|++.+.+. .++.|.|+.+-. ..+..|=.|.
T Consensus 400 ~~~~~-~~~~~s~f~PLw~g~~~~~~~~a~~v~~~l~~~--~l~~pgGiptsl-----------------~~sg~qWdgP 459 (554)
T PLN02567 400 AENQN-TNVYASNFVPLWCGVVPPGDAKVEKVVESLKSS--GLVLPAGIATSL-----------------RNTGQQWDFP 459 (554)
T ss_pred ccccc-cCccHHHHHHHHcCCCChhhHHHHHHHHHHHhc--cCccCCcccCCC-----------------CCccccCCCC
Confidence 11110 2344567777889999986 578899888763 677787775411 1233577888
Q ss_pred -cchhhhHHHHHHHHHh
Q 008699 535 -SWPTLLWQVSHGSIVG 550 (557)
Q Consensus 535 -vWPwLLg~y~~A~lk~ 550 (557)
+||=+.|..+.+..+.
T Consensus 460 n~W~pl~~l~i~GL~~y 476 (554)
T PLN02567 460 NAWAPLQHMIVEGLAAS 476 (554)
T ss_pred CcCHhHHHHHHHHHHHc
Confidence 9999999998887653
No 17
>PRK13272 treA trehalase; Provisional
Probab=98.66 E-value=2.7e-06 Score=94.63 Aligned_cols=286 Identities=14% Similarity=0.149 Sum_probs=180.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCcceEEeecCCCC-CccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhh
Q 008699 161 VDCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTS-SNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEK 239 (557)
Q Consensus 161 ~~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~-a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~ 239 (557)
+.+-++.-|..|-+...... ..+++.-..+.- -..-.|...+.=|+.-.++|+|.+|..++||+.+..++-+-.
T Consensus 120 ~~~~i~~lW~~L~R~~~~~~--~~~Sli~lp~p~iVPGGRFrE~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf~~~i~--- 194 (542)
T PRK13272 120 LREHIDALWPKLVRSQEQVP--AHSSLLALPHPYVVPGGRFREVYYWDSYFTMLGLVKSGQTTLSRQMLDNFAYLID--- 194 (542)
T ss_pred HHHHHHHHHHHhccccCCCC--CcCccccCCCCeeecCCCccchhhhHHHHHHHhhhhcCcHHHHHHHHHHHHHHHH---
Confidence 34556666777776443211 134443332221 122479999999999999999999999999999987776532
Q ss_pred hcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHH
Q 008699 240 TMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTG 319 (557)
Q Consensus 240 ~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ 319 (557)
.-|.|||-=.+ ||-+===.+.|.--+..|++.|||..+. +..+.
T Consensus 195 -------~yGfIPNG~R~--------------------------YYl~RSQPP~l~~Mv~~~~~~t~d~~~~---~~lp~ 238 (542)
T PRK13272 195 -------TYGHIPNGNRT--------------------------YYLSRSQPPFFSYMVELQAGVEGDAAYQ---RYLPQ 238 (542)
T ss_pred -------HcCcCcCCchh--------------------------ccccCCCchhHHHHHHHHHHhcChHHHH---HHHHH
Confidence 55999983211 2222222344788889999999998773 23333
Q ss_pred HHHHHH-HHHhC----------CCCCCCcc--ee---------------------------------------cC-C---
Q 008699 320 IKMILK-LCLAD----------GFDMFPTL--LV---------------------------------------TD-G--- 343 (557)
Q Consensus 320 ik~IL~-~~~~~----------~f~~~p~l--Lv---------------------------------------~d-G--- 343 (557)
+++=.+ |+... ++...+++ +- .+ |
T Consensus 239 l~kEy~~Wm~~~~~~~~~~~~~~~v~~~~g~~L~rY~~~~~~PRpEsy~eD~~~a~~~~~~~~~~~Y~~l~a~aESGWDf 318 (542)
T PRK13272 239 LQKEYAYWMQGSDDLQPGQAARHVVRLADGSLLNRYWDERDTPRPEAWLHDTRTAAEAKDRPAAEVYRDLRAGAESGWDY 318 (542)
T ss_pred HHHHHHHHcCCCCCCCCccccceeEecCCCcchhhhcCCCCCCCChHHHHHHHHhcCcccCcHHHHHHHHHHHHhcCCCc
Confidence 333222 22211 00000000 00 00 0
Q ss_pred -Ccccccc--c----CCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhc
Q 008699 344 -SCMIDRR--M----GIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRY 416 (557)
Q Consensus 344 -~~wmD~r--~----pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~ 416 (557)
+-|+... + .+.=.||..|||.|.+-+..+++++. .++.+.+.++.++++.++..|++.+|.+ .++. |.|
T Consensus 319 SsRw~~~~~~L~~i~t~~IvpVDLNalL~~~e~~LA~~~~~-lG~~~~a~~~~~~A~~r~~aI~~~lWde-~G~~--~DY 394 (542)
T PRK13272 319 SSRWLADGKTLASIRTTAIVPVDLNSLLYHLERTLAQACAS-SGLAACSQDYAALAQQRKQAIDAHLWNP-AGYY--ADY 394 (542)
T ss_pred hhhhccccccccccCcccccCccHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhccCc-CceE--Eee
Confidence 1122100 0 01114899999999999999999987 4555777788889999999999999965 3322 111
Q ss_pred cccccchhhhhccCCCCCCCCcccccccCCCCceeeccccCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhh
Q 008699 417 KTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWAD 496 (557)
Q Consensus 417 ~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~e 496 (557)
+++.+... ..+...|++.++.++++++|++++++.+.. .
T Consensus 395 -------------------------------------D~~~~~~~-~~~s~a~f~PLwag~a~~~~a~~l~~~l~~---~ 433 (542)
T PRK13272 395 -------------------------------------DWQTRTLS-EQVTAAALYPLFAGLASDDRAKRTADSVRA---Q 433 (542)
T ss_pred -------------------------------------ccCCCCcc-ccccHHHHHHHHcCCCCHHHHHHHHHHHHH---h
Confidence 11111110 134556777889999999999999999987 6
Q ss_pred hhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCC-cchhhhHHHHHHHHH
Q 008699 497 LVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAG-SWPTLLWQVSHGSIV 549 (557)
Q Consensus 497 Lltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGg-vWPwLLg~y~~A~lk 549 (557)
++.|.|+-+..| . +..|=.|. +||=+-|..+.+..+
T Consensus 434 ~l~~gGlpTt~~--~---------------sgqQWD~PN~WaPlq~i~i~GL~~ 470 (542)
T PRK13272 434 LLRPGGLATTAL--K---------------TGQQWDEPNGWAPLQWVAVDGLRR 470 (542)
T ss_pred ccCCCCcCCCCC--C---------------ccccCCCCCccHhHHHHHHHHHHH
Confidence 777888877766 1 12466677 899999999988765
No 18
>PRK13270 treF trehalase; Provisional
Probab=98.56 E-value=1e-05 Score=90.29 Aligned_cols=251 Identities=12% Similarity=0.184 Sum_probs=157.8
Q ss_pred CCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCC
Q 008699 198 LNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDF 277 (557)
Q Consensus 198 ~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~ 277 (557)
-.|...+.=|+.-.+.|+|.+|..++||+.+..++-+-. .-|.|||-=.+-
T Consensus 167 GRFrE~YYWDSYwi~~GLl~sg~~~~a~~mi~Nf~~li~----------~yGfIPNG~R~Y------------------- 217 (549)
T PRK13270 167 GRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIE----------NYGHIPNGNRTY------------------- 217 (549)
T ss_pred CCcccchhhhHHHHHHHhhhcCcHHHHHHHHHHHHHHHH----------HcCcCcCCchhc-------------------
Confidence 479999999999999999999999999999988776532 559999832111
Q ss_pred CCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHHhCCC------CCCCcceecCC--------
Q 008699 278 GEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGF------DMFPTLLVTDG-------- 343 (557)
Q Consensus 278 Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~~~~f------~~~p~lLv~dG-------- 343 (557)
|.+..= .+.|...+..|++ .|.++++ +..+.|++=.++-..++- .......+++|
T Consensus 218 ------Yl~RSQ-PP~l~~Mv~~y~~--~~~~~~~--~~lp~l~~E~~fWm~~~~~~~~~~~~~~~v~~~~g~~L~rY~~ 286 (549)
