Citrus Sinensis ID: 008700
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9P4 | 541 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.921 | 0.948 | 0.701 | 0.0 | |
| P52410 | 473 | 3-oxoacyl-[acyl-carrier-p | no | no | 0.698 | 0.822 | 0.571 | 1e-132 | |
| P23902 | 462 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.680 | 0.820 | 0.562 | 1e-125 | |
| Q9KQH9 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.676 | 0.910 | 0.462 | 1e-93 | |
| Q83E37 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.666 | 0.896 | 0.470 | 1e-91 | |
| P55338 | 415 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.676 | 0.908 | 0.459 | 3e-90 | |
| P73283 | 416 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.678 | 0.908 | 0.449 | 3e-88 | |
| O34340 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.675 | 0.910 | 0.442 | 2e-84 | |
| P0AAI8 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.667 | 0.900 | 0.448 | 8e-80 | |
| P0AAI5 | 413 | 3-oxoacyl-[acyl-carrier-p | N/A | no | 0.667 | 0.900 | 0.448 | 8e-80 |
| >sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/553 (70%), Positives = 439/553 (79%), Gaps = 40/553 (7%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
+ +S S+ SPLCTW VAACMS + G D Q ++ + +R LS KC
Sbjct: 2 VGASSSYASPLCTWFVAACMSVSHGGGDSRQAVALQSGGRSRRRRQLS---------KCS 52
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
V SGS+ SIQ+L+ SCL F PC Y + +N SS FGSN
Sbjct: 53 VA------------SGSA-SIQALVTSCLDFGPCTHYNN---------NNALSSLFGSN- 89
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
+ +LNR QRRL NR SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH
Sbjct: 90 -SVSLNRNQRRL--NRAASSGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGH 145
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+P FY NLL+G SGIS+IE FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLL
Sbjct: 146 DPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLL 205
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGG+T++VM E DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPF
Sbjct: 206 TAGKKALADGGVTDEVMAEFDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPF 265
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IP
Sbjct: 266 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIP 325
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 326 IGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAE 385
Query: 421 FRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQ 480
F GGSFT DAYHMTEPHPDG GVILCIE+ALA +G+S+E +NYINAHATST AGDIKEYQ
Sbjct: 386 FLGGSFTCDAYHMTEPHPDGAGVILCIERALASAGISKEQINYINAHATSTHAGDIKEYQ 445
Query: 481 ALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAI 540
AL HCFGQN L+VNSTKSMIGHLLGAAGAVEA+A VQAIRTGW+HPNINLENPD+ +
Sbjct: 446 ALAHCFGQNPELKVNSTKSMIGHLLGAAGAVEAVATVQAIRTGWVHPNINLENPDS--GV 503
Query: 541 DSGHECACGPKER 553
D+ + GPK+
Sbjct: 504 DT--KLLVGPKKE 514
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Essential protein that catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-16 and C-16 to unsaturated C-18 fatty acids. Confers resistance to low temperatures by maintaining chloroplast membranes integrity. Involved in the regulation of fatty acids ratios during seed metabolism. Required for embryo development, especially at the transition from the globular to the heart stage. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2 | Back alignment and function description |
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Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 223/390 (57%), Positives = 292/390 (74%), Gaps = 1/390 (0%)
Query: 154 VTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAA 213
V+ K+ +KRVV+TGMGLVS G++ D +Y LL G SGIS I+ FD + FPT+
Sbjct: 50 VSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGG 109
Query: 214 EIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
+I+ FS++G++ K +R+D + Y + AGKKAL + D +N +DK K GVL+G+G+
Sbjct: 110 QIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKAGVLVGTGM 169
Query: 274 GGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG+ VF + ++ L +++++PF +P+A TNMGSA+LA+DLG MGPNYSISTACATSN+
Sbjct: 170 GGLTVFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNY 229
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392
C AANHI RGEA++M+ GG++AA+IPIGLGGFVACRALSQRN+DP ASRPWD RDG
Sbjct: 230 CFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDG 289
Query: 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALA 452
FVMGEGAGVL++E LEHA KRGA I AE+ GG+ DA+HMT+P DG+GV CIE+ L
Sbjct: 290 FVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADGLGVSSCIERCLE 349
Query: 453 HSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVE 512
+GVS E+VNYINAHATST AGD+ E A+ F G+++N+TKSMIGH LGAAG +E
Sbjct: 350 DAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKSTSGIKINATKSMIGHCLGAAGGLE 409
Query: 513 AIAVVQAIRTGWIHPNINLENPDAVVAIDS 542
AIA V+AI TGW+HP+IN NP+ V D+
Sbjct: 410 AIATVKAINTGWLHPSINQFNPEQAVDFDT 439
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|P23902|KASC1_HORVU 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/382 (56%), Positives = 284/382 (74%), Gaps = 3/382 (0%)
Query: 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 223
+KRVV+TGMGL S G + D FY+ LL G SG+ I+ FD +SFPT+ A +I+ FS++G+
Sbjct: 47 RKRVVITGMGLASVFGSDVDTFYDRLLAGESGVGPIDRFDASSFPTRFAGQIRGFSSEGY 106
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K +R+D + Y + +GKKAL G+ D +LD + GVL+G+G+GG+ VF D
Sbjct: 107 IDGKNDRRLDDCIRYCILSGKKALESAGLGAGSDAHVKLDVGRAGVLVGTGMGGLSVFSD 166
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
++ L Y+K++PF +P+A TNMGSA+LA+D+G+MGPNYSISTACATSN+C AANH
Sbjct: 167 GVQNLIEKGYRKISPFFIPYAITNMGSALLAIDVGFMGPNYSISTACATSNYCFYAAANH 226
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RGEA++++ GG++AA+IPIGLGGFVACRALSQRN+DP A RPWD RDGFVMGEGAG
Sbjct: 227 IRRGEADIIVAGGTEAAIIPIGLGGFVACRALSQRNDDPITACRPWDKERDGFVMGEGAG 286
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
VL++E LEHA KR A I AE+ GG+ DAYHMT+P DG+GV CI +L +GV+ E+
Sbjct: 287 VLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRADGLGVSSCITMSLRDAGVAPEE 346
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAI 520
VNYINAHATST AGD+ E +A+ F +++NSTKSMIGH LGAAG +EAIA +++I
Sbjct: 347 VNYINAHATSTLAGDLAEVRAIKQVFKNPSEIKINSTKSMIGHCLGAAGGLEAIATIKSI 406
Query: 521 RTGWIHPNINLENPDAVVAIDS 542
TGW+HP IN NP+ V D+
Sbjct: 407 TTGWVHPTINQFNPEPEVDFDT 428
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 | Back alignment and function description |
|---|
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/383 (46%), Positives = 254/383 (66%), Gaps = 6/383 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+G+GAG
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+++LEE EHAK RGAKIYAE G + DAYHMT P DG G L +E A+ +GV+ E
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQ 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQ--NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518
+ Y+NAH TSTPAGD+ E + + G+ + + V+STKSM GHLLGAAG+VEAI V
Sbjct: 298 IGYVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVSSTKSMTGHLLGAAGSVEAIITVM 357
Query: 519 AIRTGWIHPNINLENPDAVVAID 541
++ + P INL+NP+ + +D
Sbjct: 358 SLVDQMVPPTINLDNPEEGLGVD 380
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q83E37|FABF_COXBU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 177/376 (47%), Positives = 243/376 (64%), Gaps = 5/376 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M+++RVV+TG+G+VSPLG++ + LL G SG+ I FD +SFPT+IAAE++ F
Sbjct: 1 MEKRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPA 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++ D F+ + + + ++A D G+ +NE + + GV IGSG+GGM
Sbjct: 61 LVLDLKSIRKTDVFVQFAMESARQAWEDSGLE---INETNAPRVGVAIGSGIGGMPWIEK 117
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL S +K++PF +P A NM S M+++ GPN SI TAC T I +AA
Sbjct: 118 NYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I +A+ M+ GG++ A P+G+GGF A RALS RN++P KASRPWD RDGFV+GEGA
Sbjct: 178 IAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAA 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+++EELEHAKKR A IYAE G + DAYHMT P P+ G C++ +L +G++ E
Sbjct: 238 CVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAEGFTTCMKNSLRDAGIAPER 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
V+YINAH TSTPA D E +A+ FG + L V+STKSM GH+LGAAGA+E + V A
Sbjct: 298 VDYINAHGTSTPAADPLEARAIKKTFGDHAYKLAVSSTKSMTGHMLGAAGALETVISVLA 357
Query: 520 IRTGWIHPNINLENPD 535
IR P INLENPD
Sbjct: 358 IRDNTAPPTINLENPD 373
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/383 (45%), Positives = 248/383 (64%), Gaps = 6/383 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LLEG SGI IE FD T+F T+ A +K F
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNIEHFDATNFSTRFAGLVKDFDCT 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ + E + ++ GV IGSG+GG+ +
Sbjct: 61 EYMSKKDARKMDLFIQYGIAAGIQALDDSGLE---ITEENAARVGVAIGSGIGGLDLIEA 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHSALVEKGPRKVSPFFVPSTIVNMVAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD RDGFV+G+GAG
Sbjct: 178 IAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKGRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
V++LEE EHAK RGAKIYAE G + DAYHMT P DG G L +E A+ + ++
Sbjct: 238 VMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDANITGTQ 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQ--NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518
V Y+NAH TSTPAGD+ E + + G+ ++ + V+STKSM GHLLGAAG+VEAI V
Sbjct: 298 VGYVNAHGTSTPAGDVAEIKGVKRALGEEGSKQVLVSSTKSMTGHLLGAAGSVEAIITVL 357
Query: 519 AIRTGWIHPNINLENPDAVVAID 541
++ + P INL++P+ + ID
Sbjct: 358 SLVDQIVPPTINLDDPEEGLDID 380
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P73283|FABF_SYNY3 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 172/383 (44%), Positives = 240/383 (62%), Gaps = 5/383 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
++++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 3 NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
++ K +KRMD+F + + A ++A+ D + V+NEL+ + GVLIG+G+GG+KV
Sbjct: 63 TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 281 DAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFR 179
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+
Sbjct: 180 LVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS 239
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459
G+L+LEELE A RGAKIY E G + T DAYH+T P PDG G I AL SG+ E
Sbjct: 240 GILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPE 299
Query: 460 DVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518
V+YINAH TSTPA D+ E +A+ G + + V+STKSM GHLLG +G +EA+A V
Sbjct: 300 MVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVM 359
Query: 519 AIRTGWIHPNINLENPDAVVAID 541
AI + P INLENPD +D
Sbjct: 360 AIAEDKVPPTINLENPDPECDLD 382
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/382 (44%), Positives = 242/382 (63%), Gaps = 6/382 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M +KRVVVTG+G +SPLG++ D +NN + GVSGI I D +P K+AAE+K F+ +
Sbjct: 1 MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD+F Y + A K A+ D + ++ +E+ + GV +GSG+GG++
Sbjct: 61 DYMDKKEARKMDRFTQYAVVAAKMAVEDADL--NITDEI-APRVGVWVGSGIGGLETLES 117
Query: 282 AIEA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
E L ++++PF VP +M + +++ LG G N TACAT I +A
Sbjct: 118 QFEIFLTKGPRRVSPFFVPMMIPDMATGQISIALGAKGVNSCTVTACATGTNSIGDAFKV 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG+A+VM+ GG++A + + GF A +ALS N DP ASRP+D NRDGFVMGEGAG
Sbjct: 178 IQRGDADVMVTGGTEAPLTRMSFAGFSANKALST-NPDPKTASRPFDKNRDGFVMGEGAG 236
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+++LEELEHA RGAKIY E G T DAYH+T P DG G +++A+ +G++ E+
Sbjct: 237 IIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEE 296
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
++YINAH TST D E A+ FG++ L V+STKSM GHLLGAAG +EAI + A
Sbjct: 297 IDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILA 356
Query: 520 IRTGWIHPNINLENPDAVVAID 541
I+ G I P IN++ PD +D
Sbjct: 357 IKEGVIPPTINIQTPDEECDLD 378
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P0AAI8|FABF_SHIFL 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 237/375 (63%), Gaps = 3/375 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 119 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+
Sbjct: 179 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 238
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
L+LEE EHAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 239 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 298
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLGAAGAVEAIAVVQAI 520
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLLGAAGAVE+I + A+
Sbjct: 299 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 358
Query: 521 RTGWIHPNINLENPD 535
R + P INL+NPD
Sbjct: 359 RDQAVPPTINLDNPD 373
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Shigella flexneri (taxid: 623) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P0AAI5|FABF_ECOLI 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 168/375 (44%), Positives = 237/375 (63%), Gaps = 3/375 (0%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 119 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+
Sbjct: 179 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 238
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
L+LEE EHAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 239 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 298
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLGAAGAVEAIAVVQAI 520
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLLGAAGAVE+I + A+
Sbjct: 299 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 358
Query: 521 RTGWIHPNINLENPD 535
R + P INL+NPD
Sbjct: 359 RDQAVPPTINLDNPD 373
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| 300507129 | 576 | KASII [Gossypium hirsutum] | 0.978 | 0.946 | 0.763 | 0.0 | |
| 225444641 | 555 | PREDICTED: 3-oxoacyl-[acyl-carrier-prote | 0.924 | 0.927 | 0.758 | 0.0 | |
| 346995771 | 573 | beta-ketoacyl-ACP synthase II [Jatropha | 0.922 | 0.897 | 0.750 | 0.0 | |
| 255550355 | 554 | 46 kDa ketoavyl-ACP synthase [Ricinus co | 0.947 | 0.953 | 0.725 | 0.0 | |
| 210110425 | 548 | beta-ketoacyl-ACP synthase II-1 [Arachis | 0.904 | 0.919 | 0.743 | 0.0 | |
| 1698690 | 540 | beta-ketoacyl-ACP synthase II [Cuphea wr | 0.899 | 0.927 | 0.747 | 0.0 | |
| 3800747 | 546 | 3-ketoacyl-ACP synthase [Cuphea avigera | 0.903 | 0.921 | 0.754 | 0.0 | |
| 297738522 | 517 | unnamed protein product [Vitis vinifera] | 0.859 | 0.926 | 0.733 | 0.0 | |
| 297742964 | 546 | unnamed protein product [Vitis vinifera] | 0.892 | 0.910 | 0.734 | 0.0 | |
| 359482462 | 600 | PREDICTED: 3-oxoacyl-[acyl-carrier-prote | 0.922 | 0.856 | 0.701 | 0.0 |
| >gi|300507129|gb|ADK23940.1| KASII [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/558 (76%), Positives = 462/558 (82%), Gaps = 13/558 (2%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRK-LSAKC 59
M +S S SPLCTWLVAACMS T G P ++ R G A RRK L ++C
Sbjct: 1 MMASSSLASPLCTWLVAACMSVTYGKDQSRSPLFNSSASASSNRLGRWARNRRKALLSQC 60
Query: 60 GVGGEVVNGS--LVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNG-FSSFF 116
GG N L+SSF GS+ IQ LMASCL FEPC++YYSS + FFG NG FSSFF
Sbjct: 61 CGGGATPNKDVGLISSFRGST--IQGLMASCLAFEPCDDYYSSKNG-SFFGQNGSFSSFF 117
Query: 117 GSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVS 176
GS N NR Q+RL R SG+AMA+AVQP E+TTKKKP KQ+RVVVTGMG+V+
Sbjct: 118 GSKNVPFNKNREQKRLN-RRAHHSGQAMAIAVQPTREITTKKKPPTKQRRVVVTGMGVVT 176
Query: 177 PLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFM 236
PLGHEPDVFYNNLLEGVSGISEIETFDC FPT+IA EIKSFSTDGWVAPKLSKRMDKFM
Sbjct: 177 PLGHEPDVFYNNLLEGVSGISEIETFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFM 236
Query: 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPF 296
LY LTAGKKAL DGG+ EDVM ELDK+KCG LIGS +GGMKVF DAIEALRISY+KMNPF
Sbjct: 237 LYSLTAGKKALQDGGVNEDVMEELDKTKCGALIGSAMGGMKVFNDAIEALRISYRKMNPF 296
Query: 297 CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDA
Sbjct: 297 CVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDA 356
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
A+IPIGLGGFVACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAK+RGA
Sbjct: 357 AIIPIGLGGFVACRALSQRNNDPTKASRPWDANRDGFVMGEGAGVLLLEELEHAKRRGAT 416
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDI 476
IYAEF GGSFT DAYHMTEPHPDGVGVILCIE+ALAH+GVSR D+NYINA ATSTP GDI
Sbjct: 417 IYAEFLGGSFTCDAYHMTEPHPDGVGVILCIEEALAHAGVSRGDINYINARATSTPTGDI 476
Query: 477 KEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDA 536
KEYQAL+HCFG+N LRVNSTKSMIGHLLGA+GAVEA A +QAIRTGW+HPNINLENPD
Sbjct: 477 KEYQALLHCFGENPELRVNSTKSMIGHLLGASGAVEAAATIQAIRTGWVHPNINLENPD- 535
Query: 537 VVAIDSGHECACGP-KER 553
V +D+ GP KER
Sbjct: 536 -VGVDT--SVLVGPNKER 550
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444641|ref|XP_002276214.1| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/535 (75%), Positives = 452/535 (84%), Gaps = 20/535 (3%)
Query: 9 SPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNG 68
SPLCTWLVAACMS T + +P S+++ R G +RR++ A+C + G
Sbjct: 4 SPLCTWLVAACMSVTADNEFAPKP-SMVQCSKRLSRWG----KRRRVLAQCS---DFARG 55
Query: 69 SLVSSFSGSSHSIQSLMASCLPFEPCNEYYSS--VSSLGFFGDNGFSSFFGSNNSTATLN 126
+SS SIQ L++SCL FEPC++Y SS + FFGDN SS FGS + LN
Sbjct: 56 GSISS------SIQGLVSSCLAFEPCDQYCSSKGLPYSAFFGDNALSSVFGSK--SLPLN 107
Query: 127 RRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFY 186
RRQRR NR + SGE MAVAVQP +EVTTKKKP +Q+RVVVTGMG++SP+GHEPD FY
Sbjct: 108 RRQRRT--NRGSHSGETMAVAVQPAKEVTTKKKPLTEQRRVVVTGMGVMSPIGHEPDSFY 165
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKA 246
NNLLEGVSGISEIE+FDC+ FPT+IA EIKSFSTDGW+APKLSKRMDKFMLY+LTAGKKA
Sbjct: 166 NNLLEGVSGISEIESFDCSHFPTRIAGEIKSFSTDGWIAPKLSKRMDKFMLYMLTAGKKA 225
Query: 247 LADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306
LADGGITEDV +ELDKS+CGVLIGS +GG+KVF DAIEALR+SY+KMNPFCVPFATTNMG
Sbjct: 226 LADGGITEDVTDELDKSRCGVLIGSAMGGIKVFNDAIEALRVSYRKMNPFCVPFATTNMG 285
Query: 307 SAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGF 366
SAMLAMDLGWMGPNYSISTACATSNFCILNA+NHIIRGEA++MLCGGSDAA+IPIGLGGF
Sbjct: 286 SAMLAMDLGWMGPNYSISTACATSNFCILNASNHIIRGEADMMLCGGSDAAIIPIGLGGF 345
Query: 367 VACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF 426
VACRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF GGSF
Sbjct: 346 VACRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFLGGSF 405
Query: 427 TSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCF 486
T DAYHMTEPHPDG GVILCIE ALA SGVSREDVNYINAHATST AGD +EYQAL+ CF
Sbjct: 406 TCDAYHMTEPHPDGAGVILCIESALARSGVSREDVNYINAHATSTLAGDFREYQALVRCF 465
Query: 487 GQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
GQN L+VNSTKSMIGHLLGAAGAVEAIA +QAIRTGW+HPNINLE+P+ V D
Sbjct: 466 GQNPELKVNSTKSMIGHLLGAAGAVEAIATIQAIRTGWVHPNINLESPEEGVDTD 520
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|346995771|gb|ABJ90469.2| beta-ketoacyl-ACP synthase II [Jatropha curcas] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/553 (75%), Positives = 455/553 (82%), Gaps = 39/553 (7%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRD---PH-----QPPSVLRRYTNNKREGLSAARR 52
M S SF SPLCTWLVAACMS TC + PH QP + L R+ +R+ L A
Sbjct: 1 MMGSASFASPLCTWLVAACMSVTCAKENRTAPHAFHSSQPSNRLSRWAR-RRKTLHAQYN 59
Query: 53 RKLSAKCGV----------GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVS 102
S E ++ SLVS+ GSS Q LM+SCL FEPC++YYSS
Sbjct: 60 SDSSNSIAAGGGGGGGGGYSTEFLSNSLVSTLCGSS--FQGLMSSCLAFEPCSQYYSS-- 115
Query: 103 SLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHM 162
NG F S N LNR+QRRL NR+ SGEAMA+AVQP++EV TKKKP
Sbjct: 116 -------NGL---FRSRN----LNRKQRRL--NRLALSGEAMAIAVQPEKEVATKKKPAT 159
Query: 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
KQ+RVVVTGMG+VSPLGHEPDVFYNNLLEGVSGIS+IE F+C FPT+IA EIKSFSTDG
Sbjct: 160 KQRRVVVTGMGVVSPLGHEPDVFYNNLLEGVSGISQIEAFECAQFPTRIAGEIKSFSTDG 219
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
W+APKLSKRMDKFMLY+LTAGKKALADGGITED+M+ELDK+KCGVLIGS +GGMKVF DA
Sbjct: 220 WIAPKLSKRMDKFMLYMLTAGKKALADGGITEDIMDELDKAKCGVLIGSAMGGMKVFNDA 279
Query: 283 IEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
IEALR+SY+KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII
Sbjct: 280 IEALRVSYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 339
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
RGEA++MLCGGSDAA+IPIGLGGFVACRALSQRN+DP KASRPWD+NRDGFVMGEGAGVL
Sbjct: 340 RGEADIMLCGGSDAAIIPIGLGGFVACRALSQRNDDPAKASRPWDMNRDGFVMGEGAGVL 399
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
LLEELEHAKKRGA IYAEF GGSFT DAYHMTEP P G+GVILC+EKALA SGVSREDVN
Sbjct: 400 LLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPRPGGIGVILCVEKALAQSGVSREDVN 459
Query: 463 YINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522
YINAHATSTPAGDIKE+ AL+HCFGQN GLRVNSTKSMIGHLLGAAGAVEAIA +QAIRT
Sbjct: 460 YINAHATSTPAGDIKEFGALMHCFGQNPGLRVNSTKSMIGHLLGAAGAVEAIAAIQAIRT 519
Query: 523 GWIHPNINLENPD 535
GW+HPNINLENPD
Sbjct: 520 GWVHPNINLENPD 532
|
Source: Jatropha curcas Species: Jatropha curcas Genus: Jatropha Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550355|ref|XP_002516228.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] gi|223544714|gb|EEF46230.1| 46 kDa ketoavyl-ACP synthase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/554 (72%), Positives = 448/554 (80%), Gaps = 26/554 (4%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCG 60
M S S +SPLCTWLVAACMS TC + H + T S RRR K
Sbjct: 1 MMGSASLSSPLCTWLVAACMSVTCSKENRH---AFFSSSTPGTTSSHSRTRRRP---KYN 54
Query: 61 VGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNN 120
+ S +S S S S Q LM+SCL FEPC+ YYSS G F +
Sbjct: 55 SISTPASQSFFNSLSSSGSSFQQLMSSCLAFEPCSHYYSSN---GLFPN----------- 100
Query: 121 STATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGH 180
T L +R RL +R+ RSGEAMAVAVQP++EV T KKP MKQ+RVVVTGMG+VSPLGH
Sbjct: 101 -TPLLPKRHPRLH-HRLPRSGEAMAVAVQPEKEVATNKKPLMKQRRVVVTGMGVVSPLGH 158
Query: 181 EPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240
+ DV+YNNLL+G SGIS+I++FDC FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLY+L
Sbjct: 159 DIDVYYNNLLDGSSGISQIDSFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYML 218
Query: 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300
TAGKKALADGGITED+M+ELDK++CGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPF
Sbjct: 219 TAGKKALADGGITEDMMDELDKARCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPF 278
Query: 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360
ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDAA+IP
Sbjct: 279 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADIMLCGGSDAAIIP 338
Query: 361 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
IGLGGFVACRALSQRN+DPTKASRPWD+NRDGFVMGEGAGVLLLEELEHAKKRGA IYAE
Sbjct: 339 IGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAE 398
Query: 421 FRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQ 480
F GGSFT DAYHMTEP PDGVGVILCIEKALA SGVS+E+VNYINAHATSTPAGD+KEY+
Sbjct: 399 FLGGSFTCDAYHMTEPRPDGVGVILCIEKALARSGVSKEEVNYINAHATSTPAGDLKEYE 458
Query: 481 ALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAI 540
AL+ CF QN LRVNSTKSMIGHLLGAAGAVEAIA +QAIRTGW+HPNINLENP+ +
Sbjct: 459 ALMRCFSQNPDLRVNSTKSMIGHLLGAAGAVEAIATIQAIRTGWVHPNINLENPEE--GV 516
Query: 541 DSGHECACGPKERE 554
D+ + GPK+
Sbjct: 517 DT--KVLVGPKKER 528
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|210110425|gb|ACJ07142.1| beta-ketoacyl-ACP synthase II-1 [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/534 (74%), Positives = 439/534 (82%), Gaps = 30/534 (5%)
Query: 2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGV 61
+++ S SPLCTWLVAACMS TC + P + LR ++R +L
Sbjct: 4 SAASSMASPLCTWLVAACMSVTCHADRAGTPKAALRSSKRSRRTKALPPNTSQL------ 57
Query: 62 GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNS 121
N L+SS GSS IQ L++S FEPC++Y ++ N FSS F S
Sbjct: 58 -----NMRLISSLYGSS--IQGLISS---FEPCDDYCNT--------HNAFSSLFRST-- 97
Query: 122 TATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHE 181
T NRR RL N++ SG+ MAVAV+P EVTT KKP KQ+RVVVTG+G+V+PLGHE
Sbjct: 98 --TPNRRHTRL--NKLAHSGKTMAVAVEPAHEVTTTKKPPTKQRRVVVTGLGVVTPLGHE 153
Query: 182 PDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241
PDV+YNNLL+GVSGISEIETFDC +PT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLT
Sbjct: 154 PDVYYNNLLDGVSGISEIETFDCAEYPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLT 213
Query: 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFA 301
AGKKAL DGGITEDVM+EL+K KCGVLIGS +GGMKVF DAIEALR+SYKKMNPFCVPFA
Sbjct: 214 AGKKALVDGGITEDVMDELNKEKCGVLIGSAMGGMKVFNDAIEALRVSYKKMNPFCVPFA 273
Query: 302 TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361
TTNMGSA+LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA+VMLCGGSDAA+IPI
Sbjct: 274 TTNMGSAILAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPI 333
Query: 362 GLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF 421
GLGGFVACRALSQRN DPTKASRPWDINRDGFVMGEGAGVLLLE+LEHAKKRGA IYAEF
Sbjct: 334 GLGGFVACRALSQRNTDPTKASRPWDINRDGFVMGEGAGVLLLEDLEHAKKRGATIYAEF 393
Query: 422 RGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481
GGSFT DAYH+TEP PDG GVILCIEKALA SGVS+EDVNYINAHATSTPAGD+KE+QA
Sbjct: 394 LGGSFTCDAYHVTEPRPDGAGVILCIEKALAQSGVSKEDVNYINAHATSTPAGDLKEFQA 453
Query: 482 LIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535
L+HCFGQN LRVNSTKSMIGHLLGAAG VEA+A VQAIRTGW+HPNINLENPD
Sbjct: 454 LLHCFGQNPELRVNSTKSMIGHLLGAAGGVEAVATVQAIRTGWVHPNINLENPD 507
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1698690|gb|AAB37271.1| beta-ketoacyl-ACP synthase II [Cuphea wrightii] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/543 (74%), Positives = 446/543 (82%), Gaps = 42/543 (7%)
Query: 10 PLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGS 69
P CTWLVA+CMS T DP P ++R+ KR
Sbjct: 11 PFCTWLVASCMS-TSFDNDPRSPS--VKRFPRRKR------------------------- 42
Query: 70 LVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129
V S GS+ Q L+ASC+ +PC++Y SS +SL F GDNGF+S FGS + NR
Sbjct: 43 -VLSQRGST--FQCLVASCI--DPCDQYRSS-ASLSFLGDNGFASLFGSKPFMS--NRGH 94
Query: 130 RRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNL 189
RRLR R + SGEAMAVA+QP +E TKKKP +KQ+RVVVTGMG+V+PLGHEPDVFYNNL
Sbjct: 95 RRLR--RASHSGEAMAVALQPAQEAGTKKKPVIKQRRVVVTGMGVVTPLGHEPDVFYNNL 152
Query: 190 LEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD 249
L+GVSGISEIETFDCT FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD
Sbjct: 153 LDGVSGISEIETFDCTQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALAD 212
Query: 250 GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM 309
GGIT++VM ELDK KCGVLIGSG+GGMKVF DAIEALR+SYKKMNPFCVPFATTNMGSAM
Sbjct: 213 GGITDEVMKELDKRKCGVLIGSGMGGMKVFNDAIEALRVSYKKMNPFCVPFATTNMGSAM 272
Query: 310 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVAC 369
LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA++MLCGGSDA +IPIGLGGFVAC
Sbjct: 273 LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADMMLCGGSDAVIIPIGLGGFVAC 332
Query: 370 RALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSD 429
RALSQRN+DPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAEF GGSFT D
Sbjct: 333 RALSQRNSDPTKASRPWDSNRDGFVMGEGAGVLLLEELEHAKKRGATIYAEFLGGSFTCD 392
Query: 430 AYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN 489
AYHMTEPHP+G GVILCIEKALA +GVS+EDVNYINAHATST AGDIKEYQAL CFGQN
Sbjct: 393 AYHMTEPHPEGAGVILCIEKALAQAGVSKEDVNYINAHATSTSAGDIKEYQALARCFGQN 452
Query: 490 RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGHECACG 549
LRVNSTKSMIGHLLGAAG VEA+ VVQAIRTGWIHPN+NLE+PD A+D+ + G
Sbjct: 453 SELRVNSTKSMIGHLLGAAGGVEAVTVVQAIRTGWIHPNLNLEDPDK--AVDA--KLLVG 508
Query: 550 PKE 552
PK+
Sbjct: 509 PKK 511
|
Source: Cuphea wrightii Species: Cuphea wrightii Genus: Cuphea Family: Lythraceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3800747|gb|AAC68860.1| 3-ketoacyl-ACP synthase [Cuphea avigera var. pulcherrima] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/534 (75%), Positives = 439/534 (82%), Gaps = 31/534 (5%)
Query: 2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGV 61
A+S SPLCTWL+AACMS + DP PPS+ R + + SA +
Sbjct: 3 AASSLLASPLCTWLLAACMSTSFHPSDP-LPPSISSPRRRLSRRRILSQCAPLPSASSAL 61
Query: 62 GGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNS 121
G SSF H++ + +C FEPC++YY+S +S FGS
Sbjct: 62 RG--------SSF----HTLVTSYLAC--FEPCHDYYTS------------ASLFGSRPI 95
Query: 122 TATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHE 181
T RR RRL NR + S EAMAVA+QP++EVTTKKKP +KQ+RVVVTGMG+V+PLGH+
Sbjct: 96 RTT--RRHRRL--NRASPSREAMAVALQPEQEVTTKKKPSIKQRRVVVTGMGVVTPLGHD 151
Query: 182 PDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241
PDVFYNNLL+G SGISEIETFDC FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLY+LT
Sbjct: 152 PDVFYNNLLDGTSGISEIETFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYMLT 211
Query: 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFA 301
AGKKAL DGGITEDVM ELDK KCGVLIGS +GGMKVF DAIEALRISYKKMNPFCVPFA
Sbjct: 212 AGKKALTDGGITEDVMKELDKRKCGVLIGSAMGGMKVFNDAIEALRISYKKMNPFCVPFA 271
Query: 302 TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361
TTNMGSAMLAMDLGWMGPNYSISTACATSNFCI+NAANHIIRGEA+VMLCGGSDA +IPI
Sbjct: 272 TTNMGSAMLAMDLGWMGPNYSISTACATSNFCIMNAANHIIRGEADVMLCGGSDAVIIPI 331
Query: 362 GLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF 421
G+GGFVACRALSQRN+DPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGA IYAEF
Sbjct: 332 GMGGFVACRALSQRNSDPTKASRPWDSNRDGFVMGEGAGVLLLEELEHAKKRGATIYAEF 391
Query: 422 RGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481
GGSFT DAYHMTEPHPDG GVILCIEKALA SGVSREDVNYINAHATSTPAGDIKEYQA
Sbjct: 392 LGGSFTCDAYHMTEPHPDGAGVILCIEKALAQSGVSREDVNYINAHATSTPAGDIKEYQA 451
Query: 482 LIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535
LIHCFGQNR L+VNSTKSMIGHLLGAAG VEA++VVQAIRTGWIHPNINLENPD
Sbjct: 452 LIHCFGQNRELKVNSTKSMIGHLLGAAGGVEAVSVVQAIRTGWIHPNINLENPD 505
|
Source: Cuphea avigera var. pulcherrima Species: Cuphea avigera Genus: Cuphea Family: Lythraceae Order: Myrtales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738522|emb|CBI27767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/533 (73%), Positives = 425/533 (79%), Gaps = 54/533 (10%)
Query: 9 SPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNG 68
SPLCTWLVAACMS T + +P V +KR RRR L
Sbjct: 4 SPLCTWLVAACMSVTADNEFAPKPSMV----QCSKRLSRWGKRRRGLP------------ 47
Query: 69 SLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRR 128
YS+ FFGDN SS FGS + LNRR
Sbjct: 48 -----------------------------YSA-----FFGDNALSSVFGSK--SLPLNRR 71
Query: 129 QRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNN 188
QRR NR + SGE MAVAVQP +EVTTKKKP +Q+RVVVTGMG++SP+GHEPD FYNN
Sbjct: 72 QRRT--NRGSHSGETMAVAVQPAKEVTTKKKPLTEQRRVVVTGMGVMSPIGHEPDSFYNN 129
Query: 189 LLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALA 248
LLEGVSGISEIE+FDC+ FPT+IA EIKSFSTDGW+APKLSKRMDKFMLY+LTAGKKALA
Sbjct: 130 LLEGVSGISEIESFDCSHFPTRIAGEIKSFSTDGWIAPKLSKRMDKFMLYMLTAGKKALA 189
Query: 249 DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308
DGGITEDV +ELDKS+CGVLIGS +GG+KVF DAIEALR+SY+KMNPFCVPFATTNMGSA
Sbjct: 190 DGGITEDVTDELDKSRCGVLIGSAMGGIKVFNDAIEALRVSYRKMNPFCVPFATTNMGSA 249
Query: 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA 368
MLAMDLGWMGPNYSISTACATSNFCILNA+NHIIRGEA++MLCGGSDAA+IPIGLGGFVA
Sbjct: 250 MLAMDLGWMGPNYSISTACATSNFCILNASNHIIRGEADMMLCGGSDAAIIPIGLGGFVA 309
Query: 369 CRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTS 428
CRALSQRNNDPTKASRPWD NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF GGSFT
Sbjct: 310 CRALSQRNNDPTKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFLGGSFTC 369
Query: 429 DAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ 488
DAYHMTEPHPDG GVILCIE ALA SGVSREDVNYINAHATST AGD +EYQAL+ CFGQ
Sbjct: 370 DAYHMTEPHPDGAGVILCIESALARSGVSREDVNYINAHATSTLAGDFREYQALVRCFGQ 429
Query: 489 NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
N L+VNSTKSMIGHLLGAAGAVEAIA +QAIRTGW+HPNINLE+P+ V D
Sbjct: 430 NPELKVNSTKSMIGHLLGAAGAVEAIATIQAIRTGWVHPNINLESPEEGVDTD 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742964|emb|CBI35831.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/543 (73%), Positives = 437/543 (80%), Gaps = 46/543 (8%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDP-----HQPPSVLRRYTNNKREGLSAARRRKL 55
MA+S S SPLCTWLVAACMS C P Q P L R
Sbjct: 1 MAAS-SVASPLCTWLVAACMSVACEKDHPLKSSMFQTPKRLSR----------------- 42
Query: 56 SAKCGVGGEVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSL---GFFGDNGF 112
+SSF GSS I +LM+SCL FEPC Y SS FFGDNGF
Sbjct: 43 -------------GWISSFYGSS--IHNLMSSCLAFEPCEAYSSSKGLSSSLAFFGDNGF 87
Query: 113 SSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGM 172
S FGS S +N RQR R+NR S + MAVAV+P EVT KKKP KQ+RVVVTGM
Sbjct: 88 -SLFGSKPS--PMNHRQR--RMNRAAHSDKNMAVAVKPAAEVTAKKKPLTKQRRVVVTGM 142
Query: 173 GLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRM 232
G+V+P+GH+ DVFYNNLLEGVSGISEIE FDC FPT+IA EIKSFSTDGWVAPKLSKR
Sbjct: 143 GVVTPVGHDLDVFYNNLLEGVSGISEIEAFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRA 202
Query: 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKK 292
DKFMLY+LTAGKKALADGG+TEDVM+ELDK++CGVLIGS +GGMKVF DAIEALRISY+K
Sbjct: 203 DKFMLYMLTAGKKALADGGVTEDVMSELDKARCGVLIGSAMGGMKVFNDAIEALRISYRK 262
Query: 293 MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCG 352
MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGE ++MLCG
Sbjct: 263 MNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGETDMMLCG 322
Query: 353 GSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKK 412
GSDAA+IPIGLGGFVACRALSQRN+DP KASRPWDINRDGFVMGEGAGVLLLEELEHAK+
Sbjct: 323 GSDAAIIPIGLGGFVACRALSQRNSDPAKASRPWDINRDGFVMGEGAGVLLLEELEHAKR 382
Query: 413 RGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTP 472
RGA IYAEF GGSFT DAYHMTEPHP+G GV+LCIEKALA +GV+REDVNYINAHATSTP
Sbjct: 383 RGANIYAEFLGGSFTCDAYHMTEPHPEGTGVVLCIEKALAQAGVAREDVNYINAHATSTP 442
Query: 473 AGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLE 532
+GD+KE+QALI CFGQN LRVNSTKSMIGHLLGA+GAVEA+A V+AI+TGW+HPNINLE
Sbjct: 443 SGDLKEFQALIRCFGQNPKLRVNSTKSMIGHLLGASGAVEAVATVKAIQTGWVHPNINLE 502
Query: 533 NPD 535
NPD
Sbjct: 503 NPD 505
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482462|ref|XP_002272201.2| PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/580 (70%), Positives = 449/580 (77%), Gaps = 66/580 (11%)
Query: 1 MASSCSFTSPLCTWLVAACMSFTCGSRDP-----HQPPSVLRRYTNNKREGLSAARRRKL 55
MA+S S SPLCTWLVAACMS C P Q P L R+ A+RR
Sbjct: 1 MAAS-SVASPLCTWLVAACMSVACEKDHPLKSSMFQTPKRLSRW----------AKRR-- 47
Query: 56 SAKCGVGG-EVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSL---GFFGDNG 111
+C GG + + +SSF GSS I +LM+SCL FEPC Y SS FFGDNG
Sbjct: 48 -LQCSNGGVDYFSSGWISSFYGSS--IHNLMSSCLAFEPCEAYSSSKGLSSSLAFFGDNG 104
Query: 112 FSSFFGSNNSTATLNRRQRRLRLNRVTRSGEA---------------------------- 143
FS FGS S +N RQRR+ NR SG A
Sbjct: 105 FS-LFGSKPSP--MNHRQRRM--NRAAHSGSAIVYKELWTCGVMHHNNAYFLTMMYKYPT 159
Query: 144 --------MAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSG 195
MAVAV+P EVT KKKP KQ+RVVVTGMG+V+P+GH+ DVFYNNLLEGVSG
Sbjct: 160 SCPPPDKNMAVAVKPAAEVTAKKKPLTKQRRVVVTGMGVVTPVGHDLDVFYNNLLEGVSG 219
Query: 196 ISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITED 255
ISEIE FDC FPT+IA EIKSFSTDGWVAPKLSKR DKFMLY+LTAGKKALADGG+TED
Sbjct: 220 ISEIEAFDCAQFPTRIAGEIKSFSTDGWVAPKLSKRADKFMLYMLTAGKKALADGGVTED 279
Query: 256 VMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315
VM+ELDK++CGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPFATTNMGSAMLAMDLG
Sbjct: 280 VMSELDKARCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLG 339
Query: 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR 375
WMGPNYSISTACATSNFCILNAANHIIRGE ++MLCGGSDAA+IPIGLGGFVACRALSQR
Sbjct: 340 WMGPNYSISTACATSNFCILNAANHIIRGETDMMLCGGSDAAIIPIGLGGFVACRALSQR 399
Query: 376 NNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTE 435
N+DP KASRPWDINRDGFVMGEGAGVLLLEELEHAK+RGA IYAEF GGSFT DAYHMTE
Sbjct: 400 NSDPAKASRPWDINRDGFVMGEGAGVLLLEELEHAKRRGANIYAEFLGGSFTCDAYHMTE 459
Query: 436 PHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVN 495
PHP+G GV+LCIEKALA +GV+REDVNYINAHATSTP+GD+KE+QALI CFGQN LRVN
Sbjct: 460 PHPEGTGVVLCIEKALAQAGVAREDVNYINAHATSTPSGDLKEFQALIRCFGQNPKLRVN 519
Query: 496 STKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535
STKSMIGHLLGA+GAVEA+A V+AI+TGW+HPNINLENPD
Sbjct: 520 STKSMIGHLLGASGAVEAVATVKAIQTGWVHPNINLENPD 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| TAIR|locus:2027252 | 541 | FAB1 "fatty acid biosynthesis | 0.732 | 0.754 | 0.748 | 1.3e-176 | |
| UNIPROTKB|Q9KQH9 | 414 | fabF "3-oxoacyl-[acyl-carrier- | 0.676 | 0.910 | 0.417 | 9.3e-75 | |
| TIGR_CMR|VC_2019 | 414 | VC_2019 "3-oxoacyl-(acyl-carri | 0.676 | 0.910 | 0.417 | 9.3e-75 | |
| TIGR_CMR|CBU_0497 | 414 | CBU_0497 "3-oxoacyl-acyl carri | 0.676 | 0.910 | 0.421 | 6.5e-74 | |
| UNIPROTKB|P0AAI5 | 413 | fabF "FabF" [Escherichia coli | 0.676 | 0.912 | 0.413 | 4.1e-72 | |
| TIGR_CMR|SO_2774 | 412 | SO_2774 "3-oxoacyl-(acyl-carri | 0.676 | 0.915 | 0.403 | 1.6e-70 | |
| TIGR_CMR|GSU_1605 | 410 | GSU_1605 "3-oxoacyl-(acyl-carr | 0.669 | 0.909 | 0.410 | 2.1e-70 | |
| TIGR_CMR|CHY_1445 | 412 | CHY_1445 "3-oxoacyl-(acyl-carr | 0.671 | 0.907 | 0.390 | 1.4e-69 | |
| TIGR_CMR|CPS_2299 | 412 | CPS_2299 "3-oxoacyl-[acyl-carr | 0.671 | 0.907 | 0.396 | 5.6e-68 | |
| TIGR_CMR|ECH_0882 | 422 | ECH_0882 "3-oxoacyl-(acyl-carr | 0.660 | 0.872 | 0.391 | 2.4e-67 |
| TAIR|locus:2027252 FAB1 "fatty acid biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1633 (579.9 bits), Expect = 1.3e-176, Sum P(2) = 1.3e-176
Identities = 309/413 (74%), Positives = 344/413 (83%)
Query: 140 SGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI 199
SG AMAV ++ ++E KKP +Q+RVVVTGMG+ + LGH+P FY NLL+G SGIS+I
Sbjct: 106 SGGAMAV-MEMEKEAAVNKKPPTEQRRVVVTGMGVETSLGHDPHTFYENLLQGNSGISQI 164
Query: 200 ETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNE 259
E FDC+ FPT+IA EIKSFST+GWVAPKLSKRMDKFMLYLLTAGKKALADGG+T++VM E
Sbjct: 165 ENFDCSEFPTRIAGEIKSFSTEGWVAPKLSKRMDKFMLYLLTAGKKALADGGVTDEVMAE 224
Query: 260 LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319
DK+KCGVLIGS +GGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP
Sbjct: 225 FDKTKCGVLIGSAMGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 284
Query: 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDP 379
NYSISTACATSNFCILN+ANHII+GEA+VMLCGGSDA +IPIGLGGFVACRALSQRNNDP
Sbjct: 285 NYSISTACATSNFCILNSANHIIKGEADVMLCGGSDAVIIPIGLGGFVACRALSQRNNDP 344
Query: 380 TKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439
TKASRPWD NRDGFVM HAKKRGA IYAEF GGSFT DAYHMTEPHPD
Sbjct: 345 TKASRPWDTNRDGFVMGEGAGVLLLEELEHAKKRGATIYAEFLGGSFTCDAYHMTEPHPD 404
Query: 440 GVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKS 499
G GVILCIE+ALA +G+S+E +NYINAHATST AGDIKEYQAL HCFGQN L+VNSTKS
Sbjct: 405 GAGVILCIERALASAGISKEQINYINAHATSTHAGDIKEYQALAHCFGQNPELKVNSTKS 464
Query: 500 MIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVAIDSGHECACGPKE 552
MIGHLL RTGW+HPNINLENPD+ +D+ + GPK+
Sbjct: 465 MIGHLLGAAGAVEAVATVQAIRTGWVHPNINLENPDS--GVDT--KLLVGPKK 513
|
|
| UNIPROTKB|Q9KQH9 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 160/383 (41%), Positives = 230/383 (60%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HAK RGAKIYAE G + DAYHMT P DG G L +E A+ +GV+ E
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQ 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQ--NRGLRVNSTKSMIGHLLXXXXXXXXXXXXX 518
+ Y+NAH TSTPAGD+ E + + G+ + + V+STKSM GHLL
Sbjct: 298 IGYVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVSSTKSMTGHLLGAAGSVEAIITVM 357
Query: 519 XXRTGWIHPNINLENPDAVVAID 541
+ P INL+NP+ + +D
Sbjct: 358 SLVDQMVPPTINLDNPEEGLGVD 380
|
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| TIGR_CMR|VC_2019 VC_2019 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 160/383 (41%), Positives = 230/383 (60%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ +NE + ++ GV IGSG+GG+++
Sbjct: 61 QYMSKKDARKMDLFIQYGIAAGIQALEDSGLE---VNEENAARIGVAIGSGIGGLELIET 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALIEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HAK RGAKIYAE G + DAYHMT P DG G L +E A+ +GV+ E
Sbjct: 238 IMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQ 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQ--NRGLRVNSTKSMIGHLLXXXXXXXXXXXXX 518
+ Y+NAH TSTPAGD+ E + + G+ + + V+STKSM GHLL
Sbjct: 298 IGYVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVLVSSTKSMTGHLLGAAGSVEAIITVM 357
Query: 519 XXRTGWIHPNINLENPDAVVAID 541
+ P INL+NP+ + +D
Sbjct: 358 SLVDQMVPPTINLDNPEEGLGVD 380
|
|
| TIGR_CMR|CBU_0497 CBU_0497 "3-oxoacyl-acyl carrier protein synthase II" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 161/382 (42%), Positives = 223/382 (58%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M+++RVV+TG+G+VSPLG++ + LL G SG+ I FD +SFPT+IAAE++ F
Sbjct: 1 MEKRRVVITGLGVVSPLGNKVSDMWQALLAGKSGVKPITRFDASSFPTQIAAEVRDFDPA 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++ D F+ + + + ++A D G+ +NE + + GV IGSG+GGM
Sbjct: 61 LVLDLKSIRKTDVFVQFAMESARQAWEDSGLE---INETNAPRVGVAIGSGIGGMPWIEK 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL S +K++PF +P A NM S M+++ GPN SI TAC T I +AA
Sbjct: 118 NYDALLTSGPRKISPFFIPGAIINMASGMVSIKYDLKGPNISIVTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I +A+ M+ GG++ A P+G+GGF A RALS RN++P KASRPWD RDGFV+
Sbjct: 178 IAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTRNDEPEKASRPWDKGRDGFVLGEGAA 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HAKKR A IYAE G + DAYHMT P P+ G C++ +L +G++ E
Sbjct: 238 CVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRPDPEAEGFTTCMKNSLRDAGIAPER 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXXXXXXXXX 519
V+YINAH TSTPA D E +A+ FG + L V+STKSM GH+L
Sbjct: 298 VDYINAHGTSTPAADPLEARAIKKTFGDHAYKLAVSSTKSMTGHMLGAAGALETVISVLA 357
Query: 520 XRTGWIHPNINLENPDAVVAID 541
R P INLENPD +D
Sbjct: 358 IRDNTAPPTINLENPDEGCDLD 379
|
|
| UNIPROTKB|P0AAI5 fabF "FabF" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 158/382 (41%), Positives = 225/382 (58%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 1 MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ + E + ++ G IGSG+GG+ + +
Sbjct: 61 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEE 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+L +K++PF VP NM + L + G GP+ SI+TAC + I +AA
Sbjct: 118 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARI 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 178 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+
Sbjct: 238 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQ 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXX 519
+ Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL
Sbjct: 298 IGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILA 357
Query: 520 XRTGWIHPNINLENPDAVVAID 541
R + P INL+NPD +D
Sbjct: 358 LRDQAVPPTINLDNPDEGCDLD 379
|
|
| TIGR_CMR|SO_2774 SO_2774 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 154/382 (40%), Positives = 219/382 (57%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+GLV+P+G+ D + LL G SGI+ I FD + F T+ + +K F +
Sbjct: 1 MSKRRVVVTGLGLVTPVGNTVDTTWKALLSGKSGIAPITKFDASEFTTRFSGSVKDFDVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD F+ Y + AG +A+ D G+ M++++ + G IG+G+GGM +
Sbjct: 61 QYLTKKDARKMDLFIQYGMAAGIQAIQDSGLD---MSKVNPGRVGTAIGAGMGGMWLIEQ 117
Query: 282 AIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
AL +K++PF VP NM + L++ G GPN++++TAC T I AA
Sbjct: 118 NHSALMNGGPRKISPFFVPSTIINMIAGHLSIMYGMTGPNFAVTTACTTGVHNIGFAART 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 400
I G+A+VM+ GG++ P+G+GGF A +ALS RN+DPT ASRPWD +RDGFV+
Sbjct: 178 IAYGDADVMVAGGAEDVTCPLGVGGFGAAKALSTRNDDPTAASRPWDKDRDGFVIGDGAG 237
Query: 401 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
HAK RGA IY E G + DA+HMT P DG G + A+ + + E
Sbjct: 238 VMVMEEYEHAKARGATIYGELVGFGMSGDAFHMTSPPSDGAGAAAAMVNAVNDAKLPLEK 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXXXXXXXXX 519
+ YINAH TSTPAGD E A+ FG + L V+STKSM GHLL
Sbjct: 298 IGYINAHGTSTPAGDKAEAAAVKSVFGDHAYNLLVSSTKSMTGHLLGAAGAVEAIFTLLA 357
Query: 520 XRTGWIHPNINLENPDAVVAID 541
R + P INL+NPD +D
Sbjct: 358 LRDQAVPPTINLDNPDEGCDLD 379
|
|
| TIGR_CMR|GSU_1605 GSU_1605 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 156/380 (41%), Positives = 216/380 (56%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G VSPLG ++ L+ G SGI I FD + P +IA E+K F + ++
Sbjct: 2 RRVVVTGVGAVSPLGVGNAANWDALVSGTSGIGHITRFDASDLPVRIAGEVKGFDPEQYI 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF--YDA 282
K K+MD F+ Y + A A+ D G+ + E + + GVL+G+GLGG+ Y A
Sbjct: 62 DKKEVKKMDLFIQYAMAAAHYAMEDSGLQ---ITEENAERTGVLVGAGLGGLPTIEKYHA 118
Query: 283 IEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
L +KK++PF +P N+ +++ G GPN S +ACAT I +A + I
Sbjct: 119 A-MLEGGHKKISPFFIPMLIINLAPGHISIKYGAKGPNLSSVSACATGTHSIGDAYHMIK 177
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXX 402
RG+A+ M+ GG+++ V P+G+GGF +ALS RN+DPT ASRP++ NRDGFV+
Sbjct: 178 RGDADAMIAGGTESTVTPLGIGGFAVMKALSTRNDDPTAASRPFEKNRDGFVLAEGAGIV 237
Query: 403 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
AKKRGAKIYAE G T DAYH+T P P+G G C++ AL ++GV E+V+
Sbjct: 238 VLEEYEAAKKRGAKIYAEIVGYGLTGDAYHLTAPAPEGEGAARCMKMALNNAGVRPEEVD 297
Query: 463 YINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXR 521
YINAH TSTP D E A+ FG + + V+STKSM GHLL
Sbjct: 298 YINAHGTSTPFNDYYETLAVKSVFGDYAKKVMVSSTKSMTGHLLGAAGGVEAVFTLMAMD 357
Query: 522 TGWIHPNINLENPDAVVAID 541
G I P IN + D +D
Sbjct: 358 KGVIPPTINYQEQDPECDLD 377
|
|
| TIGR_CMR|CHY_1445 CHY_1445 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 148/379 (39%), Positives = 221/379 (58%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+GL+SPLG ++NL++GVSG+ E+ +FD T F T+IAAE++ F ++
Sbjct: 2 KRVVVTGLGLISPLGIGIKENWDNLMKGVSGVREVSSFDTTGFATRIAAEVRDFDPLKFI 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K ++RMD+F + + A K A+ D G+ +++++ + G+ IGSG+GG+K +
Sbjct: 62 DKKEARRMDRFTQFAVAATKLAIEDAGLE---LSKINPERAGIFIGSGIGGIKTLEEQAA 118
Query: 285 ALRISYK-KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
LR +++PF VP NM +A+ G GPN +I +ACA+ + +A + R
Sbjct: 119 ILREKGPDRVSPFFVPMMIANMAGGQIAITFGLTGPNETIVSACASGANAVGDAFRCLQR 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 403
GE +V + GG++AA+ P+ GF + +A+S RN++P KASRP+D +RDGFVM
Sbjct: 179 GEVDVAIAGGAEAAITPLSFAGFCSMKAMSTRNDEPEKASRPFDKDRDGFVMGEGAGILI 238
Query: 404 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463
HA RGA+IY E G TSDAYH+T P P+G G +E AL + ++ ED++Y
Sbjct: 239 LETLEHALARGARIYGEIVGYGVTSDAYHITAPDPEGKGAARAMELALKDARLNPEDIDY 298
Query: 464 INAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRT 522
INAH TSTP D E A+ FG + L V+STKSM GHLL
Sbjct: 299 INAHGTSTPLNDKVETLAIKKVFGDHAYKLMVSSTKSMTGHLLGAAGGIETIYSILAVFF 358
Query: 523 GWIHPNINLENPDAVVAID 541
+ P +N + P+ + +D
Sbjct: 359 NQVPPTLNCDEPEEGLDLD 377
|
|
| TIGR_CMR|CPS_2299 CPS_2299 "3-oxoacyl-[acyl-carrier-protein] synthase II" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 151/381 (39%), Positives = 216/381 (56%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G++SPL + + + NLL G SGI I+ FD T +PTK A +K F ++
Sbjct: 2 RRVVVTGIGMLSPLANTAEETWQNLLLGKSGIGNIDHFDTTDYPTKFAGLVKDFDAQNYM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF---YD 281
K +K+MD F+ Y + AG +A D G+ + E + + GV IGSG+GG+ + ++
Sbjct: 62 ERKEAKKMDLFIQYGIAAGVQAFKDSGLE---VTEQNAPRIGVAIGSGIGGLGLIEQNHN 118
Query: 282 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+ + +K++PF VP NM + L++ G GPN +I+TAC + I +AA I
Sbjct: 119 KLIKAEGNPRKLSPFFVPSTIINMIAGHLSIMFGLQGPNIAITTACTSGVHNIGHAARMI 178
Query: 342 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 401
G+A+ ++ GG++ A +G+GGF A RALS+RN+DP ASRPWD +RDGFV+
Sbjct: 179 AYGDADAVVAGGAEKASTTLGMGGFGAARALSRRNDDPEAASRPWDKDRDGFVLGDGAGV 238
Query: 402 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
HAK RGAKIYAE G + DAYHMT P +G G ++ A+ + V +
Sbjct: 239 IVVEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPPENGDGAARAMQNAINDAKVDISRI 298
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 520
YINAH TST AGD+ E A+ FG + + + STKSM GHLL
Sbjct: 299 GYINAHGTSTQAGDMAETNAVKTVFGAGAKNVMMGSTKSMTGHLLGAAGAIEAIFSIQAL 358
Query: 521 RTGWIHPNINLENPDAVVAID 541
+ P INL+NPD +D
Sbjct: 359 VNKQVPPTINLDNPDEGCDLD 379
|
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| TIGR_CMR|ECH_0882 ECH_0882 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 149/381 (39%), Positives = 225/381 (59%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS---- 217
M +KRVV+TG+GLV+ LG + +++L +G+SGI +I+ FD + K+A ++ +
Sbjct: 1 MAKKRVVITGLGLVTSLGSDLKTVWDSLSKGISGIRKIDRFDTSDLDCKVAGQVTTKPES 60
Query: 218 ----FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
F ++ K K+MD F+ + + + +A+ D + + +LD S+ GV++GSG+
Sbjct: 61 EEYIFDAGDYIPEKDLKKMDTFIHFGIASATQAINDSNLLD--YKDLDYSRVGVIVGSGI 118
Query: 274 GGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG++ + L+ K+++PF +P + N+ S ++M G+ G N ++ TAC+T
Sbjct: 119 GGLQFIEKTVICLKERGPKRISPFFIPASLINLTSGHISMKYGFTGLNDAVVTACSTGAQ 178
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRD 391
I NAA I GEA+V++ GG+++A+ IG+ GF A +ALS + ND P ASRPWD RD
Sbjct: 179 AIGNAARVIQSGEADVIIAGGTESAICRIGIAGFAAMKALSTKFNDTPELASRPWDKQRD 238
Query: 392 GFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKAL 451
GFVM HAKKRGA+IY E G TSDAYHM+ PHP+G G I IE AL
Sbjct: 239 GFVMGEGSGVVILEDYEHAKKRGARIYGELLGYGMTSDAYHMSAPHPEGKGGIKSIELAL 298
Query: 452 AHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXX 510
+++ ++ E +NYINAH TSTP GD E QA+ + F ++ + ++STKS IGHLL
Sbjct: 299 SNAQLNPESINYINAHGTSTPIGDSIEIQAIKNVFKESVYKVPISSTKSSIGHLLGAAGS 358
Query: 511 XXXXXXXXXXRTGWIHPNINL 531
TG P +NL
Sbjct: 359 VEAIFCILAMNTGIAPPTLNL 379
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C9P4 | KASC2_ARATH | 2, ., 3, ., 1, ., 4, 1 | 0.7016 | 0.9210 | 0.9482 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.2__1765__AT1G74960.1 | annotation not avaliable (543 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh2_kg.4__990__AT2G30200.1 | annotation not avaliable (367 aa) | • | • | • | • | • | • | 0.955 | ||
 | fgenesh2_kg.2__215__AT1G62640.1 | annotation not avaliable (404 aa) | • | • | • | • | • | 0.945 | |||
 | fgenesh2_kg.6__977__AT5G10160.1 | annotation not avaliable (219 aa) | • | • | • | • | 0.777 | ||||
 | fgenesh2_kg.4__146__AT2G22230.1 | annotation not avaliable (224 aa) | • | • | • | • | 0.748 | ||||
 | fgenesh1_pm.C_scaffold_8000016 | annotation not avaliable (97 aa) | • | • | • | 0.703 | |||||
 | scaffold_303363.1 | annotation not avaliable (390 aa) | • | • | • | 0.664 | |||||
 | scaffold_200993.1 | annotation not avaliable (126 aa) | • | • | 0.578 | ||||||
 | scaffold_703504.1 | annotation not avaliable (127 aa) | • | • | • | 0.573 | |||||
 | fgenesh2_kg.7__3034__AT5G35360.1 | annotation not avaliable (537 aa) | • | • | • | 0.550 | |||||
 | fgenesh2_kg.4__2654__AT2G44620.1 | annotation not avaliable (122 aa) | • | • | • | 0.544 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 557 | |||
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 0.0 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 0.0 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 1e-179 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 1e-172 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 1e-169 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 1e-149 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 1e-119 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 1e-114 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 1e-111 | |
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 1e-108 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 2e-81 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 1e-76 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 1e-75 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 1e-71 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 2e-69 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 6e-68 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 2e-60 | |
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 1e-59 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 4e-56 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 2e-52 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 1e-46 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 1e-43 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 2e-42 | |
| pfam02801 | 119 | pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase | 3e-41 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 3e-35 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 1e-29 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 8e-23 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 1e-17 | |
| cd00829 | 375 | cd00829, SCP-x_thiolase, Thiolase domain associate | 1e-05 | |
| PRK06519 | 398 | PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protei | 4e-05 | |
| PRK08963 | 428 | PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | 2e-04 | |
| cd00751 | 386 | cd00751, thiolase, Thiolase are ubiquitous enzymes | 0.003 | |
| PRK09052 | 399 | PRK09052, PRK09052, acetyl-CoA acetyltransferase; | 0.003 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 878 bits (2269), Expect = 0.0
Identities = 407/535 (76%), Positives = 436/535 (81%), Gaps = 35/535 (6%)
Query: 4 SCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGG 63
S S SPLCTWLVAACMS +C D HQ ++ + G + RRRK G
Sbjct: 3 SASAASPLCTWLVAACMSVSCAGEDAHQAVAL--------QSGGRSRRRRKRRKCSSASG 54
Query: 64 EVVNGSLVSSFSGSSHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTA 123
CL F PC Y SS G N SS FGSN+ +
Sbjct: 55 SASILVTS----------------CLAFGPCTHYNSS-------GGNALSSLFGSNSVS- 90
Query: 124 TLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPD 183
LNR QRR NR RSG+AMAVAVQP++EV TKKKP KQ+RVVVTGMG+VSPLGH+PD
Sbjct: 91 -LNRNQRRR--NRAARSGKAMAVAVQPEKEVETKKKPLTKQRRVVVTGMGVVSPLGHDPD 147
Query: 184 VFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243
VFYNNLLEGVSGISEIE FDC+ FPT+IA EIKSFSTDGWVAPKLSKRMDKFMLYLLTAG
Sbjct: 148 VFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 207
Query: 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT 303
KKALADGGITEDVM ELDK+KCGVLIGS +GGMKVF DAIEALRISY+KMNPFCVPFATT
Sbjct: 208 KKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATT 267
Query: 304 NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL 363
NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA+VMLCGGSDAA+IPIGL
Sbjct: 268 NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGL 327
Query: 364 GGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRG 423
GGFVACRALSQRN+DPTKASRPWD+NRDGFVMGEGAGVLLLEELEHAKKRGA IYAEF G
Sbjct: 328 GGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLG 387
Query: 424 GSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483
GSFT DAYHMTEPHP+G GVILCIEKALA SGVS+EDVNYINAHATST AGD+KEYQAL+
Sbjct: 388 GSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALM 447
Query: 484 HCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVV 538
CFGQN LRVNSTKSMIGHLLGAAGAVEAIA VQAIRTGW+HPNINLENP++ V
Sbjct: 448 RCFGQNPELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGV 502
|
Length = 540 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 524 bits (1353), Expect = 0.0
Identities = 191/379 (50%), Positives = 257/379 (67%), Gaps = 5/379 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G V+PLG+ + F+ LL G SGI I FD + FP++IA E+ F + ++
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +RMD+F + L A ++ALAD G+ + ELD + GV+IGSG+GG+ +A
Sbjct: 61 DRKELRRMDRFAQFALAAAEEALADAGLDPE---ELDPERIGVVIGSGIGGLATIEEAYR 117
Query: 285 ALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
AL ++++PF VP A NM + +A+ LG GPNY++STACA+ I +AA I
Sbjct: 118 ALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G A+V++ GG++A + P+ L GF A RALS RN+DP KASRP+D +RDGFV+GEGAGVL+
Sbjct: 178 GRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463
LE LEHAK RGAKIYAE G +SDAYH+T P PDG G + ALA +G+S ED++Y
Sbjct: 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDY 297
Query: 464 INAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522
INAH TSTP D E +A+ FG+ + + V+STKSM GHLLGAAGAVEAIA + A+R
Sbjct: 298 INAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRD 357
Query: 523 GWIHPNINLENPDAVVAID 541
G + P INLE PD +D
Sbjct: 358 GVLPPTINLEEPDPECDLD 376
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 511 bits (1319), Expect = e-179
Identities = 186/373 (49%), Positives = 254/373 (68%), Gaps = 5/373 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G V+PLG+ + F+ NLL G SGI I FD + P KIA E+K F + ++
Sbjct: 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K ++RMD+F+ Y L A K+A+ D G+ + E D + GV+IGSG+GG++ +
Sbjct: 61 DKKEARRMDRFIQYALAAAKEAVEDSGLDIE---EEDAERVGVIIGSGIGGLETIEEQHI 117
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L ++++PF +P + NM + +++ G GPN+++ TACAT I +A I R
Sbjct: 118 VLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAVVTACATGTHAIGDAFRLIQR 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G+A+VM+ GG++AA+ P+G+ GF A +ALS RN+DP KASRP+D +RDGFVMGEGAGVL+
Sbjct: 178 GDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463
LEELEHAK RGAKIYAE G + DAYH+T P P+G G + AL +G++ EDV+Y
Sbjct: 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDY 297
Query: 464 INAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522
INAH TSTP GD E +A+ FG + L V+STKSM GHLLGAAGA+EAI V A+R
Sbjct: 298 INAHGTSTPLGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVLALRD 357
Query: 523 GWIHPNINLENPD 535
G + P INL+NPD
Sbjct: 358 GIVPPTINLDNPD 370
|
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 492 bits (1270), Expect = e-172
Identities = 195/384 (50%), Positives = 257/384 (66%), Gaps = 15/384 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G VSPLG++ + + NLL G SGI I FD + KIA E+K F+ D ++
Sbjct: 2 RRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ K ++RMD+F+ Y + A K+A+ D G+ + E + + GV+IGSG+GG++ +
Sbjct: 62 SRKEARRMDRFIQYGIAAAKQAVEDAGL---EITEENADRIGVIIGSGIGGLETIEEQHI 118
Query: 285 AL------RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
L R+S PF VP A NM + +++ G GPN+SI TACAT I +AA
Sbjct: 119 TLLEKGPRRVS-----PFFVPMAIINMAAGHVSIRYGAKGPNHSIVTACATGAHAIGDAA 173
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398
I G+A+VM+ GG++AA+ P+G+ GF A RALS RN+DP +ASRP+D +RDGFVMGEG
Sbjct: 174 RLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEG 233
Query: 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 458
AG+L+LEELEHAK RGAKIYAE G T DAYHMT P PDG G ++ AL +G++
Sbjct: 234 AGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINP 293
Query: 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVV 517
ED++YINAH TSTPAGD E QA+ FG+ + V+STKSM GHLLGAAGAVEAI V
Sbjct: 294 EDIDYINAHGTSTPAGDKAETQAIKRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSV 353
Query: 518 QAIRTGWIHPNINLENPDAVVAID 541
AIR I P INL+NPD +D
Sbjct: 354 LAIRDQVIPPTINLDNPDEECDLD 377
|
Length = 411 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 484 bits (1249), Expect = e-169
Identities = 171/385 (44%), Positives = 231/385 (60%), Gaps = 12/385 (3%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS---- 217
M +KR+VVTGMG VSPLG + F+ LL G SGI + F TKI ++
Sbjct: 1 MNKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAED 60
Query: 218 ----FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGL 273
F D ++ PK ++MD+F+L+ + A K+ALA G D D+ + +IGSG+
Sbjct: 61 AEAGFDPDRYLDPKDQRKMDRFILFAMAAAKEALAQAGWDPD--TLEDRERTATIIGSGV 118
Query: 274 GGMKVFYDAIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNF 332
GG +A+ L ++++PF +P TNM + +++ G+ GP + TACA
Sbjct: 119 GGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRYGFKGPLGAPVTACAAGVQ 178
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRD 391
I +AA I GEA+V +CGG++AA+ + L GF A RALS R ND P +ASRP+D +RD
Sbjct: 179 AIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRD 238
Query: 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKAL 451
GFVMGEGAG+L++E LEHA RGA AE G ++DAYHMT DG G + AL
Sbjct: 239 GFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIAL 298
Query: 452 AHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAV 511
+G+ E+V ++NAHATSTP GD+ E A+ FG GL V+STKS GHLLGAAG V
Sbjct: 299 RQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGV 358
Query: 512 EAIAVVQAIRTGWIHPNINLENPDA 536
EAI + A+R P +NLENPD
Sbjct: 359 EAIFTILALRDQIAPPTLNLENPDP 383
|
Length = 424 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 433 bits (1117), Expect = e-149
Identities = 183/374 (48%), Positives = 243/374 (64%), Gaps = 8/374 (2%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+VS LG+ + + LL G SGI I FD + KIA EIK D +
Sbjct: 3 RRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
A K + MD+F + A +AL D G+ + + GV IGSG+GG++ ++
Sbjct: 61 AKKERRFMDRFSQLAVVAAVEALEDAGLDNE---LNVDMRVGVAIGSGIGGLEDIEFDLD 117
Query: 285 ALRISY--KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
AL + K+++PF VP N+ + +A+ G GPNY+ TACAT I +A I
Sbjct: 118 ALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIR 177
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
G+A+V++ GG++AA+ P+G+ GF A RALS RN+DP KASRP+D NRDGFV+GEGAG L
Sbjct: 178 LGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGAL 237
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
+LEELEHA RGAKIYAE G TSDAYH+T P PDG G I + ALA +G++ ED++
Sbjct: 238 VLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDID 297
Query: 463 YINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIR 521
YINAH TSTPA D E A+ FG++ + L V+STKS+ GH LGAAGAVEAI + A+R
Sbjct: 298 YINAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLALR 357
Query: 522 TGWIHPNINLENPD 535
G I P INL+NPD
Sbjct: 358 DGIIPPTINLDNPD 371
|
Length = 412 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 358 bits (921), Expect = e-119
Identities = 161/384 (41%), Positives = 230/384 (59%), Gaps = 24/384 (6%)
Query: 174 LVSPLGHEPDVFYNNLLEGVSGISEIETFDC----------------TSFPTKIAAEIKS 217
+V+PLG + + L+ G SGI ++ F + P +IAAE+
Sbjct: 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQ 60
Query: 218 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 277
D +KR + + + A ++ALAD + D+++E D+ + GV IGSG+G +
Sbjct: 61 SEFDP-SDFAPTKRESRATHFAMAAAREALADAKL--DILSEKDQERIGVNIGSGIGSLA 117
Query: 278 VFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
D ++ L + +++P+ +P NM + ++A+ GP+ S TACAT CI
Sbjct: 118 DLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIKHKLKGPSGSAVTACATGAHCIGE 177
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVM 395
A I GEA++M+CGG++A++ P+ GF RAL + N+DP +ASRP+D +R GFVM
Sbjct: 178 AFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVM 237
Query: 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSG 455
GEGAG+L+LEELEHA +RGAKIYAE RG +SDA+H+T PHPDG G C+E AL
Sbjct: 238 GEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGA 297
Query: 456 -VSREDVNYINAHATSTPAGDIKEYQALIHCFG--QNRGLRVNSTKSMIGHLLGAAGAVE 512
++ DV+Y+NAHATSTP GD E +A+ FG L V+STK +GHLLGAAGAVE
Sbjct: 298 NININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVE 357
Query: 513 AIAVVQAIRTGWIHPNINLENPDA 536
+I + ++ I P INLENPDA
Sbjct: 358 SIVTILSLYEQIIPPTINLENPDA 381
|
Length = 421 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 344 bits (883), Expect = e-114
Identities = 176/383 (45%), Positives = 253/383 (66%), Gaps = 6/383 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTGMG++SP+G+ + + LL G SGI IE FD T+F T+ A +K F+ +
Sbjct: 1 MSKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+++ K +++MD F+ Y + AG +AL D G+ + E + + GV IGSG+GG+ +
Sbjct: 61 EYMSKKDARKMDLFIQYGIAAGIQALDDSGLE---VTEENAHRIGVAIGSGIGGLGLIEA 117
Query: 282 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+AL +K++PF VP NM + L++ G GPN +ISTAC T I +AA
Sbjct: 118 GHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNIAISTACTTGLHNIGHAARM 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+ M+ GG++ A P+G+ GF A +ALS RN++P KASRPWD +RDGFV+G+GAG
Sbjct: 178 IAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAG 237
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+++LEE EHAK RGAKIYAE G + DAYHMT P DG G L +E A+ +GV+ E
Sbjct: 238 MMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQ 297
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQ--NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518
+ Y+NAH TSTPAGD+ E + + G+ ++ + V+STKSM GHLLGAAG+VEAI V
Sbjct: 298 IGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITVM 357
Query: 519 AIRTGWIHPNINLENPDAVVAID 541
++ + P INL++P+ + ID
Sbjct: 358 SLVDQIVPPTINLDDPEEGLDID 380
|
Length = 414 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 338 bits (868), Expect = e-111
Identities = 166/377 (44%), Positives = 226/377 (59%), Gaps = 17/377 (4%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+G+++ LG + + + G GI +I FD + FP +IA EI F +
Sbjct: 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVM 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
PK K+ D+F+ L A ++A+ D G + ELD + GV SG+GG+ IE
Sbjct: 62 DPKEVKKADRFIQLGLKAAREAMKDAGFLPE---ELDAERFGVSSASGIGGLP----NIE 114
Query: 285 ALRISY-----KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
I +K++PF +P A NM ++++ G GPN S TACA I+ A
Sbjct: 115 KNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSSVTACAAGTHAIIEAVK 174
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I+ G A+ ML G+++A+ P+G+GGF A +ALS RN+DP KASRP+D +RDGFVMGEGA
Sbjct: 175 TIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA 234
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459
G L+LEE E AKKRGAKIYAE G + DA H+T P P+ G + ++ AL +G +
Sbjct: 235 GALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAPE--GPLRAMKAALEMAGNPK- 291
Query: 460 DVNYINAHATSTPAGDIKEYQALIHCFGQNRGL-RVNSTKSMIGHLLGAAGAVEAIAVVQ 518
++YINAH TSTP D E AL FG + V+STK IGH LGAAGA+EA+ +
Sbjct: 292 -IDYINAHGTSTPYNDKNETAALKELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVISIM 350
Query: 519 AIRTGWIHPNINLENPD 535
A+R G + P IN E PD
Sbjct: 351 AMRDGILPPTINQETPD 367
|
Length = 406 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 331 bits (851), Expect = e-108
Identities = 166/406 (40%), Positives = 239/406 (58%), Gaps = 36/406 (8%)
Query: 160 PHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI-------ETFDCT------- 205
P + +RVVVTG+GLV+PLG + + L+ G G+ + ++ D
Sbjct: 1 PPLPTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLD 60
Query: 206 SFPTKIAAEIKS------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADG--GITEDVM 257
P+++AA + F + W+ S+ +F+ Y L A +AL+D +ED
Sbjct: 61 QLPSRVAALVPRGTGPGDFDEELWLN---SRSSSRFIGYALCAADEALSDARWLPSEDE- 116
Query: 258 NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYK--KMNPFCVPFATTNMGSAMLAMDLG 315
K + GV IG G+G + +A L + +++PF VP NM + +++ G
Sbjct: 117 ---AKERTGVSIGGGIGSITDILEA-AQLICEKRLRRLSPFFVPRILINMAAGHVSIRYG 172
Query: 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR 375
+ GPN++ TACAT I +A I G+A+VM+ GG+++++ + + GF RALS +
Sbjct: 173 FQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTK 232
Query: 376 NND-PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT 434
N PT+ASRP+D +RDGFV+GEGAGVL+LEELEHAK+RGAKIYAE RG + DA+H+T
Sbjct: 233 FNSCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHIT 292
Query: 435 EPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR---G 491
+PH DG G +L + +AL SG+ V+Y+NAHATSTP GD E +A+ F ++ G
Sbjct: 293 QPHEDGRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGG 352
Query: 492 LRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAV 537
L +STK GHLLGAAGAVEAI V AI G P +NLE PD +
Sbjct: 353 LAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPI 398
|
Length = 437 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 2e-81
Identities = 149/384 (38%), Positives = 211/384 (54%), Gaps = 26/384 (6%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+VS +G+ +L EG SGI+ F +++ +K G +
Sbjct: 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVK-LDPTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITED-VMNELDKSKCGVLIGSGLGGMKVFYDAI 283
K+ + M Y A ++A+AD G++E+ V N + G++ GSG G + +A
Sbjct: 61 DRKVMRFMGDASAYAYLAMEQAIADAGLSEEQVSNP----RTGLIAGSGGGSTRNQVEAA 116
Query: 284 EALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 341
+A+R K++ P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 117 DAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYSISSACATSAHCIGNAVEQI 176
Query: 342 IRGEANVMLCGGSD-----AAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVM 395
G+ +++ GG + + + F A ALS + ND P KASR +D NRDGFV+
Sbjct: 177 QLGKQDIVFAGGGEELDWEMSCL------FDAMGALSTKYNDTPEKASRAYDANRDGFVI 230
Query: 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSG 455
G GV+++EELEHA RGAKIYAE G TSD Y M P G G + C++ ALA
Sbjct: 231 AGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVA--PSGEGAVRCMQMALA--T 286
Query: 456 VSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIA 515
V ++YIN H TSTP GD+KE A+ FG +++TKS+ GH LGAAG EAI
Sbjct: 287 V-DTPIDYINTHGTSTPVGDVKELGAIREVFGDKSP-AISATKSLTGHSLGAAGVQEAIY 344
Query: 516 VVQAIRTGWIHPNINLENPDAVVA 539
+ + G+I P+ N+E D A
Sbjct: 345 SLLMMEHGFIAPSANIEELDPQAA 368
|
Length = 406 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 1e-76
Identities = 146/399 (36%), Positives = 195/399 (48%), Gaps = 23/399 (5%)
Query: 156 TKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEI 215
T + H+ + V VTGMG+V+ LG + L G SGI I F T+IA +
Sbjct: 2 TAYRDHLGRPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTV 61
Query: 216 KSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMN----------ELDKSKC 265
+ A LS+ + + A ++ALA GI + EL+
Sbjct: 62 DFLPESPFGASALSEALAR------LAAEEALAQAGIGKGDFPGPLFLAAPPVELEWPAR 115
Query: 266 GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS--AMLAMDLGWMGPNYSI 323
L + YD + LR + + F GS LA G G S+
Sbjct: 116 FALAAAVGDNDAPSYDRL--LRAA--RGGRFDALHERFQFGSIADRLADRFGTRGLPISL 171
Query: 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383
STACA+ I I RGE + LC +D +V L F ALS +N+ P KAS
Sbjct: 172 STACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKAS 231
Query: 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGV 443
+P+ +RDGFVM EGAG L+LE LE A RGAKI G +D++H T PDG
Sbjct: 232 KPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPA 291
Query: 444 ILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIG 502
I I ALA +G++ E ++YINAH TSTP D EY L FG+ + V+S KSMIG
Sbjct: 292 IGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERLASIPVSSNKSMIG 351
Query: 503 HLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
H L AAGAVEA+ + I+TG + P IN +NPD + +D
Sbjct: 352 HTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLD 390
|
Length = 425 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 1e-75
Identities = 126/382 (32%), Positives = 200/382 (52%), Gaps = 17/382 (4%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGI-----SEIETFDCTSFPTKIAAEIKSFSTD 221
VVVTG+ + + L + + + LL+G SGI +E FD P +I + D
Sbjct: 14 VVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFD---LPVRIGGHLLE-EFD 69
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ +RM G++ + G E +D ++ V IG+GLG +
Sbjct: 70 HQLTRVELRRMSYLQRMSTVLGRRVWENAGSPE-----VDTNRLMVSIGTGLGSAEELVF 124
Query: 282 AIEALRI-SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
A + +R + ++P V N +A + ++ + +ACA+ + I A
Sbjct: 125 AYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAGVITPVSACASGSEAIAQAWRQ 184
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRA-LSQRNNDPTKASRPWDINRDGFVMGEGA 399
I+ GEA++ +CGG + + + + GF R +S N+DP A RP+D +RDGFV GEG
Sbjct: 185 IVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEGG 244
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459
++++E EHAK RGA I A G S TSD +HM P P+G + +A+ +G++
Sbjct: 245 ALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPG 304
Query: 460 DVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
D++++NAHAT T GD+ E +A+ + G +R V + KS +GH +GA GAVE+I V A
Sbjct: 305 DIDHVNAHATGTSVGDVAEGKAINNALGGHRP-AVYAPKSALGHSVGAVGAVESILTVLA 363
Query: 520 IRTGWIHPNINLENPDAVVAID 541
+R G I P +NLEN D + +D
Sbjct: 364 LRDGVIPPTLNLENLDPEIDLD 385
|
Length = 418 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 1e-71
Identities = 139/387 (35%), Positives = 208/387 (53%), Gaps = 18/387 (4%)
Query: 166 RVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222
RVV+TG+G+VSP G E + F+ L EG SGI+ + + F +A +I + G
Sbjct: 2 RVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGDIPG 60
Query: 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 282
W A + + +D+ L L A ++ALAD GIT+ E+ S+ GV++GSG+GG++
Sbjct: 61 WDAKR-TGIVDRTTLLALVATEEALADAGITDP--YEVHPSEVGVVVGSGMGGLRFLRRG 117
Query: 283 IEALRISYKKMNPFCVP--FATTNMGSAMLAMDL-GWMGPNYSISTACATSNFCILNAAN 339
+ + +NP+ P + N + + + L GP + ACAT+ + A
Sbjct: 118 GKLD---ARAVNPYVSPKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVE 174
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I G+A++++ GG + + GL GF ALS +P + SRP+D RDGFV EGA
Sbjct: 175 AIRSGKADIVVVGGVED-PLEEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFVEAEGA 233
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459
GVL+LE E A RGA IY G + T+D + P G G+ I ALA +G+S +
Sbjct: 234 GVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVP-AGGKGIARAIRTALAKAGLSLD 292
Query: 460 DVNYINAHATSTPAGDIKEYQALIHCFGQNRG--LRVNSTKSMIGHLLGAAGAVEAIAVV 517
D++ I+AH TSTPA D+ E +A I G L V + K++ GH GAAGA++ I +
Sbjct: 293 DLDVISAHGTSTPANDVAESRA-IAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGAL 351
Query: 518 QAIRTGWIHPNINLENPDAVVAIDSGH 544
Q++ G I P NL++ D V S
Sbjct: 352 QSLEHGLIPPTANLDDVDPDVEHLSVV 378
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 2e-69
Identities = 139/393 (35%), Positives = 188/393 (47%), Gaps = 49/393 (12%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGW 223
+RVVVTGMG V+ LG + L G + + + +D T++AA I F
Sbjct: 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAH 61
Query: 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 283
K + M + L A + AL D G+ D + L + G+ GS G D I
Sbjct: 62 YTRKKIRSMGRVSLMATRASELALEDAGLLGDPI--LTDGRMGIAYGSSTGST----DPI 115
Query: 284 EAL-------------RISYKKMNPFCVPFATT--NMGSAMLAMDLGWMGPNYSISTACA 328
A +Y +M P TT N+G + G G S+AC
Sbjct: 116 GAFGTMLLEGSMSGITATTYVRMMPH-----TTAVNVG-----LFFGLKGRVIPTSSACT 165
Query: 329 TSNFCILNAANHIIRGEANVMLCGG------SDAAVIPIGLGGFVACRALSQRNNDPTKA 382
+ + I A I G VML GG ++AAV F A S RN+ P
Sbjct: 166 SGSQGIGYAYEAIKYGYQTVMLAGGAEELCPTEAAV-------FDTLFATSTRNDAPELT 218
Query: 383 SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVG 442
RP+D NRDG V+GEGAG L+LEELEHAK RGA IYAE G SD H+T+P + +
Sbjct: 219 PRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQAETMQ 278
Query: 443 VILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIG 502
+ +E AL +G++ ED+ Y+NAH T+T GDI E QA FG + ++S KS G
Sbjct: 279 --IAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGAR--MPISSLKSYFG 334
Query: 503 HLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535
H LGA GA+EA ++ + GW P +NL D
Sbjct: 335 HTLGACGALEAWMSIEMMNEGWFAPTLNLTQVD 367
|
Length = 405 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 6e-68
Identities = 127/283 (44%), Positives = 172/283 (60%), Gaps = 8/283 (2%)
Query: 258 NELDKSKCGVLIGSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMD 313
N + + +IG+G+GG F A+R S K+++PF VP N+ + +++
Sbjct: 21 NTEKQERTATIIGAGIGG---FPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIK 77
Query: 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS 373
+ GP + TACA I +A I EA+V LCGG++A + + L GF A RALS
Sbjct: 78 HHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALS 137
Query: 374 QR-NNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH 432
N+ P KASRP+D RDGFVMGEGAG+L++EELEHA RGAK AE G ++DAYH
Sbjct: 138 THFNSTPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYH 197
Query: 433 MTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGL 492
MT DG G ++ AL +G++ E V ++NAHATSTP GD+ E A+ H FG++ L
Sbjct: 198 MTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGESNAL 257
Query: 493 RVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535
+ STKS GHLLGAAG +E I V A+R + +NLENPD
Sbjct: 258 AITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPD 300
|
Length = 342 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 2e-60
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 20/254 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDG 222
+ V +TGMG P G P+ F+ LL G I E D + P+++A EI F D
Sbjct: 2 EPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPA-DLSGLYPPSRVAGEIYGFDFDA 60
Query: 223 W---VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVF 279
++P+ ++ MD L A +AL D G+ + D+ GV +GSG G
Sbjct: 61 AFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDR--TGVFVGSGSG----D 114
Query: 280 YDAIEALRI--SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 337
Y ++AL ++++P+ ++ + ++ LG GP+ ++ TAC++S L+A
Sbjct: 115 YAELQALDSAGGPRRVSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSS-LVALHA 173
Query: 338 A-NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396
A I RGE ++ L GG +A + P G GF A AL + P KA P+ DGFV G
Sbjct: 174 AVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP-DGPCKAFDPFA---DGFVRG 229
Query: 397 EGAGVLLLEELEHA 410
EG G +LL+EL A
Sbjct: 230 EGVGAVLLKELSEA 243
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-59
Identities = 117/391 (29%), Positives = 179/391 (45%), Gaps = 38/391 (9%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEI--ETFDCTSFPTKIAAEIKSFSTDGW 223
+ + GM P +PD F+ NLLEG ISEI + +D + K+++ G
Sbjct: 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGG 61
Query: 224 --------------VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
++P+ ++ MD LL +AL D G + L S+ GV +
Sbjct: 62 FLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWEALEDAGYS---PESLAGSRTGVFV 118
Query: 270 GSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACAT 329
G+ D +E L +++ + + + ++ GP+ ++ TAC++
Sbjct: 119 GAS------SSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSS 172
Query: 330 SNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389
S + A + GE ++ L GG + + P GF LS P RP+D +
Sbjct: 173 SLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-----PDGRCRPFDAD 227
Query: 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY--HMTEPHPDGVGVILCI 447
DG+V GEG GV++L+ L A + G +IYA RG + D +T P + I
Sbjct: 228 ADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQ--AALI 285
Query: 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRG----LRVNSTKSMIGH 503
+A A +GV D++Y+ AH T TP GD E +AL FG +R L + S KS IGH
Sbjct: 286 RRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGH 345
Query: 504 LLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
L AAG I VV A+ G I PN++ E P
Sbjct: 346 LEAAAGLAGLIKVVLALEHGVIPPNLHFETP 376
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 4e-56
Identities = 108/384 (28%), Positives = 173/384 (45%), Gaps = 27/384 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGI--------SEIETFDCTSFPTKIAAEIK 216
VVVTG+G+VS +G F LL G + I AE+
Sbjct: 2 DEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELD 61
Query: 217 SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGM 276
S + + KL +R L A ++A D + +D + G+++G G
Sbjct: 62 SLALPERLDAKLLRRASLSAQAALAAAREAWRDAA-----LGPVDPDRIGLVVG----GS 112
Query: 277 KVFYDAIEALRISYKKMNPFCVP-FATTNMGS---AMLAMDLGWMGPNYSISTACATSNF 332
+ + +Y+ F P + + M + + + G G +++ A A+
Sbjct: 113 NLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIRGEGFTVGGASASGQL 172
Query: 333 CILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRAL-SQRN-NDPTKASRPWDINR 390
++ AA + G + + G+ + + A+ S R ++P A RP+D +R
Sbjct: 173 AVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDR 232
Query: 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKA 450
DGF+ GE G ++LE E A++RGA+ YA+ G S DA P P G + I A
Sbjct: 233 DGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANR--GPDPSLEGEMRVIRAA 290
Query: 451 LAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGA 510
L +G+ ED++Y+N H T +P GD E AL +N+TKS+ GH L AAG
Sbjct: 291 LRRAGLGPEDIDYVNPHGTGSPLGDETELAALFAS--GLAHAWINATKSLTGHGLSAAGI 348
Query: 511 VEAIAVVQAIRTGWIHPNINLENP 534
VE IA + +R G++HP+ NL+ P
Sbjct: 349 VELIATLLQMRAGFLHPSRNLDEP 372
|
Length = 410 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 2e-52
Identities = 123/379 (32%), Positives = 175/379 (46%), Gaps = 44/379 (11%)
Query: 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVA 225
+VVVTG+GLVS LG + LL+G SGI + F P I + +
Sbjct: 3 KVVVTGIGLVSALGDLEQS-WQRLLQGKSGIKLHQPF--PELPPLPLGLIGNQPSS---L 56
Query: 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI-- 283
L+K T AL D G+T + CGV+IGS G
Sbjct: 57 EDLTK----------TVVTAALKDAGLT------PPLTDCGVVIGSSRG-----CQGQWE 95
Query: 284 EALRISYKKMNPFCVPFATTN-------MGSAMLAMDLGWMGPNYSISTACATSNFCILN 336
+ R Y+ + N + A +G GP + ACAT + I
Sbjct: 96 KLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQGPVLAPMAACATGLWAIAQ 155
Query: 337 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396
I G+ ++ G +A + P+ L GF AL+ T A P+D R+G V+G
Sbjct: 156 GVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA-----KTGAY-PFDRQREGLVLG 209
Query: 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 456
EG +L+LE E A+KRGAKIY + G T DAYHM+ P PDG I I++ LA SG+
Sbjct: 210 EGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGL 269
Query: 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAV 516
+ ED++YI+AH T+T D +E + F V+STK GH LGA+GA+
Sbjct: 270 TPEDIDYIHAHGTATRLNDQREANLIQALFPHRVA--VSSTKGATGHTLGASGALGVAFS 327
Query: 517 VQAIRTGWIHPNINLENPD 535
+ A+R + P + L+ P+
Sbjct: 328 LLALRHQQLPPCVGLQEPE 346
|
Length = 381 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 1e-46
Identities = 99/301 (32%), Positives = 150/301 (49%), Gaps = 13/301 (4%)
Query: 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMN 294
+ A ++A+AD G++ E K+ ++ GG + + +
Sbjct: 11 VSILGFEAAERAIADAGLSR----EYQKNPIVGVVVGTGGG---SPRFQVFGADAMRAVG 63
Query: 295 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 354
P+ V A S +A LG GP Y +S ACA S + AA+ + G+ +++L GGS
Sbjct: 64 PYVVTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGS 123
Query: 355 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRG 414
+ P+ + P KASR +D DGFV G+GAG L++EELEHA RG
Sbjct: 124 EELAAPMDCEFDAMGALST-----PEKASRTFDAAADGFVFGDGAGALVVEELEHALARG 178
Query: 415 AKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAG 474
A IYAE G + T D M P G+ ++ALA +G++ D++Y+ AH T TP G
Sbjct: 179 AHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIG 238
Query: 475 DIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
D+KE + L FG V++TK+M G+L AA + V + G+I P+I++E
Sbjct: 239 DVKELKLLRSEFGDKS-PAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEEL 297
Query: 535 D 535
D
Sbjct: 298 D 298
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 1e-43
Identities = 110/384 (28%), Positives = 180/384 (46%), Gaps = 22/384 (5%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+R VVTG+G+V+P G + ++ +L+G SG+ I FD + +P ++A E+ F +
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+L + D+ L A ALAD G+ + D GV+ S GG + ++
Sbjct: 61 PGRLLPQTDRMTRLALAAADWALADAGVDPAALPPYD---MGVVTASAAGGFEFGQRELQ 117
Query: 285 ALRISYKKMNPFCVP------FATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 338
L + K F N G +++ G GP+ + A + A
Sbjct: 118 KL---WSKGPRHVSAYQSFAWFYAVNTGQ--ISIRHGMRGPSGVVVAEQAGGLDALAQAR 172
Query: 339 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398
+ RG +++ GG D+A+ P G ++ LS ++DP +A P+D G+V GEG
Sbjct: 173 RLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLS-TSDDPARAYLPFDAAAAGYVPGEG 230
Query: 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD-GVGVILCIEKALAHSGVS 457
+L+LE+ A++RGA++Y E G + T D P G+ I ALA +G++
Sbjct: 231 GAILVLEDAAAARERGARVYGEIAGYAATFDP----PPGSGRPPGLARAIRLALADAGLT 286
Query: 458 REDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVV 517
EDV+ + A A P D E AL FG RG+ V + K+M G L ++ +
Sbjct: 287 PEDVDVVFADAAGVPELDRAEAAALAAVFGP-RGVPVTAPKTMTGRLYAGGAPLDVATAL 345
Query: 518 QAIRTGWIHPNINLENPDAVVAID 541
A+R G I P +N+ + +D
Sbjct: 346 LALRDGVIPPTVNVTDVPPAYGLD 369
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-42
Identities = 96/285 (33%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 266 GVLIG---SGLG----GMKVFYDAIEAL--RISYKKMNPFCVPFATTNMGSAMLAMDLGW 316
GV++G SG+ + A AL Y + + + L LG
Sbjct: 98 GVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSL--------ADFLRAYLGL 149
Query: 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376
GP Y+ISTAC++S +A + G + + GG D+ + + L GF + +LS
Sbjct: 150 SGPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS--- 205
Query: 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
P RP+ NRDG +GE A LLE R G +SDA+HM+ P
Sbjct: 206 PQPC---RPFSANRDGINIGEAAAFFLLE-------REDDAAVALLGVGESSDAHHMSAP 255
Query: 437 HPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNS 496
HP+G+G IL +++ALA +G++ D+ YIN H T+TP D E +A+ FG G+ +S
Sbjct: 256 HPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGD--GVPCSS 313
Query: 497 TKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
TK + GH LGAAGAVEA A+R G N PD +
Sbjct: 314 TKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPL 358
|
Length = 392 |
| >gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-41
Identities = 52/119 (43%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 418 YAEFRGGSFTSD-AYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDI 476
YA RG + D A H P+G I ALA +G+ EDV+Y+ AH T TP GD
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 477 KEYQALIHCFGQNRG---LRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLE 532
E +AL FG R L V S KS IGHL AAG I V A+R G I P +NL+
Sbjct: 61 IEAEALKAVFGPGRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNLD 119
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 119 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 3e-35
Identities = 110/398 (27%), Positives = 179/398 (44%), Gaps = 38/398 (9%)
Query: 167 VVVTGMGLVSPLGHE-PDVFYNNLLEGVSGISEI--ETFDCTSF-------PTKIAAEIK 216
+ + GM P G + P+ F++ L EG I+E+ + +D ++ P K +
Sbjct: 6 IAIIGMACRFP-GADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWG 64
Query: 217 SFSTD---------GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
F D G ++P+ ++ MD LL +AL D GI D L S GV
Sbjct: 65 GFLDDVDDFDALFFG-ISPREAEAMDPQQRLLLEVAWEALEDAGIYPD---SLRGSATGV 120
Query: 268 LIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
G+ + + + + ++++ + ++ LG GP+ ++ TAC
Sbjct: 121 FAGASVAD--YLLLLLADDEAE----PEYAITGNSSSVAAGRISYVLGLSGPSVTVDTAC 174
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
++S + A + GE ++ L GG + + P F A LS P + +D
Sbjct: 175 SSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFD 229
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCI 447
+ DG+V GEGAGV++L+ L A++ G +IYA RG + D P+ I
Sbjct: 230 ADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVI 289
Query: 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRG---LRVNSTKSMIGHL 504
+ALA +G+ V Y+ AH T TP GD E AL +G+ + S KS IGHL
Sbjct: 290 REALADAGIDPATVQYVEAHGTGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHL 349
Query: 505 LGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542
AAG I A++ G+I P ++ + P+ + DS
Sbjct: 350 EAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDS 387
|
Length = 1061 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-29
Identities = 76/272 (27%), Positives = 108/272 (39%), Gaps = 49/272 (18%)
Query: 275 GMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM------LAMDLGWM-GPNYSISTAC 327
G + AI +S + V TT LA LG GP YS++ AC
Sbjct: 11 GFEAAEQAIADAGLSKGPIVGVIV--GTTGGSGEFSGAAGQLAYHLGISGGPAYSVNQAC 68
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
AT + A + G+A+++L GGS+
Sbjct: 69 ATGLTALALAVQQVQNGKADIVLAGGSEE------------------------------- 97
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCI 447
FV G+GA ++E EHA +RGA AE + T D M P G G+
Sbjct: 98 -----FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASM-VPAVSGEGLARAA 151
Query: 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGA 507
KAL +G++ D++Y+ AH T TP GD E + G R V++T M GH LGA
Sbjct: 152 RKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGV-RSPAVSATLIMTGHPLGA 210
Query: 508 AGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539
AG ++ + +I P P V+
Sbjct: 211 AGLAILDELLLMLEHEFIPP--TPREPRTVLL 240
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 8e-23
Identities = 95/350 (27%), Positives = 151/350 (43%), Gaps = 48/350 (13%)
Query: 226 PKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK-------- 277
P + + D L L K+ L D G+ + D+ K G+ +G G GG K
Sbjct: 84 PNILELTDISQLLSLVVAKEVLNDAGLPDG----YDRDKIGITLGVG-GGQKQSSSLNAR 138
Query: 278 --------VFYDA----------IEALRISYKKMNPFCVPFATTNMGSAMLA--MDLGWM 317
VF + I+ + Y P + N+ S +A DLG
Sbjct: 139 LQYPVLKKVFKASGVEDEDSEMLIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLG-- 196
Query: 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNN 377
G N + ACA S I A + ++ G + +M+ GG P F A +
Sbjct: 197 GMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT--- 253
Query: 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT--E 435
+ +P+DI+ G ++GEG G++ L+ LE A++ G +IYA +G +SD +
Sbjct: 254 --NEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYA 311
Query: 436 PHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN----RG 491
P P+G L ++A +G + I AH T T AGD+ E+ L+ F Q+ +
Sbjct: 312 PRPEGQAKAL--KRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQH 369
Query: 492 LRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
+ + S KS IGH AG I V A+ + P IN++ P+ + I+
Sbjct: 370 IALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQPNPKLDIE 419
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 83.1 bits (207), Expect = 1e-17
Identities = 62/220 (28%), Positives = 88/220 (40%), Gaps = 55/220 (25%)
Query: 317 MGPNYSIS--TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ 374
+YS++ TAC++S + A + GE ++ L GG + + P G LS
Sbjct: 85 SSSDYSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGMLS- 143
Query: 375 RNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT 434
P + +D + DG+V GEG GV++L+ L A + G I
Sbjct: 144 ----PDGRCKTFDASADGYVRGEGVGVVVLKRLSDALRDGDPIL---------------- 183
Query: 435 EPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRV 494
VI A+ G S N I A P+G Q L +
Sbjct: 184 -------AVIR--GSAVNQDGRS----NGITA-----PSGP-----------AQ---LLI 211
Query: 495 NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
S KS IGHL AAG I VV A++ G I P ++ E P
Sbjct: 212 GSVKSNIGHLEAAAGVAGLIKVVLALKHGVIPPTLHFETP 251
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 48/322 (14%), Positives = 87/322 (27%), Gaps = 106/322 (32%)
Query: 227 KLSKRMDK-FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEA 285
+R D+ + A + AL D G+ I+A
Sbjct: 7 PFGRRSDRSPLELAAEAARAALDDAGLE--------------------------PADIDA 40
Query: 286 LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGE 345
+ + + G+ + P + A A+ + + AA I G
Sbjct: 41 VVVGN-----AAGGRFQSFPGALIAEYLGLLGKPATRVEAAGASGSAAVRAAAAAIASGL 95
Query: 346 ANVMLCGGSDA--------------------------AVIPIGLGGFVACR--------- 370
A+V+L G++ + P L A R
Sbjct: 96 ADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYMHRYGTTR 155
Query: 371 ------ALSQRNN---------------DPTKASRP-------WDINRDGFVMGEGAGVL 402
A+ N + SR D + +GA +
Sbjct: 156 EDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLRLLDCC----PVSDGAAAV 211
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGV--GVILCIEKALAHSGVSRED 460
+L E A++ + G SD ++E L +A +G++ +D
Sbjct: 212 VLASEERARELTDR-PVWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDD 270
Query: 461 VNYINAHATSTPAGDIKEYQAL 482
++ + T I E AL
Sbjct: 271 IDVAELYDCFT----IAELLAL 288
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. Length = 375 |
| >gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 336 NAANHIIRGEANVMLCGGSDAA-----VIPIGLGGFVA---CRALSQRNNDPTKASRPWD 387
A I G+++ L GG+ A ++ LGG + + R +
Sbjct: 184 IAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGEDG------- 236
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420
GF++G G L+LE EHA+ RGA+ YA
Sbjct: 237 ---GGFILGSGGAFLVLESREHAEARGARPYAR 266
|
Length = 398 |
| >gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSD-AAVIPIGL 363
YS+S ACATS + N A I+ G ++ + GG+D ++V+PIG+
Sbjct: 85 YSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGV 128
|
Length = 428 |
| >gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVS 457
GA +LL E AK+ G K A G + +P G+G + I KAL +G++
Sbjct: 247 GAAAVLLMSEEKAKELGLKPLARIVGYAVAGV-----DPAIMGIGPVPAIPKALKRAGLT 301
Query: 458 REDVNYI 464
+D++ I
Sbjct: 302 LDDIDLI 308
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. Length = 386 |
| >gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 23/134 (17%)
Query: 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHS 454
+GAG ++L + K+ A F SF P G+G I I AL +
Sbjct: 256 TSDGAGAVILVSEKALKQFNLTPLARFV--SFAVAG---VPPEIMGIGPIEAIPAALKQA 310
Query: 455 GVSREDVNYIN---AHATSTPAGDIKEYQAL--IHCFGQNRGLRVNSTKSMI--GHLLGA 507
G+ ++D+++I A A Q+L I G + +VN I GH LGA
Sbjct: 311 GLKQDDLDWIELNEAFAA----------QSLAVIRDLGLDPS-KVNPLGGAIALGHPLGA 359
Query: 508 AGAVEAIAVVQAIR 521
GA+ VV +R
Sbjct: 360 TGAIRTATVVHGLR 373
|
Length = 399 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 100.0 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 100.0 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 100.0 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 100.0 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.95 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.93 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.92 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 99.91 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.91 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.91 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.91 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.9 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.9 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.9 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.9 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.9 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.9 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.89 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.89 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.88 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.88 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.88 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.88 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 99.88 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 99.86 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.86 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 99.86 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 99.85 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 99.85 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 99.85 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.85 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.84 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 99.84 | |
| PRK06158 | 384 | thiolase; Provisional | 99.84 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.83 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 99.82 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.82 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 99.81 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 99.81 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.81 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.79 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 99.76 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.75 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.74 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 99.74 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 99.74 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.74 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.72 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 99.7 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 99.69 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.69 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.68 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.68 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.67 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.66 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 99.61 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 99.6 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 99.55 | |
| PRK06840 | 339 | hypothetical protein; Validated | 99.52 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 99.52 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 99.5 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 99.46 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 99.43 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.42 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 99.39 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 99.36 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 99.36 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 99.35 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 99.35 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 99.34 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.31 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 99.29 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 99.24 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 99.23 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 99.18 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 99.17 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 99.09 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 99.01 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 98.98 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 98.95 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 98.91 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 98.86 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 98.86 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 98.8 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 98.79 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 98.72 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 98.41 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 98.37 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 98.22 | |
| PF00195 | 226 | Chal_sti_synt_N: Chalcone and stilbene synthases, | 97.91 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 97.85 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 97.82 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 97.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 96.5 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 92.82 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 90.23 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 81.55 | |
| smart00823 | 86 | PKS_PP Phosphopantetheine attachment site. Phospho | 80.6 |
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-88 Score=730.18 Aligned_cols=505 Identities=80% Similarity=1.253 Sum_probs=436.8
Q ss_pred CCcCcccchhhHHHHHHhhhcccCCCCCCCCCcccccccCcccccchHHHHhhhhccccCCCcccCCccccccCCCchhh
Q 008700 2 ASSCSFTSPLCTWLVAACMSFTCGSRDPHQPPSVLRRYTNNKREGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGSSHSI 81 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (557)
|+++++++|||||||+||||++|+++.++.... .+.++|.+|||++...|+ ..+.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------------~~~~~~ 57 (540)
T PLN02787 1 MASASAASPLCTWLVAACMSVSCAGEDAHQAVA--------LQSGGRSRRRRKRRKCSS---------------ASGSAS 57 (540)
T ss_pred CcccccchhHHHHHHHHHhhhhhccCCCccccc--------cccccccchhhhhhhhcc---------------ccccch
Confidence 688999999999999999999999877744332 133443222222211122 135566
Q ss_pred HHhhhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHhhhhcccccccccccccCCCCccccccCCCC
Q 008700 82 QSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPH 161 (557)
Q Consensus 82 ~~~~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (557)
+++ .+++..|+|+.++.. ||++ ...+|+.+... ..+++++ ..+....++.+++..+|.....+.+.+.