T PRK13270 218 ------YLSRSQ-PPVFALMVELFEE--DGVRGAR--RYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWD 286 (549)
T ss_pred ------cccCCC-CHhHHHHHHHHHh--cCHHHHH--HHHHHHHHHHHHHcCCCCccCcccccceeEecCCCCccccccC
Confidence 122222 3336666778876 4556641 233333332221111100 00000000010
Q ss_pred ------------------------------------------Ccccccc--c--C--CCCCceeehHHHHHHHHHHHHhh
Q 008699 344 ------------------------------------------SCMIDRR--M--G--IHGHPLEIQALFYSALLCAREML 375 (557)
Q Consensus 344 ------------------------------------------~~wmD~r--~--p--R~G~PVEIQALwYnALr~a~~L~ 375 (557)
+-|+... + - +.=.||..||+.|.+-+.+++++
T Consensus 287 ~~~~PRpEsyreD~~~a~~~~rp~~~~Y~~lra~aESGWDfSsRW~~~~~~L~~i~T~~iipVDLNaiL~~~e~~LA~~a 366 (549)
T PRK13270 287 DRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRDTGRLASIRTTQFIPIDLNAFLYKLESAIANIS 366 (549)
T ss_pred CCCCCCCchhHHHHHhhcccCCchHHHHHHHHHHHHcCCCchhhcccCCcccccccccCcchhhHHHHHHHHHHHHHHHH
Confidence 1122110 0 0 01158999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccc
Q 008699 376 APEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNL 455 (557)
Q Consensus 376 ~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv 455 (557)
+. .++.+.+.++.++++.+++.|++.+|.+..++. +.=++
T Consensus 367 ~~-lG~~~~a~~~~~~A~~r~~AI~~~LWnee~G~~---------------------------------------~DYD~ 406 (549)
T PRK13270 367 AL-KGEKETEALFRQKASARRDAVNRYLWDDENGIY---------------------------------------RDYDW 406 (549)
T ss_pred HH-hCChHHHHHHHHHHHHHHHHHHHhccCcccCeE---------------------------------------Eeccc
Confidence 87 456677888899999999999999996544322 11111
Q ss_pred cCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCC-
Q 008699 456 QPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAG- 534 (557)
Q Consensus 456 ~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGg- 534 (557)
+-+.. +.+...|++-++.|+++++|++++++.+.. .++.|-|+-+. ...+..|=.|.
T Consensus 407 ~~~~~--~~~s~a~f~PLwaG~a~~~qa~~l~~~l~~---~ll~pGGl~tS-----------------~~~sgqQWD~PN 464 (549)
T PRK13270 407 RREQL--ALFSAAAIVPLYVGMANHEQADRLANAVRS---RLLTPGGILAS-----------------EYETGEQWDKPN 464 (549)
T ss_pred ccCcc--ccccHHHHHHHHhCCCCHHHHHHHHHHHHH---hcccCCCcCCC-----------------CCCCcccCCCCC
Confidence 11111 245667777889999999999999999886 66655554431 11233556667
Q ss_pred cchhhhHHHHHHHHHh
Q 008699 535 SWPTLLWQVSHGSIVG 550 (557)
Q Consensus 535 vWPwLLg~y~~A~lk~ 550 (557)
+||=+-|..+.+..+.
T Consensus 465 ~WaPlqwmiieGL~ry 480 (549)
T PRK13270 465 GWAPLQWMAIQGFKMY 480 (549)
T ss_pred CCccHHHHHHHHHHHc
Confidence 8999999998887653
No 19
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=98.55 E-value=2.8e-06 Score=93.99 Aligned_cols=259 Identities=16% Similarity=0.177 Sum_probs=154.2
Q ss_pred CCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCC
Q 008699 198 LNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDF 277 (557)
Q Consensus 198 ~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~ 277 (557)
-.|...+.=|+.-.+.|||..|..+.||+.+..++.+-. .-|.|||--.+
T Consensus 124 GRF~E~YyWDSYfi~~GLl~s~~~~~a~~mi~Nf~~~i~----------~yGfipNg~R~-------------------- 173 (512)
T PF01204_consen 124 GRFREMYYWDSYFIILGLLASGMYETAKGMIENFLYLID----------RYGFIPNGNRT-------------------- 173 (512)
T ss_dssp TTB-S-BHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH----------HHSS--SBSBG--------------------
T ss_pred CCcccchhHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------HhCcCCCCccH--------------------
Confidence 378889999999999999999999999999988776532 45999994321
Q ss_pred CCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHH-HHHHHHhCCCCCCCcce----e------------
Q 008699 278 GEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKM-ILKLCLADGFDMFPTLL----V------------ 340 (557)
Q Consensus 278 Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~-IL~~~~~~~f~~~p~lL----v------------ 340 (557)
||-+===++.+...+.+|++.|+|.++++ +..+.|.. ..-|+...+.. .-+++ .
T Consensus 174 ------Yyl~RSQPPlla~mV~~~y~~t~d~~~l~--~~lp~L~ke~~fW~~~~r~~-~~~~~~~~~~l~ry~~~~~~pr 244 (512)
T PF01204_consen 174 ------YYLNRSQPPLLAQMVREYYEATKDKAFLR--EALPALEKEYEFWMDNNRDV-RVTGLGKGYGLNRYGDPWNSPR 244 (512)
T ss_dssp ------GGTT---S--HHHHHHHHHHHHHTCHHHH--HHHHHHHHHHHHHCCCEEET-TEEEECTSEECCHHHHCHHCT-
T ss_pred ------HhccCCCCchHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHCCCCcce-eecCCCccCCcccccCCCCCCc
Confidence 22222223458999999999999999963 33333332 22333110000 00000 0
Q ss_pred cC-------------------------------C----Ccccccc------c----CCCCCceeehHHHHHHHHHHHHhh
Q 008699 341 TD-------------------------------G----SCMIDRR------M----GIHGHPLEIQALFYSALLCAREML 375 (557)
Q Consensus 341 ~d-------------------------------G----~~wmD~r------~----pR~G~PVEIQALwYnALr~a~~L~ 375 (557)
++ | +-|+... + ...-.||..||+.|.+.+.+++|+
T Consensus 245 pEsy~eD~~~a~~~~~~~~~~~~y~~i~saaESGwDfssRw~~~sg~d~~~l~~~~t~~iipVDLNa~L~~~e~~LA~~a 324 (512)
T PF01204_consen 245 PESYREDVETAENFPSERDKEELYRDIASAAESGWDFSSRWFRDSGFDNSNLFTIRTTDIIPVDLNAILYRNEKDLAEFA 324 (512)
T ss_dssp CCCCCHHHHHHHCHCHTSTCHHHHCHHHHHHHCCHHCTGGGBSSECCEE-TCHHCECCCEE-HHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHhhcccchHHHHhhcccchhhhhhhccceeeecCCCchhhhhccceeeecCchHHHHHHHHHHHHHHHH
Confidence 00 1 2233220 0 122257899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchhhhhccCCCCCCCCcccccccCCCCceeeccc
Q 008699 376 APEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWMPNKGGYLIGNL 455 (557)
Q Consensus 376 ~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ipd~L~d~~~~~ggYl~gnv 455 (557)
+. .++.+.+....+++..+++.|+++||.+.+++. |.| ++
T Consensus 325 ~~-lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~--~Dy-------------------------------------d~ 364 (512)
T PF01204_consen 325 EL-LGDQEKAEEYRQRAEERKEAINQYLWDEEDGFY--YDY-------------------------------------DL 364 (512)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE----E-------------------------------------ET
T ss_pred HH-cCchhHHHHHHHHHHHHHHHHHHhCccCCCCeE--Eee-------------------------------------eC
Confidence 98 567788889999999999999999997655432 111 11
Q ss_pred cCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhhhhccCCccccCCCCCCCCceeeeCCCCCCCCCccccCC-
Q 008699 456 QPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAG- 534 (557)
Q Consensus 456 ~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~eLltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGg- 534 (557)
..... -+.+...|.+.++.++++++|++++++.+.. .+.+...+.. |. + .-.....+..|=.|.
T Consensus 365 ~~~~~-~~~~~~a~f~PL~ag~a~~~qa~~~~~~~l~---~~~~~~~l~~--~~-------g--~~ts~~~~~~qWD~Pn 429 (512)
T PF01204_consen 365 RTGKR-SPVFSPANFLPLWAGIASPEQAERLVARALD---YLERSGLLTF--PG-------G--IPTSLYDTGQQWDGPN 429 (512)
T ss_dssp TTTEE-GG--BGGGGHHHHTT-S-HHHHHHHHHHHHH---HCTTCCSSC---CS-------E--CTTCTTTTTSTTSTTE
T ss_pred CCCCC-cccccHHHHHHHHHhhcCHhhhhhHHHHHHH---HHHhcCCccc--CC-------C--CCCccccccccCCCCC
Confidence 11111 0134556677889999999999888887776 4443333331 10 0 001222255566677
Q ss_pred cchhhhHHHHHHHHHh
Q 008699 535 SWPTLLWQVSHGSIVG 550 (557)
Q Consensus 535 vWPwLLg~y~~A~lk~ 550 (557)
+||=+-|+.+.++.|.
T Consensus 430 ~WaPlq~~~i~GL~~y 445 (512)
T PF01204_consen 430 VWAPLQWMAIEGLRRY 445 (512)
T ss_dssp EEHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHhC
Confidence 7999999998887654
No 20
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.54 E-value=8.4e-06 Score=92.17 Aligned_cols=180 Identities=17% Similarity=0.072 Sum_probs=120.7
Q ss_pred CCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCC
Q 008699 200 YDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGE 279 (557)
Q Consensus 200 Y~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge 279 (557)
|.-+|+||+.+++++++..|..+.++.++..+...|.....+...-..+|- + ..+...+--|.
T Consensus 282 Y~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~~~~~y~~~g~---------------~--~~~~w~~~~~~ 344 (612)
T COG3387 282 YRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGKLYHKYSIDGS---------------D--LAESWLPVSGY 344 (612)
T ss_pred ceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCceeeEEecCCC---------------c--cccccccccCC
Confidence 888999999999999999999999999999998887742210000001110 0 00111110000
Q ss_pred CccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHHhCCCCCC-CcceecCCCcccccccCCCCCce
Q 008699 280 AAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMF-PTLLVTDGSCMIDRRMGIHGHPL 358 (557)
Q Consensus 280 ~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~~~~f~~~-p~lLv~dG~~wmD~r~pR~G~PV 358 (557)
. ...---+|-+.|-.+++..|.+.++|.-+.. +..+..+....+++.. -+.. ..+-.++...|=.+ .|+-.
T Consensus 345 ~-~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~WEer----~g~~~ 416 (612)
T COG3387 345 Y-NSFPVRIGNTALVQGALDVYGSIMNDIYFYA-KYYAIYILPAADYLRR--MEKIKANLPTPDFDLWEER----GGHFT 416 (612)
T ss_pred C-CCCceEEcchhhHHHHHHHHHHHHHHHHHHH-hhcchhhHHHHHHHHH--HHhhhcCCCCCccceeccc----CCccc
Confidence 0 1123467889999999999999999988764 3345555655555554 1111 12223555666544 45778
Q ss_pred eehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccc
Q 008699 359 EIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWI 405 (557)
Q Consensus 359 EIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~ 405 (557)
+..+.-|.||.++..|+... ++...++.+.+.+..+++.+.+.++.
T Consensus 417 yt~~~~~agLd~A~~lA~~~-gd~~~a~~~~~~ad~ik~~v~~~~~~ 462 (612)
T COG3387 417 YTKATVYAGLDAAADLAEEF-GDKGSAEHWRKTADELKEAVLRRGYA 462 (612)
T ss_pred chHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999984 47778888888888888888877664
No 21
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=98.45 E-value=6.5e-05 Score=85.57 Aligned_cols=196 Identities=17% Similarity=0.144 Sum_probs=131.6
Q ss_pred chHHHHHHHHHHHHHhhcccCCCcc-eEEeecCCCC----CccCC--CCccchhhhHHHHHHHHccCCHHHHHHHHHHHH
Q 008699 160 TVDCLEDEAWNLLRDSMVYYCGSPI-GTIAANDPTS----SNVLN--YDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTL 232 (557)
Q Consensus 160 ~~~~~~~~A~~lLr~~~~~~~~~p~-GtiAa~d~~~----a~~~n--Y~~vfgRDt~ISllglL~~G~peiar~~L~~~~ 232 (557)
...+++.++.-.|+...-. +|- +.|||...+- .+..| |.=||.||+..++.+|+..|..+.++.|+..+.
T Consensus 248 ~~~~~~~rS~lvLK~~~d~---~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~ 324 (648)
T TIGR01535 248 KGNSLYYVSMMILKAHEDK---TNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDVDSALRSLDYLA 324 (648)
T ss_pred hHHHHHHHHHHHHHHhcCC---CCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5667888888888773222 133 4555542211 22334 999999999999999999999999999999998
Q ss_pred hhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHh
Q 008699 233 QLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQE 312 (557)
Q Consensus 233 ~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~ 312 (557)
..|. ..|..|-...| + |+ +.-.+ --.|-+=..|++++.+.+. +.
T Consensus 325 ~~~~----------~~G~~lq~y~v-----d-----G~----~~~~~------iQlD~~g~~i~~~~~l~~~--~~---- 368 (648)
T TIGR01535 325 KVQQ----------DNGMFPQNSWV-----D-----GK----PYWTG------IQLDETAFPILLAYRLHRY--DH---- 368 (648)
T ss_pred HHhc----------cCCCcCceecc-----C-----CC----CCCCC------ccccHHHHHHHHHHHHHHc--Cc----
Confidence 8876 34544442311 1 11 11111 3567776678888766653 32
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCCcceecCCCcccccccCCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008699 313 RIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRL 392 (557)
Q Consensus 313 ~~e~~~~ik~IL~~~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra 392 (557)
..+.+.|+.+.+++...+ -.++-.-|=- |.|+--..-|-.|.||.++++|++.. ++.+.+++..+.+
T Consensus 369 -~~~~~~vk~aadfl~~~~-------p~p~~d~WEe----r~g~~~~T~a~v~aaL~~Aa~iA~~~-g~~~~a~~w~~~A 435 (648)
T TIGR01535 369 -AFYDKMLKPAADFIVKNG-------PKTGQERWEE----IGGYSPSTLAAEIAGLTAAADIAEQN-GDAGSAQKYRETA 435 (648)
T ss_pred -HHHHHHHHHHHHHHHHcC-------CCCCCCcccc----cCCcCchhHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHH
Confidence 236778999999987642 1234345543 34554566677779999999999974 4446777888888
Q ss_pred HHHHHHHHhhccccc
Q 008699 393 VALSFHIREYYWIDL 407 (557)
Q Consensus 393 ~~L~~~f~~~FW~d~ 407 (557)
..+++.+.++.|.+.