T Consensus 58 ~~~-~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (540)
T PLN02787 58 ILV-TSCLAFGPCTHYNSS-----GGNA--LSSLFGSNSVS--LNRNQRR--RNRAARSGKAMAVAVQPEKEVETKKKPL 125 (540)
T ss_pred hhc-cchhcccchhhcccc-----cccc--ccccccCCCcc--ccccccc--ccccCCCcccceeccCcccccccccCCC
Confidence 544 335556999988877 2222 22346665433 4555555 5666677777777777765555554554
Q ss_pred CCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHH
Q 008700 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (557)
Q Consensus 162 ~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~ 241 (557)
++.++|||||||+++|.|.++++||++|.+|+++|+++++|+...++.++.+++++|+.+.++++++.++||+++++++.
T Consensus 126 ~~~~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~ 205 (540)
T PLN02787 126 TKQRRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLT 205 (540)
T ss_pred CCCCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHH
Confidence 56689999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCCCee
Q 008700 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (557)
Q Consensus 242 aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~ 321 (557)
++++||+|||++++.++.+++.|+||++|+..+++..+.++++.+...+.+++|+.++..+.|+.++++++.||++||++
T Consensus 206 Aa~eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~Gp~~ 285 (540)
T PLN02787 206 AGKKALADGGITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 285 (540)
T ss_pred HHHHHHHHcCCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCCCCcc
Confidence 99999999999865444567889999999999998888887777776777889999999999999999999999999999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
+|+++|+|++.||..|+++|++|++|+|||||+|..++|..+.+|..++.|+..+.+|++.|||||.++|||++|||+++
T Consensus 286 tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GEGAa~ 365 (540)
T PLN02787 286 SISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGV 365 (540)
T ss_pred ccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCcccccceEE
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHH
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~A 481 (557)
+|||++++|+++|++||++|+|++.++|++|++.|+|++.++.++|++||+++|++|+||||||+|||||+.+|..|.++
T Consensus 366 lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~~AGl~p~dIdyInaHGTGT~~gD~~E~~A 445 (540)
T PLN02787 366 LLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQA 445 (540)
T ss_pred EEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHHHCcEEEccCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 482 LIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 482 l~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
|.++|+...+++|+++|+++||++||+|++++++++++|++++||||+|+++|++.++++
T Consensus 446 i~~~Fg~~~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal~~g~iPPt~n~~~pd~~~~~~ 505 (540)
T PLN02787 446 LMRCFGQNPELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVDTK 505 (540)
T ss_pred HHHHhCCCCCceeeCCCCCcCCCcccchHHHHHHHHHHHhcCCcCCCCCCCCCCccCCcc
Confidence 999999765689999999999999999999999999999999999999999999999765
|
|
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-81 Score=610.72 Aligned_cols=385 Identities=52% Similarity=0.818 Sum_probs=371.1
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
+++|||||||+++|+|.++.++|++|.+|+++|+.++.++.+.+|..+.+.|+.|+.+.|+++...++|+++.+|++.++
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHH-hhhccCCCccccccccchhHHHHHHhhCCCCCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~-~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~t 322 (557)
.|||+|+++.+..+++.+..++||.+|+.++++..+++..+.+. .++++++|+++|..+.|+.++++++.+||+||+.+
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~Gpnhs 182 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRGPNHS 182 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCcCCchh
Confidence 99999999998777788999999999999999999888777774 55999999999999999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
++|+|++|..+|..|.+.|+.|++|++|+||+|..++|..+.+|.+++.|++++++|...+||||.++||||+|||+|++
T Consensus 183 vSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmGEGagvl 262 (440)
T KOG1394|consen 183 VSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMGEGAGVL 262 (440)
T ss_pred hHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceeeccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHH
Q 008700 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQAL 482 (557)
Q Consensus 403 vLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al 482 (557)
|||++|+|++||++||++|.|++.++|.+|++.|+|++.+...||+++|++||+.|+|||||++|+|+|++||..|.+|+
T Consensus 263 vlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~~Agl~pe~i~YvNAHATST~~GD~aE~~Ai 342 (440)
T KOG1394|consen 263 VLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDAGLSPEDIDYVNAHATSTPLGDAAEAEAI 342 (440)
T ss_pred ehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHHHcCCChhhcCeeecccccCcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCc-ccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccC
Q 008700 483 IHCFGQNRGL-RVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGHECAC 548 (557)
Q Consensus 483 ~~~~~~~~~~-~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~~~~~ 548 (557)
+++|++.... .|+|.|+.|||++||+|.++.+.++++++++++|||+|+++||+.+|++.-++-..
T Consensus 343 ~~vf~~~~~~~~vsStKgaiGHLLGAAGavEAi~Tv~ai~~~~lpptlNlen~d~~~d~~~~~~~~~ 409 (440)
T KOG1394|consen 343 KRVFGEHNIASKVSSTKGAIGHLLGAAGAVEAIFTVLAINDGVLPPTLNLENPDPGVDLDYVPLKAS 409 (440)
T ss_pred HHHhccCCcccccccccchhhhhcccccchhhHhhhhhhhcCccCCcccccCCCccccccccccccc
Confidence 9999976433 79999999999999999999999999999999999999999999888887666555
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=584.72 Aligned_cols=377 Identities=46% Similarity=0.776 Sum_probs=353.8
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHH
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~a 242 (557)
+.++|||||||+++|.|.++++||++|.+|+++|+++++|+...++..+++++++||++.|+++++.++||+++++++.+
T Consensus 2 ~~~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a 81 (414)
T PRK08722 2 SKRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAA 81 (414)
T ss_pred CCCCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHH
Confidence 34689999999999999999999999999999999999999888989999999999998889999999999999999999
Q ss_pred HHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCee
Q 008700 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (557)
Q Consensus 243 a~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~ 321 (557)
+++||+|||++++ ..+..|+||++|++.+++....++++.+ ......++|+.++..+.|.+++++++.||++||++
T Consensus 82 ~~~Al~dAGl~~~---~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~Gp~~ 158 (414)
T PRK08722 82 GIQALDDSGLEVT---EENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLRGPNI 158 (414)
T ss_pred HHHHHHHcCCCcc---ccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCCCCcc
Confidence 9999999999764 4567899999999999888777766655 34456788899999999999999999999999999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
+|+++|+|++.||..|+++|++|++|+|||||+|...++..+.+|..++.|+..+.+|+..|||||.+++||++|||+++
T Consensus 159 ti~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGaaa 238 (414)
T PRK08722 159 AISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGM 238 (414)
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceEEE
Confidence 99999999999999999999999999999999999999999999999999987777789999999999999999999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHH
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~A 481 (557)
+|||++++|+++|++||++|+|++.++|+++.+.|.+.+.+..++|+++|+++|++|+||||||+|||||+.+|..|.++
T Consensus 239 lvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~a 318 (414)
T PRK08722 239 MVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKG 318 (414)
T ss_pred EEEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHcCCCHHHcCEEEccCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHHHhcCC--CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 482 LIHCFGQN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 482 l~~~~~~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
|+++|+.. .+++|++.|+++||+++|||++++++++++|++++|||++|+++|+|.++++.
T Consensus 319 l~~~fg~~~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~~~ 381 (414)
T PRK08722 319 IKRALGEAGSKQVLVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDIDL 381 (414)
T ss_pred HHHHhcccCCCCceeeCcccccccchHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCccc
Confidence 99999863 46899999999999999999999999999999999999999999999987764
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=573.25 Aligned_cols=376 Identities=45% Similarity=0.739 Sum_probs=349.0
Q ss_pred CCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccC--------CCCCCCCChhhhccCC
Q 008700 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS--------FSTDGWVAPKLSKRMD 233 (557)
Q Consensus 162 ~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~--------fd~~~~i~p~~~~~md 233 (557)
|.+++|+|||||+++|.|.++++||++|++|++++++++.+++..++..+.+++++ ||++.|+++++.++||
T Consensus 1 m~~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~fd~~~~i~~~~~~~~d 80 (424)
T PRK06333 1 MNKKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGFDPDRYLDPKDQRKMD 80 (424)
T ss_pred CCCCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCCCceEEEeccccccccccCChhHcCCHHHHhhcC
Confidence 34678999999999999999999999999999999999998888888888888887 8888889999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHH
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
++++|++.++++||+|+|++++.+ .+..++|||+|+..+++....+++..+ ......++|+.++..+.|.++++|++
T Consensus 81 ~~~~l~~~aa~~Al~dAgl~~~~~--~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~ 158 (424)
T PRK06333 81 RFILFAMAAAKEALAQAGWDPDTL--EDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSI 158 (424)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccc--CCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHH
Confidence 999999999999999999987532 156899999999998887776666555 34455678888888999999999999
Q ss_pred hhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCCCC
Q 008700 313 DLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRD 391 (557)
Q Consensus 313 ~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~~d 391 (557)
.|||+||+++|+++|+||+.||+.|+++|++|++|++||||+|.++++..+..|..++.++.. +.+|+..|+|||.+++
T Consensus 159 ~~gl~Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~~~~ 238 (424)
T PRK06333 159 RYGFKGPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRD 238 (424)
T ss_pred HhCCCCCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999888899999988865 5678889999999999
Q ss_pred CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCC
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATST 471 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt 471 (557)
|+++|||++++|||++++|+++|++||++|+|++.++|+++.+.+.+++.++.++|++||+++|++|+||||||+|||||
T Consensus 239 G~~~gEGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agi~p~dId~i~~hgtgt 318 (424)
T PRK06333 239 GFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQAGIPPEEVQHLNAHATST 318 (424)
T ss_pred CeEEecceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEeccCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 008700 472 PAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539 (557)
Q Consensus 472 ~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~ 539 (557)
+.+|..|.++|+++|+...++++++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++
T Consensus 319 ~~~D~~E~~al~~~fg~~~~~~v~s~K~~~GH~~gAaG~~~~~~~~l~l~~g~ipp~~~~~~~~~~~~ 386 (424)
T PRK06333 319 PVGDLGEVAAIKKVFGHVSGLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLNLENPDPAAE 386 (424)
T ss_pred ccchHHHHHHHHHHhCCCCCceeECcccchhhhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCcc
Confidence 99999999999999996567899999999999999999999999999999999999999999999887
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-68 Score=557.51 Aligned_cols=373 Identities=49% Similarity=0.779 Sum_probs=347.3
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
+++|||||+|+++|.|.+.+++|++|..|++++..++.|+...++..+.+++++| +.++.+++.++||+.++|++.++
T Consensus 2 ~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~d~~~~~a~~Aa 79 (412)
T COG0304 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQIAKKERRFMDRFSQLAVVAA 79 (412)
T ss_pred CceEEEecceeeecccCCHHHHHHHHhcCCCCCCccccccccCCCCccccccccc--ccccchHHhhcccHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999988 55578888889999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHH-HHHHhhhcc-CCCccccccccchhHHHHHHhhCCCCCee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI-EALRISYKK-MNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~-~~l~~~~~~-~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~ 321 (557)
.+||+|||++.+ ..... |+||++|++.+++...+... ..+....++ ++|+.++..+.|+.++.+++.+|++||++
T Consensus 80 ~eAl~dAgl~~~--~~~~~-r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~~g~~G~~~ 156 (412)
T COG0304 80 VEALEDAGLDNE--LNVDM-RVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNY 156 (412)
T ss_pred HHHHHHcCCCcc--cccCc-cEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHHhCCCCCcC
Confidence 999999999832 12233 99999999999998776533 333355555 89999999999999999999999999999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
++.++|+||..||..|++.|+.|++|+|||||+|..+++..+.+|..++.|+..+++|...|||||.++||||+|||+|+
T Consensus 157 ~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~~RdGfv~gEGag~ 236 (412)
T COG0304 157 TPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKNRDGFVIGEGAGA 236 (412)
T ss_pred ChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCCCCCCEEEecceeE
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHH
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~A 481 (557)
+|||++++|++||++||++|.|++.++|++|++.|.|++.+..++|+.||+++|++++|||||++|||+|+.||..|..+
T Consensus 237 lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~a 316 (412)
T COG0304 237 LVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLA 316 (412)
T ss_pred EEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHHHHcCCCHhHCCEEeCCCccCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC-CCCC
Q 008700 482 LIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAV-VAID 541 (557)
Q Consensus 482 l~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~-~~~~ 541 (557)
|+++|+.. ..++|.+.|+++||++||+|+++++.++++|+++++|||+|+++|||+ ++++
T Consensus 317 i~~vfg~~~~~~~vsstKs~tGH~lGAaGaveai~~~l~l~~g~ippt~n~~~~dp~~~~l~ 378 (412)
T COG0304 317 IKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEAADLD 378 (412)
T ss_pred HHHHhcccccCceeeecccccccChhhHHHHHHHHHHHHHhcCCcCCCCCcCCCCccccccc
Confidence 99999975 358899999999999999999999999999999999999999999986 3343
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-69 Score=624.75 Aligned_cols=376 Identities=28% Similarity=0.454 Sum_probs=341.8
Q ss_pred cEEEEecceeccCCCCHHHHHHHHHcCCCcceecc--CCCCCCCC-----------cccccc---ccCCCCCCC-CChhh
Q 008700 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTSFP-----------TKIAAE---IKSFSTDGW-VAPKL 228 (557)
Q Consensus 166 ~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~--~~~~~~~~-----------~~~~g~---i~~fd~~~~-i~p~~ 228 (557)
+|+|+||+|+||+.+++++||++|.+|+++|++++ +||+..+. .+.+++ ++.||+.|| |+|+|
T Consensus 5 ~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~~~gk~~~~~ggfl~~~~~FD~~fFgisPrE 84 (1061)
T COG3321 5 PIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGFLDDVDDFDALFFGISPRE 84 (1061)
T ss_pred cEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccccccccccccccccCCccccCHHHcCCCHHH
Confidence 49999999999999999999999999999999994 46665542 234454 457999999 99999
Q ss_pred hccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHH
Q 008700 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (557)
Q Consensus 229 ~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~ 308 (557)
+..|||||||+|+++|+|||||||+++ .+.++++|||+|.+..++...... .. ....++...++..+++++
T Consensus 85 A~~mDPQqRllLe~aw~AlEdAG~~~~---~l~g~~tgV~~g~~~~~y~~~~~~-----~~-~~~~~~~~~g~~~~~~a~ 155 (1061)
T COG3321 85 AEAMDPQQRLLLEVAWEALEDAGIYPD---SLRGSATGVFAGASVADYLLLLLA-----DD-EAEPEYAITGNSSSVAAG 155 (1061)
T ss_pred HHhcCchHhHHHHHHHHHHHHcCCCcc---ccCCcceEEEEeeccCcccccccc-----cc-ccccceecccchhhHHHH
Confidence 999999999999999999999999997 667799999999987665432210 01 134566667778889999
Q ss_pred HHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 309 ~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
|||+.|+|+||+++|+++|+|+++|+|+|+++|+.|+||++|+||++...+|.....|++.++|+ |++.|++||.
T Consensus 156 Risy~l~l~GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls-----~~g~c~~fd~ 230 (1061)
T COG3321 156 RISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS-----PDGRCKAFDA 230 (1061)
T ss_pred HHHHHhcCCCCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC-----CCCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHA 468 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hg 468 (557)
++|||+.|||++++||+++++|+++|++||++|+|.++++||.......|+..++..+++++|+++||+|++|+|||+||
T Consensus 231 ~adG~v~geG~g~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~~aQ~~v~~~al~~a~i~p~tv~yvEaHg 310 (1061)
T COG3321 231 DADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQYVEAHG 310 (1061)
T ss_pred CCCCEEEeeeEEEEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCHHHHHHHHHHHHHhcCCCcccCcEEEecC
Confidence 99999999999999999999999999999999999999999987788889999999999999999999999999999999
Q ss_pred CCCccCcHHHHHHHHHHhcCC---CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCcc
Q 008700 469 TSTPAGDIKEYQALIHCFGQN---RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGHE 545 (557)
Q Consensus 469 tgt~~~D~~E~~Al~~~~~~~---~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~~ 545 (557)
|||++||++|+++|..+|+.. .+|.++|+|+||||++.|+|+++++|++++|+|+++||++|+++|+|.++|+.++|
T Consensus 311 TGT~lGDpiE~~aL~~v~~~~~~~~~c~iGSvKsNiGH~~~AaGiagliK~~Lal~~~~ip~~l~~~~~np~i~~~~sp~ 390 (1061)
T COG3321 311 TGTPLGDPIEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSPF 390 (1061)
T ss_pred CCCCCcCHHHHHHHHHHhccCCCCCcccccccccccccHHHHHHHHHHHHHHHhhhcCccCCcCCCCCCCcCCccccCCe
Confidence 999999999999999999843 47899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccc
Q 008700 546 CACGPKERET 555 (557)
Q Consensus 546 ~~~~~~~~~~ 555 (557)
+++-..++|+
T Consensus 391 ~v~~~~~~W~ 400 (1061)
T COG3321 391 VVPTEATPWP 400 (1061)
T ss_pred EeecCCcCCC
Confidence 9995555554
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=560.33 Aligned_cols=369 Identities=28% Similarity=0.468 Sum_probs=340.9
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|||||||+++|.|.++++||++|.+|+++|+++++|+...++....+++++|+.++++++++.++||++++|++.+++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 80 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAAD 80 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccccccCCCceeEEeCCcChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999988888888899999998888999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv 323 (557)
+||+|||++++ .+++.|+||++|+..+++...+..+..+ ......++++.++..+.+..+++|++.||++||+++|
T Consensus 81 eAl~dAGl~~~---~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~ti 157 (399)
T cd00832 81 WALADAGVDPA---ALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVV 157 (399)
T ss_pred HHHHHcCCCcc---ccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhCCCCCcccc
Confidence 99999999875 4567899999999998887666666554 3345667788778888889999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||..|+++|++|+ |++||||+|..++|..+..|..++.|+. ..+|...|||||.+++||++|||++++|
T Consensus 158 ~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~-~~~p~~~~rPFd~~~~G~~~gEGa~~lv 235 (399)
T cd00832 158 VAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLST-SDDPARAYLPFDAAAAGYVPGEGGAILV 235 (399)
T ss_pred cchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCC-CCCCCCCcCCCcCCCCCEeeeceEEEEE
Confidence 9999999999999999999999 9999999999999999999999999875 4557889999999999999999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~ 483 (557)
||++++|+++|++||++|.|++.++|+++.. +.+.++.++|+++|+++|++++|||||++|||||+.+|..|.++|+
T Consensus 236 Le~~~~A~~rg~~i~a~i~g~~~~~d~~~~~---~~~~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~~E~~al~ 312 (399)
T cd00832 236 LEDAAAARERGARVYGEIAGYAATFDPPPGS---GRPPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALA 312 (399)
T ss_pred EeeHHHHHHCCCeEEEEEEeEEEcCCCCCCC---CCHHHHHHHHHHHHHHcCCCHHHccEEEeccCcCCCCCHHHHHHHH
Confidence 9999999999999999999999999988753 2478899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 484 HCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 484 ~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
++|+.. .++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|+++++.
T Consensus 313 ~~fg~~-~~pv~s~K~~~Gh~~~aaG~~~l~~~~l~l~~~~ipp~~n~~~~~p~~~l~~ 370 (399)
T cd00832 313 AVFGPR-GVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAYGLDL 370 (399)
T ss_pred HHhCCC-CCceeCCCchhcchHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCccc
Confidence 999865 5789999999999999999999999999999999999999999999887653
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-67 Score=557.39 Aligned_cols=371 Identities=33% Similarity=0.547 Sum_probs=339.0
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCC--CCCCCcccccccc-CCCCCCCCChhhhccCCHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIK-SFSTDGWVAPKLSKRMDKFMLYLL 240 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~--~~~~~~~~~g~i~-~fd~~~~i~p~~~~~md~~~rl~l 240 (557)
+++|||||||+++|.|.+.++||++|.+|+++|++++.++ ...++.++++.+. +|| .++++++.++|||++++++
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d--~~~~~~~~~~~d~~~~~~l 88 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFD--HQLTRVELRRMSYLQRMST 88 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCcc--ccCCHHHHhhccHHHHHHH
Confidence 4789999999999999999999999999999999987653 2346667777774 444 3488999999999999999
Q ss_pred HHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCC
Q 008700 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (557)
Q Consensus 241 ~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp 319 (557)
.++++||+|||++ ..++.|+||++|+..++.....+++..+ ..+...++|+.++..+.|..+.++++.++++||
T Consensus 89 ~aa~~AledAg~~-----~~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~G~ 163 (418)
T PRK07910 89 VLGRRVWENAGSP-----EVDTNRLMVSIGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAKAG 163 (418)
T ss_pred HHHHHHHHHcCCC-----CCCcccEEEEEEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCCCC
Confidence 9999999999985 3456899999999998887776666655 344556778888888999999999999999999
Q ss_pred eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhh-hhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRA-LSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 320 ~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~-Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
+++|+++|+|++.||++|+++|++|+||++||||+|..+++..+..|..++. ++..+.+|++.|||||.+++||++|||
T Consensus 164 ~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gEG 243 (418)
T PRK07910 164 VITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG 243 (418)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeece
Confidence 9999999999999999999999999999999999999999999999999998 876667789999999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHH
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKE 478 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E 478 (557)
++++|||++++|+++|++||++|+|++.++|+++...|.|.+.++.++|+++|+++|++++||||||+|||||+.+|..|
T Consensus 244 aa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E 323 (418)
T PRK07910 244 GALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAE 323 (418)
T ss_pred EEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 479 YQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 479 ~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
.++|+++|+.. .+++++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++++.
T Consensus 324 ~~Al~~~fg~~-~~~v~s~K~~~GH~~~AaG~~~li~~~l~l~~~~ipp~~n~~~~~p~~~l~~ 386 (418)
T PRK07910 324 GKAINNALGGH-RPAVYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEIDLDV 386 (418)
T ss_pred HHHHHHHhCCC-CCceeCccccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCccc
Confidence 99999999964 3568999999999999999999999999999999999999999999998775
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=645.46 Aligned_cols=383 Identities=25% Similarity=0.405 Sum_probs=340.1
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceecc--CCCCCCC-----------Ccccccccc--CCCCCCC-CCh
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTSF-----------PTKIAAEIK--SFSTDGW-VAP 226 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~--~~~~~~~-----------~~~~~g~i~--~fd~~~~-i~p 226 (557)
++++|+||||||++|++.++++||++|.+|+++|++++ +|+...| +.+.+++++ +||+.+| |+|
T Consensus 5 ~~~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~~~~~~~~~ggfl~~v~FD~~~F~i~p 84 (2582)
T TIGR02813 5 KDMPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVDFNPMEFGLPP 84 (2582)
T ss_pred CCCCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccccccCCcccceeEecCccCCCHhhcCCCH
Confidence 45789999999999999999999999999999999885 5655443 345677776 5888888 999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHH---------------------HHHHH
Q 008700 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY---------------------DAIEA 285 (557)
Q Consensus 227 ~~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~---------------------~~~~~ 285 (557)
++++.|||+|+|+|+++++||+||||.. .++++|||||+|++.+...... ...+.
T Consensus 85 ~ea~~mDpqqrl~L~~a~eALedAG~~~----~~~~~r~GV~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (2582)
T TIGR02813 85 NILELTDISQLLSLVVAKEVLNDAGLPD----GYDRDKIGITLGVGGGQKQSSSLNARLQYPVLKKVFKASGVEDEDSEM 160 (2582)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhCCCCC----CCCCCCEEEEEEECCCcccchhhhhhhcchhhhhhhhccccchhhHHH
Confidence 9999999999999999999999999975 3578999999998766432100 00111
Q ss_pred H----HhhhccCCCccccccccchhHHHHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh
Q 008700 286 L----RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361 (557)
Q Consensus 286 l----~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~ 361 (557)
+ ...+...+++.+++.+.|++++||++.|||+||+++|+++|+||+.||++|+++|++|+||++||||+|...+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~n~~A~RIS~~f~L~Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~p~ 240 (2582)
T TIGR02813 161 LIKKFQDQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPF 240 (2582)
T ss_pred hhhhhcccccccCccccccccccHHHHHHHHHhCCCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCCHH
Confidence 1 122334566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChH
Q 008700 362 GLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGV 441 (557)
Q Consensus 362 ~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~ 441 (557)
.+..|.+.+.|+ +++.|||||.++|||++|||+|++|||++++|+++|++||++|+|++.++||+......|+..
T Consensus 241 ~~~~fs~~~~lS-----~~g~crpFD~~adG~v~GEGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP~~~ 315 (2582)
T TIGR02813 241 MYMSFSKTPAFT-----TNEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPE 315 (2582)
T ss_pred HHHHHHhccCcC-----CCCCccCCCCCCCcccccceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCCCHH
Confidence 999999999998 678899999999999999999999999999999999999999999999999986666677788
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC----CCcccccCcccccchhhhHHHHHHHHHH
Q 008700 442 GVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN----RGLRVNSTKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 442 ~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~----~~~~v~s~K~~iGH~~gAaG~~~li~~~ 517 (557)
++.++|+++|+++|++|+||+|||+|||||+.||++|.++|.++|+.. .+++|+|+|++|||+++|||++++|+++
T Consensus 316 gq~~~i~~Al~~Agi~p~~I~yIeaHGTGT~~gD~~E~~Al~~vf~~~~~~~~~~~vgSvKs~iGH~~~AAG~a~lik~~ 395 (2582)
T TIGR02813 316 GQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKAV 395 (2582)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEecCCCCCCCCHHHHHHHHHHhcccccCCCCceeeccccccccchHhHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999853 3689999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCCCCCCCCCCccccCCCCccc
Q 008700 518 QAIRTGWIHPNINLENPDAVVAIDSGHECACGPKERE 554 (557)
Q Consensus 518 ~~l~~~~lpp~~~~~~p~~~~~~~~~~~~~~~~~~~~ 554 (557)
++|+|+++||++|+++|+|.++++.++|+++-...+|
T Consensus 396 lal~~~~iPp~~~~~~pnp~~~~~~~~~~v~~~~~pw 432 (2582)
T TIGR02813 396 LALHHKVLPPTINVDQPNPKLDIENSPFYLNTETRPW 432 (2582)
T ss_pred HHHhcCCcCCCCCCCCCCCCCCccccceeecCCcccC
Confidence 9999999999999999999999999999988433333
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=555.78 Aligned_cols=375 Identities=51% Similarity=0.832 Sum_probs=350.1
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
|++|+|||||+++|.|.++++||++|++|+++++++++|+...++..+.+++++||++.|+++++.++|||+++|+++++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHH-hhhccCCCccccccccchhHHHHHHhhCCCCCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~-~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~t 322 (557)
++||+|||++++ ++++.++||++|+..++.....+++..+. .....++|+.++..+.|..++++++.||++||+++
T Consensus 81 ~~Al~dAGl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (411)
T PRK07314 81 KQAVEDAGLEIT---EENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAKGPNHS 157 (411)
T ss_pred HHHHHHcCCCcc---cCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCCCcccc
Confidence 999999999876 55678999999999988887777776653 34456777878888889999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+++|+|++.||..|+++|++|++|++||||+|.++++..+.+|..++.++....+|+..|+|||.++||+++|||++++
T Consensus 158 v~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGAaav 237 (411)
T PRK07314 158 IVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGAGIL 237 (411)
T ss_pred chhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceEEEE
Confidence 99999999999999999999999999999999998999988999999999876667888999999999999999999999
Q ss_pred EEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHH
Q 008700 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQAL 482 (557)
Q Consensus 403 vLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al 482 (557)
||+++++|+++|++||++|+|++.++|+.+.+.|.+.+.++.++++++|+++|++++||||||+|||||+.+|..|.++|
T Consensus 238 vL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~agi~~~dId~v~~hgtgt~~~d~~E~~al 317 (411)
T PRK07314 238 VLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAI 317 (411)
T ss_pred EEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEEccccCCccccHHHHHHH
Confidence 99999999999999999999999999999888888888889999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 483 IHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 483 ~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
.++|+.. .++++++.|+++||+++|+|++++++++++|++++|||++|+++|+++++++
T Consensus 318 ~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~~ 377 (411)
T PRK07314 318 KRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDLD 377 (411)
T ss_pred HHHhcccCCCCeeECccchhchhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCcc
Confidence 9999854 4689999999999999999999999999999999999999999999988765
|
|
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=549.21 Aligned_cols=370 Identities=35% Similarity=0.518 Sum_probs=336.5
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCC-CCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~-~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
++|||||||+++|.|.+.++||++|.+|+++|++++.|+. ..++...++.+++|+.+.++++++.++||++++|++.++
T Consensus 2 ~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~aa 81 (405)
T PRK09116 2 RRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRAS 81 (405)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999998875 567888999999999888888999999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHH-hhhccCCCccccccccchhHHHHHHhhCCCCCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~-~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~t 322 (557)
++||+|||+.... ..++.|+||++|+..++.....++...+. .....++++.++..++|.++++|++.||++||+++
T Consensus 82 ~~Al~dAGl~~~~--~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~Gp~~t 159 (405)
T PRK09116 82 ELALEDAGLLGDP--ILTDGRMGIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLKGRVIP 159 (405)
T ss_pred HHHHHHcCCCCcc--ccCCCcEEEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCCCCccc
Confidence 9999999995321 34568999999999988877777666553 34455777777788889999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+++|+|++.||..|+++|++|++|++||||+|. +++.....|..++.++..+..|...|||||.+++|+++|||++++
T Consensus 160 i~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gEGa~~~ 238 (405)
T PRK09116 160 TSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGEGAGTL 238 (405)
T ss_pred ccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeeccEEEE
Confidence 9999999999999999999999999999999998 677777788888887766667888999999999999999999999
Q ss_pred EEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHH
Q 008700 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQAL 482 (557)
Q Consensus 403 vLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al 482 (557)
|||++++|+++|++||++|+|++.++|+.+.+.| +..++.++|+++|+++|++++|||||++|||||+.+|..|.++|
T Consensus 239 vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p--~~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai 316 (405)
T PRK09116 239 VLEELEHAKARGATIYAEIVGFGTNSDGAHVTQP--QAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQAT 316 (405)
T ss_pred EEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCC--CHHHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHH
Confidence 9999999999999999999999999999887654 56788999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC-CCC
Q 008700 483 IHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVV-AID 541 (557)
Q Consensus 483 ~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~-~~~ 541 (557)
+++|+. .++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|+| +++
T Consensus 317 ~~~fg~--~~pv~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ippt~~~~~~~~~~~~l~ 374 (405)
T PRK09116 317 AAVFGA--RMPISSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVDPACGALD 374 (405)
T ss_pred HHHhCC--CCeeECcchhhcccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCcccC
Confidence 999986 478999999999999999999999999999999999999999999988 554
|
|
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-66 Score=547.30 Aligned_cols=371 Identities=44% Similarity=0.715 Sum_probs=345.0
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|||||||+++|.|.+++++|++|++|+++|+++++|+...++....+++++||+..++++++.++||++++|++.+++
T Consensus 2 ~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa~ 81 (406)
T PRK08439 2 KRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAAR 81 (406)
T ss_pred CCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999988888888999999999888999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv 323 (557)
+||+|||++++ +++..++||++|+..++....+.++..+ ......++|+.++..+.|.++++++..||++||++++
T Consensus 82 ~AL~dAGl~~~---~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~~~ 158 (406)
T PRK08439 82 EAMKDAGFLPE---ELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLKGPNLSS 158 (406)
T ss_pred HHHHHcCCCcc---cCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCCCCcccc
Confidence 99999999875 4567899999999988877666554443 3455678888899999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||..|+++|++|++|++||||+|..+++..+..|..++.|+..+.+|+..|+|||.+++|+++|||++++|
T Consensus 159 ~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa~~lv 238 (406)
T PRK08439 159 VTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGAGALV 238 (406)
T ss_pred ccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCceEEEE
Confidence 99999999999999999999999999999999999999999999999999877888999999999999999999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~ 483 (557)
||++++|+++|++||++|.|++.++|+++++.|.+ .++.++|+++|+++|+ +||||||+|||||+.+|..|.++|+
T Consensus 239 Le~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~p~~--~~~~~a~~~al~~ag~--~~i~~v~~hgtgt~~~D~~E~~al~ 314 (406)
T PRK08439 239 LEEYESAKKRGAKIYAEIIGFGESGDANHITSPAP--EGPLRAMKAALEMAGN--PKIDYINAHGTSTPYNDKNETAALK 314 (406)
T ss_pred EccHHHHHHCCCeEEEEEEeEEccCCCCCCCCCCH--HHHHHHHHHHHHHcCC--CccCEEEccCCcCCCCCHHHHHHHH
Confidence 99999999999999999999999999988887766 6888999999999999 7999999999999999999999999
Q ss_pred HHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 484 HCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 484 ~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
++|+.. ..+++++.|+++||+++|+|++++++++++|+++++||++|+++|+|+++++.
T Consensus 315 ~~f~~~~~~~~v~s~K~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~ 374 (406)
T PRK08439 315 ELFGSKEKVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPECDLDY 374 (406)
T ss_pred HHhcccCCCCeEECcccccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCCccc
Confidence 999865 34679999999999999999999999999999999999999999999988764
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=541.93 Aligned_cols=363 Identities=39% Similarity=0.621 Sum_probs=329.0
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|||||||+++|.|.++++||++|++|+++|+++++|+...++..+.+++ +|+.+.+++++..++|++..++++.++.
T Consensus 2 ~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~r~~~~a~~aa~ 80 (406)
T PRK07967 2 RRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNV-KLDPTGLIDRKVMRFMGDASAYAYLAME 80 (406)
T ss_pred CcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCcccccCCCCceEEEc-CCChhhcCCHHHhhcCCHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999888988888887 4887777888888999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHH--hhhccCCCccccccccchhHHHHHHhhCCCCCeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~--~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~t 322 (557)
+||+|||+.++ .+...|+||++|+..+........+..+. .....++|+.++..+.|+++++|++.||++||+++
T Consensus 81 ~Al~dAGl~~~---~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~Gp~~t 157 (406)
T PRK07967 81 QAIADAGLSEE---QVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIKGVNYS 157 (406)
T ss_pred HHHHHcCCCCc---cCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCCCCccc
Confidence 99999999764 45678999999998877655554444443 34566788889999999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCCCCCceecCceEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
|+++|+|++.||..|+++|++|++|++||||+|. +.+.....|..++.|+.. +.+|+..|||||.+++||++|||+++
T Consensus 158 vs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGaa~ 236 (406)
T PRK07967 158 ISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGGGV 236 (406)
T ss_pred cccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceEEE
Confidence 9999999999999999999999999999999997 455566779999998754 46688999999999999999999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHH
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~A 481 (557)
+|||++++|++||++||++|+|++.++|+++++. |++.++.++|+++|+.++ + ||||||+|||||+.+|..|.++
T Consensus 237 lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~~~~--p~~~~~~~a~~~Al~~~~--~-~Idyi~aHgtGT~~~D~~E~~A 311 (406)
T PRK07967 237 VVVEELEHALARGAKIYAEIVGYGATSDGYDMVA--PSGEGAVRCMQMALATVD--T-PIDYINTHGTSTPVGDVKELGA 311 (406)
T ss_pred EEEeeHHHHHhCCCcEEEEEEEEEECCCCCCCCC--CCHHHHHHHHHHHHhCCC--C-CccEEEcCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999999998765 478899999999998654 5 9999999999999999999999
Q ss_pred HHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 008700 482 LIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVV 538 (557)
Q Consensus 482 l~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~ 538 (557)
|+++|+.. .++|+++|+++||+++|+|++++++++++|++++|||++|+++++|++
T Consensus 312 i~~~fg~~-~~~v~s~K~~~GH~~~AaG~~e~i~~~lal~~~~iPpt~~~~~~~~~~ 367 (406)
T PRK07967 312 IREVFGDK-SPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELDPQA 367 (406)
T ss_pred HHHHhCCC-CCeeECcccccccCccccchHHHHHHHHHHhcCcCCCCCCCCCCCccc
Confidence 99999864 468999999999999999999999999999999999999999999977
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-65 Score=543.16 Aligned_cols=374 Identities=50% Similarity=0.852 Sum_probs=348.6
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|+|||||+++|.|.++++||++|.+|+++++++++|+...++..+.+++++||++.|+++++.++||++++|++++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAAK 80 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCcccccCCCCcEEEEeCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999988888888999999999989999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv 323 (557)
+||+|||++++ +++..++|||+|+..+++...++++..+ ......++|+.++..+.|..++++++.||++||+++|
T Consensus 81 ~Al~dAgl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~g~~~~v 157 (407)
T TIGR03150 81 EAVEDSGLDIE---EEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYGAKGPNHAV 157 (407)
T ss_pred HHHHhcCCCcc---cCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhCCCCccccc
Confidence 99999999876 4567899999999988887777666555 3444567788888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||+.|+++|++|++|++||||+|.+++|..+..|...+.++..+.+|...++|||.+++|+++|||++++|
T Consensus 158 ~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~g~~~gEGAaalv 237 (407)
T TIGR03150 158 VTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRDGFVMGEGAGVLV 237 (407)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCCcEEEeceEEEEE
Confidence 99999999999999999999999999999999999999888999999988767777888999999999999999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~ 483 (557)
|+++++|+++|++||++|+|++.++|+.+.+.|.+.+.++.++++++|+++|++++||||||+|+|||+.+|..|.+++.
T Consensus 238 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~ 317 (407)
T TIGR03150 238 LEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIK 317 (407)
T ss_pred EeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999988888888888899999999999999999999999999999999999999999
Q ss_pred HHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 484 HCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 484 ~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
++|+.. .+++|++.|+++||+++|||++++++++++|+++++||++|+++|++.++++
T Consensus 318 ~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~ 376 (407)
T TIGR03150 318 RVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVLAIRDGVVPPTINLDNPDPECDLD 376 (407)
T ss_pred HHhccCCCCCceeCCcchhchhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Confidence 999864 3689999999999999999999999999999999999999999999988764
|
FabB sequences should fall well below the noise cutoff of this model. |
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=544.52 Aligned_cols=377 Identities=43% Similarity=0.718 Sum_probs=335.2
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCC--------------CCCCcccccccc------CCCCCC
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--------------TSFPTKIAAEIK------SFSTDG 222 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~--------------~~~~~~~~g~i~------~fd~~~ 222 (557)
..++|||||||+++|.|.++++||++|.+|+++|++++.+++ ..++.+..+.++ +||..+
T Consensus 4 ~~~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~ 83 (437)
T PLN02836 4 PTRRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEEL 83 (437)
T ss_pred CCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChHH
Confidence 356899999999999999999999999999999999987653 234556666664 566665
Q ss_pred CCChhhhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCcccccc
Q 008700 223 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFA 301 (557)
Q Consensus 223 ~i~p~~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~ 301 (557)
|.. .++|++..+|+++++++||+|||+++.. ..+..++||++|++.+.+....+++..+ ......++|+.++..
T Consensus 84 ~~~---~~~~~~~~~~~~~aa~~Al~dAg~~~~~--~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 158 (437)
T PLN02836 84 WLN---SRSSSRFIGYALCAADEALSDARWLPSE--DEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRI 158 (437)
T ss_pred hcc---ccccCHHHHHHHHHHHHHHHHcCCCccc--ccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhh
Confidence 532 4579999999999999999999997531 2356899999999988876666555444 334456788888999
Q ss_pred ccchhHHHHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCC
Q 008700 302 TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPT 380 (557)
Q Consensus 302 ~~n~~a~~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~ 380 (557)
+.|+++++|++.||++||+++|+++|+|++.||+.|+++|++|+||++||||+|..+++..+..|...+.++.. +.+|+
T Consensus 159 ~~n~~a~~is~~~gl~Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~ 238 (437)
T PLN02836 159 LINMAAGHVSIRYGFQGPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPT 238 (437)
T ss_pred cccHHHHHHHHHhCCCCceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999998899989999999888754 44577
Q ss_pred CCCCCCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 008700 381 KASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 381 ~~~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~d 460 (557)
..|+|||.+++|+++|||++++|||++++|+++|++||++|+|++.++|+.+.+.|.+++.+..++|++||+++||+++|
T Consensus 239 ~~~~pfd~~~~G~~~gEGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~Agi~~~d 318 (437)
T PLN02836 239 EASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQQSGLHPNQ 318 (437)
T ss_pred cccCCcccCCCCeeeecCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHHHcCCCHhH
Confidence 89999999999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHHHHHHhcCC---CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 008700 461 VNYINAHATSTPAGDIKEYQALIHCFGQN---RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAV 537 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~Al~~~~~~~---~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~ 537 (557)
|||||+|||||+.+|..|.+++.++|+.. ..+++++.|+++||+++|+|++++++++++|+++++||++|+++|+|.
T Consensus 319 Id~ve~hgtgt~~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~n~~~~~p~ 398 (437)
T PLN02836 319 VDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPI 398 (437)
T ss_pred cCEEEccCCcCcCcCHHHHHHHHHHhcccccCCCCeeECCcccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCC
Confidence 99999999999999999999999999864 258899999999999999999999999999999999999999999999
Q ss_pred CCCCCCc
Q 008700 538 VAIDSGH 544 (557)
Q Consensus 538 ~~~~~~~ 544 (557)
|+++.-+
T Consensus 399 ~~~~~~~ 405 (437)
T PLN02836 399 FDDGFVP 405 (437)
T ss_pred CCcccCc
Confidence 9876543
|
|
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-62 Score=521.11 Aligned_cols=374 Identities=51% Similarity=0.855 Sum_probs=348.4
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|+|||||+++|.|.+.+++|++|++|++++++++.|+...++..+.+++++|+..+.+++++.++||++++|++++++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAAE 80 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCcccccCCCccEEEEcCCCChhhcCCHHHhccCCHHHHHHHHHHH
Confidence 37999999999999999999999999999999999998888888889999999998877999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv 323 (557)
+||+|||++++ +++..++||++|++.++....++++..+ ......++|+.++....+..+++++..||++||+++|
T Consensus 81 ~AL~dAgl~~~---~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g~~~~v 157 (406)
T cd00834 81 EALADAGLDPE---ELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTV 157 (406)
T ss_pred HHHHHcCCCcc---cCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHhCCCCccccc
Confidence 99999999976 4567999999999999888777777665 3445567888888888899999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||+.|+++|++|++|.+||||+|...+|..+..|...+.++....+|+..++|||.+++|+++||||+++|
T Consensus 158 ~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~~g~~~geGA~a~v 237 (406)
T cd00834 158 STACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDRDGFVLGEGAGVLV 237 (406)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCCCCEeeeccEEEEE
Confidence 99999999999999999999999999999999988899999999999998776668889999999999999999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~ 483 (557)
|++.++|+++|+++|++|+|++.++|+.+.+.+.+.+.++.++++++|+++|++++||||||+|+|||+.+|.+|.++|.
T Consensus 238 L~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~agi~~~dId~v~~h~tgt~~~d~~E~~al~ 317 (406)
T cd00834 238 LESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIK 317 (406)
T ss_pred EecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEecccccCccccHHHHHHHH
Confidence 99999999999999999999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 484 HCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 484 ~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
++|+.. .++++++.|+++||+++|||++++++++++|+++++||++|+++|++.++++
T Consensus 318 ~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 376 (406)
T cd00834 318 RVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDLD 376 (406)
T ss_pred HHhcccCCCCceeCcchhhccchhhhhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Confidence 999864 4689999999999999999999999999999999999999999999866654
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-62 Score=520.87 Aligned_cols=364 Identities=37% Similarity=0.556 Sum_probs=332.8
Q ss_pred CcEEEEecceeccCCCC---HHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccC---CHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHE---PDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRM---DKFMLY 238 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~---~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~m---d~~~rl 238 (557)
.+|||||||+++|.|.+ +++||++|.+|++++++++.++ ..++..+.+++++|+ +++++.+++ |++++|
T Consensus 1 ~~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~-~~~~~~~~g~i~~~~----~~~~~~~~~~~~~~~~~l 75 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGD----IPGWDAKRTGIVDRTTLL 75 (407)
T ss_pred CCEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc-ccCCccEEEEccCCC----cCHHHHHhccCCCHHHHH
Confidence 36999999999999999 9999999999999999999887 567778888888776 678888888 999999
Q ss_pred HHHHHHHHHHHCCCChhhhhc-ccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCcccccccc--chhHHHHHHhhC
Q 008700 239 LLTAGKKALADGGITEDVMNE-LDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT--NMGSAMLAMDLG 315 (557)
Q Consensus 239 ~l~aa~eALedAGl~~~~i~~-~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~--n~~a~~ia~~lg 315 (557)
+++++++||+|||++++ + ++..++||++|+..++....+.++..+. +..+++.++..+. |.+++++++.||
T Consensus 76 ~~~aa~~Al~dAGl~~~---~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~is~~~g 149 (407)
T cd00828 76 ALVATEEALADAGITDP---YEVHPSEVGVVVGSGMGGLRFLRRGGKLDA---RAVNPYVSPKWMLSPNTVAGWVNILLL 149 (407)
T ss_pred HHHHHHHHHHhCCCCcc---ccCCccCeEEEEeeccCCHHHHHHHHHHHh---hccCCcccchhccccchHHHHHHHHhC
Confidence 99999999999999875 4 5678999999999888776665554432 4567777888887 999999999999
Q ss_pred C-CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 316 W-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 316 l-~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
+ +||+++|+++|+|++.||..|+++|++|++|++||||+|.+. +..+..|..++.++.....|...|+|||.+++|++
T Consensus 150 l~~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~G~~ 228 (407)
T cd00828 150 SSHGPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTAEEEPEEMSRPFDETRDGFV 228 (407)
T ss_pred cCCCCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCCCCCCCcccCCCcCCCCcEE
Confidence 9 999999999999999999999999999999999999999987 88889999999998766667789999999999999
Q ss_pred ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccC
Q 008700 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAG 474 (557)
Q Consensus 395 ~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~ 474 (557)
+||||+++|||++++|+++|++||++|.|++.++|+.+...+. ++.++.++|+++|+++|++++||||||+|+|||+.+
T Consensus 229 ~gEGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~-~~~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~~ 307 (407)
T cd00828 229 EAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALAKAGLSLDDLDVISAHGTSTPAN 307 (407)
T ss_pred eecceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCC-ChHHHHHHHHHHHHHcCCCHHHcCEEecccccCccc
Confidence 9999999999999999999999999999999999999887766 788999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 475 DIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 475 D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
|..|.++++++|+.. .++++++.|+++||+++|+|++++++++++|+++++||++|+++|+|+++++
T Consensus 308 D~~E~~ai~~~~~~~~~~~~v~s~K~~~Gh~~~Asg~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~~~ 375 (407)
T cd00828 308 DVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANLDDVDPDVEHL 375 (407)
T ss_pred cHHHHHHHHHHHhccCCCceeecccchhccchhhhhHHHHHHHHHHHhcCccCCCCCCCCCCcccccc
Confidence 999999999999865 3689999999999999999999999999999999999999999999998544
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-62 Score=519.01 Aligned_cols=371 Identities=28% Similarity=0.403 Sum_probs=325.6
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCC--------CCCccccccccCCCCCCCCChhhhccCCHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT--------SFPTKIAAEIKSFSTDGWVAPKLSKRMDKF 235 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~--------~~~~~~~g~i~~fd~~~~i~p~~~~~md~~ 235 (557)
|++|||||||+++|.|.++++||++|++|+++|++++.|+.. ..+..+++++++|+.+.+++++..++|++.
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELDSLALPERLDAKLLRRASLS 80 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCcccccccccccccCCCceEEEEeCCCChhhcCCHHHhhcCCHH
Confidence 368999999999999999999999999999999999887653 234557788888888777888888999999
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
++|++.++++||+|||++ ..+..|+||++|++.+......+++..+......+.|+.....+.+.++++|++.||
T Consensus 81 ~~lal~Aa~eAl~dAgl~-----~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 155 (410)
T PRK07103 81 AQAALAAAREAWRDAALG-----PVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFG 155 (410)
T ss_pred HHHHHHHHHHHHHhcCcC-----CCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhC
Confidence 999999999999999995 345689999999887666555555544433444556666666677889999999999
Q ss_pred CCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc--CCCCCCCCCCCcCCCCCc
Q 008700 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR--NNDPTKASRPWDINRDGF 393 (557)
Q Consensus 316 l~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~--~~~p~~~~rpfd~~~dG~ 393 (557)
++||+++|+++|+|++.||+.|+++|++|++|+|||+|+|..+++..+.+|..++.|+.. ..+|...|+|||.+++|+
T Consensus 156 l~G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~dG~ 235 (410)
T PRK07103 156 IRGEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDGF 235 (410)
T ss_pred CCCCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCCCe
Confidence 999999999999999999999999999999999999999988899999999998888743 456888999999999999
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCcc
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPA 473 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~ 473 (557)
++|||++++|||++++|+++|++||++|+|++.++|+++.. .|+..++.++|+++|+++|++++||||||+|||||+.
T Consensus 236 v~gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~--~p~~~~~~~a~~~Al~~Agi~~~dId~v~~hgtgt~~ 313 (410)
T PRK07103 236 IYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGP--DPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPL 313 (410)
T ss_pred eEeeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCCCC--CCCHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCCC
Confidence 99999999999999999999999999999999999998754 5567778899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCC-CCCCCCCCC
Q 008700 474 GDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP-DAVVAIDSG 543 (557)
Q Consensus 474 ~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p-~~~~~~~~~ 543 (557)
+|..|.++|...+ ..+++|++.|+++||+++|+|++++++++++|+++++||++|+++| +++++|...
T Consensus 314 ~D~~E~~al~~~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~~~v~~ 382 (410)
T PRK07103 314 GDETELAALFASG--LAHAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDERFRWVGS 382 (410)
T ss_pred CCHHHHHHHhcCC--CCCCeEECCCcccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCcCccCC
Confidence 9999999993321 2358999999999999999999999999999999999999999998 676665443
|
|
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=515.95 Aligned_cols=365 Identities=44% Similarity=0.745 Sum_probs=328.6
Q ss_pred eeccCCCCHHHHHHHHHcCCCcceeccCCC----------------CCCCCcccccccc--CCCCCCCCChhhhccCCHH
Q 008700 174 LVSPLGHEPDVFYNNLLEGVSGISEIETFD----------------CTSFPTKIAAEIK--SFSTDGWVAPKLSKRMDKF 235 (557)
Q Consensus 174 ~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~----------------~~~~~~~~~g~i~--~fd~~~~i~p~~~~~md~~ 235 (557)
+++|.|.++++||++|++|+++|++++.|+ ...++..++++|+ +||+.+|.. ..+++++
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~f~~~~~~~---~~~~~~~ 77 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSEFDPSDFAP---TKRESRA 77 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCcccCChhHcCC---cccCCHH
Confidence 478999999999999999999999998876 4557778888887 577766532 2256999
Q ss_pred HHHHHHHHHHHHHHCCCC-hhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHh
Q 008700 236 MLYLLTAGKKALADGGIT-EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~-~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
++|++.++++||+|||++ ++ .++..++|+++|++.+++....+++..+ ..+...++|+.++..+.|.++++|++.
T Consensus 78 ~~l~~~aa~~Al~dAGl~~~~---~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~ 154 (421)
T PTZ00050 78 THFAMAAAREALADAKLDILS---EKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK 154 (421)
T ss_pred HHHHHHHHHHHHHHcCCCccc---ccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999998 54 4556899999999988877666655554 345566788889999999999999999
Q ss_pred hCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCCCCC
Q 008700 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDG 392 (557)
Q Consensus 314 lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~~dG 392 (557)
||++||+++|+++|+||+.||..|+++|++|++|++||||+|.+++|..+..|..++.++.. +.+|+..|+|||.+++|
T Consensus 155 ~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~~G 234 (421)
T PTZ00050 155 HKLKGPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAG 234 (421)
T ss_pred hCCCCcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999998899888999999888754 45678899999999999
Q ss_pred ceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCccEEEEcCCCC
Q 008700 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAH-SGVSREDVNYINAHATST 471 (557)
Q Consensus 393 ~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~-Agl~~~dId~ve~hgtgt 471 (557)
+++||||+++|||++++|+++|++||++|+|++.++|+++.+.|.+++.++.++|+++|++ +|++++||||||+|||||
T Consensus 235 ~~~gEGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~~~Agi~~~dId~ie~hgtgt 314 (421)
T PTZ00050 235 FVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANININDVDYVNAHATST 314 (421)
T ss_pred EeeccceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHhccCCChhhCCEEECCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCcHHHHHHHHHHhcCC--CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 008700 472 PAGDIKEYQALIHCFGQN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGH 544 (557)
Q Consensus 472 ~~~D~~E~~Al~~~~~~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~ 544 (557)
+++|.+|++++.++|+.. .+++|++.|+++||+++|||++++++++++|++++|||++|+++|+++++++--+
T Consensus 315 ~~~D~~E~~al~~~~~~~~~~~~~v~s~K~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~l~~~~ 389 (421)
T PTZ00050 315 PIGDKIELKAIKKVFGDSGAPKLYVSSTKGGLGHLLGAAGAVESIVTILSLYEQIIPPTINLENPDAECDLNLVQ 389 (421)
T ss_pred CCCCHHHHHHHHHHhccccCCCceEECccccccccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCccccC
Confidence 999999999999999864 4689999999999999999999999999999999999999999999988765433
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=499.19 Aligned_cols=348 Identities=34% Similarity=0.526 Sum_probs=305.6
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCC-CCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~-~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~a 242 (557)
|++|||||||+++|.|. .++||++|++|+++|++++.|+. ..++.. .+. + .+ ..++ ++...+
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~~~~~~~~---~~~-~------~~---~~~~---~~~~~a 63 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPELPPLPLG---LIG-N------QP---SSLE---DLTKTV 63 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccccccccce---eec-c------cc---cccc---HHHHHH
Confidence 46899999999999999 99999999999999999887752 112111 110 0 01 1233 355688
Q ss_pred HHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhh-h---ccCCCccccccccchhHHHHHHhhCCCC
Q 008700 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-Y---KKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (557)
Q Consensus 243 a~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~-~---~~~~p~~~~~~~~n~~a~~ia~~lgl~G 318 (557)
+++||+|+|++++ ..|+||++|++.++...+++++..+... . ..++|..++..+.|.+++++++.||++|
T Consensus 64 ~~~Al~dagl~~~------~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~G 137 (381)
T PRK05952 64 VTAALKDAGLTPP------LTDCGVVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQG 137 (381)
T ss_pred HHHHHHhcCCCCC------CCCEEEEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCCC
Confidence 9999999999742 3789999999998887777766554321 1 2456777788899999999999999999
Q ss_pred CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 319 p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
|+++++++|+|++.||..|+++|++|++|++||||+|..+++..+..|..++.++. ..|||||.+++||++|||
T Consensus 138 p~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls~------~~~rPfd~~r~G~v~gEG 211 (381)
T PRK05952 138 PVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAK------TGAYPFDRQREGLVLGEG 211 (381)
T ss_pred ccccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcCC------CCCCCCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999899999999999998873 359999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHH
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKE 478 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E 478 (557)
++++|||++++|+++|++||++|+|++.++|+.+...|.+++..+.++|+++|+++|++|+||||||+|||||+.+|..|
T Consensus 212 aa~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E 291 (381)
T PRK05952 212 GAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQRE 291 (381)
T ss_pred EEEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 479 YQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 479 ~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
.++|+++|+. .++|++.|+++||+++|+|++++++++++|+++++||++|+++|++++++..
T Consensus 292 ~~al~~~fg~--~~~v~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~v~ 353 (381)
T PRK05952 292 ANLIQALFPH--RVAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPEFDLNFVR 353 (381)
T ss_pred HHHHHHHcCC--CCeeecchhhhccChHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcCC
Confidence 9999999985 4899999999999999999999999999999999999999999877666553
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=495.00 Aligned_cols=345 Identities=22% Similarity=0.276 Sum_probs=291.8
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChh-hhccCCHHHHHHHH
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPK-LSKRMDKFMLYLLT 241 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~-~~~~md~~~rl~l~ 241 (557)
..++|||||||+++|.|.++++||++|.+|+++ ..++..+...++.... .+++.+.+++++ +.++||+.++|++.
T Consensus 4 ~~~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~~r~~~~a~~ 79 (398)
T PRK06519 4 QPNDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETFAPYPVHPL---PEIDWSQQIPKRGDQRQMETWQRLGTY 79 (398)
T ss_pred CCCCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccccCcCcccc---cccChhhcCCchhhhhccCHHHHHHHH
Confidence 356899999999999999999999999999997 2222222222333222 334444456666 67899999999999
Q ss_pred HHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHH------------HHHH-HhhhccCCCccccccccchhHH
Q 008700 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA------------IEAL-RISYKKMNPFCVPFATTNMGSA 308 (557)
Q Consensus 242 aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~------------~~~l-~~~~~~~~p~~~~~~~~n~~a~ 308 (557)
++.+||+|||++.. ..+..|+||++|++.++.....+. ...+ ....+.++|+.++..+.|.+++
T Consensus 80 Aa~~Al~dAGl~~~---~~~~~r~GvivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~ 156 (398)
T PRK06519 80 AAGLALDDAGIKGN---EELLSTMDMIVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAG 156 (398)
T ss_pred HHHHHHHHcCCCCC---CCCccceEEEEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHH
Confidence 99999999999753 334579999999999887654332 1112 2344567899999999999999
Q ss_pred HHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCC-Cc
Q 008700 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRP-WD 387 (557)
Q Consensus 309 ~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rp-fd 387 (557)
+|++.||++||+++|+++|+|++.||..|+++|++|++|++||||+|..+++..+..|..++.++.. .++| ||
T Consensus 157 ~is~~~gl~Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~ls~~------~~~p~~d 230 (398)
T PRK06519 157 NISIVHKVTGSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLKG------GWAPVWS 230 (398)
T ss_pred HHHHHhCCCCccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCccCCC------CCCchhc
Confidence 9999999999999999999999999999999999999999999999998999889999999888732 3555 55
Q ss_pred C---CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 008700 388 I---NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYI 464 (557)
Q Consensus 388 ~---~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~v 464 (557)
. +++||++|||++++|||++++|++||++|||+|.|++. |.. +. ...++.++|++||++||+ ++|||||
T Consensus 231 ~~~~~r~G~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~--d~~----~~-~~~~~~~am~~AL~~Agl-~~~IdyI 302 (398)
T PRK06519 231 RGGEDGGGFILGSGGAFLVLESREHAEARGARPYARISGVES--DRA----RR-APGDLEASLERLLKPAGG-LAAPTAV 302 (398)
T ss_pred cCccCCCCeeeeceEEEEEEeeHHHHHhCCCceEEEEEEEee--cCC----CC-ChHHHHHHHHHHHHHCCC-cccCCEE
Confidence 5 69999999999999999999999999999999999964 322 11 345788999999999999 8999999
Q ss_pred EEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 008700 465 NAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLE 532 (557)
Q Consensus 465 e~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~ 532 (557)
++|||||+.+|..|.++|+++|+ .+|+++|+++||+++|+|+++++.++++|+++++||++|+.
T Consensus 303 ~ahgtgT~~~D~~E~~Ai~~~f~----~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~g~vpp~~n~~ 366 (398)
T PRK06519 303 ISGATGAHPATAEEKAALEAALA----GPVRGIGTLFGHTMEAQFPLGLALAALSVSKGALFPPFDAS 366 (398)
T ss_pred EeCCCCCCCccHHHHHHHHHHcC----CCccccchhhccchHHHHHHHHHHHHHHHhcCccCCCCCCC
Confidence 99999999999999999999996 57999999999999999999999999999999999999983
|
|
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=495.32 Aligned_cols=370 Identities=31% Similarity=0.512 Sum_probs=328.4
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceecc--CCCCCC----------CCccccccccC---CCCCCC-CChhh
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTS----------FPTKIAAEIKS---FSTDGW-VAPKL 228 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~--~~~~~~----------~~~~~~g~i~~---fd~~~~-i~p~~ 228 (557)
++|||||||+++|.|.++++||++|.+|++++++++ +|+... .+....+++++ ||...| +++++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 80 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPRE 80 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccccccccCCCcceecceecCCcccCCHhHcCCCHHH
Confidence 369999999999999999999999999999999986 354332 24455666665 565555 89999
Q ss_pred hccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHH
Q 008700 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (557)
Q Consensus 229 ~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~ 308 (557)
.+.||++++|+++++++||+|||++++ +++..++||++|+..+.+ ...+......++++.++..+.+..+.
T Consensus 81 ~~~~~~~~~l~~~aa~~AL~dAgl~~~---~~~~~~~gv~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~a~ 151 (421)
T cd00833 81 AEAMDPQQRLLLEVAWEALEDAGYSPE---SLAGSRTGVFVGASSSDY------LELLARDPDEIDAYAATGTSRAFLAN 151 (421)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCch---hcCCCCceEEeCcCHHHH------HHHHhhcccccCcccccCcchHHHHH
Confidence 999999999999999999999999876 456789999999876522 22222233356788888888899999
Q ss_pred HHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 309 ~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
+++..+|++||+++++++|+|++.||..|+++|++|++|++||||+|.+.++..+..|...+.++ +...++|||.
T Consensus 152 ~i~~~~gl~g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~-----~~~~~~pf~~ 226 (421)
T cd00833 152 RISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS-----PDGRCRPFDA 226 (421)
T ss_pred HHHHHcCCCCCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCC-----CCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888888888888776 5567999999
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHA 468 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hg 468 (557)
+++|+++|||++++||+++++|+++|+++|++|+|++.++++.+.....|+..++.++++++|+++|++++||||||+||
T Consensus 227 ~~~g~~~geGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~~Agi~~~did~i~~hg 306 (421)
T cd00833 227 DADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHG 306 (421)
T ss_pred CCCCeeeeceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHCcEEEeeC
Confidence 99999999999999999999999999999999999999999887666677888999999999999999999999999999
Q ss_pred CCCccCcHHHHHHHHHHhcCC----CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 008700 469 TSTPAGDIKEYQALIHCFGQN----RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGH 544 (557)
Q Consensus 469 tgt~~~D~~E~~Al~~~~~~~----~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~ 544 (557)
|||+.+|..|.++|.++|+.. .++++++.|+++||+++|+|++++++++++|+++++||++|+++|++.++++..+
T Consensus 307 tgt~~~D~~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~aag~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~ 386 (421)
T cd00833 307 TGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESP 386 (421)
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCCCceeeecCcCccccchhhhHHHHHHHHHHHHhcCCcCCcCCCCCCCCCCCcccCC
Confidence 999999999999999999864 3678999999999999999999999999999999999999999999999998877
Q ss_pred cccC
Q 008700 545 ECAC 548 (557)
Q Consensus 545 ~~~~ 548 (557)
++++
T Consensus 387 ~~~~ 390 (421)
T cd00833 387 LRVP 390 (421)
T ss_pred eEee
Confidence 7766
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=496.24 Aligned_cols=369 Identities=30% Similarity=0.478 Sum_probs=329.4
Q ss_pred EEEEecceeccCCCCHHHHHHHHHcCCCcceecc--CCCCCCC------------Ccccccccc---CCCCCCC-CChhh
Q 008700 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE--TFDCTSF------------PTKIAAEIK---SFSTDGW-VAPKL 228 (557)
Q Consensus 167 IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~--~~~~~~~------------~~~~~g~i~---~fd~~~~-i~p~~ 228 (557)
|+|||||+++|.|.++++||++|.+|++++++++ +|+...+ ....+++++ +||.+.| +++++
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~~~~ 80 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDDVDLFDAAFFGISPRE 80 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCchhhCCHhHcCCCHHH
Confidence 6899999999999999999999999999999885 5654432 344555544 4777777 89999
Q ss_pred hccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHH
Q 008700 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA 308 (557)
Q Consensus 229 ~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~ 308 (557)
.++|+++++|+++++++||+|||+++. +++++|+|||+|+..++ +...+......++++.++..+.+..+.
T Consensus 81 ~~~~~~~~~l~~~aa~~Al~dAGl~~~---~id~~~~gv~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~ 151 (424)
T smart00825 81 AEAMDPQQRLLLEVAWEALEDAGIDPE---SLRGSRTGVFVGAMSSD------YAELLARDPEDIEGYAATGTARSFIAN 151 (424)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCChh---HcCCCCCEEEEEEcHHH------HHHHHhhCccccchhhhccchhHHHHH
Confidence 999999999999999999999999876 45578999999987532 333334445566777778888889999
Q ss_pred HHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 309 MLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 309 ~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
+++..+|++||+++|+++|+|++.||..|+++|++|++|+|||||+|...++..+..|...+.++ +++.++|||.