T Consensus 436 d~i~~~i~~~~~~~~ 450 (648)
T TIGR01535 436 DNWQKLIENWTFTTN 450 (648)
T ss_pred HHHHHHHHHhCcCCC
Confidence 888999999998643
No 22
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=97.66 E-value=0.0006 Score=74.09 Aligned_cols=223 Identities=18% Similarity=0.164 Sum_probs=133.9
Q ss_pred CCCcceEEeecCCCCCccCCCCccchhhhHHHHHHH--HccCCHHHHHHHHHHHHhhhhhhhhcCCCCCC------CCCC
Q 008699 180 CGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAF--LLKGEYDIVRNFILHTLQLQSWEKTMDCHSPG------QGLM 251 (557)
Q Consensus 180 ~~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllgl--L~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~------~Gli 251 (557)
...+.=+|..-|= +.-|-||+.--+--. |+..++++++ .++.+...|..--.+|+|.-. -|+-
T Consensus 29 ~~~~~tFViTGDI--------pAmWLRDS~~Q~~pYl~l~~~d~~l~~-li~G~I~rQa~~I~~dPYaNAF~~~~~s~~~ 99 (424)
T PF06824_consen 29 DEDPDTFVITGDI--------PAMWLRDSAAQLRPYLPLAKEDPSLAR-LIRGVINRQARYILIDPYANAFNPPPESGIP 99 (424)
T ss_dssp TSTSEEEE-SBSS--------SSEEHHHHHHHCGGGGGGGCC-HHHHH-HHHHHHHHHHHHHHH-TT-SEEESS-----T
T ss_pred CCCCCeEEEecCc--------hhhhccccHhHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcchhhcccCCccccccc
Confidence 4555666666442 267999987665443 4666776655 555666778777777888521 1111
Q ss_pred CCcceeecccCCCCCCCcccccCCCC-CCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHHhC
Q 008699 252 PASFKVRTVPLDGDDSATEEVLDPDF-GEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLAD 330 (557)
Q Consensus 252 P~sfKv~h~~~r~~~~~~e~~l~ad~-Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~~~ 330 (557)
|+.- .| ...+...+.+ +...+.+=--+||.-.||-+.+.|++.|||.++.. ..+..+++.|++-...+
T Consensus 100 ~~~~--~~--------~~~D~~~~~~~~~~v~ErKyElDSL~~~l~La~~y~~~Tgd~~~f~-~~~~~A~~~il~~~~~e 168 (424)
T PF06824_consen 100 PNGN--GH--------WQSDTTEMPYDPPWVWERKYELDSLCYFLQLAYQYWKATGDTSFFD-EDWLRAVRLILDTWRTE 168 (424)
T ss_dssp SS-T--SG--------CCGSBS------TTEEE----HHHHHHHHHHHHHHHHHH--GTTSS-HHHHHHHHHHHHHHHHT
T ss_pred cccc--CC--------CCCCccCCCcCCCceeeecchhhhhhHHHHHHHHHHHhhCChhhhh-HHHHHHHHHHHHHHHHH
Confidence 2110 00 0011111111 11222344569999999999999999999999985 55899999999998742
Q ss_pred CC---CCC------------------Ccce-------ec-CCCccccccc----CCCCCceeehHHHHHHHHHHHHhhCC
Q 008699 331 GF---DMF------------------PTLL-------VT-DGSCMIDRRM----GIHGHPLEIQALFYSALLCAREMLAP 377 (557)
Q Consensus 331 ~f---~~~------------------p~lL-------v~-dG~~wmD~r~----pR~G~PVEIQALwYnALr~a~~L~~~ 377 (557)
.- +.+ +++. +. -|+.|---|= -.+||.|--|++.--+|+.+++|+..
T Consensus 169 q~~t~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~pv~~tGli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~ 248 (424)
T PF06824_consen 169 QRPTYDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGNPVAYTGLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRA 248 (424)
T ss_dssp TG------SSSCS-S---BESBSSGGGS-HHHHT-S----SSS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccCCCcceeeccCCCCCccccCCCcCCcCCCCCceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHH
Confidence 11 110 0111 11 1344443331 36889999999999999999999986
Q ss_pred CCCCH--HHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccc
Q 008699 378 EDGSA--DLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYS 422 (557)
Q Consensus 378 ~~~~~--~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~ 422 (557)
...+. +.+++..+.+..+++.|.++.-++......+|+|+.++||
T Consensus 249 ~~~~~~~~la~~~~~la~eI~~gI~~~giv~h~~~g~iyAYEVDG~G 295 (424)
T PF06824_consen 249 LGWDDSAELAERARALADEIRAGIEKHGIVEHPKFGKIYAYEVDGFG 295 (424)
T ss_dssp TT-THHHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE-SEE-SSS
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHheEEeCCCCCeEEEEEecCCC
Confidence 55443 5677777777788899999988888788899999998887
No 23
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=97.25 E-value=0.014 Score=68.54 Aligned_cols=177 Identities=11% Similarity=0.138 Sum_probs=97.8
Q ss_pred cCCCCCc------eeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchh
Q 008699 351 MGIHGHP------LEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYD 424 (557)
Q Consensus 351 ~pR~G~P------VEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~ 424 (557)
+||.=+| |.-.+..+.+-+.|++||..++...+.+ +..+....|.+.+++.-|-+..+++ |.+.. ..+
T Consensus 545 YPRa~~p~~~e~hvDl~sWMa~~a~~M~~IA~~L~~~d~~~-ef~~~~~~i~~~l~~~hWdeedgfY--yD~~~---~~~ 618 (801)
T PF03200_consen 545 YPRASHPSDSERHVDLTSWMAFFALNMARIALELGKEDDAY-EFFEHFEYISDALNKLHWDEEDGFY--YDVGL---HPD 618 (801)
T ss_pred CCCCCCCCccceechHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHHHHhcCCcccCce--eeecc---ccc
Confidence 5775444 5556667777788888887755433333 2566677788888888897655533 11100 001
Q ss_pred hhh--ccCCCCCC-CCcccccccCCCCceeeccccCCcccccccccc--chhhhhcCCCCH--HHHHHHHHHHHHhhhhh
Q 008699 425 AVN--KFNIYPDQ-IPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLG--NIWSIVNGLATR--DQSHAILDLMEAKWADL 497 (557)
Q Consensus 425 avn--~fni~pd~-ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falG--NlLAl~~gLl~~--eqa~aVld~v~~~~~eL 497 (557)
+|. .....++. .+.-+.+.+..+ |.. .+ ....| +++.++.+|+++ ++-++|++.+..+ +++
T Consensus 619 ~v~l~~~~~~~~~~~~~~~~r~~~~~---------~~~-~~-v~~~Gyvsl~Plll~ll~~ds~~L~~~L~~l~D~-~ef 686 (801)
T PF03200_consen 619 AVRLEWKEVLENGQFRRELVRVVRGE---------PQL-QL-VCHFGYVSLFPLLLGLLPPDSERLERLLERLLDE-DEF 686 (801)
T ss_pred cceecccccccccccchhheecccCC---------ccc-cc-eeeecccCCCchhhccCCCCHHHHHHHHHHhcCh-hhc
Confidence 110 00000000 000000011000 000 00 01111 233455777775 4778899999842 399
Q ss_pred hccCCccccCCCCCCCCceeeeCCCCCCCCCccccCCcchhhhHHHHHHHHHhh
Q 008699 498 VADMPLKICYPALEGQEWQIITGSDPKNTPWSYHNAGSWPTLLWQVSHGSIVGL 551 (557)
Q Consensus 498 ltp~pLRsl~P~i~d~~Wr~~t~gd~knrp~SYHNGgvWPwLLg~y~~A~lk~~ 551 (557)
.+|+|||+|+. .++-|... + -+.+-+|=.|.||.=+.+..+.|..+.-
T Consensus 687 ~s~yGirSLSk--~~~~y~~~---~-~e~d~~YWRGpIW~~~NyL~i~aL~~y~ 734 (801)
T PF03200_consen 687 WSPYGIRSLSK--SDPFYGPG---E-NEHDPSYWRGPIWIPINYLLIEALRRYG 734 (801)
T ss_pred cCCCCCccccC--CCcccccc---C-CccCCCcccCccchhhHHHHHHHHHHHh
Confidence 99999999998 66654321 1 1224489999999999999999876654
No 24
>COG1626 TreA Neutral trehalase [Carbohydrate transport and metabolism]
Probab=97.12 E-value=0.068 Score=59.85 Aligned_cols=109 Identities=22% Similarity=0.316 Sum_probs=82.6
Q ss_pred CceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhccccccchhhhhccCCCCCC
Q 008699 356 HPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIYPDQ 435 (557)
Q Consensus 356 ~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~~e~y~~~avn~fni~pd~ 435 (557)
-|++-|++.|.-....+.+... .++.+..+...+++.+-+..|++++|.+...+..= |.++. +
T Consensus 352 ~p~dlna~~y~~e~~~~~~~~~-~~~~~~~e~~~~~A~~R~~aI~~ylW~~e~G~~~D--Yd~k~-------~------- 414 (558)
T COG1626 352 LPVDLNALLYKLEEIIANISAI-KGDKETAERYQRKAEARRCAINKYLWDDEAGQYND--YDWKL-------K------- 414 (558)
T ss_pred chhhhhhHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHccccccceeeh--hhhhc-------c-------
Confidence 5689999999999999988886 45777788888888888999999999875543311 11110 0
Q ss_pred CCcccccccCCCCceeeccccCCccccccccccchhhhhcCCCCHHHHHHHHHHHHHhhhhhhccCCccccCC
Q 008699 436 IPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGNIWSIVNGLATRDQSHAILDLMEAKWADLVADMPLKICYP 508 (557)
Q Consensus 436 ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGNlLAl~~gLl~~eqa~aVld~v~~~~~eLltp~pLRsl~P 508 (557)
.+.+ | +...++++++.|+++++|++.+++.+.. .|..|-||-++.|
T Consensus 415 ------~~~~----y--------------~~a~~~~plw~G~a~~era~~~a~~~~~---~l~~pGGl~ast~ 460 (558)
T COG1626 415 ------KRRA----Y--------------LSAAALWPLWVGLATPERAQRLADAALS---MLEQPGGLSASTP 460 (558)
T ss_pred ------cccc----c--------------cchhhhhhccCCCCCHHHHHHHHHHHHH---HhcCCCceecccc
Confidence 0000 1 2223466788999999999999999998 8999999999998
No 25
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.016 Score=61.88 Aligned_cols=206 Identities=19% Similarity=0.166 Sum_probs=129.8
Q ss_pred ccchhhhHHHHHHH--HccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCCCCC
Q 008699 202 QVFIRDFIPSGIAF--LLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPDFGE 279 (557)
Q Consensus 202 ~vfgRDt~ISllgl--L~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge 279 (557)
.-|-||+.--+.-. |+.-++++++ .+..+.+.|..--.+|+|.- ..-+..+.--|..++ ....|--.|
T Consensus 60 AmWLRDStaQvrPYL~lAkeD~~l~~-li~GlvkrQ~~~i~~DPYAN--AFn~~~n~~Ghq~D~-------T~m~~~vwE 129 (434)
T COG3538 60 AMWLRDSTAQVRPYLPLAKEDEELRR-LIAGLVKRQARYILLDPYAN--AFNETANGAGHQTDH-------TEMNPWVWE 129 (434)
T ss_pred HHHHhcchhhhccceeecccCHHHHH-HHHHHHHHHHHHhhcChhhh--hcccccccCCcccCc-------ccccchhhe
Confidence 57999987766554 3665555555 55567777777666788742 111221111232211 011111122
Q ss_pred CccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHH-hCCCCC-------------CCccee-----
Q 008699 280 AAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCL-ADGFDM-------------FPTLLV----- 340 (557)
Q Consensus 280 ~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~-~~~f~~-------------~p~lLv----- 340 (557)
|---+||--..|-+.+.|.|.|||.+-. .+++..+++.|++... .+.+.. .+++.-
T Consensus 130 ----RKYEiDSLCYPiqLAYl~wk~Tg~t~~F-de~f~~a~~~il~~~~~eQ~h~~~spY~F~R~t~r~~dTL~~~G~G~ 204 (434)
T COG3538 130 ----RKYEIDSLCYPIQLAYLYWKATGDTSQF-DEDFRQAVETILRVWKVEQDHETDSPYRFERDTDRKSDTLGRAGKGA 204 (434)
T ss_pred ----eeeeccchhhHHHHHHHHHHhcCCcccc-CHHHHHHHHHHHHHHhHhhccCCCCCeeeeccccccchhhhhCCCCC
Confidence 4457999999999999999999999865 3788999999999885 222210 112221
Q ss_pred ---cCCCccccccc----CCCCCceeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhh
Q 008699 341 ---TDGSCMIDRRM----GIHGHPLEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEI 413 (557)
Q Consensus 341 ---~dG~~wmD~r~----pR~G~PVEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i 413 (557)
+.|.+|---|- =.+||.|=-|..--=.|..+.+|+....++++.+++...-..++.+.|.++=-++.-..-++
T Consensus 205 ~~a~tGM~wSgFRPSDDAC~YgYliPsNmFaVVvl~y~~ei~~~~~~~~~~a~~a~~L~~eIq~Gi~~~g~~~~~~~~~i 284 (434)
T COG3538 205 PTAPTGMTWSGFRPSDDACEYGYLIPSNMFAVVVLSYLQEILEALPHDAEIARQAKELANEIQQGIEQFGKMDHPKGGEI 284 (434)
T ss_pred CcCcccceecCcCCCccchhcccccccchhhhhhHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHhceecCCCCCee
Confidence 12355544431 25789999999888889999999986566766665555555556666665545566666677
Q ss_pred hhccccccc
Q 008699 414 YRYKTEEYS 422 (557)
Q Consensus 414 ~r~~~e~y~ 422 (557)
|+|..++||
T Consensus 285 yAyEVDG~G 293 (434)
T COG3538 285 YAYEVDGLG 293 (434)
T ss_pred EEEEecCCC
Confidence 777766665
No 26
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=96.67 E-value=0.38 Score=52.39 Aligned_cols=183 Identities=18% Similarity=0.102 Sum_probs=96.9
Q ss_pred ceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHH---------------HHHHHHhhhhhhhhcCCCCCCC
Q 008699 184 IGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRN---------------FILHTLQLQSWEKTMDCHSPGQ 248 (557)
Q Consensus 184 ~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~---------------~L~~~~~Lqs~~~~~d~~~~~~ 248 (557)
-|.+.|+.+. ..+.|.=+|.||+.+++-+++..|..+.++. +|....++|.... +. +.
T Consensus 23 ~GaiiAsps~--s~pdY~y~W~RD~a~~~~al~~~g~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~---~~--~~ 95 (448)
T PF00723_consen 23 TGAIIASPST--SLPDYRYCWVRDAAYTAYALWALGYRDEARAFFYELEQSLVKLMRGYLQPMYRQQGKVN---PS--GE 95 (448)
T ss_dssp TT-B-S-SSB--SSSBTCSEEHHHHHHHHHHHHHHT-H--HHHHHTTT-HHHHHHHHHHHHHHHHHHTS-B---TT--B-
T ss_pred CCeEEeeccc--CCCCCceeecccHHHHHHHHHHhhhhHHHHHHHhhhhHhhhhhhhhhhhhhhhhcCccC---CC--cc
Confidence 5666654322 3469999999999999999987664444433 3333333333211 01 10
Q ss_pred CCCCCcceeecccCCCCCCCcccccCCCCCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHH--HHHHHHH
Q 008699 249 GLMPASFKVRTVPLDGDDSATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTG--IKMILKL 326 (557)
Q Consensus 249 GliP~sfKv~h~~~r~~~~~~e~~l~ad~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~--ik~IL~~ 326 (557)
-..|. -+|+|--. . +. .+-.|..+ +.---.|.+=.+++++.+|.+. | ..+. .++.+. |+..+++
T Consensus 96 ~~~~~---~L~~~~~~--~-~~---~~~~g~~~-w~~~Q~D~~gl~l~~l~~~~~~-g-~~~~--~~~~~~~~I~~~~~y 161 (448)
T PF00723_consen 96 FQSPE---GLHEPGYN--V-SG---PVRVGNPA-WGRPQNDGPGLRLLALWQYIDS-G-LQII--YTYWEVSFIKNDLDY 161 (448)
T ss_dssp TTTTG---GGGTTEEE--T-TS---EBTTS-B--ES--BTHHHHHHHHHHHHHHHT-T-HHHH--HTHHHHHTHHHHHHH
T ss_pred ccCcc---ccccceec--C-CC---CcccCchh-ccCcCCCchHHHHHHHHHHHHc-C-CCcc--cccchhHHHHHHHHH
Confidence 01110 01221000 0 00 00011111 1113689999999999999432 3 4442 345555 8888888
Q ss_pred HHhCCCCCCCcceecCCCcccccccCCCCCcee--ehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 008699 327 CLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLE--IQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHI 399 (557)
Q Consensus 327 ~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVE--IQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f 399 (557)
+.... . .++-..|= -|.|..-. ..+--+.||..+..+++. .++....+.+.+.+..++..+
T Consensus 162 i~~~w--~-----~pd~dlWE----e~~g~~~f~~S~~~~~~AL~~a~~~a~~-~g~~~~~~~~~~~a~~i~~~l 224 (448)
T PF00723_consen 162 IERNW--R-----EPDFDLWE----ERNGIHFFTASSAMQWAALLRAANLAEL-FGDPGDAERWRETADEIRERL 224 (448)
T ss_dssp HHHHT--T-----SBEE-TTS----S-EEEEHH--HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHc--C-----CcCCcccc----ccCCCCccchhHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHh
Confidence 87521 0 12222333 23454433 667778999999999987 566667777778888888888
No 27
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.011 Score=66.33 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=113.6
Q ss_pred CCcceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCC-CCCcceeec
Q 008699 181 GSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGL-MPASFKVRT 259 (557)
Q Consensus 181 ~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~Gl-iP~sfKv~h 259 (557)
-+|+|.+|.-+-. ...||-.--|-=..--.+++|+. -||+++++++.+++....+.. .++. -|. +|-.