T Consensus 152 ~i~~~lgl~g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~-----~~~~~~pf~~ 226 (424)
T smart00825 152 RISYFFDLRGPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS-----PDGRCKTFDA 226 (424)
T ss_pred HHHHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC-----CCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888888888887776 6678999999
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHA 468 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hg 468 (557)
+++|+++|||++++||+++++|+++|++||++|+|++..+++.+.....|+...+..+|+++|+++|++++|||||++||
T Consensus 227 ~~~g~~~geGAaalVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~dId~i~~h~ 306 (424)
T smart00825 227 DADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALARAGVDPADVDYVEAHG 306 (424)
T ss_pred CCCcccccceEEEEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHhCCCHHHccEEEeeC
Confidence 99999999999999999999999999999999999999999887666677888899999999999999999999999999
Q ss_pred CCCccCcHHHHHHHHHHhcCC----CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 008700 469 TSTPAGDIKEYQALIHCFGQN----RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGH 544 (557)
Q Consensus 469 tgt~~~D~~E~~Al~~~~~~~----~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~ 544 (557)
|||+.+|..|.++|.++|+.. .+++|++.|+++||+.+|+|++++++++++|+++++||++|+++|++.++++..+
T Consensus 307 tgt~~~d~~E~~al~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~ 386 (424)
T smart00825 307 TGTPLGDPIEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTIPPTLHFETPNPHIDLEESP 386 (424)
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCCCceEEeccccccCCcccchhHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccCc
Confidence 999999999999999999853 3578999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 008700 545 ECACG 549 (557)
Q Consensus 545 ~~~~~ 549 (557)
++++-
T Consensus 387 ~~~~~ 391 (424)
T smart00825 387 LRVPT 391 (424)
T ss_pred eEccC
Confidence 88773
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-58 Score=489.67 Aligned_cols=369 Identities=36% Similarity=0.478 Sum_probs=320.6
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
+.+|+|||||+++|.|.+.++||++|++|+++|+++++|+...++.++.+.++.|+.. ....+++.++|.+.++
T Consensus 10 ~~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~aa 83 (425)
T PRK06501 10 RPIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLPES------PFGASALSEALARLAA 83 (425)
T ss_pred CcCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecccc------cccccCHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999888888888888633322 2234678899999999
Q ss_pred HHHHHHCCCChhhhh-----------cccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHH
Q 008700 244 KKALADGGITEDVMN-----------ELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLA 311 (557)
Q Consensus 244 ~eALedAGl~~~~i~-----------~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia 311 (557)
++||+|||++..+++ ...+.+++++.+........ ++.+ .....+..+..+.....+..+.+|+
T Consensus 84 ~~Al~dAgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~ 159 (425)
T PRK06501 84 EEALAQAGIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPS----YDRLLRAARGGRFDALHERFQFGSIADRLA 159 (425)
T ss_pred HHHHHHcCCCccccccceeeccccccCCCCceEEEEEecCCccHHH----HHHHHhhcCcccCChhhhhhcccHHHHHHH
Confidence 999999999643211 01246788888776543221 2222 2222222333455667778899999
Q ss_pred HhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCC
Q 008700 312 MDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (557)
Q Consensus 312 ~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~d 391 (557)
..||++||+++|+++|+|++.||+.|+++|++|++|++||||+|..+++..+..|..++.++...+.|+..|||||.+++
T Consensus 160 ~~~gl~G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~~~~rpfd~~r~ 239 (425)
T PRK06501 160 DRFGTRGLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQNDPPEKASKPFSKDRD 239 (425)
T ss_pred HHhCCCCCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhccccCCCCCCcccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999989999999999999998777778889999999999
Q ss_pred CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCC
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATST 471 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt 471 (557)
|+++|||++++|||++++|+++|++||++|.|++.++|+++.+.+.|++..+.++|+++|+++|++++|||||++|||||
T Consensus 240 G~v~GEGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~AL~~agi~p~dId~i~~Hgtgt 319 (425)
T PRK06501 240 GFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAALADAGLTPEQIDYINAHGTST 319 (425)
T ss_pred CeeeeccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCccC
Confidence 99999999999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 472 PAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 472 ~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
+.+|..|..+|.++|+.. ..++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|+++++.
T Consensus 320 ~~~d~~E~~al~~~~~~~~~~~pv~s~k~~~Gh~~~AsG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~~~ 391 (425)
T PRK06501 320 PENDKMEYLGLSAVFGERLASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLDV 391 (425)
T ss_pred cchHHHHHHHHHHHhcccCCCcEEECCCcccCCCchhhhHHHHHHHHHHHhcCcCCCcCCCCCCCCCCCccc
Confidence 999999999999999854 46899999999999999999999999999999999999999999999998764
|
|
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-58 Score=471.77 Aligned_cols=302 Identities=42% Similarity=0.658 Sum_probs=283.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHH
Q 008700 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAML 310 (557)
Q Consensus 232 md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~i 310 (557)
|++.++|++.++++||+|||+. .+..|+||++|++.++....+++++.+ ..+...++|+.++..+.|.++++|
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~------~~~~r~Gv~~G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~i 74 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNT------EKQERTATIIGAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHV 74 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC------CCcccEEEEEecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHH
Confidence 5789999999999999999975 245789999999999998888777665 455667899999999999999999
Q ss_pred HHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCC
Q 008700 311 AMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDIN 389 (557)
Q Consensus 311 a~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~ 389 (557)
++.||++||+++|+++|+|++.||..|+++|+.|++|++||||+|..+++..+..|..++.|+.. +.+|++.|||||.+
T Consensus 75 s~~~~l~Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~ 154 (342)
T PRK14691 75 SIKHHFKGPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTA 154 (342)
T ss_pred HHHhCCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999854 56688999999999
Q ss_pred CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCC
Q 008700 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHAT 469 (557)
Q Consensus 390 ~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgt 469 (557)
++||++||||+++|||++++|+++|++||++|+|++.++|+++...+.|++.++.++|+++|+++|++++||||||+|||
T Consensus 155 r~G~v~gEGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~~Agl~p~dIdyIeaHgt 234 (342)
T PRK14691 155 RDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHAT 234 (342)
T ss_pred CCCccccceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCC
Confidence 99999999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred CCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 008700 470 STPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539 (557)
Q Consensus 470 gt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~ 539 (557)
||+.+|.+|.++|+++|+....++|+++|+++||+++|+|++++++++++|+++++||++|+++|+|+|+
T Consensus 235 gT~~~D~~E~~Ai~~~fg~~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ippt~n~~~~d~~~~ 304 (342)
T PRK14691 235 STPVGDLGEINAIKHLFGESNALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAK 304 (342)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCceEECCcccccCCcchhhHHHHHHHHHHHhCCccCCcCCCCCCCcccc
Confidence 9999999999999999997556899999999999999999999999999999999999999999999873
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=459.07 Aligned_cols=353 Identities=30% Similarity=0.428 Sum_probs=300.7
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCC-CcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGV-SGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~-~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~a 242 (557)
|++|||||+|+++|.|.+++++|++|++|+ ++|++++.|+.. ++. ..+.+++|+. .+++.+..+.|++..+++..+
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~~~-~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 77 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWLVD-LPT-WVGEVVGVEL-PALPAALAAFDCRNNRLALLA 77 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccccc-CCe-EEEEecCccc-ccCCHHHHhcCCHHHHHHHHH
Confidence 468999999999999999999999999999 999999877653 433 3356776763 346666777888888887777
Q ss_pred HHH---HHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhc-cCCCccccccccchhHHHHHHhhCCCC
Q 008700 243 GKK---ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYK-KMNPFCVPFATTNMGSAMLAMDLGWMG 318 (557)
Q Consensus 243 a~e---ALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~-~~~p~~~~~~~~n~~a~~ia~~lgl~G 318 (557)
+.+ +++|++- ..+..|+||++|++.++....+.++..+..... ...++.++....+.++.++++.||++|
T Consensus 78 ~~~~~~a~~~~~~------~~~~~r~gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~G 151 (392)
T PRK09185 78 LQQIEPAVEAAIA------RYGADRIGVVLGTSTSGILEGELAYRRRDPAHGALPADYHYAQQELGSLADFLRAYLGLSG 151 (392)
T ss_pred HHHHHHHHHhhcc------cCCCCcEEEEEeeCCccHHHHHHHHHHHhhccCCCCCchhhhhhcccHHHHHHHHHhCCCC
Confidence 666 5555541 345679999999999888777766555322211 224566677788899999999999999
Q ss_pred CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 319 p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
|+++++++|+|++.||..|+++|++|++|.|||||+|. .++..+..|..++.++ .+.|+|||.+++|+++|||
T Consensus 152 p~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~------~~~~~Pfd~~~~G~~~gEG 224 (392)
T PRK09185 152 PAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLS------PQPCRPFSANRDGINIGEA 224 (392)
T ss_pred CcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccC------CCccCCCcCCCCccceece
Confidence 99999999999999999999999999999999999997 4566666777776665 3579999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHH
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKE 478 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E 478 (557)
++++|||++ ++.+ ++|.|++.++|+++...|.|++.++.++++++|+++|++++|||||++|||||+.+|..|
T Consensus 225 aa~vVLe~~-----~~~~--~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E 297 (392)
T PRK09185 225 AAFFLLERE-----DDAA--VALLGVGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAME 297 (392)
T ss_pred EEEEEEEEc-----CCCc--EEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHH
Confidence 999999987 2333 579999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 479 YQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 479 ~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
..+|.++|+.. ++|++.|+++||+++|||++++++++++|+++++||++|+++|+|+++++
T Consensus 298 ~~al~~~f~~~--~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 358 (392)
T PRK09185 298 SRAVAAVFGDG--VPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPL 358 (392)
T ss_pred HHHHHHHhCCC--CceeCCCcccccChhhcchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Confidence 99999999863 67999999999999999999999999999999999999999999998764
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-54 Score=463.65 Aligned_cols=371 Identities=25% Similarity=0.410 Sum_probs=326.9
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCC---Ccccc--ccccCCCCCCC-CChhhhccCCHHH
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF---PTKIA--AEIKSFSTDGW-VAPKLSKRMDKFM 236 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~---~~~~~--g~i~~fd~~~~-i~p~~~~~md~~~ 236 (557)
++++|||+||+..+|...++++||.+|.+|.+-+++-++-...++ |.+.+ ..+..||..+| +.++++..||||.
T Consensus 9 ~~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~rrW~~G~ygLP~r~gKlKdL~kFDa~ff~vh~KQa~~MDPq~ 88 (2376)
T KOG1202|consen 9 KQEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEAGLYGLPKRSGKLKDLNKFDAGFFGVHPKQANTMDPQL 88 (2376)
T ss_pred cCCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcccccccccCCchhhcchhhhhhhcccccCcCcccccccCHHH
Confidence 478899999999999999999999999999999988755333333 43333 23457999988 8999999999999
Q ss_pred HHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC
Q 008700 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (557)
Q Consensus 237 rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl 316 (557)
||+|++.|||+-||||+|+ +++++++|||+|.+..+... .+..+....+.+...+....|.+.||++.|+|
T Consensus 89 RlLLE~t~EAivDaGiNP~---~LRGs~tGv~vg~s~seTs~------~~~~dp~t~~Gy~mtgc~raMfaNRiSytFDf 159 (2376)
T KOG1202|consen 89 RLLLEATWEAIVDAGINPD---DLRGSRTGVFVGVSGSETSG------ALSQDPDTVNGYSMTGCVRAMFANRISYTFDF 159 (2376)
T ss_pred HHHHHHHHHHHHhCCCChh---hcCcccceeEEeecCccccc------cccCCCccccceeecccHHHHhhcceeEEEec
Confidence 9999999999999999997 78999999999987654431 12233444566677777888999999999999
Q ss_pred CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceec
Q 008700 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (557)
Q Consensus 317 ~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~g 396 (557)
+||++.+|++|+|++.|+..|++.|+.|+||.+||+|++..+.|..-..|-++++|+ |++.|+.||...|||..+
T Consensus 160 qGPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls-----~dGsCkaFDeagnGY~Rs 234 (2376)
T KOG1202|consen 160 QGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS-----PDGSCKAFDEAGNGYCRS 234 (2376)
T ss_pred cCCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC-----CCCcccchhccCCceeec
Confidence 999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred CceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCc
Q 008700 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH-MTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGD 475 (557)
Q Consensus 397 EGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~-~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D 475 (557)
||+++++|.+.+.|++ +||.|.....|.||+. ...+-|++.-+.+.|++.|+.+|++|+++-|||+|||||+.||
T Consensus 235 eg~~avllqrk~~ArR----vYAtilnartNTDGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~sv~YvEAHGtGTkVGD 310 (2376)
T KOG1202|consen 235 EGVVAVLLQRKSLARR----VYATILNARTNTDGFKEQGVTFPSGDMQEQLIRETYSEAGLNPESVVYVEAHGTGTKVGD 310 (2376)
T ss_pred CceEEEEEehhHHHHH----HHHHhhccccCCCchhhcCccCCCcHHHHHHHHHHHHhcCCCcccEEEEEeccCCCCCCC
Confidence 9999999999988864 8999999999999973 4456688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC--CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC-CCCCccccC-CCC
Q 008700 476 IKEYQALIHCFGQN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA-IDSGHECAC-GPK 551 (557)
Q Consensus 476 ~~E~~Al~~~~~~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~-~~~~~~~~~-~~~ 551 (557)
+-|.++|.+.|-.. .++.++|+|+|+||++-|||+..+.|.+++|++|.||||+||..|||++- +.++.+-+- .|+
T Consensus 311 pQEaN~it~~fC~~Rt~pLLIGSvKSNMGHaEPASGv~alaKillsmE~glip~NLHy~tPNp~ip~L~dGrLkVVd~~l 390 (2376)
T KOG1202|consen 311 PQEANGITRFFCATRTTPLLIGSVKSNMGHAEPASGVCALAKILLSMEEGLIPPNLHYNTPNPEIPALVDGRLKVVDRPL 390 (2376)
T ss_pred hHHhhhHHHHHhhcCCCceEeeeccccCCCCCccchHHHHHHHHHHHHhCcCCCccccCCCCCCcchhccceeEEecCCC
Confidence 99999999999743 47889999999999999999999999999999999999999999999985 556654333 444
|
|
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=337.49 Aligned_cols=317 Identities=18% Similarity=0.161 Sum_probs=247.9
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
+++|+|+|+|+++|.|.+.++.|++|+.|.+.....+.++....+.... ...+-++......+..+|+..++
T Consensus 2 ~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~r~~~La~~Al 73 (348)
T PRK06147 2 MRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIG--------APVPLPPPWRGPERLAEMAAPAI 73 (348)
T ss_pred CCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEe--------ecCcCCcccCchHHHHHHHHHHH
Confidence 3579999999999999999999999999988775544333210000000 00111222233457889999999
Q ss_pred HHHHHHCC-CChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC--CCCe
Q 008700 244 KKALADGG-ITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW--MGPN 320 (557)
Q Consensus 244 ~eALedAG-l~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl--~Gp~ 320 (557)
++||++++ +++ .++.++++..... .+..+. ...+..+..++..+|+ ++|+
T Consensus 74 ~~aL~~a~~~~~--------~~i~lil~~~~~~---------------~~~~~~----~~~~~~~~~~~~~lG~~~~~~~ 126 (348)
T PRK06147 74 AEALEGLPALDA--------SEAPLLLCVAEEE---------------RPGRPP----DLEERLLRELEARLGLRLEPGS 126 (348)
T ss_pred HHHHHhcccccc--------cCCcEEEEeCchh---------------cCCCCc----chHHHHHHHHHHHhCCCCCCCc
Confidence 99999998 443 3456777754210 000111 1112234567777787 5789
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceE
Q 008700 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
++|.++|+|+++||..|+++|++|++|.+||||+|.+..+..+..|...+.+.. +.+++||++||||+
T Consensus 127 ~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~------------~~~~~G~v~GEGA~ 194 (348)
T PRK06147 127 AVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLT------------SQNSNGFIPGEAAA 194 (348)
T ss_pred ccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCC------------CCCCCceeeeceEE
Confidence 999999999999999999999999999999999999888877777777655541 23689999999999
Q ss_pred EEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCC-CCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHH
Q 008700 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTE-PHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEY 479 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~-~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~ 479 (557)
++|||+.++|+++|++||+ .|++...++.+... +.+++.++.++|+++|+++|++++|||||++|+|||+.+|..|.
T Consensus 195 a~vLe~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~~agl~~~dId~v~ah~~gt~~~d~~e~ 272 (348)
T PRK06147 195 AVLLGRPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALAEAGCGLEDMDYRIADLNGEQYRFKEAA 272 (348)
T ss_pred EEEEccHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEcCCCCCccchHHHH
Confidence 9999999999999999998 67777666654432 22478899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCC
Q 008700 480 QALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNI 529 (557)
Q Consensus 480 ~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~ 529 (557)
.++.++|+.. ...++++.|+++||+++|+|+++++.++++|++|++|+..
T Consensus 273 ~A~~~~f~~~~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~g~~ 323 (348)
T PRK06147 273 LAEMRLFRVRKEFFDLWHPAECIGEIGAAIGPALLGVALAASRKGYGPGPN 323 (348)
T ss_pred HHHHHHhhhccCCCceecchHhhcchHHHHHHHHHHHHHHHHHcCcCCCCc
Confidence 9999999864 3567999999999999999999999999999999998663
|
|
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=320.87 Aligned_cols=235 Identities=41% Similarity=0.672 Sum_probs=185.8
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceecc-CCCCCCC---CccccccccC----------CCCCCC-CChhh
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE-TFDCTSF---PTKIAAEIKS----------FSTDGW-VAPKL 228 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~-~~~~~~~---~~~~~g~i~~----------fd~~~~-i~p~~ 228 (557)
|++|||||||+++|.|.+.++||++|.+|++++.+++ +|+...+ +....+.++. ||...+ +++++
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPERWDPSDYYDPPSRVAGEIDDKKGGFIDDFDFDAYFFGIPPRE 80 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCSSSCHTTSTTSSCSEEECBSSSEESSSTTTCGGGTSTCHHHHH
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeeccccccccccccCCcccccccccccceeeecccccccccccchh
Confidence 5789999999999999999999999999999999988 6766666 4455555554 444433 66777
Q ss_pred hccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCC-ceEEEEeccCCchhhHHHHHHHHH-hh--hccCCCccccccccc
Q 008700 229 SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKS-KCGVLIGSGLGGMKVFYDAIEALR-IS--YKKMNPFCVPFATTN 304 (557)
Q Consensus 229 ~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~-r~gV~vG~~~g~~~~~~~~~~~l~-~~--~~~~~p~~~~~~~~n 304 (557)
.++||++++|++.++++||+|||++++. ++.. |+||++|+..+++ +.+..+. .. .....|..++..+.|
T Consensus 81 ~~~~~~~~~~~l~aa~~Al~dAg~~~~~---~~~~~r~gv~~G~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (254)
T PF00109_consen 81 ARRMDRQSRLALAAAREALEDAGLDPDD---LDGERRVGVFVGSSSGDY----EFYRALDEDGETPRDVSPWFVPNTLPN 153 (254)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHTSTGGG---HTGGGTEEEEEEESSSHH----HHHHHHHHHTTCGGGSHTTHHHHHSTT
T ss_pred hhhhhhhhhHHHHHhhhhcccccccccc---cccccceeeccccccccc----cccccccccccccccccccccCccccc
Confidence 8899999999999999999999998763 3344 5999999998833 2333332 22 355566445556899
Q ss_pred hhHHHHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCC
Q 008700 305 MGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (557)
Q Consensus 305 ~~a~~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~r 384 (557)
.++++|++.||++||+++|+++|+||+.||+.|+++|++|++|+|||||+|..+++..+..|..++.++ +++.|+
T Consensus 154 ~~a~~ia~~~gl~G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s-----~~~~~~ 228 (254)
T PF00109_consen 154 SAAGRIAILFGLRGPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALS-----ADGPCR 228 (254)
T ss_dssp HHHHHHHHHHTB-SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB------TTSGGG
T ss_pred ccccchhhhcCCCCccccccccccccccccchhcccccccccccccccccccccccccccccccccccc-----cccccc
Confidence 999999999999999999999999999999999999999999999999999889999999999999887 336799
Q ss_pred CCcCCCCCceecCceEEEEEcchHHH
Q 008700 385 PWDINRDGFVMGEGAGVLLLEELEHA 410 (557)
Q Consensus 385 pfd~~~dG~v~gEGAaalvLe~~~~A 410 (557)
|||.+++|+++|||++++|||++++|
T Consensus 229 pf~~~~~G~v~gEGa~~~vLe~~~~A 254 (254)
T PF00109_consen 229 PFDPFADGFVLGEGAGALVLERLEHA 254 (254)
T ss_dssp STBTTB-SB-BB-EEEEEEEEEHHHH
T ss_pred ccCCCCCCEEEECceEEEEEEEhhhC
Confidence 99999999999999999999999886
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=314.50 Aligned_cols=290 Identities=34% Similarity=0.519 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
+++|+++++++||++||++++ ....+..+|++|+..+..... .........+.|+.+...+.+..+.+++..+
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~~---~~~~~i~~ii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 83 (332)
T cd00825 11 VSILGFEAAERAIADAGLSRE---YQKNPIVGVVVGTGGGSPRFQ----VFGADAMRAVGPYVVTKAMFPGASGQIATPL 83 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCcc---ccCCCCEEEEEEeCCccHHHH----hhhhccccccCcchhhcccchHHHHHHHHHh
Confidence 678999999999999999843 223455699999886654321 1122334567888888888899999999999
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
|++||+++|+++|+|++.||++|.++|++|++|.+||+|+|....+.........+.+ .|+..++||+...+|++
T Consensus 84 gl~g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~ 158 (332)
T cd00825 84 GIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALS-----TPEKASRTFDAAADGFV 158 (332)
T ss_pred CCCCCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhcccc-----CCCCCCCCCCCCCCCEE
Confidence 9999999999999999999999999999999999999999987666543322222222 36778999999999999
Q ss_pred ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccC
Q 008700 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAG 474 (557)
Q Consensus 395 ~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~ 474 (557)
+|||++++||++.+.|+++|.++|++|.+++..+++.+...+.+....+.++++++|+++|++++||||++.|+++++..
T Consensus 159 ~gdGaaA~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~ 238 (332)
T cd00825 159 FGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIG 238 (332)
T ss_pred EEeeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCC
Confidence 99999999999999999999999999999999888876665566778899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 008700 475 DIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAV 537 (557)
Q Consensus 475 D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~ 537 (557)
|..|.+++...++.. ++++.+.|..+||+.+|+++++++++++.++++.+||++|++++++.
T Consensus 239 ~~~e~~~~~~~~~~~-~~~~~~~~~~~G~~~aas~~~~l~~~~~~~~~~~~p~~~~~~~~~~~ 300 (332)
T cd00825 239 DVKELKLLRSEFGDK-SPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEA 300 (332)
T ss_pred CHHHHHHHHHHhCCC-CceeECCCcccccchhHhHHHHHHHHHHHHhcCccCCCCCCCCCCcc
Confidence 999999999888754 57889999999999999999999999999999999999999999883
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=231.97 Aligned_cols=223 Identities=34% Similarity=0.501 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
.+.|+.+++++||+++|+++++++ +|++|+..++. ..+..+.+++..+
T Consensus 7 ~~~l~~~A~~~al~~ag~~~~~i~-------~li~~~~~~~~-------------------------~~~~~a~~i~~~l 54 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSKGPIV-------GVIVGTTGGSG-------------------------EFSGAAGQLAYHL 54 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCce-------EEEEEECCCCc-------------------------cccHHHHHHHHHh
Confidence 678999999999999999987666 89999865321 1355678999999
Q ss_pred CC-CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 315 GW-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl-~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
|+ ++|+++|+++|+|++.||+.|+++|+.|++|.+||+|+|. +
T Consensus 55 g~~~~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~------------------------------------~ 98 (254)
T cd00327 55 GISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE------------------------------------F 98 (254)
T ss_pred CCCCCCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce------------------------------------e
Confidence 99 8999999999999999999999999999999999999997 4
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCcc
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPA 473 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~ 473 (557)
++|||++++||++.+.+.+++.+++++|.++....++.+.. +.+....+.++++++|+++|++++|||++++|++++..
T Consensus 99 ~~gdGAaa~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~ 177 (254)
T cd00327 99 VFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMV-PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPI 177 (254)
T ss_pred eecceEEEEEECcHHHHHHCCCceEEEEEEEEEcCCCCCCC-CCCChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCcc
Confidence 68999999999999999999999999999998877655332 34567788999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCC
Q 008700 474 GDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHP 527 (557)
Q Consensus 474 ~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp 527 (557)
.|..|.+.....++.. .+++.+.+..+||+.+|+|+..+.+++.+++++.+||
T Consensus 178 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~as~~~~l~~~~~~~~~~~~~~ 230 (254)
T cd00327 178 GDAVELALGLDPDGVR-SPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPP 230 (254)
T ss_pred ccHHHHHHHHHHhCCC-CCceeccccccccchHHHHHHHHHHHHHHHhCCCcCC
Confidence 9999988776665543 3678999999999999999999999999999999998
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=227.89 Aligned_cols=244 Identities=20% Similarity=0.281 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+.... +. ....+..++..+|
T Consensus 27 ~~La~~A~~~AL~~agl~~~dID-------~vi~g~~~~~------------------------~~-~~~~a~~va~~lG 74 (393)
T PRK05656 27 VELGAAVIRRLLEQTGLDPAQVD-------EVILGQVLTA------------------------GA-GQNPARQAAIKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEEecCC------------------------CC-CCcHHHHHHHHcC
Confidence 56899999999999999999888 7899875310 01 1124567889999
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh----------------HHHH------HH---
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------------LGGF------VA--- 368 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~----------------~~~~------~~--- 368 (557)
+. -|.++|+++|+|++.||+.|+++|++|.+|++||+|+|.+..... +..+ ..
T Consensus 75 l~~~~p~~~V~~~Casg~~ai~~A~~~I~sG~~d~vLv~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05656 75 LPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAFND 154 (393)
T ss_pred CCCCcceEEecccchhHHHHHHHHHHHHHcCCCCEEEEEEEhhhccCccccccccccccccchhhhhhhccccccccccC
Confidence 96 499999999999999999999999999999999999997643110 0000 00
Q ss_pred --hhhhh---------------------cc---CCCCCCCC-------------------------------------CC
Q 008700 369 --CRALS---------------------QR---NNDPTKAS-------------------------------------RP 385 (557)
Q Consensus 369 --~~~Ls---------------------~~---~~~p~~~~-------------------------------------rp 385 (557)
++..+ +. ...|.+.. +|
T Consensus 155 ~~~a~~a~~~~~~~gitre~~d~~Av~sh~~a~~a~~~a~~~~ei~pv~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 234 (393)
T PRK05656 155 YHMGITAENLVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITPILIPQRKGEPLAFATDEQPRAGTTAESLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEEeccCCCCceEeccCCCCCCCCCHHHHhcCCC
Confidence 00000 00 00011100 01
Q ss_pred CcCCCCCce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 008700 386 WDINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 458 (557)
Q Consensus 386 fd~~~dG~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~ 458 (557)
+-. .+|.+ ++|||+++||++++.|+++|.+++++|.|++... ..|.+.+.+...+++++|+++|+++
T Consensus 235 ~~~-~~g~lt~~~~s~~~DGAaa~vl~s~~~A~~~g~~~~a~i~g~~~~~-----~~~~~~~~~~~~a~~~al~~agl~~ 308 (393)
T PRK05656 235 AFK-KDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAG-----VDPAIMGIGPVSATRRCLDKAGWSL 308 (393)
T ss_pred CcC-CCCCEEccccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEec-----CCCcccchhHHHHHHHHHHHcCCCH
Confidence 100 23445 8999999999999999999999999999998864 3455556677899999999999999
Q ss_pred CCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 459 ~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+|||++|+|++ +..|..++.+.|+-. .++++++.|..+||++||+|+.++++++++|+.
T Consensus 309 ~dId~~e~~d~-----f~~~~~~~~e~lg~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~l~~~l~~ 368 (393)
T PRK05656 309 AELDLIEANEA-----FAAQSLAVGKELGWDAAKVNVNGGAIALGHPIGASGCRVLVTLLHEMIR 368 (393)
T ss_pred HHCCEEEecCc-----cHHHHHHHHHHhCCCCccCCcCCCHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 99999999975 556777778888843 468899999999999999999999999999974
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=223.46 Aligned_cols=243 Identities=21% Similarity=0.321 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.++.+++|+|+|+++++|| .|++|+..... .....+..++...|
T Consensus 28 ~~L~~~a~~~al~~agi~~~~Id-------~vv~G~~~~~~-------------------------~g~~~~r~~~~~~G 75 (392)
T PRK06633 28 PMLAAHLIKDILQNSKIDPALVN-------EVILGQVITGG-------------------------SGQNPARQTLIHAG 75 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-------EEEEEecCccc-------------------------cccHHHHHHHHHCC
Confidence 45789999999999999999888 69999754211 12234566778899
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhh--------HH---H-----HHH--------
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG--------LG---G-----FVA-------- 368 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~--------~~---~-----~~~-------- 368 (557)
+. -|.++|+++|+||+.|+..|+++|++|++|++||||+|.+.. |.. +. . +..
T Consensus 76 l~~~~p~~~V~~~CaSG~~Ai~~A~~~I~sG~~dvvla~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (392)
T PRK06633 76 IPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGMHGSYIRAGAKFGDIKMVDLMQYDGLTDVFSGV 155 (392)
T ss_pred CCCCccchhhcchhHHHHHHHHHHHHHHHcCCCCEEEEcccccCCCCCcchhcccccccCcchhhhhhcccccccccCcc
Confidence 95 499999999999999999999999999999999999998752 210 00 0 000
Q ss_pred -hhhhhc------------------------------c-CCC---CC--------------CCC------------C-CC
Q 008700 369 -CRALSQ------------------------------R-NND---PT--------------KAS------------R-PW 386 (557)
Q Consensus 369 -~~~Ls~------------------------------~-~~~---p~--------------~~~------------r-pf 386 (557)
++..++ . ... |. ... + .|
T Consensus 156 ~~a~~a~~~~~~~gitre~~d~~Avksh~~a~~np~A~~~~~ei~p~~v~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~~ 235 (392)
T PRK06633 156 FMGITAENISKQFNISRQEQDEFALSSHKKAAKAQLAGIFKDEILPIEVTIKKTTSLFDHDETVRPDTSLEILSKLRPAF 235 (392)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCcCceeeEEeccCCCceeeccCCCCCCCCCHHHHccCCCcc
Confidence 000000 0 000 00 000 1 11
Q ss_pred cC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 008700 387 DI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461 (557)
Q Consensus 387 d~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dI 461 (557)
+. ..|...++|||+++||++++.|+++|.+++++|+|++...+. +...+.+...+++++|+++|++++||
T Consensus 236 ~~~g~lt~~n~s~~sDGAaalvl~see~A~~~g~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~Al~~AGl~p~DI 310 (392)
T PRK06633 236 DKNGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGVD-----PSIMGTAPVPASQKALSKAGWSVNDL 310 (392)
T ss_pred CCCCCEechhcCCccCceEEEEEecHHHHHHCCCCeeEEEEEEEEecCC-----cchhchHHHHHHHHHHHHcCCCHHHc
Confidence 11 113356899999999999999999999999999999987542 22333566889999999999999999
Q ss_pred cEEEEcCCCCccCcHHHHHHH--HHHhc-CCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 462 NYINAHATSTPAGDIKEYQAL--IHCFG-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 462 d~ve~hgtgt~~~D~~E~~Al--~~~~~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
||+|+|... .+..+ .+.++ ...++++++.|..+||++||+|+++++.++++|+.
T Consensus 311 D~~ei~daf-------a~~~l~~~~~l~~~~~~vN~sGg~~a~GHplgAtG~~~~~~~~~qL~~ 367 (392)
T PRK06633 311 EVIEVNEAF-------AAQSIYVNREMKWDMEKVNINGGAIAIGHPIGASGGRVLITLIHGLRR 367 (392)
T ss_pred CeeehhhHH-------HHHHHHHHhhhCCCccccCCCCchHhhCCcHHHHHHHHHHHHHHHHHh
Confidence 999988433 33333 12223 22468899999999999999999999999999986
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-25 Score=193.65 Aligned_cols=115 Identities=39% Similarity=0.608 Sum_probs=98.5
Q ss_pred eEEEEEEEEecCC-CCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC---CCcc
Q 008700 418 YAEFRGGSFTSDA-YHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN---RGLR 493 (557)
Q Consensus 418 ~a~I~G~~~~~d~-~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~---~~~~ 493 (557)
||+|+|+++++|+ .+...+.|++.++.++|+++|+++|++|+||||||+||+||+.+|..|.++|.++|+.. .+++
T Consensus 1 ya~i~g~~~~~dg~~~~~~~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~~~~~~~ 80 (119)
T PF02801_consen 1 YAVIRGYGVNSDGARSSSLTAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSARQQPVP 80 (119)
T ss_dssp SEEEEEEEEEE-SSSTSSSSSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGGGTSTSE
T ss_pred CEEEEEEEEECCCCCCCCCcCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccccccccc
Confidence 7999999999999 78888899999999999999999999999999999999999999999999999999865 3699
Q ss_pred cccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCC
Q 008700 494 VNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLE 532 (557)
Q Consensus 494 v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~ 532 (557)
|++.|+++||+++|+|++++++++++|+++++||++|++
T Consensus 81 v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~n~~ 119 (119)
T PF02801_consen 81 VGSVKSNIGHTEAASGLLSLAKALLALEHGTIPPTINFE 119 (119)
T ss_dssp EE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT-S
T ss_pred eeccccccccccccchHHHHHHHHHHHhcCCCCCCcCCC
Confidence 999999999999999999999999999999999999986
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=216.12 Aligned_cols=246 Identities=22% Similarity=0.321 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+..... ......+..++..+|
T Consensus 28 ~eL~~~A~~~AL~~agi~~~dID-------~vi~g~~~~~~------------------------~~~~~~a~~~~~~~G 76 (394)
T PRK09051 28 TDLGATVVREALARAGVDPDQVG-------HVVFGHVIPTE------------------------PRDMYLSRVAAINAG 76 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-------EEEEeeecccc------------------------CCCccHHHHHHHHcC
Confidence 56899999999999999999888 68898754211 011223445566678
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh----------------HH----HHHH-----
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------------LG----GFVA----- 368 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~----------------~~----~~~~----- 368 (557)
+. .|.++|+++|+|++.|++.|+++|++|.+|++||+|+|.+..... .. .+..
T Consensus 77 l~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLvvG~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T PRK09051 77 VPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAESMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTI 156 (394)
T ss_pred CCCCCceEEecccchHHHHHHHHHHHHHHcCCCCEEEEEeehhcccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 84 599999999999999999999999999999999999998653210 00 0000
Q ss_pred -hhhhh---------------------c----cC-----------------------CCCCCCCC------------CCc
Q 008700 369 -CRALS---------------------Q----RN-----------------------NDPTKASR------------PWD 387 (557)
Q Consensus 369 -~~~Ls---------------------~----~~-----------------------~~p~~~~r------------pfd 387 (557)
++..+ + .+ .+|+...| |+.
T Consensus 157 ~~~~~a~~~~~~ygitre~~d~~avksh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~~~da~~r~~~t~e~v~~~~~v~ 236 (394)
T PRK09051 157 HMGVTAENVAAKYGISREAQDALALESHRRAAAAIAAGYFKDQIVPVEIKTRKGEVVFDTDEHVRADTTLEDLAKLKPVF 236 (394)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeecCCCCCeEECCCCCCCCCCCHHHHcCCCCcc
Confidence 00000 0 00 01333222 222
Q ss_pred CC-------CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 008700 388 IN-------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 388 ~~-------~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~d 460 (557)
.. .|...++|||+++||++++.|+++|.+++++|+|++..... +.....+...+++++|+++|++++|
T Consensus 237 ~~~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~g~~~~~~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~agi~~~d 311 (394)
T PRK09051 237 KKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVD-----PEYMGIGPVPATQKALERAGLTVAD 311 (394)
T ss_pred cCCCccEeCCcCCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEeccC-----CCcccccHHHHHHHHHHHcCCCHHH
Confidence 11 13344689999999999999999999999999999987532 2334456789999999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
||+||+|+++ .++..+..+.||-. .++++++.+..+||++||+|+..+++++.+|+.
T Consensus 312 id~~ei~d~f-----~~~~~~~~e~lg~~~~~vN~~GG~~a~Ghp~gAsG~~~~~~~~~~L~~ 369 (394)
T PRK09051 312 LDVIEANEAF-----AAQACAVTRELGLDPAKVNPNGSGISLGHPVGATGAIITVKALYELQR 369 (394)
T ss_pred cCEEEecCcc-----HHHHHHHHHHhCCCccccCCCccHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 9999999753 34555566677743 467777777789999999999999999999986
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=220.40 Aligned_cols=256 Identities=23% Similarity=0.323 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+|+|++++++| +|++|+..++... .....+..++..+
T Consensus 22 ~~eLa~~a~~~Al~dagl~~~~Id-------~vi~g~~~~~~~~-----------------------~~~~~a~~va~~l 71 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGIDGKDID-------AMYVGNMSAGLFV-----------------------SQEHIAALIADYA 71 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccccccc-----------------------ccccHHHHHHHHc
Confidence 366899999999999999998777 7888875322110 0112467788999
Q ss_pred CCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh---h----------------------HHHHHH
Q 008700 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI---G----------------------LGGFVA 368 (557)
Q Consensus 315 gl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~---~----------------------~~~~~~ 368 (557)
|++ +|.++|+++|+|++.||..|+++|++|++|++||+|+|.+.... . ..++..
T Consensus 72 Gl~~~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a 151 (389)
T PRK06064 72 GLAPIPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALIA 151 (389)
T ss_pred CCCCCCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHHH
Confidence 997 69999999999999999999999999999999999998643110 0 000000
Q ss_pred hhhhhc----------------c--CCCCCCC----------------CCCCcCCCCCceecCceEEEEEcchHHHHhcC
Q 008700 369 CRALSQ----------------R--NNDPTKA----------------SRPWDINRDGFVMGEGAGVLLLEELEHAKKRG 414 (557)
Q Consensus 369 ~~~Ls~----------------~--~~~p~~~----------------~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G 414 (557)
.+.+.+ . ..+|... +.|+. .-|...++|||+++||++++.|++++
T Consensus 152 ~~~~~~yG~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~-~~d~~~~~dGAaa~vL~s~~~A~~~~ 230 (389)
T PRK06064 152 RRYMHKYGTTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLK-LLDCSPITDGAAAVILASEEKAKEYT 230 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCc-hhhcCCCCCcceEEEEecHHHHHHhc
Confidence 000000 0 0011110 01111 23566789999999999999999988
Q ss_pred CeeeEEEEEEEEecCCCCCCCC-C-CChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhc-----
Q 008700 415 AKIYAEFRGGSFTSDAYHMTEP-H-PDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFG----- 487 (557)
Q Consensus 415 ~~i~a~I~G~~~~~d~~~~~~~-~-p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~----- 487 (557)
.++ ++|+|++..++..+.... . +...+...+++++|+++|++++|||++|+|+++|. .+.++.+++.-+..
T Consensus 231 ~~~-v~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~aGi~~~did~~e~~d~ft~-~~~~~~e~lgl~~~G~~~~ 308 (389)
T PRK06064 231 DTP-VWIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTI-AEILAYEDLGFAKKGEGGK 308 (389)
T ss_pred CCC-eEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCCCcH-HHHHHHHHcCCCCCCchHH
Confidence 655 589999998877654332 1 23456778999999999999999999999999998 35666666632210
Q ss_pred ---C-----CCCcccccCccc--ccchhhhHHHHHHHHHHHHHHcC
Q 008700 488 ---Q-----NRGLRVNSTKSM--IGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 488 ---~-----~~~~~v~s~K~~--iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+ ...++++..++. .||+.+|+|+.+++++++||+.+
T Consensus 309 ~~~~g~~~~~g~~pvN~~GG~l~~Ghp~~a~G~~~~~e~~~qL~g~ 354 (389)
T PRK06064 309 LAREGQTYIGGDIPVNPSGGLKAKGHPVGATGVSQAVEIVWQLRGE 354 (389)
T ss_pred HHHCCCccCCCCeeecCCCCcccCCCCcchhHHHHHHHHHHHHhCC
Confidence 0 113566666665 69999999999999999999975
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=218.05 Aligned_cols=246 Identities=22% Similarity=0.310 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+|+|+++++|| +|++|+..... .....+..++..+
T Consensus 22 ~~~La~~A~~~AL~dAgl~~~dID-------~vi~~~~~~~~-------------------------~~~~~a~~v~~~l 69 (386)
T cd00751 22 ADDLGAAVIKALLERAGLDPEEVD-------DVIMGNVLQAG-------------------------EGQNPARQAALLA 69 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC-------EEEEEeccCCC-------------------------CCChHHHHHHHHc
Confidence 367999999999999999998888 78888643211 0122355688889
Q ss_pred CCCC--CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh-h----------------------H------
Q 008700 315 GWMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI-G----------------------L------ 363 (557)
Q Consensus 315 gl~G--p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~-~----------------------~------ 363 (557)
|++. |.++|+++|+|++.+|..|+++|++|++|.+||+|+|.+.... . +
T Consensus 70 Gl~~~~~~~~v~~~c~s~~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (386)
T cd00751 70 GLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPYLLPKARRGGRLGLNTLDGMLDDGLTDPFTG 149 (386)
T ss_pred CCCCCCchhhhccccHHHHHHHHHHHHHHHCCCCCeEEEeeeeccccCcccccccccccccCccccccccccccccccCC
Confidence 9964 9999999999999999999999999999999999998752210 0 0
Q ss_pred --HHHHHhhhhhc--------------------cCC-----------------------CCCCCCC------------CC
Q 008700 364 --GGFVACRALSQ--------------------RNN-----------------------DPTKASR------------PW 386 (557)
Q Consensus 364 --~~~~~~~~Ls~--------------------~~~-----------------------~p~~~~r------------pf 386 (557)
+++...+.+.+ .+. .|+...| |.
T Consensus 150 ~~~a~~a~~~~~~yg~tre~la~vav~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~r~~~t~e~v~~s~~i 229 (386)
T cd00751 150 LSMGITAENVAEKYGISREEQDEFALRSHQRAAAAQEAGRFKDEIVPVEVPGRKGPVVVDRDEGPRPDTTLEKLAKLKPA 229 (386)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCCCC
Confidence 00000000000 000 0111111 11
Q ss_pred -c-----CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 008700 387 -D-----INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 387 -d-----~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~d 460 (557)
+ ...|...++||++++||++++.|++++.+++++|+|++.+++... +...+...+++++|+++||+|+|
T Consensus 230 ~~p~g~l~~~d~~~~~dGaaavvl~s~~~a~~~~~~~~~~I~g~~~~~~~~~-----~~~~~~~~a~~~a~~~Agi~~~d 304 (386)
T cd00751 230 FKKDGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPA-----IMGIGPVPAIPKALKRAGLTLDD 304 (386)
T ss_pred cCCCCcEeCCcCCCCCcceEEEEEecHHHHHHCCCCeeEEEEEEEEccCCCc-----ccchhHHHHHHHHHHHcCCCHHH
Confidence 1 123556689999999999999999999999999999998876432 23446679999999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
||++|+|++++. .|... .+.||-. .++++++.+..+||+.+|+|+.+++++++||+.
T Consensus 305 id~~e~~d~f~~----~~~~~-~e~lg~~~~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL~g 362 (386)
T cd00751 305 IDLIEINEAFAA----QALAC-LKELGLDPEKVNVNGGAIALGHPLGASGARIVVTLLHELKR 362 (386)
T ss_pred cCEEEeechhHH----HHHHH-HHHhCCChhhcCCCcchHhhCccHHHHHHHHHHHHHHHHHh
Confidence 999999987764 22222 3445532 357788888899999999999999999999986
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-23 Score=216.95 Aligned_cols=247 Identities=19% Similarity=0.235 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+|+|+++++|| .|++|+...+. ..+..++..++..+
T Consensus 27 ~~dL~~~A~~~aL~~agi~~~~ID-------~vi~G~~~~~~------------------------~~~~~~a~~i~~~l 75 (392)
T PRK07108 27 GATLGGHVVQHAVERAKLDPAEVE-------DVIMGCANPEG------------------------ATGANIARQIALRA 75 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------cEEEEEeeccc------------------------ccccHHHHHHHHHc
Confidence 467999999999999999999887 58999764211 11123677888888
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh----------HHH------HHHhhh-----
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------LGG------FVACRA----- 371 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~----------~~~------~~~~~~----- 371 (557)
|+. .|+++|+++|+||+.||+.|+++|++|++|++||||+|.+..... ... +..++.
T Consensus 76 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vlagGvE~ms~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~ 155 (392)
T PRK07108 76 GLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISCVQNEMNRHMLREGWLVEHKPEIYWSMLQTAENV 155 (392)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCCCcCCCcCccchhhhccCCccccCHHHHHHHH
Confidence 985 799999999999999999999999999999999999998753210 000 000000
Q ss_pred ----------------hhc-------c--------------C--CCCCC--------------C------------CC-C
Q 008700 372 ----------------LSQ-------R--------------N--NDPTK--------------A------------SR-P 385 (557)
Q Consensus 372 ----------------Ls~-------~--------------~--~~p~~--------------~------------~r-p 385 (557)
.++ . + .+|.. . .+ +
T Consensus 156 a~~~~i~r~~~d~~a~~s~~~A~~A~k~g~~~~ei~pv~~~~~~~n~~a~~~~~~~~~~~~de~~r~~~t~e~l~~l~~~ 235 (392)
T PRK07108 156 AKRYGISKERQDEYGVQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSA 235 (392)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCceeeEEecccccccccCcccccceeEccCCCCCCCCCHHHHhcCCCC
Confidence 000 0 0 01211 0 01 1
Q ss_pred Cc----CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCc
Q 008700 386 WD----INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461 (557)
Q Consensus 386 fd----~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dI 461 (557)
|. ...|...++|||+++||++++.|+++|.+++++|+|++...+ .|.+.+.+...+++++|+++|++++||
T Consensus 236 ~~~g~lt~~n~~~~~DGAaa~vl~s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~Di 310 (392)
T PRK07108 236 LPGGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGC-----EPDEMGIGPVFAVPKLLKQAGLKVDDI 310 (392)
T ss_pred CCCCCCcCCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecc-----CCcccchhHHHHHHHHHHHcCCCHHHc
Confidence 21 012455689999999999999999999999999999988753 244445567899999999999999999
Q ss_pred cEEEEcCCCCccCcHHHHHHHHHHhc-CCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 462 NYINAHATSTPAGDIKEYQALIHCFG-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 462 d~ve~hgtgt~~~D~~E~~Al~~~~~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
|++|.|...+. .|+..+ +.++ ...++++++.+..+||+.||+|+..++.++.+|++
T Consensus 311 d~~ei~eafa~----~~l~~~-e~lg~~~~~vN~~GG~~a~GHp~gatG~r~~~~l~~~l~~ 367 (392)
T PRK07108 311 DLWELNEAFAV----QVLYCR-DTLGIPMDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKR 367 (392)
T ss_pred CchHhhhHHHH----HHHHHH-HhcCCCccccCCCCChHHhCcchhhhHHHHHHHHHHHHHh
Confidence 99998854443 122222 2233 22468899999999999999999999999999976
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=212.35 Aligned_cols=246 Identities=18% Similarity=0.233 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.++++++|+++|+++++|| -|++|+.... +...+..+...+...|
T Consensus 29 ~dLa~~A~~~al~~agi~p~~ID-------~vi~G~~~~~------------------------~~~~~~~~r~a~~~~G 77 (402)
T PRK08242 29 VRLAAGLLEALRDRNGLDTAAVD-------DVVLGCVTPV------------------------GDQGADIARTAVLAAG 77 (402)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-------EEEEEecCCC------------------------ccccccHHHHHHHHcC
Confidence 45888999999999999999888 6899976421 1112334555667778
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhh----------HHH----HHHhhhhh-----
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG----------LGG----FVACRALS----- 373 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~----------~~~----~~~~~~Ls----- 373 (557)
+ +-|.++|+.+|+|++.||..|+++|++|.+|++|++|+|.+.. |.. ... +..++..+
T Consensus 78 l~~~~pa~~Vn~aCaSg~~Ai~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~mg~~Ae~~a~ 157 (402)
T PRK08242 78 LPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMSRVPMGSDGGAWAMDPSTNFPTYFVPQGISADLIAT 157 (402)
T ss_pred CCCCCCeEEEcchhhhHHHHHHHHHHHHHcCCCCEEEEEEEEccCCCcccccCcccccCcccccccccCCHHHHHHHHHH
Confidence 8 3599999999999999999999999999999999999998754 210 000 00001000
Q ss_pred --------------------c-----------------c-C---CCCCCCCC------------C-CcCC----------
Q 008700 374 --------------------Q-----------------R-N---NDPTKASR------------P-WDIN---------- 389 (557)
Q Consensus 374 --------------------~-----------------~-~---~~p~~~~r------------p-fd~~---------- 389 (557)
. . + .+++...| | |+..
T Consensus 158 ~~gisRe~~d~~A~~Sh~~A~~A~~~g~f~~ei~pv~~~~~~~~~~~de~~r~~~t~e~l~~l~p~f~~~~~~~g~~~~~ 237 (402)
T PRK08242 158 KYGFSREDVDAYAVESQQRAAAAWAEGYFAKSVVPVKDQNGLTILDHDEHMRPGTTMESLAKLKPSFAMMGEMGGFDAVA 237 (402)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeecCCCCEeeCCCCCCCCCCCHHHHhCCCCCccCccccCcccccc
Confidence 0 0 0 12333222 2 3321
Q ss_pred ----------------CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH
Q 008700 390 ----------------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAH 453 (557)
Q Consensus 390 ----------------~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~ 453 (557)
.|...++|||+++||++++.|+++|.+++++|.|++...+... ....+...+++++|++
T Consensus 238 ~~~~~~~~~~~~~vTagn~s~~~DGAaAlvl~s~e~A~~~g~~p~a~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~ 312 (402)
T PRK08242 238 LQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVATATIGSDPT-----IMLTGPVPATRKALAK 312 (402)
T ss_pred cccccccccccCceecCcCCCCCCceEEEEEecHHHHHHcCCCCcEEEEEEEEecCCch-----hhcccHHHHHHHHHHH
Confidence 0334689999999999999999999999999999988754321 1233446799999999
Q ss_pred cCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 454 SGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 454 Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+|++++|||++|+|..++. .+.. ..+.||- ..++++++.+..+|||+||+|+.+++.++++|++
T Consensus 313 AGl~~~DID~~ei~daFa~----~~l~-~~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~~ 377 (402)
T PRK08242 313 AGLTVDDIDLFELNEAFAS----VVLR-FMQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELER 377 (402)
T ss_pred cCCCHHHCCEEEecchhhH----HHHH-HHHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999998855444 1222 2345552 3468899999999999999999999999999975
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=212.53 Aligned_cols=244 Identities=22% Similarity=0.325 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+.+++|| .|++|+...+. ......+..++..+|
T Consensus 28 ~eLa~~A~~~AL~~ag~~~~dID-------~vi~g~~~~~~------------------------~~g~~~a~~~~~~lG 76 (391)
T PRK07661 28 DDLGALVVKETLKRAGNYEGPID-------DLIIGCAMPEA------------------------EQGLNMARNIGALAG 76 (391)
T ss_pred HHHHHHHHHHHHHhcCCChhHCC-------EEEEEeccccc------------------------cccchHHHHHHHHcC
Confidence 56899999999999998777777 68888653210 001223556888899
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-----------------H---HHHHHhhhhh
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-----------------L---GGFVACRALS 373 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-----------------~---~~~~~~~~Ls 373 (557)
+. -|.++|+++|+||+.|+..|+++|++|++|++||+|+|.+..... + +++...+...
T Consensus 77 l~~~~p~~~V~~aCaSG~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~m~~~a~~~~~ 156 (391)
T PRK07661 77 LPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVPMMGHVVRPNPRLVEAAPEYYMGMGHTAEQVAV 156 (391)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEEEEeecccCCccccccCCCccccccccchhhhHHHHHHHHHH
Confidence 97 499999999999999999999999999999999999998653210 0 0000000000
Q ss_pred ----------------------c-cC---CC---C----C------C-------------CC------------CC-Cc-
Q 008700 374 ----------------------Q-RN---ND---P----T------K-------------AS------------RP-WD- 387 (557)
Q Consensus 374 ----------------------~-~~---~~---p----~------~-------------~~------------rp-fd- 387 (557)
. .. .. | + + .. +| |.
T Consensus 157 ~~g~tre~~a~~av~s~~~a~~n~~ag~~~~ei~pi~~~~~~~~~~~~~~~~~~~~~~d~~~rp~~~~e~l~~l~p~f~~ 236 (391)
T PRK07661 157 KYGISREDQDAFAVRSHQRAAKALAEGKFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFNV 236 (391)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeecccccccccCcccccceeEecCCCCCCCCCHHHHhcCCCCcCC
Confidence 0 00 00 0 0 0 00 11 11
Q ss_pred ----CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 008700 388 ----INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463 (557)
Q Consensus 388 ----~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ 463 (557)
...|...++|||+++||++++.|++.|.+++++|+|++...+. +.+.+.+...+++++|+++|++++|||+
T Consensus 237 ~g~lt~~~~~~~~DGAaavvl~s~~~A~~~g~~~~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~did~ 311 (391)
T PRK07661 237 KGSVTAGNSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGVP-----PEVMGIGPIAAIPKALKLAGLELSDIGL 311 (391)
T ss_pred CCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEecCC-----CcccchHHHHHHHHHHHHcCCCHHHCCE
Confidence 1234455899999999999999999999999999999987542 3334456789999999999999999999
Q ss_pred EEEcCCCCccCcHHHHHHHHH--HhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 464 INAHATSTPAGDIKEYQALIH--CFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 464 ve~hgtgt~~~D~~E~~Al~~--~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
||+| |..+...+.. .|+- ..++++++.+..+||+.||+|+.++++++++|++
T Consensus 312 ~ei~-------d~f~~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~~ 366 (391)
T PRK07661 312 FELN-------EAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKR 366 (391)
T ss_pred EEeC-------CHHHHHHHHHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9976 6666666653 5663 2467888999999999999999999999999985
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=214.18 Aligned_cols=246 Identities=18% Similarity=0.283 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+..... ......+..++..+|
T Consensus 72 ~eLa~eA~~~AL~dAgl~~~dID-------~vv~G~~~~~~------------------------~~~~~~~r~~a~~~G 120 (452)
T PLN02287 72 DDLLAPVLKAVVEKTGLNPSEVG-------DIVVGTVLAPG------------------------SQRANECRMAAFYAG 120 (452)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeecCcc------------------------cccchHHHHHHHHCC
Confidence 66899999999999999999888 68888753211 011123345677789
Q ss_pred CCC--CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh---------HHHHH-------Hhhhhh----
Q 008700 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG---------LGGFV-------ACRALS---- 373 (557)
Q Consensus 316 l~G--p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~---------~~~~~-------~~~~Ls---- 373 (557)
+.. |.++|+++|+||+.||..|+++|++|.+|++||+|+|.+..... +..+. .++...
T Consensus 121 l~~~~pa~~V~~~CaSG~~Ai~~Aa~~I~sG~~dvvLv~GvE~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~y~ 200 (452)
T PLN02287 121 FPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVNPRVESFSQAQDCLLPMGITSENVA 200 (452)
T ss_pred CCCCcceEEEeccCchHHHHHHHHHHHHHcCCCCeEEEEeEEecCCCchhhccccCchhhccccccccCcCHHHHHHHHH
Confidence 964 88999999999999999999999999999999999997643210 00000 000000
Q ss_pred -c----------------c--CCCCCC-------------------------------CC------------CC-CcC--
Q 008700 374 -Q----------------R--NNDPTK-------------------------------AS------------RP-WDI-- 388 (557)
Q Consensus 374 -~----------------~--~~~p~~-------------------------------~~------------rp-fd~-- 388 (557)
+ . ...|.. .. +| |+.
T Consensus 201 ~~yGitrE~la~vAvksh~nAa~np~ag~f~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~~~e~l~~l~~v~~~~g 280 (452)
T PLN02287 201 ERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVPVHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNG 280 (452)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeeeeccccccccCCccceeecccCCCCCCCCHHHHhcCCCccCCCC
Confidence 0 0 000110 00 01 111
Q ss_pred ---CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 008700 389 ---NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYIN 465 (557)
Q Consensus 389 ---~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve 465 (557)
-.|...++|||+++||++++.|++++.+|++++.+++... ..|.+.+.+...+++++|+++|++++|||++|
T Consensus 281 ~lt~~~~s~~sDGAaalvl~see~A~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~A~~~al~~Agl~~~DID~~E 355 (452)
T PLN02287 281 TTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPILGVFRSFAAVG-----VDPAVMGIGPAVAIPAAVKAAGLELDDIDLFE 355 (452)
T ss_pred CEeccccCCcCCceEEEEEeeHHHHHHCCCCeEEEEEEEeecc-----CCCccchHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 0255568999999999999999999999999999977432 12444455678999999999999999999999
Q ss_pred EcCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 466 AHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 466 ~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+|..++. .|+..++ .||- ..++++++.+..+||++||+|+.+++.++++|++
T Consensus 356 i~daFa~----~~l~~~e-~lG~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~~ 408 (452)
T PLN02287 356 INEAFAS----QFVYCCK-KLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKR 408 (452)
T ss_pred ecchHHH----HHHHHHH-HcCCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHHHh
Confidence 9965554 2332222 3442 2468889999999999999999999999999976
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=212.68 Aligned_cols=246 Identities=21% Similarity=0.303 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+.... . .....+..+...+|
T Consensus 27 ~~La~~A~~~AL~dAgl~~~dID-------~vi~g~~~~~------------------------~-~~~~~~~~~~~~~g 74 (393)
T PRK05790 27 VELGAIVIKAALERAGVPPEQVD-------EVIMGQVLQA------------------------G-AGQNPARQAALKAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------eEEEEEecCC------------------------C-CCCcHHHHHHHHcC
Confidence 67899999999999999999888 7888875310 0 01112333555677
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh---------------H---------------
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG---------------L--------------- 363 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~---------------~--------------- 363 (557)
+. .|.++|+.+|+|++.||..|+++|++|.+|++||+|+|.+..... .
T Consensus 75 l~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK05790 75 LPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQAPHVLPGSRWGQKMGDVELVDTMIHDGLTDAFNG 154 (393)
T ss_pred CCCCCceeeecccchHHHHHHHHHHHHHHcCCCCEEEEEeeeccccCcccccccccccccCcchhhhhhcccccccccCC
Confidence 74 589999999999999999999999999999999999997521100 0
Q ss_pred --HHHHHhhhhh--------------------cc--CC----------------------CCCCCCC------C------
Q 008700 364 --GGFVACRALS--------------------QR--NN----------------------DPTKASR------P------ 385 (557)
Q Consensus 364 --~~~~~~~~Ls--------------------~~--~~----------------------~p~~~~r------p------ 385 (557)
+++...+.+. .. +. +++...+ |
T Consensus 155 ~~~a~~a~~y~~~yG~tre~la~vav~~~~~A~~~~~~g~~~~~i~P~~~~~~~~~~~~~~~d~~~~~~~~~e~l~~~~~ 234 (393)
T PRK05790 155 YHMGITAENLAEQYGITREEQDEFALASQQKAEAAIKAGRFKDEIVPVTIKQRKGDPVVVDTDEHPRPDTTAESLAKLRP 234 (393)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeEEecCCCCCceEecCCCCCCCCCCHHHHhCCCC
Confidence 0000000000 00 00 0000000 1
Q ss_pred -CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 008700 386 -WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459 (557)
Q Consensus 386 -fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~ 459 (557)
|+. ..|...++|||+++||++++.|++.+.+++++|+|++.... .+.....+...+++++|+++|++++
T Consensus 235 v~~~~g~lt~~d~~~~~DGAaavvl~s~e~a~~~~~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~a~~~Agi~~~ 309 (393)
T PRK05790 235 AFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGV-----DPAIMGIGPVPAIRKALEKAGWSLA 309 (393)
T ss_pred ccCCCCCEeCCcCCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEccC-----CCCccchhHHHHHHHHHHHcCCCHH
Confidence 111 01566789999999999999999999999999999988743 2222334567899999999999999
Q ss_pred CccEEEEcCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 460 DVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 460 dId~ve~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|||++|+|+..+. .+.. ..+.||- ..++++++.+..+||+.||+|+.+++++++||+..
T Consensus 310 did~~e~~d~f~~----~~l~-~~e~lg~~~~pvN~~GG~l~~Ghp~gatG~~~~~e~~~qL~~~ 369 (393)
T PRK05790 310 DLDLIEINEAFAA----QALA-VEKELGLDPEKVNVNGGAIALGHPIGASGARILVTLLHEMKRR 369 (393)
T ss_pred HCCEEEeCcHHHH----HHHH-HHHHhCCChhhcCCCcchhhhCcchhhhHHHHHHHHHHHHHhc
Confidence 9999999865443 1111 2334552 24688899999999999999999999999999863
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=211.43 Aligned_cols=247 Identities=22% Similarity=0.280 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+|+|+++++|| ++++|+..... .....+..++..+
T Consensus 21 ~~~La~~A~~~Al~dAgl~~~dID-------~vv~g~~~~~~-------------------------~~~~~a~~va~~l 68 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPLDPELID-------DVIFGNVLQAG-------------------------EQQNIARQAALLA 68 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccCCC-------------------------CCChHHHHHHHHc
Confidence 467999999999999999998888 78887643110 0012355688888
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh-h----------H--------H---HH----
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI-G----------L--------G---GF---- 366 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~-~----------~--------~---~~---- 366 (557)
|+. .|.+.|+++|+|++.+|..|+++|++|.+|.+||+|+|.+.... . + . ++
T Consensus 69 Gl~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (386)
T TIGR01930 69 GLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYSLPRSRREGVDPGRFELEDQILKDGLTDPL 148 (386)
T ss_pred CCCCCceeeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCccccccccccccccCccccchhhcCccccccc
Confidence 985 48999999999999999999999999999999999988643211 0 0 0 00
Q ss_pred -------HHhhhhhc--------------------cCCC---------CC--------------C-CCCCCc--------
Q 008700 367 -------VACRALSQ--------------------RNND---------PT--------------K-ASRPWD-------- 387 (557)
Q Consensus 367 -------~~~~~Ls~--------------------~~~~---------p~--------------~-~~rpfd-------- 387 (557)
...+.+.+ .+.. |. . ..+|.+
T Consensus 149 ~~~~~a~~a~~y~~~yG~t~e~la~vav~~~~~A~~n~~~g~~~~~i~P~a~~~~~~~~~~~~da~~r~~~t~e~v~~s~ 228 (386)
T TIGR01930 149 NGLSMGLTAENLAKKYGISREEQDEYALRSHQRAAKAWEEGLFKDEIVPVSVKGRKGPVTVSTDEGIRPNTTLEKLAKLK 228 (386)
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeccCCCCeEeCCCCCCCCCCCHHHHhCCC
Confidence 00000000 0000 21 0 001111
Q ss_pred ---------CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 008700 388 ---------INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 458 (557)
Q Consensus 388 ---------~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~ 458 (557)
..-|...++|||+++||++++.|++++.+++++|.|++.... .+.+...+...+++++|+++|++|
T Consensus 229 ~i~~P~~~l~~~d~~~~~dGAaa~vl~s~~~A~~~~~~~~~~i~g~g~~~~-----~~~~~~~~~~~a~~~a~~~Agi~~ 303 (386)
T TIGR01930 229 PAFDPNGTVTAGNSSPLNDGAAALLLMSEERAKELGLTPLARIVSFAVAGV-----DPEIMGLGPVPAIPKALKKAGLSI 303 (386)
T ss_pred CCcCCCCeeeCCccCCCCcceeEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccccHHHHHHHHHHHcCCCH
Confidence 013455579999999999999999999999999999988743 223334456789999999999999
Q ss_pred CCccEEEEcCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 459 ~dId~ve~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+|||++|+|.+++. .|.. ..+.||- ..++++++.+..+||+.+|+|+.+++++++||+..
T Consensus 304 ~did~~e~~d~fa~----~~~~-~~e~lG~~~~pvn~~GG~l~~Ghp~gasG~~~~~e~~~qL~g~ 364 (386)
T TIGR01930 304 SDIDLFEINEAFAA----QVLA-CIKELGLDLEKVNVNGGAIALGHPLGASGARIVTTLLHELKRR 364 (386)
T ss_pred HHCCeeehcchhHH----HHHH-HHHHhCCChhhcCCCCChHhhCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999988765 2222 2234542 33678888999999999999999999999999864
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-22 Score=208.16 Aligned_cols=250 Identities=18% Similarity=0.190 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+..... .....+..++..+|
T Consensus 22 ~eLa~~A~~~AL~dAgi~~~dID-------~vi~g~~~~~~-------------------------~~~~~a~~v~~~lG 69 (385)
T PRK12578 22 QELAWESIKEALNDAGVSQTDIE-------LVVVGSTAYRG-------------------------IELYPAPIVAEYSG 69 (385)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccccc-------------------------ccCChHHHHHHHhC
Confidence 56899999999999999998887 78888653100 01123567888999
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh--------------------------HHHHHH
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG--------------------------LGGFVA 368 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~--------------------------~~~~~~ 368 (557)
+.+ +.++|+++|+|++.||..|+++|++|++|.+||+|+|.+..... +..+..
T Consensus 70 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~a 149 (385)
T PRK12578 70 LTGKVPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYALYA 149 (385)
T ss_pred CCCCCeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHHHH
Confidence 975 77999999999999999999999999999999999997542110 000000
Q ss_pred hhhhhcc------------------CCCCCCCC----------------CCCcCCCCCceecCceEEEEEcchHHHHhcC
Q 008700 369 CRALSQR------------------NNDPTKAS----------------RPWDINRDGFVMGEGAGVLLLEELEHAKKRG 414 (557)
Q Consensus 369 ~~~Ls~~------------------~~~p~~~~----------------rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G 414 (557)
.+.+... ..+|.... .|+ ..-|...++||++++||++++.|++.+
T Consensus 150 ~~~m~~~g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl-~~~d~~~~~DGAaA~vl~s~e~A~~l~ 228 (385)
T PRK12578 150 TRHMAVYGTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPI-KLLDSCPISDGSATAIFASEEKVKELK 228 (385)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCc-cHhhcCCcCCCeEEEEEecHHHHHhcC
Confidence 0000000 00121111 111 123566689999999999999999988
Q ss_pred CeeeEEEEEEEEecCCCCCCC-CCCCh-HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhc--C--
Q 008700 415 AKIYAEFRGGSFTSDAYHMTE-PHPDG-VGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFG--Q-- 488 (557)
Q Consensus 415 ~~i~a~I~G~~~~~d~~~~~~-~~p~~-~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~--~-- 488 (557)
.+++++|+|++..++..+... ++... .+...+++++|+++|++++|||++|+|++++. .|...++.. | .
T Consensus 229 ~~~~~~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~DiD~~ei~d~ft~----~~l~~le~l-Gl~~~G 303 (385)
T PRK12578 229 IDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMAKVTPNDIEVATVHDAFTI----AEIMGYEDL-GFTEKG 303 (385)
T ss_pred CCCCeEEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChH----HHHHHHHHc-CCCCCC
Confidence 777799999998877654332 22222 35678999999999999999999999999996 565555432 2 1
Q ss_pred ---------------CCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 489 ---------------NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 489 ---------------~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+.++++++.--..|||.||+|+.+++++++||+..
T Consensus 304 ~~~~~~~~G~~~~~G~~pvN~~GG~la~GhP~gatG~~~v~e~~~qLrg~ 353 (385)
T PRK12578 304 KGGKFIEEGQSEKGGKVGVNLFGGLKAKGHPLGATGLSMIYEITKQLRDE 353 (385)
T ss_pred chHHHHHCCCccCCCCeeeCCCCCcccCCCCccHHHHHHHHHHHHHHhCC
Confidence 01344444444569999999999999999999864
|
|
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-22 Score=210.81 Aligned_cols=244 Identities=21% Similarity=0.228 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHH-HCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALe-dAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+.++++++|+ ++|+++++|| .||+|+.... +....+++..++...
T Consensus 27 ~~L~~~a~~~al~r~a~i~~~~Id-------~vi~G~~~~~------------------------~~~g~~~ar~~~l~~ 75 (400)
T PRK13359 27 DDLGAVPLKALVERNPDVDWAAID-------DVIYGCANQA------------------------GEDNRNVARMSLLLA 75 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC-------EEEEEecccc------------------------ccccccHHHHHHHHc
Confidence 4578889999999 5799999888 6999975311 111244677888899
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH-------H---------------------
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL-------G--------------------- 364 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~-------~--------------------- 364 (557)
||. -|.++|+++|+||+.|+.+|+++|++|++|++||||+|+|.....+ .
T Consensus 76 Gl~~~vp~~tV~~~CaSG~~Av~~A~~~I~sG~~divlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (400)
T PRK13359 76 GLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMSRAPFVMGKAESAFSRQAEIFDTTIGWRFVNPLMK 155 (400)
T ss_pred CCCCCCceEEEeccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCccccccccccccCCcccccccccccccCCccc
Confidence 995 4999999999999999999999999999999999999987642110 0
Q ss_pred H-HH--Hhhhh----h-----------------cc----------CCC---------C---------CCCCC--------
Q 008700 365 G-FV--ACRAL----S-----------------QR----------NND---------P---------TKASR-------- 384 (557)
Q Consensus 365 ~-~~--~~~~L----s-----------------~~----------~~~---------p---------~~~~r-------- 384 (557)
. +. .++.. . +. ..+ + |...|
T Consensus 156 ~~~~~~~mg~~ae~~a~~~gisre~~d~~a~~Sh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~De~~r~~t~e~l~ 235 (400)
T PRK13359 156 QLYGVDSMPETAENVATDYNVSRADQDAFALRSQQKAARAQADGTLAQEIVPVTIPQKKGDPLVVSRDEHPRETTLEALA 235 (400)
T ss_pred cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCccceeeeeeccCCCCceeecCCCCCCCCCHHHHh
Confidence 0 00 00000 0 00 000 0 00111
Q ss_pred ----CCcCC-----CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 008700 385 ----PWDIN-----RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSG 455 (557)
Q Consensus 385 ----pfd~~-----~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Ag 455 (557)
.|+.+ .|...++|||+++||++++.|+++|.+++++|.|++... ..|.+.+.+...+++++|+++|
T Consensus 236 ~l~p~f~~~g~lT~~n~~~~~DGAaa~vL~s~e~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~A~~~al~~AG 310 (400)
T PRK13359 236 KLKGVVRPDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAG-----VEPRVMGIGPAPATQKLLARLG 310 (400)
T ss_pred cCCCccCCCCceecccccCccCceEEEEEecHHHHHHCCCCccEEEEEEEEec-----CCCCccchhHHHHHHHHHHHhC
Confidence 12221 233447999999999999999999999999999998863 2344556677899999999999
Q ss_pred CCCCCccEEEEcCCCCccCcHHHHHHH--HHHhcCC-CCcccccCccc--ccchhhhHHHHHHHHHHHHHHc
Q 008700 456 VSREDVNYINAHATSTPAGDIKEYQAL--IHCFGQN-RGLRVNSTKSM--IGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 456 l~~~dId~ve~hgtgt~~~D~~E~~Al--~~~~~~~-~~~~v~s~K~~--iGH~~gAaG~~~li~~~~~l~~ 522 (557)
++++|||+||.| |..+.+.+ .+.|+-. ...+++..++. +||+.||+|+.+++.++.+|+.
T Consensus 311 l~~~DID~iei~-------dafa~~~l~~~e~lg~~~~~~pvN~~GG~la~GHp~gasG~~~v~e~~~qL~~ 375 (400)
T PRK13359 311 MTLDQFDVIELN-------EAFASQGLAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVTTALYQLER 375 (400)
T ss_pred CCHHHcCcCccC-------cHhHHHHHHHHHHcCCCCCCCCEECCCchhhcCCchhHHHHHHHHHHHHHHhh
Confidence 999999999966 55654444 3456631 23678888885 7999999999999999999985
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=210.47 Aligned_cols=245 Identities=18% Similarity=0.247 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+..... . ...++...+..+|
T Consensus 32 ~eL~~~a~~~aL~~Agi~~~dID-------~vi~G~~~~~~------------------------~-~~~~~~~~~l~ag 79 (397)
T PRK06954 32 PQLGAAAIAAAVERAGLKPEQID-------EVVMGCVLPAG------------------------Q-GQAPARQAALGAG 79 (397)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-------EEEEEecCCCc------------------------c-chHHHHHHHHcCC
Confidence 56899999999999999999888 68999753111 1 1123334444556
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh----------------HH---------HHHH
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------------LG---------GFVA 368 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~----------------~~---------~~~~ 368 (557)
+ +.|.++|+++|+||+.|+..|+++|++|++|++||+|+|.+..... .. .+..
T Consensus 80 ~~~~~p~~~V~~aCaSG~~Av~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
T PRK06954 80 LPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMTNAPYLLPKARGGMRMGHGQVLDHMFLDGLEDAYDK 159 (397)
T ss_pred CCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEeeeccCCCcccCcccccccccCcchhhhhhccccccccccc
Confidence 5 3588999999999999999999999999999999999998752110 00 0000
Q ss_pred ---h----hhhh-cc-------------------CCCCCCCC----CCC-------------------------------
Q 008700 369 ---C----RALS-QR-------------------NNDPTKAS----RPW------------------------------- 386 (557)
Q Consensus 369 ---~----~~Ls-~~-------------------~~~p~~~~----rpf------------------------------- 386 (557)
+ ..+. +. ...|.+.. .|+
T Consensus 160 ~~~~~~~a~~~~~~ygitre~~d~~A~~s~~~a~~a~~~~~~~~~~~pv~v~~~~~~~~v~~D~~pr~~~~~~l~~l~~~ 239 (397)
T PRK06954 160 GRLMGTFAEECAGEYGFTREAQDAFAIESLARAKRANEDGSFAWEIAPVTVAGKKGDTVIDRDEQPFKANPEKIPTLKPA 239 (397)
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEEeccCCCCeEeccCCCcCCCCHHHHhCCCCc
Confidence 0 0000 00 00011000 011
Q ss_pred -cC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 008700 387 -DI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 387 -d~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~d 460 (557)
+. ..|...++|||+++||++++.|++.|.+++++|.|++..... +.....+...+++++|+++|++++|
T Consensus 240 f~~~g~lt~~~~~~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~D 314 (397)
T PRK06954 240 FSKTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQA-----PSKFTTAPVGAIRKLFEKNGWRAAE 314 (397)
T ss_pred cCCCCcEEccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccC-----cccccchHHHHHHHHHHHcCCCHHH
Confidence 10 112345799999999999999999999999999987764321 1112235578999999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHHHHHHhc-CCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 461 VNYINAHATSTPAGDIKEYQALIHCFG-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~Al~~~~~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
||++|+|..++. .|+..++.. | ...++++++.+..+||+.||+|+.+++.++++|+.
T Consensus 315 id~~ei~d~fa~----~~l~~~e~l-g~~~~~vN~~GG~~a~Ghp~gasG~~~~~~~~~qL~~ 372 (397)
T PRK06954 315 VDLFEINEAFAV----VTMAAMKEH-GLPHEKVNVNGGACALGHPIGASGARILVTLIGALRA 372 (397)
T ss_pred CCEEehhhHHHH----HHHHHHHHh-CCCcccCCcCCChHHhcccHHHHHHHHHHHHHHHHHh
Confidence 999999987776 444444433 3 23468899999999999999999999999999985
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-22 Score=210.30 Aligned_cols=244 Identities=22% Similarity=0.282 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHH-HCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALe-dAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+.++++++|+ |+|+++++|| .|++|+.... +....+++..++..+
T Consensus 26 ~~L~~~a~~~al~~~a~i~~~~Id-------~v~~G~~~~~------------------------~~~~~~~ar~~~~~~ 74 (400)
T TIGR02430 26 DDLAAVPIKALLARNPQLDWAAID-------DVIYGCANQA------------------------GEDNRNVARMAALLA 74 (400)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC-------EEEEEecccc------------------------ccccccHHHHHHHHc
Confidence 5688999999999 6899998888 6999975310 111234566788999
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh--------H---------------------
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG--------L--------------------- 363 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~--------~--------------------- 363 (557)
|+. -|.++|+++|+||+.||..|+++|++|++|++||||+|.+..... +
T Consensus 75 Gl~~~~p~~~V~~~CaSG~~Ai~~a~~~I~sG~~d~~la~G~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (400)
T TIGR02430 75 GLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMSRAPFVMGKADSAFSRSAKIEDTTIGWRFINPLMK 154 (400)
T ss_pred CCCCCCceEEeechhhhHHHHHHHHHHHHHCCCCCEEEEeccccccCCcccccccccccccccccccccccccccCcccc
Confidence 995 599999999999999999999999999999999999998754210 0
Q ss_pred HHHH-------------Hhh-------hhh---------------------------ccC----CCCCCCCC--------
Q 008700 364 GGFV-------------ACR-------ALS---------------------------QRN----NDPTKASR-------- 384 (557)
Q Consensus 364 ~~~~-------------~~~-------~Ls---------------------------~~~----~~p~~~~r-------- 384 (557)
..|. ..+ .++ ..+ .+|+...|
T Consensus 155 ~~~~~~~M~~~ae~~a~~ygisre~~d~~A~~Sh~~a~~a~~~g~~~~ei~pv~vk~~~~~~~~~n~da~~r~~~t~e~l 234 (400)
T TIGR02430 155 ALYGVDSMPETAENVAEEFGISREDQDAFALRSQQRTAAAQASGFFAEEIVPVVIPQKKGEPTVVDQDEHPRPETTLEGL 234 (400)
T ss_pred cccccCcHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEeccCCCCceeeCCCCccCCCCCHHHH
Confidence 0000 000 000 000 12222222
Q ss_pred ----C-CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHc
Q 008700 385 ----P-WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHS 454 (557)
Q Consensus 385 ----p-fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~A 454 (557)
| |+. ..|...++|||+++||++++.|+++|.+++++|+|++.... .+.+.+.+...+++++|+++
T Consensus 235 ~~~~~v~~p~g~lt~~~~s~~~DGAaa~vl~s~e~A~~~g~~~~~~I~g~~~~~~-----~~~~~~~~~~~a~~~al~~A 309 (400)
T TIGR02430 235 AKLKPVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGV-----EPRIMGIGPVPATQKLLARA 309 (400)
T ss_pred hcCCCcccCCCCEeccccCCcCCceEEEEEecHHHHHHCCCCccEEEEEEEEecC-----CCccccchHHHHHHHHHHHh
Confidence 1 221 13445589999999999999999999999999999987653 22334456789999999999
Q ss_pred CCCCCCccEEEEcCCCCccCcHHHHHH--HHHHhcCC-CCcccccCccc--ccchhhhHHHHHHHHHHHHHHc
Q 008700 455 GVSREDVNYINAHATSTPAGDIKEYQA--LIHCFGQN-RGLRVNSTKSM--IGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 455 gl~~~dId~ve~hgtgt~~~D~~E~~A--l~~~~~~~-~~~~v~s~K~~--iGH~~gAaG~~~li~~~~~l~~ 522 (557)
|++++||||+|+| |..+.+. ..+.|+-. ...+++..++. +||+.||+|+.++++++.||+.
T Consensus 310 gl~~~DID~~ei~-------D~f~~~~l~~~e~lG~~~~~~pvN~~GG~la~GHp~gasG~~~~~e~~~qLr~ 375 (400)
T TIGR02430 310 GLSIDQFDVIELN-------EAFAAQALAVLRELGLADDDARVNPNGGAIALGHPLGASGARLVLTALRQLER 375 (400)
T ss_pred CCCHHHCCCcccC-------cHHHHHHHHHHHHcCCCCCCCeECCCCchHhccChHHHHHHHHHHHHHHHHHh
Confidence 9999999999966 5544443 34567632 23577888775 8999999999999999999985
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=208.63 Aligned_cols=244 Identities=22% Similarity=0.298 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHC-CCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALedA-Gl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+.+++++||+|+ |+++++|| .|++|+..... ......+..+...+
T Consensus 32 ~eLa~~A~~~AL~~a~gl~~~dID-------~vi~g~~~~~~------------------------~~~~~~ar~~~~~~ 80 (399)
T PRK09052 32 DDLLAHVLRSAVAQVPGLDPKLIE-------DAIVGCAMPEA------------------------EQGLNVARIGALLA 80 (399)
T ss_pred HHHHHHHHHHHHHhccCcCHHHCC-------EEEEEecCCCC------------------------CCCchHHHHHHHHc
Confidence 568999999999997 99999888 79999754210 01122333455666
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh----H--H--HHH---------Hhhhhhc-
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----L--G--GFV---------ACRALSQ- 374 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~----~--~--~~~---------~~~~Ls~- 374 (557)
|+. -|.++|+++|+|++.||+.|+++|++|++|++||+|+|.+..... + . .+. .++..++
T Consensus 81 Gl~~~~p~~~V~~aCaSg~~Al~~A~~~I~sG~~d~vLv~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 160 (399)
T PRK09052 81 GLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNKPSMSPAIFARDENVGIAYGMGLTAEK 160 (399)
T ss_pred CCCCCCceeeecchhhHHHHHHHHHHHHHHCCCCCEEEEEEEeccccCcccCcccccCcchhccCCcccccchHHHHHHH
Confidence 885 479999999999999999999999999999999999997643210 0 0 000 0000000
Q ss_pred ---------------------------cC------CCCCCC--C------------CC----------------------
Q 008700 375 ---------------------------RN------NDPTKA--S------------RP---------------------- 385 (557)
Q Consensus 375 ---------------------------~~------~~p~~~--~------------rp---------------------- 385 (557)
.. ..|... . .|
T Consensus 161 ~~~~ygitre~~d~~a~~sh~~a~~n~~ag~~~~ei~~~~v~~~~~~~~~~~~~~~~~~~~~D~~~r~~~~~e~l~~l~p 240 (399)
T PRK09052 161 VAEQWKVSREDQDAFALESHQKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKP 240 (399)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeEeccccccccccCcccccceEeccCCCCCCCCCHHHHhcCCC
Confidence 00 001100 0 00
Q ss_pred -CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 008700 386 -WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459 (557)
Q Consensus 386 -fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~ 459 (557)
|+. ..|...++|||+++||++++.|+++|.+++++|.|++.... .|.+.+.+...+++++|+++|++++
T Consensus 241 ~f~~~g~lt~~n~s~~~DGAaa~vl~se~~a~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~A~~~al~~Agi~~~ 315 (399)
T PRK09052 241 VFANKGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGV-----PPEIMGIGPIEAIPAALKQAGLKQD 315 (399)
T ss_pred ccCCCCcEECCccCCCCCceEEEEEecHHHHHHCCCCeeEEEEEEEEecc-----CCCccchhHHHHHHHHHHHcCCCHH
Confidence 110 11335689999999999999999999999999999998753 3334455778999999999999999
Q ss_pred CccEEEEcCCCCccCcHHHHHHH--HHHhcCCCCcccccCcc--cccchhhhHHHHHHHHHHHHHHcC
Q 008700 460 DVNYINAHATSTPAGDIKEYQAL--IHCFGQNRGLRVNSTKS--MIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 460 dId~ve~hgtgt~~~D~~E~~Al--~~~~~~~~~~~v~s~K~--~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|||++|+| |..+++.+ .+.|+-. ..+++..++ .+||+.||+|+++++.++++|+++
T Consensus 316 did~~ei~-------D~f~~~~l~~~e~lg~~-~~~vN~~GG~la~GHp~gasG~~~~~~~~~~L~~~ 375 (399)
T PRK09052 316 DLDWIELN-------EAFAAQSLAVIRDLGLD-PSKVNPLGGAIALGHPLGATGAIRTATVVHGLRRT 375 (399)
T ss_pred HcCEEEeC-------cHHHHHHHHHHHHhCCC-CcccCCCCchhhcCchHHHHHHHHHHHHHHHHHhc
Confidence 99999976 55444443 4556632 234555555 679999999999999999999874
|
|
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=212.16 Aligned_cols=247 Identities=21% Similarity=0.296 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.++.++||+|+|+++++|| .|++|+...+. .....++..++...|
T Consensus 27 ~eL~~~a~~~al~~agi~~~~Id-------~v~~G~~~~~~------------------------~~~~~~ar~~~~~~G 75 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPGDDIE-------DVILGCTNQAG------------------------EDSRNVARNALLLAG 75 (401)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccccc------------------------cccccHHHHHHHhcC
Confidence 56899999999999999998888 79999753111 011223556778888
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh---------------HHH-------------
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG---------------LGG------------- 365 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~---------------~~~------------- 365 (557)
+. -|.++|+++|+||+.|+..|+++|++|++|++||||+|.+..... +..