T Consensus 339 ld~~G~FaV~E~~--~~~~y~~tig~~~~~Gsfgllll-fPeLek~~~~~f~~~i~~eD~--~~~v-~gy~~~~~----- 407 (721)
T COG4354 339 LDKDGRFAVYECP--FYTWYESTIGDVRLYGSFGLLLL-FPELEKSVMRAFARAIPKEDT--EYRV-IGYAFPEA----- 407 (721)
T ss_pred ccCCCceEEEecc--cccchhcccceeEecCCchHHHH-hHHHHHHHHHHHHHhccccCC--ceee-eeeccchh-----
Confidence 3679999975311 12344431111111115565544 799999999988876554331 1111 011 1100
Q ss_pred ccCCCCCCCcccccCCCCC--CCccCc--c-CCCCcHHH------HHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHH
Q 008699 260 VPLDGDDSATEEVLDPDFG--EAAIGR--V-APVDSGLW------WIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCL 328 (557)
Q Consensus 260 ~~~r~~~~~~e~~l~ad~G--e~aig~--y-~sVDAtLW------fIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~ 328 (557)
.|..+. ..--|.| ++++.. | ..-|--+| |+.+++++.+.|+|.+|+ .++.+.|..+++|..
T Consensus 408 --~~k~~~----~tphDLg~~ehs~e~~iy~t~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL--~e~y~~iv~~iD~~~ 479 (721)
T COG4354 408 --ERKKDP----ATPHDLGPNEHSIEKPIYGTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFL--KEVYPVIVEAIDWLK 479 (721)
T ss_pred --hccCCC----CCCcccCccccchhcccccccCCchhhhhcCCcEEeeehhhhhhcccHHHH--HHHHHHHHHHHHHHH
Confidence 000000 0011233 333321 1 22233344 789999999999999997 589999999999995
Q ss_pred hCCCCCCCcceecCCCcccccc---cCCCCCceeehHHHHHHHHHHHHhhCCCCCCH----------HHHHHHHHHHHHH
Q 008699 329 ADGFDMFPTLLVTDGSCMIDRR---MGIHGHPLEIQALFYSALLCAREMLAPEDGSA----------DLIRALNNRLVAL 395 (557)
Q Consensus 329 ~~~f~~~p~lLv~dG~~wmD~r---~pR~G~PVEIQALwYnALr~a~~L~~~~~~~~----------~~~~~l~~ra~~L 395 (557)
.- +...+++ |+-.-=||.. .-..|+--+.-.||-.||-.+.+|++.+...+ .....+...+...
T Consensus 480 ~~--d~d~Dgi-P~~~g~~d~~fDa~~i~G~ssy~~sl~iaal~A~l~is~~l~~~~~~~a~~e~~~~~~~~y~~~L~~~ 556 (721)
T COG4354 480 RF--DQDNDGI-PENSGAMDNTFDATRIQGHSSYCGSLFIAALIAALEISKYLLDNAQLEALNEASKNYVDFYNTWLKEA 556 (721)
T ss_pred hh--cccCCCC-CcccCCcccccccceeechhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 31 1222222 2211112222 23478888999999999999999988644331 2334455666667
Q ss_pred HHHHHhhccc
Q 008699 396 SFHIREYYWI 405 (557)
Q Consensus 396 ~~~f~~~FW~ 405 (557)
++.|+++.|.
T Consensus 557 ~e~~~~~LwN 566 (721)
T COG4354 557 REAFNKYLWN 566 (721)
T ss_pred HHHHHHhccC
Confidence 7778877774
No 28
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.4 Score=54.63 Aligned_cols=171 Identities=14% Similarity=0.147 Sum_probs=110.7
Q ss_pred cCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccCCC
Q 008699 197 VLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLDPD 276 (557)
Q Consensus 197 ~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ad 276 (557)
.-.|.+.+.=|+.--..|+|.++..+.+|+.+..+..+ || ..|.|||.=.+
T Consensus 180 GgRF~E~YyWDsywii~GLl~S~m~~takGmieNf~~l------V~----~yG~ipNg~R~------------------- 230 (600)
T KOG0602|consen 180 GGRFRELYYWDSYWIIKGLLASQMFDTAKGMIENFISL------VD----TYGFIPNGGRV------------------- 230 (600)
T ss_pred CCceeeeecccHHHHHHhHHhhcccHHHHHHHHHHHHH------HH----hcCcccCCCee-------------------
Confidence 35899999999999999999999999999999665443 33 45889984321
Q ss_pred CCCCccCccCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHH----hCCCCCCCcc--e---ecCC----
Q 008699 277 FGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCL----ADGFDMFPTL--L---VTDG---- 343 (557)
Q Consensus 277 ~Ge~aig~y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~----~~~f~~~p~l--L---v~dG---- 343 (557)
+|-+===.+.+..-+..|++.|+|.+|+ .++|..++.=+. ....+.-..+ + .+.+
T Consensus 231 -------YYl~RSQPPllt~Mv~~~y~~t~~~~~~-----~~~l~tl~kEy~fw~~~~~~~~~~~~~~l~~y~~~~~~pr 298 (600)
T KOG0602|consen 231 -------YYLNRSQPPLLTGMVYEYYEATNDEQFL-----KRALPTLIKEYEFWTNNRTEDVKDEGKVLSRYRVMGSGPR 298 (600)
T ss_pred -------eeeccCCCchhhhhHHHhhhccCcHHHH-----HHHHHHHhhheecccCCCccccccCCceeEEEeccCCCCC
Confidence 1111112234677789999999999995 333333332222 1000000000 0 0000
Q ss_pred ---------------------Ccccccc-------------cCCCC----------CceeehHHHHHHHHHHHHhhCCCC
Q 008699 344 ---------------------SCMIDRR-------------MGIHG----------HPLEIQALFYSALLCAREMLAPED 379 (557)
Q Consensus 344 ---------------------~~wmD~r-------------~pR~G----------~PVEIQALwYnALr~a~~L~~~~~ 379 (557)
..|-|-. +...| .||-.|+|.++.++.++.+... .
T Consensus 299 PEsy~~d~e~~e~~~t~~~~~~~~~~l~~~aesg~DfSsrw~~~~~t~~~~~t~~~vpvDLN~~~~~~~~i~~y~~~~-~ 377 (600)
T KOG0602|consen 299 PESYREDFETAEHLKTEKEKQQLYQDLAAAAESGWDFSSRWFAVNGTLSSIGTTDLVPVDLNLLYKWNADIMKYFYVV-D 377 (600)
T ss_pred CcchHHHHHHHhcccchHHHHHHHHHHhhcCcccchhHHHhhccCCcccccccccccccchHHHHHhhHHHHhhhccc-C
Confidence 0011110 11122 6799999999999999999887 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccccccc
Q 008699 380 GSADLIRALNNRLVALSFHIREYYWIDLRK 409 (557)
Q Consensus 380 ~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~ 409 (557)
++.+.+....++.++++..|++.+|.|...
T Consensus 378 Gd~~~s~~~~~k~~~r~~~i~~vlWde~~g 407 (600)
T KOG0602|consen 378 GDPKDSAQFEKKSEQRRAAIQEVLWDEEDG 407 (600)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 777888889999999999999999976544
No 29
>KOG2161 consensus Glucosidase I [Carbohydrate transport and metabolism]
Probab=94.10 E-value=1.9 Score=50.29 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=97.5
Q ss_pred CcccccccCCCCCc------eeehHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhcc
Q 008699 344 SCMIDRRMGIHGHP------LEIQALFYSALLCAREMLAPEDGSADLIRALNNRLVALSFHIREYYWIDLRKLNEIYRYK 417 (557)
Q Consensus 344 ~~wmD~r~pR~G~P------VEIQALwYnALr~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW~d~~~l~~i~r~~ 417 (557)
..|||- +||.-+| |+--+.-+-|-|++.++++.+++.+.+........ +..+.+.+.-|.+..+.+ +.
T Consensus 584 ~SGlDD-yPRAs~Ps~~ElhvDl~~W~~lasrsl~~iae~lg~~~~E~~~a~~e~-~~~e~L~~~HW~ee~~~y--~D-- 657 (849)
T KOG2161|consen 584 SSGLDD-YPRASHPSVLELHVDLRCWVGLASRSLNRIAEFLGETEAEYATAITEL-ECKENLVQNHWSEEDQAY--CD-- 657 (849)
T ss_pred cccccc-cccccCchHHHHhhhhHHHHHHHHHHHHHHHHHhcchhhhhhhhhhHH-HHHHHHHHhccChhhCee--ee--
Confidence 679998 9999888 56667777788999999987655442222222222 246778888897665543 21
Q ss_pred ccccchhhh-hccCCCCCCCCcccccccCCCCceeeccccCCccccccccccc--hhhhhcC--CCCHHHHHHHHHHHHH
Q 008699 418 TEEYSYDAV-NKFNIYPDQIPPWLVEWMPNKGGYLIGNLQPAHMDFRFFSLGN--IWSIVNG--LATRDQSHAILDLMEA 492 (557)
Q Consensus 418 ~e~y~~~av-n~fni~pd~ipd~L~d~~~~~ggYl~gnv~P~~~D~R~falGN--lLAl~~g--Ll~~eqa~aVld~v~~ 492 (557)
||.+-+ ...++.|..+.. ++.+-.+-+.. -|+. -.-...+|= ++-++.. +++.++-.+++++|..
T Consensus 658 ---~g~h~~dv~~~~~p~~g~~--~r~~~r~v~~~----~p~~-e~v~~h~GYvSl~P~mlrLlp~~S~rL~~~Ldli~D 727 (849)
T KOG2161|consen 658 ---FGNHTEDVSITPEPSIGKQ--FRGLVRRVDWF----VPNL-ELVDRHIGYVSLFPFMLRLLPATSPRLTKLLDLISD 727 (849)
T ss_pred ---ccCChhhccccccCCcccc--hhhhheecccc----CCcc-eeeecccceeehhhhHHhhcCCCchHHHHHHHHhcC
Confidence 222211 133444433311 00000000000 0111 000001111 1111122 2788888999999987
Q ss_pred hhhhhhccCCccccCCCCCCCCceee-eCCCCCCCCCccccCCcchhhhHHHHHHHHHh
Q 008699 493 KWADLVADMPLKICYPALEGQEWQII-TGSDPKNTPWSYHNAGSWPTLLWQVSHGSIVG 550 (557)
Q Consensus 493 ~~~eLltp~pLRsl~P~i~d~~Wr~~-t~gd~knrp~SYHNGgvWPwLLg~y~~A~lk~ 550 (557)
. .+|.+|||||+|+- .++=|.-+ ++.|| +|-.|.||== +-.++..+|+.
T Consensus 728 ~-~~lwSpYGlrSLS~--~s~yym~~Nte~d~-----pYWRGpIW~N-~NYLiLsaL~~ 777 (849)
T KOG2161|consen 728 E-NELWSPYGLRSLSR--SSPYYMKRNTEHDP-----PYWRGPIWMN-VNYLILSALRH 777 (849)
T ss_pred c-ccccCcchhhhhhh--cCCccccccCCCCC-----cccccceeee-hHHHHHHHHHH
Confidence 4 59999999999994 44444322 23333 7888999843 33444444544
No 30
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=83.94 E-value=3.8 Score=47.82 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=68.9
Q ss_pred HHHhCChhhHhhhhHHHHHHHHHHHHHhCCCCCCCccee-cCCCcccccccC---CCCCceeehHHHHHHHHHHHHhhCC
Q 008699 302 GKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLV-TDGSCMIDRRMG---IHGHPLEIQALFYSALLCAREMLAP 377 (557)
Q Consensus 302 ~k~TGD~sf~~~~e~~~~ik~IL~~~~~~~f~~~p~lLv-~dG~~wmD~r~p---R~G~PVEIQALwYnALr~a~~L~~~ 377 (557)
+..|||..|+ ..+.+....|++++.. ||...+|++ |+|- .|-.+. ..|---+--.||..||+.|.+||..
T Consensus 570 ~~~tgd~~fl--k~~wpsv~~ime~l~~--fDKD~DGmIEN~Gf--pDQTYD~W~~tGvSAYCGgLWlAALqa~~amA~~ 643 (879)
T KOG2119|consen 570 YVATGDEKFL--KAVWPSVYAIMEYLEQ--FDKDNDGMIENEGF--PDQTYDAWSMTGVSAYCGGLWLAALQAASAMARQ 643 (879)
T ss_pred eEEeccHHHH--HHHHHHHHHHHHHHHh--hcccCCcccccCCC--CCccccceEEecchhhhhHHHHHHHHHHHHHHHH
Confidence 4468999997 5799999999988765 345555555 3441 233221 2455567789999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhccc
Q 008699 378 EDGSADLIRALNNRLVALSFHIREYYWI 405 (557)
Q Consensus 378 ~~~~~~~~~~l~~ra~~L~~~f~~~FW~ 405 (557)
.+++.......++++.-+..+.+..|.
T Consensus 644 -~g~~~~~~~f~~klekak~~ye~kLWN 670 (879)
T KOG2119|consen 644 -IGDPNTQDYFNNKLEKAKDVYEKKLWN 670 (879)
T ss_pred -hCChhHHHHHHHHHHHHHHHHHHhhcC
Confidence 455555566667777667778888885
No 31
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=35.20 E-value=30 Score=36.18 Aligned_cols=113 Identities=27% Similarity=0.370 Sum_probs=64.8
Q ss_pred cccccccccccccccc--ccCccccCCCCceeeeccccccccccCCCCccccchhhhhhhhhhhccccCCCCCccccccc
Q 008699 80 VNRLQLLSCKCQQAES--VSGLTAEDGNGTWFVDSAKKLNLKSVANTPNILEFQDVQQFEQEKKSFTSNGAAGTTIDSVS 157 (557)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (557)
.+.|--++|.||-||. ..|+. |++--|-.|+....-. .+.|-+-.. +.