T Consensus 76 lp~~~p~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvlagG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (401)
T PRK08131 76 LPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSRAPFVMGKAESAFSRDAKVFDTTIGARFPNPKIVA 155 (401)
T ss_pred CCCCCceeeeechhhhHHHHHHHHHHHHHCCCCCEEEEEEecCCCCCcccccccccccccCcchhhhhhcccccCccccc
Confidence 85 599999999999999999999999999999999999998753210 000
Q ss_pred -HHH--hhhhh-----c----------------c-----CCCC--CCCCCCC-------------cC-------------
Q 008700 366 -FVA--CRALS-----Q----------------R-----NNDP--TKASRPW-------------DI------------- 388 (557)
Q Consensus 366 -~~~--~~~Ls-----~----------------~-----~~~p--~~~~rpf-------------d~------------- 388 (557)
|.. ++..+ + . ...+ .....|. +.
T Consensus 156 ~~a~~~mg~~ae~~~~~ygitre~~d~vA~~S~~~~~~a~~~~~~~~~i~pi~v~~~~~~~~~~v~~De~~r~~~~~e~L 235 (401)
T PRK08131 156 QYGNDSMPETGDNVAAEFGISREDADRFAAQSQAKYQAAKEEGFFADEITPIEVPQGRKLPPKLVAEDEHPRPSSTVEAL 235 (401)
T ss_pred ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCCCceeeEEeccccCCCceEEecCCCCCCCCCHHHH
Confidence 000 00000 0 0 0000 0000011 10
Q ss_pred -------C------CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcC
Q 008700 389 -------N------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSG 455 (557)
Q Consensus 389 -------~------~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Ag 455 (557)
+ .|...++|||+++||++++.|++.+.+++++|.|++...+. +...+.+...+++++|+++|
T Consensus 236 ~~l~p~f~~g~lt~~~~s~~~DGAaa~vl~s~~~a~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~a~~~ag 310 (401)
T PRK08131 236 TKLKPLFEGGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGVE-----PRIMGIGPVEAIKKALARAG 310 (401)
T ss_pred hcCCCCCCCCCccCCcCCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEeccC-----CccccchHHHHHHHHHHHcC
Confidence 0 15566899999999999999999999999999999987542 22334467899999999999
Q ss_pred CCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcc--cccchhhhHHHHHHHHHHHHHHcC
Q 008700 456 VSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKS--MIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 456 l~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~--~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
++++|||++|+|..++.. |+..+ +.+|-. ...+|+...+ .+|||.||+|+.++++++++|+..
T Consensus 311 l~~~did~~ei~d~Fa~~----~l~~~-e~lg~~~~~~~vN~~GG~la~GhP~gAtG~~~~~el~~qL~~~ 376 (401)
T PRK08131 311 LTLDDMDIIEINEAFASQ----VLGCL-KGLGVDFDDPRVNPNGGAIAVGHPLGASGARLALTAARELQRR 376 (401)
T ss_pred CCHHHCCeehhccHHHHH----HHHHH-HHcCCCCCCCCccCCccHHhcCCchhhhHHHHHHHHHHHHHhc
Confidence 999999999999776662 32222 233321 1244555555 579999999999999999999864
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-22 Score=208.93 Aligned_cols=248 Identities=19% Similarity=0.237 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+....... +. .......+...++
T Consensus 33 ~~L~~~a~~~AL~~agl~~~dID-------~vi~g~~~~~~~~--------------------~~--~~~~~~~l~a~~~ 83 (394)
T PRK06445 33 EELAAMLINRLIEKTGIKPEEID-------DIITGCALQVGEN--------------------WL--YGGRHPIFLARLP 83 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------eeEEEeecCCCcc--------------------cc--cHHHHHHHHcCCC
Confidence 56899999999999999999888 6899875421100 00 0001112222234
Q ss_pred CCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh-----------hHH---H---HH-----Hhhhhh
Q 008700 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI-----------GLG---G---FV-----ACRALS 373 (557)
Q Consensus 316 l~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~-----------~~~---~---~~-----~~~~Ls 373 (557)
.+-|.++|+++|+|++.||+.|+++|++|.+|++||+|+|.+.... .+. . +. .++..+
T Consensus 84 ~~~p~~~V~~~CaSg~~ai~~A~~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a 163 (394)
T PRK06445 84 YNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGGVEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLTA 163 (394)
T ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHcCCCCEEEEeeecccccCccccCccccCChhhccccccCcccccCCCCHHHHH
Confidence 4569999999999999999999999999999999999999654211 000 0 00 000000
Q ss_pred -------------------------ccC-----------------------CCCCCCCC------------C-Cc-----
Q 008700 374 -------------------------QRN-----------------------NDPTKASR------------P-WD----- 387 (557)
Q Consensus 374 -------------------------~~~-----------------------~~p~~~~r------------p-fd----- 387 (557)
... .+|+...| | |+
T Consensus 164 ~~~~~~ygitre~~a~va~~sh~~A~~a~~~g~~~~ei~p~~~~~~~~~~~~npda~~r~~~t~e~~~~~~~v~~~~g~l 243 (394)
T PRK06445 164 EKLAEEAGIKREEMDRWSLRSHQLAAKAIQEGYFKDEILPIEVEVEGKKKVVDVDQSVRPDTSLEKLAKLPPAFKPDGVI 243 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeEEEecCCCCceeeCCCCCCCCCCCHHHHhcCCCccCCCCcE
Confidence 000 02322222 1 11
Q ss_pred CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEc
Q 008700 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAH 467 (557)
Q Consensus 388 ~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~h 467 (557)
...|...++|||+++||++++.|++++.+++++|+|++...+. +.+.+.+...+++++|+++|++++||||+|+|
T Consensus 244 t~~~~~~~~DGAaavvl~s~~~A~~~~~~~~a~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~Agl~~~dId~~e~~ 318 (394)
T PRK06445 244 TAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGVP-----PAIMGKGPVPASKKALEKAGLSVKDIDLWEIN 318 (394)
T ss_pred ecCcCCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEEeccC-----CchhcchHHHHHHHHHHHcCCCHHHcCEEEec
Confidence 1123556799999999999999999999999999999987532 33344567889999999999999999999999
Q ss_pred CCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHH
Q 008700 468 ATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIR 521 (557)
Q Consensus 468 gtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~ 521 (557)
+.++. .|...++..--..+++++++....+||+.||+|+.++++++++|+
T Consensus 319 d~f~~----~~l~~~e~lg~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~ 368 (394)
T PRK06445 319 EAFAV----VVLYAIKELGLDPETVNIKGGAIAIGHPLGATGARIVGTLARQLQ 368 (394)
T ss_pred ccchH----HHHHHHHHhCCCccccCCCCCHHHcCCCccchHHHHHHHHHHHHH
Confidence 98777 455555544223346788888888999999999999999999997
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-22 Score=209.18 Aligned_cols=246 Identities=18% Similarity=0.267 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHC-CCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALedA-Gl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+.+++++||+|+ |+++++|| +|++|+.... .......+..++..+
T Consensus 28 ~eL~~~A~~~AL~da~gl~~~dID-------~vv~g~~~~~------------------------~~~g~~~~~~~a~~l 76 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDPTDID-------DLMLGCGLPG------------------------GEQGFNMARVVAVLL 76 (406)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC-------EEEEEccccc------------------------ccccCCHHHHHHHHc
Confidence 568999999999997 99999888 7888853210 000112456788999
Q ss_pred CCCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh-------------hHH----------------
Q 008700 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI-------------GLG---------------- 364 (557)
Q Consensus 315 gl~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~-------------~~~---------------- 364 (557)
|+.+ |.++|+++|+||+.||..|+++|++|++|++||+|+|.+.... .+.
T Consensus 77 Gl~~~p~~~v~~~caSG~~av~~Aa~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (406)
T PRK07851 77 GYDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVSRFAKGNSDSLPDTKNPLFAEAQARTAARAEGGAEA 156 (406)
T ss_pred CCCCCCeeeeeccchhHHHHHHHHHHHHHCCCCCEEEEeeEEecccCcccccccccccCchhhhhccccccccccccccc
Confidence 9975 9999999999999999999999999999999999998642110 000
Q ss_pred --H----------HHHhhh----------hh--------------------cc-CC---C----C-------CCCCC-CC
Q 008700 365 --G----------FVACRA----------LS--------------------QR-NN---D----P-------TKASR-PW 386 (557)
Q Consensus 365 --~----------~~~~~~----------Ls--------------------~~-~~---~----p-------~~~~r-pf 386 (557)
. +..++. ++ .. +. . | +...| ++
T Consensus 157 ~~~~~g~~~~~~~~~amg~~a~~~~~~yg~~re~~~~~a~~s~~~a~~A~~n~~~a~~~~p~~~p~~~~~~~d~~~r~~~ 236 (406)
T PRK07851 157 WHDPREDGLLPDVYIAMGQTAENVAQLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLPDGTVVSTDDGPRAGT 236 (406)
T ss_pred ccccccccccccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCCCCccceeeeecCCCceeCCCCCccCCc
Confidence 0 000000 00 00 00 0 1 10111 11
Q ss_pred c------------C-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHH
Q 008700 387 D------------I-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEK 449 (557)
Q Consensus 387 d------------~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~ 449 (557)
+ . ..|...++||++++||++++.|++.+.+++++|+|++...+. +.+...+...++++
T Consensus 237 t~e~v~~s~~v~~P~~~lt~~d~~~~~DGaaa~vl~s~e~A~~~~~~~~a~I~g~~~~~~~-----~~~~~~~~~~a~~~ 311 (406)
T PRK07851 237 TYEKVSQLKPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTGVSGLS-----PEIMGLGPVEASKQ 311 (406)
T ss_pred CHHHHhcCCCccCCCCcEecCcCCccCCceeEEEEccHHHHHHcCCCccEEEEEEEEccCC-----CCccchhHHHHHHH
Confidence 1 0 125556799999999999999999999999999999876432 22334457789999
Q ss_pred HHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 450 ALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 450 aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+|+++|++++|||++|+|...+. .|...+ +.|+- ..++++++.+..+||+.|++|+.+++.++++|++
T Consensus 312 al~~Agi~~~did~~ei~d~f~~----~~l~~l-e~lg~~~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL~~ 380 (406)
T PRK07851 312 ALARAGMSIDDIDLVEINEAFAA----QVLPSA-RELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNLQT 380 (406)
T ss_pred HHHHhCCCHHHCCeehhhhHHHH----HHHHHH-HHhCCCccccCCCCChHhhcCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999865554 222222 23442 2367889999999999999999999999999976
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=207.64 Aligned_cols=254 Identities=22% Similarity=0.282 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+|+|++++++| ++++|+..... .....+..++..+
T Consensus 16 ~~eL~~~A~~~Al~dagl~~~~Id-------~vi~g~~~~~~-------------------------~~~~~a~~va~~l 63 (375)
T cd00829 16 PLELAAEAARAALDDAGLEPADID-------AVVVGNAAGGR-------------------------FQSFPGALIAEYL 63 (375)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEecccccc-------------------------cccchHHHHHHHc
Confidence 467999999999999999998777 78888653110 0123567899999
Q ss_pred CC-CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh------------------HHHH---HHhhhh
Q 008700 315 GW-MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG------------------LGGF---VACRAL 372 (557)
Q Consensus 315 gl-~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~------------------~~~~---~~~~~L 372 (557)
|+ ..|.++|+.+|+|++.+|..|+++|++|++|++||+|+|.+..... +..+ ..++..
T Consensus 64 Gl~~~~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 143 (375)
T cd00829 64 GLLGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALA 143 (375)
T ss_pred CCCCcceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHHH
Confidence 99 4699999999999999999999999999999999999997643210 0000 000000
Q ss_pred h-----c----------------c--CCCCCCC----------------CCCCcCCCCCceecCceEEEEEcchHHHHhc
Q 008700 373 S-----Q----------------R--NNDPTKA----------------SRPWDINRDGFVMGEGAGVLLLEELEHAKKR 413 (557)
Q Consensus 373 s-----~----------------~--~~~p~~~----------------~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~ 413 (557)
. + . ..+|... +.|+. ..|...++||++++||++++.|++.
T Consensus 144 a~~~~~~~g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~-~~~~~~~~DGaaa~vl~s~~~a~~~ 222 (375)
T cd00829 144 ARRYMHRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLR-LLDCCPVSDGAAAVVLASEERAREL 222 (375)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCc-hhhcCCCCCceeEEEEecHHHHhhc
Confidence 0 0 0 0011110 11222 1356678999999999999999988
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCC--ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC--
Q 008700 414 GAKIYAEFRGGSFTSDAYHMTEPHP--DGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-- 489 (557)
Q Consensus 414 G~~i~a~I~G~~~~~d~~~~~~~~p--~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-- 489 (557)
.+++++|+|++..++..+...... ...+...+++++|+++|++++|||++|+|++++.. ....+++|.-+-...
T Consensus 223 -~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~did~~ei~d~F~~~-~l~~~e~lGl~~~g~~~ 300 (375)
T cd00829 223 -TDRPVWILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIA-ELLALEDLGFCEKGEGG 300 (375)
T ss_pred -CCCCeEEEEEEEecCCccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HHHHHHHcCCCCCCchH
Confidence 677899999999888776544332 56778899999999999999999999999999983 333333332110000
Q ss_pred -----------C--CcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 490 -----------R--GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 490 -----------~--~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
. +++++..--..||+.|++|+.+++++++||+..
T Consensus 301 ~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qlrg~ 347 (375)
T cd00829 301 KLVREGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGE 347 (375)
T ss_pred HHHHCCCccCCCCccccCCCchhcCCCCccHHHHHHHHHHHHHhcCC
Confidence 1 344444444469999999999999999999864
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=204.75 Aligned_cols=247 Identities=17% Similarity=0.165 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.++++++|+|+|+++++|| .|++|+.... +.....++..++...|
T Consensus 27 ~eL~~~a~~~aL~~agi~~~~Id-------~v~~G~~~~~------------------------~~q~~~~ar~~~l~~G 75 (387)
T PRK07850 27 AELLGAVQRAVLDRAGIDPGDVE-------QVIGGCVTQA------------------------GEQSNNITRTAWLHAG 75 (387)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecccc------------------------ccccchHHHHHHHhCC
Confidence 56889999999999999998888 6899975310 1101224556677788
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh-hH---------------HHHHHhhh----h-
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI-GL---------------GGFVACRA----L- 372 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~-~~---------------~~~~~~~~----L- 372 (557)
+. -|.++|+++|+||+.|+..|++.|++|++|++||+|+|+|.... .. ..+..+.. +
T Consensus 76 l~~~~p~~tV~~~CaSG~~A~~~A~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~m~~~ae~~~ 155 (387)
T PRK07850 76 LPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVPLGANAGPGRGLPRPDSWDIDMPNQFEAAERIA 155 (387)
T ss_pred CCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEEeEecCCCCcccccccccccCccccccccCcchHHHHHHHHH
Confidence 85 49999999999999999999999999999999999999875421 00 00000000 0
Q ss_pred ----------------hccCC-------------------------CCCCC---------------------CCCCcC--
Q 008700 373 ----------------SQRNN-------------------------DPTKA---------------------SRPWDI-- 388 (557)
Q Consensus 373 ----------------s~~~~-------------------------~p~~~---------------------~rpfd~-- 388 (557)
++.+. .|.+. ...|..
T Consensus 156 ~~ygisre~~d~~a~~sh~~a~~A~~~g~f~~ei~pv~~~~~~~~~np~~~~~~~~~D~~~r~~t~e~l~~l~p~~~~~~ 235 (387)
T PRK07850 156 KRRGITREDVDAFGLRSQRRAAQAWAEGRFDREISPVQAPVLDEEGQPTGETRLVTRDQGLRDTTMEGLAGLKPVLEGGI 235 (387)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeEeecccccccccCCCceEeecCCCcccCCHHHhccCCCCCCCCC
Confidence 00000 01111 112311
Q ss_pred --CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEE
Q 008700 389 --NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINA 466 (557)
Q Consensus 389 --~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~ 466 (557)
-.|...++|||+++||.+++.|++.+.++.++|.|++..... +.....+...+++++|+++|++++|||++|+
T Consensus 236 ~t~~~~~~~sDGAaa~vl~see~A~~l~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~did~~ei 310 (387)
T PRK07850 236 HTAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAE-----PYYHLDGPVQATAKVLEKAGMKIGDIDLVEI 310 (387)
T ss_pred ccchhcCCcCCceEEEEEecHHHHHHcCCCCcEEEEEEEEeccC-----chhhcchHHHHHHHHHHHcCCCHHHcCeeee
Confidence 125566889999999999999999998888999999865322 1222345678999999999999999999999
Q ss_pred cCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 467 HATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 467 hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|..++. .|...+ +.++- ..++++++..-.+||+.+|+|+..++++++||+.+
T Consensus 311 ~d~F~~----~~l~~~-e~lg~~~~pvN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~ 363 (387)
T PRK07850 311 NEAFAS----VVLSWA-QVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALHELERT 363 (387)
T ss_pred cccchH----HHHHHH-HHcCCCCCCcCCCCchhhcCCCcchhHHHHHHHHHHHHHhc
Confidence 988876 344333 33442 23677777777889999999999999999999753
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=206.52 Aligned_cols=245 Identities=19% Similarity=0.219 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+.... +. ...++..++..+|
T Consensus 27 ~eLa~~A~~~aL~~agl~~~dID-------~vi~g~~~~~------------------------~~-~~~~~~~~~~~~G 74 (393)
T PRK08235 27 TELGGIAIKEALERANVSAEDVE-------EVIMGTVLQG------------------------GQ-GQIPSRQAARAAG 74 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecccC------------------------CC-CCCHHHHHHHHcC
Confidence 56899999999999999999888 6899975310 00 1123445678889
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH---------------------HH-HH----
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL---------------------GG-FV---- 367 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~---------------------~~-~~---- 367 (557)
+. -|.++|+++|+||+.||+.|+++|++|++|++||+|+|.+...... .. ..
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLvvG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
T PRK08235 75 IPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAPYILPGARWGYRMGDNEVIDLMVADGLTCAFSG 154 (393)
T ss_pred CCCCcceeehhhhhhHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccccccccCCchhhhhhcccccccccCC
Confidence 84 5999999999999999999999999999999999999987542100 00 00
Q ss_pred -Hhhhhhc-------------------------cC------------------------CCCCCCCCC------------
Q 008700 368 -ACRALSQ-------------------------RN------------------------NDPTKASRP------------ 385 (557)
Q Consensus 368 -~~~~Ls~-------------------------~~------------------------~~p~~~~rp------------ 385 (557)
.++..++ .+ -+|+...|+
T Consensus 155 ~~~~~~A~~~~~~ygitre~~d~~avksh~~a~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~ 234 (393)
T PRK08235 155 VHMGVYGGEVAKELGISREAQDEWAYRSHQRAVSAHEEGRFEEEIVPVTIPQRKGDPIVVAKDEAPRKDTTIEKLAKLKP 234 (393)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCCCceEeeeEecCCCCCceEeCCCCCCCCCCCHHHHhcCCC
Confidence 0000000 00 013332221
Q ss_pred -CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 008700 386 -WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459 (557)
Q Consensus 386 -fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~ 459 (557)
|+. ..|...++|||+++||++++.|++.+.+++++|.|++...+.... .......+++++|+++|++++
T Consensus 235 v~~p~g~lt~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~~i~g~~~~~~~~~~-----~~~~~~~a~~~al~~agl~~~ 309 (393)
T PRK08235 235 VFDKTGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEAKD-----FPRTPGYAINALLEKTGKTVE 309 (393)
T ss_pred cccCCCcEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEEEecccChhh-----hcchHHHHHHHHHHHhCCCHH
Confidence 111 124455799999999999999999999999999998765432111 122345899999999999999
Q ss_pred CccEEEEcCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 460 DVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 460 dId~ve~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
|||++|+|..++. .|... .+.|+- ..++++++.+..+||+.||+|+.++++++++|+.
T Consensus 310 did~~e~~d~f~~----~~l~~-~e~lg~~~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL~~ 368 (393)
T PRK08235 310 DIDLFEINEAFAA----VALAS-TEIAGIDPEKVNVNGGAVALGHPIGASGARIIVTLIHELKR 368 (393)
T ss_pred HCCeehhcchhHH----HHHHH-HHHhCCCcccCCcCCchHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9999998865554 22222 334552 3468889999999999999999999999999985
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=207.25 Aligned_cols=246 Identities=20% Similarity=0.303 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+..... ....++..++..+|
T Consensus 27 ~eLa~~A~~~AL~~agl~~~dID-------~vv~g~~~~~~-------------------------~~~~~a~~va~~~G 74 (404)
T PRK06205 27 EELAATVIRALVERTGIDPARID-------DVIFGQGYPNG-------------------------EAPAIGRVAALDAG 74 (404)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccCCC-------------------------CCChHHHHHHHHcC
Confidence 56899999999999999999888 78999753211 11234557888889
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh----------------hHHH------------
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI----------------GLGG------------ 365 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~----------------~~~~------------ 365 (557)
+. -|.++|+++|+|++.||+.|+++|++|.+|++||+|+|.+.... .+..
T Consensus 75 l~~~~p~~~V~~~CaSg~~Al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (404)
T PRK06205 75 LPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSNVEFYTTDMRWGVRGGGVQLHDRLARGRETAGGRR 154 (404)
T ss_pred CCCCCceeehhhhhhHHHHHHHHHHHHHHcCCCCEEEEeeehhhccCcccccccccccccCcchhhhhhccCcccccccc
Confidence 85 48999999999999999999999999999999999999764210 0000
Q ss_pred HH---Hhh----hhh-----------------c----c--------------------CC----CCCCCCC---------
Q 008700 366 FV---ACR----ALS-----------------Q----R--------------------NN----DPTKASR--------- 384 (557)
Q Consensus 366 ~~---~~~----~Ls-----------------~----~--------------------~~----~p~~~~r--------- 384 (557)
+. .++ .+. + . .+ +|+...|
T Consensus 155 ~~~~~~m~~~a~~~~~~~gitre~~~~~Av~sh~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~ 234 (404)
T PRK06205 155 FPVPGGMIETAENLRREYGISREEQDALAVRSHQRAVAAQEAGRFDDEIVPVTVPQRKGDPTVVDRDEHPRADTTLESLA 234 (404)
T ss_pred cCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeEecCCCCCceEeccCCCCCCCCCHHHHh
Confidence 00 000 000 0 0 00 1222221
Q ss_pred ---C-C---c-----CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHH
Q 008700 385 ---P-W---D-----INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALA 452 (557)
Q Consensus 385 ---p-f---d-----~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~ 452 (557)
| | + .-.|...++|||+++||++++.|++.+.+++++|.|++...+.. ...+.+...+++++|+
T Consensus 235 ~~~~v~~~~~p~g~lt~~~~~~~~DGAaa~vl~se~~A~~~~~~p~~~i~g~~~~~~~~-----~~~~~~~~~a~~~al~ 309 (404)
T PRK06205 235 KLRPIMGKQDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGVEP-----SRMGIGPVPATEKALA 309 (404)
T ss_pred cCCCcCccCCCCCceeCcccCCCCCceeEEEEecHHHHHHCCCCceEEEEEEEEeccCC-----ccccccHHHHHHHHHH
Confidence 1 2 1 12344557899999999999999999999999999999875432 2223356789999999
Q ss_pred HcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhc--CC--CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 453 HSGVSREDVNYINAHATSTPAGDIKEYQALIHCFG--QN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 453 ~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~--~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
++|++++|||++|+|..++. .|...+ +.|+ .. .++++++.+..+||+.||+|+..+++++++|+..
T Consensus 310 ~Agl~~~Did~~ei~d~f~~----~~l~~~-e~lg~~~~~~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~ 379 (404)
T PRK06205 310 RAGLTLDDIDLIELNEAFAA----QVLAVL-KEWGFGADDEERLNVNGSGISLGHPVGATGGRILATLLRELQRR 379 (404)
T ss_pred HcCCCHHHCCEeeeccHHHH----HHHHHH-HHhCcCcccCCCcCCCCCHHhhCCChhhhHHHHHHHHHHHHHhc
Confidence 99999999999998866554 222222 2333 11 2578888888999999999999999999999863
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=205.10 Aligned_cols=245 Identities=23% Similarity=0.284 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHH-HCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALe-dAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+.++++++|+ |+|+++++|| .|++|+.... +....+++..++...
T Consensus 27 ~~L~~~a~~~al~~~agi~~~~Id-------~v~~G~~~~~------------------------~~~~~~~ar~~~~~~ 75 (401)
T PRK09050 27 DDLGAVPLKALMARNPGVDWEAVD-------DVIYGCANQA------------------------GEDNRNVARMSALLA 75 (401)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCC-------EEEEEecccc------------------------ccccchHHHHHHHHc
Confidence 5688999999999 6899998888 6999975310 111234566788999
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh--------HH--------------------
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG--------LG-------------------- 364 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~--------~~-------------------- 364 (557)
|+. -|.++|+++|+||+.|+..|+++|++|++|++||+|+|++..... +.
T Consensus 76 Gl~~~vP~~tV~~aCaSG~~Ai~~A~~~I~sG~~dvvlagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (401)
T PRK09050 76 GLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQAEIFDTTIGWRFVNPLMK 155 (401)
T ss_pred CCCCCCceEEEecccccHHHHHHHHHHHHHCCCCCEEEEecccccccCcccccchhhhcccCcccccccccccccCCccc
Confidence 993 599999999999999999999999999999999999998754210 00
Q ss_pred H-HH--Hhhhh---------------------hc-------cCC---------------------CCCCCCC--------
Q 008700 365 G-FV--ACRAL---------------------SQ-------RNN---------------------DPTKASR-------- 384 (557)
Q Consensus 365 ~-~~--~~~~L---------------------s~-------~~~---------------------~p~~~~r-------- 384 (557)
. |. .++.. |. .+. +|+...|
T Consensus 156 ~~~~~~~Mg~~ae~~a~~~gisre~~D~~A~~S~k~a~~A~~ng~~~~ei~p~~~~~~~~~~~~~~~da~~r~~~t~e~l 235 (401)
T PRK09050 156 AQYGVDSMPETAENVAEDYNISRADQDAFALRSQQRAAAAQAAGFLAEEIVPVTIPQKKGDPVVVDRDEHPRPETTLEAL 235 (401)
T ss_pred cccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceeeeeeeccCCCCceeeCCCCCCCCCCCHHHH
Confidence 0 00 00000 00 010 1222222
Q ss_pred ----C-CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHc
Q 008700 385 ----P-WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHS 454 (557)
Q Consensus 385 ----p-fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~A 454 (557)
| |+. -.|...++|||+++||++++.|++.|.+++++|+|++..... +...+.+...+++++|+++
T Consensus 236 ~~l~~~~~~~g~lt~~n~s~~~DGAaa~vl~s~~~A~~lg~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~A 310 (401)
T PRK09050 236 AKLKPVFRPDGTVTAGNASGVNDGAAALLLASEAAAKKHGLTPRARILGMATAGVE-----PRIMGIGPAPATRKLLARL 310 (401)
T ss_pred hcCCCcccCCCEEeCCCcCCCcCceEEEEEecHHHHHHCCCCccEEEEEEEEeccC-----CccccchHHHHHHHHHHHc
Confidence 1 221 124455799999999999999999999999999999887532 2223445678999999999
Q ss_pred CCCCCCccEEEEcCCCCccCcHHHHHHH--HHHhcCC-CCcccccCccc--ccchhhhHHHHHHHHHHHHHHcC
Q 008700 455 GVSREDVNYINAHATSTPAGDIKEYQAL--IHCFGQN-RGLRVNSTKSM--IGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 455 gl~~~dId~ve~hgtgt~~~D~~E~~Al--~~~~~~~-~~~~v~s~K~~--iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|++++|||++|.| |..+...+ .+.|+-. ...+++..++. +||+.||+|+.++++++.||+..
T Consensus 311 gl~~~DId~~ei~-------D~f~~~~l~~~e~lg~~~~~~pvN~~GG~la~Ghp~gasG~~~~~e~~~qLr~~ 377 (401)
T PRK09050 311 GLTIDQFDVIELN-------EAFAAQGLAVLRQLGLADDDARVNPNGGAIALGHPLGMSGARLVLTALHQLERT 377 (401)
T ss_pred CCCHHHCCccccC-------cHhHHHHHHHHHHcCCCCCCCCEeCCCchHhcCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999976 55555444 3445531 23577777776 79999999999999999999863
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=203.53 Aligned_cols=246 Identities=21% Similarity=0.273 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+.... + .....+..++..+|
T Consensus 26 ~~L~~~a~~~al~dAgl~~~~ID-------~vv~g~~~~~------------------------~-~~~~~~~~~~~~~G 73 (394)
T PLN02644 26 TELGSIAIQAALERAGVDPALVQ-------EVFFGNVLSA------------------------N-LGQAPARQAALGAG 73 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCcC------------------------C-cCCcHHHHHHHhcC
Confidence 56899999999999999998888 7888864210 0 01113455778889
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh----------------h---H--H--------
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI----------------G---L--G-------- 364 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~----------------~---~--~-------- 364 (557)
+. -|.++|+++|+|++.||..|+++|++|++|++||+|+|.+.... . + .
T Consensus 74 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vlv~G~E~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (394)
T PLN02644 74 LPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGMESMSNAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVYND 153 (394)
T ss_pred CCCCCceEEEeccchHHHHHHHHHHHHHHcCCCCEEEEEeEEecCCCcccccccccccccccchhhhhccccccccccCC
Confidence 85 38899999999999999999999999999999999998763210 0 0 0
Q ss_pred -HH--HHhhhhh--------------------ccCCCCCCC-------------CCC-----------------------
Q 008700 365 -GF--VACRALS--------------------QRNNDPTKA-------------SRP----------------------- 385 (557)
Q Consensus 365 -~~--~~~~~Ls--------------------~~~~~p~~~-------------~rp----------------------- 385 (557)
.+ .....+. ..+..|... ..|
T Consensus 154 ~~~~~~A~~~~~~yG~tre~la~vav~s~~~a~~a~~~~~~~~ei~~~~v~~~~~~~~~~~~~de~~~~~~~~~l~~l~p 233 (394)
T PLN02644 154 FGMGVCAELCADQYSISREEQDAYAIQSYERAIAAQEAGAFAWEIVPVEVPGGRGRPSVIVDKDEGLGKFDPAKLRKLRP 233 (394)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCCccceeeEEeccCCCCCceEeecCCCcCCCCHHHHhCCCC
Confidence 00 0000000 000000000 000
Q ss_pred -Cc------CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 008700 386 -WD------INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 458 (557)
Q Consensus 386 -fd------~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~ 458 (557)
|. ...|...++||++++||++++.|++++.+++++|+|++...+.... .......+++++|+++|+++
T Consensus 234 ~f~~~~g~vt~~~~~~~~DGaaavvl~s~~~A~~~~~~~~a~I~g~~~~~~~~~~-----~~~~~~~a~~~al~~Agi~~ 308 (394)
T PLN02644 234 SFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAPEL-----FTTAPALAIPKALKHAGLEA 308 (394)
T ss_pred cccCCCCcEeccccCCCCcceEEEEeccHHHHHHCCCCeEEEEEEEEEcCCCCcc-----cchhHHHHHHHHHHHcCCCH
Confidence 11 0124566799999999999999999999999999999987653211 12233579999999999999
Q ss_pred CCccEEEEcCCCCccCcHHHHHHHHHHhcC-CCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 459 ~dId~ve~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+|||++|+|+.++. . .....+.||- ..++++++.+..+||+.||+|+.++++++++|+..
T Consensus 309 ~Did~~Ei~d~f~~----~-~l~~~e~lg~~~~~vN~~GG~l~~Ghp~gasG~~~~~~~~~~l~~~ 369 (394)
T PLN02644 309 SQVDYYEINEAFSV----V-ALANQKLLGLDPEKVNVHGGAVSLGHPIGCSGARILVTLLGVLRSK 369 (394)
T ss_pred HHCCEEEeCcHHHH----H-HHHHHHHhCCCccccCCCCChHhhCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998855433 1 1222345552 24678888888999999999999999999999863
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=202.23 Aligned_cols=246 Identities=20% Similarity=0.226 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHH-CCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALAD-GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALed-AGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+.++++++|++ +|+++++|| .|++|+.... +.....++..++...
T Consensus 26 ~~L~~~a~~~al~~~agl~~~~Id-------~v~~G~~~~~------------------------~~~g~~~ar~~~~~~ 74 (385)
T TIGR02445 26 EDLSAHLMSKLLARNPKVDPAEVE-------DIYWGCVQQT------------------------LEQGFNIARNAALLA 74 (385)
T ss_pred HHHHHHHHHHHHHhccCCCHHHcC-------EEEEeccccc------------------------ccccchHHHHHHHHC
Confidence 57899999999995 699999888 6999975310 000112455566666
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-------------------HHHHHHhhhh-
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-------------------LGGFVACRAL- 372 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-------------------~~~~~~~~~L- 372 (557)
|+. -|.++|+++|+||+.||+.|+++|++|++|++||||+|.+..... .+++...+..
T Consensus 75 g~~~~~p~~tV~~~CaSG~~Ai~~Aa~~I~sG~~d~vlagG~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 154 (385)
T TIGR02445 75 QIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMGHVPMMHGVDFHPGMSLHVAKAAGMMGLTAEMLGK 154 (385)
T ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHCCCCCEEEEeeehhcccCccccCCCcchhHHhhhccccchHHHHHHHHHH
Confidence 764 478999999999999999999999999999999999998753210 0000000000
Q ss_pred ---------------hc----c--------C----------------CCCCCCCCC-------------CcC------CC
Q 008700 373 ---------------SQ----R--------N----------------NDPTKASRP-------------WDI------NR 390 (557)
Q Consensus 373 ---------------s~----~--------~----------------~~p~~~~rp-------------fd~------~~ 390 (557)
++ . + .+|+...|+ |+. ..
T Consensus 155 ~ygitre~~d~~A~~sh~~a~~a~~~g~f~nei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~ 234 (385)
T TIGR02445 155 MHGISREQQDAFAARSHARAHAATQEGKFKNEIIPTQGHDADGFLKQFDYDEVIRPETTVESLAALRPAFDPKNGTVTAG 234 (385)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeeeeccCCCCceeeCCCCCCCCCCCHHHHhcCCceecCCCCceecc
Confidence 00 0 0 013333321 221 13
Q ss_pred CCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 008700 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATS 470 (557)
Q Consensus 391 dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtg 470 (557)
|...++||++++||++++.|++++.+++++|+|++.+.... ...+.+...+++++|+++|++|+||||+|+|..+
T Consensus 235 ~~~~~sDGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~~-----~~~~~~~~~a~~~al~~AGi~p~DId~~Ei~daF 309 (385)
T TIGR02445 235 TSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGCDP-----SIMGYGPVPATQKALKRAGLSISDIDVFELNEAF 309 (385)
T ss_pred cCCCcCCceEEEEEecHHHHHHCCCCeeEEEEEEEEcCCCC-----cccchhHHHHHHHHHHHcCCCHHHcCEEEEcccc
Confidence 55568999999999999999999999999999999874321 1222355789999999999999999999999887
Q ss_pred CccCcHHHHHHHHHHhc--CC--CCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 471 TPAGDIKEYQALIHCFG--QN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 471 t~~~D~~E~~Al~~~~~--~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+. .|+..++. +| .. .++++++..-.+|||.||+|+..++.+++.|++
T Consensus 310 a~----~~l~~~e~-lg~~~~g~~~vN~~GG~la~GhP~GATG~r~v~~l~~~l~~ 360 (385)
T TIGR02445 310 AA----QALPCLKD-LGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEQ 360 (385)
T ss_pred HH----HHHHHHHH-cCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh
Confidence 77 34444443 23 21 356777777778999999999999999977754
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=201.95 Aligned_cols=246 Identities=20% Similarity=0.239 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHH-HCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALA-DGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALe-dAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+.++++++|+ |+|+++++|| .|++|+.... +.....++..++...
T Consensus 28 ~~L~~~~~~~al~~~agl~~~~Id-------~vi~g~~~~~------------------------~~~g~~~ar~~~~~~ 76 (387)
T PRK08947 28 EDLSAHLMRSLLARNPALDPAEID-------DIIWGCVQQT------------------------LEQGFNIARNAALLA 76 (387)
T ss_pred HHHHHHHHHHHHHhccCcChHHhC-------eEEEEecccc------------------------ccccccHHHHHHHHc
Confidence 6688899999999 4899998888 6899864210 010122355678888
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-------------------HHHHHHhhhhh
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-------------------LGGFVACRALS 373 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-------------------~~~~~~~~~Ls 373 (557)
|+. -|.++|+++|+||+.|+..|+++|++|++|++||||+|.+..... .+++...+...
T Consensus 77 Gl~~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~d~vlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 156 (387)
T PRK08947 77 GIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMGHVPMNHGVDFHPGLSKNVAKAAGMMGLTAEMLGK 156 (387)
T ss_pred CCCCCCcceeeechhHHHHHHHHHHHHHHHCCCCCEEEEccccccccCccccccCcchhhhhhccccchHHHHHHHHHHH
Confidence 885 488999999999999999999999999999999999998753210 00000000000
Q ss_pred --------------------ccC------------------------CCCCCCCC------------C-CcC------CC
Q 008700 374 --------------------QRN------------------------NDPTKASR------------P-WDI------NR 390 (557)
Q Consensus 374 --------------------~~~------------------------~~p~~~~r------------p-fd~------~~ 390 (557)
..+ .+|+...| | |+. ..
T Consensus 157 ~ygisre~~~~~avksh~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~~da~~r~~~t~e~~~~~~~v~~p~~g~lt~~ 236 (387)
T PRK08947 157 MHGISREQQDAFAARSHQRAWAATQEGRFKNEIIPTEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVTAG 236 (387)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHcCCCcceEeeeeecCCCCCceeecCCCCCcCCCCHHHHhcCCceeeCCCCcEEcc
Confidence 000 01222221 1 121 23
Q ss_pred CCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 008700 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATS 470 (557)
Q Consensus 391 dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtg 470 (557)
|...++|||+++||++++.|++.+.+++++|+|++.+....+ ....+...+++++|+++|++++|||++|+|..+
T Consensus 237 ~~~~~sDGAaAvvl~s~~~A~~~g~~p~~~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~Agl~~~DId~~El~d~F 311 (387)
T PRK08947 237 TSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGCDPS-----IMGYGPVPATQKALKRAGLSISDIDVFELNEAF 311 (387)
T ss_pred ccCCcCCceEEEEEccHHHHHHCCCCccEEEEEEEEcCcCcc-----cccccHHHHHHHHHHHcCCCHHHCCEEEecccc
Confidence 456689999999999999999999999999999998743221 112235688999999999999999999999888
Q ss_pred CccCcHHHHHHHHHHhc--CC--CCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 471 TPAGDIKEYQALIHCFG--QN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 471 t~~~D~~E~~Al~~~~~--~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+. .|+..++. +| .. .++++++..-.+|||.||+|+.+++.++++|+.
T Consensus 312 ~~----~~l~~~e~-lg~~~~~~~~vN~~GG~la~GhP~GAtG~~~v~~l~~~L~~ 362 (387)
T PRK08947 312 AA----QSLPCLKD-LGLLDKMDEKVNLNGGAIALGHPLGCSGARISTTLLNLMER 362 (387)
T ss_pred hH----HHHHHHHH-cCCCCCCCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh
Confidence 77 44444443 23 22 367777777778999999999999999999976
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=205.22 Aligned_cols=245 Identities=17% Similarity=0.215 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+.... + ....++..++..+|
T Consensus 27 ~~L~~~a~~~al~dagi~~~dID-------~vi~g~~~~~------------------------~-~~~~~a~~~~~~~G 74 (388)
T PRK06366 27 PQLGGAAIKAVIDDAKLDPALVQ-------EVIMGNVIQA------------------------G-VGQNPAGQAAYHAG 74 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCCC------------------------C-ccCcHHHHHHHHCC
Confidence 56899999999999999999888 7899865311 0 11123566888899
Q ss_pred CCC--CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh---------h---H-------H-HHH------
Q 008700 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI---------G---L-------G-GFV------ 367 (557)
Q Consensus 316 l~G--p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~---------~---~-------~-~~~------ 367 (557)
+.. |.++|+++|+||+.||..|+++|++|++|++||+|+|.+.... . . . .+.
T Consensus 75 l~~~~p~~~v~~~caSg~~av~~Aa~~I~sG~~d~vla~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 154 (388)
T PRK06366 75 LPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSNAPFLLPSDLRWGPKHLLHKNYKIDDAMLVDGLID 154 (388)
T ss_pred CCCCCcceeeechhhHHHHHHHHHHHHHhcCCCCEEEEEeeEccccCcccccccccccccccccccchhhhhhcccCccc
Confidence 964 9999999999999999999999999999999999999864210 0 0 0 000
Q ss_pred -----Hhhhhhc-----c------------------CCCCCC-CC----------------C-----------C-CcC--
Q 008700 368 -----ACRALSQ-----R------------------NNDPTK-AS----------------R-----------P-WDI-- 388 (557)
Q Consensus 368 -----~~~~Ls~-----~------------------~~~p~~-~~----------------r-----------p-fd~-- 388 (557)
.++..++ . ...|.. .. | | |+.
T Consensus 155 ~~~~~~mal~A~~~~~~yGitrE~~a~vAv~s~~~A~~np~ag~~~~ei~p~~~~~~d~~~r~~t~e~~~~s~~v~~p~g 234 (388)
T PRK06366 155 AFYFEHMGVSAERTARKYGITREMADEYSVQSYERAIRATESGEFRNEIVPFNDLDRDEGIRKTTMEDLAKLPPAFDKNG 234 (388)
T ss_pred cccCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhHhcCCcccccccccccccccCcccCCHHHHhhCCCccCCCC
Confidence 0011100 0 001111 11 1 1 111
Q ss_pred ---CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 008700 389 ---NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYIN 465 (557)
Q Consensus 389 ---~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve 465 (557)
-.|...++|||+++||.+++.|++.+.++.++|+|++........ .......+++++|+++|++++|||++|
T Consensus 235 ~lt~~d~s~~sDGAaAvvl~See~A~~l~~~pv~~I~g~~~~~~~~~~-----~~~~~~~A~~~al~~Agl~~~DiDv~E 309 (388)
T PRK06366 235 ILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASLDPLD-----FVEAPIPATRKLLEKQNKSIDYYDLVE 309 (388)
T ss_pred CEehhhcCCcccceeEEEEecHHHHHHcCCCcCEEEEEEEEEecCHHH-----hcccHHHHHHHHHHHcCCCHHHcceee
Confidence 123445799999999999999999998888899999887542211 112236899999999999999999999
Q ss_pred EcCCCCccCcHHHHHHHHHH-hcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 466 AHATSTPAGDIKEYQALIHC-FGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 466 ~hgtgt~~~D~~E~~Al~~~-~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+|..++. .|+..++.. +... ++++++.--.+|||.||+|+.++++++.+|+.
T Consensus 310 i~daFa~----~~l~~le~lgl~g~-~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~ 362 (388)
T PRK06366 310 HNEAFSI----ASIIVRDQLKIDNE-RFNVNGGAVAIGHPIGNSGSRIIVTLINALKT 362 (388)
T ss_pred ccchhHH----HHHHHHHHhCCCCC-ccCCCCchhhhCCCcCCCHHHHHHHHHHHHHh
Confidence 9998887 444444433 2223 56666666668999999999999999999985
|
|
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=201.55 Aligned_cols=254 Identities=22% Similarity=0.346 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+...+... . . .. .+..+...++
T Consensus 23 ~eL~~eA~~~AL~dAgl~~~dId-------~vi~g~~~~~~~~----------------~----~-~~--~~~~~~~~~g 72 (389)
T PRK07516 23 ESLIVRVAREALAHAGIAAGDVD-------GIFLGHFNAGFSP----------------Q----D-FP--ASLVLQADPA 72 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEEecCCccc----------------c----c-cc--hhHHHHHhcC
Confidence 56899999999999999998887 7898875322100 0 0 00 1112233446
Q ss_pred CC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-H-H-----------------HHH-Hhhhhhc
Q 008700 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-L-G-----------------GFV-ACRALSQ 374 (557)
Q Consensus 316 l~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-~-~-----------------~~~-~~~~Ls~ 374 (557)
++ .|.++|+++|+|++.||+.|+++|++|++|.+||+|+|.+..... . . .+. .++..++
T Consensus 73 l~~~p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~ 152 (389)
T PRK07516 73 LRFKPATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRIAQ 152 (389)
T ss_pred CCCCceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHHHH
Confidence 64 489999999999999999999999999999999999998643210 0 0 000 0000000
Q ss_pred ---------------------c--CCCCCCC--------------------CCCCcCCCCCceecCceEEEEEcchHHHH
Q 008700 375 ---------------------R--NNDPTKA--------------------SRPWDINRDGFVMGEGAGVLLLEELEHAK 411 (557)
Q Consensus 375 ---------------------~--~~~p~~~--------------------~rpfd~~~dG~v~gEGAaalvLe~~~~A~ 411 (557)
. ..+|... ..|+. ..|...++|||+++||++++.|+
T Consensus 153 ~y~~~yg~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~-~~d~~~~~DGAaa~il~s~~~a~ 231 (389)
T PRK07516 153 AYFQRYGDQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLR-RTDCSLVSDGAAALVLADAETAR 231 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCc-hhhcCCcCcceEEEEEecHHHHH
Confidence 0 0012110 01111 24666789999999999999998
Q ss_pred hcCCeeeEEEEEEEEecCCCCCCCCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHH-----
Q 008700 412 KRGAKIYAEFRGGSFTSDAYHMTEPHP-DGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHC----- 485 (557)
Q Consensus 412 ~~G~~i~a~I~G~~~~~d~~~~~~~~p-~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~----- 485 (557)
+.+. +++|+|++..++..+....++ ...+...+++++|+++|++|+|||++|+|++++.. ...+.++|.-+
T Consensus 232 ~~~~--~v~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~agl~~~did~~e~~d~f~~~-~~~~~e~lg~~~~G~~ 308 (389)
T PRK07516 232 ALQR--AVRFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALAQAGVTLDDLSFVETHDCFTIA-ELIEYEAMGLAPPGQG 308 (389)
T ss_pred hcCC--CEEEEEEEeccCcccccCCCccccHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCHH-HHHHHHHcCCCCCCch
Confidence 8753 578999998877665433332 34677789999999999999999999999999984 44444444211
Q ss_pred ---hc-------CCCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 486 ---FG-------QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 486 ---~~-------~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+. ...+++.++.--.+||+.||+|+.+++++++||+..
T Consensus 309 ~~~~~~g~~~~~g~~pvN~sGG~la~Ghp~gasG~~~~~e~~~QL~g~ 356 (389)
T PRK07516 309 ARAIREGWTAKDGKLPVNPSGGLKAKGHPIGATGVSMHVLAAMQLTGE 356 (389)
T ss_pred HHHHHCCCccCCCCeeecCCCCcccCCCCccHHHHHHHHHHHHHhcCC
Confidence 11 011333333333579999999999999999999975
|
|
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=198.58 Aligned_cols=251 Identities=18% Similarity=0.236 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHCCCChhh--hhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHH--
Q 008700 236 MLYLLTAGKKALADGGITEDV--MNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA-- 311 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~--i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia-- 311 (557)
..|+.+++++||+|+|+++++ || +|++|+..+... .. ...++..++
T Consensus 49 ~eL~~~a~~~al~~agl~~~d~~ID-------~vi~G~~~~~~~---------------------~~--~~~~a~~~~~~ 98 (438)
T PTZ00455 49 EELLATAIQGTLENTGLDGKAALVD-------KVVVGNFLGELF---------------------SS--QGHLGPAAVGS 98 (438)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCcC-------EEEEEecccccc---------------------cc--ccchHHHHHHh
Confidence 568999999999999999987 87 788887532110 00 111233334
Q ss_pred -----HhhCCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh-----h-------H----------
Q 008700 312 -----MDLGWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI-----G-------L---------- 363 (557)
Q Consensus 312 -----~~lgl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~-----~-------~---------- 363 (557)
..+|+. -|.++|+++|+||+.||..|+++|++|++|++||+|+|.+.... . +
T Consensus 99 ~gl~~~~~gl~~~p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (438)
T PTZ00455 99 LGQSGASNALLYKPAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQRKLDDFT 178 (438)
T ss_pred ccCcccccccCCCceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcchhhhhhccchhhccccccccCcc
Confidence 344554 49999999999999999999999999999999999999764311 0 0
Q ss_pred -HH-HH-HhhhhhccC-------------------CCCCCC--CCCCc------------------------CCCCCcee
Q 008700 364 -GG-FV-ACRALSQRN-------------------NDPTKA--SRPWD------------------------INRDGFVM 395 (557)
Q Consensus 364 -~~-~~-~~~~Ls~~~-------------------~~p~~~--~rpfd------------------------~~~dG~v~ 395 (557)
.. |. .++.+.+.+ .+|... .++.+ .-.|...+
T Consensus 179 ~~~~~a~~~~ym~~~ggitrE~la~vAvka~~~a~~nP~A~~~~~~~t~~~~~d~~~~~~e~l~s~~i~~pl~~~d~s~~ 258 (438)
T PTZ00455 179 FPCLFAKRMKYIQEHGHFTMEDTARVAAKAYANGNKNPLAHMHTRKLSLEFCTGASDKNPKFLGNETYKPFLRMTDCSQV 258 (438)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcCCHhhccCCCCCceeeccccccchhhhcCCcccCcCchhcCCCc
Confidence 00 10 011121110 012211 01111 12345557
Q ss_pred cCceEEEEEcchHHHHhcCCee----eEEEEEEEEecCCCCCCCC---CCChHHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 008700 396 GEGAGVLLLEELEHAKKRGAKI----YAEFRGGSFTSDAYHMTEP---HPDGVGVILCIEKALAHSGVSREDVNYINAHA 468 (557)
Q Consensus 396 gEGAaalvLe~~~~A~~~G~~i----~a~I~G~~~~~d~~~~~~~---~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hg 468 (557)
+|||+++||.+++.|++.+.++ .++|+|++...+.... .+ ...+. ...+++++|+++|++++|||++|+|.
T Consensus 259 sDGAaA~vl~See~A~~l~~~p~~~~~v~i~g~~~~~~~~~~-~~~~~~~~~~-~~~A~~~a~~~AGl~~~DiD~~Ei~d 336 (438)
T PTZ00455 259 SDGGAGLVLASEEGLQKMGLSPNDSRLVEIKSLACASGNLYE-DPPDATRMFT-SRAAAQKALSMAGVKPSDLQVAEVHD 336 (438)
T ss_pred cccceEEEEecHHHHHhcCCCCCCCccEEEEEEEEecCCccc-CccccccchH-HHHHHHHHHHHcCCCHHHCcEeeecc
Confidence 8999999999999999988776 6899999987653221 11 11222 36899999999999999999999999
Q ss_pred CCCccCcHHHHHHHHHH-hcC-----------------CCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 469 TSTPAGDIKEYQALIHC-FGQ-----------------NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 469 tgt~~~D~~E~~Al~~~-~~~-----------------~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+++. .|...++.. |.. +.++++++.--.+|||.||+|+.+++++++||+.
T Consensus 337 aFa~----~~l~~~e~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~GHP~gAtG~~~v~e~~~QLrg 404 (438)
T PTZ00455 337 CFTI----AELLMYEALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLSFGHPVGATGVKQIMEVYRQMKG 404 (438)
T ss_pred cChH----HHHHHHHHcCCCCCCchHHHHhcCCcccCCCceeeCCCchhhcCCCcchHHHHHHHHHHHHHhh
Confidence 9887 344333322 111 1245555555567999999999999999999985
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=199.20 Aligned_cols=250 Identities=19% Similarity=0.249 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+|+|+++++|| ++++|+..+... ....+...+
T Consensus 22 ~~~La~~A~~~Al~dAGl~~~dID-------~~~~g~~~~~~~----------------------------~~~~~~~~l 66 (391)
T PRK08256 22 YPDMAAEAGRAALADAGIDYDAVQ-------QAYVGYVYGDST----------------------------SGQRALYEV 66 (391)
T ss_pred HHHHHHHHHHHHHHHcCCChHHCC-------eeEEEEEeCCcc----------------------------hhHHHHHHc
Confidence 467999999999999999988776 466665432110 001245568
Q ss_pred CCCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhh---------HHHH----------H------
Q 008700 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG---------LGGF----------V------ 367 (557)
Q Consensus 315 gl~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~---------~~~~----------~------ 367 (557)
|+++ |.++|+++|+|++.||..|+++|++|++|.+||+|+|.+.. +.. +..+ .
T Consensus 67 Gl~~~~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (391)
T PRK08256 67 GMTGIPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFDKALAELQGFDPAPPAL 146 (391)
T ss_pred CCCCCCCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccccccccccccccchhhhhhhhhhhhcccccCCccH
Confidence 9988 99999999999999999999999999999999999998632 100 0000 0
Q ss_pred -Hhhhhh-----c----------------c--CCCCCCCC-CCCc--------------CCCCCceecCceEEEEEcchH
Q 008700 368 -ACRALS-----Q----------------R--NNDPTKAS-RPWD--------------INRDGFVMGEGAGVLLLEELE 408 (557)
Q Consensus 368 -~~~~Ls-----~----------------~--~~~p~~~~-rpfd--------------~~~dG~v~gEGAaalvLe~~~ 408 (557)
.+...+ + . ..+|.... +|.+ ..-|...++|||+++||.+++
T Consensus 147 ~~~a~~a~~y~~~~G~t~e~~a~vav~~~~~A~~np~A~~~~~~t~e~~~~s~~i~~Pl~~~d~~~~~DGAaA~il~s~~ 226 (391)
T PRK08256 147 RMFGGAGREHMEKYGTTAETFAKIGVKARRHAANNPYAQFRDEYTLEDVLASPMIWGPLTRLQCCPPTCGAAAAIVCSEE 226 (391)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhcCCCCCHHHHhcCCcccCCCcHhhcCCCCCCeEEEEEecHH
Confidence 000000 0 0 00121110 0111 012455679999999999999
Q ss_pred HHHhcCCeeeEEEEEEEEecCCCCCCCC-C---C-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH
Q 008700 409 HAKKRGAKIYAEFRGGSFTSDAYHMTEP-H---P-DGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483 (557)
Q Consensus 409 ~A~~~G~~i~a~I~G~~~~~d~~~~~~~-~---p-~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~ 483 (557)
.|++.+.+++++|.|++...+....... . . .......+++++|+++|++++|||++|+|.+++. .|...++
T Consensus 227 ~a~~~~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~ag~~~~DiD~~ei~d~f~~----~~l~~le 302 (391)
T PRK08256 227 FARKHGLDRAVEIVAQAMTTDTPSTFDGRSMIDLVGYDMTRAAAQQVYEQAGIGPEDIDVVELHDCFSA----NELLTYE 302 (391)
T ss_pred HHHhcCCCCCEEEEEEEEeccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEeeccCCcH----HHHHHHH
Confidence 9998886778999998877664322111 1 1 1234567999999999999999999999999888 3443333
Q ss_pred HH-hcCC---------------C--CcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 484 HC-FGQN---------------R--GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 484 ~~-~~~~---------------~--~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.. |..+ . +++.+..--..||+.||+|+.+++++++||+..
T Consensus 303 ~lg~~~~Ge~~~~~~~G~~~~~G~~pvN~~GG~ls~Ghp~gasG~~~~~e~~~QL~g~ 360 (391)
T PRK08256 303 ALGLCPEGEAEKFIDDGDNTYGGRWVVNPSGGLLSKGHPLGATGLAQCAELTWQLRGT 360 (391)
T ss_pred HcCCCCCCchHHHHHCCCccCCCCeeeCCCCccccCCCCccHHHHHHHHHHHHHhcCC
Confidence 32 1110 1 334444444469999999999999999999864
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=198.69 Aligned_cols=250 Identities=20% Similarity=0.264 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+.... .....++..++..+|
T Consensus 30 ~eL~~~a~~~al~~agl~~~~ID-------~vi~G~~~~~-------------------------~~~~~~ar~~a~~aG 77 (428)
T PRK08963 30 VDLGKMVVGELLARSEIDPELIE-------QLVFGQVVQM-------------------------PEAPNIAREIVLGTG 77 (428)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEeccCCC-------------------------CCccHHHHHHHHHCC
Confidence 56889999999999999998887 6999975310 011234667888999
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH--H-----------------H---------
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL--G-----------------G--------- 365 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~--~-----------------~--------- 365 (557)
+. -|.++|+++|+||+.||..|+++|++|++|++||||+|.+.....+ . .
T Consensus 78 l~~~~P~~tV~~aCaSG~~Ai~~Aa~~I~sG~~dvvLvgG~Esms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (428)
T PRK08963 78 MNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSSVLPIGVSKKLARALVDLNKARTLGQRLKLFSRLRL 157 (428)
T ss_pred CCCCCcceeehhhhHHHHHHHHHHHHHHHCCCCCEEEEecccccCCCccccccccccchhccccccccCcccccccccch
Confidence 95 5999999999999999999999999999999999999987542200 0 0
Q ss_pred ---H---HH---------hhhhhc-------------------------cC--C------------CCCC-------CCC
Q 008700 366 ---F---VA---------CRALSQ-------------------------RN--N------------DPTK-------ASR 384 (557)
Q Consensus 366 ---~---~~---------~~~Ls~-------------------------~~--~------------~p~~-------~~r 384 (557)
+ .. ++..++ .+ . .|.. ..|
T Consensus 158 ~~~~~~~~~~~~~~~~~~m~~~A~~~~~~ygisre~~~~~avksh~~a~~~~~~g~~~~ei~p~~~~p~a~~~~~D~~~r 237 (428)
T PRK08963 158 RDLLPVPPAVAEYSTGLRMGDTAEQMAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDEVMTAHVPPYKQPLEEDNNIR 237 (428)
T ss_pred hhccccCcccccccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccceeeEEecCCceeeCCCCCCC
Confidence 0 00 000000 00 0 0111 011
Q ss_pred ------------C-Cc------CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHH
Q 008700 385 ------------P-WD------INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVIL 445 (557)
Q Consensus 385 ------------p-fd------~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ 445 (557)
| |+ ...|...++|||+++||++++.|++.+.+++++|.+++...... ... .......
T Consensus 238 ~~~t~e~~~~~~~v~~p~~g~lt~~~~~~~~DGAaA~vl~see~A~~l~~~p~~~i~g~~~~~~~~---~~~-~~~~~~~ 313 (428)
T PRK08963 238 GDSTLEDYAKLRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYLRSYAFAAIDV---WQD-MLLGPAY 313 (428)
T ss_pred CCCCHHHHhcCCccccCCCCceehhhcCCCCCceEEEEEecHHHHHHcCCCccEEEEEEecccCCc---hhh-hhhHHHH
Confidence 1 11 01234457999999999999999999999999999988754111 001 1234567
Q ss_pred HHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH--HH----hcC-----C---CCcccccCcccccchhhhHHHH
Q 008700 446 CIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI--HC----FGQ-----N---RGLRVNSTKSMIGHLLGAAGAV 511 (557)
Q Consensus 446 ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~--~~----~~~-----~---~~~~v~s~K~~iGH~~gAaG~~ 511 (557)
+++++|+++|++++|||++|+|..++.. ...+++.+. .. ++. . .++++++.--..||+.||+|+.
T Consensus 314 a~~~al~~AGl~~~DiD~~Ei~d~Fa~~-~l~~~e~l~~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~GhP~gasG~~ 392 (428)
T PRK08963 314 ATPLALERAGLTLADLTLIDMHEAFAAQ-TLANLQMFASERFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGAR 392 (428)
T ss_pred HHHHHHHHcCCCHHHCCEEEEccccHHH-HHHHHHHhcCchhhhhcccccccCCCCCCCccCCCCCHHhcCCCccccHHH
Confidence 8999999999999999999999998862 223333331 00 010 0 1344555555579999999999
Q ss_pred HHHHHHHHHHc
Q 008700 512 EAIAVVQAIRT 522 (557)
Q Consensus 512 ~li~~~~~l~~ 522 (557)
+++++++||+.
T Consensus 393 ~~~e~~~qLrg 403 (428)
T PRK08963 393 MITQTLHELRR 403 (428)
T ss_pred HHHHHHHHHhh
Confidence 99999999985
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=195.86 Aligned_cols=246 Identities=19% Similarity=0.236 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+.... ......++..+....|
T Consensus 27 ~~L~~~a~~~al~dagl~~~~ID-------~vv~g~~~~~------------------------~~~~~~~~~~~~l~~g 75 (382)
T PRK07801 27 ADLGAHVLKGLVDRTGIDPAAVD-------DVIFGCVDTI------------------------GPQAGNIARTSWLAAG 75 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-------EEEEEeeccC------------------------CcccccHHHHHHHHcC
Confidence 56899999999999999998888 7888853100 0000112233333445
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hh--h--HH---H----------H-HHhh----
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PI--G--LG---G----------F-VACR---- 370 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~--~--~~---~----------~-~~~~---- 370 (557)
+ ..|.++|+++|+|++.||..|+++|++|++|++||+|+|.+.. +. . .. . + ...+
T Consensus 76 l~~~~p~~~v~~acaSg~~Av~~Aa~~I~sG~~d~vLv~G~e~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 155 (382)
T PRK07801 76 LPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPISSAMTAGEQLGFTSPFAESKGWLHRYGDQEV 155 (382)
T ss_pred CCCCCceeeecchhhhHHHHHHHHHHHHHCCCCCEEEEcchhhhcCCcccccccccccccCCcccccCcchhhhccCCCC
Confidence 4 4699999999999999999999999999999999999996532 20 0 00 0 0 0000
Q ss_pred -------hh-hc--------------------cC-CC--------CC-----------------CCCCCCc-----CCCC
Q 008700 371 -------AL-SQ--------------------RN-ND--------PT-----------------KASRPWD-----INRD 391 (557)
Q Consensus 371 -------~L-s~--------------------~~-~~--------p~-----------------~~~rpfd-----~~~d 391 (557)
.+ .+ .+ .. |. ...+|.. ...|
T Consensus 156 ~~~~~a~~~~~~yG~tre~~a~vav~~~~~a~~n~~ag~~~~~~~p~~~~~~d~~~~~~t~e~~~~~~~i~~~~pl~~~d 235 (382)
T PRK07801 156 SQFRGAELIAEKWGISREEMERFALESHRRAFAAIRAGRFDNEIVPVGGVTVDEGPRETSLEKMAGLKPLVEGGRLTAAV 235 (382)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccCccccCCcCcCCHHHHhcCCCCCCCCCccccc
Confidence 00 00 00 00 00 0011111 1235
Q ss_pred CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCC
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATST 471 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt 471 (557)
...++|||+++||++++.|++.+.+++++|.+++...+.... ...+...+++++|+++|++++|||++|+|..++
T Consensus 236 ~~~~~DGaaa~il~s~e~a~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~a~~~a~~~agi~~~did~~e~~d~Fa 310 (382)
T PRK07801 236 ASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDPVF-----MLTAPIPATRYALEKTGLSIDDIDVVEINEAFA 310 (382)
T ss_pred CCCCCCceEEEEEecHHHHHHCCCCccEEEEEEEEecCChHh-----hccChHHHHHHHHHHcCCCHHHcCEeeecccch
Confidence 556799999999999999999998888999998765432110 111235789999999999999999999999888
Q ss_pred ccCcHHHHHHHHHHhc-CCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 472 PAGDIKEYQALIHCFG-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 472 ~~~D~~E~~Al~~~~~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
. .|...++. +| ..+++++++.+..+||+.||+|+.+++++++||+.
T Consensus 311 ~----~~~~~~e~-lG~~~~pvN~~GG~l~~Ghp~gasG~~~~~e~~~qL~~ 357 (382)
T PRK07801 311 P----VVLAWLKE-TGADPAKVNPNGGAIALGHPLGATGAKLMTTLLHELER 357 (382)
T ss_pred H----HHHHHHHH-hCCCchhcCCCcchhhhcCcHHHHHHHHHHHHHHHHHh
Confidence 7 44444443 34 23467888888889999999999999999999986
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=193.27 Aligned_cols=251 Identities=17% Similarity=0.147 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+....+. .. .....++..+|
T Consensus 28 ~~L~~ea~~~AL~dagl~~~dID-------~v~vg~~~~~~~---------------------~~----~~~~~~a~~lG 75 (398)
T PRK06157 28 EDLMVEAFLEALADAGIEPKDID-------AAWFGTHYDEIG---------------------SG----KSGTPLSRALR 75 (398)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecccccc---------------------cc----chhHHHHHHcC
Confidence 56899999999999999999888 788886421000 00 01134667899
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-----------------------HHHHHHhhh
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-----------------------LGGFVACRA 371 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-----------------------~~~~~~~~~ 371 (557)
+.+ |.++|+++|+|++.||++|+++|++|++|++||+|+|.+..... ...+...+.
T Consensus 76 l~~~~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~ 155 (398)
T PRK06157 76 LPNIPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMTMPNVTAPGNFAQLASAY 155 (398)
T ss_pred CCCCCEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCccccccccccccchhcccccCchHHHHHHHHHHH
Confidence 976 88899999999999999999999999999999999997532100 000000000
Q ss_pred hhcc----------------------CCCCCCCC------------C----CCcCCCCCceecCceEEEEEcchHHHHhc
Q 008700 372 LSQR----------------------NNDPTKAS------------R----PWDINRDGFVMGEGAGVLLLEELEHAKKR 413 (557)
Q Consensus 372 Ls~~----------------------~~~p~~~~------------r----pfd~~~dG~v~gEGAaalvLe~~~~A~~~ 413 (557)
+.+. ..+|+... + |+. .-|...++|||+++||.+++.|++.
T Consensus 156 ~~~yG~t~e~~~~~~a~vav~~~~~A~~np~A~~r~~~t~e~v~~s~~v~~Pl~-~~d~~~~~DGAaA~vl~s~~~A~~l 234 (398)
T PRK06157 156 AAKYGVSREDLKRAMAHVSVKSHANGARNPKAHLRKAVTEEQVLKAPMIAGPLG-LFDCCGVSDGAAAAIVTTPEIARAL 234 (398)
T ss_pred HHHhCCCHHHHcccccHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCc-hhccCCCCCccEEEEEecHHHHHhh
Confidence 0000 00121111 1 111 1255668999999999999999988
Q ss_pred CCeeeEEEEEEEEecCCCCCC---CCCCC-hHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCCccCcHHHHHHHHHH-h
Q 008700 414 GAKIYAEFRGGSFTSDAYHMT---EPHPD-GVGVILCIEKALAHSGVS--REDVNYINAHATSTPAGDIKEYQALIHC-F 486 (557)
Q Consensus 414 G~~i~a~I~G~~~~~d~~~~~---~~~p~-~~~~~~ai~~aL~~Agl~--~~dId~ve~hgtgt~~~D~~E~~Al~~~-~ 486 (557)
+.+..++|+|++...+..... ...+. ......+++++|+++||+ ++|||++|+|++++. .|...++.. |
T Consensus 235 ~~~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGl~~~~~Did~~Ei~D~Fs~----~~l~~~e~lGl 310 (398)
T PRK06157 235 GKKDPVYVKALQLAVSNGWELQYNGWDGSYFPTTRIAARKAYREAGITDPREELSMAEVHDCFSI----TELVTMEDLGL 310 (398)
T ss_pred CCCCCeEEEEEEEecccccccccccccccccHHHHHHHHHHHHHcCCCCchhcCCEEEEecCChH----HHHHHHHHcCC
Confidence 875678999998765532111 11111 223457899999999998 799999999999888 333333322 1
Q ss_pred cC---------------CCCcccc--cCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 487 GQ---------------NRGLRVN--STKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 487 ~~---------------~~~~~v~--s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.. ...++++ +.--.+||+.+|+|+.+++++++||+..
T Consensus 311 ~~~Ge~~~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~ 364 (398)
T PRK06157 311 SERGQAWRDVLDGFFDADGGLPCQIDGGLKCFGHPIGASGLRMLYEMYLQLLGR 364 (398)
T ss_pred CCCCchHHHHHCCCccCCCCeeecCCCCcccCCCcccHhHHHHHHHHHHHhccc
Confidence 11 1123444 4444569999999999999999999864
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-20 Score=193.14 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.++++++|+|+|+++++|| .|++|+.... +.....++..+....|
T Consensus 27 ~~L~~~a~~~al~~a~l~~~~Id-------~vi~G~~~~~------------------------~~~~~~~ar~~~l~~g 75 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADPALIE-------DVIMGCVSQV------------------------GEQATNVARNAVLASK 75 (390)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecccc------------------------ccccccHHHHHHHHcC
Confidence 56899999999999999999888 6999975310 0001123333444445
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-HH---------------HHHH--------h
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-LG---------------GFVA--------C 369 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-~~---------------~~~~--------~ 369 (557)
| .-|.++|+++|+||+.|+..|++.|++|++|++||||+|.|..... .. .+.. +
T Consensus 76 l~~~vP~~tV~~~CaSG~~Ai~~A~~~I~sG~~dvvLagGvEsmS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (390)
T PRK06504 76 LPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVPMGSPSTLPAKNGLGHYKSPGMEERYPGIQFSQ 155 (390)
T ss_pred CCCCCceEEEechhhHHHHHHHHHHHHHHCCCCCEEEEeeeeecCCCccccccccccccccccccccccccccCCCCCCH
Confidence 5 4599999999999999999999999999999999999998753210 00 0000 0
Q ss_pred ----hhhhc---------------------c----C---C------------CC-----CC------------CCCCCcC
Q 008700 370 ----RALSQ---------------------R----N---N------------DP-----TK------------ASRPWDI 388 (557)
Q Consensus 370 ----~~Ls~---------------------~----~---~------------~p-----~~------------~~rpfd~ 388 (557)
..+.+ . . . .| |+ ..+|...
T Consensus 156 ~~aae~~a~~ygisre~~d~~A~ksh~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~~De~~r~~~t~e~l~~~~~~~~ 235 (390)
T PRK06504 156 FTGAEMMAKKYGLSKDQLDEFALQSHQRAIAATQAGKFKAEIVPLEITRADGSGEMHTVDEGIRFDATLEGIAGVKLIAE 235 (390)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhHHcCCCccccccccccCCCCCceEEccCCCCCCCCCHHHHhcCCCCCC
Confidence 00000 0 0 0 00 00 1122211
Q ss_pred -----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 008700 389 -----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463 (557)
Q Consensus 389 -----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ 463 (557)
-.|...++|||+++||.+++.|++.+.++.++|.++....... .....+...+++++|+++|++++|||+
T Consensus 236 ~g~lt~~n~s~~~DGAaA~vl~s~~~A~~l~~~p~~~i~~~~~~~~~~-----~~~~~~~~~a~~~a~~~agl~~~Did~ 310 (390)
T PRK06504 236 GGRLTAATASQICDGASGVMVVNERGLKALGVKPLARIHHMTVIGGDP-----VIMLEAPLPATERALKKAGMKIDDIDL 310 (390)
T ss_pred CCCCcCccCCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEeecCc-----hhhhccHHHHHHHHHHHcCCCHHHCCE
Confidence 1245567899999999999999998888877888877654321 112335567999999999999999999
Q ss_pred EEEcCCCCccCcHHHHHHHHHHhc-CCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 464 INAHATSTPAGDIKEYQALIHCFG-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 464 ve~hgtgt~~~D~~E~~Al~~~~~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+|+|..++. .|...++. +| ...++++++..-.+||+.||+|+.++..++.+|++
T Consensus 311 ~Ei~d~Fa~----~~l~~~e~-lG~~~~pvN~~GG~la~Ghp~gatG~r~~~~l~~~lr~ 365 (390)
T PRK06504 311 YEVNEAFAS----VPLAWLKA-TGADPERLNVNGGAIALGHPLGASGTKLMTTLVHALKQ 365 (390)
T ss_pred EEecccchH----HHHHHHHH-hCCCCCCcCCCCcHHhcCCCcchhHHHHHHHHHHHHHh
Confidence 999998887 34444433 34 22367777888889999999999999999999986
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.9e-20 Score=195.52 Aligned_cols=249 Identities=20% Similarity=0.313 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|+.... .. ....+..++..+|
T Consensus 28 ~~L~~~A~~~Al~dAgl~~~dID-------~vi~g~~~~~------------------------~~-~~~~a~~v~~~lG 75 (426)
T PRK08170 28 SDLAVAAGRALLNRQPFAPDDLD-------EVILGCAMPS------------------------PD-EANIARVVALRLG 75 (426)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccCC------------------------CC-cChHHHHHHHHhC
Confidence 67899999999999999999888 7899865310 00 1134567888999
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh----------------------H-------H
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------------------L-------G 364 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~----------------------~-------~ 364 (557)
+. .|.++|+++|+|++.+|..|+++|++|++|++||+|+|.+..... + .
T Consensus 76 l~~~~p~~~v~~~CaSg~~al~~A~~~I~sG~~d~vLv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (426)
T PRK08170 76 CGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSHAPLLFSEKMVRWLAGWYAAKSIGQKLAALGKLRP 155 (426)
T ss_pred cCCCceeeeccchhhHHHHHHHHHHHHHHCCCCCEEEEEEEecccCCccccccccccchhccccccccCccccccccccc
Confidence 94 499999999999999999999999999999999999996532100 0 0
Q ss_pred HH-----------H------Hhhhhh---------------------ccC--C------------------CC---CC--
Q 008700 365 GF-----------V------ACRALS---------------------QRN--N------------------DP---TK-- 381 (557)
Q Consensus 365 ~~-----------~------~~~~Ls---------------------~~~--~------------------~p---~~-- 381 (557)
.+ . .++..+ +.+ . +| ++
T Consensus 156 ~~~~~~~~~~~g~~~~~~~~~~a~~a~~~~~~ygitre~~a~vav~s~~~a~~A~~~g~~~~i~pv~~~~~np~a~de~~ 235 (426)
T PRK08170 156 SYLAPVIGLLRGLTDPVVGLNMGQTAEVLAHRFGITREQMDAYAARSHQRLAAAQAEGRLKEVVPLFDRDGKFYDHDDGV 235 (426)
T ss_pred cccccccccCccccccccCcCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcceEeeeecCCCCeeccCCCC
Confidence 00 0 000000 000 0 01 00
Q ss_pred ----------CCCC-CcCC------CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHH
Q 008700 382 ----------ASRP-WDIN------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVI 444 (557)
Q Consensus 382 ----------~~rp-fd~~------~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~ 444 (557)
..+| |+.. .|...++|||+++||++++.|++.+.++.++|.++...... |...+.+..
T Consensus 236 r~~~t~e~~~~~~~v~~~p~~~lt~~~~s~~~DGAaA~vl~s~e~A~~~~~~p~~~i~~~~~~~~~-----~~~~~~~~~ 310 (426)
T PRK08170 236 RPDSSMEKLAKLKPFFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPLGRIVDSQWAALD-----PSQMGLGPV 310 (426)
T ss_pred CCCCCHHHHhcCCCcccCCCCCEeccccCCCCCceEEEEEecHHHHHHCCCCceEEEEEeeEeeeC-----chhhcccHH
Confidence 0111 2201 35566799999999999999999998888899988765432 222233456
Q ss_pred HHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHH-h-----------cC--CCCcccccCcccccchhhhHHH
Q 008700 445 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHC-F-----------GQ--NRGLRVNSTKSMIGHLLGAAGA 510 (557)
Q Consensus 445 ~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~-~-----------~~--~~~~~v~s~K~~iGH~~gAaG~ 510 (557)
.+++++|+++|++++|||++|+|..++.. ....++.+... | |. ..++++++.--.+||+.||+|+
T Consensus 311 ~a~~~al~~aGl~~~did~~ei~daFa~~-~l~~l~~le~lGf~~~G~g~~~~~G~~~~~pvN~~GG~la~GHP~GAtG~ 389 (426)
T PRK08170 311 HAATPLLQRHGLTLEDLDLWEINEAFAAQ-VLACLAAWADEEYCREQLGLDGALGELDRERLNVDGGAIALGHPVGASGA 389 (426)
T ss_pred HHHHHHHHHcCCCHHHcCEEEecchhHHH-HHHHHHHhccccchhcccccccccCCCCcceecCCCCHHHhCCCccCccH
Confidence 89999999999999999999999988872 11111222110 0 10 1234444444456999999999
Q ss_pred HHHHHHHHHHHc
Q 008700 511 VEAIAVVQAIRT 522 (557)
Q Consensus 511 ~~li~~~~~l~~ 522 (557)
.+++.++.+|++
T Consensus 390 ~~~~~l~~~l~~ 401 (426)
T PRK08170 390 RIVLHLLHALKR 401 (426)
T ss_pred HHHHHHHHHHHh
Confidence 999999999976
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-20 Score=194.31 Aligned_cols=256 Identities=21% Similarity=0.251 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++++.... ....+..+..++..+|
T Consensus 24 ~~La~~A~~~Al~dAgl~~~dId-------~vi~~~~~~~------------------------~~~~~~~a~~va~~lG 72 (399)
T PRK06059 24 VEYGVVAARAALADAGLDWRDVQ-------LVVGADTIRN------------------------GYPGFVAGATFAQALG 72 (399)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccCC------------------------ccCCccHHHHHHHHhC
Confidence 67899999999999999998777 5676653210 0111223567889999
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh--h----------H-----HHHH---Hhhhhh-
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI--G----------L-----GGFV---ACRALS- 373 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~--~----------~-----~~~~---~~~~Ls- 373 (557)
+++ |.++|+++|+|++.||..|+++|++|++|.+||+|+|.+.... . + .++. .++.+.
T Consensus 73 ~~~~~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~ 152 (399)
T PRK06059 73 WNGAPVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTPKGFFAPVGGERPDDPDWLRFHLIGATNPVYFALLAR 152 (399)
T ss_pred CCCCceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccCCCCCcccccccccccchhhcccCCCccHHHHHHHHH
Confidence 987 8999999999999999999999999999999999999754210 0 0 0000 000000
Q ss_pred ----c----------------c--CCCCCCCCC-CCcC--------------CCCCceecCceEEEEEcchHHHHhc--C
Q 008700 374 ----Q----------------R--NNDPTKASR-PWDI--------------NRDGFVMGEGAGVLLLEELEHAKKR--G 414 (557)
Q Consensus 374 ----~----------------~--~~~p~~~~r-pfd~--------------~~dG~v~gEGAaalvLe~~~~A~~~--G 414 (557)
+ . ..+|+...| |.+. .-|...++|||+++||.+++.|++. +
T Consensus 153 ~~~~~yg~s~e~~a~v~~~~~~~a~~Np~A~~r~~~t~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~~ 232 (399)
T PRK06059 153 RRMDLYGATVEDFAQVKVKNARHGLLNPNARYRKEVTVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFARRHLGS 232 (399)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEecHHHHHhhccc
Confidence 0 0 012221111 1110 1256668999999999999999887 6
Q ss_pred CeeeEEEEEEEEecCCCCCC--------------CCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHH
Q 008700 415 AKIYAEFRGGSFTSDAYHMT--------------EPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQ 480 (557)
Q Consensus 415 ~~i~a~I~G~~~~~d~~~~~--------------~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~ 480 (557)
.+..++|+|++...+..... .+.+.......+++++|+++|++++|||++|+|++++.. ....++
T Consensus 233 ~~~~v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~agl~~~Did~~El~d~f~~~-~l~~~e 311 (399)
T PRK06059 233 VAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAPERVFKDQILDAAYAEAGIGPEDLSLAEVYDLSTAL-ELDWYE 311 (399)
T ss_pred cCCceEEEEEEEecccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCcEEeecccChHH-HHHHHH
Confidence 66678999988765332110 011112223578999999999999999999999998773 222223
Q ss_pred HHH--------HHh-------cCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 481 ALI--------HCF-------GQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 481 Al~--------~~~-------~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+|. +.+ +...++++++.--..||+.||+|+.+++++++||+..
T Consensus 312 ~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qLrg~ 369 (399)
T PRK06059 312 HLGLCPKGEAEALLRSGATTLGGRIPVNPSGGLACFGEAIPAQAIAQVCELTWQLRGQ 369 (399)
T ss_pred HcCCCCCCcHHHHHHCCCccCCCCeeecCCCccccCCccCCccHHHHHHHHHHHhccC
Confidence 331 111 0111444555555569999999999999999999863
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=193.33 Aligned_cols=247 Identities=21% Similarity=0.318 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| .|++|+..+ ......++..++...|
T Consensus 32 ~~L~~~a~~~al~~agl~~~~Id-------~vi~G~~~~-------------------------~~~~~~~ar~~~l~aG 79 (430)
T TIGR02446 32 VDLGKMVVSELLARSEIDPKLIE-------QLVFGQVVQ-------------------------MPEAPNIAREIVLGTG 79 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccC-------------------------cCccchHHHHHHHhCC
Confidence 56899999999999999998887 589997531 0111335667777789
Q ss_pred CC-C-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhhHH----------------H-----------
Q 008700 316 WM-G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGLG----------------G----------- 365 (557)
Q Consensus 316 l~-G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~~~----------------~----------- 365 (557)
+. + |.++|+++|+||+.|+..|+++|++|++|++||+|+|.+.. |..+. .
T Consensus 80 l~~~~p~~~V~~~CaSG~~A~~~a~~~I~sG~~dvvla~G~E~mS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (430)
T TIGR02446 80 MNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSSVLPIGVSKKLAASLVDLNKARTLGQKLKVFSRLGL 159 (430)
T ss_pred CCCCCchhhhhhhhhHHHHHHHHHHHHHHCCCCCEEEEeeeEcccCCcccccccccccccccccccccCccccccccchh
Confidence 86 3 99999999999999999999999999999999999999853 11000 0
Q ss_pred ---H--H----------Hhhhhhc---------------------c--C----------------CCCCCCC-------C
Q 008700 366 ---F--V----------ACRALSQ---------------------R--N----------------NDPTKAS-------R 384 (557)
Q Consensus 366 ---~--~----------~~~~Ls~---------------------~--~----------------~~p~~~~-------r 384 (557)
+ . .++..++ . . ..|.... |
T Consensus 160 ~~~~~~~~~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~a~~A~~~g~~~~ei~p~~~np~a~~~~~D~~~r 239 (430)
T TIGR02446 160 KDLMPVPPAVAEYSTGLSMGQTAEQMAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGEVMTAFPPPYKQWIAEDNNIR 239 (430)
T ss_pred hhhcccCcccccccCCCcHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeeeeeecCCceEecccCCCC
Confidence 0 0 0110000 0 0 0111000 1
Q ss_pred ------------C-Cc------CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHH
Q 008700 385 ------------P-WD------INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVIL 445 (557)
Q Consensus 385 ------------p-fd------~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ 445 (557)
| |+ ...|...++|||+++||.+++.|++.+.++.++|++++........ . .......
T Consensus 240 ~~~t~e~~~~~~~i~~p~~g~lt~~~~~~~~DGAaA~il~se~~A~~l~~~p~~~i~~~~~~~~~~~~-~---~~~~~~~ 315 (430)
T TIGR02446 240 HNSTLAGYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMREGRAKELGMEPLGYIRSYAFTAIDVWQ-D---MLMGPSY 315 (430)
T ss_pred CCCCHHHHhcCCceecCCCCceechhcCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEeeccCchH-h---hcccHHH
Confidence 1 11 1234556799999999999999999888888899998765321100 0 1122357
Q ss_pred HHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHH----h-----c------CC--CCcccccCcccccchhhhH
Q 008700 446 CIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHC----F-----G------QN--RGLRVNSTKSMIGHLLGAA 508 (557)
Q Consensus 446 ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~----~-----~------~~--~~~~v~s~K~~iGH~~gAa 508 (557)
+++++|+++|++++|||++|+|..++. .|...++.. | + .- .++++++.--..|||.||+
T Consensus 316 a~~~al~~Agl~~~Did~~Ei~daFa~----~~l~~~e~lg~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~GhP~gat 391 (430)
T TIGR02446 316 ATPLALQRAGLALSDLTLIDMHEAFAA----QTLANVQMFASDKFAQENLGRSKAMGEIDMSKFNVLGGSIAYGHPFAAT 391 (430)
T ss_pred HHHHHHHHcCCCHHHCCEEEeccccHH----HHHHHHHHhcCcchhhhcccccccCCCCCCCccCCCCCHHhcCCCcccc
Confidence 899999999999999999999999888 333333332 1 1 00 1444555555579999999
Q ss_pred HHHHHHHHHHHHHc
Q 008700 509 GAVEAIAVVQAIRT 522 (557)
Q Consensus 509 G~~~li~~~~~l~~ 522 (557)
|+.+++++++||+.
T Consensus 392 G~~~v~e~~~qL~g 405 (430)
T TIGR02446 392 GARMITQTLRELKR 405 (430)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999985
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=190.70 Aligned_cols=248 Identities=22% Similarity=0.223 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|||+++++|| ++++++... ......++..+|
T Consensus 29 ~eL~~eA~~~Al~dAgl~~~dID-------~iv~~~~~~-----------------------------~~~~~~la~~lG 72 (384)
T PRK06158 29 MELLAQAAHRALADAGLTMADVD-------GLFTASPDD-----------------------------ALWGLSVAEYLG 72 (384)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEecCCC-----------------------------CCcHHHHHHHcC
Confidence 56899999999999999998888 778775310 011235778889
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEe-ccccccc---------------h------hhHHHHHHhhhh
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCG-GSDAAVI---------------P------IGLGGFVACRAL 372 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvg-Gve~~~~---------------p------~~~~~~~~~~~L 372 (557)
+++ |.+.++++|+|+..+|..|+++|++|.+|+|||+ |.+.+.. | ..+.++...+.+
T Consensus 73 l~~~~~~~~~~g~~s~~~al~~A~~~I~sG~~d~vLV~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~a~~ym 152 (384)
T PRK06158 73 IRPRFVDGTMIGGSSFLAHLLPAALALEAGLCDVALICYGSNQRSAGGKLRSMLDPQPYEAPYKPVNPVSAYALAAARHM 152 (384)
T ss_pred CCCeeeccccCccHHHHHHHHHHHHHHHcCCCCEEEEeeccccccCcccccccccccchhcccCCCCcHHHHHHHHHHHH
Confidence 865 7788999999999999999999999999999985 6664311 0 000111000000
Q ss_pred hcc------------------CCCCCCC----------------CCCCcCCCCCceecCceEEEEEcchHHHHhcCCeee
Q 008700 373 SQR------------------NNDPTKA----------------SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIY 418 (557)
Q Consensus 373 s~~------------------~~~p~~~----------------~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~ 418 (557)
.+. ..+|... +.|+.. .|+..++||++++||++++.|++.+.++
T Consensus 153 ~~yG~t~e~~a~vav~~~~~a~~NP~A~~~~~~t~e~vl~s~~ia~Pl~~-~d~~~~~DGAaAvVL~s~e~A~~l~~~~- 230 (384)
T PRK06158 153 HQYGTTREQLAEVAVAARQWAQLNPEAFMRDPLTIDDVLAARMVSDPLSV-RDCCLVTDGAGAVVMVRADRARDLPRPP- 230 (384)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCchhhhCCCCCHHHHhcCCccCCCCch-hhcCCccCCeEEEEEecHHHHhhcCCCc-
Confidence 000 0112111 122222 4677899999999999999999877654
Q ss_pred EEEEEEEEecCCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHH--------Hh-cC
Q 008700 419 AEFRGGSFTSDAYHMT-EPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIH--------CF-GQ 488 (557)
Q Consensus 419 a~I~G~~~~~d~~~~~-~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~--------~~-~~ 488 (557)
..|.|++..++..... .+.........+++++|+++||+|+|||++|+|++++.. ..+++++|.- .+ ..
T Consensus 231 v~i~g~~~~~~~~~~~~~~~~~~~~~~~aa~~A~~~AGi~p~DId~~ElyD~Fs~~-~l~~~E~lG~~~~Ge~~~~~~~G 309 (384)
T PRK06158 231 VYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFAMAGLTPADIDVVELYDAFTIN-TILFLEDLGFCAKGEGGAFVEGG 309 (384)
T ss_pred EEEEEEEEecCCcccccccchhhhHHHHHHHHHHHHcCCCHHHCcEEEecCCchHH-HHHHHHHcCCCCCCcHHHHHHCC
Confidence 6688888776654332 233334456789999999999999999999999999882 3333333310 01 00
Q ss_pred ----CCCcccccCccc--ccchhhhHHHHHHHHHHHHHHcC
Q 008700 489 ----NRGLRVNSTKSM--IGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 489 ----~~~~~v~s~K~~--iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
...+||+...+. .||+ ||+|+.+++++++||+..
T Consensus 310 ~~~~~G~~PvN~sGG~ls~Ghp-gatG~~~~~E~~~QLrg~ 349 (384)
T PRK06158 310 RIAPGGRLPVNTNGGGLSCVHP-GMYGLFLLIEAVRQLRGE 349 (384)
T ss_pred CCccCCCccccCCChhhcCCCC-chhhHHHHHHHHHHHcCC
Confidence 012455544443 5999 999999999999999864
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=191.60 Aligned_cols=258 Identities=17% Similarity=0.206 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|||+++++|| +|++|+..+.... . ....... .. ....+
T Consensus 27 ~eLa~eA~~~AL~dAgl~~~dID-------~vi~g~~~~~~~~------------------~-~~~~~~~-~~--~~~~~ 77 (403)
T PRK06289 27 ADLTREVVDGTLAAAGVDADDIE-------VVHVGNFFGELFA------------------G-QGHLGAM-PA--TVHPA 77 (403)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccccccc------------------c-ccccchH-HH--HHhhc
Confidence 67899999999999999999888 7888875322100 0 0000111 11 12234
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh------HH---HH-----------HH-hhhhh
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG------LG---GF-----------VA-CRALS 373 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~------~~---~~-----------~~-~~~Ls 373 (557)
+.| |.++|+++|+|++.||..|+.+|++|++|+|||+|+|.+..... +. .+ .. +...+
T Consensus 78 ~~g~~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a 157 (403)
T PRK06289 78 LWGVPASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELMKTVPGDVAAEHLGAAAWTGHEGQDARFPWPSMFARVA 157 (403)
T ss_pred CCCCceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecCCCCchhhHHhhhcccccccccccCCCccHHHHHHHH
Confidence 434 89999999999999999999999999999999999997542210 00 00 00 00000
Q ss_pred c---------------------c--CCCCCCCCC------CCc--------------CCCCCceecCceEEEEEcchHHH
Q 008700 374 Q---------------------R--NNDPTKASR------PWD--------------INRDGFVMGEGAGVLLLEELEHA 410 (557)
Q Consensus 374 ~---------------------~--~~~p~~~~r------pfd--------------~~~dG~v~gEGAaalvLe~~~~A 410 (557)
+ . ..+|....+ |.+ .--|...++|||+++||.+++.|
T Consensus 158 ~~y~~~yG~t~e~la~va~~~~~~A~~NP~A~~~~~~~~~~~~~~d~~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e~a 237 (403)
T PRK06289 158 DEYDRRYGLDEEHLRAIAEINFANARRNPNAQTRGWAFPDEATNDDDATNPVVEGRLRRQDCSQVTDGGAGVVLASDAYL 237 (403)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCcHhhcCccccccccchhhhhcCCcccCCCchhhcCCCCCceeEEEEEcHHHH
Confidence 0 0 011211111 111 01245567899999999999999
Q ss_pred HhcCC-eeeEEEEEEEEecCCCCCCC------CCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHH
Q 008700 411 KKRGA-KIYAEFRGGSFTSDAYHMTE------PHP-DGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQAL 482 (557)
Q Consensus 411 ~~~G~-~i~a~I~G~~~~~d~~~~~~------~~p-~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al 482 (557)
++.+. ++.++|+|++..++...... .++ .......+++++|+++|++++|||++|+|+.++.. ..+..+++
T Consensus 238 ~~l~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~Agi~~~Didv~el~D~fa~~-~l~~le~l 316 (403)
T PRK06289 238 RDYADARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVRQAVLDAYRRAGVGLDDLDGFEVHDCFTPS-EYLAIDHI 316 (403)
T ss_pred HHhccCCCCEEEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCeEEeeeccchHH-HHHHHHHc
Confidence 88775 66789999988765432211 111 22345679999999999999999999999999882 33333333
Q ss_pred HHH--------hcC-----CCCcccccC--cccccchhhhHHHHHHHHHHHHHHcC
Q 008700 483 IHC--------FGQ-----NRGLRVNST--KSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 483 ~~~--------~~~-----~~~~~v~s~--K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.-+ +.+ ...++++.. --..||+.||+|+.++++++.||+..
T Consensus 317 Gl~~~Ge~~~~v~~G~~~~~G~lpvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~ 372 (403)
T PRK06289 317 GLTGPGESWKAIENGEIAIGGRLPINPSGGLIGGGHPVGASGVRMLLDAAKQVTGT 372 (403)
T ss_pred CCCCCCcHHHHHhcCCcccCCCeeEcCCCCccccCCCccchHHHHHHHHHHHHhcc
Confidence 211 000 112344444 44469999999999999999999863
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=190.21 Aligned_cols=247 Identities=18% Similarity=0.240 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+..+.+++|+++|+++++|| -|++|+.... +....+++..++...|
T Consensus 30 ~~L~~~~~~~~l~r~~i~~~~id-------~vi~G~~~~~------------------------g~~g~n~aR~~al~ag 78 (417)
T PRK06025 30 QHLAATVLKALAERNGLNTADVD-------DIIWSTSSQR------------------------GKQGGDLGRMAALDAG 78 (417)
T ss_pred HHHHHHHHHHHHHhcCCCHHHCC-------EEEEEcCCCc------------------------CcccCcHHHHHHHhCC
Confidence 45777888999999999998887 5999976310 1112446788888888
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH-H-----H-----HH-------------Hh
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL-G-----G-----FV-------------AC 369 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~-~-----~-----~~-------------~~ 369 (557)
| +-|.+||+..|+||+.||.+|++.|+.|++|++|+||+|+|.....+ . + .. .+
T Consensus 79 lp~~vp~~tvnr~C~Sgl~ai~~aa~~I~~G~~~~~laGG~EsmS~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M 158 (417)
T PRK06025 79 YDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMMSYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQSHQ 158 (417)
T ss_pred CCCCCCeeeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeeccCCCcccccccccCCCCcccccccCcccccccCCCCH
Confidence 8 46999999999999999999999999999999999999998633211 0 0 00 00
Q ss_pred hhhh-----------------------------------c----c----C---CCCCCCCC------------C-CcC--
Q 008700 370 RALS-----------------------------------Q----R----N---NDPTKASR------------P-WDI-- 388 (557)
Q Consensus 370 ~~Ls-----------------------------------~----~----~---~~p~~~~r------------p-fd~-- 388 (557)
+..+ . . + .+.|+..| | |+.
T Consensus 159 g~~ae~~a~~~~isRe~~D~~A~~Sh~rA~~A~~~G~f~~eIvPv~~~~~~~~~~~De~~R~~~t~e~la~L~p~F~~~~ 238 (417)
T PRK06025 159 GVCGDAIATMEGITREALDALGLESQRRAARAIKEGRFDKSLVPVYRDDGSVALDHEEFPRPQTTAEGLAALKPAFTAIA 238 (417)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcCeEeeEEcCCCCEEecCCCCCCCCCCHHHHcCCCCCccccc
Confidence 0000 0 0 0 01122122 2 431
Q ss_pred ----CCCCc-------------------------eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCC
Q 008700 389 ----NRDGF-------------------------VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439 (557)
Q Consensus 389 ----~~dG~-------------------------v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~ 439 (557)
..+|. .++|||+++||++++.|++.|.+++++|.|++...+... ..
T Consensus 239 ~~~~~~~g~~~~~~~~~~~~~~~~~~~vTagNss~~sDGAAAvVL~See~A~~lg~~p~a~I~g~~~a~~~p~-----~~ 313 (417)
T PRK06025 239 DYPLDDKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGLKPRARIVAMANMGDDPT-----LM 313 (417)
T ss_pred cccccCCccccccccccccccccccccccccccCCCCcceEEEEEecHHHHHHcCCCCcEEEEEEEEecCCch-----hh
Confidence 01343 358999999999999999999999999999988755322 12
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhc-CCCCcccccCcccccchhhhHHHHHHHHHHH
Q 008700 440 GVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFG-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518 (557)
Q Consensus 440 ~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~ 518 (557)
+.+...+++++|+++|++++|||++|+|...+.. ..+..+.++ ...++++++.+..+||+.|++|+..++.++.
T Consensus 314 ~~~p~~Ai~~aL~~AGl~~~DID~~ei~eaFa~~-----~l~~~~~lg~~~~~vN~~GG~ia~GHp~GaTGa~~v~~ll~ 388 (417)
T PRK06025 314 LNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAVV-----AEKFIRDLDLDRDKVNVNGGAIALGHPIGATGSILIGTVLD 388 (417)
T ss_pred cccHHHHHHHHHHHcCCCHHHCcEEEEchHHHHH-----HHHHHHHcCCChhhccccCCHHhcCCchhHHHHHHHHHHHH
Confidence 2344689999999999999999999998554431 122233444 2246788888889999999999999999999
Q ss_pred HHHcC
Q 008700 519 AIRTG 523 (557)
Q Consensus 519 ~l~~~ 523 (557)
+|+..
T Consensus 389 qL~~~ 393 (417)
T PRK06025 389 ELERR 393 (417)
T ss_pred HHHHh
Confidence 99763
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-19 Score=188.56 Aligned_cols=253 Identities=17% Similarity=0.152 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+|+++||+|||+++++|| ++++++.. +. +.+. ...+..++..+|
T Consensus 25 ~eL~~eAa~~Al~dAgl~~~dID-------~iv~~~~~-~~---------------------~~~~--~~~~~~va~~LG 73 (386)
T PRK08313 25 AGLVREAIDRALADAGLTWDDID-------AVVVGKAP-DF---------------------FEGV--MMPELFLADALG 73 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEeccc-cc---------------------cccc--cCchHHHHHhcC
Confidence 56899999999999999998887 78877521 00 0000 112357888999
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh---------------h-----HHHHH------H
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI---------------G-----LGGFV------A 368 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~---------------~-----~~~~~------~ 368 (557)
++. |.+.|+++|+++..++..|+++|++|++|.|||.|+|.+.+.. . ++.+. .
T Consensus 74 l~~~~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~~ 153 (386)
T PRK08313 74 ATGKPLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRR 153 (386)
T ss_pred CCCCceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHHH
Confidence 975 8899999999999999999999999999999999998653210 0 00110 0
Q ss_pred hhhh----hc--------cCCCCCCCC-CC-Cc--------------CCCCCceecCceEEEEEcchHHHHhcCCeeeEE
Q 008700 369 CRAL----SQ--------RNNDPTKAS-RP-WD--------------INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAE 420 (557)
Q Consensus 369 ~~~L----s~--------~~~~p~~~~-rp-fd--------------~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~ 420 (557)
.+.. +. ...+|.... +| ++ .--|...++|||+++||.+++.|++.+.++.++
T Consensus 154 ~G~~~e~la~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~~ 233 (386)
T PRK08313 154 SGAPEHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVAW 233 (386)
T ss_pred HCcCHHHHHHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCeE
Confidence 0000 00 001222111 11 22 123566789999999999999999887778889
Q ss_pred EEEEEEecCCCCCCC-CCCChHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCCccCcHHHHHHHHHH-----------h
Q 008700 421 FRGGSFTSDAYHMTE-PHPDGVGVILCIEKALAHSGVS--REDVNYINAHATSTPAGDIKEYQALIHC-----------F 486 (557)
Q Consensus 421 I~G~~~~~d~~~~~~-~~p~~~~~~~ai~~aL~~Agl~--~~dId~ve~hgtgt~~~D~~E~~Al~~~-----------~ 486 (557)
|+|++..++...... +.....+...+++++|+++|++ ++|||++|+|++++. .|...+... +
T Consensus 234 I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~Agi~~p~~Did~~el~d~F~~----~~~~~~e~lGl~~~G~~~~~~ 309 (386)
T PRK08313 234 IHGTAMRTEPLAFAGRDQVNPQAGRDAAAALWKAAGITDPRDEIDVAEIYVPFSW----FEPMWLENLGFAPEGEGWKLT 309 (386)
T ss_pred EEEEEEEecCcccccccccccHHHHHHHHHHHHHcCCCCChhhCCEEEeccCChH----HHHHHHHHcCCCCCCchHHHH
Confidence 999998776543321 2233456778999999999998 699999999999988 333333222 1
Q ss_pred cC-----CCCcccccCcccc-cchhhhHHHHHHHHHHHHHHcC
Q 008700 487 GQ-----NRGLRVNSTKSMI-GHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 487 ~~-----~~~~~v~s~K~~i-GH~~gAaG~~~li~~~~~l~~~ 523 (557)
.+ ...++|+...+.+ ||+.||+|+.+++++++||+..
T Consensus 310 ~~G~~~~~G~~pvN~~GG~l~g~p~gatG~~~~~e~~~qlrG~ 352 (386)
T PRK08313 310 EAGETAIGGRLPVNPSGGVLSSNPIGASGMIRFAEAALQVMGK 352 (386)
T ss_pred HCCCcCCCCCccccCCCcccccCCCcHHHHHHHHHHHHHhccc
Confidence 00 0134554444444 9999999999999999999864
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-19 Score=187.74 Aligned_cols=223 Identities=18% Similarity=0.194 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....|+.+|+++||+++|++++++| .|++++.... ......+..++..
T Consensus 94 ~~~~la~~Aa~~aL~~agl~~~~Id-------~li~~~~~~~-------------------------~~~p~~a~~v~~~ 141 (372)
T PRK07515 94 IQAEMGVAAARQALARAGRTAEDID-------AVIVACSNMQ-------------------------RAYPAMAIEIQQA 141 (372)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECCCCC-------------------------CCCcHHHHHHHHh
Confidence 4467999999999999999998776 5777764211 1112245678899
Q ss_pred hCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 314 lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
+|+++++++++.+|+|++.||..|.++|++|.+|.|||+|+|.+... . -|+....++
T Consensus 142 Lgl~~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~-----------~------------~~~d~~~~~ 198 (372)
T PRK07515 142 LGIEGFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICSGH-----------L------------NFRDRDSHF 198 (372)
T ss_pred cCCCCcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeeccccc-----------c------------cccCCCCCE
Confidence 99999999999999999999999999999999999999999973211 0 022223579
Q ss_pred eecCceEEEEEcchHHHHhcC-CeeeEEEEEE------------EEecCCCCCCCCCC----ChH--------HHHHHHH
Q 008700 394 VMGEGAGVLLLEELEHAKKRG-AKIYAEFRGG------------SFTSDAYHMTEPHP----DGV--------GVILCIE 448 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G-~~i~a~I~G~------------~~~~d~~~~~~~~p----~~~--------~~~~ai~ 448 (557)
++||||+|+||++.+.+.+++ ..+++..... ....+..+...+.. ++. .+.++|+
T Consensus 199 lfGDgAaA~vL~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 278 (372)
T PRK07515 199 IFGDVATAVIVERADTATSAGGFEILGTRLFTQFSNNIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIV 278 (372)
T ss_pred EecCccEEEEEeeccccccCCCceEEEEEeecccccceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHH
Confidence 999999999999876553222 2455443211 00001111111111 222 2568999
Q ss_pred HHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHH
Q 008700 449 KALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIA 515 (557)
Q Consensus 449 ~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~ 515 (557)
++|+++|++++|||||.+|.+++.+.|.+ ++++|+... .-.....-..+||+.+|+=.+.|..
T Consensus 279 ~~L~~~gl~~~dId~~~~Hq~~~~~~d~~----~~~llg~~~~~~~~~~~~~~~GNt~sasi~~~L~~ 342 (372)
T PRK07515 279 EHLAENGLTPADVKRFWLHQANINMNQLI----GKKVLGRDATPEEAPVILDEYANTSSAGSIIAFHK 342 (372)
T ss_pred HHHHHcCCCHHHCCEEEECCCCHHHHHHH----HHHhccCCCChhhceEeHHhcCCchhhHHHHHHHH
Confidence 99999999999999999999999988765 334455221 1111123456899988876555544
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-19 Score=188.71 Aligned_cols=252 Identities=19% Similarity=0.199 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|+|+++++|| +|++|..... +.-.+.....++..+|
T Consensus 38 ~eL~~eA~~~Al~dagl~~~dID-------~vv~~~~~~~------------------------~~g~~~~~~~~~~~lG 86 (430)
T PRK06365 38 RERVKKAFDYAMNDAGLTLADID-------GSVASYFSDH------------------------FQRQLLAGIMVQDYLG 86 (430)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcC-------EEEEeccccc------------------------ccccchhhHHHHHhcC
Confidence 57899999999999999998887 6776642110 0011222234678899
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH-------------------------HHHHHh
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL-------------------------GGFVAC 369 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~-------------------------~~~~~~ 369 (557)
+.. |.++|+++|+|+..||..|++.|++|++|+|||+|+|.+...... .++...
T Consensus 87 l~~~~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~al~a~ 166 (430)
T PRK06365 87 LVPKPSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSHVNTWKGNEFIALASDTNFDYPLGGFYTGYYAMMAV 166 (430)
T ss_pred CCCCceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecccccchhhhhhhcccccccccccccCccHHHHHHHHH
Confidence 975 899999999999999999999999999999999999975432100 000000
Q ss_pred hhhhcc------------------CCCCCCC-CCCCc--------------CCCCCceecCceEEEEEcchHHHHhcCCe
Q 008700 370 RALSQR------------------NNDPTKA-SRPWD--------------INRDGFVMGEGAGVLLLEELEHAKKRGAK 416 (557)
Q Consensus 370 ~~Ls~~------------------~~~p~~~-~rpfd--------------~~~dG~v~gEGAaalvLe~~~~A~~~G~~ 416 (557)
+.+.+. ..+|... ..|.+ ...|...++|||+|+||.+++.|++.+.+
T Consensus 167 ry~~~yG~t~e~la~vav~~~~~A~~NP~A~~~~~~t~e~v~~s~~i~~Plt~~d~~~~sDGAaAvvl~See~A~~l~~~ 246 (430)
T PRK06365 167 RHMYEFGTTVEQLAKVSVKNHGNAIHNPFAQSPMKITVEDVRKSPMVSYPLTRLDVCAMSDGAACAILASEDKAFEITDK 246 (430)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhhCcHhhcCCCCCHHHHhcCCccccCcchhhcCCcCCceEEEEEecHHHHHhcCCC
Confidence 000000 0011100 01111 01245557999999999999999987766
Q ss_pred eeEEEEEEEEecCCCCCCC----------------------C-CCChHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCC
Q 008700 417 IYAEFRGGSFTSDAYHMTE----------------------P-HPDGVGVILCIEKALAHSGVS--REDVNYINAHATST 471 (557)
Q Consensus 417 i~a~I~G~~~~~d~~~~~~----------------------~-~p~~~~~~~ai~~aL~~Agl~--~~dId~ve~hgtgt 471 (557)
+ ..|++++..+++..... + .........+++++|+++|++ ++|||++|+|++++
T Consensus 247 p-v~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~AGl~~~~~DiD~~Ei~D~Fa 325 (430)
T PRK06365 247 P-VLIKAIGTGSDTLRLADRPFGEVPLLPNESPDDYKDLRYPGVHSFRAGRMAAKEAYEMAGITDPLNDLDLIELHDAYT 325 (430)
T ss_pred C-eEEEEEEEeccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCCCHHHCCEEEeecCCc
Confidence 5 44666665544322111 0 012234458999999999997 79999999999988
Q ss_pred ccCcHHHHHHHHHH-hcC---------------CCCcccccC--cccccchhhhHHHHHHHHHHHHHHcC
Q 008700 472 PAGDIKEYQALIHC-FGQ---------------NRGLRVNST--KSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 472 ~~~D~~E~~Al~~~-~~~---------------~~~~~v~s~--K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
. .|...++.. |.. ...++|+.. --..||+.||+|+.+++.+++||+..
T Consensus 326 ~----~~l~~lE~lGl~~~Ge~~~~~~~G~~~~~G~~piNt~GG~la~Ghp~GatG~~~~~e~~~QLrG~ 391 (430)
T PRK06365 326 S----SEIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVNPSGGLLAAGHAVGATGIMQAVFMFWQLQGR 391 (430)
T ss_pred H----HHHHHHHHcCCCCCCchHHHHHCCCcCCCCCccccCCCchhcCCCcccHHHHHHHHHHHHHHhcc
Confidence 7 333333221 100 012344444 44469999999999999999999975
|
|
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-19 Score=185.00 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+|+++||+|+|+++++|| ++++++..... .+ ....+..++..+|
T Consensus 30 ~~L~~~A~~~Al~dagl~~~dID-------~~i~~~~~~~~----------------------~~--~~~~a~~l~~~lG 78 (392)
T PRK06065 30 QELAWEAASKALDEAGLELKDID-------CVVIGSAPDAF----------------------DG--VHMKGEYLSHGSG 78 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEeccCCcc----------------------cc--cccHHHHHHHHcC
Confidence 56899999999999999999888 78887521000 00 1224456888888
Q ss_pred CC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccch-------------------hh-----HHHHHHhh
Q 008700 316 WM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP-------------------IG-----LGGFVACR 370 (557)
Q Consensus 316 l~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p-------------------~~-----~~~~~~~~ 370 (557)
+. .|.+.|+++|+|+..+|..|+++|++|.+|.|||+|+|.+... .. ++++...+
T Consensus 79 ~~~~~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~Al~a~r 158 (392)
T PRK06065 79 GIRKPVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKMSPARPHPQAVFRYIWDPILEKPLNPNLIWIFAMEMHR 158 (392)
T ss_pred CCCCCeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecccccccchhHHHhhhccchhccCCCccHHHHHHHHHHH
Confidence 86 5999999999999999999999999999999999999874211 00 01111111
Q ss_pred hhhcc------------------CCCCCCCC-CCCcC--------------CCCCceecCceEEEEEcchHHHHhcCCee
Q 008700 371 ALSQR------------------NNDPTKAS-RPWDI--------------NRDGFVMGEGAGVLLLEELEHAKKRGAKI 417 (557)
Q Consensus 371 ~Ls~~------------------~~~p~~~~-rpfd~--------------~~dG~v~gEGAaalvLe~~~~A~~~G~~i 417 (557)
.+.+. ..+|.... +|.+. --|...++|||+++||.+++.|++.+.++
T Consensus 159 ym~~yG~~~e~lA~vav~~~~~A~~NP~A~~r~~lt~e~vl~s~~ia~Pl~l~d~~~~~DGAaA~vl~s~e~A~~l~~~~ 238 (392)
T PRK06065 159 YMATYGIKKEEIALVSVKNKRNALNNPYAQLGSKITVEDVLKSEVLVWPVQLLDVSPVSDGAAAIVLASEDLARRYTDTP 238 (392)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhhccCchhhhcCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEeCHHHHHhcCCCC
Confidence 11100 01121110 11111 12556789999999999999999887665
Q ss_pred eEEEEEEEEecCCCCCCCC-CCChHHHHHHHHHHHHHcCCCC--CCccEEEEcCCCCccCcHHHHHHHH--------HHh
Q 008700 418 YAEFRGGSFTSDAYHMTEP-HPDGVGVILCIEKALAHSGVSR--EDVNYINAHATSTPAGDIKEYQALI--------HCF 486 (557)
Q Consensus 418 ~a~I~G~~~~~d~~~~~~~-~p~~~~~~~ai~~aL~~Agl~~--~dId~ve~hgtgt~~~D~~E~~Al~--------~~~ 486 (557)
..|+|++...+....... .........+++++|+++|+++ +|||++|+|++++.. ...+.+++. +.+
T Consensus 239 -v~I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~aGi~~p~~diD~~ei~D~Fs~~-~l~~~E~lG~~~~G~~~~~~ 316 (392)
T PRK06065 239 -VWVEGVGWTLDNTEWPNRDLAYPRYVEFAARMAYKMAGIERPRKEIDVAEPYDPFDYK-ELHHLEGLQLAKRGEAPKLL 316 (392)
T ss_pred -EEEEEEEEecCccccccccccccHHHHHHHHHHHHHcCCCCchhhCcEEEecCCChHH-HHHHHHHcCCCCCCcHHHHH
Confidence 458998887655322211 1223445689999999999985 999999999998872 223333331 001
Q ss_pred c-------CCCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 487 G-------QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 487 ~-------~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
. .+.+++.++.--..||+.+|+|+.+++++++||+..
T Consensus 317 ~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~ 360 (392)
T PRK06065 317 KEGVFDIDGDIPSSPSGGLLGVGNPIAAAGLMKVISIYWQLKGT 360 (392)
T ss_pred HCCCccCCCCeeecCCCccccCCCCccHHHHHHHHHHHHHHhcc
Confidence 0 111333444444469999999999999999999864
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=190.58 Aligned_cols=253 Identities=19% Similarity=0.223 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHH-HHHH
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSA-MLAM 312 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~-~ia~ 312 (557)
....|+.+++++||+|+|+++++|| .|++|+...... + ..++. .+..
T Consensus 22 ~~~el~~~a~~~Al~~agl~p~dID-------~vi~g~~~~~~~----------------------g---~~~~~~~~~~ 69 (393)
T cd00826 22 LAHEAGAKAIAAALEPAGVAAGAVE-------EACLGQVLGAGE----------------------G---QNCAQQAAMH 69 (393)
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEEccCCcc----------------------c---CcHHHHHHHH
Confidence 3467889999999999999998888 688987642210 0 11122 2455
Q ss_pred hhCCCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-------HH----HHH-------------
Q 008700 313 DLGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-------LG----GFV------------- 367 (557)
Q Consensus 313 ~lgl~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-------~~----~~~------------- 367 (557)
.+|+.+ |.++|+++|+|++.||..|+++|++|++|++||+|+|.+..... +. .+.
T Consensus 70 ~lg~~~~p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~s~ 149 (393)
T cd00826 70 AGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSAENNAKEKHIDVLINKYGMRACPDAFALAGQ 149 (393)
T ss_pred cCCCCCCcEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccchhHHHHHHhCChhhccHHHHHHH
Confidence 567755 99999999999999999999999999999999999998643110 00 000
Q ss_pred -Hhhhhhc-------------cC--------CCCCCCC------------CCCc------CCCCCceecCceEEEEEcch
Q 008700 368 -ACRALSQ-------------RN--------NDPTKAS------------RPWD------INRDGFVMGEGAGVLLLEEL 407 (557)
Q Consensus 368 -~~~~Ls~-------------~~--------~~p~~~~------------rpfd------~~~dG~v~gEGAaalvLe~~ 407 (557)
....+.+ .+ .+|.... +|.. ...|...++|||+++||.++
T Consensus 150 ~~~~~~~~~G~~~e~~a~v~~~~~~~~~~a~~np~a~~~~~~t~e~~~~~~~i~~~~~pl~~~~~~~~~DGAAA~vl~S~ 229 (393)
T cd00826 150 AGAEAAEKDGRFKDEFAKFGVKGRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLNDGAAAAILMSE 229 (393)
T ss_pred HHHHHHHHcCCCHHHEEEEEEecCCCCEEEecCCCCCCCCCCCHHHHhcCCCccCCCCCEechhcCCcCCCeEEEEEecH
Confidence 0000000 00 0121111 1111 11244457899999999999
Q ss_pred HHHHhcCC-eeeEEEEEEEEecCCCC-CCCCC----CChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHH
Q 008700 408 EHAKKRGA-KIYAEFRGGSFTSDAYH-MTEPH----PDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481 (557)
Q Consensus 408 ~~A~~~G~-~i~a~I~G~~~~~d~~~-~~~~~----p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~A 481 (557)
+.|++.+. +-..+|.+.+...+... ...|. ....+...+++++|+++||+++|||++|+|..++. .|+..
T Consensus 230 ~~a~~l~l~~~~v~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~al~~Agi~~~DID~~Ei~d~Fa~----~~l~~ 305 (393)
T cd00826 230 AEAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAA----NACAT 305 (393)
T ss_pred HHHHHcCCcccccccceEEEEEeeeccccCccccccccceeHHHHHHHHHHHcCCCHHHcCeeehhhhhHH----HHHHH
Confidence 99998774 22244555544333221 11222 23345678999999999999999999999988777 34444
Q ss_pred HHHH-hcC-----------------CCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 482 LIHC-FGQ-----------------NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 482 l~~~-~~~-----------------~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
++.. |.. ..+++.++.--..||+.||+|+.+++++++||+.
T Consensus 306 ~e~lgl~~~g~~~~~~~~g~~~~~G~~pvN~~GG~la~GhP~gAtG~~~~~e~~~qL~g 364 (393)
T cd00826 306 NEALGLCPEGQGGALVDRGDNTYGGKSIINPNGGAIAIGHPIGASGAAICAELCFELKG 364 (393)
T ss_pred HHHhCCCcccchhhhhhcCccccCCcceECCCCchhhcCCCccccHHHHHHHHHHHHhh
Confidence 4332 111 1234444444456999999999999999999985
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=186.19 Aligned_cols=250 Identities=19% Similarity=0.162 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|||+++++|| +++.+... ... ....++..+|
T Consensus 26 ~~L~~eA~~~Al~DAgl~~~dID-------~~~~~~~~-------------------------~~~----~~~~~~~~lG 69 (388)
T PRK08142 26 AQLHAEVAKGALADAGLSLADVD-------GYFCAGDA-------------------------PGL----GPASMVDYLG 69 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEcCCC-------------------------CCc----cHHHHHHhCC
Confidence 56899999999999999998777 45432110 000 0134778899
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh---h------------------------HHHHH
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI---G------------------------LGGFV 367 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~---~------------------------~~~~~ 367 (557)
+++ |...++++|+|+..+|..|+++|++|.+|+|||+|+|.+.... . +..+.
T Consensus 70 l~~~~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al~ 149 (388)
T PRK08142 70 LKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAMC 149 (388)
T ss_pred CCCeeeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHHH
Confidence 975 7888999999999999999999999999999999988643110 0 00000
Q ss_pred Hhhhhhcc------------------CCCCCCC-CCCCcC--------------CCCCceecCceEEEEEcchHHHHhcC
Q 008700 368 ACRALSQR------------------NNDPTKA-SRPWDI--------------NRDGFVMGEGAGVLLLEELEHAKKRG 414 (557)
Q Consensus 368 ~~~~Ls~~------------------~~~p~~~-~rpfd~--------------~~dG~v~gEGAaalvLe~~~~A~~~G 414 (557)
..+.+.+. ..+|... .+|++. .-|...++|||+++||.+++.|++.+
T Consensus 150 a~~ym~~yG~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~l~d~~~~~DGAaA~vl~s~~~A~~l~ 229 (388)
T PRK08142 150 AMRHMHEYGTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALVVVRPEIARSLK 229 (388)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCchhhccCcccCceEEEEEecHHHHhhcC
Confidence 00000000 0122111 112221 12566789999999999999999876
Q ss_pred CeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHH--------Hh
Q 008700 415 AKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIH--------CF 486 (557)
Q Consensus 415 ~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~--------~~ 486 (557)
. +.++|+|++..++......++........+++++|+++|++++|||++|+|++++.. ..+.+++|.- .+
T Consensus 230 ~-~~v~I~g~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGi~~~did~~elyD~Fs~~-~~~~~E~lGl~~~Ge~~~~v 307 (388)
T PRK08142 230 R-PLVKVLGAGEAIKGQMGGKVDLTYSGAAWSGPAAFAEAGVTPADIKYASIYDSFTIT-VLMQLEDLGFCKKGEGGKFV 307 (388)
T ss_pred C-CCEEEEEEEEecCCccccCcccccHHHHHHHHHHHHHcCCCHHHCCEEEEeccchHH-HHHHHHHcCCCCCCchHHHH
Confidence 4 558899999887765434444444556789999999999999999999999999883 3333344310 01
Q ss_pred cC------CCCcccccCccc--ccchhhhHHHHHHHHHHHHHHcC
Q 008700 487 GQ------NRGLRVNSTKSM--IGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 487 ~~------~~~~~v~s~K~~--iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.+ ...+||+..-+. .||+.+|+|+.+++++++||+..
T Consensus 308 ~~g~~~~~~G~lPvN~sGG~l~~G~p~gatG~~~~~E~~~QLrG~ 352 (388)
T PRK08142 308 ADGNLISGVGKLPFNTDGGGLCNNHPANRGGMTKVIEAVRQLRGE 352 (388)
T ss_pred HCCCcccCCCCccccCCChhhcCCCcCcccHHHHHHHHHHHHcCC
Confidence 01 023555444333 48999999999999999999853
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=184.69 Aligned_cols=252 Identities=18% Similarity=0.211 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.++++++|+|+|+++++|| .|++|+..... ...+++..++...+
T Consensus 32 ~eL~~~a~~~al~~agl~~~~Id-------~vv~G~~~~~~-------------------------~~~~~~r~~~l~~g 79 (427)
T PRK09268 32 QDMLTAALDGLVDRFGLQGERLG-------EVVAGAVLKHS-------------------------RDFNLTRECVLGSA 79 (427)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecccCC-------------------------ccccHHHHHHHHcC
Confidence 56899999999999999998888 69999753210 00113444444544
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH-H----------------------------
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL-G---------------------------- 364 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~-~---------------------------- 364 (557)
+ ..|.++|+++|+||+.|+..|+++|++|.+|++||||+|.+...... .
T Consensus 80 l~~~~p~~~V~~~CaSG~~ai~~A~~~I~sG~~d~vlvgG~E~ms~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (427)
T PRK09268 80 LSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTSDAPIAVNEGLRKILLELNRAKTTGDRLKALGKLRP 159 (427)
T ss_pred CCCCCceeeeechhhHHHHHHHHHHHHHHCCCCCEEEEeeEEccCCCcccccccccccccccccccccCccccccccccc
Confidence 4 68999999999999999999999999999999999999987532100 0
Q ss_pred --------H----H--HHhhhhhc-------------------------c---------CCCCC------CCC-------
Q 008700 365 --------G----F--VACRALSQ-------------------------R---------NNDPT------KAS------- 383 (557)
Q Consensus 365 --------~----~--~~~~~Ls~-------------------------~---------~~~p~------~~~------- 383 (557)
. + ..++.+.+ . .-.|. ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~m~~~ae~~a~~ygisre~~d~~Avksh~~A~~A~~~g~~~~einP~~~~~~D~~~r~~~t~e 239 (427)
T PRK09268 160 KHLAPEIPRNGEPRTGLSMGEHAAITAKEWGISREAQDELAAASHQNLAAAYDRGFFDDLITPFLGLTRDNNLRPDSSLE 239 (427)
T ss_pred ccccccCccccccccCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccCccCcccCCCCCCCCCHH
Confidence 0 0 00110100 0 00122 111
Q ss_pred -----CC-CcC-------CCCCceecCceEEEEEcchHHHHhcCCeeeEEE-EEEEEecCCCCCCCCCCChHHHHHHHHH
Q 008700 384 -----RP-WDI-------NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEF-RGGSFTSDAYHMTEPHPDGVGVILCIEK 449 (557)
Q Consensus 384 -----rp-fd~-------~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I-~G~~~~~d~~~~~~~~p~~~~~~~ai~~ 449 (557)
+| |+. -.|...++|||+++||.+++.|++.+.++.++| .+....++.... +.........++++
T Consensus 240 ~l~~~~~v~~p~~~g~lt~~n~~~~~DGAaAvvl~s~~~A~~l~~~p~~~i~~~~~~~~~~~~~--~~~~~~~~~~a~~~ 317 (427)
T PRK09268 240 KLAKLKPVFGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVLAYLVDAETAAVDFVHG--KEGLLMAPAYAVPR 317 (427)
T ss_pred HHhCCCcccccCCCCceeccccCCCCCceEEEEEecHHHHHHcCCCceEEEEEEEEEcCCcccc--cchhhccHHHHHHH
Confidence 11 222 123445799999999999999999888887676 455555553211 11112345579999
Q ss_pred HHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHH------------hcC--CCCcccccCcccccchhhhHHHHHHHH
Q 008700 450 ALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHC------------FGQ--NRGLRVNSTKSMIGHLLGAAGAVEAIA 515 (557)
Q Consensus 450 aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~------------~~~--~~~~~v~s~K~~iGH~~gAaG~~~li~ 515 (557)
+|+++|++++|||++|+|..++.. ...|+..+... .|. ..++++++.--.+|||.||+|+.++++
T Consensus 318 a~~~AGl~~~Did~~Ei~d~Fa~~-~l~~l~~~e~lG~~~~g~g~~~~~G~~~~~pvN~~GG~la~GhP~gATG~~~v~e 396 (427)
T PRK09268 318 LLARNGLTLQDFDFYEIHEAFASQ-VLATLKAWEDEEYCRERLGLDAPLGSIDRSKLNVNGSSLAAGHPFAATGGRIVAT 396 (427)
T ss_pred HHHHcCCCHHHCCEEEeccccHHH-HHHHHHHhhhccccccccccccccCcCCCcccCCCcCHHhcCCCcccchHHHHHH
Confidence 999999999999999999998872 12233222210 011 123333343444599999999999999
Q ss_pred HHHHHHc
Q 008700 516 VVQAIRT 522 (557)
Q Consensus 516 ~~~~l~~ 522 (557)
+++||+.
T Consensus 397 ~~~QL~~ 403 (427)
T PRK09268 397 LAKLLAE 403 (427)
T ss_pred HHHHHHh
Confidence 9999975
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=181.67 Aligned_cols=240 Identities=18% Similarity=0.233 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+..+.+++++ |++ ++|| .|++|+..+.. ...+..++...|
T Consensus 26 ~~L~~~a~~~~~~--gi~-~~Id-------~vi~G~~~~~~---------------------------~~~~r~~~~~~G 68 (361)
T PRK06690 26 QQLAAPLLTFLSK--GME-REID-------DVILGNVVGPG---------------------------GNVARLSALEAG 68 (361)
T ss_pred HHHHHHHHHHHHc--cch-hhcC-------EEEEEecCCCc---------------------------chHHHHHHHHcC
Confidence 5677888888744 886 6677 69999753210 223445778888
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-----HH--HHH--Hhhhh------------
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-----LG--GFV--ACRAL------------ 372 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-----~~--~~~--~~~~L------------ 372 (557)
+. -|.++|+++|+||+.||..|+++|++|++|++||||+|.+..... +. .+. .++..
T Consensus 69 l~~~~p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ygitr 148 (361)
T PRK06690 69 LGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPDMGVAAEYVAERYNITR 148 (361)
T ss_pred CCCCCCceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCCCcccccccCcccccCccHHHHHHHHHHHhCCCH
Confidence 85 499999999999999999999999999999999999998754210 00 000 00000
Q ss_pred ---------hc-----cCCCCC-------------CCC-------------CC-CcC-----CCCCceecCceEEEEEcc
Q 008700 373 ---------SQ-----RNNDPT-------------KAS-------------RP-WDI-----NRDGFVMGEGAGVLLLEE 406 (557)
Q Consensus 373 ---------s~-----~~~~p~-------------~~~-------------rp-fd~-----~~dG~v~gEGAaalvLe~ 406 (557)
+. ...+|. ... +| |+. ..|...++|||+++||++
T Consensus 149 e~~d~~A~~s~k~a~~a~~n~~~~~ei~~v~~~~d~~~r~~~~~e~ll~~l~p~~~~~g~lt~~~~~~~~DGAaAvvl~s 228 (361)
T PRK06690 149 EMQDEYACLSYKRTLQALEKGYIHEEILSFNGLLDESIKKEMNYERIIKRTKPAFLHNGTVTAGNSCGVNDGACAVLVME 228 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCceecccCccccccCCCCCHHHHhhcCCCcccCCCceeccccCCCCCCeEEEEEec
Confidence 00 000000 001 12 221 123344699999999999
Q ss_pred hHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHh
Q 008700 407 LEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCF 486 (557)
Q Consensus 407 ~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~ 486 (557)
++.|++.|.++.++|.+++..... +.....+...+++++|+++|++++|||++|+|...+.. +...++ .+
T Consensus 229 ~e~A~~lg~~p~~~i~~~~~~~~~-----~~~~~~~~~~a~~~al~~Agl~~~Did~~ei~eafa~~----~~~~~e-~l 298 (361)
T PRK06690 229 EGQARKLGYKPVLRFVRSAVVGVD-----PNLPGTGPIFAVNKLLNEMNMKVEDIDYFEINEAFASK----VVACAK-EL 298 (361)
T ss_pred HHHHHHcCCCceEEEEEEEEeccC-----cccchhHHHHHHHHHHHHcCCCHHHcCEeeecchhHHH----HHHHHH-hc
Confidence 999999998888889998865422 12224567889999999999999999999999776662 222222 23
Q ss_pred c-CCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 487 G-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 487 ~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+ ...++++++.+..+||+.|++|+.+++.++.++++
T Consensus 299 gl~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~ql~~ 335 (361)
T PRK06690 299 QIPYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKR 335 (361)
T ss_pred CCCchhcccCCcHHhccCchhhhHHHHHHHHHHHHHH
Confidence 3 12356677777788999999999999999999976
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-20 Score=178.76 Aligned_cols=246 Identities=22% Similarity=0.281 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
.++|.-.+++.||+++.+++++.+ -||+|+.. .......++++.+.--
T Consensus 30 A~~Lgsvaikaalera~v~~~~v~-------eVi~GnVl-------------------------~AnlGQapaRQaalgA 77 (396)
T KOG1390|consen 30 ATELGSVAIKAALERAVVPPSDVA-------EVIFGNVL-------------------------SANLGQAPARQAALGA 77 (396)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHhh-------hhhhcccc-------------------------ccccCcchHHHHHhhc
Confidence 567889999999999999887555 37887642 2345566788888887
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHH------------------------HHHH
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG------------------------GFVA 368 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~------------------------~~~~ 368 (557)
|| .-|+.||+--|+||+.|+.+|++.|+.|..|++++||.|+|...+.+. .|+.
T Consensus 78 Glp~sv~~tTvNkvCaSgmKAv~laaQsI~~G~~divVaGGmEsMS~vP~~~~~R~g~~~G~~~l~Dgi~~DGL~D~y~~ 157 (396)
T KOG1390|consen 78 GLPYSVPATTVNKVCASGMKAVILAAQSIQTGHADIVVAGGMESMSNVPYLYVARGGVKYGGVQLVDGIVKDGLTDAYDK 157 (396)
T ss_pred CCCcceeeEeehhhhhhhHHHHHHHHHHHhcCCccEEEecccchhccCcchhhhccCcCcCCeeeeechhhcchHHHhcc
Confidence 77 459999999999999999999999999999999999999987544110 0000
Q ss_pred h-------------------------------------hhhhc----------cCC---CCCC------------CCCCC
Q 008700 369 C-------------------------------------RALSQ----------RNN---DPTK------------ASRPW 386 (557)
Q Consensus 369 ~-------------------------------------~~Ls~----------~~~---~p~~------------~~rpf 386 (557)
. +.+.. ++. +.|+ ..+|.
T Consensus 158 ~~MG~~aE~~a~~~~ItRe~QD~yAI~Sy~r~~~Aq~~g~f~~EIVPV~V~~~rg~~~v~~DEe~~k~~~~~~~~~l~~v 237 (396)
T KOG1390|consen 158 CHMGICAENTAKKYQITREEQDAYAIESYKRSENAQKAGKFDKEIVPVEVKTKRGETVVKKDEEPKKGSNIEKLSKLRPV 237 (396)
T ss_pred CCcchhHhhhHHHhCCcHhhhhhHHHHhHHHHHHHHhcCCCCCceeeEEEecCCCcEEeccchhhhcccchhhhccccce
Confidence 0 00000 000 0000 01111
Q ss_pred cCCCCCc-------eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 008700 387 DINRDGF-------VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459 (557)
Q Consensus 387 d~~~dG~-------v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~ 459 (557)
-...+|. .+.|||+|+||.+.+.+.+.|.+++|+|.+|+..... |..-..+...++.++|+++|+..+
T Consensus 238 F~~~ggTVTaaNAS~lnDGAAAvvL~s~e~~~~~glkPLArIv~~~dAa~~-----P~df~iaP~laipk~lk~aG~~~s 312 (396)
T KOG1390|consen 238 FKEDGGTVTAANASTLNDGAAAVVLMSGEAAKELGLKPLARIVAWGDAATE-----PIDFTIAPALAIPKALKKAGLEQS 312 (396)
T ss_pred eecCCCeeccccccccCccceeeEEechhhHhHcCCchHHHHhhhhhhccC-----hhhcccchHHHHHHHHHHcCcchh
Confidence 1122232 3679999999999999999999999999999865321 111123446889999999999999
Q ss_pred CccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 460 DVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 460 dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
||||+|.+-.+.. -..|..+.++-+ ..+++....-.+|||+|+||+.-++.++..|++
T Consensus 313 dVd~~EiNEAFs~-----v~lA~iK~LgldP~kVNv~GGAValGHPlG~SGaRi~~tL~~~L~~ 371 (396)
T KOG1390|consen 313 DVDYWEINEAFSV-----VVLANIKKLGLDPSKVNVHGGAVALGHPLGMSGARILVTLLHTLEQ 371 (396)
T ss_pred hhhHHhhhhhhhH-----HHHHHHHHhCCCHhhccCCCceeecCCCcCCcchhHHHHHHHHHHh
Confidence 9999997532221 112223334422 357788888889999999999999999999988
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=178.64 Aligned_cols=251 Identities=18% Similarity=0.203 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHCC-CCh-hhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 236 MLYLLTAGKKALADGG-ITE-DVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 236 ~rl~l~aa~eALedAG-l~~-~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
..|+.+++++||+||| +++ ++|| ++++++. ... .. .......++..
T Consensus 26 ~eL~~eA~~~Al~DAG~l~~~~dId-------~~~~~~~-~~~----------------------~~--~~~~~~~~~~~ 73 (385)
T PRK06066 26 REMMFEAASRAYKDAGNINPRRDVD-------SFISCQE-DFW----------------------EG--IAIADEFAPDQ 73 (385)
T ss_pred HHHHHHHHHHHHHhcCCCCChhcCC-------EEEEecC-ccc----------------------Cc--ccccchhHHHH
Confidence 5699999999999999 986 6777 6777531 000 00 00111235567
Q ss_pred hCCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc------------------h------hhHHHHHH
Q 008700 314 LGWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI------------------P------IGLGGFVA 368 (557)
Q Consensus 314 lgl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~------------------p------~~~~~~~~ 368 (557)
+|+. .|.+.| |+|+..++..|+++|++|.+|+|||.|+|.+.. | ..+.++..
T Consensus 74 lg~~~~~~~~v---~~sg~~a~~~A~~aV~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~p~~~~al~a 150 (385)
T PRK06066 74 IGGAMRPTMTV---AGDGLQGLAHAVMHINSGLANVVVVEAHSKPSDILTFSDVVKFAMDPIYVRPIGPPNPHFIAGLDA 150 (385)
T ss_pred cccCCCCeEEE---eCcHHHHHHHHHHHHHcCCCCEEEEEEEeeccCccchhhhhhcccCcceecccCCCcHHHHHHHHH
Confidence 8874 588777 889999999999999999999999999986432 0 00111111
Q ss_pred hhhhhcc------------------CCCCCCCC-CCCcC--------------CCCCceecCceEEEEEcchHHHHhcCC
Q 008700 369 CRALSQR------------------NNDPTKAS-RPWDI--------------NRDGFVMGEGAGVLLLEELEHAKKRGA 415 (557)
Q Consensus 369 ~~~Ls~~------------------~~~p~~~~-rpfd~--------------~~dG~v~gEGAaalvLe~~~~A~~~G~ 415 (557)
.+.+.+. ..+|.... +|.+. ..|...++|||+++||.+++.|++.+.
T Consensus 151 ~rym~~yG~t~E~lA~Vavk~r~nA~~NP~A~~r~~~t~edvl~S~~ia~Pl~~~d~~~~~DGAaAvvl~s~~~a~~l~~ 230 (385)
T PRK06066 151 VKFMSRKGITREDLALVVEKNKKAGLSNPRASYASNISLEDVLSSEYVVYPLTELDIAPFVDGAIVVVLASEEVAKKLTD 230 (385)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCchhhccCCCCCceEEEEEeCHHHHHhcCC
Confidence 1111110 01121111 11111 136667899999999999999998887
Q ss_pred eeeEEEEEEEEecCCCCCCCCCC-ChHHHHHHHHHHHHHcCCC--CCCccEEEEcCCCCccCcHHHHHHHHH--------
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHP-DGVGVILCIEKALAHSGVS--REDVNYINAHATSTPAGDIKEYQALIH-------- 484 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p-~~~~~~~ai~~aL~~Agl~--~~dId~ve~hgtgt~~~D~~E~~Al~~-------- 484 (557)
++. +|+|++..++......... .......+.+++|+++|++ ++|||++|+|+.++.. ..+..+.|.-
T Consensus 231 ~pv-~I~g~g~~~~~~~~~~~~~~~~~~~~~Aa~~a~~~AGi~~p~~DiD~~ei~D~Ft~~-~l~~~e~lG~~~~Ge~~~ 308 (385)
T PRK06066 231 DPV-WIKGIGWSTESSNLETAELGKANYMRIAADMAYKMAGIESPRKEVDAAEVDDRYSYK-ELQHIEALRLSEEPEKDS 308 (385)
T ss_pred CCE-EEEEEEEecCCcccccccccccHHHHHHHHHHHHHcCCCCCHHHCcEEEEecCChHH-HHHHHHHcCCCCCCchHH
Confidence 664 8999888765332221111 2333447999999999998 7999999999998883 2333333310
Q ss_pred HhcC-----CCCcccc--cCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 485 CFGQ-----NRGLRVN--STKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 485 ~~~~-----~~~~~v~--s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.+.+ ...+||+ +.--..||+.||+|+.+++++++||+..
T Consensus 309 ~v~~G~~~~~G~~PvN~~GG~la~Ghp~gatG~~~v~e~~~QL~g~ 354 (385)
T PRK06066 309 LLREGNFDPQGELPVNPSGGHLAKGVPLEASGLSLLLDAVEYLRGE 354 (385)
T ss_pred HHHCCCCCCCCCccccCCCchhcCCCccchhHHHHHHHHHHHHccc
Confidence 0100 0123444 4444459999999999999999999864
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=168.11 Aligned_cols=246 Identities=17% Similarity=0.157 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|||+++++|| +++++... . . ....++..+|
T Consensus 25 ~~L~~eA~~~Al~DAgl~~~dID-------~~~~~~~~--~-------------------------~---~~~~l~~~lG 67 (386)
T PRK07855 25 LRLACEAVLAALDDAGLAPSDVD-------GLVTFTMD--T-------------------------N---PEIAVARALG 67 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEecCc--c-------------------------c---cHHHHHHHCC
Confidence 46899999999999999998887 56653210 0 0 0134778899
Q ss_pred CCC--CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEecc--ccccch------------------------------h
Q 008700 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGS--DAAVIP------------------------------I 361 (557)
Q Consensus 316 l~G--p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGv--e~~~~p------------------------------~ 361 (557)
+++ |...|.++|+|+..+|..|+++|++|.||+|||.|+ +..... .
T Consensus 68 l~~~~~~~~v~~gg~sg~~~~~~A~~~I~sG~~d~vLv~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 147 (386)
T PRK07855 68 IGELKFFSRIHYGGGAACATVQQAAMAVATGVADVVVCYRAFNERSGMRFGQGQTGLAENPTSTGVDYGWSYPHGLLTPA 147 (386)
T ss_pred CCCCcceeeecCCcHHHHHHHHHHHHHHHCCCCCEEEEEeecccccccccccccccccccccccccchhhhhhcCCCChH
Confidence 976 446789999999999999999999999999999987 221000 0
Q ss_pred hHHHHHHhhhhhc------------------cCCCCCCCC--CCCcCC--------------CCCceecCceEEEEEcch
Q 008700 362 GLGGFVACRALSQ------------------RNNDPTKAS--RPWDIN--------------RDGFVMGEGAGVLLLEEL 407 (557)
Q Consensus 362 ~~~~~~~~~~Ls~------------------~~~~p~~~~--rpfd~~--------------~dG~v~gEGAaalvLe~~ 407 (557)
.+.++...+.+.+ ...+|.... +|++.+ -|...++|||+++||.++
T Consensus 148 ~~~al~a~~ym~~~G~t~e~lA~vavk~~~~A~~NP~A~~~~~~~t~e~vl~s~~Ia~Pl~~~d~~~~sDGAaAvvl~se 227 (386)
T PRK07855 148 AWVAMLARRYMHEYGATSEDFGRVAVADRKHAATNPKAWFYGRPITLEDHQNSRWIAEPLRLLDCCQESDGAVALVVTSA 227 (386)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcChHhhhcCCCCCHHHHhcCCcccCCchhhhcCCcCCceEEEEEecH
Confidence 0010100010100 011232221 233211 366678999999999999
Q ss_pred HHHHhcCCeeeEEEEEEEEecCCCCCC-----CCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHH
Q 008700 408 EHAKKRGAKIYAEFRGGSFTSDAYHMT-----EPHP-DGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481 (557)
Q Consensus 408 ~~A~~~G~~i~a~I~G~~~~~d~~~~~-----~~~p-~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~A 481 (557)
+.|++.+.++ .+|+|++..++..... .++. .......+++++|+++|++++|||++|+|++++.. ..+..++
T Consensus 228 e~A~~l~~~p-v~I~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~aa~~a~~~AGi~~~DiDv~El~D~Ft~~-~l~~~E~ 305 (386)
T PRK07855 228 ERARDLKQRP-AVIKAAAQGSGADQYMMTSYYRDDITGLPEMGLVARQLWAQSGLGPADIDTAILYDHFTPF-VLMQLEE 305 (386)
T ss_pred HHHhhCCCCC-EEEEEEEEecCCccccccccccccccccchHHHHHHHHHHHcCCCHHHCcEEEeccCCcHH-HHHHHHH
Confidence 9998887665 5899998765433111 0111 12344579999999999999999999999999882 2233333
Q ss_pred HH--------HHhcC-----CCCcccccCccc--ccchhhhHHHHHHHHHHHHHHcC
Q 008700 482 LI--------HCFGQ-----NRGLRVNSTKSM--IGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 482 l~--------~~~~~-----~~~~~v~s~K~~--iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|. +.+.+ ...+||+..-+. .||+. |+.+++++++||+..
T Consensus 306 lG~~~~Ge~~~~v~~G~~~~~G~lPvN~sGGll~~gh~~---G~~~i~E~~~QLrG~ 359 (386)
T PRK07855 306 LGFCGRGEAKDFIADGALELGGRLPINTHGGQLGEAYIH---GMNGIAEAVRQLRGT 359 (386)
T ss_pred cCCCCCCcHHHHHHCCCcccCCcccccCCCcccccCchh---hHHHHHHHHHHHhCC
Confidence 31 11111 123566433333 48876 899999999999974
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=165.97 Aligned_cols=223 Identities=21% Similarity=0.327 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .+++++..+. ......+.+++..+
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~~dId-------~li~~~~~~~-------------------------~~~p~~a~~v~~~l 99 (329)
T PRK07204 52 SSYMGAEAAKKAVEDAKLTLDDID-------CIICASGTIQ-------------------------QAIPCTASLIQEQL 99 (329)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECCCCC-------------------------CCCccHHHHHHHHh
Confidence 467999999999999999998777 5777764311 11234577899999
Q ss_pred CCCC---CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCC
Q 008700 315 GWMG---PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (557)
Q Consensus 315 gl~G---p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~d 391 (557)
|+++ |++.|+.+|+|++.||..|.++|++|.++.+||+++|.+.... .++...+
T Consensus 100 gl~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s~~~-----------------------~~~~~~~ 156 (329)
T PRK07204 100 GLQHSGIPCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVGL-----------------------NWGQNES 156 (329)
T ss_pred CCCCCCceEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEeccccCCC-----------------------CcccCcc
Confidence 9974 8999999999999999999999999999999999999732110 1222345
Q ss_pred CceecCceEEEEEcchHHHHhcCCeee-------------EEEEEEEEecCCCCCCCC-------CCChH--------HH
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIY-------------AEFRGGSFTSDAYHMTEP-------HPDGV--------GV 443 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~-------------a~I~G~~~~~d~~~~~~~-------~p~~~--------~~ 443 (557)
++++||||+|+||++.+.. ..+. ..+.+.+...+....... ..++. .+
T Consensus 157 ~~lfGDGAaA~ll~~~~~~----~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (329)
T PRK07204 157 CILFGDGAAAVVITKGDHS----SRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYL 232 (329)
T ss_pred eEEEecccEEEEEEEcCCC----CcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHH
Confidence 7889999999999975431 1222 122222211111000000 01111 24
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 444 ILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 444 ~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.++++++|+++|++++|||++..|..+... .+++.+.++-.. -.+......+||+.+|+=.+.|... ++++
T Consensus 233 ~~~i~~~L~~~gl~~~did~~~~H~~~~~~-----~~~i~~~l~l~~-e~~~~~~~~~Gn~~sas~~~~L~~~---~~~g 303 (329)
T PRK07204 233 MKFIDKLLMDAGYTLADIDLIVPHQASGPA-----MRLIRKKLGVDE-ERFVTIFEDHGNMIAASIPVALFEA---IKQK 303 (329)
T ss_pred HHHHHHHHHHcCCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCCH-HHhhhhHhhhCcHHHHHHHHHHHHH---HHcC
Confidence 578999999999999999999999887774 345666665432 1233566788999877755555543 4555
Q ss_pred CC
Q 008700 524 WI 525 (557)
Q Consensus 524 ~l 525 (557)
.+
T Consensus 304 ~~ 305 (329)
T PRK07204 304 KV 305 (329)
T ss_pred CC
Confidence 44
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=162.72 Aligned_cols=270 Identities=21% Similarity=0.294 Sum_probs=175.1
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhh-ccCCHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLTA 242 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~-~~md~~~rl~l~a 242 (557)
..+.|+|+|...|.- .+.+++-+.+..-..+|..... |-++.. ..-.....|+.+|
T Consensus 2 ~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtG----------------------ir~R~~a~~~e~~s~la~~A 59 (323)
T COG0332 2 MNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTG----------------------IRERRIAADDETTSDLAVEA 59 (323)
T ss_pred CcceEEEEEeecCCcccChHHHHhccCCCcceeeeecC----------------------CceeeecCCCccHHHHHHHH
Confidence 357899999999998 5666655333222222222111 111111 1123357899999
Q ss_pred HHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-Cee
Q 008700 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNY 321 (557)
Q Consensus 243 a~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G-p~~ 321 (557)
+++||++||+++++|| -+++.+.. |....+..+..+...||+++ +.|
T Consensus 60 a~~AL~~Agi~~~dID-------lII~aT~t-------------------------pd~~~Ps~A~~vq~~LG~~~~~af 107 (323)
T COG0332 60 ARKALEDAGISPDDID-------LIIVATST-------------------------PDHLFPSTACLVQARLGLGGAPAF 107 (323)
T ss_pred HHHHHHHcCCCHHHCC-------EEEEEcCC-------------------------cccCCChHHHHHHHHhCCCCccee
Confidence 9999999999999888 57777654 22234567889999999987 999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
.+..+|++.++||..|..+|++|.++.+||+|.|.+.. .+. |++....+++||||+|
T Consensus 108 Dl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~~S~-----------~ld------------~~dR~t~vlFgDGAgA 164 (323)
T COG0332 108 DLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETLSR-----------ILD------------WTDRDTCVLFGDGAGA 164 (323)
T ss_pred echhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhHhhc-----------cCC------------HhhccceEEEcCCceE
Confidence 99999999999999999999999999999999998311 111 3444578899999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEecCCCCC-------------------CCCCCCh--------HHHHHHHHHHHHHc
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHM-------------------TEPHPDG--------VGVILCIEKALAHS 454 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~-------------------~~~~p~~--------~~~~~ai~~aL~~A 454 (557)
+||++.+ .+.| + ......+|+... .....++ ..+..+++++|+.+
T Consensus 165 vvl~~~~--~~~~--i----~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~~~~~~~L~~~ 236 (323)
T COG0332 165 VVLEATE--DDNG--I----LDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLEKA 236 (323)
T ss_pred EEEecCC--CCcC--e----eeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999876 1111 2 222222221100 0001112 34567899999999
Q ss_pred CCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCC
Q 008700 455 GVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPN 528 (557)
Q Consensus 455 gl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~ 528 (557)
+++++|||++..|-..... .+++.+.++-.. -.+...-..+|++.+|+=-..|.+ .+++|.+.+.
T Consensus 237 ~l~~~dId~~vpHQan~ri-----~~~i~~~l~~~~-~k~~~~~~~yGNtsaAsiplaL~~---~~~~g~ik~G 301 (323)
T COG0332 237 GLTPEDIDWFVPHQANLRI-----IEAIAKKLGIPE-EKVVVTVDKYGNTSAASIPLALDE---ALREGRIKPG 301 (323)
T ss_pred CCCHHHCCEEccccccHHH-----HHHHHHHcCCCH-HHHhhHHHHhcccccchHHHHHHH---HhhhCCCCCC
Confidence 9999999999999544432 344444444321 112222233677766654443333 4567776554
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=170.98 Aligned_cols=250 Identities=19% Similarity=0.215 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHCCCC--hhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 236 MLYLLTAGKKALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~--~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
..|+.+++++||+|||++ +++|| +++++..... ..+.....++..
T Consensus 28 ~~L~~eA~~~Al~DAGl~~~~~dID-------~v~v~~~~~~--------------------------~~~~~~~~la~~ 74 (498)
T PRK08257 28 VDLMAAAARAAAADAGADAVLEAID-------SVAVVNQLSW--------------------------RYRDPPGLLAER 74 (498)
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHCC-------EEEEeccccc--------------------------cccCHHHHHHHH
Confidence 568999999999999999 88787 6777653210 012234678888
Q ss_pred hCCCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh------------------------------
Q 008700 314 LGWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG------------------------------ 362 (557)
Q Consensus 314 lgl~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~------------------------------ 362 (557)
+|+.. +......++.|+..+|..|++.|++|++|+|||+|+|.+.+...
T Consensus 75 lGl~p~~~~~~~~GG~s~~~~v~~Aa~~IasG~advVLv~G~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (498)
T PRK08257 75 LGADPARTVYSPVGGNSPQRLVNEAALRIAAGEADVALVAGAEAQSTATKLRKAGEKLDWTPQDEGPLADRGGDPRPMAS 154 (498)
T ss_pred cCCCCcceeEecCCCHHHHHHHHHHHHHHHCCCCCEEEEeeeeeccccchhccccccccccccccccccccccccccccc
Confidence 99964 45556778889999999999999999999999999997432100
Q ss_pred -------------HHHHH-----------------Hhhhhh-c--c--CCCCC--------------------CCCCCCc
Q 008700 363 -------------LGGFV-----------------ACRALS-Q--R--NNDPT--------------------KASRPWD 387 (557)
Q Consensus 363 -------------~~~~~-----------------~~~~Ls-~--~--~~~p~--------------------~~~rpfd 387 (557)
+..+. ....+. . . ..+|. -.+-||.
T Consensus 155 ~~e~~~G~~~p~~~yal~a~ay~~~~G~t~e~~~a~~a~l~~~~~~~Aa~NP~A~~r~~~t~eevl~~~~~~rmIa~Pl~ 234 (498)
T PRK08257 155 PAELRHGLDRPVYVYPLFENALRAALGRSPEEHRAEMGELWAPFSAVAAKNPHAWIPRERSAEEIVTPTPDNRMIAWPYT 234 (498)
T ss_pred hhhhhcCCCCcchHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhhCHHHhhCCCCCHHHHhcccCCCCeeeCCcc
Confidence 00000 000000 0 0 00111 0112332
Q ss_pred CCCCCceecCceEEEEEcchHHHHhcCC--eeeEEEEEEEEecCCCCCCC-CCC-ChHHHHHHHHHHHHHcCCCCCCccE
Q 008700 388 INRDGFVMGEGAGVLLLEELEHAKKRGA--KIYAEFRGGSFTSDAYHMTE-PHP-DGVGVILCIEKALAHSGVSREDVNY 463 (557)
Q Consensus 388 ~~~dG~v~gEGAaalvLe~~~~A~~~G~--~i~a~I~G~~~~~d~~~~~~-~~p-~~~~~~~ai~~aL~~Agl~~~dId~ 463 (557)
.--+.....||++++||.+++.|++.+. .-...|.|++..++...... ++. .......+.+++|+++|++++|||+
T Consensus 235 ~ldca~~~~DGaaAvil~S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~~r~~~~~~~~~~~aa~~a~~~AGi~~~Did~ 314 (498)
T PRK08257 235 KLMNANDMVDQGAAVLLTSVAKARRLGVPEDRWVYLHGGADAHDPYDILERPDLHRSPAIRAAGRRALALAGLGIDDIDA 314 (498)
T ss_pred HhhcCCCCcccceEEEEeeHHHHHhcCCCCCceEEEEEEEEeeCccccccccccccChHHHHHHHHHHHHhCCCHHHCCE
Confidence 2222223789999999999999998873 22467899988877543322 111 2334557999999999999999999
Q ss_pred EEEcCCCCccCcHHHHHHHHHH-hcCC--CCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 464 INAHATSTPAGDIKEYQALIHC-FGQN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 464 ve~hgtgt~~~D~~E~~Al~~~-~~~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+|+|.+++. .|...+... |... .++++++.-...||+.+++|+.++++++.||+.
T Consensus 315 ~elydcF~~----~~~~~~E~LGl~~~g~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QLRg 372 (498)
T PRK08257 315 FDLYSCFPS----AVQVAARELGLDLDDPRPLTVTGGLPFFGGPGNNYVTHAIAEMVERLRA 372 (498)
T ss_pred EEeccCCHH----HHHHHHHHcCcCCCCCCCcCCCcChhhcCCchhhHHHHHHHHHHHHHhh
Confidence 999999988 444444443 2222 356666666667999999999999999999985
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=162.65 Aligned_cols=244 Identities=16% Similarity=0.136 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+|||+++++|| +++.+.. +.+ ..... ....+...+
T Consensus 24 ~~el~~eA~~~Al~DAgl~~~dID-------~~~~~~~-~~~----------------------~~~~~--~~~~~~~~~ 71 (352)
T PRK07937 24 GVEMLMPCFAELYAELGITKSDIG-------FWCSGSS-DYL----------------------AGRAF--SFISAIDSI 71 (352)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEcc-ccc----------------------ccccc--chhhHHhhc
Confidence 357999999999999999998877 5543321 000 00000 011233446
Q ss_pred CCC-C-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-----------------hh-----hHHHHHHhh
Q 008700 315 GWM-G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-----------------PI-----GLGGFVACR 370 (557)
Q Consensus 315 gl~-G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-----------------p~-----~~~~~~~~~ 370 (557)
|+. + |...+.+ +|..||..|+.+|++|.+|+|||.|+|.+.. |. .+.++...+
T Consensus 72 G~~~~~~~~~v~~---~g~~a~~~A~~aI~sG~~d~VLv~g~~k~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~Al~a~~ 148 (352)
T PRK07937 72 GAVPPINESHVEM---DAAWALYEAWVKLLTGEVDTALVYGFGKSSAGTLRRVLALQLDPYTVAPLWPDSVSMAGLQARA 148 (352)
T ss_pred cCCCCCceEEecC---cHHHHHHHHHHHHhcCCCCEEEEEEecccCccchhhhhhccCCcceeccCCCchHHHHHHHHHH
Confidence 663 3 4555553 6888999999999999999999999986421 10 001111111
Q ss_pred hhhcc------------------CCCCCCCCCCCcC--------------CCCCceecCceEEEEEcchHHHHhcCCeee
Q 008700 371 ALSQR------------------NNDPTKASRPWDI--------------NRDGFVMGEGAGVLLLEELEHAKKRGAKIY 418 (557)
Q Consensus 371 ~Ls~~------------------~~~p~~~~rpfd~--------------~~dG~v~gEGAaalvLe~~~~A~~~G~~i~ 418 (557)
.+.+. ..+|....| ++. .-|...++|||+++||.+++.|++.+.++
T Consensus 149 ym~~yG~t~e~lA~vavk~r~nA~~NP~A~~r-it~edvl~s~~ia~PL~l~d~~~~~DGAaA~vl~s~~~A~~l~~~p- 226 (352)
T PRK07937 149 GLDAGKWTEEQMAEVAARSRADARRNPSAEPS-ISVDELLARPYFADPLRRHDIAPITDGAAAVVLAAGDRARELRERP- 226 (352)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhCchhhcc-CCHHHHhcCCcccCCchhhcCCCCCCcceEEEEecHHHHHHcCCCc-
Confidence 11100 112322222 211 12556689999999999999999988777
Q ss_pred EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCccEEEEcCCCCccCcHHHHHHHHHH-hcCCCCccccc
Q 008700 419 AEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAH-SGVSREDVNYINAHATSTPAGDIKEYQALIHC-FGQNRGLRVNS 496 (557)
Q Consensus 419 a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~-Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~-~~~~~~~~v~s 496 (557)
++|+|++..++.......+.. ...++++++++ +|++|+|||++|+|++++. .|...++.. |....+++.++
T Consensus 227 v~I~g~~~~~~~~~~~~~d~~---~~~~~~~a~~~aAgi~~~diD~~Ei~D~F~~----~~l~~~e~lGl~g~~pvN~~G 299 (352)
T PRK07937 227 AWITGIEHRIESPSLGARDLT---RSPSTALAAEAATGGDAGGVDVAELHAPFTH----QELILREALGLGDKTKVNPSG 299 (352)
T ss_pred EEEEEEEEeeCCccccccccc---cHHHHHHHHHHhcCCCHHHCCEEEEeCCChH----HHHHHHHHcCCCCCCCcCCCc
Confidence 899999887765433211111 23445566666 4999999999999999888 344444332 22322444433
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 497 TKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 497 ~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.--. ||+.||+|+.+++++++||+.+
T Consensus 300 G~l~-ghp~gatG~~~~~e~~~QL~g~ 325 (352)
T PRK07937 300 GALA-ANPMFAAGLERIGEAARHIWDG 325 (352)
T ss_pred cchh-cCchhHHHHHHHHHHHHHHhcc
Confidence 3223 9999999999999999999976
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-16 Score=163.88 Aligned_cols=244 Identities=16% Similarity=0.120 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .+++++..+++ .....+..+...+
T Consensus 63 ~~~La~~A~~~aL~~agi~~~dId-------~li~~s~~~~~-------------------------~~p~~a~~v~~~L 110 (378)
T PRK06816 63 NAQMAAEAIRDLLDDAGFSLGDIE-------LLACGTSQPDQ-------------------------LMPGHASMVHGEL 110 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEECCCCc-------------------------CChHHHHHHHhhC
Confidence 578999999999999999998887 57887653211 1122346788888
Q ss_pred CCCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHH-hhhhhccCCCCCCCCCCCcCCCCC
Q 008700 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVA-CRALSQRNNDPTKASRPWDINRDG 392 (557)
Q Consensus 315 gl~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~-~~~Ls~~~~~p~~~~rpfd~~~dG 392 (557)
|++. |.+.|+.+|+|++.||+.|.++|++|..+.+||+|+|.+........+.. .+.+.. .++..+++|+.+..|
T Consensus 111 gl~~~~~~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 187 (378)
T PRK06816 111 GAPPIEVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAE---LEENPEIAFEKDFLR 187 (378)
T ss_pred CCCCCceeeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhc---CcccCCCCCCCCCCC
Confidence 9865 88999999999999999999999999999999999998654433222221 223322 133457899999999
Q ss_pred ceecCceEEEEEcchHHHHhcCCe--eeEEEEEEE-Eec------------CCCCCC----CCC-----------CChH-
Q 008700 393 FVMGEGAGVLLLEELEHAKKRGAK--IYAEFRGGS-FTS------------DAYHMT----EPH-----------PDGV- 441 (557)
Q Consensus 393 ~v~gEGAaalvLe~~~~A~~~G~~--i~a~I~G~~-~~~------------d~~~~~----~~~-----------p~~~- 441 (557)
+++||||+|+||++.+.. .|.. +.....+.. ... ++.... .+. .++.
T Consensus 188 ~~fGDGA~A~vl~~~~~~--~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (378)
T PRK06816 188 WMLSDGAGAVLLENKPRP--DGLSLRIDWIDLRSYAGELPVCMYAGAEKNEDGSLKGWSDYPPEEAEAASALSLKQDVRL 265 (378)
T ss_pred EeeecccEEEEEEecCCC--CCceEEEEEEeeecccccCccceecCCccCCCCCccCcccCCHHHHHhccCchHHhHHHH
Confidence 999999999999865432 2321 111000000 000 000000 000 0111
Q ss_pred -------HHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHh-----cCC-CCcccccCcccccchhhhH
Q 008700 442 -------GVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCF-----GQN-RGLRVNSTKSMIGHLLGAA 508 (557)
Q Consensus 442 -------~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~-----~~~-~~~~v~s~K~~iGH~~gAa 508 (557)
.....++++|+++|++++|||++..|.......+ ++.+.+ +-. ... -..-..+||+.+|+
T Consensus 266 ~~~~~~~~~~~~i~~~L~~~gl~~~DId~~v~Hq~n~~~~~-----~v~~~l~~~~~gl~~~k~--~~~~~~~GNt~sAs 338 (378)
T PRK06816 266 LNENIVVYTIKPLLELVDKRNLDPDDIDYFLPHYSSEYFRE-----KIVELLAKAGFMIPEEKW--FTNLATVGNTGSAS 338 (378)
T ss_pred HHHHhHHHHHHHHHHHHHHcCCChhhCCEEeeCcccHHHHH-----HHHHHHHhccCCCChhhe--EEeccccccccchH
Confidence 1266788999999999999999999977665433 333322 211 111 12334689999888
Q ss_pred HHHHHHHHHHHHHcCCC
Q 008700 509 GAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 509 G~~~li~~~~~l~~~~l 525 (557)
-.+.|..+ ++++.+
T Consensus 339 ipi~L~~a---~~~g~~ 352 (378)
T PRK06816 339 IYIMLDEL---LNSGRL 352 (378)
T ss_pred HHHHHHHH---HHcCCC
Confidence 77666544 455555
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=162.67 Aligned_cols=262 Identities=19% Similarity=0.233 Sum_probs=168.7
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
..|.|+++|..+|.- .+.+++.+.+......+.. + .++ .. ..+..+ -.....|+.+++
T Consensus 2 ~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~--~---~gi--------~~---r~~~~~-----~~~~~~la~~A~ 60 (319)
T PRK09352 2 MYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVT--R---TGI--------KE---RRIAAP-----DETTSDLATEAA 60 (319)
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhh--h---cCe--------EE---EEeCCC-----CCCHHHHHHHHH
Confidence 468899999999998 6777777754211100100 0 000 00 000001 123578999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-Ceee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G-p~~t 322 (557)
++||+++|++++++| .|++|+.... ......+..++..+|+.+ |.++
T Consensus 61 ~~al~~agl~~~~id-------~vi~~~~~~~-------------------------~~~~~~~~~i~~~lG~~~~~~~~ 108 (319)
T PRK09352 61 KKALEAAGIDPEDID-------LIIVATTTPD-------------------------YAFPSTACLVQARLGAKNAAAFD 108 (319)
T ss_pred HHHHHHcCCCHHHCC-------EEEEEcCCCC-------------------------CCCchHHHHHHHHhCCCCCcEee
Confidence 999999999998776 6888865311 111224678999999987 9999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+.+|+|++.||..|+++|++|++|.+||+|+|.+.... . ++....++++||||+|+
T Consensus 109 v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~----------------------~-~~~~~~~~~~gDGaaA~ 165 (319)
T PRK09352 109 LSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIV----------------------D-WTDRSTCVLFGDGAGAV 165 (319)
T ss_pred ccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc----------------------C-cccCCceEEEeccceEE
Confidence 999999999999999999999999999999999842110 0 11123467899999999
Q ss_pred EEcchHHHHhcCCeeeEEEEEEEEecCCCC---CCCCC-------------CCh--------HHHHHHHHHHHHHcCCCC
Q 008700 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYH---MTEPH-------------PDG--------VGVILCIEKALAHSGVSR 458 (557)
Q Consensus 403 vLe~~~~A~~~G~~i~a~I~G~~~~~d~~~---~~~~~-------------p~~--------~~~~~ai~~aL~~Agl~~ 458 (557)
||++.+.. .+ .++...+++.. ...|. ..+ ..+.++++++|+++|+++
T Consensus 166 ll~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~g~~~ 236 (319)
T PRK09352 166 VLGASEEP-----GI----LSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAGLTP 236 (319)
T ss_pred EEEEcCCC-----Ce----EEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99985432 11 22222222211 00000 011 234568999999999999
Q ss_pred CCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHH
Q 008700 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 459 ~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~ 517 (557)
+||+|+..|..+.... ..+.+.++-... .+......+||+.+|+-.+.|..++
T Consensus 237 ~di~~~~~h~~~~~~~-----~~~~~~lg~~~~-~~~~~~~~~Gn~~~a~~~~~L~~~~ 289 (319)
T PRK09352 237 EDIDWLVPHQANLRII-----DATAKKLGLPME-KVVVTVDKYGNTSAASIPLALDEAV 289 (319)
T ss_pred HHCCEEEECCCCHHHH-----HHHHHHhCCCHH-HhhhhHHhhCCHHHHHHHHHHHHHH
Confidence 9999999996544432 334444442211 1223345799999888777776544
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=154.71 Aligned_cols=244 Identities=21% Similarity=0.327 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC-
Q 008700 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW- 316 (557)
Q Consensus 238 l~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl- 316 (557)
|+..+.+..+|+-+++|..+.+ |++|+..... ..++.+..-+++-|+
T Consensus 64 Ll~~vl~a~ie~t~~dp~~igd-------i~vG~vL~pg-------------------------~ga~e~R~a~~~ag~P 111 (435)
T KOG1389|consen 64 LLAAVLRAVIEKTNLDPSLIGD-------IVVGTVLAPG-------------------------SGASECRMAAFYAGFP 111 (435)
T ss_pred HHHHHHHHHHhhcCCCHHHhcc-------eeeeeccCCC-------------------------cchHHHHHHHHHcCCC
Confidence 4555667788999999987663 7788754221 112333444555676
Q ss_pred -CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh--hH--------HHHHH-----------------
Q 008700 317 -MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI--GL--------GGFVA----------------- 368 (557)
Q Consensus 317 -~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~--~~--------~~~~~----------------- 368 (557)
.-|..+|+..|+|||+|+..-+..|+.|.+|+-|.+|+|+|.+.+ .+ ..|..