T Consensus 177 gdTLyELR~slqLAelER~GGiS------------------------phiSPf~qvrDiG~LL---~rAGF~m~t---vD 226 (325)
T KOG2940|consen 177 GDTLYELRCSLQLAELEREGGIS------------------------PHISPFTQVRDIGNLL---TRAGFSMLT---VD 226 (325)
T ss_pred cccHHHHHHHhhHHHHHhccCCC------------------------CCcChhhhhhhhhhHH---hhcCcccce---ec
Confidence 4556678999998873 44444 7888888776554322 222322222 22
Q ss_pred ccchHHHHHHHHHHHHHhhcccCCCcceEEeecCCCCCccCCCCccchhhhHHHHHHHHccCCHHHHHHHHHHHHhhhhh
Q 008699 158 KATVDCLEDEAWNLLRDSMVYYCGSPIGTIAANDPTSSNVLNYDQVFIRDFIPSGIAFLLKGEYDIVRNFILHTLQLQSW 237 (557)
Q Consensus 158 ~~~~~~~~~~A~~lLr~~~~~~~~~p~GtiAa~d~~~a~~~nY~~vfgRDt~ISllglL~~G~peiar~~L~~~~~Lqs~ 237 (557)
...+.--|-.+.++++.+ ++ -|.--| +.|=...--||++.++-+. +|++
T Consensus 227 tDEi~v~Yp~mfeLm~dL----q~--MgEsn~-------~~~Rn~~l~Ret~vAaaAi------------------Y~sm 275 (325)
T KOG2940|consen 227 TDEIVVGYPRMFELMEDL----QG--MGESNA-------ALNRNAILNRETMVAAAAI------------------YQSM 275 (325)
T ss_pred ccceeecCchHHHHHHHH----Hh--hcccch-------hhccCccccHHHHHHHHHH------------------HHHH
Confidence 223333455566665551 11 333222 2455567779998887653 2443
Q ss_pred hhhcCCCCCCCCCCCCcceeec
Q 008699 238 EKTMDCHSPGQGLMPASFKVRT 259 (557)
Q Consensus 238 ~~~~d~~~~~~GliP~sfKv~h 259 (557)
|..+.|-+|+.|+|..
T Consensus 276 ------ya~e~~~iPATfqiiy 291 (325)
T KOG2940|consen 276 ------YATEDGTIPATFQIIY 291 (325)
T ss_pred ------hcCCCCCcceeEEEEE
Confidence 4457889999999873
No 32
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=26.54 E-value=1.4e+02 Score=32.58 Aligned_cols=154 Identities=17% Similarity=0.091 Sum_probs=73.6
Q ss_pred CCCCccchhhh-HHHHHHHHccCCHHHHHHHHHHHH-hhhh-hhhhcCCCCCCCCCCCCcceeecccCCCCCCCcccccC
Q 008699 198 LNYDQVFIRDF-IPSGIAFLLKGEYDIVRNFILHTL-QLQS-WEKTMDCHSPGQGLMPASFKVRTVPLDGDDSATEEVLD 274 (557)
Q Consensus 198 ~nY~~vfgRDt-~ISllglL~~G~peiar~~L~~~~-~Lqs-~~~~~d~~~~~~GliP~sfKv~h~~~r~~~~~~e~~l~ 274 (557)
..|..-.==|+ +-.+|.++.+ +||+||++|..=. +|.. .++. ...|.-=+.| |-+-
T Consensus 28 e~Y~Gh~FWDtE~~~~P~~~~~-~Pe~Ar~lL~YR~~~L~~Ar~~A-----~~~g~~GA~y-----PWeS---------- 86 (370)
T PF03632_consen 28 EGYKGHVFWDTEIFMLPFFLLT-HPEAARSLLNYRYRTLPQARENA-----REYGYKGAMY-----PWES---------- 86 (370)
T ss_dssp STTTTSB-THHHHCHHHHHHHS--HHHHHHHHHHHHTTHHHHHHHH-----HCTT--S---------SSB----------
T ss_pred CCcCCeeeecchHHhcchHhhc-CHHHHHHHHHHHHHHHHHHHHHH-----HHcCCCccee-----eccc----------
Confidence 45766333475 6678888878 9999999886421 1111 1111 1223222222 1110
Q ss_pred CCCCCCccC--c--cCCCCcHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHHh-CCCCCCCcceecCCCccccc
Q 008699 275 PDFGEAAIG--R--VAPVDSGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLA-DGFDMFPTLLVTDGSCMIDR 349 (557)
Q Consensus 275 ad~Ge~aig--~--y~sVDAtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~~-~~f~~~p~lLv~dG~~wmD~ 349 (557)
+.+|+..-+ . -.-.=.+--...++++|+..|||.+|++ ..-.+.|.++-++..+ -.++.. .|..-++.
T Consensus 87 ~~~G~E~t~~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~-~~g~eil~etArfw~sr~~~~~~------~g~y~i~~ 159 (370)
T PF03632_consen 87 ARTGEECTGPWPAGDYEIHINADIAYAIWQYYQATGDEEFLR-EYGAEILFETARFWASRVEYNED------TGRYEIRN 159 (370)
T ss_dssp SS-SSB----HHHHTT-THHHHHHHHHHHHHHHHH---TTTT-THHHHHHHHHHHHHHHH-EEETT------TTEEE--S
T ss_pred ccCccccCCCCCchHhhhcchHHHHHHHHHHHHhCCcHHHHH-ccCHHHHHHHHHHHHHheEEcCC------CCeEEecc
Confidence 112211101 0 1122334456789999999999999984 3345666666555542 111111 02222222
Q ss_pred ccCC---CC---CceeehHHHHHHHHHHHHhhCCCC
Q 008699 350 RMGI---HG---HPLEIQALFYSALLCAREMLAPED 379 (557)
Q Consensus 350 r~pR---~G---~PVEIQALwYnALr~a~~L~~~~~ 379 (557)
-||= +. --.+.|+..=..|+.|.++++.++
T Consensus 160 V~GPDEY~~~V~NnayTN~ma~~~L~~A~~~~~~~~ 195 (370)
T PF03632_consen 160 VTGPDEYHENVDNNAYTNAMAKWNLRLAAEAAERLG 195 (370)
T ss_dssp B--SSTTS-SBS--HHHHHHHHHHHHHHHHHHTTS-
T ss_pred cCchhcccCCCCCcHHHHHHHHHHHHHHHHHHHHCc
Confidence 1210 01 237899999999999999998753
No 33
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=21.60 E-value=5.6e+02 Score=26.74 Aligned_cols=99 Identities=11% Similarity=-0.051 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHHHHhCChhhHhhhhHHHHHHHHHHHHHhCCCCCCCcceecCCCcccccccCCCCCceeehHHHHHHHH
Q 008699 290 SGLWWIILLRAYGKCSGDLLVQERIDVQTGIKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALL 369 (557)
Q Consensus 290 AtLWfIial~~Y~k~TGD~sf~~~~e~~~~ik~IL~~~~~~~f~~~p~lLv~dG~~wmD~r~pR~G~PVEIQALwYnALr 369 (557)
+.-=.|+++..+++.+||.+.++ ....++.-+.+.+....++.+...+ + .|.+....++-++.+|+.-.|+.
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~--~A~~~~~fl~~~~~d~~~Gg~~~~~-~-----~~g~~~~~~~~l~~~a~~l~ala 125 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLE--AAEHGLEYLDRHGRDPDHGGWYFAL-D-----QDGRPVDATKDLYSHAFALLAAA 125 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHH--HHHHHHHHHHHhCcCCCCCCEEEEE-c-----CCCCCcccccchHHHHHHHHHHH
Confidence 33347888899999999887642 2333444443333221111110000 1 02212223344889998888887
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Q 008699 370 CAREMLAPEDGSADLIRALNNRLVALSFHIREYYW 404 (557)
Q Consensus 370 ~a~~L~~~~~~~~~~~~~l~~ra~~L~~~f~~~FW 404 (557)
.+.+.. ++++.. +++..+-..+.++||
T Consensus 126 ~~~~at----~d~~~l----~~A~~~~~~l~~~~~ 152 (384)
T cd00249 126 QAAKVG----GDPEAR----ALAEETIDLLERRFW 152 (384)
T ss_pred HHHHhc----CCHHHH----HHHHHHHHHHHHHhc
Confidence 666654 233332 445555666777787
Done!