T Consensus 112 ~tvpv~tvNRqCsSGLqaVadiA~~Ir~G~ydIGla~GvESMt~~~~~g~~g~~~~~~~~~~~A~dCllpmGitsEnva~ 191 (435)
T KOG1389|consen 112 ETVPVRTVNRQCSSGLQAVADIAAKIRAGFYDIGLAAGVESMTTNYPRGWPGSINPRLQKFEKARDCLLPMGITSENVAE 191 (435)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHhcCceeeecccchhhhcccCCCCCccccChhhhhhhHHhhcccccccchHHHHH
Confidence 469999999999999999999999999999999999999986542 10 00000
Q ss_pred -----------------hhhhh---------------ccCCCCCCC-----------CCC-------------CcCC---
Q 008700 369 -----------------CRALS---------------QRNNDPTKA-----------SRP-------------WDIN--- 389 (557)
Q Consensus 369 -----------------~~~Ls---------------~~~~~p~~~-----------~rp-------------fd~~--- 389 (557)
.++.. ....+|.+. .|| |-++
T Consensus 192 rfgvsR~eqD~~Av~S~kkAa~A~~~G~f~dEIiPv~tkv~D~~g~~k~i~v~~DeGiRp~ttl~~l~klkpvFkkdGtt 271 (435)
T KOG1389|consen 192 RFGVSREEQDEAAVDSHKKAAAATAKGKFKDEIIPVKTKVVDPKGDEKPITVSVDEGIRPNTTLESLAKLKPVFKKDGTT 271 (435)
T ss_pred HhCCChhhhhHHHHHHHHHHHHHhhcCcchhheeeeeeeccCCcCCccceeEecCCCCCCCcchhHHhhcchhhhcCCcc
Confidence 00000 001122222 222 1111
Q ss_pred --CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEc
Q 008700 390 --RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAH 467 (557)
Q Consensus 390 --~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~h 467 (557)
.|.--.+||+++++|.+.+.|.+.|.+|+++++.+... ...|..++.+...+|.++|+.+|+..+|||++|++
T Consensus 272 TagNsSQvSDGa~aVLLmkRs~A~qlgLPvlgvfr~f~~v-----Gv~P~iMGiGPavAIp~alk~aGL~v~did~FEIN 346 (435)
T KOG1389|consen 272 TAGNSSQVSDGAGAVLLMKRSVAMQLGLPVLGVFRDFAAV-----GVPPAIMGIGPAVAIPKALKAAGLEVDDIDLFEIN 346 (435)
T ss_pred ccCchhhcccchhhhhhhhhhhHhhcCCceeEEeeeeeee-----cCCHHHcCCCchhhhHHHHHHcCCcccccceeehh
Confidence 12234689999999999999999999999999988765 23455566777899999999999999999999975
Q ss_pred CCCCccCcHHHHHHHHHH--hc-CCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 468 ATSTPAGDIKEYQALIHC--FG-QNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 468 gtgt~~~D~~E~~Al~~~--~~-~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+..-.+++--. ++ +...++++...-.+|||+||+|+..++..+..|++.-+
T Consensus 347 -------EAFAsQ~~yc~~KL~ld~ekVN~~GGaiAlGHPlGatGAR~VaTlL~emKrrgk 400 (435)
T KOG1389|consen 347 -------EAFASQALYCRNKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRGK 400 (435)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHcCCCCceeeccCCcCCccHhHHHHHHHHHHhhcc
Confidence 32333333111 11 11346777778889999999999999999999987544
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-17 Score=155.44 Aligned_cols=249 Identities=23% Similarity=0.329 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC
Q 008700 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (557)
Q Consensus 238 l~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~ 317 (557)
++-++...||+|+++.-++++ ..-+|-++|.+..+. |.-+.+|++
T Consensus 32 ~a~ea~tkal~da~ikys~vq---qa~vgyvfgdstcgq--------------------------------raiyevgmt 76 (408)
T KOG1406|consen 32 FAKEAITKALQDAGIKYSEVQ---QAVVGYVFGDSTCGQ--------------------------------RAIYEVGMT 76 (408)
T ss_pred HHHHHHHHHHHhcCCCHHHHH---hhhheeeecCCccch--------------------------------HHHHhcccc
Confidence 577889999999999876443 456677777554332 223458888
Q ss_pred C-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccch------------------------------hh--HH
Q 008700 318 G-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP------------------------------IG--LG 364 (557)
Q Consensus 318 G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p------------------------------~~--~~ 364 (557)
| |.+.|++.|++|..||.+|.+.|++|..|+||+.|.|.|..- .. ++
T Consensus 77 gipi~nvnnncatgssalflakqiiesgn~dcvlalgfekm~~gsl~~k~~dra~p~dkhi~~m~e~ygl~a~pmaaqmf 156 (408)
T KOG1406|consen 77 GIPIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKMERGSLSNKAADRALPVDKHISVMSETYGLEAAPMAAQMF 156 (408)
T ss_pred CcceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhhCCcccchhhhhccCcchhhHHHHHhhccCCCCcchHHHh
Confidence 8 999999999999999999999999999999999999975310 00 00
Q ss_pred H------HHHhhhh----hc--cCCCCCCCCCCCcCCCC---------------------CceecCceEEEEEcchHHHH
Q 008700 365 G------FVACRAL----SQ--RNNDPTKASRPWDINRD---------------------GFVMGEGAGVLLLEELEHAK 411 (557)
Q Consensus 365 ~------~~~~~~L----s~--~~~~p~~~~rpfd~~~d---------------------G~v~gEGAaalvLe~~~~A~ 411 (557)
+ +.+.+.- .+ ..+.......|+.+-+| +...+||+++.||.++...+
T Consensus 157 gnagkehmekygtk~ehfakiawknhkhsvnnpysqf~deysldqvm~s~~v~dflt~lqccptsdgaaaailaseafv~ 236 (408)
T KOG1406|consen 157 GNAGKEHMEKYGTKPEHFAKIAWKNHKHSVNNPYSQFRDEYSLDQVMKSPQVVDFLTKLQCCPTSDGAAAAILASEAFVR 236 (408)
T ss_pred hhhHHHHHHHhCCCHHHHhHhhhhccccccCChhHhhhhhccHHHHhcchHHHHHHHHhhcCCCCCchHHHHHhHHHHHH
Confidence 0 0000000 00 00111122334433332 33368999999999999988
Q ss_pred hcCCeeeE-EEEEEEEecCCCCCCCCCC-----ChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHH
Q 008700 412 KRGAKIYA-EFRGGSFTSDAYHMTEPHP-----DGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHC 485 (557)
Q Consensus 412 ~~G~~i~a-~I~G~~~~~d~~~~~~~~p-----~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~ 485 (557)
+.|..-.+ +|.|.-+.+|..+...... -.+-...+.++.+++.|++|.||+.||.|++..+ ++.+-++||.-+
T Consensus 237 k~gl~~qaveivg~em~td~ps~faeks~ikm~gfdm~~~aa~~l~aksgltpndvqvielhdcfs~-nelityealglc 315 (408)
T KOG1406|consen 237 KHGLEKQAVEIVGMEMATDPPSTFAEKSLIKMAGFDMTRLAAKRLFAKSGLTPNDVQVIELHDCFSA-NELITYEALGLC 315 (408)
T ss_pred hcccHHHHHHHHHHHhccCCchhhhhhhhhhhhcchHHHHHHHHHHHHcCCCcccceEEEeecccch-hhhhhHHHhcCC
Confidence 88876544 4777776666543221111 1133467889999999999999999999999988 788888888543
Q ss_pred hc----------CC---CCcccccCc--ccccchhhhHHHHHHHHHHHHHHc
Q 008700 486 FG----------QN---RGLRVNSTK--SMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 486 ~~----------~~---~~~~v~s~K--~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
-- ++ ....++-.. -.-||++||+|+++.+++.++|+.
T Consensus 316 pegqg~~~vdrgdntyggkwvinpsggliskghplgatglaqcaelcwqlrg 367 (408)
T KOG1406|consen 316 PEGQGGEFVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRG 367 (408)
T ss_pred CCCCCceeeecCCCccCceEEECCCCccccCCCcCccchHHHHHHHHHHHhh
Confidence 21 11 112233333 334999999999999999999984
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=148.76 Aligned_cols=250 Identities=24% Similarity=0.369 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
+..|...+++.||..+++.++.+| -|++|+...... -.-.++.++....
T Consensus 28 aTdL~~~AakAAL~aa~v~~e~VD-------~VI~GNV~aSSs------------------------DgIYl~RHvGL~~ 76 (396)
T KOG1391|consen 28 ATDLGVVAAKAALKAANVGAEAVD-------HVIMGNVLASSS------------------------DGIYLARHVGLRV 76 (396)
T ss_pred hhhHHHHHHHHHHhhcCCChhhcc-------eEEEeeeeeccC------------------------CceEeeecccccc
Confidence 456788889999999999988766 577776421100 0111233444444
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh---------------------HH-------
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG---------------------LG------- 364 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~---------------------~~------- 364 (557)
|. .-|..+|+.-|.|+.++|-.+++.|.-|+++++|+||+|.|..... +.
T Consensus 77 GvP~e~pALtiNRLCGSGFQsiVNgaQ~I~vgea~ivL~GGtEnMSq~Pf~vRnvRFGT~LG~~y~lED~LW~sLtD~y~ 156 (396)
T KOG1391|consen 77 GVPKETPALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAPFCVRNVRFGTKLGSDYKLEDSLWVSLTDQYV 156 (396)
T ss_pred CCcCccCceeehhhhcccHHHHHhhHHHhhcCcceEEEecCccccccCcceeeeeeeccccccccchhhhHhhhccchhh
Confidence 44 3599999999999999999999999999999999999998753211 00
Q ss_pred ----HH----------------HHhhhhhcc-----------CC----------------CCCCCCCCCc----------
Q 008700 365 ----GF----------------VACRALSQR-----------NN----------------DPTKASRPWD---------- 387 (557)
Q Consensus 365 ----~~----------------~~~~~Ls~~-----------~~----------------~p~~~~rpfd---------- 387 (557)
++ +.....++. ++ .-++..||-.
T Consensus 157 kLpMa~TAEnL~~qyKisRee~DefaL~SQ~~Wkkaq~aG~fn~Ei~pI~~K~kkge~~f~vDEHpRp~TT~E~L~KLpp 236 (396)
T KOG1391|consen 157 KLPMAMTAENLAVQYKISREECDEFALQSQQRWKKAQDAGYFNDEIAPIEVKTKKGEQTFQVDEHPRPQTTLEQLQKLPP 236 (396)
T ss_pred hcchhhhHHHhhhhheecHHHhhHHHhhhHHHHHhhhhcCcccccccceEEeeccCceeeEecCCCCccchHHHHhhCCc
Confidence 00 000000000 00 0112223211
Q ss_pred -CCCCCce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 008700 388 -INRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459 (557)
Q Consensus 388 -~~~dG~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~ 459 (557)
-..||.+ ++|||+++|+.+++..++.+.+++++|.++++.. ..|..++.+...+|+.+|+.+|+..+
T Consensus 237 vFkKdG~VtAGnASGi~DGA~AvivAsEdavK~~NlkPLARiVays~vG-----cdP~IMGIGPvPAI~~vLKksGlkl~ 311 (396)
T KOG1391|consen 237 VFKKDGTVTAGNASGIADGAGAVIVASEDAVKKHNLKPLARIVAYSVVG-----CDPSIMGIGPVPAISGVLKKSGLKLK 311 (396)
T ss_pred hhccCCeeeccccccccCCceeEEEechhHHhhcCCchhhhhheeeeec-----cChhhccccCcHHHHHHHHHcCCccc
Confidence 0234554 5799999999999999999999999999998642 23444455667799999999999999
Q ss_pred CccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 460 DVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 460 dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
|||.||.+..+.+ .+.+..+.++-. ..++|+...-.+|||+||||.....+.++.|+++..
T Consensus 312 DiDl~EvNEAFAp-----Q~LAv~r~L~ld~sKlNVNGGAIALGHPLgaSGsRIt~HlVHEL~Rr~~ 373 (396)
T KOG1391|consen 312 DIDLVEVNEAFAP-----QYLAVERSLDLDISKLNVNGGAIALGHPLGASGSRITAHLVHELRRRGG 373 (396)
T ss_pred ccceEEechhhch-----HHHHHHHhhCCChhhccccCceeeccCccccCcchhhHHHHHHHHHcCC
Confidence 9999998765544 344555666532 467888888899999999999999999999987543
|
|
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=155.05 Aligned_cols=285 Identities=18% Similarity=0.192 Sum_probs=176.2
Q ss_pred CCCcEEEEecceeccCC-CCHHHHHHHHHcCC--CcceeccCC-CCCCCCccccccccCCCCCCCCChhhhccCCHHHHH
Q 008700 163 KQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGV--SGISEIETF-DCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLY 238 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g-~~~~~lw~~L~~G~--~~i~~~~~~-~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl 238 (557)
+...+.|+|+|...|.- .+.+++.+.+.+.- ..+.+ ..+ +..+...+ .+..+. .....|
T Consensus 2 ~~~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~-~~i~~~~Gi~~R-----------~~~~~~-----~~~~~l 64 (338)
T PRK09258 2 KYSNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPP-GQLEALTGIRER-----------RWWPEG-----TQLSDG 64 (338)
T ss_pred cccceEEEEEEecCCCccCcHHHHHHHhhhcccccCCCh-hHhhhhcCceeE-----------ecCCCC-----CCHHHH
Confidence 34568999999999998 56677666543211 11100 000 00000000 001111 124679
Q ss_pred HHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-
Q 008700 239 LLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM- 317 (557)
Q Consensus 239 ~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~- 317 (557)
+.+|+++||+++|+++++|| .|++++... .......+.+++..+|+.
T Consensus 65 a~~Aa~~aL~~ag~~~~~Id-------~li~~s~~~-------------------------~~~~p~~a~~v~~~lgl~~ 112 (338)
T PRK09258 65 AIAAGRKALAEAGIDPSDIG-------LLINTSVCR-------------------------DYLEPATACRVHHNLGLPK 112 (338)
T ss_pred HHHHHHHHHHHcCCCHHHCC-------EEEEEcCCC-------------------------CCCCChHHHHHHHHcCCCC
Confidence 99999999999999998777 577776421 112234678899999996
Q ss_pred -CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceec
Q 008700 318 -GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (557)
Q Consensus 318 -Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~g 396 (557)
.+.+.|..+|+|++.||+.|.++|++|.++.+||++.|.+.... -..+.. ... +.....+|+.....+++|
T Consensus 113 ~~~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~s~~~-~~~~~~--~~~-----~~~~~~~~~~~~~~~~~G 184 (338)
T PRK09258 113 SCANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESAREIV-EATIDR--LLA-----PETTREDFAQSFATLTLG 184 (338)
T ss_pred CCceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEecccchhc-cchhhh--hcc-----CccchhhhhhccceEEec
Confidence 48899999999999999999999999999999999999743221 111111 111 111224566666788999
Q ss_pred CceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCC--C-----CCCCh--------HHHHHHHHHHHHHcCCCCCCc
Q 008700 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT--E-----PHPDG--------VGVILCIEKALAHSGVSREDV 461 (557)
Q Consensus 397 EGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~--~-----~~p~~--------~~~~~ai~~aL~~Agl~~~dI 461 (557)
|||+|+||++.+.. ..+. .+.+.....++.+.. . ...++ .....+++++|+++|++++||
T Consensus 185 DGA~A~ll~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~di 259 (338)
T PRK09258 185 SGAAAAVLTRGSLH-PRGH----RLLGGVTRAATEHHELCQGGRDGMRTDAVGLLKEGVELAVDTWEAFLAQLGWAVEQV 259 (338)
T ss_pred ccceEEEEecCCCC-CCcc----eeeeeeeecCCCcccccccCccceEEcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 99999999975421 1122 233333322222110 0 00111 233458889999999999999
Q ss_pred cEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHH
Q 008700 462 NYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAV 516 (557)
Q Consensus 462 d~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~ 516 (557)
|++..|..+.+..+ .+.+.++-. ..+. ... ..+||+.+|+=.+.|..+
T Consensus 260 d~~i~H~~~~~~~~-----~~~~~lgl~~~k~~-~~~-~~~GN~~sas~~~~L~~~ 308 (338)
T PRK09258 260 DRVICHQVGAAHTR-----AILKALGIDPEKVF-TTF-PTLGNMGPASLPITLAMA 308 (338)
T ss_pred CEEecCCCCHHHHH-----HHHHHhCCCHHHce-ehH-hhhCCcHHhHHHHHHHHH
Confidence 99999987666433 444444432 1122 122 368999988766666554
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=155.38 Aligned_cols=265 Identities=19% Similarity=0.234 Sum_probs=168.7
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~e 245 (557)
+.|.++|..+|.- .+.+++.+.+......+.+ ..++..+ .+..+ -.....|+.+++++
T Consensus 3 ~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~-----~~gi~~r-----------~~~~~-----~~~~~~la~~A~~~ 61 (318)
T TIGR00747 3 AGILGTGSYLPEKVLTNADLEKMVDTSDEWIVT-----RTGIKER-----------RIAAD-----DETSSTMGFEAAKR 61 (318)
T ss_pred CEEEEEEEECCCceecHHHHHHhcCCchHHeec-----ccCceEE-----------EECCC-----CCCHHHHHHHHHHH
Confidence 7799999999997 6778877654311111100 0000000 00001 12347789999999
Q ss_pred HHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-Ceeeec
Q 008700 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSIS 324 (557)
Q Consensus 246 ALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G-p~~tv~ 324 (557)
||+++|+++++|| .+++++.... ......+.+++..+|+++ |.++|+
T Consensus 62 al~~agl~~~~Id-------~~i~~~~~~~-------------------------~~~~~~a~~l~~~lGl~~~~~~~v~ 109 (318)
T TIGR00747 62 AIENAGISKDDID-------LIIVATTTPD-------------------------HAFPSAACMVQAYLGIKGIPAFDLS 109 (318)
T ss_pred HHHHcCCCHHHCC-------EEEEECCCCC-------------------------CCCChHHHHHHHHhCCCCCcEeehh
Confidence 9999999998777 6777764311 111224678999999988 999999
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEEE
Q 008700 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (557)
Q Consensus 325 ~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalvL 404 (557)
.+|+|++.||..|+++|++|.++.+||+|+|.+.... ++ ......+++||||+|+||
T Consensus 110 ~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~~----------------------~~-~~~~~~~~~GDGAaA~lL 166 (318)
T TIGR00747 110 AACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSSTL----------------------DW-TDRGTCVLFGDGAGAVVL 166 (318)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC----------------------Cc-CCCCeEEEEecceeEEEE
Confidence 9999999999999999999999999999999843210 11 112235679999999999
Q ss_pred cchHHHHhcCCeeeEEEEEEEEecCCC---CCCCC-------CCC--------------hHHHHHHHHHHHHHcCCCCCC
Q 008700 405 EELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEP-------HPD--------------GVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 405 e~~~~A~~~G~~i~a~I~G~~~~~d~~---~~~~~-------~p~--------------~~~~~~ai~~aL~~Agl~~~d 460 (557)
++.+... . |......+++. ....| ... .....++++++|+++|++++|
T Consensus 167 ~~~~~~~----~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~d 238 (318)
T TIGR00747 167 GESEDPG----G----IISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLDPED 238 (318)
T ss_pred eecCCCC----c----EEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 8754321 1 22222222221 00000 000 123456789999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 461 VNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
|+|+..|..+.+.- ..+.+.++-.. ++. . .-..+||+.+|+=.+.|..++ +++.+
T Consensus 239 i~~~~~h~~~~~~~-----~~~~~~lgi~~~k~~-~-~~~~~Gn~~sas~~~~L~~~~---~~~~~ 294 (318)
T TIGR00747 239 IDWFVPHQANLRII-----EALAKRLELDMSQVV-K-TVHKYGNTSAASIPLALDELL---RTGRI 294 (318)
T ss_pred CCEEEECCCCHHHH-----HHHHHHcCCCHHHee-e-hHhhhCCHHHHHHHHHHHHHH---HcCCC
Confidence 99999997765533 23444454321 121 1 223489999888777765543 45544
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-15 Score=152.84 Aligned_cols=266 Identities=21% Similarity=0.274 Sum_probs=172.5
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~e 245 (557)
+.|+|+|...|.- .+.+++.+.+ +... ..+ ++..++.. ..+..+ -.....|+.+|+++
T Consensus 2 ~~I~~i~~~lP~~~~~~~~~~~~~--~~~~-~~~--~~~~Gi~~-----------r~~~~~-----~~~~~~la~~A~~~ 60 (320)
T cd00830 2 ARILGIGSYLPERVVTNDELEKRL--DTSD-EWI--RTRTGIRE-----------RRIADP-----GETTSDLAVEAAKK 60 (320)
T ss_pred CEEEEEEEECCCcEEcHHHHHHHc--CCCH-HHh--hhccCceE-----------EeeCCC-----CCCHHHHHHHHHHH
Confidence 6799999999987 6777776654 2110 000 00000000 000111 12357899999999
Q ss_pred HHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC-CCCeeeec
Q 008700 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW-MGPNYSIS 324 (557)
Q Consensus 246 ALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl-~Gp~~tv~ 324 (557)
||+++|+++++|| .+++++.... ......+.+++..+|+ +.|.+.|+
T Consensus 61 al~~ag~~~~~Id-------~li~~~~~~~-------------------------~~~~~~~~~l~~~lg~~~~~~~~v~ 108 (320)
T cd00830 61 ALEDAGIDADDID-------LIIVATSTPD-------------------------YLFPATACLVQARLGAKNAAAFDIN 108 (320)
T ss_pred HHHHcCCCHHHCC-------EEEEEcCCCC-------------------------CCCCcHHHHHHHHhCCCCCcEeecc
Confidence 9999999998777 6777764311 1112356789999999 66899999
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEEE
Q 008700 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (557)
Q Consensus 325 ~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalvL 404 (557)
.+|+|++.||..|.++|++|.++.+||+++|.+.... -|+....++++||||+|+||
T Consensus 109 ~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~-----------------------~~~~~~~~~~~GDgAaA~ll 165 (320)
T cd00830 109 AACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRIL-----------------------DWTDRSTAVLFGDGAGAVVL 165 (320)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcccc-----------------------CcccCCceEEEeccceEEEE
Confidence 9999999999999999999999999999999842210 03334567899999999999
Q ss_pred cchHHHHhcCCeeeEEEEEEEEecCCCCC---CCCC------------------CC--------hHHHHHHHHHHHHHcC
Q 008700 405 EELEHAKKRGAKIYAEFRGGSFTSDAYHM---TEPH------------------PD--------GVGVILCIEKALAHSG 455 (557)
Q Consensus 405 e~~~~A~~~G~~i~a~I~G~~~~~d~~~~---~~~~------------------p~--------~~~~~~ai~~aL~~Ag 455 (557)
++.+. +..+ .+....+++... ..+. .. .....++++++|+++|
T Consensus 166 ~~~~~----~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~g 237 (320)
T cd00830 166 EATEE----DPGI----LDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAG 237 (320)
T ss_pred EecCC----CCcE----EEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHHHHHHHcC
Confidence 97543 2222 233332222100 0000 00 1234578999999999
Q ss_pred CCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 456 VSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 456 l~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
++++|||++..|..+....+ .+.+.++-... .+......+||+.+|+=.+.|..++ +.+.+
T Consensus 238 ~~~~di~~~~~h~~~~~~~~-----~~~~~lgl~~~-~~~~~~~~~Gn~~sas~~~~L~~~~---~~~~~ 298 (320)
T cd00830 238 LTPDDIDWFVPHQANLRIIE-----AVAKRLGLPEE-KVVVNLDRYGNTSAASIPLALDEAI---EEGKL 298 (320)
T ss_pred CCHHHCCEEEECCCCHHHHH-----HHHHHhCCCHH-HhhhhHHhhCcHHHHHHHHHHHHHH---HcCCC
Confidence 99999999999977666432 34444553211 1223345789999988777776553 45544
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=150.49 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=168.2
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
.+.|.|+|...|.- .+.+++.+.+......+. +..+...+. +..+ -.....|+.++++
T Consensus 4 ~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~-----~~~Gi~~r~-----------~~~~-----~~~~~~la~~A~~ 62 (325)
T PRK12879 4 YARITGIGTYVPPRVLTNDDLETFIDTSDEWIV-----QRTGIKERR-----------IAHV-----EEYTSDLAIKAAE 62 (325)
T ss_pred CCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhh-----hccCceEEE-----------ECCC-----CCCHHHHHHHHHH
Confidence 47899999999998 677777654311000000 000110000 0111 1225689999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-CCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~-Gp~~tv 323 (557)
+||+++|+++++|| .|++++...+ ......+.+++..+|++ .+.+.|
T Consensus 63 ~al~~ag~~~~~Id-------~li~~~~~~~-------------------------~~~~~~a~~l~~~lg~~~~~~~~v 110 (325)
T PRK12879 63 RALARAGLDAEDID-------LIIVATTTPD-------------------------YLFPSTASQVQARLGIPNAAAFDI 110 (325)
T ss_pred HHHHHcCCCHHHCC-------EEEEEcCCCC-------------------------CCCChHHHHHHHHhCCCCCcEEEE
Confidence 99999999998777 5777764311 11223567899999996 589999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+.+|+|++.||..|.++|++|.++.+||+++|.+.... .++.....+++||||+|+|
T Consensus 111 ~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~~~-----------------------~~~~~~~~~~~GDgAaA~l 167 (325)
T PRK12879 111 NAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKVT-----------------------DYTDRTTCILFGDGAGAVV 167 (325)
T ss_pred CccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcC-----------------------CccccCceEEEeecceEEE
Confidence 99999999999999999999999999999999732110 0111234578999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCC----------CCC----------CCCCCh--------HHHHHHHHHHHHHcC
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAY----------HMT----------EPHPDG--------VGVILCIEKALAHSG 455 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~----------~~~----------~~~p~~--------~~~~~ai~~aL~~Ag 455 (557)
|++.+.. ..+.. ....+++. ... ....++ ..+..+++++|+++|
T Consensus 168 l~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g 239 (325)
T PRK12879 168 LEATENE----PGFID----YVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQVLEKAG 239 (325)
T ss_pred EEecCCC----CCeEE----EEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9975431 11211 11111110 000 000111 223568899999999
Q ss_pred CCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 456 VSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 456 l~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
++++|||++..|..+... .+.+.+.++-. .++.. ....+||+.+|+-.+.|..+ ++++.+
T Consensus 240 ~~~~did~~~~h~~~~~~-----~~~~~~~lg~~~~~~~~--~~~~~Gn~~sas~~~~L~~~---~~~g~~ 300 (325)
T PRK12879 240 LTKDDIDWVIPHQANLRI-----IESLCEKLGIPMEKTLV--SVEYYGNTSAATIPLALDLA---LEQGKI 300 (325)
T ss_pred CCHHHCCEEEECCCCHHH-----HHHHHHHcCCCHHHhhh--hHhhhCchHHHHHHHHHHHH---HHcCCC
Confidence 999999999999655443 34555665532 12222 34679999988877666544 455544
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-14 Score=144.89 Aligned_cols=264 Identities=17% Similarity=0.212 Sum_probs=164.6
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~e 245 (557)
+-|+|+|...|.- .+.+++-+.+......|.. ..++..+. +..+ -.....|+.+++++
T Consensus 3 v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~-----~~gi~~r~-----------~~~~-----~~~~~~la~~A~~~ 61 (326)
T CHL00203 3 VHILSTGSSVPNFSVENQQFEDIIETSDHWIST-----RTGIKKRH-----------LAPS-----STSLTKLAAEAANK 61 (326)
T ss_pred cEEEEEEEECCCeEEcHHHHHHhcCCChhhEee-----ccCeEEEE-----------eCCC-----CCCHHHHHHHHHHH
Confidence 6799999999998 6777766544210011110 00010000 0111 11247799999999
Q ss_pred HHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-Ceeeec
Q 008700 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSIS 324 (557)
Q Consensus 246 ALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G-p~~tv~ 324 (557)
||+++|+++++|| .|++|+..... . . ..+..+...+|+++ +.+.|.
T Consensus 62 aL~~ag~~~~dId-------~vi~~s~~~~~---------------------~---~--~~~~~v~~~Lg~~~~~~~~v~ 108 (326)
T CHL00203 62 ALDKAHMDPLEID-------LIILATSTPDD---------------------L---F--GSASQLQAEIGATRAVAFDIT 108 (326)
T ss_pred HHHHcCCCHHHCC-------EEEEEeCCCCC---------------------C---C--chHHHHHHHhCCCCCceeeec
Confidence 9999999998887 57787643110 0 0 12356788889865 789999
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEEE
Q 008700 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (557)
Q Consensus 325 ~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalvL 404 (557)
.+|+|++.||..|.++|++|.++.+||+|+|.+..-. .++.....+++||||+|+||
T Consensus 109 ~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s~~~-----------------------~~~~~~~~~~fgDga~A~ll 165 (326)
T CHL00203 109 AACSGFILALVTATQFIQNGSYKNILVVGADTLSKWI-----------------------DWSDRKTCILFGDGAGAAII 165 (326)
T ss_pred ccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhhCcC-----------------------CcccCCceEEEcceeeEEEE
Confidence 9999999999999999999999999999999832110 01222346789999999999
Q ss_pred cchHHHHhcCCeeeEEEEEEEEecCCCC----------------C--CCCC-------CCh--------HHHHHHHHHHH
Q 008700 405 EELEHAKKRGAKIYAEFRGGSFTSDAYH----------------M--TEPH-------PDG--------VGVILCIEKAL 451 (557)
Q Consensus 405 e~~~~A~~~G~~i~a~I~G~~~~~d~~~----------------~--~~~~-------p~~--------~~~~~ai~~aL 451 (557)
++.+. . .+ .+....+|+.. . ..+. ..+ .....+++++|
T Consensus 166 ~~~~~---~--~~----~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L 236 (326)
T CHL00203 166 GASYE---N--SI----LGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAVIIKCL 236 (326)
T ss_pred EEcCC---C--Ce----EEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHHHHHHHHHH
Confidence 86432 1 11 11111111110 0 0000 011 12445799999
Q ss_pred HHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCC
Q 008700 452 AHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIH 526 (557)
Q Consensus 452 ~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lp 526 (557)
+++|++++|||++-.|..+... .+++.+.++-. ..+ ...-..+||+.+|+=...|..+ ++++.+.
T Consensus 237 ~~~g~~~~did~~~~hq~~~~~-----~~~~~~~lgl~~~k~--~~~l~~~Gn~~sasi~~~L~~~---~~~g~~~ 302 (326)
T CHL00203 237 NALNISIDEVDWFILHQANKRI-----LEAIANRLSVPNSKM--ITNLEKYGNTSAASIPLALDEA---IQNNKIQ 302 (326)
T ss_pred HHcCCCHHHCCEEEECCCCHHH-----HHHHHHHhCCCHHHh--hhHHHhhCcHHHHHHHHHHHHH---HHhCCCC
Confidence 9999999999999999766553 33455555532 112 1233578999887766555444 4566553
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=146.15 Aligned_cols=267 Identities=19% Similarity=0.244 Sum_probs=165.3
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
..+.|+|+|...|.- .+.+++.+.+......|. ...++..+ .+..+. .....|+.+|+
T Consensus 46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~-----~~tGi~~R-----------~~~~~~-----~~~~~La~~Aa 104 (379)
T PLN02326 46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIA-----TRTGIRNR-----------RVLSGD-----ETLTSLAVEAA 104 (379)
T ss_pred CCcEEEEEEEECCCceecHHHHHHhcCCchhhee-----cccCcceE-----------eecCCC-----CCHHHHHHHHH
Confidence 468899999999998 666776554321111110 00011000 001111 23578999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-Ceee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G-p~~t 322 (557)
++||+++|+++++|| -|++++..+.. .. ..+..+...+|+++ +.+.
T Consensus 105 ~~aL~~agi~~~dId-------~li~~s~~~~~-------------------------~~-~~a~~v~~~LG~~~~~~~d 151 (379)
T PLN02326 105 KKALEMAGVDPEDVD-------LVLLCTSSPDD-------------------------LF-GSAPQVQAALGCTNALAFD 151 (379)
T ss_pred HHHHHHcCCCHHHCC-------EEEEEeCCCCc-------------------------cC-cHHHHHHHHhCCCCCceee
Confidence 999999999998777 46666543110 01 13557888899865 7899
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+.+|++++.||..|.++|++|.++.+||+|.|.+... + .|+...+.+++||||+|+
T Consensus 152 v~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~s~~-----------~------------~~~d~~~~~lfGDGAaAv 208 (379)
T PLN02326 152 LTAACSGFVLGLVTAARFIRGGGYKNVLVIGADALSRY-----------V------------DWTDRGTCILFGDGAGAV 208 (379)
T ss_pred ccccchHHHHHHHHHHHHHHcCCCCEEEEEEechhcCC-----------C------------CccccCceEEEcceeEEE
Confidence 99999999999999999999999999999999973211 0 022234557899999999
Q ss_pred EEcchHHHHhcCCeeeEEEEEEEEecCCC-----------------------CCCCC---------CCCh--------HH
Q 008700 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAY-----------------------HMTEP---------HPDG--------VG 442 (557)
Q Consensus 403 vLe~~~~A~~~G~~i~a~I~G~~~~~d~~-----------------------~~~~~---------~p~~--------~~ 442 (557)
||++.+... ..+. ++...+++. ....+ ...+ ..
T Consensus 209 lL~~~~~~~---~~i~----~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 281 (379)
T PLN02326 209 VLQACDDDE---DGLL----GFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFKFAVRC 281 (379)
T ss_pred EEEEcCCCC---CceE----EEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHHHHHHHHH
Confidence 999754221 1111 111111110 00000 0111 12
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHHHHHHHH
Q 008700 443 VILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIR 521 (557)
Q Consensus 443 ~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~ 521 (557)
+.++++++|+++|++++|||+|..|..+.... +.+.+.++-.. .+. .. -..+||+.+|+=.+.|..+ ++
T Consensus 282 ~~~~i~~~L~~~gl~~~dId~~v~Hq~n~~~~-----~~~~~~Lgl~~ek~~-~~-l~~~GNt~sAsi~~~L~~~---~~ 351 (379)
T PLN02326 282 VPQVIESALQKAGLTAESIDWLLLHQANQRII-----DAVAQRLGIPPEKVI-SN-LANYGNTSAASIPLALDEA---VR 351 (379)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH-----HHHHHHcCCCHHHee-ec-HhhcCcHHHHHHHHHHHHH---HH
Confidence 33578899999999999999999997655532 33555555321 122 22 3578999988866666554 34
Q ss_pred cCCC
Q 008700 522 TGWI 525 (557)
Q Consensus 522 ~~~l 525 (557)
.+.+
T Consensus 352 ~g~~ 355 (379)
T PLN02326 352 SGKV 355 (379)
T ss_pred cCCC
Confidence 5544
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=141.85 Aligned_cols=265 Identities=19% Similarity=0.187 Sum_probs=166.9
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~e 245 (557)
|.|+++|...|.- .+.+++.+.+. ...+.. ..+...+ .+..+ -.....|+.+++++
T Consensus 2 v~I~~i~~~lP~~~v~~~~~~~~~~--~~~~~~-----~~gi~~r-----------~~~~~-----~~~~~~l~~~a~~~ 58 (324)
T cd00827 2 VGIEAIGAYLPRYRVDNEELAEGLG--VDPGKY-----TTGIGQR-----------HMAGD-----DEDVPTMAVEAARR 58 (324)
T ss_pred ccEEEEEecCCceeecHHHHHHHhC--CCccee-----eeeccee-----------EecCC-----CCCHHHHHHHHHHH
Confidence 6799999999987 67777765531 110000 0000000 00000 12246799999999
Q ss_pred HHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC-CCCeeeec
Q 008700 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW-MGPNYSIS 324 (557)
Q Consensus 246 ALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl-~Gp~~tv~ 324 (557)
||+++|+++++|| .|++|+..... .....+.+++..+|+ ..|.++|+
T Consensus 59 aL~~ag~~~~~Id-------~li~~~~~~~~-------------------------~~~~~~~~i~~~lg~~~~~~~~v~ 106 (324)
T cd00827 59 ALERAGIDPDDIG-------LLIVATESPID-------------------------KGKSAATYLAELLGLTNAEAFDLK 106 (324)
T ss_pred HHHHcCCCHHHCC-------EEEEEcCCCCC-------------------------CCccHHHHHHHHcCCCCCceeehh
Confidence 9999999998887 68887653110 122356788999999 56999999
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEEE
Q 008700 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (557)
Q Consensus 325 ~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalvL 404 (557)
.+|+|++.||..|.++|++|.++.+||+++|.+.... ...+.+++++|||++|+||
T Consensus 107 ~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~------------------------~~~~~~~~~~gdgaaA~ll 162 (324)
T cd00827 107 QACYGGTAALQLAANLVESGPWRYALVVASDIASYLL------------------------DEGSALEPTLGDGAAAMLV 162 (324)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhcc------------------------cCCCCccccccCceEEEEE
Confidence 9999999999999999999999999999999843221 1234578899999999999
Q ss_pred cchHHHHhcCCeeeEEEEEEEEecCCC---------CCCC-------------CCC--------ChHHHHHHHHHHHHHc
Q 008700 405 EELEHAKKRGAKIYAEFRGGSFTSDAY---------HMTE-------------PHP--------DGVGVILCIEKALAHS 454 (557)
Q Consensus 405 e~~~~A~~~G~~i~a~I~G~~~~~d~~---------~~~~-------------~~p--------~~~~~~~ai~~aL~~A 454 (557)
++.+... +..+. .....+++. .... .+. ....+..+++++|++.
T Consensus 163 ~~~~~~~--~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (324)
T cd00827 163 SRNPGIL--AAGIV----STHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDRA 236 (324)
T ss_pred ecCcccc--cCCce----eeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHHHHHHHHHHHc
Confidence 9765420 11222 111111110 0000 010 0234567889999999
Q ss_pred CCCCCCccEEEEcCCCC-ccCcHHHHHHHHHHhcCC-CCcccc--cCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 455 GVSREDVNYINAHATST-PAGDIKEYQALIHCFGQN-RGLRVN--STKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 455 gl~~~dId~ve~hgtgt-~~~D~~E~~Al~~~~~~~-~~~~v~--s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
|++ +||+++..|..+. ... +.+.+.++-. ..+... ..-..+||+.+|+-.+.+..+ ++++.+
T Consensus 237 ~~~-~~i~~~~~h~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~Gn~~sa~~~~~L~~~---~~~~~~ 302 (324)
T cd00827 237 GLS-EDIDYFVPHQPNGKKIL-----EAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLASL---LESGKL 302 (324)
T ss_pred ccc-cccceeeccCchHHHHH-----HHHHHHccchHhhhccchhhHHHHhCchHHHHHHHHHHHH---HhcCCC
Confidence 999 9999999997665 322 2222333211 111111 234568999888766666554 444443
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=135.91 Aligned_cols=266 Identities=17% Similarity=0.185 Sum_probs=160.1
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
.|-|+|+|...|.. .+.+++-+..-.....+. ...++..+ . +. ..-.....|+.+|++
T Consensus 4 ~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~-----~~~Gi~~r-----------~-~~----~~~~~~~~la~~Aa~ 62 (339)
T PRK06840 4 NVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVI-----EKFGIYEK-----------P-VP----GPEDHTSDMAIAAAK 62 (339)
T ss_pred ceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHh-----hhcCcceE-----------e-eC----CCCCCHHHHHHHHHH
Confidence 68999999999998 566765443211000000 00011000 0 11 111235789999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-Ceeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G-p~~tv 323 (557)
+||+++|+++++|| .+++.++.. +.......+.+++..+|++. +.+.|
T Consensus 63 ~aL~~ag~~~~dId-------~li~~~~~~------------------------~~~~~p~~a~~l~~~lGl~~~~~~~v 111 (339)
T PRK06840 63 PALKQAGVDPAAID-------VVIYIGSEH------------------------KDYPVWSSAPKIQHEIGAKNAWAFDI 111 (339)
T ss_pred HHHHHcCCCHHHCC-------EEEEeccCC------------------------CCCCCCchHHHHHHHhCCCCcccccc
Confidence 99999999998777 455443210 11111223578889999964 88889
Q ss_pred cCCChhHHHHHHHHHHHHHc-CCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc--eecCceE
Q 008700 324 STACATSNFCILNAANHIIR-GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF--VMGEGAG 400 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~-G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~--v~gEGAa 400 (557)
..+|++++.||..|.++|++ |.++.+||.+.|..... + .|+.....+ .+||||+
T Consensus 112 ~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~s~~-----------~------------~~~~~~~~~~~~~GDgAa 168 (339)
T PRK06840 112 MAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRNSDL-----------V------------DYDNPRTRFMFNFAAGGS 168 (339)
T ss_pred cccchHHHHHHHHHHHHHhcCCCccEEEEEeecccccc-----------c------------CcCCCCeeeeccCCCcee
Confidence 99999999999999999999 99999999988862110 0 011112232 3699999
Q ss_pred EEEEcchHHHHhcCCeeeEEEEEEEEecCCCC-------------CCCC-------------CCC----------hHHHH
Q 008700 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH-------------MTEP-------------HPD----------GVGVI 444 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~-------------~~~~-------------~p~----------~~~~~ 444 (557)
|+||++.+. +..+ .+....+++.. ...+ .+. .....
T Consensus 169 A~ll~~~~~----~~~i----l~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (339)
T PRK06840 169 AALLKKDAG----KNRI----LGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDEVSIPNFL 240 (339)
T ss_pred EEEEEecCC----CCce----EEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHhhHHHHHH
Confidence 999986432 1222 22222222110 0000 000 01245
Q ss_pred HHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 445 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 445 ~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
++++++|+++|++++|||++-.|-.+... .+.+.+.++-.. +.. ....+||+.+|+=.+.|... ++.+
T Consensus 241 ~~i~~~L~~~gl~~~did~~~~h~~~~~~-----~~~~~~~Lgl~~~~~~---~~~~~Gn~~sas~~~~L~~~---~~~~ 309 (339)
T PRK06840 241 KVIREALRKSGYTPKDIDYLAILHMKRSA-----HIALLEGLGLTEEQAI---YLDEYGHLGQLDQILSLHLA---LEQG 309 (339)
T ss_pred HHHHHHHHHcCCCHHHCCEEEECCcCHHH-----HHHHHHHcCCCHHHeE---eHHhccchhhhhHHHHHHHH---HHcC
Confidence 78999999999999999999888554332 234555554321 121 24578999888766666544 3455
Q ss_pred CC
Q 008700 524 WI 525 (557)
Q Consensus 524 ~l 525 (557)
.+
T Consensus 310 ~~ 311 (339)
T PRK06840 310 KL 311 (339)
T ss_pred CC
Confidence 44
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=136.66 Aligned_cols=212 Identities=20% Similarity=0.223 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+++|+++||+++|+++++|| .+++++..+. ...+..+..+...+
T Consensus 50 ~~~la~~Aa~~aL~~agl~~~dID-------~li~~s~~~~-------------------------~~~p~~a~~v~~~L 97 (345)
T TIGR00748 50 TATIGVEAARNALKRAKIDPKDIG-------AVYVGSESHP-------------------------YAVKPTATIVAEAI 97 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCCC-------------------------ccccchHHHHHHHc
Confidence 468999999999999999998887 6777764321 11122356788899
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCC
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG 392 (557)
|+. -+.+.|..+|+++..||..|..+|++|.++.+||.+.|.+.. +|.. ..-
T Consensus 98 Gl~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~~------------------~~~~--------~~~ 151 (345)
T TIGR00748 98 GATPDLTAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQG------------------APGD--------ALE 151 (345)
T ss_pred CCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeccc------------------CCCc--------cCc
Confidence 985 378999999999999999999999999999999999997420 0111 112
Q ss_pred ceecCceEEEEEcchHHHHhcCCeeeEEEEEEE-EecCCCC---C-CCCCC------C-----hHHHHHHHHHHHHHcCC
Q 008700 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS-FTSDAYH---M-TEPHP------D-----GVGVILCIEKALAHSGV 456 (557)
Q Consensus 393 ~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~-~~~d~~~---~-~~~~p------~-----~~~~~~ai~~aL~~Agl 456 (557)
+..||||+|+||++.+. ...+.+.. ...|... . ..+.+ . ......+++++|+++|+
T Consensus 152 ~~~GDGAaA~vl~~~~~--------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl 223 (345)
T TIGR00748 152 YTAGAGGAAYIIGEKNT--------VAYFEGTYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKLGL 223 (345)
T ss_pred ccCCCceEEEEEccCCc--------ceEeecccceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999986331 11222211 1111110 0 00000 0 12233678899999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHH
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~ 517 (557)
+++|||++..|..+..+. +.+.+.++-. ..+..+-.-..+||+.+|+=.+.|...+
T Consensus 224 ~~~did~~i~Hq~~~~~~-----~~~~~~lgl~~ek~~~~~~~~~~GNt~sAsipl~L~~~~ 280 (345)
T TIGR00748 224 TPEDFDYAVFHQPNGKFY-----LVAARMLGFPKEQVKPGLLTPRIGNTYSGATPVGLSAVL 280 (345)
T ss_pred CHHHcCEEEeCCCChHHH-----HHHHHHcCCCHHHeeccccccccCchhhhHHHHHHHHHH
Confidence 999999999996655432 2344444422 1121111124689999888777776654
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=137.25 Aligned_cols=259 Identities=18% Similarity=0.207 Sum_probs=160.7
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~e 245 (557)
|-|+|+|...|.- .+.+++-+.+-.....|.+ ..+...+ .+.++ -.....|+.+|+++
T Consensus 3 v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~-----~~Gi~~R-----------~~~~~-----~~~~~~la~~Aa~~ 61 (347)
T PRK04262 3 VGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKR-----GLGVEEK-----------SVPGP-----DEDTATIAVEAARN 61 (347)
T ss_pred eeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhh-----ccCeeee-----------ecCCC-----CcCHHHHHHHHHHH
Confidence 7799999999998 6777776554111000000 0011000 00111 12346899999999
Q ss_pred HHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC--Ceeee
Q 008700 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PNYSI 323 (557)
Q Consensus 246 ALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G--p~~tv 323 (557)
||+++|+++++|| .+++++..+. ......+.++...+|+.. +.+.+
T Consensus 62 aL~~ag~~~~dId-------~li~~s~~~~-------------------------~~~p~~a~~v~~~Lgl~~~~~~~dv 109 (347)
T PRK04262 62 ALKRAGIDPKEIG-------AVYVGSESHP-------------------------YAVKPTATIVAEALGATPDLTAADL 109 (347)
T ss_pred HHHHcCCCHHHCC-------EEEEEecCCC-------------------------cccccHHHHHHHHcCCCCCceEEEH
Confidence 9999999998787 6777764321 111223557888899964 77889
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+.+|++++.+|+.|..+|++|.++.+||.+.|.... +|... + -+..||||+|+|
T Consensus 110 ~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~~~~------------------~~~~~---~-----~~~~GDGA~A~l 163 (347)
T PRK04262 110 EFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQG------------------APGDA---L-----EYTAAAGGAAFI 163 (347)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeecc------------------CCCCC---C-----CCcCCCCcEEEE
Confidence 999999999999999999999999999999997210 01110 1 133599999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEE-EecCCCCCC----C--C----CCC-----hHHHHHHHHHHHHHcCCCCCCccEEEEc
Q 008700 404 LEELEHAKKRGAKIYAEFRGGS-FTSDAYHMT----E--P----HPD-----GVGVILCIEKALAHSGVSREDVNYINAH 467 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~-~~~d~~~~~----~--~----~p~-----~~~~~~ai~~aL~~Agl~~~dId~ve~h 467 (557)
|++.+. ..+|.+.. ...|..... . + ... ......+++++|+++|++++|||++-.|
T Consensus 164 l~~~~~--------~~~i~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~dId~~v~H 235 (347)
T PRK04262 164 IGKEEV--------IAEIEATYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLGLKPSDYDYAVFH 235 (347)
T ss_pred EecCcc--------cceeeccccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHHhCcCHHHhceeecC
Confidence 986321 12233321 111211000 0 1 000 1345678999999999999999999999
Q ss_pred CCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHH
Q 008700 468 ATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 468 gtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~ 517 (557)
..+....+ .+.+.++-. ..+..+-.-..+||+.+|+=.+.|..++
T Consensus 236 q~n~~~~~-----~~~~~Lgl~~ek~~~~~~~~~~GNt~sAsi~~~L~~~~ 281 (347)
T PRK04262 236 QPNGKFPL-----RVAKMLGFTKEQVKPGLLTPYIGNTYSGSALLGLAAVL 281 (347)
T ss_pred CCchHHHH-----HHHHHcCCCHHHhhccchhhhhCChHHHHHHHHHHHHH
Confidence 65555432 333334422 1122111236789999998777776654
|
|
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-12 Score=129.64 Aligned_cols=256 Identities=18% Similarity=0.252 Sum_probs=156.1
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCC--CCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETF--DCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTA 242 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~--~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~a 242 (557)
.+.|+|+|...|.- .+.+++.+.+ |.+ +.+ +..++..+ .+..+. .....|+.+|
T Consensus 3 ~~~I~~~g~~lP~~~v~~~~~~~~~--~~~-----~~~i~~~~Gi~~r-----------~~~~~~-----e~~~~la~~A 59 (326)
T PRK05963 3 SSRIAGFGHAVPDRRVENAEIEAQL--GLE-----TGWIERRTGIRCR-----------RWAAPD-----ETLSDLAASA 59 (326)
T ss_pred ccEEEEEEEECCCCeecHHHHHHHc--CCC-----HHHhhhccCCeEE-----------EEcCCC-----CCHHHHHHHH
Confidence 47899999999998 5667765543 111 000 00011000 001111 2246899999
Q ss_pred HHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-CCee
Q 008700 243 GKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNY 321 (557)
Q Consensus 243 a~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~-Gp~~ 321 (557)
+++||+++|+++++|| -|++++... ....+..+.+|...+|+. .+++
T Consensus 60 a~~aL~~ag~~~~~Id-------~li~~t~~~-------------------------d~~~p~~a~~v~~~Lg~~~~~~~ 107 (326)
T PRK05963 60 GDMALSDAGIERSDIA-------LTLLATSTP-------------------------DHLLPPSAPLLAHRLGLQNSGAI 107 (326)
T ss_pred HHHHHHHcCCCHHHCC-------EEEEECCCC-------------------------CCCCCcHHHHHHHHhCCCCCcee
Confidence 9999999999998887 577776531 112233567899999995 4889
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
.|..+|++++.||..|..+|+.|. +.+||.++|.... .+. + +....++++||||+|
T Consensus 108 di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~s~-----------~~~-----~-------~~~~~~~lfGDgA~A 163 (326)
T PRK05963 108 DLAGACAGFLYALVLADGFVRAQG-KPVLVVAANILSR-----------RIN-----M-------AERASAVLFADAAGA 163 (326)
T ss_pred eccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechhhc-----------cCC-----c-------cccCceEEEeecceE
Confidence 999999999999999999999985 8899999887310 011 1 112346789999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEecCCCC----------CCCC--------C-----CC--------hHHHHHHHHHH
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYH----------MTEP--------H-----PD--------GVGVILCIEKA 450 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~----------~~~~--------~-----p~--------~~~~~~ai~~a 450 (557)
+||++.+.. ...+ .+....+++.. ...| . .+ ...+.++++++
T Consensus 164 ~ll~~~~~~---~~~~----l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (326)
T PRK05963 164 VVLAPSAKA---NSGV----LGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMSGASQNV 236 (326)
T ss_pred EEEEecCCC---CCce----EEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHHHHHHHH
Confidence 999864321 0111 11111111100 0000 0 01 12345678899
Q ss_pred HHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHH
Q 008700 451 LAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEA 513 (557)
Q Consensus 451 L~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~l 513 (557)
|+++|++++|||++..|-.+... .+.+.+.++-.... +...-..+||+.+|+=.+.|
T Consensus 237 L~~~gl~~~did~~~~h~~~~~~-----~~~~~~~l~l~~~k-~~~~l~~~Gn~~sas~~~~L 293 (326)
T PRK05963 237 LASAAMTPQDIDRFFPHQANARI-----VDKVCETIGIPRAK-AASTLETYGNSSAATIPLSL 293 (326)
T ss_pred HHHcCCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCCHHH-hhhhHHhhCcHHHHHHHHHH
Confidence 99999999999999999655442 23344444422111 11222568998766655544
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-13 Score=145.80 Aligned_cols=59 Identities=29% Similarity=0.377 Sum_probs=52.7
Q ss_pred cchhHHHHHHhhCCCC--CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchh
Q 008700 303 TNMGSAMLAMDLGWMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPI 361 (557)
Q Consensus 303 ~n~~a~~ia~~lgl~G--p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~ 361 (557)
...++..++...|+.. |.++|+.+|+||+.|+..|+++|++|++|++|+||+|.|.+..
T Consensus 66 ~~~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~ 126 (392)
T COG0183 66 GQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAP 126 (392)
T ss_pred cccHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCC
Confidence 3456778899999975 9999999999999999999999999999999999999876543
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-11 Score=128.79 Aligned_cols=267 Identities=13% Similarity=0.072 Sum_probs=160.0
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
..+.|+|+|...|.- .+.+++...+.. .+......-++..+...+. +..+ -.....|+.+|+
T Consensus 6 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~-~~~~~~~~i~~~~Gi~~R~-----------~~~~-----~e~~~~la~~Aa 68 (353)
T PRK12880 6 DKAKISGICVSVPEHKICIDDELESVFS-NDIKTLKRMKKVIGLNTRY-----------ICDE-----NTCVSDLGKHAA 68 (353)
T ss_pred cccEEEEEEEECCCeEecHHHHHHHhcC-cchhhhhhhhhccCceEEE-----------eCCC-----CCCHHHHHHHHH
Confidence 457899999999998 566655544431 1110000000001111111 0111 113578999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC--CCee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM--GPNY 321 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~--Gp~~ 321 (557)
++||+++|+++++|| .|++++.. +....+..+.++...||++ .+.+
T Consensus 69 ~~aL~~a~~~~~dId-------~lI~~t~t-------------------------~d~~~P~~a~~v~~~Lg~~~~~~~~ 116 (353)
T PRK12880 69 NTLLQGLNIDKNSLD-------ALIVVTQS-------------------------PDFFMPSTACYLHQLLNLSSKTIAF 116 (353)
T ss_pred HHHHHHcCCCHHHCC-------EEEEEcCC-------------------------CCCCCCcHHHHHHHHhCCCCCceEE
Confidence 999999999998887 57777654 2334456788999999995 3789
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
.|..+|++++.+|..|..+|++|..+ +||.+.|..... +. + +......++||||+|
T Consensus 117 di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~S~~-----------~~-----~-------~d~~~~~lFGDGAaA 172 (353)
T PRK12880 117 DLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTLSKF-----------IH-----P-------KNMNLAPIFGDGVSA 172 (353)
T ss_pred ehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhhhcc-----------CC-----c-------ccCCceeeecccceE
Confidence 99999999999999999999999999 888888862110 10 1 111224678999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEec------CCCC--CCC-------------------CCCChH--------HHHHH
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTS------DAYH--MTE-------------------PHPDGV--------GVILC 446 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~------d~~~--~~~-------------------~~p~~~--------~~~~a 446 (557)
+||++.+.. .+ + ..+...+... .+.+ ... ...++. ....+
T Consensus 173 ~vl~~~~~~--~~--~-~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 247 (353)
T PRK12880 173 TLIEKTDFN--EA--F-FELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGANIFNMALECEPKS 247 (353)
T ss_pred EEEEecCCC--Cc--e-EEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEEcCHHHHHHHHHHHHHH
Confidence 999864321 11 1 1111111000 0000 000 001111 22468
Q ss_pred HHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHH
Q 008700 447 IEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIA 515 (557)
Q Consensus 447 i~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~ 515 (557)
++++|+++|++++|||++..|-.+-. -.+.+.+.++-.. ++ +..+-..+|++.+|+=...|-.
T Consensus 248 i~~~L~~~gl~~~did~~v~HQ~~~~-----i~~~i~~~Lgl~~ek~-~~~~l~~~GNtssasip~~L~~ 311 (353)
T PRK12880 248 FKEILEFSKVDEKDIAFHLFHQSNAY-----LVDCIKEELKLNDDKV-PNFIMEKYANLSACSLPALLCE 311 (353)
T ss_pred HHHHHHHcCCCHHHCCEEEECCCCHH-----HHHHHHHHhCCCHHHh-hhhhHHhhCCHHHHHHHHHHHH
Confidence 89999999999999999999954444 3456666665321 12 1112245788776664444443
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-11 Score=126.81 Aligned_cols=292 Identities=13% Similarity=0.130 Sum_probs=168.0
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHH---cC--CCccee-cc-CCCCCCCCcccccc----ccCCCCCC--C----CCh
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLL---EG--VSGISE-IE-TFDCTSFPTKIAAE----IKSFSTDG--W----VAP 226 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~---~G--~~~i~~-~~-~~~~~~~~~~~~g~----i~~fd~~~--~----i~p 226 (557)
.+..|.|+|..+|.- ...+++.+.+. +. ...+.. +. -++..+...+.... ++.+ ++. . +..
T Consensus 15 ~~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~-~~~~~~~~p~~~~ 93 (393)
T PLN03172 15 GPATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKEN-PNMCAYMAPSLDA 93 (393)
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhC-ccccccCCCCHHH
Confidence 458899999999987 56666555544 21 111111 10 12233333332211 1111 111 1 122
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchh
Q 008700 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306 (557)
Q Consensus 227 ~~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~ 306 (557)
+....+.-...|+.+|+++||+++|+++++|| -+++.++.+ ...+..
T Consensus 94 r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId-------~ii~~t~t~--------------------------~~~P~~ 140 (393)
T PLN03172 94 RQDMVVVEVPKLGKEAAAKAIKEWGQPKSKIT-------HLVFCTTSG--------------------------VDMPGA 140 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEccCC--------------------------CcCchH
Confidence 22233334457999999999999999998777 466666532 012346
Q ss_pred HHHHHHhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCC
Q 008700 307 SAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383 (557)
Q Consensus 307 a~~ia~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~ 383 (557)
+.++...||++.- .+.+..+|++++.+|..|.+.++++....+||.++|.+.... . . ++..
T Consensus 141 a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~--~--------~-----~~d~- 204 (393)
T PLN03172 141 DYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITAVTF--R--------G-----PSDT- 204 (393)
T ss_pred HHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhhh--c--------c-----cccc-
Confidence 7889999999763 356789999999999999999999999999999999843100 0 0 0000
Q ss_pred CCCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEE----ecCCC----------CC--CCCCC--ChHHHHH
Q 008700 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF----TSDAY----------HM--TEPHP--DGVGVIL 445 (557)
Q Consensus 384 rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~----~~d~~----------~~--~~~~p--~~~~~~~ 445 (557)
-.+.--...++||||+|+||+..+... .....+ +|.+... .+++. +. ....| -...+..
T Consensus 205 -~~~~~v~~~LFGDGAaAvVl~~~~~~~-~~~~~~-~i~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~ 281 (393)
T PLN03172 205 -HLDSLVGQALFGDGAAAVIIGADPDTK-IERPLF-EIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEK 281 (393)
T ss_pred -cHHhhhccchhcCceEEEEEecCCCCc-ccCcee-EEeeeccEEecCCcccccceEEcCCcEEEEechHHHHHHHHHHH
Confidence 000001246789999999998743211 011112 3333321 11111 00 00011 1234556
Q ss_pred HHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Cccc-ccCcccccchhhhHHHHHHH
Q 008700 446 CIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRV-NSTKSMIGHLLGAAGAVEAI 514 (557)
Q Consensus 446 ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v-~s~K~~iGH~~gAaG~~~li 514 (557)
.+++.|++.|++..||+++-+|--|-. -++++.+.++-.. .+.. ..+-..+|++.+|+=..-|-
T Consensus 282 ~~~~~L~~~gl~~~di~~~~~Hqgg~~-----Il~~v~~~Lgl~~~~~~~s~~vl~~yGNtSSaSv~~vL~ 347 (393)
T PLN03172 282 SLVEAFAPIGINDWNSIFWIAHPGGPA-----ILDQVEIKLDLKEEKLRATRHVLSDYGNMSSACVLFILD 347 (393)
T ss_pred HHHHHhhhcCCCccccceEEecCCcHH-----HHHHHHHHcCCCHHHHHHHHHHHHHhCccHHhHHHHHHH
Confidence 788899999999999999999955544 3456666665321 1111 01234568877766444443
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=129.09 Aligned_cols=233 Identities=14% Similarity=0.181 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHH
Q 008700 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (557)
Q Consensus 232 md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia 311 (557)
......|+.+|+++||+++|+++++|| .|+++++.+ ...+..+.+|.
T Consensus 82 ~~~~~~la~~Aa~~aL~~a~~~~~~Id-------~li~~s~~~--------------------------~~~P~~a~~i~ 128 (361)
T cd00831 82 LEEARELAEEAARGALDEAGLRPSDID-------HLVVNTSTG--------------------------NPTPSLDAMLI 128 (361)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHCC-------EEEEECCCC--------------------------CCCCCHHHHHH
Confidence 344678999999999999999998777 567766431 12344567899
Q ss_pred HhhCCCC--Ceeeec-CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 312 MDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 312 ~~lgl~G--p~~tv~-~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
..+|++. +.+.|. .+|++++.||..|..+|++|..+.+||.++|.+.... . ++. ..+.
T Consensus 129 ~~lgl~~~~~~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~~~-----------~-----~~d---~~~~ 189 (361)
T cd00831 129 NRLGLRPDVKRYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSLWY-----------R-----GPD---HRSM 189 (361)
T ss_pred HHhCCCcccchhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeeccccee-----------C-----CCC---cHHH
Confidence 9999963 678898 8999999999999999999999999999999743210 0 000 0000
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEe--------------cCCCCCCC-C-CCC--hHHHHHHHHHH
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT--------------SDAYHMTE-P-HPD--GVGVILCIEKA 450 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~--------------~d~~~~~~-~-~p~--~~~~~~ai~~a 450 (557)
.-..+++||||+|+||++.+.... .......+.+.... ..+.+... + .+. .....++++++
T Consensus 190 ~~~~~lfGDgaaA~ll~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~ 268 (361)
T cd00831 190 LVGNALFGDGAAAVLLSNDPRDRR-RERPLFELVRAASTLLPDSEDAMGWHLGEEGLTFVLSRDVPRLVEKNLERVLRKL 268 (361)
T ss_pred hhhhhhccCCceEEEEEcCCCccc-ccccceeeecccceeeecCCCceEEEEEcceEEEEeChhHHHHHHHHHHHHHHHH
Confidence 002567899999999997654310 00111122221110 00000000 0 000 23456689999
Q ss_pred HHHc--CCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Cccc-ccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 451 LAHS--GVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRV-NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 451 L~~A--gl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v-~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
|+++ |++++|||++-.|-.+.... +.+.+.++-.. .+.. ...-..+||+.+|+=.+.|..+ ++++.+
T Consensus 269 L~~~~~g~~~~did~~~~H~~~~~i~-----~~v~~~lgl~~~~~~~s~~~l~~~GN~~sasi~~~L~~~---~~~g~~ 339 (361)
T cd00831 269 LARLGIGLFKLAFDHWCVHPGGRAVL-----DAVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVLAYM---EAKGRV 339 (361)
T ss_pred hccccCCCccccceEEEECCCChHHH-----HHHHHHcCCCHHHHHHHHHHHHHhCCchhccHHHHHHHH---HHhCCC
Confidence 9999 99999999999997655532 34555555321 1110 1233468999888766655554 345544
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=123.77 Aligned_cols=230 Identities=19% Similarity=0.154 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||++||+++++|| .+|+|... . ....+..++..+
T Consensus 50 e~eLa~eAa~~ALekAGL~~~DID-------~IIvGdl~--------------------------~--Q~~~As~vA~~L 94 (327)
T TIGR02845 50 ERKLMEDAVNLALKKANLKKDDVD-------FFLAGDLL--------------------------N--QIITANFVARDL 94 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEeCCC--------------------------C--cccHHHHHHHHh
Confidence 457999999999999999998887 57777421 0 012466788888
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
|+ |.+.|.++|+|++.||..|..+|++|.+|.+||++.+...+.+... +...+ .+.. +......
T Consensus 95 GI--P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErqf-----r~p~e-----yg~q----~~~ta~~ 158 (327)
T TIGR02845 95 GI--PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQF-----RYPTE-----YGVQ----KPPTAQW 158 (327)
T ss_pred CC--CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhhc-----ccccc-----cccC----CCCeeeE
Confidence 86 8899999999999999999999999999999999999855443221 11100 0111 2245567
Q ss_pred ecCceEEEEEcchHHHHhcCCeee----EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 008700 395 MGEGAGVLLLEELEHAKKRGAKIY----AEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATS 470 (557)
Q Consensus 395 ~gEGAaalvLe~~~~A~~~G~~i~----a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtg 470 (557)
+++||||+||++.+ .+.+|- ++|..+++. |+..+.. .+.++....|.+-+++.|.+|+|.|.|..-+.|
T Consensus 159 tgdGAGA~vl~~~~----~~~~i~~~t~gkv~d~g~~-d~~nmga--amapaa~dti~~h~~d~~~~~~~yd~i~tgdlg 231 (327)
T TIGR02845 159 TVTGAGAVLLASTG----GGPRITSATIGKVVDYGIT-DPLDMGA--AMAPAAADTIEAHFKDTGRSVDDYDLIVTGDLA 231 (327)
T ss_pred EEcccEEEEEeecC----CCCceEEEEEEEEEecCCC-Ccccchh--hhhHHHHHHHHHHHHHcCCChhhccEEEecchH
Confidence 89999999998743 233332 333333332 2222211 123456778999999999999999999875444
Q ss_pred CccCcHHHHHHHHHHhcCC--------CCc--ccccCcccc---cchhhhHHHHHHHHHHHHHHcCCCCC
Q 008700 471 TPAGDIKEYQALIHCFGQN--------RGL--RVNSTKSMI---GHLLGAAGAVEAIAVVQAIRTGWIHP 527 (557)
Q Consensus 471 t~~~D~~E~~Al~~~~~~~--------~~~--~v~s~K~~i---GH~~gAaG~~~li~~~~~l~~~~lpp 527 (557)
.. | .+-+.+++.++ ..| .+.-....+ |---|.|.++-.-..+..|++|.+-.
T Consensus 232 ~v-g----~~i~~~ll~~~g~~~~~~~~dcg~~iy~~~~~~~aggsgc~csa~v~~~~~~~~~~~g~~~r 296 (327)
T TIGR02845 232 RV-G----SEILRKLLKERGYDVTERYDDCGVMIYRPDQQVFAGGSGCACSAVVTYGHILKEMLRGKLKK 296 (327)
T ss_pred HH-H----HHHHHHHHHHcCCChhhccccCCeEEEcCCCcccCCCcccchhHHHHHHHHHHHHhcCcceE
Confidence 33 1 22233333211 011 111111111 22334555666667788888887643
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=123.98 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 233 d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
+....|+.+|+++||+++|+++++|| -|++++..+ .. .+..+..+..
T Consensus 106 ~~a~~la~~Aa~~aL~~ag~~~~dId-------~li~~t~t~-------------------------~~-~P~~a~~v~~ 152 (399)
T PLN03171 106 DAVPELAAEAAKKAIAEWGRPAADIT-------HLVVTTNSG-------------------------AH-IPGVDFRLVP 152 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEcCCC-------------------------CC-CCchHHHHHH
Confidence 34557999999999999999998887 577776532 11 2345778999
Q ss_pred hhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCC
Q 008700 313 DLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (557)
Q Consensus 313 ~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~ 389 (557)
.||++.- .+.+..+|++++.+|..|.++|++|....|||.++|.+..-. . +.... .++..
T Consensus 153 ~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s~~~-----------~-----~~d~~-~~~~~ 215 (399)
T PLN03171 153 LLGLRPSVRRTMLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITLLLF-----------N-----GPDEG-CFQTL 215 (399)
T ss_pred HhCCCcccceeeccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEecccccc-----------C-----CCCcc-cHHhh
Confidence 9999642 456677999999999999999999999999999999832110 0 00000 01111
Q ss_pred CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCC--------------CCCCC-CCChHHHHHHHHHHHHH-
Q 008700 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY--------------HMTEP-HPDGVGVILCIEKALAH- 453 (557)
Q Consensus 390 ~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~--------------~~~~~-~p~~~~~~~ai~~aL~~- 453 (557)
-.+.++||||+|+||++.+...+++ +..|.......++. ..... ..-...+.+.+++++++
T Consensus 216 v~~~LFGDGAaA~vl~~~~~~~~~~---~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~vp~~i~~~l~~~l~~~ 292 (399)
T PLN03171 216 LNQGLFGDGAAAVIVGADADAAERP---LFEIVSAAQAIIPESDDAINMHFTEGGLDGNIGTRQVPGLIGDNIERCLLDA 292 (399)
T ss_pred hccccccCccEEEEEecCCCCCCCC---ceEEEEeeeEEecCCchheEEEEEcCCceEEECchhHHHHHHHHHHHHHHHH
Confidence 1367899999999999754321111 12333222211111 00000 00112333444666654
Q ss_pred --------cCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Ccccc-cCcccccchhhhHHHHHHHHH
Q 008700 454 --------SGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVN-STKSMIGHLLGAAGAVEAIAV 516 (557)
Q Consensus 454 --------Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~-s~K~~iGH~~gAaG~~~li~~ 516 (557)
+|++++||+++ +|-.+-. -++.+.+.++-.. .+..+ .+-..+|++.+|+=...|-..
T Consensus 293 l~~~~~~~~g~~~~di~~~-~Hq~~~~-----il~~v~~~Lgl~~ek~~~s~~~l~~yGNtssaSip~~L~~~ 359 (399)
T PLN03171 293 FAPLLGGDGGAEWNDLFWA-VHPGSSA-----ILDQVDAALGLEPEKLAASRRVLSDYGNMFGATVIFALDEL 359 (399)
T ss_pred HHhhcccccCCCcccceEE-EcCCcHH-----HHHHHHHHcCCCHHHhHHHHHHHHHhCcchhhhHHHHHHHH
Confidence 58889999998 6954443 3445555555321 11110 123457888876644444443
|
|
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-11 Score=124.66 Aligned_cols=222 Identities=13% Similarity=0.094 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .|++++.. ....+..+..+...|
T Consensus 106 ~~~La~~Aa~~aL~~ag~~~~dId-------~lI~~t~t--------------------------~~~~P~~a~~l~~~L 152 (391)
T PLN03169 106 VTQMAVEASLACIKEWGRPVSDIT-------HLVYVSSS--------------------------EARLPGGDLYLAKQL 152 (391)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCC-------EEEEECcC--------------------------CCCCCcHHHHHHHHh
Confidence 457999999999999999998887 56666542 122334577899999
Q ss_pred CCCC---CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCC
Q 008700 315 GWMG---PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (557)
Q Consensus 315 gl~G---p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~d 391 (557)
|++. ..+.+..+|++++.+|..|..+|++|..+.|||.++|....- +. . +.. .+ ++....
T Consensus 153 Gl~~~~~~~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~s~~-----~~---~-------~~~-~~-~~d~~~ 215 (391)
T PLN03169 153 GLSPDVQRVMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETTILG-----FR---P-------PSP-DR-PYDLVG 215 (391)
T ss_pred CcCCcceeeecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcChhh-----cc---C-------CCc-cc-hhhhhh
Confidence 9964 257889999999999999999999999999999999983110 00 0 000 01 112223
Q ss_pred CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEE--ecCCC-CC-------------CCCCC--ChHHHHHHHHHHHHH
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF--TSDAY-HM-------------TEPHP--DGVGVILCIEKALAH 453 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~--~~d~~-~~-------------~~~~p--~~~~~~~ai~~aL~~ 453 (557)
..++||||+|+||+..+... ....++ .+...+. ..+.. .+ ....| -...+..+++++|++
T Consensus 216 ~~lFGDGAaA~vl~~~~~~~-~~~~~~-~l~~~~~~~ip~~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~~L~~ 293 (391)
T PLN03169 216 AALFGDGAAAVIIGADPIPV-SESPFF-ELHTAIQQFLPGTEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCKKLMKK 293 (391)
T ss_pred hhhccCceEEEEEecCCCcc-cCCcce-EEEeeeeeEcCCCccccCceecCCceEEEECcHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999998644321 011121 2221111 00000 00 00000 123445678999999
Q ss_pred cCCCCCCcc--EEEEcCCCCccCcHHHHHHHHHHhcCCC-Ccccc-cCcccccchhhhHHHHHH
Q 008700 454 SGVSREDVN--YINAHATSTPAGDIKEYQALIHCFGQNR-GLRVN-STKSMIGHLLGAAGAVEA 513 (557)
Q Consensus 454 Agl~~~dId--~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~-s~K~~iGH~~gAaG~~~l 513 (557)
+|++++||| ++-.|-.+.. -++++.+.++-.. .+..+ .+-..+||+.+|+=...|
T Consensus 294 ~gl~~~did~~~~v~Hq~n~~-----il~~v~~~Lgl~~ek~~~s~~~l~~~GNtsSasip~~L 352 (391)
T PLN03169 294 AGLVEKDYNDLFWAVHPGGPA-----ILNRLEKKLKLAPEKLECSRRALMDYGNVSSNTIVYVL 352 (391)
T ss_pred cCCCCCCCCcceEEecCCCHH-----HHHHHHHHcCCCHHHHHHHHHHHHHhCCchHhHHHHHH
Confidence 999999999 8888965533 3445555554221 11110 122357888777644444
|
|
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.1e-11 Score=126.51 Aligned_cols=295 Identities=14% Similarity=0.151 Sum_probs=170.0
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcC-----CCccee-cc-CCCCCCCCccccccc---cCCCCCCC--CChhhhcc
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEG-----VSGISE-IE-TFDCTSFPTKIAAEI---KSFSTDGW--VAPKLSKR 231 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G-----~~~i~~-~~-~~~~~~~~~~~~g~i---~~fd~~~~--i~p~~~~~ 231 (557)
.+..|.|+|..+|.- ...+++.+.+..- ...... +. -|+..+...++.... ...+++.. ..|.-..+
T Consensus 19 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 98 (401)
T PLN03170 19 GPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDAR 98 (401)
T ss_pred CCeEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHH
Confidence 447899999999987 5566655555431 111111 11 123333333322111 10111111 11222333
Q ss_pred CC----HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhH
Q 008700 232 MD----KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (557)
Q Consensus 232 md----~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a 307 (557)
++ -.-.|+.+|+++||+++|+++++|| -+++.++.+ ...+..+
T Consensus 99 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId-------~lI~~T~Tg--------------------------~~~Ps~a 145 (401)
T PLN03170 99 QDIVVVEVPKLGKAAAQKAIKEWGQPKSKIT-------HLVFCTTSG--------------------------VDMPGAD 145 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEccCC--------------------------CCCChHH
Confidence 33 3446999999999999999998777 466666431 1133467
Q ss_pred HHHHHhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCC
Q 008700 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (557)
Q Consensus 308 ~~ia~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~r 384 (557)
.+|...||++.- .+.+..+|++++.+|..|.+.++++....|||.++|.+..-. . +++. .+
T Consensus 146 ~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S~~~-----------~----~~~~-~~ 209 (401)
T PLN03170 146 YQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTF-----------R----GPSE-SH 209 (401)
T ss_pred HHHHHHhCcCcccHHHHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhcc-----------C----Cccc-ch
Confidence 889999999753 578999999999999999999999999999999999843110 0 0100 00
Q ss_pred CCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEe----c----------CCCCCC--C--CCCChHHHHHH
Q 008700 385 PWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT----S----------DAYHMT--E--PHPDGVGVILC 446 (557)
Q Consensus 385 pfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~----~----------d~~~~~--~--~~p~~~~~~~a 446 (557)
++..-...++||||+|+||+..+... ......++...... . ++.... . |..-...+...
T Consensus 210 -~~~~~~~~LFGDGAaAvVl~~~~~~~--~~~~~~~l~~~~~~~~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~ 286 (401)
T PLN03170 210 -LDSMVGQALFGDGAAAVIVGADPDER--VERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERS 286 (401)
T ss_pred -hhhhhhhhhhhceeEEEEEecCCccc--ccCCceEEeeccceEecCCcccccceEEcCCeEEEEehHHHHHHHHHHHHH
Confidence 11112245789999999998643210 01111123222110 0 111000 0 00112345568
Q ss_pred HHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Ccc-cccCcccccchhhhHHHHHHHHH
Q 008700 447 IEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLR-VNSTKSMIGHLLGAAGAVEAIAV 516 (557)
Q Consensus 447 i~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~-v~s~K~~iGH~~gAaG~~~li~~ 516 (557)
++++|+++|++++||+++-+|--+.. -++++.+.++-.. .+. ...+-..+||+.+|+=...|-+.
T Consensus 287 v~~~L~~~gl~~~di~~~v~Hqgg~~-----il~~v~~~Lgl~~~~~~~s~~~l~~~GNtsSasv~~vL~~~ 353 (401)
T PLN03170 287 LEEAFKPLGITDYNSIFWVAHPGGPA-----ILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEM 353 (401)
T ss_pred HHHHHHhcCCCccccCeEEecCCcHH-----HHHHHHHHcCCChHHHHHHHHHHHHhCccHHhHHHHHHHHH
Confidence 88999999999999999999955444 3445555555321 111 01233457888877755555444
|
|
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.1e-13 Score=127.33 Aligned_cols=248 Identities=21% Similarity=0.261 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC
Q 008700 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (557)
Q Consensus 237 rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl 316 (557)
.|+.++....|+.-.++.+.+| -++.|+.... --.+.++...+...|+
T Consensus 68 dlar~al~~ll~kt~lpke~~d-------yii~gtviqe-------------------------vktsniareaal~agf 115 (465)
T KOG1392|consen 68 DLAREALKALLEKTKLPKEQLD-------YIICGTVIQE-------------------------VKTSNIAREAALLAGF 115 (465)
T ss_pred HHHHHHHHHHHHhccCCHHHhc-------eeeehhhHHH-------------------------HhcchHHHHHHHhcCC
Confidence 3555666777888888887776 4777764211 1124456666777777
Q ss_pred --CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHH---------HHH---------------hh
Q 008700 317 --MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGG---------FVA---------------CR 370 (557)
Q Consensus 317 --~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~---------~~~---------------~~ 370 (557)
+-|..||..+|-|+.+|+..++-+|..|.||++++||+|.+.+...-.. +.+ ..
T Consensus 116 sdktpahtvtmacissn~amttgmgliatg~~dvivaggvelmsdvpirhsrkmrklml~~nkak~~gqrl~l~s~fr~n 195 (465)
T KOG1392|consen 116 SDKTPAHTVTMACISSNVAMTTGMGLIATGNADVIVAGGVELMSDVPIRHSRKMRKLMLGMNKAKDVGQRLKLGSQFRKN 195 (465)
T ss_pred CCCCccceeeeehhccchhhhccceeEeeCCcCEEEEcceeecccCchhhhHHHHHHhhccccccchhhhhhHHhhhhhh
Confidence 5699999999999999999999999999999999999998764322100 000 00
Q ss_pred hhhc-----------------------------c-------------------------------CCCC----CCCC---
Q 008700 371 ALSQ-----------------------------R-------------------------------NNDP----TKAS--- 383 (557)
Q Consensus 371 ~Ls~-----------------------------~-------------------------------~~~p----~~~~--- 383 (557)
.|+. . +.+| +...
T Consensus 196 flapelpavaefstgetmghsadrlaaafnvsr~eqdeyalrshtlakeaq~~g~ftdvvpfkv~gkd~~t~kdngirvs 275 (465)
T KOG1392|consen 196 FLAPELPAVAEFSTGETMGHSADRLAAAFNVSRREQDEYALRSHTLAKEAQKNGKFTDVVPFKVDGKDPKTIKDNGIRVS 275 (465)
T ss_pred ccCcCcchheeccccccccccHHHHHHHhccchhhhhHHHHhhhHHHHHHHhcCcccceeeEecCCCCcceecCCCcccC
Confidence 0000 0 0000 0000
Q ss_pred -------------CCCcC--CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEE-EecCCCCCCCCCCChHHHHHHH
Q 008700 384 -------------RPWDI--NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS-FTSDAYHMTEPHPDGVGVILCI 447 (557)
Q Consensus 384 -------------rpfd~--~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~-~~~d~~~~~~~~p~~~~~~~ai 447 (557)
+||.. .++...+.|||.+.++..+|.|++.|.++.+.++.+- +.+|......- +...+|
T Consensus 276 sle~laklkpafvkpygtvtaanasfltdgasa~limteekala~gykpkaylrdflyvsqdpkdqlll-----gpay~i 350 (465)
T KOG1392|consen 276 SLEKLAKLKPAFVKPYGTVTAANASFLTDGASAALIMTEEKALANGYKPKAYLRDFLYVSQDPKDQLLL-----GPAYVI 350 (465)
T ss_pred CHHHHhhcCchhccCcceeEecccchhcCcchhhhhhhHHHHHHcCCCchHHhhhheeeccCchhheec-----cccccc
Confidence 11111 1233346799999999999999999999999998874 45555433222 235789
Q ss_pred HHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHH-h-----cCC--------CCcccccCcccccchhhhHHHHHH
Q 008700 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHC-F-----GQN--------RGLRVNSTKSMIGHLLGAAGAVEA 513 (557)
Q Consensus 448 ~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~-~-----~~~--------~~~~v~s~K~~iGH~~gAaG~~~l 513 (557)
.+.|+++|++..|||.+|+|....-.- .....++..- | +.. ..++.++..-.|||++||+|+.-.
T Consensus 351 pkll~kagltlkdid~feiheafagqi-lanlkamdsdwfck~ymgr~~kvg~ppl~k~nnwggslsighpfgatgvrl~ 429 (465)
T KOG1392|consen 351 PKLLDKAGLTLKDIDVFEIHEAFAGQI-LANLKAMDSDWFCKEYMGRSGKVGRPPLDKLNNWGGSLSIGHPFGATGVRLA 429 (465)
T ss_pred HHHHHHcCCcccccchhhhHHHHhHHH-HhhhhhhcchHHHHHHhcccCccCCCChHHhcccCcceecCCcccccchhhH
Confidence 999999999999999999995432100 0011222111 1 211 124455666679999999999999
Q ss_pred HHHHHHHHc
Q 008700 514 IAVVQAIRT 522 (557)
Q Consensus 514 i~~~~~l~~ 522 (557)
..+..-|++
T Consensus 430 mh~anrl~~ 438 (465)
T KOG1392|consen 430 MHSANRLKE 438 (465)
T ss_pred HHHHhHHHh
Confidence 888888865
|
|
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=121.87 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=168.1
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCC-----Cccee-ccC-CCCCCCCccccccccC-CC--CCCC--CChhhhcc
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGV-----SGISE-IET-FDCTSFPTKIAAEIKS-FS--TDGW--VAPKLSKR 231 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~-----~~i~~-~~~-~~~~~~~~~~~g~i~~-fd--~~~~--i~p~~~~~ 231 (557)
.+..|.|+|..+|.- ...+++.+.+..-- ..... +.+ |+..+...+.....++ ++ +... ..|.-..+
T Consensus 15 ~~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r 94 (391)
T PLN03173 15 GPATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDAR 94 (391)
T ss_pred CCeEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHH
Confidence 457899999999987 55555555554311 11111 111 2223333332211000 00 0000 11222333
Q ss_pred CCH----HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhH
Q 008700 232 MDK----FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGS 307 (557)
Q Consensus 232 md~----~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a 307 (557)
++. ...|+.+|+.+||+++|+++++|| -|++.++.+ ...+..+
T Consensus 95 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId-------~li~~t~t~--------------------------~~~P~~a 141 (391)
T PLN03173 95 QDMVVVEVPKLGKEAAAKAIKEWGQPKSKIT-------HLVFCTTSG--------------------------VDMPGAD 141 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEccCC--------------------------CcccHHH
Confidence 333 447999999999999999998877 566666431 0123467
Q ss_pred HHHHHhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCC
Q 008700 308 AMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (557)
Q Consensus 308 ~~ia~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~r 384 (557)
.++...+|++.- .+.+..+|++++.+|..|.++++.+....|||.++|.+.... . . ++. +
T Consensus 142 ~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~--~--------~-----~~d--~ 204 (391)
T PLN03173 142 YQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTF--R--------G-----PSD--T 204 (391)
T ss_pred HHHHHHhCCCccceeeehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhhhhh--C--------C-----ccc--c
Confidence 889999999763 456899999999999999999999999999999999833110 0 0 000 0
Q ss_pred CCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEE----ecC----------CCC--CCCCCC--ChHHHHHH
Q 008700 385 PWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF----TSD----------AYH--MTEPHP--DGVGVILC 446 (557)
Q Consensus 385 pfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~----~~d----------~~~--~~~~~p--~~~~~~~a 446 (557)
..+..-...++||||+|+||+..+.. ....+.+ +|.+... .++ +.+ .....| -...+...
T Consensus 205 ~~~~~v~~~LFGDGAaAvvl~~~~~~-~~~~~~~-~l~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~~~~~ 282 (391)
T PLN03173 205 HLDSLVGQALFGDGAAAIIIGSDPVL-GVEKPLF-ELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNVEKS 282 (391)
T ss_pred chhhhhhhhhhcCceEEEEEeCCCCC-CcCCcce-EEEeeeeEEecCCccceeeEEEcCceEEEEecHHHHHHHHHHHHH
Confidence 00011124678999999999864321 0011111 2322211 111 111 110111 12345668
Q ss_pred HHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Cccc-ccCcccccchhhhHHHHHHHHH
Q 008700 447 IEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRV-NSTKSMIGHLLGAAGAVEAIAV 516 (557)
Q Consensus 447 i~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v-~s~K~~iGH~~gAaG~~~li~~ 516 (557)
++++|++.|++.+||+++-+|--|.. -++++.+.++-.. .+.. ..+-..+|++.+|+=..-|-+.
T Consensus 283 i~~~L~~~gl~~~di~~~v~Hqgg~~-----Il~~v~~~LgL~~ekl~~s~~vl~~yGNtSSaSv~~vL~~~ 349 (391)
T PLN03173 283 LTEAFKPLGISDWNSLFWIAHPGGPA-----ILDQVEAKLALKPEKLRATRHVLSEYGNMSSACVLFILDEM 349 (391)
T ss_pred HHHHHHhcCCCccccCeEEECCCcHH-----HHHHHHHHcCCChHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 89999999999999999999965544 3456666665321 1111 1233456888777644444443
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-10 Score=117.83 Aligned_cols=225 Identities=15% Similarity=0.158 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 233 d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
.-...|+.+|+++||+++|+++++|| .|+++++.+ ...+..+.+|..
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId-------~lI~~T~Tg--------------------------~~~Ps~a~~l~~ 145 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDIT-------HIVFATTSG--------------------------VNMPGADHALAK 145 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECCCC--------------------------CCCccHHHHHHH
Confidence 34457999999999999999998887 577777542 112446889999
Q ss_pred hhCCCC---CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCC
Q 008700 313 DLGWMG---PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (557)
Q Consensus 313 ~lgl~G---p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~ 389 (557)
.||++. ..+.+..+|++++.+|..|..+|++|....|||.++|.+..- +. .++. ...+..
T Consensus 146 ~LGl~~~~~r~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S~~-----~~----------~~~~--~~~~~~ 208 (389)
T PLN03168 146 LLGLKPTVKRVMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTAVT-----YR----------APSE--NHLDGL 208 (389)
T ss_pred HhCcCCcceeeeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhhhh-----cc----------Cccc--ccHHHH
Confidence 999975 268899999999999999999999999999999999984211 00 0000 001111
Q ss_pred CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEE-Ee--cCCC---CCCC-----------CCCChHHHHHHHHHHHH
Q 008700 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS-FT--SDAY---HMTE-----------PHPDGVGVILCIEKALA 452 (557)
Q Consensus 390 ~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~-~~--~d~~---~~~~-----------~~p~~~~~~~ai~~aL~ 452 (557)
-...++||||+|+||+..+... ....++....... .. +++. .... |..-...+...++++|+
T Consensus 209 ~~~~LFGDGAaAvvl~~~~~~~-~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~~l~ 287 (389)
T PLN03168 209 VGSALFGDGAGVYVVGSDPKPE-VEKALFEVHWAGETILPESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNEARK 287 (389)
T ss_pred hccccccCccEEEEEecCCCCc-cCCcceEEEeeeeEEEcCCCCccCceEecCceEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 2356789999999999643211 0112222222111 00 1111 0000 00012234566777888
Q ss_pred HcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Cccc-ccCcccccchhhhHHHHHH
Q 008700 453 HSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRV-NSTKSMIGHLLGAAGAVEA 513 (557)
Q Consensus 453 ~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v-~s~K~~iGH~~gAaG~~~l 513 (557)
..|+...|++++-+|--|.. =++++.+.++-.. .+.. ..+-..+|++.+|+=..-|
T Consensus 288 ~~~~~~~d~~~~v~Hqgg~~-----Il~~v~~~Lgl~~ek~~~s~~vl~~yGNtSSaSv~~vL 345 (389)
T PLN03168 288 CVGSPDWNEMFWAVHPGGPA-----ILDQVEAKLKLTKDKMQGSRDILSEFGNMSSASVLFVL 345 (389)
T ss_pred hcCCCccccceEEecCCcHH-----HHHHHHHHcCCCHHHHHHHHHHHHHhCccHhhhHHHHH
Confidence 88888888898999955444 3455666555321 1111 0133456887776644443
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-10 Score=115.70 Aligned_cols=230 Identities=18% Similarity=0.170 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||++||+++++|| .+|+|... +. ...+..++..+
T Consensus 56 eseLa~eAa~~ALekAGI~~~DID-------~lI~Gdll--------------------------~Q--~~sAs~vA~~L 100 (337)
T PRK08304 56 ERKMMEDAIQQALQKANLKKSDID-------YLLAGDLL--------------------------NQ--IISANFAAREL 100 (337)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECCC--------------------------CC--cchHHHHHHHh
Confidence 467999999999999999999888 67777521 00 12456677778
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
|+ |.+.|.++|+++..||..|..+|++|.+|.+||++.+.+...+.-+-| ....+..|| ..-..
T Consensus 101 GI--Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerqfr~----------P~eyg~qrp----~taqw 164 (337)
T PRK08304 101 GI--PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQFRF----------PTEYGGQRP----PTAQW 164 (337)
T ss_pred CC--cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhhccC----------chhccccCC----CcceE
Confidence 76 999999999999999999999999999999999999986554322111 001222333 22345
Q ss_pred ecCceEEEEEcchHHHHhcCCeee----EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 008700 395 MGEGAGVLLLEELEHAKKRGAKIY----AEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATS 470 (557)
Q Consensus 395 ~gEGAaalvLe~~~~A~~~G~~i~----a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtg 470 (557)
.++||||+||.+.. .+.+|- ++|..+++. |...+.. .+.++....|.+-+++.|.+|+|-|.|..-+.|
T Consensus 165 tvtGAGA~i~~~~~----~~~~i~~~t~Gkv~D~g~~-d~~nmga--aMapAa~dti~~h~~d~~~~~~~yDli~tGDlg 237 (337)
T PRK08304 165 TVTGAGAVLLSREG----SGPRITHATIGKVVDLGIK-DPNDMGA--AMAPAAADTIQQHFKDTGRSPEDYDLIVTGDLG 237 (337)
T ss_pred EeeccEEEEEecCC----CCceEEEEeEEEEEecCCC-Ccccchh--hhhHHHHHHHHHHHHHcCCChhhccEEEEcchH
Confidence 78999999998631 233221 223333321 2222211 123456778999999999999999999875544
Q ss_pred CccCcHHHHHHHHHHhcCC--------CCc--cccc-Ccccc---cchhhhHHHHHHHHHHHHHHcCCCCC
Q 008700 471 TPAGDIKEYQALIHCFGQN--------RGL--RVNS-TKSMI---GHLLGAAGAVEAIAVVQAIRTGWIHP 527 (557)
Q Consensus 471 t~~~D~~E~~Al~~~~~~~--------~~~--~v~s-~K~~i---GH~~gAaG~~~li~~~~~l~~~~lpp 527 (557)
.. | .+-+.+++.++ ..| .+.. .+..+ |---|.|.++-.-..+..|++|.+-.
T Consensus 238 ~v-G----~~i~~~ll~~~g~~~~~~~~DcG~~iy~~~~q~~~aGgSGc~csa~v~~~~~~~~~~~g~~~r 303 (337)
T PRK08304 238 RV-G----REILKELLKEEGYDIGDNYNDCGLMIYDSEQQDVFAGGSGCACSAVVTYGYLLKELQKGKLKR 303 (337)
T ss_pred HH-H----HHHHHHHHHHhCCChhhcccccCeEEeccCCCcccCCCcccchhHHHHHHHHHHHHhcCCceE
Confidence 33 2 22233333211 111 1211 11111 23344555666667788888887643
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=116.30 Aligned_cols=94 Identities=27% Similarity=0.302 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.++++++|+++++++++|| .|++|+.... .....++..++...
T Consensus 26 ~~~L~~~a~~~al~~~~i~~~~Id-------~v~~G~~~~~-------------------------~~g~~~ar~~~l~a 73 (264)
T PF00108_consen 26 PEDLAAEAVKAALERAGIDPEDID-------AVIVGNVLQE-------------------------GEGQNIARQAALAA 73 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHGGGEE-------EEEEE-SSSC-------------------------TTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccchhhhh-------hcCccccccc-------------------------ccchhhhhhhhhhc
Confidence 456899999999999999998888 6999986421 12344677778888
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccch
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP 360 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p 360 (557)
|| .-|.++|+.+|+||+.||++|++.|++|+.|++|+||+|.|...
T Consensus 74 Gl~~~vp~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS~~ 121 (264)
T PF00108_consen 74 GLPESVPATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMSRV 121 (264)
T ss_dssp TS-TTSEEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETTTS
T ss_pred ccccccceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEecccccccc
Confidence 88 35999999999999999999999999999999999999997554
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=113.79 Aligned_cols=210 Identities=18% Similarity=0.184 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+++|+++||+++ ++++|+ -|++|+..+. ......+..|...||
T Consensus 50 ~~la~~Aa~~aL~~a--~~~~Id-------~li~~t~s~~-------------------------~~~~s~a~~v~~~Lg 95 (379)
T TIGR01835 50 VTMAASAAKPILDRN--DKQKID-------MVIFGTESGI-------------------------DQSKAAAVYVHGLLG 95 (379)
T ss_pred HHHHHHHHHHHHHhC--CHhhCC-------EEEEEeCCCC-------------------------CCCCCHHHHHHHHhC
Confidence 679999999999998 676666 5778875421 112236788999999
Q ss_pred CCC--CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 316 WMG--PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 316 l~G--p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
+.+ +.+.+..+|++++.||..|.++|++|..+.+||.++|..... .....-.
T Consensus 96 l~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~a~~~--------------------------~~~~~~~ 149 (379)
T TIGR01835 96 LQPFCRSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDIAKYG--------------------------LESPGEP 149 (379)
T ss_pred CCCCceEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeehhhcc--------------------------cCCCCCc
Confidence 964 789999999999999999999999999999999999872100 0011124
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEE-EEE-EecCCCCCC------CCCCCh--------HHHHHHHHHHHHHcCCC
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFR-GGS-FTSDAYHMT------EPHPDG--------VGVILCIEKALAHSGVS 457 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~-G~~-~~~d~~~~~------~~~p~~--------~~~~~ai~~aL~~Agl~ 457 (557)
+.||||+|+||++.. .+. .+. +.. ...+..... .+..++ ..+..++++.|+++|++
T Consensus 150 ~~GdGA~A~Ll~~~~-------~i~-~~~~~~~~~t~~~~df~~p~~~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~g~~ 221 (379)
T TIGR01835 150 TQGAGAVAMLVSADP-------KLL-AINEDSVLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTGLS 221 (379)
T ss_pred cccCccEEEEEecCC-------Cee-EEeccceeeecCCCCccCCCCCCceeECcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 589999999998631 222 121 111 111111111 111122 23457888999999999
Q ss_pred CCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-C----cc-----cccCcccccchhhhHHHHHHHHHH
Q 008700 458 REDVNYINAHATSTPAGDIKEYQALIHCFGQNR-G----LR-----VNSTKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 458 ~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~----~~-----v~s~K~~iGH~~gAaG~~~li~~~ 517 (557)
++|||++..|...+.+.- +++.++++... + +. -...-..+||+.+|+=...|..++
T Consensus 222 ~~did~~i~H~p~~~~~~----k~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~GN~~sas~~l~L~~~l 287 (379)
T TIGR01835 222 LADFAAFCFHVPFTKMGL----KALRHILKKNYEDEDESVQNAYLESIIYNREVGNLYTGSLYLGLASLL 287 (379)
T ss_pred HHHcCEEEECCCCCcHHH----HHHHHHHhhcccccHHHHHHHhhhhhhhhhhcCchHhHHHHHHHHHHH
Confidence 999999999987666432 22222221100 0 00 001234789999888766666554
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-08 Score=110.82 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 233 d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
......+-.++.++|+++|+++++|| -+++.++ +....+..+.+|..
T Consensus 186 ~ea~~v~~~~~~~lL~kaGi~p~dID-------~LIv~cS--------------------------~~~p~PSlAa~I~n 232 (521)
T PLN02854 186 AEAEAVMFGALDSLFSKTGVKPRDIG-------ILIVNCS--------------------------LFNPTPSLSAMIVN 232 (521)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECC--------------------------CCCCCCCHHHHHHH
Confidence 34556777889999999999998777 4555432 12234557889999
Q ss_pred hhCCCC--Ceeeec-CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCC
Q 008700 313 DLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (557)
Q Consensus 313 ~lgl~G--p~~tv~-~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~ 389 (557)
.+|++. .++.++ .||++++.+|..|.++|+.+....+||.++|.+. ...+ ++.+
T Consensus 233 ~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S-~~~y----------------------~g~D 289 (521)
T PLN02854 233 HYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENIT-LNWY----------------------FGND 289 (521)
T ss_pred HhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeee-cCCC----------------------CCCc
Confidence 999973 688898 7999999999999999999999999999999843 1100 0111
Q ss_pred C-C---CceecCceEEEEEcch
Q 008700 390 R-D---GFVMGEGAGVLLLEEL 407 (557)
Q Consensus 390 ~-d---G~v~gEGAaalvLe~~ 407 (557)
+ . .+++||||||+||++.
T Consensus 290 rs~lv~~~LFgDGAAAvlLs~~ 311 (521)
T PLN02854 290 RSMLLCNCIFRMGGAAVLLSNK 311 (521)
T ss_pred hhhhcceeeeccceeEEEEecc
Confidence 2 1 4678999999999874
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=109.88 Aligned_cols=220 Identities=20% Similarity=0.207 Sum_probs=134.9
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
.|-|.|+|..+|.. .+.+++-+.+ |.+ +.|-..+...+.. .+ ..+. ....-|+++|++
T Consensus 4 ~vgI~gig~Y~P~~~v~n~eLa~~~--g~~-----~~~~~~GI~~r~~----av-----a~~~-----Ed~~tmA~~AA~ 62 (459)
T PLN02577 4 NVGILAMEVYFPPTCVQQEALEAHD--GVS-----KGKYTIGLGQDCM----AF-----CTDV-----EDVISMSLTVVK 62 (459)
T ss_pred ccEEEEEEEeCCCeEEcHHHHHHHh--CCC-----HHHHhhccceeEe----cc-----CCCC-----CCHHHHHHHHHH
Confidence 58999999999997 6777765543 221 0000001100000 00 0111 124579999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHH---HhhCCC-CCe
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA---MDLGWM-GPN 320 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia---~~lgl~-Gp~ 320 (557)
.+|+++|+++++|| -|++|+..+.. .....+..|. ..+|.. ..+
T Consensus 63 ~aL~~agid~~~Id-------llivaTeT~~d-------------------------~~ps~A~~v~~ll~~LG~~~~~a 110 (459)
T PLN02577 63 SLLEKYNIDPKQIG-------RLEVGSETVID-------------------------KSKSIKTFLMQLFEESGNTDIEG 110 (459)
T ss_pred HHHHHcCCCHHHCC-------EEEEEcCCCCC-------------------------CCCchHHHHHHHHHHhCCCCcEE
Confidence 99999999998887 68888865321 1223445554 345554 378
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCC--CEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 321 YSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~--d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
+-+..+|.++..||..|..+|++|.. +.+||+|.|...... .+ .+ ..-|+|
T Consensus 111 fDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~----------------~~---~e--------~t~GdG 163 (459)
T PLN02577 111 VDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAE----------------GP---AR--------PTGGAG 163 (459)
T ss_pred eehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccC----------------CC---CC--------CCCCcc
Confidence 89999999999999999999999985 999999999732110 00 01 123999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEE----EEEEecCCCCCCCC-------CCCh--------HHHHHHHHHHHHHc-----
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFR----GGSFTSDAYHMTEP-------HPDG--------VGVILCIEKALAHS----- 454 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~----G~~~~~d~~~~~~~-------~p~~--------~~~~~ai~~aL~~A----- 454 (557)
|+|+||+..+ + ..|. |... .+......| ..++ ..+..++++.+++.
T Consensus 164 A~A~lv~~~~-------~--~~l~~~~~g~~~-~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k~~~~~~ 233 (459)
T PLN02577 164 AVAMLVGPNA-------P--IVFESKYRGSHM-AHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEKYEKLEG 233 (459)
T ss_pred eEEEEEccCC-------C--ceeecccccccC-cccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999998532 1 1222 1111 111111122 2222 23334455555555
Q ss_pred -CCCCCCccEEEEcCCCCccCc
Q 008700 455 -GVSREDVNYINAHATSTPAGD 475 (557)
Q Consensus 455 -gl~~~dId~ve~hgtgt~~~D 475 (557)
|+.++|+||+..|-..+.+.-
T Consensus 234 ~g~~~~d~d~~vfHqP~~km~~ 255 (459)
T PLN02577 234 KQFSISDADYFVFHAPYNKLVQ 255 (459)
T ss_pred cCCCHHHcCEEEecCCccchhH
Confidence 889999999999998877543
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=102.69 Aligned_cols=230 Identities=16% Similarity=0.152 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+.+||+|||+++++|| -+|+|...+ ..+++..++..+
T Consensus 54 E~~L~~EA~~~AL~kAGI~~~DID-------~i~vGdL~n----------------------------Q~ipssfvar~L 98 (334)
T PRK12404 54 ERKLLEEACSRAIEKAKLRKEDIQ-------FFLAGDLMN----------------------------QITPTSFAARTL 98 (334)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCC----------------------------CcCcHHHHHHHh
Confidence 457999999999999999998888 577776431 012334677778
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
| -|.+.|.++|+++..||..|..+|++|.+|.|||+......+.+.-+-| ....+..||....-
T Consensus 99 G--IP~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErqfR~----------P~eyG~Qrp~taqw---- 162 (334)
T PRK12404 99 G--IPYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQFRY----------PTEYGGQKPPTAQW---- 162 (334)
T ss_pred C--CCccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhhccC----------cccccCcCCCcccE----
Confidence 7 4789999999999999999999999999999999988765544422211 11223445533221
Q ss_pred ecCceEEEEEcchHHHHhcCCeee----EEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 008700 395 MGEGAGVLLLEELEHAKKRGAKIY----AEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATS 470 (557)
Q Consensus 395 ~gEGAaalvLe~~~~A~~~G~~i~----a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtg 470 (557)
.--|+|++||.+.. .+..|- ++|..+++. |+..+.. .+.++....|.+-+++.|.+|+|-|.|..-+.|
T Consensus 163 TvTgaga~~l~~~~----~~~~i~~~T~Gkv~D~g~~-d~~nMGa--aMAPAA~dti~~h~~d~~~~~~~yDlI~TGDLg 235 (334)
T PRK12404 163 TVTGAGAAILSKTG----DGPRVTSATIGRVVDMGLT-DPFNMGG--AMAPAAVDTIEAHLRDRQIDASYYDLIVTGDLG 235 (334)
T ss_pred EEEceEEEEEecCC----CCceEEEEEEEEEEecCCC-Ccccchh--hhhHHHHHHHHHHHHHhCCChhhccEEEEcchH
Confidence 33578888997531 232221 223333321 2222211 123456678999999999999999999875444
Q ss_pred CccCcHHHHHHHHHHhcCCC---------Cc--ccccCcccc---cchhhhHHHHHHHHHHHHHHcCCCCC
Q 008700 471 TPAGDIKEYQALIHCFGQNR---------GL--RVNSTKSMI---GHLLGAAGAVEAIAVVQAIRTGWIHP 527 (557)
Q Consensus 471 t~~~D~~E~~Al~~~~~~~~---------~~--~v~s~K~~i---GH~~gAaG~~~li~~~~~l~~~~lpp 527 (557)
.. | .+-+.+++.++. .| .+......+ |---|.|.++-.-..+..|++|.+-.
T Consensus 236 ~v-G----~~i~~~ll~~~g~~~~~~~~~DCG~~iyd~~~~~~aGgSGcgcsA~v~~g~~~~~~~~g~~~r 301 (334)
T PRK12404 236 HV-G----REIAKDLLHKHGVKVPEEQFQDCGLLIYREGQPVIAGASGPGCSATVTYGHLLNRMKRGELKR 301 (334)
T ss_pred HH-H----HHHHHHHHHHcCCCCCcccccccCeEEecCCCcccCCCcccchHHHHHHHHHHHHHhcCCceE
Confidence 33 1 233344442210 01 111111111 23344555666667788888887643
|
|
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5e-08 Score=100.19 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..-|+++|++++|.++++++..|. .|++|+..+.... -..+..|+..+
T Consensus 51 ~vTmaveAA~~~l~r~~~D~~~Ig-------~v~vgTES~~d~~-------------------------K~~at~v~~~l 98 (377)
T COG3425 51 AVTMAVEAARNALKRADIDPSKIG-------AVIVGSESGPDAV-------------------------KPTATIVAEAL 98 (377)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCc-------eEEEecCCCcccc-------------------------cchHHHHHHHh
Confidence 456999999999999999987665 6899987543221 12467888899
Q ss_pred CCCCC--eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCC
Q 008700 315 GWMGP--NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (557)
Q Consensus 315 gl~Gp--~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG 392 (557)
|+.-- .+-+..+|-++..||+.|..+|.+|..+.+||.|.|..... |.. .--
T Consensus 99 g~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~------------------~~~--------~~E 152 (377)
T COG3425 99 GLNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYA------------------PGD--------ALE 152 (377)
T ss_pred CCCCceehhhHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhccC------------------CCc--------ccC
Confidence 98543 33477899999999999999999999999999999973211 100 111
Q ss_pred ceecCceEEEEEcchHHHHhcCCeeeEEEEEEEE-ecCCCCCCC----CCCC----------hHHHHHHHHHHHHHcCCC
Q 008700 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF-TSDAYHMTE----PHPD----------GVGVILCIEKALAHSGVS 457 (557)
Q Consensus 393 ~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~-~~d~~~~~~----~~p~----------~~~~~~ai~~aL~~Agl~ 457 (557)
+.-|.|++|+|+... ..+.+++.+.+. ..|-..... +.|. ...+..+.+..+++.|++
T Consensus 153 ~t~GAGavA~lIg~n-------~~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls 225 (377)
T COG3425 153 YTAGAGAVAFLIGKN-------PPIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLS 225 (377)
T ss_pred ccCCCceEEEEEccC-------CCeEEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHHhCCC
Confidence 336899999999852 345555544433 334332222 2221 145677888889999999
Q ss_pred CCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCccccc-CcccccchhhhHHHHHHHHHHHHHH
Q 008700 458 REDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNS-TKSMIGHLLGAAGAVEAIAVVQAIR 521 (557)
Q Consensus 458 ~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s-~K~~iGH~~gAaG~~~li~~~~~l~ 521 (557)
++|+||+..|-..+.+ -..+++.+.-....+.-+- ...++|.+..+|..++|+.++..-+
T Consensus 226 ~~dfdy~vfH~P~~k~----~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~Las~L~~a~ 286 (377)
T COG3425 226 PDDFDYIVFHQPNGKF----PKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLASLLDNAK 286 (377)
T ss_pred hhhhCeEEecCCCCch----HHHHHHHhCccHhhcCccchhhhhcCcccchhHHHHHHHHHhhcC
Confidence 9999999999887774 2344444332211121122 2236899999999999988876554
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.4e-08 Score=103.34 Aligned_cols=119 Identities=11% Similarity=0.155 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 233 d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
.....++..|+.+||+++|+++++|| -+++ ++.+ ....+..+.+|..
T Consensus 170 ~ea~~l~~~A~~~aL~kaGi~p~dID-------~LVv-~cS~-------------------------~~~~PSlaa~V~~ 216 (502)
T PLN02377 170 EEAEQVMFGALDNLFANTNVNPKDIG-------ILVV-NCSL-------------------------FNPTPSLSAMIVN 216 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEE-ECCC-------------------------CCCCCcHHHHHHH
Confidence 34567999999999999999998777 3444 4321 2234557889999
Q ss_pred hhCCCC--Ceeeec-CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCC
Q 008700 313 DLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (557)
Q Consensus 313 ~lgl~G--p~~tv~-~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~ 389 (557)
.+|++. .++.++ .||++++.+|..|.++|+.+....|||.++|.+.... . ++++
T Consensus 217 ~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~-~----------------------~~d~ 273 (502)
T PLN02377 217 KYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNW-Y----------------------FGNK 273 (502)
T ss_pred HhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEecccccc-C----------------------CCCC
Confidence 999974 789999 6999999999999999999999999999999843111 0 1112
Q ss_pred CC----CceecCceEEEEEcch
Q 008700 390 RD----GFVMGEGAGVLLLEEL 407 (557)
Q Consensus 390 ~d----G~v~gEGAaalvLe~~ 407 (557)
+. ..++||||||+||+..
T Consensus 274 ~s~lv~n~LFgDGAaAvlLs~~ 295 (502)
T PLN02377 274 KSMLIPNCLFRVGGSAVLLSNK 295 (502)
T ss_pred ccccccceeeccccEEEEEecc
Confidence 22 3668999999999863
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-07 Score=99.94 Aligned_cols=124 Identities=11% Similarity=0.111 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 233 d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
+....++.+|+++||+++|+++++|| -|++.++.+ ...+..+.+|..
T Consensus 146 ~ea~~la~~Aa~~aL~~agi~p~dId-------~lIv~tst~--------------------------~~~Pslaa~V~~ 192 (478)
T PLN02932 146 KETEEVIIGAVDNLFRNTGISPSDIG-------ILVVNSSTF--------------------------NPTPSLSSILVN 192 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEccCC--------------------------CCCCcHHHHHHH
Confidence 34667999999999999999998887 566666531 234557889999
Q ss_pred hhCCC--CCeeeec-CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCC
Q 008700 313 DLGWM--GPNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (557)
Q Consensus 313 ~lgl~--Gp~~tv~-~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~ 389 (557)
.+|++ -.++.++ .||++++.+|..|.++|+.+....|||.++|.+.... .. .. .+ +..
T Consensus 193 ~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~~-~~---------------~d-~r--~~l 253 (478)
T PLN02932 193 KFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENITQNL-YL---------------GN-NK--SML 253 (478)
T ss_pred HhCCCCCceEEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEeeccccc-CC---------------Cc-ch--hhh
Confidence 99996 3789999 8999999999999999999999999999999843211 10 00 00 000
Q ss_pred CCCceecCceEEEEEcchH
Q 008700 390 RDGFVMGEGAGVLLLEELE 408 (557)
Q Consensus 390 ~dG~v~gEGAaalvLe~~~ 408 (557)
-..+++||||+|+||+..+
T Consensus 254 ~t~~LFgDGAAAvlLs~~~ 272 (478)
T PLN02932 254 VTNCLFRIGGAAILLSNRS 272 (478)
T ss_pred ccceeecccceEEEEeccc
Confidence 1246789999999999743
|
|
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-09 Score=93.57 Aligned_cols=98 Identities=23% Similarity=0.364 Sum_probs=66.9
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcC-CCCccc
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRV 494 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~-~~~~~v 494 (557)
+|+++|.++..... .|...+.+...+++++|+++|++++|||++|+|..++. .+...++ .++- ..++++
T Consensus 2 ~pla~i~~~~~~~~-----~P~~~~~~p~~A~~~al~~ag~~~~did~~Ei~EaFA~----~~l~~~~-~lg~~~~~vN~ 71 (123)
T PF02803_consen 2 KPLARIVGYASAGV-----DPEDMGLGPVPAARKALERAGLTPDDIDVIEINEAFAA----QVLAFLE-ALGLDPEKVNP 71 (123)
T ss_dssp -ESEEEEEEEEEE-------GGGGGGTHHHHHHHHHHHHT--GGGESEEEE--SBHH----HHHHHHH-HHTTGGGGBST
T ss_pred CeEEEEEEEEEEec-----CHHHhCchHHHHHHHHHHHhCCCccccchhhccchhhh----HHHHhhc-cccccccccCc
Confidence 57899999887532 23334556788999999999999999999999987776 3333333 3342 234666
Q ss_pred ccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 495 NSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 495 ~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+...-.+|||.||+|+..++.++.+|+++
T Consensus 72 ~GG~la~GHP~gasG~r~~~~l~~~L~~~ 100 (123)
T PF02803_consen 72 NGGALALGHPLGASGARLVVELAHQLRRR 100 (123)
T ss_dssp T--HHHH-BHTTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHh
Confidence 66666689999999999999999999873
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-08 Score=93.37 Aligned_cols=123 Identities=19% Similarity=0.313 Sum_probs=110.0
Q ss_pred CCCChhhhccCCHHHHHHHHHHHHHHHHC-CCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccc
Q 008700 222 GWVAPKLSKRMDKFMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPF 300 (557)
Q Consensus 222 ~~i~p~~~~~md~~~rl~l~aa~eALedA-Gl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~ 300 (557)
.+|++.+.|||++..||+++++.+++++. .++ .+++++..|+.....+.++.+..+ ..++|..|..
T Consensus 21 ~~lp~m~rRRls~~~rla~~~a~~~~~~~~~~d------------~~VfaS~~Gel~~t~~ll~~l~~~-~~lSPT~Fs~ 87 (218)
T PF13723_consen 21 AFLPPMQRRRLSRLSRLALEAALECLAEDEQPD------------AIVFASRHGELERTFKLLEALAEE-EELSPTAFSQ 87 (218)
T ss_pred ccCCHHHHcccCHHHHHHHHHHHHHHhccCCCC------------cEEEEeCCCcHHHHHHHHHHHHhC-CCcCccchhh
Confidence 34899999999999999999999998752 222 588899999999888888888654 5689999999
Q ss_pred cccchhHHHHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEecccccc
Q 008700 301 ATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (557)
Q Consensus 301 ~~~n~~a~~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~ 358 (557)
.+.|.+++++++..+.++|+.+|..+-.+...||..|+..|..| ++-||++.+|..+
T Consensus 88 SVHNA~aG~~sI~~~~~~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~ 144 (218)
T PF13723_consen 88 SVHNAAAGYWSIATKNTGPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPL 144 (218)
T ss_pred hhhhHHHHHHHHHhCCCCceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999 8999999999843
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-07 Score=96.41 Aligned_cols=176 Identities=18% Similarity=0.153 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|++.|++.+|+++++++++|+ -|++|+..+.. .....+..+...|
T Consensus 50 ~~tma~~AA~~lL~~a~id~~~Id-------~Liv~TeS~~d-------------------------~sps~a~~v~~lL 97 (454)
T TIGR01833 50 INSLCLTVVSKLMERYNIDYNQIG-------RLEVGTETIID-------------------------KSKSVKTVLMQLF 97 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECCCCCC-------------------------CCCchHHHHHHHH
Confidence 467999999999999999998777 58888764321 1223456666655
Q ss_pred C---CC-CCeeeecCCChhHHHHHHHHHHHHHcCCC--CEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 315 G---WM-GPNYSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 315 g---l~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~--d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
+ .+ ..++-+..+|+++..||..|..+|++|.. +.+||++.|...... ....
T Consensus 98 ~~lG~~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~~-------------------~~~~---- 154 (454)
T TIGR01833 98 EESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYAK-------------------GNAR---- 154 (454)
T ss_pred HhcCCCCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEeccccccC-------------------CCee----
Confidence 4 32 36788999999999999999999999974 899999999721110 0011
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCC-------C----hHHHHHHHHHHH------
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHP-------D----GVGVILCIEKAL------ 451 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p-------~----~~~~~~ai~~aL------ 451 (557)
...|+||+|+||++... ..-+. .+.+..+. +......|.. + .....+++++++
T Consensus 155 ----~t~GaGAvAmLv~~~~~-~~~~~----~~~~~~~~-~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~ 224 (454)
T TIGR01833 155 ----PTGGAGAVAMLIGPNAP-IVFER----GLRGSHMQ-HAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKK 224 (454)
T ss_pred ----eccccceEEEEeccCcc-ceecC----ccceEEEe-ecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHH
Confidence 13599999999986433 11111 11222221 1111111211 1 123344433333
Q ss_pred -----HHc----CCCCCCccEEEEcCCCCccCc
Q 008700 452 -----AHS----GVSREDVNYINAHATSTPAGD 475 (557)
Q Consensus 452 -----~~A----gl~~~dId~ve~hgtgt~~~D 475 (557)
++. +..++|+||+..|-..+.+.-
T Consensus 225 ~~~a~~~~~~~~~~~~~dfd~~~fH~P~~km~~ 257 (454)
T TIGR01833 225 IEKQWGKSGGDRKFTLNDFDYMVFHSPYCKLVQ 257 (454)
T ss_pred HHHhhhhhccccCCCHhHcCEEeccCCcccHHH
Confidence 333 578899999999998887643
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=100.59 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....++..|+++||+++|+++++|| -+++.++ ++...+..+.+|...
T Consensus 175 Ea~~~~~~Aa~~aL~kaGi~p~DID-------iLIv~~S--------------------------~~~~~PSlaa~I~n~ 221 (511)
T PLN02192 175 EAETVMFGAIDQLLAKTSVKPKDIG-------ILIVNCS--------------------------LFNPTPSLSAMVINH 221 (511)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECC--------------------------CCCCCchHHHHHHHH
Confidence 3567889999999999999998777 3555433 123345678899999
Q ss_pred hCCCC--Ceeeec-CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCC
Q 008700 314 LGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (557)
Q Consensus 314 lgl~G--p~~tv~-~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~ 390 (557)
+|++. +++.++ .||++++.+|..|.++|+.+....+||+++|.+. ...+ +..++
T Consensus 222 lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~S-~n~y----------------------~g~dr 278 (511)
T PLN02192 222 YKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENIT-LNWY----------------------FGNDR 278 (511)
T ss_pred hCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEecc-ccCC----------------------CCCCH
Confidence 99974 799999 6999999999999999999999999999999844 1100 01111
Q ss_pred CC----ceecCceEEEEEcch
Q 008700 391 DG----FVMGEGAGVLLLEEL 407 (557)
Q Consensus 391 dG----~v~gEGAaalvLe~~ 407 (557)
.- .++||||||+||+..
T Consensus 279 s~lv~n~LFgDGAaAvLLs~~ 299 (511)
T PLN02192 279 SMLVSNCLFRMGGAAILLSNK 299 (511)
T ss_pred HHHhccccccccceEEEEecc
Confidence 11 457999999999874
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-06 Score=82.04 Aligned_cols=187 Identities=14% Similarity=0.169 Sum_probs=118.8
Q ss_pred CCcEEEEecceeccCC---CCHHHHHHHHHcCCCcceec--cC----CCCCCCCccccccccCCCCCCC--CChhh--hc
Q 008700 164 QKRVVVTGMGLVSPLG---HEPDVFYNNLLEGVSGISEI--ET----FDCTSFPTKIAAEIKSFSTDGW--VAPKL--SK 230 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g---~~~~~lw~~L~~G~~~i~~~--~~----~~~~~~~~~~~g~i~~fd~~~~--i~p~~--~~ 230 (557)
.++|+++.++|.-|.. .+.+.+++....-. .+.+- +. +..+++..+ -+-++.+ ++|.. ..
T Consensus 6 ~r~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~-~f~~~sl~F~~kIlerSGlG~e------Ty~P~~~~~~p~~~s~~~ 78 (290)
T PF08392_consen 6 PRPVYLVDFACYKPPDELRVSREEFIEHARRCG-RFDEESLDFQRKILERSGLGDE------TYLPPALHEIPPDPSLAA 78 (290)
T ss_pred CCCEEEEeeeecCCCcccccCHHHHHHHHHhcc-cCChhHHHHHHHHHHhcCCCcc------ccCCcccccCCCcccHHH
Confidence 3579999999999886 47777777665422 11110 00 000111000 0000110 22221 12
Q ss_pred cCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHH
Q 008700 231 RMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAML 310 (557)
Q Consensus 231 ~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~i 310 (557)
..+....++-.++.++|+.+|+.|++|| .+++.++. +...+.++.+|
T Consensus 79 a~~Eae~v~f~av~~LL~ktgv~p~dId-------iLVvncs~--------------------------f~ptPSLsamI 125 (290)
T PF08392_consen 79 AREEAEMVIFGAVDDLLAKTGVKPSDID-------ILVVNCSL--------------------------FNPTPSLSAMI 125 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEECcC--------------------------CCcCCcHHHHH
Confidence 2244556788899999999999998777 45665543 33445678899
Q ss_pred HHhhCCCCCeee--e-cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCc
Q 008700 311 AMDLGWMGPNYS--I-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387 (557)
Q Consensus 311 a~~lgl~Gp~~t--v-~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd 387 (557)
...+|++.-..+ + ..||++|+.+|.+|.++|+.-.-..+||..+|... +..+.+-+..-.++
T Consensus 126 vnr~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~p~~~ALVVstE~~s-~~~Y~G~~rsmlv~-------------- 190 (290)
T PF08392_consen 126 VNRYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAHPNSYALVVSTENIS-ANWYRGNDRSMLVS-------------- 190 (290)
T ss_pred HHHhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhCCCcEEEEEEEeecc-cccccCCcHHHhhc--------------
Confidence 999999874443 3 34899999999999999999999999999999844 33233222222222
Q ss_pred CCCCCceecCceEEEEEcchHH
Q 008700 388 INRDGFVMGEGAGVLLLEELEH 409 (557)
Q Consensus 388 ~~~dG~v~gEGAaalvLe~~~~ 409 (557)
..++.+|++|++|.+...
T Consensus 191 ----NcLFr~GgAAvLLSn~~~ 208 (290)
T PF08392_consen 191 ----NCLFRMGGAAVLLSNKPS 208 (290)
T ss_pred ----cccccCCceeEEeecCcc
Confidence 345789999999987654
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-06 Score=86.80 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=84.4
Q ss_pred HHHHHHH-HHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 235 FMLYLLT-AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 235 ~~rl~l~-aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
...+++. |+.+||+++|+++++|| -|++. +.+ ....+..+.++...
T Consensus 133 e~em~i~~A~~~aL~~aGi~p~dID-------~LIvs-~T~-------------------------~~~~Pslaa~l~~~ 179 (466)
T PLN00415 133 ESELVIFGALNSLFKKTGIEPREVG-------IFIVN-CSL-------------------------FNPNPSLSSMIVNR 179 (466)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEE-CcC-------------------------CCCCchHHHHHHHH
Confidence 3445555 77788999999998777 34433 221 11234567888999
Q ss_pred hCCC--CCeeeecC-CChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCC
Q 008700 314 LGWM--GPNYSIST-ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (557)
Q Consensus 314 lgl~--Gp~~tv~~-aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~ 390 (557)
+|++ -..+.|+. ||++++.+|..|.+.++.+....+||.++|.+.... +..-+....+
T Consensus 180 LGLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~S~~~-~~~~dr~~lv------------------ 240 (466)
T PLN00415 180 YKLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMTLSM-YRGNDRSMLV------------------ 240 (466)
T ss_pred hCCCCCceEEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEecccccc-cCCCcHhHhc------------------
Confidence 9996 36788997 999999999999999999999999999999832111 0000000000
Q ss_pred CCceecCceEEEEEcchH
Q 008700 391 DGFVMGEGAGVLLLEELE 408 (557)
Q Consensus 391 dG~v~gEGAaalvLe~~~ 408 (557)
...++||||+|+||+...
T Consensus 241 ~n~LFgDGAAAvlLs~~~ 258 (466)
T PLN00415 241 PNCLFRVGGAAVMLSNRS 258 (466)
T ss_pred cceeecccceEEEEecCc
Confidence 124679999999999743
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=79.30 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....+..++.++||+++++.+++|| .|++.++. +...+.+-.+|...
T Consensus 75 ~a~~l~v~a~r~aL~~~~l~pedId-------~vv~vtsT--------------------------G~~~Ps~dari~~~ 121 (356)
T COG3424 75 EAVPLGVDALRRALDGSPLRPEDID-------AVVTVTST--------------------------GLATPSLDARIVGE 121 (356)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHCc-------EEEEEeec--------------------------cccCCChhHHHHhh
Confidence 3456899999999999999998777 45555543 23334445677888
Q ss_pred hCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCC
Q 008700 314 LGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (557)
Q Consensus 314 lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~ 390 (557)
|||.-- .-.-.-||+.+..++..|.+.++..-...+|++.+|.+.-.. ++.++.
T Consensus 122 Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~P~~~vlvV~vELCSLt~-----------------------~~~d~t 178 (356)
T COG3424 122 LGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAAPDANVLVVCVELCSLTY-----------------------VFADDT 178 (356)
T ss_pred cCCCCccceeeeecchhhhhhhHHHHHHHHHhhCccceEEEEEeeeeeeee-----------------------ecCCCC
Confidence 888431 112346899999999999999999999999999999853211 111111
Q ss_pred C-C----ceecCceEEEEEcchHHHHhc---CCeee----------EEEEEEEEecCCCCCC----CCCCChHHHHHHHH
Q 008700 391 D-G----FVMGEGAGVLLLEELEHAKKR---GAKIY----------AEFRGGSFTSDAYHMT----EPHPDGVGVILCIE 448 (557)
Q Consensus 391 d-G----~v~gEGAaalvLe~~~~A~~~---G~~i~----------a~I~G~~~~~d~~~~~----~~~p~~~~~~~ai~ 448 (557)
+ . -++|||++|+|+.-...+... +..|+ -.+-||.++.+|.+.. .|..-...+...+.
T Consensus 179 ~s~lVgtaLF~DG~AA~vv~gd~~~~~~~~~~p~i~~s~StL~~dse~~Mgwdv~d~G~~~vlSrdlp~lIe~~l~~~V~ 258 (356)
T COG3424 179 KSNLVGTALFGDGAAAVVVSGDRRAEGKRPLRPDILDSFSTLYPDSEDIMGWDVGDQGLKVVLSRDLPNLIESYLAPNVT 258 (356)
T ss_pred cccceeeeeecCCeeEEEEeccccccccCCCCceecccccccCCccccccceeecCCcEEEEEcCchhHHHHHHhhhhHH
Confidence 1 2 248999999999863222111 11111 1134566666666432 12222455667889
Q ss_pred HHHHHcCCCCCCccEEEEcCCCCccC
Q 008700 449 KALAHSGVSREDVNYINAHATSTPAG 474 (557)
Q Consensus 449 ~aL~~Agl~~~dId~ve~hgtgt~~~ 474 (557)
..|...|++.+||+.+.+|=-|-+.-
T Consensus 259 ~fL~~~~ls~~dI~~w~~HPGG~KVi 284 (356)
T COG3424 259 TFLATHGLSIEDIEAWVVHPGGPKVI 284 (356)
T ss_pred HHHHHcCCchhhhceeeeCCCCchHH
Confidence 99999999999999999995555543
|
|
| >PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.5e-05 Score=73.06 Aligned_cols=92 Identities=16% Similarity=0.055 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
-...|+.+|+.+||+++|+++++|+ .+++-++. +...+.+-.++...
T Consensus 99 ~a~~L~~~Aa~~AL~~~g~~~~dIt-------hlv~vs~T--------------------------G~~~PglD~~l~~~ 145 (226)
T PF00195_consen 99 EAPPLAEEAARKALAEAGLDPSDIT-------HLVTVSCT--------------------------GIAAPGLDARLINR 145 (226)
T ss_dssp HHHHHHHHHHHHHHHHHTS-GGGEC-------EEEEEESS--------------------------SSECS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccc-------eEEEEecC--------------------------CcCCCchhHHHHhc
Confidence 3457899999999999999998776 46655553 33344456688889
Q ss_pred hCCCC---CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEecccccc
Q 008700 314 LGWMG---PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (557)
Q Consensus 314 lgl~G---p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~ 358 (557)
|||+. -.....-||..|..+|..|.+..+...-..|||..+|.+.
T Consensus 146 LgL~~~v~R~~i~~~GC~gg~~~L~~A~~~~~~~p~a~VLvv~vElcs 193 (226)
T PF00195_consen 146 LGLRPDVQRTPIFGMGCAGGAAGLRRAKDIARANPGARVLVVCVELCS 193 (226)
T ss_dssp HT--TTSEEEEEES-GGGHHHHHHHHHHHHHHHSTT-EEEEEEEEEGG
T ss_pred CCCCCCcEEEEEeccchhhHHHHHHHHHHHHhCCccceEEEEEEEeeE
Confidence 99964 3344667999999999999999999999999999999854
|
3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A .... |
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00072 Score=67.53 Aligned_cols=228 Identities=19% Similarity=0.176 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..+|..+++..||+.+++.+++|| ++++...- + ..+.+...+..|
T Consensus 51 E~~m~~~A~~~al~Ka~l~~~dId--------~~~aGDLl-------------------------n--Q~i~s~f~ar~l 95 (329)
T PF07451_consen 51 ESKMQKEAVELALKKAGLKKEDID--------YLFAGDLL-------------------------N--QIISSSFAARDL 95 (329)
T ss_dssp HHHHHHHHHHHHHHHTT--GGG-S--------EEEEEETT-------------------------C--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCe--------EEEehhhh-------------------------h--hhHHHHHHHHhc
Confidence 467899999999999999998777 55554320 0 112344556666
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
++ |-+-+-.+|++...+|.+|..+|..|-+|.+|++......+.+.-+-|- . ..+..||-.. ..
T Consensus 96 ~i--Pf~GlygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQfR~P-----~-----EyG~Qrp~tA----qw 159 (329)
T PF07451_consen 96 GI--PFLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQFRFP-----T-----EYGGQRPPTA----QW 159 (329)
T ss_dssp T----EEEB--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHHT--------G-----GGT----TT------E
T ss_pred CC--CccchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhhccCc-----h-----hccCCCCCcc----cE
Confidence 65 8888999999999999999999999999999999887655544322111 0 1123344221 12
Q ss_pred ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEe--cCCCCCCCCCCCh----HHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 008700 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT--SDAYHMTEPHPDG----VGVILCIEKALAHSGVSREDVNYINAHA 468 (557)
Q Consensus 395 ~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~--~d~~~~~~~~p~~----~~~~~ai~~aL~~Agl~~~dId~ve~hg 468 (557)
.--|+|++||.+... .++ |.+..+. .| +....|.-++ ++....|.+-|++.|.+|+|.|.|..-+
T Consensus 160 TVTGaGa~il~~~~~------~p~--It~~T~GkVvD-~G~~D~~nMGaAMAPAA~dTI~~h~~D~g~~p~dYDlIvTGD 230 (329)
T PF07451_consen 160 TVTGAGAAILSKEGS------GPR--ITHATIGKVVD-MGIKDPNNMGAAMAPAAADTIEQHFKDTGRSPDDYDLIVTGD 230 (329)
T ss_dssp E--EEEEEEEESS--------SEE--EEEEE----B--SS---TT-HHHHHHHHHHHHHHHHHHHCT--GGG-SEEEESS
T ss_pred EEeceEEEEEecCCC------CcE--EEEEEEEEEEE-cCCCCcccchhhHhHHHHHHHHHHHHHhCCChhhcCeEEecc
Confidence 345899999986432 232 3333221 11 1233333333 3445678889999999999999998644
Q ss_pred CCCccCcHHHHHHHHHHhcCCC--------C--cccccCc-ccc---cchhhhHHHHHHHHHHHHHHcCCCCC
Q 008700 469 TSTPAGDIKEYQALIHCFGQNR--------G--LRVNSTK-SMI---GHLLGAAGAVEAIAVVQAIRTGWIHP 527 (557)
Q Consensus 469 tgt~~~D~~E~~Al~~~~~~~~--------~--~~v~s~K-~~i---GH~~gAaG~~~li~~~~~l~~~~lpp 527 (557)
.|.. -..-+.+.+.++. . +.+.... -.+ |---|.|.++-.-..+..|++|.+-.
T Consensus 231 Lg~v-----G~~il~~Ll~~~G~~i~~~~~DCG~~iyd~~~Qdv~aGGSGcgCSA~V~~g~ll~~l~~g~~kr 298 (329)
T PF07451_consen 231 LGKV-----GRKILRDLLKEKGYDISENYNDCGLMIYDPEKQDVHAGGSGCGCSAVVLCGYLLPKLRKGELKR 298 (329)
T ss_dssp -HHH-----HHHHHHHHHHHTT---GGGEEEHHHCSS-TT-S--TT-EESHHHHHHHHHHCHHHHHHTTS-SE
T ss_pred hHHH-----HHHHHHHHHHHcCCCCccccccCCeEeecCCccccccCCCCcchHHHHHHHHHHHHHHcCCceE
Confidence 3322 2233444443220 0 0111111 111 33345566666677788888887643
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.7e-05 Score=61.49 Aligned_cols=64 Identities=27% Similarity=0.386 Sum_probs=47.2
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceE
Q 008700 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
|-|+.+|++.+.||+.|..+|++|.++.+|+.+.|........ ......+++||||+
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~~~~~-----------------------~~~~~~~~~gDgAa 57 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSRIVDR-----------------------TDRQTAFIFGDGAA 57 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGGSHT-----------------------THHHHHTTB-EEEE
T ss_pred CcccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccccccc-----------------------cccCcceeecchhe
Confidence 4578999999999999999999999999999999984321100 00112346899999
Q ss_pred EEEEcch
Q 008700 401 VLLLEEL 407 (557)
Q Consensus 401 alvLe~~ 407 (557)
|+||++.
T Consensus 58 A~vl~~~ 64 (80)
T PF08545_consen 58 AVVLSRD 64 (80)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999985
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0024 Score=59.40 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=88.2
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
++|=|.+|+..+|.- .+.+++.+. .|.+. ..|....+-.-..| .++.| .-.-|++.|+
T Consensus 3 ~~VGI~~i~~y~p~~~v~~~~La~~--~g~d~---------~K~~~glgq~~~av-----~~~~E-----D~vTmA~nAa 61 (174)
T PF01154_consen 3 QNVGIDAIEFYIPRYYVDQEELAEA--RGVDP---------GKYTIGLGQEKMAV-----PPPDE-----DIVTMAANAA 61 (174)
T ss_dssp SSEEEEEEEEE-ESEEEEHHHHHHH--TTS-T---------CHHHTTT--SEEEE-------TTS------HHHHHHHHH
T ss_pred ccccEeEEEEecCceEecHHHHHHH--hCCCH---------HHhhhhcCeeEEEe-----CCCcc-----cHHHHHHHHH
Confidence 468999999999987 677776443 12221 10100000000001 11222 2356899999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCCC----
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP---- 319 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp---- 319 (557)
+.+|++.++++++|+ -+++|+..+-.. .-.++..+...||+.|.
T Consensus 62 ~~ll~~~~id~~~Ig-------~l~vgTES~vD~-------------------------sKs~~t~v~~ll~~s~~~~~~ 109 (174)
T PF01154_consen 62 KPLLDRYNIDPDDIG-------RLIVGTESGVDK-------------------------SKSISTYVHQLLGLSGNPDCR 109 (174)
T ss_dssp HTTHHHHT-HHHHEE-------EEEEE-SS-SBS-------------------------SS-HHHHHHHHTTTTT-SSSE
T ss_pred HHHHHHcCCCHHHcc-------EEEEeccccccc-------------------------cccHHHHHHHHhCcCCCCcee
Confidence 999999988887655 477887642111 11256778888998542
Q ss_pred eeeecCCChhHHHHHHHHHHHHHcCCCC--EEEEeccccc
Q 008700 320 NYSISTACATSNFCILNAANHIIRGEAN--VMLCGGSDAA 357 (557)
Q Consensus 320 ~~tv~~aCaSgl~Al~~A~~~I~~G~~d--~aLvgGve~~ 357 (557)
.+-+-.+|-+|..||..|+.+|+++..| .+||.++|..
T Consensus 110 ~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA 149 (174)
T PF01154_consen 110 GVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIA 149 (174)
T ss_dssp EEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE
T ss_pred eeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEecccc
Confidence 3567889999999999999999998765 8999999973
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.00079 Score=77.32 Aligned_cols=51 Identities=6% Similarity=-0.000 Sum_probs=45.9
Q ss_pred CCchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 76 GSSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 76 ~~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
+...+|.+| +|||++|||||||.+.+|+. ++.+++|+|||+.++..+...+
T Consensus 567 ~~~~~f~~lG~dSl~av~l~~~l~~~~g~~-----l~~~~~~~~pt~~~la~~l~~~ 618 (705)
T PRK06060 567 DQDLAFSELGFDSQMTVTLCKRLAAVTGLR-----LPETVGWDYGSISGLAQYLEAE 618 (705)
T ss_pred CCCCChhhcCchHHHHHHHHHHHHHHhCCC-----CCceeeecCCCHHHHHHHHHHH
Confidence 346789999 99999999999999999988 9999999999999888777655
|
|
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.12 Score=42.65 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=38.1
Q ss_pred HHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCC
Q 008700 451 LAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIH 526 (557)
Q Consensus 451 L~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lp 526 (557)
|+++|++++|||++..|-.+... .+.+.+.++-....... .-..+||+.+|+-.+.+.. .++++.+.
T Consensus 1 L~~~g~~~~did~~i~hq~~~~~-----~~~~~~~lgi~~~~~~~-~~~~~Gn~~sa~~~~~L~~---~~~~g~~~ 67 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASKKI-----LDSIAKRLGIPPERFPD-NLAEYGNTGSASIPINLAD---ALEEGRIK 67 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSHHH-----HHHHHHHHTS-GGGBE--THHHH-B-GGGHHHHHHHH---HHHTTSSC
T ss_pred CccccCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCcHHHHHH-HHhccCcchhhhHHHHHHH---HHHcCCCC
Confidence 68999999999999999765543 23355555533221122 2266899998887776655 45555443
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.051 Score=42.00 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=38.7
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhh
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~ 126 (557)
+..|.++ +||+.++++.+++....|.. ++...+|++||......
T Consensus 21 ~~~~~~lG~DSl~~~~l~~~l~~~~g~~-----i~~~~~~~~~ti~~l~~ 65 (67)
T PF00550_consen 21 DTDFFDLGLDSLDAIELVSELEEEFGIK-----IPPSDLFEHPTIRDLAE 65 (67)
T ss_dssp TSBTTTTTSSHHHHHHHHHHHHHHHTSS-----TTHHHHCTSSSHHHHHH
T ss_pred CCCHHHhCCchHHHHHHHHHHHHHHcCC-----CCHHHHHcCCCHHHHHh
Confidence 5778899 99999999999999999988 99999999998875543
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.55 E-value=6.9 Score=42.25 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=56.7
Q ss_pred EEEEEEEEecCCCCCCCC--CCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcH-HHHHHHHHHhcCCCCcccc
Q 008700 419 AEFRGGSFTSDAYHMTEP--HPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDI-KEYQALIHCFGQNRGLRVN 495 (557)
Q Consensus 419 a~I~G~~~~~d~~~~~~~--~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~-~E~~Al~~~~~~~~~~~v~ 495 (557)
+.|.|.+.+.-+.+...+ .....-..++++++|+++|++++|||.|... +.++.++. .....+....|-....+..
T Consensus 5 v~Ivg~~rTp~g~~~g~~~~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g-~~~~~~~~~~~a~~v~~~lGl~~~~p~~ 83 (426)
T PRK08170 5 VYIVDGARTPFLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILG-CAMPSPDEANIARVVALRLGCGEKVPAW 83 (426)
T ss_pred EEEEecCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCcChHHHHHHHHhCcCCCceee
Confidence 346676655433322111 1123445789999999999999999988653 22222221 1112233334431111211
Q ss_pred cCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 496 STKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 496 s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
.+ +..+++|+..+..+...++.|..
T Consensus 84 ~v-----~~~CaSg~~al~~A~~~I~sG~~ 108 (426)
T PRK08170 84 TV-----QRNCASGMQALDSAAANIALGRA 108 (426)
T ss_pred ec-----cchhhHHHHHHHHHHHHHHCCCC
Confidence 11 23478899999999999988653
|
|
| >smart00823 PKS_PP Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Probab=80.60 E-value=0.49 Score=37.36 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=38.7
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
...|.++ +||+..+++++++....+.. .+...+|++|+...+.....
T Consensus 36 ~~~l~~~g~dSl~~~~~~~~l~~~~~~~-----i~~~~~~~~~t~~~l~~~i~ 83 (86)
T smart00823 36 DRPFRDLGLDSLTAVELRNRLEAATGLR-----LPATLVFDHPTPAALAEHLA 83 (86)
T ss_pred CCCHHHcCchHHHHHHHHHHHHHHHCCC-----CChHHHHcCCCHHHHHHHHH
Confidence 5678899 99999999999999888777 88888999998876555443
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 557 | ||||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 3e-80 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 2e-74 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 5e-68 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 6e-67 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 7e-67 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 2e-66 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 2e-66 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 5e-66 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 1e-65 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 2e-65 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 3e-65 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 5e-63 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 3e-56 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 1e-55 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 2e-55 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 5e-55 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 2e-54 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 5e-53 | ||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 8e-52 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 3e-45 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 1e-44 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 2e-44 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 2e-44 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 7e-44 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 9e-44 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 3e-43 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 4e-43 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 4e-41 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 4e-41 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 5e-40 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 5e-40 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 5e-40 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 1e-39 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 1e-37 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 1e-36 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 8e-35 | ||
| 1tqy_B | 415 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 4e-17 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 1e-15 | ||
| 2hg4_A | 917 | Structure Of The Ketosynthase-acyltransferase Didom | 9e-14 | ||
| 3hhd_A | 965 | Structure Of The Human Fatty Acid Synthase Ks-Mat D | 4e-12 | ||
| 3zen_D | 3089 | Cryo-em Structure Of The Mycobacterial Fatty Acid S | 5e-12 | ||
| 2vz8_A | 2512 | Crystal Structure Of Mammalian Fatty Acid Synthase | 9e-12 | ||
| 2uv9_A | 1878 | Crystal Structure Of Fatty Acid Synthase From Therm | 1e-05 |
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 415 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
| >pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of Module 5 From Debs. Length = 917 | Back alignment and structure |
|
| >pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 | Back alignment and structure |
|
| >pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 | Back alignment and structure |
|
| >pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 | Back alignment and structure |
|
| >pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces Lanuginosus At 3.1 Angstrom Resolution. This File Contains The Alpha Subunits Of The Fatty Acid Synthase. The Entire Crystal Structure Consists Of One Heterododecameric Fatty Acid Synthase And Is Described In Remark 400 Length = 1878 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 539 bits (1391), Expect = 0.0
Identities = 165/388 (42%), Positives = 228/388 (58%), Gaps = 7/388 (1%)
Query: 149 QPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFP 208
+ HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F
Sbjct: 7 HHHSSGLVPRGSHMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFD 66
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
AAEI+ F D + K + R D + LY L A ++A+ + + L++ + GV+
Sbjct: 67 VHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVI 123
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
+ SG+GG+K D + L K++ P +P A NM S +AM G G SI+TAC
Sbjct: 124 VASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTAC 183
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
++SN I +A I G +VML GG++A++ P + GF A ALS DPT+AS P+D
Sbjct: 184 SSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFD 242
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCI 447
+R+GFVMGEG+G+L+LE LEHA+KRGA I AE G T DAYHMT PHP+G G I I
Sbjct: 243 KDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAI 302
Query: 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGA 507
+ AL + +S E V Y+NAH TSTPA + E A++ G+ + V+STKS GHLLGA
Sbjct: 303 KLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLLGA 360
Query: 508 AGAVEAIAVVQAIRTGWIHPNINLENPD 535
AGAVEAI ++A+R ++
Sbjct: 361 AGAVEAIVTIEAMRHNFVPMTAGTSEVS 388
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 532 bits (1373), Expect = 0.0
Identities = 170/376 (45%), Positives = 236/376 (62%), Gaps = 5/376 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 4 LEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDAT 63
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +KRMD+F + + A ++A+ D + +NEL+ + GVLIG+G+GG+KV D
Sbjct: 64 QFLDRKEAKRMDRFCHFAVCASQQAINDAKLV---INELNADEIGVLIGTGIGGLKVLED 120
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 121 QQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRL 180
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+G
Sbjct: 181 VQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 240
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+L+LEELE A RGAKIY E G + T DAYH+T P PDG G I AL SG+ E
Sbjct: 241 ILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEM 300
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
V+YINAH TSTPA D+ E +A+ G + + V+STKSM GHLLG +G +EA+A V A
Sbjct: 301 VSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMA 360
Query: 520 IRTGWIHPNINLENPD 535
I + P INLENPD
Sbjct: 361 IAEDKVPPTINLENPD 376
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 530 bits (1369), Expect = 0.0
Identities = 173/376 (46%), Positives = 246/376 (65%), Gaps = 5/376 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K ++MD F+ Y + AG +A+ D G+ + E + ++ G IGSG+GG+ + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGLE---ITEENATRIGAAIGSGIGGLGLIEE 131
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+L +K++PF VP NM + L + G GP+ SI+TA + I +AA
Sbjct: 132 NHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARI 191
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG
Sbjct: 192 IAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG 251
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+L+LEE EHAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+
Sbjct: 252 MLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQ 311
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
+ Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLLGAAGAVE+I + A
Sbjct: 312 IGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILA 371
Query: 520 IRTGWIHPNINLENPD 535
+R + P INL+NPD
Sbjct: 372 LRDQAVPPTINLDNPD 387
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 527 bits (1359), Expect = 0.0
Identities = 158/376 (42%), Positives = 243/376 (64%), Gaps = 6/376 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
M ++RVVVTG+G V+P+G++ + + N +GV+G++++ + FP KIAAE+K F +
Sbjct: 1 MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVE 60
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
++ K +++MD+F Y + + + A+ D G+ +++ + ++ GV IGSG+GGM+ F
Sbjct: 61 KYLEKKEARKMDRFTHYAIASAEMAVQDSGLV---IDDSNANRVGVWIGSGIGGMETFET 117
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
E +++++PF VP +MGS +++ G G N + TACAT+ I +A
Sbjct: 118 QYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKV 177
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG+A+ M+ GG++A + + L GF A +ALS N DP A RP+D +RDGF++GEGAG
Sbjct: 178 IERGDADAMITGGAEAPITKMSLAGFTANKALS-LNPDPETACRPFDKDRDGFIIGEGAG 236
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+++LEE EHAK RGAKIYAE G T DAYH+T P P+G G ++ A+ +G++ +
Sbjct: 237 IVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDK 296
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
V+YINAH TSTP D E QA+ FG++ + L ++STKSM GH LGA+G +EAI +
Sbjct: 297 VDYINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSMTGHTLGASGGIEAIFALLT 356
Query: 520 IRTGWIHPNINLENPD 535
IR I P I+L+N D
Sbjct: 357 IRDNIIAPTIHLKNQD 372
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 526 bits (1357), Expect = 0.0
Identities = 150/389 (38%), Positives = 221/389 (56%), Gaps = 12/389 (3%)
Query: 155 TTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAE 214
+ + + + +RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA
Sbjct: 12 SIEGRSRLH-RRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAY 70
Query: 215 IKS------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
+ F+ +V+ K M + + A + A+ D G +E D+ GV
Sbjct: 71 VPRGSDEGQFNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGW--HPQSEADQVATGVA 128
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
IG G+ ++V + + Y K++PF VP NM + +++ GPN+++STAC
Sbjct: 129 IGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAC 188
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
T + ++ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+
Sbjct: 189 TTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALS-TNSDPKLACRPFH 247
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCI 447
RDGFVMGEGA VL+LEE EHA +R A+IYAE G + DA H+T P P+G G + C+
Sbjct: 248 PKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCM 307
Query: 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLG 506
AL +GV E+++YINAHATSTP GD E +A+ H F + L V+STK GHLLG
Sbjct: 308 AAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLG 367
Query: 507 AAGAVEAIAVVQAIRTGWIHPNINLENPD 535
AAGAVEA A + P +NL+ +
Sbjct: 368 AAGAVEAAFTTLACYYQKLPPTLNLDCSE 396
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 526 bits (1357), Expect = 0.0
Identities = 157/376 (41%), Positives = 234/376 (62%), Gaps = 6/376 (1%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
+ KRVV+TGMG +SP+G++ + N L+GV+GI +I D + +A E+K+F+ +
Sbjct: 25 SQNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIE 84
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ K ++RMD+F Y + A ++A+ D + +NE + GV IGSG+GGM+ F
Sbjct: 85 DHIDKKEARRMDRFTQYAIVAAREAVKDAQLD---INENTADRIGVWIGSGIGGMETFEI 141
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
A + L ++++PF VP +M + +++DLG GPN + TACAT I A
Sbjct: 142 AHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKI 201
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
+ RG+A+ M+ GG++A + + + GF A RALS N+D A RP+ RDGFVMGEGAG
Sbjct: 202 VQRGDADAMITGGTEAPITHMAIAGFSASRALS-TNDDIETACRPFQEGRDGFVMGEGAG 260
Query: 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460
+L++E LE A+ RGA IYAE G T DAYH+T P P+G G ++ A+ +G+ +D
Sbjct: 261 ILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKD 320
Query: 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
V Y+NAH TSTP GD+ E +A+ + FG+ + L+V+STKSM GHLLGA G +EAI +
Sbjct: 321 VQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALS 380
Query: 520 IRTGWIHPNINLENPD 535
I+ + P I+ PD
Sbjct: 381 IKDSKVAPTIHAVTPD 396
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 526 bits (1358), Expect = 0.0
Identities = 151/396 (38%), Positives = 223/396 (56%), Gaps = 13/396 (3%)
Query: 150 PDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPT 209
E T+ M RVVVTG+G+VSPLG ++ + L+ G SG+ +
Sbjct: 10 GTLEAQTQGPGSMT-LRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSA 68
Query: 210 KIAAEIK--------SFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELD 261
K+ ++ F + V K ++MD+F+ + A +ALA+ G E
Sbjct: 69 KVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGW--APEAEQQ 126
Query: 262 KSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320
+ + ++ SG+GG +A+ ++++PF +PF +N+ + +++ + GP
Sbjct: 127 RERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPL 186
Query: 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-P 379
TACA S I +A I GEA+V+L GG++AA + LGGF A RALS ++ P
Sbjct: 187 GCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEP 246
Query: 380 TKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD 439
+ASRP+D +RDGFVMGEGA ++++E L+HA RGA+ AE G T+DAYHMT D
Sbjct: 247 VRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDD 306
Query: 440 GVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKS 499
G G + ++ AL V+ E V+Y+NAHATSTP GD E +AL FG G ++STKS
Sbjct: 307 GSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKS 366
Query: 500 MIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535
GHLLGAAGA+EA + A+R G + +NLE+PD
Sbjct: 367 ATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPD 402
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 523 bits (1351), Expect = 0.0
Identities = 177/373 (47%), Positives = 245/373 (65%), Gaps = 6/373 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+ ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAYL 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +R+D+F+ Y L A + AL D G+ +LD + G L+G+G+GGM+ +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLK---PEDLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVMGEGAGVL+
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 463
LE EHAKKRGA+IYAE G ++DA+H+TEPHP+G G L + +AL +G++ E V Y
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGY 297
Query: 464 INAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522
INAH TSTP GD E A+ FG + + L V+STKSMIGHLLGAAGAVEAIA VQA+
Sbjct: 298 INAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 523 GWIHPNINLENPD 535
G I P INLE+PD
Sbjct: 358 GVIPPTINLEDPD 370
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 520 bits (1343), Expect = 0.0
Identities = 164/389 (42%), Positives = 232/389 (59%), Gaps = 13/389 (3%)
Query: 157 KKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK 216
H +RVV+TG+GLVSPL + + LL G SG + F+ +IA I
Sbjct: 2 AHHHHHHMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIP 61
Query: 217 S-------FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 269
F+ D + PK +++D F++Y + A +AL D G N+ D+ + GVLI
Sbjct: 62 VGDGTNGTFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGW--HPENDEDQVRTGVLI 119
Query: 270 GSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACA 328
GSG+GG++ +A LR ++++PF +P N+ S +++ GPN+S+ TACA
Sbjct: 120 GSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACA 179
Query: 329 TSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS-QRNNDPTKASRPWD 387
T I +AA I G+A+VM+ GG+++ V I L GF AC+ALS +RN+DPT ASRP+D
Sbjct: 180 TGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYD 239
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCI 447
+RDGFVMGEGAG+++LEELEHA RGAKIYAE G + DA+H+T P G G C+
Sbjct: 240 EDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCM 299
Query: 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLG 506
AL +G+ ++++YINAH TST D E A+ G+ + ++STKS IGHLLG
Sbjct: 300 VAALKRAGIVPDEIDYINAHGTSTM-ADTIELGAVERVVGEAAAKISMSSTKSSIGHLLG 358
Query: 507 AAGAVEAIAVVQAIRTGWIHPNINLENPD 535
AAGA EA+ AIR +NL+NP
Sbjct: 359 AAGAAEAVFSTLAIRDNIAPATLNLDNPA 387
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 518 bits (1337), Expect = 0.0
Identities = 126/382 (32%), Positives = 190/382 (49%), Gaps = 12/382 (3%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
MK +RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 1 MK-RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVA 59
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
P+ RMD+ + + ++A A G+ + LD ++ GV +GS +
Sbjct: 60 EGFGPRELDRMDRASQFAVACAREAFAASGLD---PDTLDPARVGVSLGSAVAAATSLER 116
Query: 282 AIEALR-------ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 334
L + ++ + ++ A +A +G GP +ST C + +
Sbjct: 117 EYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSV 176
Query: 335 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394
NA I G A+VM G +D + PI + F A RA + RN+DP ASRP+D RDGFV
Sbjct: 177 GNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFV 236
Query: 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHS 454
+ EGA + +LE+ + A RGA+I+AE G + +AYHMT DG + I AL S
Sbjct: 237 LAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDES 296
Query: 455 GVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEA 513
D++YINAH + T D E A G++ R V+S KSM+GH LGA G++E
Sbjct: 297 RTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEI 356
Query: 514 IAVVQAIRTGWIHPNINLENPD 535
A V A+ G + P NL D
Sbjct: 357 AACVLALEHGVVPPTANLRTSD 378
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 516 bits (1332), Expect = 0.0
Identities = 120/390 (30%), Positives = 196/390 (50%), Gaps = 11/390 (2%)
Query: 155 TTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF--PTKIA 212
+ + VVVT + + + + + + LL G SGI +E T + KI
Sbjct: 2 SQPSTANGGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIG 61
Query: 213 AEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSG 272
+K + +RM G + G E +D + V++G+G
Sbjct: 62 GHLKDPVDS-HMGRLDMRRMSYVQRMGKLLGGQLWESAGSPE-----VDPDRFAVVVGTG 115
Query: 273 LGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSN 331
LGG + ++ + + +K++P V N +A++ + LG + +AC++ +
Sbjct: 116 LGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGS 175
Query: 332 FCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391
I +A I+ G+A+V +CGG + + + + F RA+S RN++P +ASRP+D +RD
Sbjct: 176 EAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRD 235
Query: 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKAL 451
GFV GE ++L+E EHAK RGAK A G TSDA+HM P DGV + ++L
Sbjct: 236 GFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSL 295
Query: 452 AHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAV 511
+G+S D++++NAH T+TP GD E A+ V + KS +GH +GA GA+
Sbjct: 296 ELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQ--AAVYAPKSALGHSIGAVGAL 353
Query: 512 EAIAVVQAIRTGWIHPNINLENPDAVVAID 541
E++ V +R G I P +N E PD + +D
Sbjct: 354 ESVLTVLTLRDGVIPPTLNYETPDPEIDLD 383
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 512 bits (1320), Expect = e-180
Identities = 119/376 (31%), Positives = 180/376 (47%), Gaps = 9/376 (2%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTS-FPTKIAAEIKSFST 220
KRVV+TGMG V+ LG D L G + + + +D T++AA + F+
Sbjct: 3 GSMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQ 62
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
K ++ M + +Y + A + ALAD G D + + GV GS G ++
Sbjct: 63 PADWPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIR 120
Query: 281 DAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
L + + + +++ G S+ACA+ + I A
Sbjct: 121 AFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGRIVPTSSACASGSQAIGYAYE 180
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
+I G+ +ML GG++ + F A S RN++P RP+D RDG V+GEGA
Sbjct: 181 NIAMGKQTLMLAGGAEEL-SGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGA 239
Query: 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459
L+LEE EHAK RGA I+AE G SD HMT+P + ++ AL + +
Sbjct: 240 ATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTAS--TMARAMQLALEDAKLDAN 297
Query: 460 DVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
+ Y+NAH TST GD+ E QA FG+ + ++S KS +GH LGA GA+EA ++
Sbjct: 298 AIAYVNAHGTSTDRGDVAESQATARTFGER--MPISSLKSYVGHTLGACGALEAWWTIEM 355
Query: 520 IRTGWIHPNINLENPD 535
++ W P +NL D
Sbjct: 356 MKRNWYAPTLNLTEVD 371
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 509 bits (1314), Expect = e-178
Identities = 126/398 (31%), Positives = 195/398 (48%), Gaps = 15/398 (3%)
Query: 148 VQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSF 207
V + T VVVTG+ + + L + + + LL+ SGI ++ F
Sbjct: 15 VPRGSHMVT----GKAFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEF 70
Query: 208 --PTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
P +I + D + +RM ++ + G E D ++
Sbjct: 71 DLPVRIGGHLL-EEFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEV-----DTNRL 124
Query: 266 GVLIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324
V IG+GLG + + + +R K ++P V N +A + ++ +
Sbjct: 125 MVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPV 184
Query: 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKAS 383
+ACA+ I A I+ GEA+ +CGG + + + + GF R +S N+DP A
Sbjct: 185 SACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGAC 244
Query: 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGV 443
RP+D +RDGFV GEG +LL+E EHAK RGA I A G S TSD +HM P P+G
Sbjct: 245 RPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERA 304
Query: 444 ILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGH 503
I +A+ +G++ D++++NAHAT T GD+ E +A+ + G NR V + KS +GH
Sbjct: 305 GHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNR-PAVYAPKSALGH 363
Query: 504 LLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
+GA GAVE+I V A+R I P +NL N D + +D
Sbjct: 364 SVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLD 401
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 507 bits (1309), Expect = e-178
Identities = 154/393 (39%), Positives = 227/393 (57%), Gaps = 24/393 (6%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTS--------------FPTK 210
+RVVVTG+G+V+PLG + + L++G GI + D +K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 211 IAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
+AA + S G L SK + F+ Y + A +AL D E +K + GV
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLP--TEEEEKERTGV 118
Query: 268 LIGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTA 326
IG G+G + +A + + ++++PF +P NM S ++M G+ GPN++ TA
Sbjct: 119 SIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTA 178
Query: 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRP 385
CAT I +A I G+A+VM+ GG+++++ + + GF RALS + N P +ASRP
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238
Query: 386 WDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVIL 445
+D +RDGFV+GEG+GV++LEE EHAK+RGAKIYAE G + DA+H+T+P DG G +L
Sbjct: 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVL 298
Query: 446 CIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ---NRGLRVNSTKSMIG 502
+ +AL SG+ ++Y+NAHATSTP GD E +A+ F + + L +STK G
Sbjct: 299 AMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATG 358
Query: 503 HLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535
HLLGAAGAVEAI + AI G +N++NPD
Sbjct: 359 HLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPD 391
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 499 bits (1288), Expect = e-175
Identities = 94/376 (25%), Positives = 161/376 (42%), Gaps = 11/376 (2%)
Query: 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 221
K V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F
Sbjct: 6 DDDKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAP 65
Query: 222 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 281
+ +L + D LTA AL D L GV+ + GG +
Sbjct: 66 DHIPGRLLPQTDPSTRLALTAADWALQDAKAD---PESLTDYDMGVVTANACGGFDFTHR 122
Query: 282 AIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
L K ++ + + + +++ G GP+ ++ A + +A
Sbjct: 123 EFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRT 182
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400
I RG +++ GG D+A+ P G +A +S DP +A P+D G+V GEG
Sbjct: 183 IRRG-TPLVVSGGVDSALDPWGWVSQIASGRISTA-TDPDRAYLPFDERAAGYVPGEGGA 240
Query: 401 VLLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459
+L+LE+ A+ RG Y E G + T D + G+ I AL +G E
Sbjct: 241 ILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS---GRPAGLERAIRLALNDAGTGPE 297
Query: 460 DVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQA 519
DV+ + A P D E +A+ FG G+ V K+ G L G ++ + + +
Sbjct: 298 DVDVVFADGAGVPELDAAEARAIGRVFG-REGVPVTVPKTTTGRLYSGGGPLDVVTALMS 356
Query: 520 IRTGWIHPNINLENPD 535
+R G I P + +
Sbjct: 357 LREGVIAPTAGVTSVP 372
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 482 bits (1244), Expect = e-168
Identities = 139/389 (35%), Positives = 201/389 (51%), Gaps = 11/389 (2%)
Query: 149 QPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFP 208
+ + + +RVVVTGMG+VS +G + +L E SGIS E + F
Sbjct: 7 HHMGTLEAQTQGPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFR 66
Query: 209 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 268
++ + V + + + + A +A+AD G+TE+ E+ + G++
Sbjct: 67 CQVHG-APDIDIESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGII 122
Query: 269 IGSGLGGMKVFYDAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
+GSG + D+ + R K++ PF VP A ++ SA LA G NYSIS+AC
Sbjct: 123 MGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSAC 182
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387
ATSN CI NA I G+ + M GG + + + S+ N+ P+ ASR +D
Sbjct: 183 ATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYD 242
Query: 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCI 447
NRDGFV+ GAGVL+LE+LE A RGAKIY E G TSD Y M P G G I C+
Sbjct: 243 KNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVA--PSGEGAIRCM 300
Query: 448 EKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLG 506
+ AL+ ++YIN HATSTPAGD E +A+ FG + +TKS+ GH LG
Sbjct: 301 KMALSTVT---SKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSLG 357
Query: 507 AAGAVEAIAVVQAIRTGWIHPNINLENPD 535
A G EAI + ++ +I + ++E D
Sbjct: 358 ATGVQEAIYSLLMMQNNFICESAHIEELD 386
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 480 bits (1239), Expect = e-167
Identities = 136/374 (36%), Positives = 203/374 (54%), Gaps = 13/374 (3%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K+ + M +Y + ++A+AD G++ + + + G++ GSG G + +
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPE--AYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 285 ALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
A+R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMGEGAGV 401
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+ G G+
Sbjct: 179 LGKQDIVFAGGGEELCWEMA-CEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGM 237
Query: 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 461
+++EELEHA RGA IYAE G TSD M P G G + C++ A+ +
Sbjct: 238 VVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAMHGVD---TPI 292
Query: 462 NYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIR 521
+Y+N+H TSTP GD+KE A+ FG +++TK+M GH LGAAG EAI + +
Sbjct: 293 DYLNSHGTSTPVGDVKELAAIREVFGDK-SPAISATKAMTGHSLGAAGVQEAIYSLLMLE 351
Query: 522 TGWIHPNINLENPD 535
G+I P+IN+E D
Sbjct: 352 HGFIAPSINIEELD 365
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 384 bits (987), Expect = e-119
Identities = 72/423 (17%), Positives = 143/423 (33%), Gaps = 42/423 (9%)
Query: 146 VAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT 205
V V+ D E K + G + P+ ++ + G + +
Sbjct: 926 VIVEEDLEPFEASK---ETAEQFKHQHGDKVDIFEIPETG-EYSVKLLKGAT-LYIPKAL 980
Query: 206 SFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGKKALADGGIT--EDVMNELD 261
F +A +I + ++ + + ++D L++L + +A GIT ++ +
Sbjct: 981 RFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVH 1040
Query: 262 KSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321
S+ G GSG+GG+ + N M + + + + GP
Sbjct: 1041 VSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIK 1100
Query: 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND--- 378
+ ACATS + I+ G+A + + GG D G F +A S +
Sbjct: 1101 TPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEGSFEFGNMKATSNTLEEFEH 1159
Query: 379 ---PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTE 435
P + SRP R+GF+ +GAG+ ++ + + A K G IY + +D +
Sbjct: 1160 GRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSV 1219
Query: 436 PHPDGVGVIL---------------------CIEKALAHSGVSR---EDVNYINAHATST 471
P P G G++ + + + ++ + A
Sbjct: 1220 PAP-GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEI 1278
Query: 472 PAGDIKEYQALIHCFGQNRGLR-VNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNIN 530
P+ D E+ N + + + G+ A G ++
Sbjct: 1279 PSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLG 1338
Query: 531 LEN 533
+ +
Sbjct: 1339 VAS 1341
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-46
Identities = 40/204 (19%), Positives = 66/204 (32%), Gaps = 10/204 (4%)
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
+G S L R L R K ++ + E +
Sbjct: 1224 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQ-IKDWVENEL---EALKLEAEEIP 1279
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
++ E +R +I+ E + I + ALA G++ +D+
Sbjct: 1280 SEDQNEFLLERTREIHNEAES-QLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLG 1338
Query: 463 YINAHATSTPAGDIKEYQALIHCFGQNRG-----LRVNSTKSMIGHLLGAAGAVEAIAVV 517
+ H TST A D E + + K + GH GAAGA +
Sbjct: 1339 VASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGAL 1398
Query: 518 QAIRTGWIHPNINLENPDAVVAID 541
Q + +G I N N +N D ++
Sbjct: 1399 QILNSGIIPGNRNADNVDKILEQF 1422
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 313 bits (804), Expect = 8e-94
Identities = 73/351 (20%), Positives = 127/351 (36%), Gaps = 24/351 (6%)
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGK 244
+ G + + F +A +I + + + P + +++D LY+L +
Sbjct: 1137 QYTVRLRKGAT-LLIPKALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVA 1195
Query: 245 KALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFAT 302
+AL GIT + + S+ G IGSG+GG + +
Sbjct: 1196 EALLSSGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFV 1255
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSD-----AA 357
M + + + L GP + ACAT+ + + I++G+A V L GG D +
Sbjct: 1256 NTMAAWVNMLLLSSTGPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGS 1315
Query: 358 VIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417
+G + R +P + SRP R+GF+ +G GV ++ + A + G I
Sbjct: 1316 YEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPI 1375
Query: 418 YAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY-----------INA 466
Y S +D + P P G GV+ + + D+ Y I
Sbjct: 1376 YGIVAMTSTATDKIGRSVPAP-GQGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQ 1434
Query: 467 HATSTPAGDIKEYQALIHCFGQNRG--LRVNSTKSMIGHLLGAAGAVEAIA 515
S +E A+ + G + H+ A EA A
Sbjct: 1435 WKESEYLYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEA 1485
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 9e-32
Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 8/150 (5%)
Query: 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGV-GVILCIEKALAHSGV 456
+E + ++R I E R ++A I + ALA G+
Sbjct: 1455 SEEDGPFDETAYLRERTEHIEREARRQ--EAEAQTSFGNEFWRRDSRIAPLRGALATWGL 1512
Query: 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRG-----LRVNSTKSMIGHLLGAAGAV 511
+ +D+ + H TST A D E + + K + GH GAAGA
Sbjct: 1513 TIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAW 1572
Query: 512 EAIAVVQAIRTGWIHPNINLENPDAVVAID 541
+Q + TG + N N +N D V+
Sbjct: 1573 MLNGCLQVLNTGIVPGNRNADNVDKVMEQF 1602
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 292 bits (748), Expect = 2e-86
Identities = 65/377 (17%), Positives = 132/377 (35%), Gaps = 39/377 (10%)
Query: 187 NNLLEGVSGISEIETFDCTSFPTKIAAEIKS-FSTDGWVAP-KLSKRMDKFMLYLLTAGK 244
++ + G + + F +A +I + ++ + + ++D L++L +
Sbjct: 1162 EYSVKLLKGAT-LYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVV 1220
Query: 245 KALADGGIT--EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFAT 302
+A GIT ++ + S+ G GSG+GG+ + N
Sbjct: 1221 EAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFI 1280
Query: 303 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG 362
M + + + + GP + ACATS + I+ G+A + + GG D G
Sbjct: 1281 NTMSAWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEG 1339
Query: 363 LGGFVACRALSQRNND------PTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
F +A S + P + SRP R+GF+ +GAG+ ++ + + A K G
Sbjct: 1340 SFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVP 1399
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR------------------ 458
IY + +D + P P G G++ + + +
Sbjct: 1400 IYGIVAMAATATDKIGRSVPAP-GKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQ 1458
Query: 459 ------EDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLR-VNSTKSMIGHLLGAAGAV 511
++ + A P+ D E+ N + + + G+
Sbjct: 1459 IKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFY-KRDP 1517
Query: 512 EAIAVVQAIRTGWIHPN 528
+ A+ T + +
Sbjct: 1518 RIAPLRGALATYGLTID 1534
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 2e-35
Identities = 40/204 (19%), Positives = 67/204 (32%), Gaps = 10/204 (4%)
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
+G S L R L R K ++ + E +
Sbjct: 1423 KGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQ-IKDWVENEL---EALKLEAEEIP 1478
Query: 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462
++ E +R +I+ E + I + ALA G++ +D+
Sbjct: 1479 SEDQNEFLLERTREIHNEAES-QLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLG 1537
Query: 463 YINAHATSTPAGDIKEYQALIHCFG-----QNRGLRVNSTKSMIGHLLGAAGAVEAIAVV 517
+ H TST A D E + + + K + GH GAAGA +
Sbjct: 1538 VASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGAL 1597
Query: 518 QAIRTGWIHPNINLENPDAVVAID 541
Q + +G I N N +N D ++
Sbjct: 1598 QILNSGIIPGNRNADNVDKILEQF 1621
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 150 bits (379), Expect = 3e-38
Identities = 75/294 (25%), Positives = 119/294 (40%), Gaps = 25/294 (8%)
Query: 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNM 305
A+ DGGI L + GV +G DA EAL + + + + M
Sbjct: 89 AIVDGGI---NPASLRGTSTGVWVGV------SSSDASEALSRDPETLVGYSMIGCQRAM 139
Query: 306 GSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGG 365
+ L+ + GP+ +I TAC++S + +A I GE + + GG + + P
Sbjct: 140 MANRLSFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQ 199
Query: 366 FVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS 425
F+ LS R +D G+ E +LL + A++ +YA
Sbjct: 200 FMKLGMLS-----QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLARR----VYATILNAG 250
Query: 426 FTSDAYH---MTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQAL 482
+D +T P G I A +G E + YI AH T T GD +E +
Sbjct: 251 TNTDGSKEQGVT--FPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELNGI 308
Query: 483 IHCFGQNR--GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
++ R L + STKS +GH A+G I V+ ++ G PN++ P
Sbjct: 309 VNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTP 362
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-31
Identities = 77/254 (30%), Positives = 112/254 (44%), Gaps = 18/254 (7%)
Query: 300 FATTNMGSAM---LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
T S +A LG GP ++ TAC++ + A + R E + L GG
Sbjct: 169 VGTGTASSVASGRVAYCLGLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTV 228
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
P F + L+ +P+ DGF + EGAGVL+L+ L A++ G
Sbjct: 229 MSSPGAFTEFRSQGGLA-----ADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRP 283
Query: 417 IYAEFRGGSFTSDAYH--MTEPH-PDGVGVILCIEKALAHSGVSREDVNYINAHATSTPA 473
+ A RG + D +T P P VI +AL ++GV DV+Y+ AH T T
Sbjct: 284 VLAVLRGSAVNQDGASNGLTAPSGPAQQRVI---RRALENAGVRAGDVDYVEAHGTGTRL 340
Query: 474 GDIKEYQALIHCFGQNRG----LRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNI 529
GD E AL+ +G R L + S KS IGH AAG + V A+R G + +
Sbjct: 341 GDPIEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTL 400
Query: 530 NLENPDAVVAIDSG 543
+ + P + D G
Sbjct: 401 HFDEPSPQIEWDLG 414
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 8e-31
Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 18/254 (7%)
Query: 300 FATTNMGSAM---LAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDA 356
T + ++ +G GP+ S+ TAC++S + A + +GE+++ + GG+
Sbjct: 147 SVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAV 206
Query: 357 AVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAK 416
P F RAL+ S+ + DGF EG ++LLE L A++ G +
Sbjct: 207 MATPGVFVDFSRQRALA-----ADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHE 261
Query: 417 IYAEFRGGSFTSD--AYHMTEPH-PDGVGVILCIEKALAHSGVSREDVNYINAHATSTPA 473
+ A RG + D + ++ P P VI +AL G+ DV+ + AH T T
Sbjct: 262 VLAVVRGSALNQDGASNGLSAPSGPAQRRVI---RQALESCGLEPGDVDAVEAHGTGTAL 318
Query: 474 GDIKEYQALIHCFGQNRG----LRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNI 529
GD E AL+ +G++R L + S KS IGH AAG + VV A+R G + +
Sbjct: 319 GDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATL 378
Query: 530 NLENPDAVVAIDSG 543
++E P V SG
Sbjct: 379 HVEEPTPHVDWSSG 392
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-27
Identities = 93/397 (23%), Positives = 152/397 (38%), Gaps = 67/397 (16%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISE---------------------IETFDCT 205
VV+ GM P F++NL+ GV +++ + FD +
Sbjct: 6 VVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDAS 65
Query: 206 SFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 265
F G V PK + MD + LL +A+ DGGI + L +
Sbjct: 66 FF--------------G-VHPKQAHTMDPQLRLLLEVTYEAIVDGGI---NPDSLRGTHT 107
Query: 266 GVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAM---LAMDLGWMGPNYS 322
GV +G + EAL + + + + M L+ + GP+ +
Sbjct: 108 GVWVGVS------GSETSEALSRDPETLVGY---SMVGCQRAMMANRLSFFFDFRGPSIA 158
Query: 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKA 382
+ TAC++S + NA I G+ + GG + + P F+ LS P
Sbjct: 159 LDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGT 213
Query: 383 SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH---MTEPHPD 439
+ +D +G+ EG +LL + A+ ++YA +D + +T P
Sbjct: 214 CKAFDTAGNGYCRSEGVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPS-- 267
Query: 440 GVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR--GLRVNST 497
G I +GV+ E YI AH T T GD +E + R L + ST
Sbjct: 268 GDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGST 327
Query: 498 KSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
KS +GH A+G V+ ++ G PN++ +P
Sbjct: 328 KSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSP 364
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 2e-09
Identities = 74/591 (12%), Positives = 142/591 (24%), Gaps = 189/591 (31%)
Query: 19 CMSFTCGSRDPHQPPSVLRRYTNNK-REGLSAARRRKLSAKCGVGGEVVNGSLVSSFSGS 77
+V R K R+ L R K GV G SG
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-----------SGK 163
Query: 78 SHSIQSLMASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTAT----LNRRQRRLR 133
+ + + C Y F + NS T L + ++
Sbjct: 164 ---------TWVALDVCLSY----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 134 LNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNN---LL 190
N +RS + + + + + +K K Y N +L
Sbjct: 211 PNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKP-------------------YENCLLVL 250
Query: 191 EGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALA 248
V F+ C KI LLT
Sbjct: 251 LNVQNAKAWNAFNLSC-----KI---------------------------LLTT-----R 273
Query: 249 DGGITEDVMNELDKSKCGVLIGSGLG---GMKVFYDAI----EALRISYKKMNPFCVPFA 301
+T+ + L + + + L NP +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--- 330
Query: 302 TTNMGSAMLAMDLG----WMGPNYS-ISTACATSNFCILNAANH--------IIRGEANV 348
++ + + L W N ++T +S +L A + + A++
Sbjct: 331 --SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 349 ------MLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
++ + + + + +L ++ + S P I +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIP-SIYLE----------- 434
Query: 403 LLEELE-----HAKKRGA-KIYAEFRGGSFTSD----------AYHMTEPHPDGVGVILC 446
L +LE H I F +H+ +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 447 --------IEKALAHSGVSREDVNYINAHATSTPA-GDIKEYQALI--HCFGQNRGLRVN 495
+E+ + H + NA + +K Y+ I + R VN
Sbjct: 495 MVFLDFRFLEQKIRHDSTAW------NASGSILNTLQQLKFYKPYICDNDPKYER--LVN 546
Query: 496 STKSMIGHLLGAAGAV----EAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542
+ I L + +++ I L D + ++
Sbjct: 547 A----ILDFLPKIEENLICSKYTDLLR----------IALMAEDEAIFEEA 583
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 100.0 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 100.0 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 100.0 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.98 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.98 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.98 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.98 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.97 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.97 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.97 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.97 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.97 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.96 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.95 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.95 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.95 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.94 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.94 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.93 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.91 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.91 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.91 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.9 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.89 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.86 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.85 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.83 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.76 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.72 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.72 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 99.7 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 99.7 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 99.7 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.69 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.68 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 99.68 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.66 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.65 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 99.65 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 99.63 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 99.63 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.62 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 99.62 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 99.61 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 99.59 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 99.57 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 99.52 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 99.52 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 99.47 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 99.42 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 99.41 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 99.36 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.32 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 99.29 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 99.02 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 96.82 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 96.54 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 95.75 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 95.23 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 94.43 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 94.35 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 94.07 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 93.37 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 92.16 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 91.97 | |
| 2l3v_A | 79 | ACP, acyl carrier protein; structural genomi seatt | 91.34 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 89.95 | |
| 1af8_A | 86 | Actinorhodin polyketide synthase acyl carrier Pro; | 89.54 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 89.13 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 88.92 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 88.8 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 88.36 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 87.99 | |
| 2dnw_A | 99 | Acyl carrier protein; ACP, fatty acid biosynthesis | 87.6 | |
| 1x3o_A | 80 | Acyl carrier protein; structural genomics, riken s | 85.65 | |
| 2cnr_A | 82 | FAS, ACP, acyl carrier protein; polykdetide, phosp | 85.57 | |
| 2lte_A | 103 | Specialized acyl carrier protein; APO protein, tra | 83.98 | |
| 1klp_A | 115 | ACP, ACPM, meromycolate extension acyl carrier pro | 83.14 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 82.39 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 81.98 | |
| 2kwl_A | 84 | ACP, acyl carrier protein; structural genomics, se | 81.98 | |
| 2qnw_A | 82 | Acyl carrier protein; malaria, SGC, structural gen | 81.81 |
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-71 Score=588.70 Aligned_cols=380 Identities=46% Similarity=0.754 Sum_probs=356.6
Q ss_pred CCCCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHH
Q 008700 160 PHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (557)
Q Consensus 160 ~~~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~ 239 (557)
+...+++|+|||||+++|.|.++++||++|++|+++++++++|+...++.++++++++||..+||++++++.|||+++|+
T Consensus 13 ~~~~~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~ 92 (427)
T 3ho9_A 13 ACVSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYG 92 (427)
T ss_dssp ----CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHH
T ss_pred CCCCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHH
Confidence 34456789999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCC
Q 008700 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (557)
Q Consensus 240 l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G 318 (557)
++++++||+|||++++ +++..++||++|+..+++....+.+..+ ..+...++|+.++....|..+++|++.||++|
T Consensus 93 l~aa~~AL~dAGl~~~---~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~G 169 (427)
T 3ho9_A 93 IVAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRG 169 (427)
T ss_dssp HHHHHHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHCCCCcc---cccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCCCC
Confidence 9999999999999986 4567899999999999887777766655 45667889999999999999999999999999
Q ss_pred CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 319 p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
|+++|+++|+|++.||+.|+++|++|+||++||||+|.+.+|..+..|...+.++..+.+|++.|+|||.+++|+++|||
T Consensus 170 p~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~G~v~geG 249 (427)
T 3ho9_A 170 PSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDG 249 (427)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCE
T ss_pred CeecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCccCCCCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999997777788899999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHH
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKE 478 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E 478 (557)
|+++||+++++|+++|++||++|+|++.++|+++.+.|.+++.++.++|+++|+++|++++||||||+|||||+.+|..|
T Consensus 250 AaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT~~~d~~e 329 (427)
T 3ho9_A 250 AGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAE 329 (427)
T ss_dssp EEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHH
T ss_pred EEEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEecCCcCCCcCHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 479 YQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 479 ~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
..++.++|+.. .++++++.|+++||++||||++++++++++|+++++||++|+++|||.++++.
T Consensus 330 ~~a~~~~~g~~~~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~ 394 (427)
T 3ho9_A 330 AQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDF 394 (427)
T ss_dssp HHHHHHHHGGGGGTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCCBC
T ss_pred HHHHHHHhcccCCCeEEecchHhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Confidence 99999999854 46899999999999999999999999999999999999999999999999873
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-70 Score=581.60 Aligned_cols=378 Identities=45% Similarity=0.761 Sum_probs=352.3
Q ss_pred CCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHH
Q 008700 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (557)
Q Consensus 162 ~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~ 241 (557)
+.+++|+|||||+++|.|.+.++||++|.+|+++++++++|+...++.++.+++++||..++++++++++|||+++|+++
T Consensus 4 ~~m~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~ 83 (416)
T 1e5m_A 4 LEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVC 83 (416)
T ss_dssp --CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHH
T ss_pred CCCCCEEEEeeeEECCCCCCHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHHHHHH
Confidence 34578999999999999999999999999999999999999988888889999999999989999999999999999999
Q ss_pred HHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCe
Q 008700 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320 (557)
Q Consensus 242 aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~ 320 (557)
++++||+|||++++ ++++.|+|||+|+..+++...++++..+ ..+...++|+.++..+.+.++.++++.||++||+
T Consensus 84 aa~~Al~dAg~~~~---~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~ 160 (416)
T 1e5m_A 84 ASQQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPN 160 (416)
T ss_dssp HHHHHHHHHTCCCC---TTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCE
T ss_pred HHHHHHHHcCCChh---hcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCCCCce
Confidence 99999999999976 4557899999999988877666666554 4556778999999889999999999999999999
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceE
Q 008700 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
++|+++|+|++.||+.|+++|++|+||++||||+|.++++..+.+|..++.++..+.+|++.|+|||.+++|+++||||+
T Consensus 161 ~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~geGaa 240 (416)
T 1e5m_A 161 NCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG 240 (416)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEE
T ss_pred eCccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCCCceeeeeEE
Confidence 99999999999999999999999999999999999988999888999999998766678899999999999999999999
Q ss_pred EEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHH
Q 008700 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQ 480 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~ 480 (557)
++||+++++|+++|++||++|+|++.++|+++.+.|.|++.++.++|+++|+++|++++||||||+|+|||+++|++|.+
T Consensus 241 avvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~~D~~E~~ 320 (416)
T 1e5m_A 241 ILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETR 320 (416)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHH
T ss_pred EEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhHCCEEEEECCCCcCcCHHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 481 ALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 481 Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
+|.++|+.. .+++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++++.
T Consensus 321 al~~~~g~~~~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~ 383 (416)
T 1e5m_A 321 AIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDY 383 (416)
T ss_dssp HHHHHHGGGGGGSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSCC
T ss_pred HHHHHHcccCCCCeeeCcchhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccc
Confidence 999999854 35889999999999999999999999999999999999999999999998763
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-69 Score=577.73 Aligned_cols=371 Identities=33% Similarity=0.491 Sum_probs=348.6
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCC-CCCccccccccCCCCCCCCChhhhccCCHHHHHHHH
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT-SFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~-~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~ 241 (557)
.+++|+|||||+++|.|.+.++||++|++|++++++++.|+.. .++.++.+++++||..+||++++.+.||++++|+++
T Consensus 4 ~m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~ 83 (412)
T 4ewg_A 4 SMKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVR 83 (412)
T ss_dssp CCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHH
T ss_pred CCCEEEEEeeEEECCCcCCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHH
Confidence 3578999999999999999999999999999999999998876 788888999999999999999999999999999999
Q ss_pred HHHHHHHHCCC-ChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCC
Q 008700 242 AGKKALADGGI-TEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (557)
Q Consensus 242 aa~eALedAGl-~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp 319 (557)
++++||+|||+ +++ +++..++||++|+..+++...++++..+ ..+...++|+.++....+.++++|++.||++||
T Consensus 84 aa~~Al~dAGl~~~~---~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp 160 (412)
T 4ewg_A 84 ASELALADAGFAGDE---SISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLKGR 160 (412)
T ss_dssp HHHHHHHHHTCTTCG---GGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTCCSC
T ss_pred HHHHHHHhcCCCCcc---ccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCCCCC
Confidence 99999999999 655 4568999999999999988888877766 455667889988999999999999999999999
Q ss_pred eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCce
Q 008700 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (557)
Q Consensus 320 ~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGA 399 (557)
+++|+++|+|++.||+.|+++|++|+||++||||+|. +++..+..|...+.++....+|++.|+|||.+++|+++||||
T Consensus 161 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~~G~~~geGA 239 (412)
T 4ewg_A 161 IVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGA 239 (412)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTCCCBCBBCEE
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCceECeE
Confidence 9999999999999999999999999999999999999 888888999999999987788899999999999999999999
Q ss_pred EEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHH
Q 008700 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEY 479 (557)
Q Consensus 400 aalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~ 479 (557)
+++||+++++|+++|++||++|+|++.++|+++.+.| ++.++.++|+++|+++|++++||||||+|||||+.+|++|.
T Consensus 240 aavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p--~~~~~~~ai~~Al~~Agl~~~dId~ve~Hgtgt~~~D~~E~ 317 (412)
T 4ewg_A 240 ATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAES 317 (412)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSC--CHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCHHHHHHHH
T ss_pred EEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCccccHHHH
Confidence 9999999999999999999999999999999987655 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC-CCC
Q 008700 480 QALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVV-AID 541 (557)
Q Consensus 480 ~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~-~~~ 541 (557)
+++.++|+.. ++|++.|+++||++||+|++++++++++|+++++||++|+++|||.+ +++
T Consensus 318 ~al~~~~~~~--~~v~s~K~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~~~~ 378 (412)
T 4ewg_A 318 QATARTFGER--MPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLD 378 (412)
T ss_dssp HHHHHHHCTT--CEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTSCCCE
T ss_pred HHHHHHcCCC--CeeeCccccccccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCcccccc
Confidence 9999999864 88999999999999999999999999999999999999999999998 665
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-69 Score=577.80 Aligned_cols=377 Identities=43% Similarity=0.747 Sum_probs=355.8
Q ss_pred CCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHH
Q 008700 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLT 241 (557)
Q Consensus 162 ~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~ 241 (557)
|++++|+|||||+++|.|.++++||++|.+|+++++++++|+...++....+++++||.++||++++++.|||+++|+++
T Consensus 1 M~~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~ 80 (413)
T 3o04_A 1 MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIA 80 (413)
T ss_dssp CCCCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGTSCHHHHTTSCHHHHHHHH
T ss_pred CCCCCEEEEEeEEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhccCHHHHhhCCHHHHHHHH
Confidence 45678999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCe
Q 008700 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPN 320 (557)
Q Consensus 242 aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~ 320 (557)
++++||+|||++++ ++++.|+|||+|+..++.......+..+ ..+...++|+.++....++++.+|++.||++||+
T Consensus 81 Aa~~AL~dAGl~~~---~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~ 157 (413)
T 3o04_A 81 SAEMAVQDSGLVID---DSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGIN 157 (413)
T ss_dssp HHHHHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTCCSCE
T ss_pred HHHHHHHHcCCChh---HcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCCCCcc
Confidence 99999999999986 5567999999999999988777777665 4566778999999999999999999999999999
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceE
Q 008700 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
++|+++|+|++.||+.|+++|++|+||++||||+|.++++..+..|...+.++. ..+|++.|+|||.+++|+++||||+
T Consensus 158 ~~v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~g~~~gdGAa 236 (413)
T 3o04_A 158 STTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAG 236 (413)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSCCTTBTTCCSBCBBCEEE
T ss_pred eeecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccC-CCCCCCCcCCCcCCCCCceEeccEE
Confidence 999999999999999999999999999999999999999999999999999884 5568899999999999999999999
Q ss_pred EEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHH
Q 008700 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQ 480 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~ 480 (557)
++||+++++|+++|++||++|+|++.++|+++.+.|.|++.++.++++++|+++|++++||||||+|||||+++|++|.+
T Consensus 237 avvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ve~HgtgT~~~d~~e~~ 316 (413)
T 3o04_A 237 IVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQ 316 (413)
T ss_dssp EEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHHHHHH
T ss_pred EEEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 481 ALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 481 Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
+|.++|+.. .++++++.|+++||++||+|++++++++++|+++++||++|+++|||.++++.
T Consensus 317 al~~~~~~~~~~~~v~s~k~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~ 379 (413)
T 3o04_A 317 AIKTVFGEHAKKLAISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDY 379 (413)
T ss_dssp HHHHHHGGGTTTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSBCSSCCSCC
T ss_pred HHHHHhcccCCCCceecccccccccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCccc
Confidence 999999864 46899999999999999999999999999999999999999999999999874
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-69 Score=575.04 Aligned_cols=374 Identities=42% Similarity=0.726 Sum_probs=349.7
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|+|||||+++|.|.++++||++|.+|+++++++++|+...++.++.+++++||..++++++++++|||+++|++++++
T Consensus 28 ~~vaI~G~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa~ 107 (437)
T 2gqd_A 28 KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAAR 107 (437)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHHHHHH
T ss_pred CCEEEEEeeEECCCCCCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988888889999999999888999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv 323 (557)
+||+|||++++ ++++.|+|||+|+..+++...++.+..+ ..+...++|+.++....+.++.+|++.||++||+++|
T Consensus 108 ~AL~dAGl~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~gp~~~v 184 (437)
T 2gqd_A 108 EAVKDAQLDIN---ENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGAT 184 (437)
T ss_dssp HHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSSEECB
T ss_pred HHHHHcCCCcc---ccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCCCCceEEe
Confidence 99999999876 4557899999999988877666665554 4556678899888888999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||+.|+++|++|+||+|||||+|.++++..+..|..++.++. +.+|++.|+|||.+++|+++|||++++|
T Consensus 185 ~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~-~~~p~~~~~pfd~~~~G~v~geGaaavv 263 (437)
T 2gqd_A 185 VTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILV 263 (437)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CCCTTTSSCTTCTTCCSBCBBCEEEEEE
T ss_pred cCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccC-CCCCccccCCCCCCCCCceeeceEEEEE
Confidence 999999999999999999999999999999999889998899999998875 4458889999999999999999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~ 483 (557)
|+++++|+++|++||++|+|++.++|+++.+.|.|++.++.++|+++|+++|++++||||||+|+|||+.+|++|.++|.
T Consensus 264 L~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~~D~~E~~al~ 343 (437)
T 2gqd_A 264 IESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIK 343 (437)
T ss_dssp EEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHH
T ss_pred ECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhhCCEEEEECCCCcCcCHHHHHHHH
Confidence 99999999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 484 HCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 484 ~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
++|+.. .+++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.|+++.
T Consensus 344 ~~fg~~~~~~~v~s~k~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~~ 403 (437)
T 2gqd_A 344 NTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDI 403 (437)
T ss_dssp HHHGGGGTSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSCCSSCCSBC
T ss_pred HHHhccCCCceeecchhhhcCChhhhhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccc
Confidence 999853 46899999999999999999999999999999999999999999999998874
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-69 Score=573.60 Aligned_cols=376 Identities=47% Similarity=0.801 Sum_probs=352.2
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|+|||||+++|.|.++++||++|++|+++++++++|+...++.++.+++ +||+++++++++.++|||+++|++++++
T Consensus 2 ~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~fd~~~~~~~~~~~~~d~~~~l~~~aa~ 80 (408)
T 1j3n_A 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAAQ 80 (408)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHHH
T ss_pred CCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeccccCcccCccceEEEE-ccChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999888888888989 8999989999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv 323 (557)
+||+|||++++ +++..++||++|+..+++....+++..+ ..+...++|+.++..+.+..+.+|++.||++||+++|
T Consensus 81 ~AL~dAGl~~~---~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~~v 157 (408)
T 1j3n_A 81 LALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTV 157 (408)
T ss_dssp HHHHHHTCCGG---GSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCCB
T ss_pred HHHHHcCCCcc---ccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCCCCceeCc
Confidence 99999999987 4567899999999998887766666554 4566778999888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||+.|+++|++|+||++||||+|.++++..+..|...+.++..+.+|++.|+|||.+++|+++|||++++|
T Consensus 158 ~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dg~v~geGaaavv 237 (408)
T 1j3n_A 158 VTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237 (408)
T ss_dssp CCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEEE
T ss_pred cCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCCceEEeeeEEEEE
Confidence 99999999999999999999999999999999989999999999999999777778889999999999999999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHH
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALI 483 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~ 483 (557)
|+++++|+++|++||++|+|++.++|+++.+.|.+++.++.++|+++|+++|++++||||||+|+|||+.+|++|.+++.
T Consensus 238 L~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~gD~~E~~al~ 317 (408)
T 1j3n_A 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIK 317 (408)
T ss_dssp EEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHH
T ss_pred EeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCHHHHHHHH
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 008700 484 HCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGH 544 (557)
Q Consensus 484 ~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~ 544 (557)
++|+.. .++++++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++++.-+
T Consensus 318 ~~~g~~~~~~~v~s~k~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~v~ 379 (408)
T 1j3n_A 318 RVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP 379 (408)
T ss_dssp HHHHHHHTTCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBCCS
T ss_pred HHhcCcCCCceEECchhhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCC
Confidence 999853 4689999999999999999999999999999999999999999999999887543
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-69 Score=577.02 Aligned_cols=375 Identities=39% Similarity=0.643 Sum_probs=348.4
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccC------CCCCCCCChhhhccCCHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS------FSTDGWVAPKLSKRMDKFML 237 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~------fd~~~~i~p~~~~~md~~~r 237 (557)
+++|+|||||+++|.|.++++||++|.+|+++|+++++|+...++.++.+++++ ||+.+|++++++++|||+++
T Consensus 20 ~~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~ 99 (438)
T 2iwz_A 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI 99 (438)
T ss_dssp ECCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence 357999999999999999999999999999999999999888888888888877 99998999999999999999
Q ss_pred HHHHHHHHHHHHCCCCh-hhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhC
Q 008700 238 YLLTAGKKALADGGITE-DVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 238 l~l~aa~eALedAGl~~-~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
|+++++++||+|||+++ ++ +++.++|||+|+..+++....+++..+ ..+...++|+.++....++++.+|++.||
T Consensus 100 l~l~aa~~AL~dAGl~~~~~---i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lg 176 (438)
T 2iwz_A 100 MAIGAAELAMKDSGWHPQSE---ADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYK 176 (438)
T ss_dssp HHHHHHHHHHHHHTCCCCSH---HHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCccc---ccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhC
Confidence 99999999999999986 53 345789999999998887777666655 45567789998888889999999999999
Q ss_pred CCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCcee
Q 008700 316 WMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (557)
Q Consensus 316 l~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~ 395 (557)
++||+++|+++|+|++.||+.|+++|++|+||+|||||+|.+++|..+..|..++.++.. .+|++.|+|||.+++|+++
T Consensus 177 l~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~-~~p~~~~~pfd~~~~G~~~ 255 (438)
T 2iwz_A 177 LKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTN-SDPKLACRPFHPKRDGFVM 255 (438)
T ss_dssp CCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-SCTTTSCCTTCTTCCSBCB
T ss_pred CCCceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCC-CCCCcccccCCCCCCCEEe
Confidence 999999999999999999999999999999999999999998889888889999888753 3478899999999999999
Q ss_pred cCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCc
Q 008700 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGD 475 (557)
Q Consensus 396 gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D 475 (557)
||||+++||+++++|+++|++||++|+|++.++|+++.+.|.+++.++.++|+++|+++|++++||||||+|+|||+++|
T Consensus 256 geGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~gD 335 (438)
T 2iwz_A 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGD 335 (438)
T ss_dssp BCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHH
T ss_pred eceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCCCCcccC
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 476 IKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 476 ~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
++|.++|.++|+.. .+++|+++|+++||+++|+|++++++++++|+++++||++|+++|+|.++++.
T Consensus 336 ~~E~~al~~~fg~~~~~~~v~s~K~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~~ 403 (438)
T 2iwz_A 336 AAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNY 403 (438)
T ss_dssp HHHHHHHHHHHGGGGGTSEEECCHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSCCCTTCCSBC
T ss_pred HHHHHHHHHHHhccCCCcceecchhhhcCCHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCccc
Confidence 99999999999853 46899999999999999999999999999999999999999999999998874
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=571.54 Aligned_cols=378 Identities=43% Similarity=0.702 Sum_probs=352.3
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCcccccccc-------CCCCCCCCChhhhccCCHH
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------SFSTDGWVAPKLSKRMDKF 235 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~-------~fd~~~~i~p~~~~~md~~ 235 (557)
.+++|||||||+++|.|.++++||++|++|+++|+++++|+...++....+.++ +||+.+||++++++.|||+
T Consensus 8 ~~~~~viTG~G~vsp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 87 (428)
T 3kzu_A 8 HMRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDPF 87 (428)
T ss_dssp -CCCEEEEEEEEECSSCBSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCBSSSSTTCBCGGGTSCHHHHTTSCHH
T ss_pred cccceEEEeceEECCCcCCHHHHHHHHHcCCCeeeeCCccccccCcCceeeEecccccccccCChhhcCCHHHHHhCCHH
Confidence 467899999999999999999999999999999999999999888888888877 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
++|+++++++||+|||+++++ .++..++|||+|++.+++....+++..+ ..+...++|+.++....+..+++|++.|
T Consensus 88 ~~l~l~aa~~AL~dAGl~~~~--~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~l 165 (428)
T 3kzu_A 88 IVYAVGAADQALDDAGWHPEN--DEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKH 165 (428)
T ss_dssp HHHHHHHHHHHHHHHTCCCCS--HHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCChhh--hccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHHHc
Confidence 999999999999999999863 0446789999999999888777776665 4566788999999999999999999999
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCCCCCc
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~~dG~ 393 (557)
|++||+++|+++|+|++.||+.|+++|++|+||++||||+|.++++..+..|...+.++.. ..+|+..|+|||.+++|+
T Consensus 166 gl~Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~G~ 245 (428)
T 3kzu_A 166 KLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGF 245 (428)
T ss_dssp TCCSCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBTTCCSB
T ss_pred CCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCcccCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999865 456778999999999999
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCcc
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPA 473 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~ 473 (557)
++||||+++||+++++|+++|++||++|+|++.++|+++.+.|.+++.++.++++++|+++|++++||||||+||||| .
T Consensus 246 v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT-~ 324 (428)
T 3kzu_A 246 VMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST-M 324 (428)
T ss_dssp CBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSS-T
T ss_pred eecCceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHeeEEEecCCcc-h
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q 008700 474 GDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSG 543 (557)
Q Consensus 474 ~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~ 543 (557)
+|..|.+++.++|+.. .++++++.|+++||++||+|++++++++++|+++++||++|+++|+|.++++.-
T Consensus 325 ~d~~e~~al~~~~g~~~~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~~ 395 (428)
T 3kzu_A 325 ADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLV 395 (428)
T ss_dssp THHHHHHHHHHHHGGGGGGCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBSSCCSSBCC
T ss_pred hhHHHHHHHHHHhccCCCceeeCCchhhhCCCchhhHHHHHHHHHHHhccCccCCCCCCCCCCCCCCcccC
Confidence 9999999999999864 468999999999999999999999999999999999999999999999988743
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-69 Score=576.24 Aligned_cols=375 Identities=34% Similarity=0.517 Sum_probs=344.5
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCC-CChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW-VAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~-i~p~~~~~md~~~rl~l~aa 243 (557)
++|+|||||+++|+|.++++||++|.+|+++++++++|+...++..+.+++ +||..+| |+++++++|||+++|+++++
T Consensus 3 ~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~-~fd~~~~~i~~~~~~~~d~~~~l~l~aa 81 (424)
T 1tqy_A 3 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEA-DFDPVAEGFGPRELDRMDRASQFAVACA 81 (424)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCHHHHTCCHHHHHHSCHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCceeeCCCcccccCCcceeEEe-ccCHhhcCCCHHHHHhcCHHHHHHHHHH
Confidence 479999999999999999999999999999999999999888888888888 8998888 99999999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHH---hhhccCCCccccccccchhHH----HHHHhhCC
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALR---ISYKKMNPFCVPFATTNMGSA----MLAMDLGW 316 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~---~~~~~~~p~~~~~~~~n~~a~----~ia~~lgl 316 (557)
++||+|||++++ ++++.|+|||+|+..+++...++++..+. .+....+++.++....+..+. +|++.||+
T Consensus 82 ~~AL~dAG~~~~---~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lgl 158 (424)
T 1tqy_A 82 REAFAASGLDPD---TLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGA 158 (424)
T ss_dssp HHHHHHHTCCTT---TCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTC
T ss_pred HHHHHHCCCCch---hcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcCC
Confidence 999999999986 45678999999999988877766666553 334456666666665555555 99999999
Q ss_pred CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceec
Q 008700 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (557)
Q Consensus 317 ~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~g 396 (557)
+||+++|+++|+|++.||+.|+++|++|+||++||||+|.++++..+..|..++.++..+.+|++.|+|||.+++|+++|
T Consensus 159 ~gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~g 238 (424)
T 1tqy_A 159 EGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLA 238 (424)
T ss_dssp CSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCCCTTBTTCCCBCEE
T ss_pred CCceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCccCCCCCCCceeee
Confidence 99999999999999999999999999999999999999998899988999999999876677889999999999999999
Q ss_pred CceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcH
Q 008700 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDI 476 (557)
Q Consensus 397 EGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~ 476 (557)
||++++||+++++|+++|++||++|+|++.++|+++.+.|.|++.++.++|+++|+++|++++||||||+|+|||+++|+
T Consensus 239 eGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~gD~ 318 (424)
T 1tqy_A 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDR 318 (424)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHH
T ss_pred cceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCccCcCcCH
Confidence 99999999999999999999999999999999999998898999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q 008700 477 KEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSG 543 (557)
Q Consensus 477 ~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~ 543 (557)
+|.++|.++|+.. .+++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++++.-
T Consensus 319 ~E~~al~~~f~~~~~~~~v~s~k~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~p~~~~~~v 386 (424)
T 1tqy_A 319 HETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYV 386 (424)
T ss_dssp HHHHHHHHHTGGGGGGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCSBBTTBCSCCC
T ss_pred HHHHHHHHHhcccCCCCeeeccccccccChhhhHHHHHHHHHHHHHcCCcCCCCCCCCCCCCCCcccC
Confidence 9999999999854 358899999999999999999999999999999999999999999999988743
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-68 Score=569.17 Aligned_cols=369 Identities=26% Similarity=0.421 Sum_probs=344.4
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
.++|+|||||+++|.|.+.++||++|.+|+++++++++|+...++.++.+++++||.++|+++++.++|||+++|+++++
T Consensus 8 ~~~v~I~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~aa 87 (415)
T 1tqy_B 8 DKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAA 87 (415)
T ss_dssp --CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHH
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHHH
Confidence 46799999999999999999999999999999999999988888888899999999988899999999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~t 322 (557)
++||+|||++++ +++..++|||+|+..+++...++++..+ ..+...++|+.++....+.++.++++.||++||+++
T Consensus 88 ~~AL~dAGl~~~---~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~gp~~~ 164 (415)
T 1tqy_B 88 DWALQDAKADPE---SLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSA 164 (415)
T ss_dssp HHHHHHTTCCGG---GSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHcCCCcc---ccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCCCCceEe
Confidence 999999999986 4557899999999999988777777665 455677899999999999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+++|+|++.||+.|+++|++| ||++||||+|.++++..+..|..++.|+. +.+|++.|+|||.+++|+++|||++++
T Consensus 165 v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~-~~~~~~~~~pfd~~~~G~~~geGaaav 242 (415)
T 1tqy_B 165 LVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGGAIL 242 (415)
T ss_dssp EECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC-CSCGGGSCCTTSTTCCCBCBBCEEEEE
T ss_pred ecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccC-CCCCCCCcCCCCCCCCCcceeeeEEEE
Confidence 9999999999999999999999 99999999999999999999999998885 445778999999999999999999999
Q ss_pred EEcchHHHHhcCC-eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHH
Q 008700 403 LLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQA 481 (557)
Q Consensus 403 vLe~~~~A~~~G~-~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~A 481 (557)
||+++++|+++|+ +||++|+|++.++|+++.+.|.+ ++.++|+++|+++|++++||||||+|||||+++|.+|..+
T Consensus 243 vL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~~---~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D~~E~~a 319 (415)
T 1tqy_B 243 VLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARA 319 (415)
T ss_dssp EEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCCC---SHHHHHHHHHHHHTCCGGGCCEEECCCCCSHHHHHHHHHH
T ss_pred EECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCCH---HHHHHHHHHHHHcCCCHhHCCEEEEeCCCCcCcCHHHHHH
Confidence 9999999999999 99999999999999998777765 7889999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 482 LIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 482 l~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
+.++|+.. .++|++.|+++||++||+|++++++++++|+++++||++|+++|+|.++++
T Consensus 320 l~~~~g~~-~~~v~s~K~~~GH~~gAaG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~~~ 378 (415)
T 1tqy_B 320 IGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGID 378 (415)
T ss_dssp HHHHHCTT-CSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCCCCGGGCCE
T ss_pred HHHHhCCC-CceEeccchhhccChHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Confidence 99999865 489999999999999999999999999999999999999999999998875
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-68 Score=569.57 Aligned_cols=366 Identities=37% Similarity=0.609 Sum_probs=337.0
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|+|||||+++|.|.+.++||++|.+|+++++++++|+...++.++.++++ ||+.+||++++.++|||+++|++++++
T Consensus 2 ~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~-fd~~~~~~~~~~~~~d~~~~l~l~aa~ 80 (406)
T 2vba_A 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLIDRKVVRFMSDASIYAFLSME 80 (406)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCC-CCCTTSSCHHHHTTCCHHHHHHHHHHH
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCccceEEEec-CChhhcCCHHHHHhcCHHHHHHHHHHH
Confidence 5799999999999999999999999999999999998887778888888998 999999999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccC-CceEEEEeccCCchhhHHHHHHHHH--hhhccCCCccccccccchhHHHHHHhhCCCCCee
Q 008700 245 KALADGGITEDVMNELDK-SKCGVLIGSGLGGMKVFYDAIEALR--ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~-~r~gV~vG~~~g~~~~~~~~~~~l~--~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~ 321 (557)
+||+|||++++ +++. .|+|||+|+..+++....+++..+. .+...++|+.++....+.++.++++.||++||++
T Consensus 81 ~Al~dAg~~~~---~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp~~ 157 (406)
T 2vba_A 81 QAIADAGLSPE---AYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNY 157 (406)
T ss_dssp HHHHHHTCCHH---HHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCEE
T ss_pred HHHHHCCCChh---HcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccCCCcee
Confidence 99999999976 4456 8999999999998877777666553 4455678888888889999999999999999999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhc-cCCCCCCCCCCCcCCCCCceecCceE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ-RNNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~-~~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
+|+++|+|++.||+.|+++|++|+||++||||+|.++++..+. |..++.++. .+++|++.|+|||.+++|+++|||++
T Consensus 158 ~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~~~~pfd~~~~G~v~gEGaa 236 (406)
T 2vba_A 158 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236 (406)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred eeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCccccCcCcCCCCceEeeceEE
Confidence 9999999999999999999999999999999999988887777 888888875 34457889999999999999999999
Q ss_pred EEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHH
Q 008700 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQ 480 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~ 480 (557)
++|||++++|+++|++||++|+|++.++|+++++.| ++.++.++|+++|+++| +||||||+|||||+.+|++|.+
T Consensus 237 avvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p--~~~~~~~ai~~al~~ag---~dId~ve~HgtgT~~gD~~E~~ 311 (406)
T 2vba_A 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGVD---TPIDYLNSHGTSTPVGDVKELA 311 (406)
T ss_dssp EEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSC--CSHHHHHHHHHHHTTCC---SCCCEEECCCCSCHHHHHHHHH
T ss_pred EEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHhhCC---CCccEEEeeCccCcccCHHHHH
Confidence 999999999999999999999999999999877654 48899999999999999 8999999999999999999999
Q ss_pred HHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC-CC
Q 008700 481 ALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA-ID 541 (557)
Q Consensus 481 Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~-~~ 541 (557)
+|.++|+... ++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++ ++
T Consensus 312 al~~~fg~~~-~~v~s~K~~~GH~~gAaG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~~~ 372 (406)
T 2vba_A 312 AIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLN 372 (406)
T ss_dssp HHHHHHTTCC-CEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCTTSE
T ss_pred HHHHHhCcCC-CceeCchhhhcccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCccccc
Confidence 9999998653 789999999999999999999999999999999999999999999987 44
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-68 Score=569.28 Aligned_cols=375 Identities=44% Similarity=0.702 Sum_probs=350.3
Q ss_pred CCCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHH
Q 008700 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (557)
Q Consensus 161 ~~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l 240 (557)
-|++++|+|||||+++|.|.++++||++|.+|+++++++++|+...++.++.+++++||.+++++++++++|||+++|++
T Consensus 19 ~m~m~~v~ItG~g~~~P~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l 98 (430)
T 1ox0_A 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYAL 98 (430)
T ss_dssp SCCCCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHHHHHH
T ss_pred cccCCCEEEEEEEEECCCcCCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHHHHHH
Confidence 46678999999999999999999999999999999999999998888888999999999888899999999999999999
Q ss_pred HHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCC
Q 008700 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (557)
Q Consensus 241 ~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp 319 (557)
+++++||+|||++++ +++..++|||+|+..+++....+++..+ ..+...++|+.++..+.+..+.+|++.||++||
T Consensus 99 ~aa~~AL~dAG~~~~---~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~Gp 175 (430)
T 1ox0_A 99 YAAQEAVNHANLDVE---ALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGV 175 (430)
T ss_dssp HHHHHHHHHTTCCTT---TSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHcCCChh---hcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhcCCCc
Confidence 999999999999876 4567899999999988877666665554 456678899999999999999999999999999
Q ss_pred eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCce
Q 008700 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399 (557)
Q Consensus 320 ~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGA 399 (557)
+++|+++|+|++.||+.|+++|++|+||++||||+|.+++|..+..|..++.++. ..+|++.|+|||.+++|+++||||
T Consensus 176 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~-~~~p~~~~~pFd~~~~g~~~geGA 254 (430)
T 1ox0_A 176 CKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGS 254 (430)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC-CSSTTSSSCTTBTTCCSBCBCCEE
T ss_pred eEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccC-CCCCCCCCCCCCCCCCCccccceE
Confidence 9999999999999999999999999999999999999889988888988888874 345788999999999999999999
Q ss_pred EEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHH
Q 008700 400 GVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEY 479 (557)
Q Consensus 400 aalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~ 479 (557)
+++||+++++|+++|++||++|+|++.++|+++.+.|.+++.++.++|+++|+++|++++||||||+|+|||+.+|+.|.
T Consensus 255 aavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D~~E~ 334 (430)
T 1ox0_A 255 GMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGES 334 (430)
T ss_dssp EEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHHHHHH
T ss_pred EEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHhCcCHHHcCEEEEeCCcCcccCHHHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 480 QALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 480 ~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
.++.++|+. +++|++.|+++||+++|+|++++++++++|+++++||++|+++|||.|+++
T Consensus 335 ~al~~~~g~--~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~ 394 (430)
T 1ox0_A 335 GAIVAVLGK--EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEAN 394 (430)
T ss_dssp HHHHHHHCS--SSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSE
T ss_pred HHHHHHhCC--CceecccccccccchhhHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcc
Confidence 999999987 589999999999999999999999999999999999999999999999875
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-68 Score=567.75 Aligned_cols=370 Identities=39% Similarity=0.564 Sum_probs=336.6
Q ss_pred CCCCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHH
Q 008700 160 PHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (557)
Q Consensus 160 ~~~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~ 239 (557)
.++.+++|+|||||+++|.|.+.++||++|++|+++++++++|+...++..+.++ .+||..+||++++++.||++++|+
T Consensus 18 ~~~~m~~V~ItG~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~g~-~~fd~~~~i~~~~~~~~d~~~~l~ 96 (428)
T 3mqd_A 18 GPGSMRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLVDRRAMRFHGRGTAWN 96 (428)
T ss_dssp ----CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEEC-CCCCHHHHSCTGGGTTCCHHHHHH
T ss_pred CCCCCCCEEEEeeEEECCCcCCHHHHHHHHHcCCCcceeCCcccccCCCcccccc-cCCChhhcCCHHHHhhCCHHHHHH
Confidence 3556789999999999999999999999999999999999988877888877777 579998889999999999999999
Q ss_pred HHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCC
Q 008700 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (557)
Q Consensus 240 l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G 318 (557)
++++++||+|||++++ +++..++|||+|+..+++....++...+ ..+...++|+.++....++++.++++.||++|
T Consensus 97 ~~aa~~Al~dAGl~~~---~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~g 173 (428)
T 3mqd_A 97 HIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKG 173 (428)
T ss_dssp HHHHHHHHHHHTCCHH---HHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCChh---HccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCCCC
Confidence 9999999999999987 4557899999999988877666666655 45677889999999999999999999999999
Q ss_pred CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCCCCCceecC
Q 008700 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGE 397 (557)
Q Consensus 319 p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~~dG~v~gE 397 (557)
|+++|+++|+||++||++|+++|++|+||++||||+|.+ ++.....|..++.++.. ..+|++.|+|||.+++|+++||
T Consensus 174 p~~tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~~-s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~gE 252 (428)
T 3mqd_A 174 INYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDL-DWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAG 252 (428)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECC-CHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBBC
T ss_pred ceeeecCccHHHHHHHHHHHHHHHcCCCCEEEEEeeccc-chHHHHHHHHhhhhcccccCCcccccCcccCCCCCccccc
Confidence 999999999999999999999999999999999999995 45555568888888755 4568899999999999999999
Q ss_pred ceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHH
Q 008700 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIK 477 (557)
Q Consensus 398 GAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~ 477 (557)
||+++||+++++|+++|++||++|+|++.++|+++.+.| ++.++.++|+++|+ |++ +||||||+|||||+++|++
T Consensus 253 GAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P--~~~~~~~ai~~Al~--gl~-~dId~ve~HgtgT~~~D~~ 327 (428)
T 3mqd_A 253 GAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS--TVT-SKIDYINPHATSTPAGDAP 327 (428)
T ss_dssp EEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC--CSHHHHHHHHHHHT--TCC-SCCCEEECCCCSCHHHHHH
T ss_pred ceEEEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHh--CCc-cccCEEEEeCCCCCCcCHH
Confidence 999999999999999999999999999999999987655 78899999999999 999 9999999999999999999
Q ss_pred HHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 008700 478 EYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539 (557)
Q Consensus 478 E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~ 539 (557)
|.++|.++|+.. ..++|++.|+++||++||||++++++++++|+++++||++|+++|||.++
T Consensus 328 E~~al~~~~~~~~~~~~v~s~K~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~ 390 (428)
T 3mqd_A 328 EIEAIRQIFGAGDVCPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFA 390 (428)
T ss_dssp HHHHHHHHHCSGGGSCCBCCTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGGGT
T ss_pred HHHHHHHHhcccCCCceeecchhhhcccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCcccc
Confidence 999999999842 24789999999999999999999999999999999999999999999885
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-67 Score=562.84 Aligned_cols=372 Identities=33% Similarity=0.512 Sum_probs=345.3
Q ss_pred CCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCC--CCCCCccccccccCCCCCCCCChhhhccCCHHHHHHH
Q 008700 163 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLL 240 (557)
Q Consensus 163 ~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~--~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l 240 (557)
.+++|+|||||+++|.|.++++||++|++|+++++++++|+ ...++.++.+++++ |+.+||+++++++|||+++|++
T Consensus 26 ~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~-d~~~~~~~~~~~~~d~~~~l~l 104 (434)
T 2gp6_A 26 AFPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLE-EFDHQLTRIELRRMGYLQRMST 104 (434)
T ss_dssp TSCCEEEEEEEEECSSCSSHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSC-CSTTSSCHHHHHTCCHHHHHHH
T ss_pred CCCCEEEEeeEEeCCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCC-chhhhCCHHHHHhCCHHHHHHH
Confidence 45689999999999999999999999999999999999887 55677788888887 7777899999999999999999
Q ss_pred HHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCC
Q 008700 241 TAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGP 319 (557)
Q Consensus 241 ~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp 319 (557)
+++++||+|||++ ++++.++|||+|+..+++....+++..+ ..+...++|+.++....+..+.+|++.||++||
T Consensus 105 ~aa~~ALedAG~~-----~~~~~~igv~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl~Gp 179 (434)
T 2gp6_A 105 VLSRRLWENAGSP-----EVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAKAG 179 (434)
T ss_dssp HHHHHHHHHTTCC-----CCCTTSEEEEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCCCSC
T ss_pred HHHHHHHHhcCCC-----ccCCCceEEEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcCCCC
Confidence 9999999999993 4568899999999998887776666655 344566788888888999999999999999999
Q ss_pred eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhh-hhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 320 NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 320 ~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~-~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
+++|+++|+|++.||+.|+++|++|+||++||||+|.+..+..+..|..++ .++..+..|++.|+|||.+++|+++|||
T Consensus 180 ~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~~g~v~gdG 259 (434)
T 2gp6_A 180 VMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDRDRDGFVFGEG 259 (434)
T ss_dssp EECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTTSCCSSBTTCCCCCBBCC
T ss_pred eEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCCceecccccCCCcceecc
Confidence 999999999999999999999999999999999999999998888999988 7776666788999999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHH
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKE 478 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E 478 (557)
++++||+++++|+++|++||++|+|++.++|+++.+.|.+++.++.++|+++|+++|++++||||||+|+|+|+.+|.+|
T Consensus 260 AaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D~~E 339 (434)
T 2gp6_A 260 GALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAE 339 (434)
T ss_dssp EEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHTTCCTTTEEEEECCCCSCHHHHHHH
T ss_pred eEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCccchHHH
Confidence 99999999999999999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 479 YQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 479 ~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
.++|.++|+.. ++++++.|+++||+++|+|++++++++++|+++++||++|+++|||.|+++
T Consensus 340 ~~al~~~fg~~-~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~ 401 (434)
T 2gp6_A 340 GRAINNALGGN-RPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLD 401 (434)
T ss_dssp HHHHHHHHTTC-CCEECCTHHHHCBCTTTHHHHHHHHHHHHHHHSCCCCCSSCSSBCTTCCCE
T ss_pred HHHHHHHhccC-CCCcccchhhhcCchhhhHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcc
Confidence 99999999865 689999999999999999999999999999999999999999999999876
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-67 Score=562.69 Aligned_cols=372 Identities=33% Similarity=0.535 Sum_probs=345.0
Q ss_pred CCCCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCC--CCCCCccccccccCCCCCCCCChhhhccCCHHHHHH
Q 008700 162 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--CTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (557)
Q Consensus 162 ~~~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~--~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~ 239 (557)
..+++|+|||||+++|+|.++++||++|++|+++++++++|+ ...++.++.+++++ |+.+||+++++++|||+++|+
T Consensus 9 ~~~~~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~d~~~~l~ 87 (416)
T 2wge_A 9 GGFPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMGRLDMRRMSYVQRMG 87 (416)
T ss_dssp TSSCCEEEEEEEEEESSCSSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSS-CGGGGCCHHHHHHSCHHHHHH
T ss_pred CCCCcEEEEeeEEECCCCCCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCC-chhhhCCHHHHHhcCHHHHHH
Confidence 345689999999999999999999999999999999999887 45677888889987 777889999999999999999
Q ss_pred HHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCC
Q 008700 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (557)
Q Consensus 240 l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G 318 (557)
++++++||+|||++ +++.+++|||+|+..+++...++++..+ ..+...++|+.++....+..+.+|++.||++|
T Consensus 88 l~aa~~AL~dAG~~-----~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~g 162 (416)
T 2wge_A 88 KLLGGQLWESAGSP-----EVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGARA 162 (416)
T ss_dssp HHHHHHHHHHTTCC-----CCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHcCCC-----ccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhccCC
Confidence 99999999999992 5667899999999998887777766655 45667789998888999999999999999999
Q ss_pred CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 319 p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
|+++|+++|+|++.||+.|+++|++|++|++||||+|.+..+..+..|...+.++..+.+|+..|+|||.+++|+++|||
T Consensus 163 p~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~dg~v~geG 242 (416)
T 2wge_A 163 GVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEA 242 (416)
T ss_dssp CEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTCCCBCBBCE
T ss_pred CcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCCCCccccCc
Confidence 99999999999999999999999999999999999999999888889999999987777788999999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHH
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKE 478 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E 478 (557)
++++||+++++|+++|++||++|+|++.++|+++.+.|.+.+.++.++|+++|+++|++++||||||+|||||+.+|++|
T Consensus 243 aaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~HgtgT~~gD~~E 322 (416)
T 2wge_A 243 GALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAE 322 (416)
T ss_dssp EEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHHHH
T ss_pred eEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEECCCCCcCCCHHH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 479 YQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 479 ~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
..++..+ +.. ++++++.|+++||++||+|++++++++++|+++++||++|+++|||.|+++
T Consensus 323 ~~al~~~-~~~-~~~v~s~k~~~GH~~gAsG~~~~i~~~l~l~~~~ipp~~~~~~~~p~~~~~ 383 (416)
T 2wge_A 323 ANAIRVA-GCD-QAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLD 383 (416)
T ss_dssp HHHHHHT-TCT-TSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTTCCE
T ss_pred HHHHHHh-ccC-CCCccCCcccccCcHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcc
Confidence 9999988 543 589999999999999999999999999999999999999999999999876
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-67 Score=566.23 Aligned_cols=376 Identities=39% Similarity=0.648 Sum_probs=350.7
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCcccccccc--------CCCCCCCCChhhhccCCHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK--------SFSTDGWVAPKLSKRMDKF 235 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~--------~fd~~~~i~p~~~~~md~~ 235 (557)
+++|+|||||+++|.|.++++||++|.+|+++++++++|+...++.++.++++ +||+.+||++++++.|||+
T Consensus 23 ~~~v~ItG~g~~~P~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~g~v~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 102 (451)
T 4ddo_A 23 TLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRF 102 (451)
T ss_dssp -CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCHHHHTTSSCCEEECCCCTTTCTTTCCCGGGTSCHHHHTTSCHH
T ss_pred CCCEEEEEeEEECCCCCCHHHHHHHHHcCCCeeeeCCccccccccCccceEccccccccccccchhhhCCHHHHhhCCHH
Confidence 36899999999999999999999999999999999999888888888888887 7999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
++|+++++++||+|||++++++. +..++||++|+..+++...++++..+ ..+...++|+.++....++.+.+|++.|
T Consensus 103 ~~L~l~Aa~~AL~dAGl~~~~i~--d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l 180 (451)
T 4ddo_A 103 IQMAMVAADEALAEAGWAPEAEQ--QRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKH 180 (451)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSHH--HHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChhhcc--cccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHHHHHh
Confidence 99999999999999999987440 46899999999999988877777766 4556778999999999999999999999
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCCCCCc
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~~dG~ 393 (557)
|++||+++|+++|+|++.||+.|+++|++|+||+|||||+|.+.++..+..|...+.++.. ..+|.+.|+|||.+++|+
T Consensus 181 gl~Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~g~ 260 (451)
T 4ddo_A 181 RFRGPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGF 260 (451)
T ss_dssp TCCSCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSB
T ss_pred cCCCceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhccCCCcCccccccccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999998865 456778999999999999
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCcc
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPA 473 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~ 473 (557)
++||||+++||+++++|+++|++||++|+|++.++|+.+.+.+.+++.++.++++++|+++|++++||||||+|+|||++
T Consensus 261 v~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~ 340 (451)
T 4ddo_A 261 VMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPV 340 (451)
T ss_dssp CBBCEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHH
T ss_pred EEeceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCCcCcc
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC-CCC
Q 008700 474 GDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVV-AID 541 (557)
Q Consensus 474 ~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~-~~~ 541 (557)
+|++|.+++.++|+...+++|+++|+++||++||+|++++++++++|+++++||++|+++|||.+ +++
T Consensus 341 ~d~~E~~al~~~~~~~~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~ 409 (451)
T 4ddo_A 341 GDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLD 409 (451)
T ss_dssp HHHHHHHHHHHHHCSSSSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGGGTTSE
T ss_pred cCHHHHHHHHHHhCCCCCCcccCchhhhccCHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCccccccc
Confidence 99999999999998765789999999999999999999999999999999999999999999988 554
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-67 Score=605.44 Aligned_cols=367 Identities=25% Similarity=0.399 Sum_probs=329.7
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccC-CCCCCC-Cccccc---cccCCCCCCC-CChhhhccCCHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIET-FDCTSF-PTKIAA---EIKSFSTDGW-VAPKLSKRMDKFML 237 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~-~~~~~~-~~~~~g---~i~~fd~~~~-i~p~~~~~md~~~r 237 (557)
+++|+||||||++|+|.++++||++|.+|+++++++++ |+...+ .....+ .++.||..+| |+|+|++.|||+|+
T Consensus 3 ~~~IaIvGmg~r~P~~~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~r 82 (965)
T 3hhd_A 3 GEEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQLR 82 (965)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHHH
T ss_pred CCCEEEEeeeEECCCCCCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHHH
Confidence 47899999999999999999999999999999998754 332211 112233 3456999999 99999999999999
Q ss_pred HHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC
Q 008700 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (557)
Q Consensus 238 l~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~ 317 (557)
|+++++++||+|||++++ ++++.++|||+|+..+++ ...+......+.++.+++...++++++|++.|||+
T Consensus 83 L~leaa~eALedAGi~~~---~i~~~~~Gv~vG~~~~d~------~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~ 153 (965)
T 3hhd_A 83 LLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSGSET------SEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFR 153 (965)
T ss_dssp HHHHHHHHHHHHTTCCGG---GGTTSCCEEEEEECCCHH------HHHHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCChH---HcCCceeEEEEeccchhH------HHHHhcCccccCcccccccccchHHHHHHHHhCCC
Confidence 999999999999999987 566899999999876543 23333455667778888888999999999999999
Q ss_pred CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecC
Q 008700 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (557)
Q Consensus 318 Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gE 397 (557)
||+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+..|...+.|+ |++.|+|||.+++||++||
T Consensus 154 GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls-----~~g~~~~Fd~~adG~~~gE 228 (965)
T 3hhd_A 154 GPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSE 228 (965)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBC-----TTCCCCTTBTTCCSBCBBC
T ss_pred CCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcC-----CCCccccchhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred ceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcH
Q 008700 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH-MTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDI 476 (557)
Q Consensus 398 GAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~-~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~ 476 (557)
|+|++|||++++|+ +||++|+|+++++|+.+ ...+.|++.++.++|+++|+++|++|+||||||+|||||+.||+
T Consensus 229 GagavvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P~~~~q~~~i~~Al~~Agl~p~dIdyvEaHgTgT~~gD~ 304 (965)
T 3hhd_A 229 GVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDP 304 (965)
T ss_dssp EEEEEEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSCCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCTTHHH
T ss_pred eEEEEEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHhccccccCCCCCCCCH
Confidence 99999999999985 49999999999999976 55677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC-CCCCccccC
Q 008700 477 KEYQALIHCFGQN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA-IDSGHECAC 548 (557)
Q Consensus 477 ~E~~Al~~~~~~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~-~~~~~~~~~ 548 (557)
+|.++|.++|+.. .+++|+++|+||||+++|||++++++++++|+|++||||+|+++|||.|+ +.+.++.++
T Consensus 305 ~E~~Al~~~f~~~~~~~~~vgs~Ks~iGH~~~AaG~~~lik~~l~l~~~~ipp~~~~~~~np~i~~~~~~~~~v~ 379 (965)
T 3hhd_A 305 QELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVV 379 (965)
T ss_dssp HHHHHHHHHHCSSCSSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCCSBCTTCHHHHHTSEEEC
T ss_pred HHHHHHHHHhcccCCCceeeeccccccccchhhhhHHHHHHHHHHHhcCCcCCccCCCCCCccCcccccCceeec
Confidence 9999999999853 46899999999999999999999999999999999999999999999998 667777666
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-67 Score=559.70 Aligned_cols=371 Identities=41% Similarity=0.692 Sum_probs=338.0
Q ss_pred cEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCC--------------CCCCcccccccc------CCCCCCCCC
Q 008700 166 RVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC--------------TSFPTKIAAEIK------SFSTDGWVA 225 (557)
Q Consensus 166 ~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~--------------~~~~~~~~g~i~------~fd~~~~i~ 225 (557)
+|+|||||+++|.|.++++||++|++|+++++++++|+. ..++.+++++++ +||+.+|++
T Consensus 2 ~vaI~G~g~~~p~g~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~fd~~~~~~ 81 (431)
T 2ix4_A 2 RVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWLN 81 (431)
T ss_dssp CEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHSC
T ss_pred cEEEEeeeEECCCCCCHHHHHHHHHcCCCeeeeCChhhhhccccccccccccccCcccceeEEeccccccccCChhhcCC
Confidence 699999999999999999999999999999999988873 245666777777 788877787
Q ss_pred hhhhccCCHHHHHHHHHHHHHHHHCCC-ChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCcccccccc
Q 008700 226 PKLSKRMDKFMLYLLTAGKKALADGGI-TEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATT 303 (557)
Q Consensus 226 p~~~~~md~~~rl~l~aa~eALedAGl-~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~ 303 (557)
++ +|||+++|+++++++||+|||+ ++++ ++..++|||+|+..+++....+++..+ ..+...++|+.++....
T Consensus 82 ~~---~~d~~~~l~l~aa~~AL~dAG~~~~~~---i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 155 (431)
T 2ix4_A 82 SK---AVANFIGYAVCAADEALRDAEWLPTEE---EEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILV 155 (431)
T ss_dssp ST---TCCHHHHHHHHHHHHHHHHTTCCCCSH---HHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCT
T ss_pred hh---hCCHHHHHHHHHHHHHHHHcCCCCccc---cCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcchh
Confidence 76 8999999999999999999999 8763 446799999999988877766666555 34456788888888889
Q ss_pred chhHHHHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCC
Q 008700 304 NMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKA 382 (557)
Q Consensus 304 n~~a~~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~ 382 (557)
++.+.+|++.||++||+++|+++|+|++.||+.|+++|++|+||++||||+|.++++..+..|..++.++.. +.+|++.
T Consensus 156 ~~~a~~ia~~lgl~gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~ 235 (431)
T 2ix4_A 156 NMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEA 235 (431)
T ss_dssp THHHHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGS
T ss_pred HHHHHHHHHHHCCCCceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999888889988888754 4457889
Q ss_pred CCCCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 008700 383 SRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462 (557)
Q Consensus 383 ~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId 462 (557)
|+|||.+++|+++||||+++||+++++|+++|++||++|+|++.++|+++++.|.+++.++.++|+++|+++|++++|||
T Consensus 236 ~~pfd~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId 315 (431)
T 2ix4_A 236 SRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQID 315 (431)
T ss_dssp CCTTBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCC
T ss_pred cccCCCCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred EEEEcCCCCccCcHHHHHHHHHHhcCC---CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 008700 463 YINAHATSTPAGDIKEYQALIHCFGQN---RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539 (557)
Q Consensus 463 ~ve~hgtgt~~~D~~E~~Al~~~~~~~---~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~ 539 (557)
|||+|||||+++|++|.+++.++|+.. .+++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++
T Consensus 316 ~ve~HgtgT~~~D~~E~~al~~~~~~~~~~~~~~v~s~k~~~GH~~gAsG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~ 395 (431)
T 2ix4_A 316 YVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFD 395 (431)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHHTHHHHTSCSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCC
T ss_pred EEEEeCCcCcccCHHHHHHHHHHHcccccCCCceeecchhhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCC
Confidence 999999999999999999999999742 36899999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 008700 540 IDS 542 (557)
Q Consensus 540 ~~~ 542 (557)
++.
T Consensus 396 ~~~ 398 (431)
T 2ix4_A 396 KRF 398 (431)
T ss_dssp SSS
T ss_pred ccc
Confidence 763
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-67 Score=608.18 Aligned_cols=372 Identities=26% Similarity=0.387 Sum_probs=331.4
Q ss_pred CCcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCC-C-CCCCcccccccc---CCCCCCC-CChhhhccCCHHH
Q 008700 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFD-C-TSFPTKIAAEIK---SFSTDGW-VAPKLSKRMDKFM 236 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~-~-~~~~~~~~g~i~---~fd~~~~-i~p~~~~~md~~~ 236 (557)
.++|+||||||++|+| .++++||++|.+|++++++++..+ + .....+.+++++ .||..+| |+|++++.|||++
T Consensus 38 ~~~iaIvG~~~~~Pgg~~~~~~~w~~L~~g~~~i~~~p~~r~~~~~~~~~~~~~l~~~~~fD~~~f~i~~~ea~~mdp~~ 117 (917)
T 2hg4_A 38 GEPIAIVGMACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEPDPDARLGGMLAAAGDFDAGFFGISPREALAMDPQQ 117 (917)
T ss_dssp HCCEEEEEEEEEBTTTBCSHHHHHHHHHTTCCCCEECCGGGCCCCCSSCCEEBCCTTTTEECTGGGTCCHHHHHHSCHHH
T ss_pred CCCEEEEeceEECCCCCCCHHHHHHHHHcCCCccccCCcccccCCCCCcceeeEecCccccChhhcCCCHHHHHhcCHHH
Confidence 3679999999999987 789999999999999999875422 1 122345666665 5999888 9999999999999
Q ss_pred HHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC
Q 008700 237 LYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW 316 (557)
Q Consensus 237 rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl 316 (557)
+|+++++++||+|||++++ ++++.+||||+|+...++.... ......++++.+++...++++++|++.|||
T Consensus 118 rl~leaa~eALedAGi~~~---~i~~~~~gV~vG~~~~d~~~~~------~~~~~~~~~~~~~g~~~~~~a~ris~~lgl 188 (917)
T 2hg4_A 118 RIMLEISWEALERAGHDPV---SLRGSATGVFTGVGTVDYGPRP------DEAPDEVLGYVGTGTASSVASGRVAYCLGL 188 (917)
T ss_dssp HHHHHHHHHHHHHTTCCGG---GGTTSCEEEEEEECCCCCSCCT------TSSCGGGGGGHHHHHCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCChH---HcCCcceEEEEEeCCchhhhhh------hcCccccCcccccccccchHHHHHHHhcCC
Confidence 9999999999999999987 5668999999999865543211 112334456666777788999999999999
Q ss_pred CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceec
Q 008700 317 MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMG 396 (557)
Q Consensus 317 ~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~g 396 (557)
+||+++|+++|+|++.||++|+++|++|+||++||||+|.+.++..+..|...+.++ |++.|+|||.++||+++|
T Consensus 189 ~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls-----~~g~~~pFd~~adG~~~g 263 (917)
T 2hg4_A 189 EGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA-----ADGRCKPFSKAADGFGLA 263 (917)
T ss_dssp CSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBC-----TTSCCCTTBTTCCCBCBB
T ss_pred CCCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcC-----CccccCcccccccCCCCc
Confidence 999999999999999999999999999999999999999999998888888888887 788999999999999999
Q ss_pred CceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcH
Q 008700 397 EGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDI 476 (557)
Q Consensus 397 EGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~ 476 (557)
||++++||+++++|+++|++||++|+|+++++|+.+...+.|++.++.++|+++|+++|++|+||||||+|||||+++|+
T Consensus 264 EGagavVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~~Agl~p~dId~veaHgtgT~~gD~ 343 (917)
T 2hg4_A 264 EGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDP 343 (917)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCTTHHH
T ss_pred ceEEEEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEeeccCCCccCcH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC----CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccCC
Q 008700 477 KEYQALIHCFGQN----RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGHECACG 549 (557)
Q Consensus 477 ~E~~Al~~~~~~~----~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~~~~~~ 549 (557)
+|.++|.++|+.. .+++++++|+++||+++|+|++++++++++|+|++|||++|+++|||.|+|+.++++++.
T Consensus 344 ~E~~al~~~fg~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~vl~L~~~~ipp~~~~~~~~p~i~~~~~~~~v~~ 420 (917)
T 2hg4_A 344 IEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVS 420 (917)
T ss_dssp HHHHHHHTTTTTSSCTTSCCEEECTHHHHCBCGGGTTHHHHHHHHHHHHHTEECCCTTCCSBCTTSCC---CCEECC
T ss_pred HHHHHHHHHhccccCCCCceeccCcccceecchhhhHHHHHHHHHHHHhcCCcCCCCCCCCCCccCCccccceeecC
Confidence 9999999999852 368899999999999999999999999999999999999999999999999999998873
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-66 Score=596.00 Aligned_cols=377 Identities=26% Similarity=0.403 Sum_probs=338.8
Q ss_pred CCcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccC---CCCCCC-----------Ccccccccc---CCCCCCC-C
Q 008700 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIET---FDCTSF-----------PTKIAAEIK---SFSTDGW-V 224 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~---~~~~~~-----------~~~~~g~i~---~fd~~~~-i 224 (557)
.++|+||||||++|+| .++++||++|.+|++.+++++. |+...+ +.+.+++++ .||..+| |
T Consensus 5 ~~~iaIvG~~~~~P~g~~~~~~~w~~L~~g~~~~~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~FD~~~f~i 84 (915)
T 2qo3_A 5 SDPIAIVSMACRLPGGVNTPQRLWELLREGGETLSGFPTDRGWDLARLHHPDPDNPGTSYVDKGGFLDDAAGFDAEFFGV 84 (915)
T ss_dssp CCCEEEEEEEEECSTTCCSHHHHHHHHHTTCCCCEECCSSSCCCHHHHBCSCTTSTTCBSCCEEBCCSCSSEECHHHHTC
T ss_pred CCCEEEEeeEEECCCCCCCHHHHHHHHHcCCCcccCCCccccCChhhccCcccccCCCcccceeEEeCCccccCHhhcCC
Confidence 4679999999999999 8999999999999999998854 432211 234566665 5898888 9
Q ss_pred ChhhhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccc
Q 008700 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTN 304 (557)
Q Consensus 225 ~p~~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n 304 (557)
+|++++.|||+++|+++++++||+|||++++ ++++.++|||+|+..+++.... .....++++.+++...+
T Consensus 85 ~~~ea~~mdp~~rL~leaa~eALedAGi~~~---~i~~~~~gV~vG~~~~~~~~~~-------~~~~~~~~~~~~g~~~~ 154 (915)
T 2qo3_A 85 SPREAAAMDPQQRLLLETSWELVENAGIDPH---SLRGTATGVFLGVAKFGYGEDT-------AAAEDVEGYSVTGVAPA 154 (915)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHTTCCGG---GGTTBCCEEEEECCCCCTTTTC-------C---CTTCHHHHTTCHH
T ss_pred CHHHHHhCCHHHHHHHHHHHHHHHHcCCChH---HcCCcceEEEEEecCchHHhhh-------ccccccccccccccccc
Confidence 9999999999999999999999999999987 5667899999999876653211 12234667777888889
Q ss_pred hhHHHHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCC
Q 008700 305 MGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASR 384 (557)
Q Consensus 305 ~~a~~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~r 384 (557)
+++++|++.||++||+++|+++|+|++.||++|+++|++|+||++||||+|.+.+|..+..|..++.++ |++.|+
T Consensus 155 ~~a~ris~~lgl~Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls-----~~g~~~ 229 (915)
T 2qo3_A 155 VASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA-----ADGRSK 229 (915)
T ss_dssp HHHHHHHHHHTBCSCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBC-----SSCCCC
T ss_pred HHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccC-----CCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999888999888888 788999
Q ss_pred CCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 008700 385 PWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYI 464 (557)
Q Consensus 385 pfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~v 464 (557)
|||.++||+++|||++++|||++++|+++|++||++|+|+++++|+.+...+.|++.++.++|+++|+++|++|+|||||
T Consensus 230 ~Fd~~adG~v~gEGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~~Agl~p~dId~v 309 (915)
T 2qo3_A 230 AFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAV 309 (915)
T ss_dssp TTBTTCCCBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred cccCCCCceeecCceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCcEE
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred EEcCCCCccCcHHHHHHHHHHhcCC----CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCC
Q 008700 465 NAHATSTPAGDIKEYQALIHCFGQN----RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAI 540 (557)
Q Consensus 465 e~hgtgt~~~D~~E~~Al~~~~~~~----~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~ 540 (557)
|+|||||+++|++|..+|.++|+.. .+++++++|+++||+++|+|++++++++++|++++|||++|+++|||.|+|
T Consensus 310 e~HgtgT~~gD~~E~~al~~~f~~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~~l~L~~~~ipp~~~~~~~~p~~~~ 389 (915)
T 2qo3_A 310 EAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDW 389 (915)
T ss_dssp ECCCCCCTTTHHHHHHHHHHHTSSSCCTTSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCSSBCTTSCC
T ss_pred EecCCCCccCCHHHHHHHHHHhccccCCCCcccccCcccceeCCccccchHHHHHHHHHHhcCCCCCCCCCCCCCccccc
Confidence 9999999999999999999999853 368899999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcccc
Q 008700 541 DSGHECACGPKERET 555 (557)
Q Consensus 541 ~~~~~~~~~~~~~~~ 555 (557)
+.++|+++...++|+
T Consensus 390 ~~~~~~~~~~~~~w~ 404 (915)
T 2qo3_A 390 SSGGVALLAGNQPWR 404 (915)
T ss_dssp SSSSEEECSSCEECC
T ss_pred ccCceeeecCCcccc
Confidence 999999885444443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-66 Score=645.80 Aligned_cols=367 Identities=24% Similarity=0.379 Sum_probs=332.2
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccC-CCCCCCC-ccccccc---cCCCCCCC-CChhhhccCCHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIET-FDCTSFP-TKIAAEI---KSFSTDGW-VAPKLSKRMDKFMLY 238 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~-~~~~~~~-~~~~g~i---~~fd~~~~-i~p~~~~~md~~~rl 238 (557)
++||||||||++|+|.++++||++|.+|++++++.++ |+...+. ....+.+ +.||..+| |+|+|++.|||||||
T Consensus 2 ~~iaI~G~~~~~p~~~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~fd~~~f~i~~~ea~~~dpq~rl 81 (2512)
T 2vz8_A 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFDASFFGVHSKQANTMDPQLRM 81 (2512)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECSSSSCTTGGGCCSEEECCSCSSCCCTTTTTCCHHHHHTSCHHHHH
T ss_pred CCEEEEeeeeeCCCCCCHHHHHHHHHcCCccccCCCcccccccccCcccceecCCcccCCHhhcCCCHHHHHhcCHHHHH
Confidence 6899999999999999999999999999999998753 4433221 2334444 45999999 999999999999999
Q ss_pred HHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC
Q 008700 239 LLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG 318 (557)
Q Consensus 239 ~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G 318 (557)
+|+++||||+|||++++ .++++++|||+|++.+++. ..+......++++.+++...++++++|++.|||+|
T Consensus 82 ~l~~~~eAle~Ag~~~~---~~~~~~~gv~~G~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l~G 152 (2512)
T 2vz8_A 82 LLEVTYEAIVDGGINPA---SLRGTSTGVWVGVSSSDAS------EALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKG 152 (2512)
T ss_dssp HHHHHHHHHGGGTCCGG---GGTTCSCEEEEEECCCHHH------HHTTSCTTTSCGGGGGGTSTTHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHCCCChh---hcCCCCeEEEEEeccHHHH------HHHhcCccccCcceecccchhHHHHHHHHHhCCCC
Confidence 99999999999999976 6778999999999875432 22233445677888899999999999999999999
Q ss_pred CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 319 PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 319 p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
|+++|+++|+||++||++|+++|++|+||++||||+|.+++|..+..|.++++|+ |++.|||||.++|||++|||
T Consensus 153 ps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls-----~~g~c~~Fd~~adG~~~gEG 227 (2512)
T 2vz8_A 153 PSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS-----QDGTCRSFDAEGTGYCRAEA 227 (2512)
T ss_dssp CEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBC-----TTCSCCSSSTTCCCBCBBCE
T ss_pred CceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCC-----CCCCCCCCCCCCCCcceeee
Confidence 9999999999999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHH
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH-MTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIK 477 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~-~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~ 477 (557)
+|++|||++++|+ +|||+|+|+++++||++ ...+.|++.++.++|++||++||++|+||+|||+|||||+.||++
T Consensus 228 ~~~~vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P~~~~q~~~i~~al~~ag~~p~~i~yveaHGTgT~~gD~~ 303 (2512)
T 2vz8_A 228 VVAVLLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQ 303 (2512)
T ss_dssp EEEEEEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSCCHHHHHHHHHTTSGGGSSCTTSCCEEECCCCCCTTHHHH
T ss_pred EEEEEEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEeecCCCCCCCHH
Confidence 9999999999995 59999999999999974 456778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC--CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC-CCCCccccCC
Q 008700 478 EYQALIHCFGQN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA-IDSGHECACG 549 (557)
Q Consensus 478 E~~Al~~~~~~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~-~~~~~~~~~~ 549 (557)
|.+||.++|+.. .+++|+|+|+||||+++|||++++||++++|+|++||||+|+++|||.|+ |+..++.++.
T Consensus 304 E~~al~~~f~~~~~~~~~igS~Ks~iGH~~~AaG~~~~ik~~l~l~~~~ipp~~~~~~~~p~~~~~~~~~~~~~~ 378 (2512)
T 2vz8_A 304 ELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVD 378 (2512)
T ss_dssp HHHHHHHHHCSCSSSCCEEECHHHHHCBCGGGHHHHHHHHHHHHHTTTBCCCCSSCCSCCTTSSSSSSSSCEECC
T ss_pred HHHHHHHHhcccCCCCceeecccccccccccccchhHHHHHHHHHHCCCcCCCCCCCCCCccccccccCceEecC
Confidence 999999999853 46899999999999999999999999999999999999999999999997 8888877763
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-61 Score=554.24 Aligned_cols=423 Identities=23% Similarity=0.255 Sum_probs=341.0
Q ss_pred cCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHhhhhcccccccccccccCCCCccccccCCCCCCCCcEE
Q 008700 89 LPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVV 168 (557)
Q Consensus 89 ~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ia 168 (557)
...|+||+|.+.||++ ++.+++||+|+|.+ ...++.. ...+.............. .+....++++
T Consensus 890 i~~~~~~~i~~~tGiR-----l~~~~~fd~~~p~~-~~~L~e~-------~l~~d~~~~~~s~~~a~~--~~~~~~d~v~ 954 (1688)
T 2pff_A 890 VKAKYETSILEHSGIR-----LIEPELFNGYNPEK-KEMIQEV-------IVEEDLEPFEASKETAEQ--FKHQHGDKVD 954 (1688)
T ss_dssp CTTTSSSSSSSGGGTT-----TSSSSCCSSSSSSC-CSSSEEC-------CCCCCCSCCCCCCCCTTH--HHHHHHHSCT
T ss_pred HHHHHHHHHHHhcCCC-----CCCCccCCCCCHHH-HhHhhHH-------hcCCCCcccccChhhhhh--ccccCCCCeE
Confidence 3447899999999999 99999999998873 1111110 000000000000000000 0000013344
Q ss_pred EEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCcccccccc-CCCCCCC-CChhhhccCCHHHHHHHHHHHHH
Q 008700 169 VTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKA 246 (557)
Q Consensus 169 ItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~-~fd~~~~-i~p~~~~~md~~~rl~l~aa~eA 246 (557)
|+. -.++++||++|.+|++.+.+. ...++..++|+++ +||+.+| |+++++..|||+++|+++++++|
T Consensus 955 I~~-------i~~~eefW~~L~~G~~~i~p~----~~~~~~~vaG~Ip~gFD~~~fGIs~~ea~~mDP~qrLaLeAa~EA 1023 (1688)
T 2pff_A 955 IFE-------IPETGEYSVKLLKGATLYIPK----ALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEA 1023 (1688)
T ss_dssp TSC-------CCCCCSSSCCCCCCTTCCCCC----CCCEECCSSCSCCCCCCCCCSSCCTTTBTTBCSSTTHHHHHHHHH
T ss_pred Eec-------CCCHHHHHHHHHcCCCEEecC----CCCCCceEEEEECCCCChhhCCCCHHHHhccCHHHHHHHHHHHHH
Confidence 442 246789999999999999873 3456677888997 7999999 99999999999999999999999
Q ss_pred HHHCCCC-hhhh-hcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH-hhCCCCCeeee
Q 008700 247 LADGGIT-EDVM-NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSI 323 (557)
Q Consensus 247 LedAGl~-~~~i-~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~-~lgl~Gp~~tv 323 (557)
|+||||+ +.++ ..++.+++||++|++++++......+.... ....+.++.++....|.+++++++ .||++||+++|
T Consensus 1024 LedAGI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~-~~~~v~~~~l~~~~~nt~Aa~Vs~~~LGl~GPs~TV 1102 (1688)
T 2pff_A 1024 FIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRF-KDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTP 1102 (1688)
T ss_dssp HTTTTCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSS-SCCCCCSTTHHHHCTHHHHHHHHHSSCCCCCCCCCC
T ss_pred HHHcCCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHH-hcCCCCcchhccccHHHHHHHHHHHHcCCcCCeEEe
Confidence 9999998 6532 236789999999999998876655443221 112356677777788999999999 79999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc------CCCCCCCCCCCcCCCCCceecC
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGE 397 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~------~~~p~~~~rpfd~~~dG~v~gE 397 (557)
+++|+||+.||+.|++.|++|+||+|||||+|.+ ++..+..|..++.++.. +.+|++.|||||.+++||++||
T Consensus 1103 dtACASSL~AL~lA~~aIrsGeaDvaLVGGvE~m-sp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~~rdGfv~GE 1181 (1688)
T 2pff_A 1103 VGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQ 1181 (1688)
T ss_dssp CCTTTTTHHHHHHHHHHHHTTTCSCBCCCCCCCC-CTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSSSCCCCCCCS
T ss_pred cCCCchHHHHHHHHHHHHHCCCCCEEEEeeeccC-CHHHHHHHHhccccccChhhhhcCCChhhccCcCccCCCCCcccc
Confidence 9999999999999999999999999999999984 77777789999988843 4568999999999999999999
Q ss_pred ceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCC------------------hH------------------
Q 008700 398 GAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD------------------GV------------------ 441 (557)
Q Consensus 398 GAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~------------------~~------------------ 441 (557)
|+|++||+++++|+++|++||++|+|+++++|+.+.+.|.|. +.
T Consensus 1182 GAGavVLesle~Al~~G~~IyAvI~GsavnsDg~~~SipAPg~GiLt~Ar~~~G~~taPSp~ld~~~R~rql~~~~~~i~ 1261 (1688)
T 2pff_A 1182 GAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIK 1261 (1688)
T ss_dssp CCEEEEEECSHHHHSSSCCCCCEECCCCCCCCCCCSSSCCCCSSSSSSSSSCCCCSSCSSCCSCTTCCHHHHSHHHHHHH
T ss_pred ceEEEEeCcHHHHHHCCCceEEEEEEEEEECCCCccCCCCCCCCccchhhhcccccCCCCcccChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998866544431 10
Q ss_pred -------------------------HH-------------------------------HHHHHHHHHHcCCCCCCccEEE
Q 008700 442 -------------------------GV-------------------------------ILCIEKALAHSGVSREDVNYIN 465 (557)
Q Consensus 442 -------------------------~~-------------------------------~~ai~~aL~~Agl~~~dId~ve 465 (557)
.+ ..+|++||+++|++++||||||
T Consensus 1262 ~~~~~e~~~l~~e~~~~g~~~~~~~aQer~~~i~~~~~r~~~~~~~~~Gn~f~~~d~~~~aIr~ALa~AGLtpdDIdyVE 1341 (1688)
T 2pff_A 1262 DWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVAS 1341 (1688)
T ss_dssp HHHHHHHHHHHHHSSSSCSSHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTSSSSSCTTCCSHHHHTTSSCSSTTCCCCCC
T ss_pred HHHHhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhccCCceecchHHHHHHHHHHHHcCCCHHHeeEEE
Confidence 12 4689999999999999999999
Q ss_pred EcCCCCccCcHHHHHHHHHHhcC-----CCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 008700 466 AHATSTPAGDIKEYQALIHCFGQ-----NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539 (557)
Q Consensus 466 ~hgtgt~~~D~~E~~Al~~~~~~-----~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~ 539 (557)
+|||||++||++|.++|+++|+. ..++++++.|+++||+.||||++++++++++|++|+||||+|+++|||.++
T Consensus 1342 aHGTGT~lgD~iE~~AL~~af~~~gr~~g~pl~V~S~KsliGHp~GAAGa~~Lik~llaL~~G~IPptln~d~pdp~l~ 1420 (1688)
T 2pff_A 1342 FHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILE 1420 (1688)
T ss_dssp CCCCSCSSSSTTTTTTTGGGTGGGCCCTTCCCCCCCCTTTTCCCSSTHHHHHHHHHHHHSTTCCCCCCSCCSCCCTTCC
T ss_pred EeCCCCccccHHHHHHHHHHHhhhCcCCCCeEEEEeChhhhcchHHHhhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999974 135899999999999999999999999999999999999999999999995
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-59 Score=558.08 Aligned_cols=422 Identities=23% Similarity=0.268 Sum_probs=347.0
Q ss_pred ccccccccccccccCCCCCccccccCCCCchhhhhHHHHhhhhcccccccccccccCCCCccccccCCCCCCCCcEEEEe
Q 008700 92 EPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVVTG 171 (557)
Q Consensus 92 e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IaItG 171 (557)
++||++.+.+|++ ++.+.+||||+|.+. +.+.. .... . ...+......... .......+++.|+.
T Consensus 1067 ~~~~~i~~~tgir-----~~~~~~fd~~~p~~~--~~~~~--~~~~-~---~~~~~~~~~~~a~--~~~~~~~~~~~i~~ 1131 (1878)
T 2uv9_A 1067 KYEKYILEHSGIR-----LIEPELFGGYDPNRK--QLLQE--VVIE-Q---DLEPFEASKEQAE--EFKREHGDKVEIFE 1131 (1878)
T ss_dssp HHHHHHHHTSEEE-----ECCGGGGTTCCGGGE--EEEEE--EECC-S---CCCCEEECHHHHH--HHHHHHGGGEEEEE
T ss_pred HHHHHHHHhcCCC-----CCcccccCCCCHHHH--HHHHH--hhcc-c---CCCccccChhhhh--hccccCCCCeeEee
Confidence 6799999999999 999999999998743 11111 0000 0 0000000000000 00011135677763
Q ss_pred cceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCcccccccc-CCCCCCC-CChhhhccCCHHHHHHHHHHHHHHHH
Q 008700 172 MGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKALAD 249 (557)
Q Consensus 172 ~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~-~fd~~~~-i~p~~~~~md~~~rl~l~aa~eALed 249 (557)
..+.++||.+|.+|++++.+. ...++..++|+|+ +||+.+| |+++++..|||+++|+++++++||+|
T Consensus 1132 -------~~~~~~~w~~L~~G~~~i~p~----~~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~eAL~~ 1200 (1878)
T 2uv9_A 1132 -------IPETGQYTVRLRKGATLLIPK----ALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLS 1200 (1878)
T ss_dssp -------CTTTSCEEEEECTTCEEEEEE----EECCSCCEEEECCTTCCHHHHTCCHHHHHHSCHHHHHHHHHHHHHHHT
T ss_pred -------CCChHHHHHHHHcCCCeeeec----CCCCcceEEEEeCCCCCHhhcCCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 357789999999999999884 2356677889997 7999988 99999999999999999999999999
Q ss_pred CCCC-hhhh-hcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH-hhCCCCCeeeecCC
Q 008700 250 GGIT-EDVM-NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSISTA 326 (557)
Q Consensus 250 AGl~-~~~i-~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~-~lgl~Gp~~tv~~a 326 (557)
|||+ +.++ ..++..++||++|++++++......+..... ...+.++.++....|.++++|++ .||++||+++|+++
T Consensus 1201 AGi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~-~~~v~~~~~~~~~~n~~aa~vs~~~lg~~GP~~tv~tA 1279 (1878)
T 2uv9_A 1201 SGITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYL-DKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGA 1279 (1878)
T ss_dssp TTCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTT-TCCCCSCTTGGGSHHHHHHHHHHHTCCCCCCBCCBCCG
T ss_pred CCCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHh-cCCCCchhhhcchHHHHHHHHHHHhcCCCCCeEEEcCc
Confidence 9998 6532 2367899999999999998766554433211 13467778888889999999999 59999999999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc------CCCCCCCCCCCcCCCCCceecCceE
Q 008700 327 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 327 CaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~------~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
|+|++.||+.|++.|++|+||+|||||+|. .++.....|..++.++.. +.+|++.||||+..++||++|||+|
T Consensus 1280 CASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd~~r~Gfv~gEGag 1358 (1878)
T 2uv9_A 1280 CATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRNGFMESQGCG 1358 (1878)
T ss_dssp GGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSBTTCCCBCBBCEEE
T ss_pred chHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCCccCCCCCcccceeE
Confidence 999999999999999999999999999998 678888889999999852 5678999999999999999999999
Q ss_pred EEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCC-h---------------------------------------
Q 008700 401 VLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD-G--------------------------------------- 440 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~-~--------------------------------------- 440 (557)
++||+++++|+++|++||++|+|+++++|+.+.+.|.|. +
T Consensus 1359 ~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~~t~ar~~~~~~ps~~~~~~~r~~~~~~~~~~i~~~~~~ 1438 (1878)
T 2uv9_A 1359 VQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKES 1438 (1878)
T ss_dssp EEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCCCSCGGGGGCCCCCSSCCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCCCcchhhhhhhccccCCCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999877666651 0
Q ss_pred ---------------------------HHHH-------------------------------HHHHHHHHHcCCCCCCcc
Q 008700 441 ---------------------------VGVI-------------------------------LCIEKALAHSGVSREDVN 462 (557)
Q Consensus 441 ---------------------------~~~~-------------------------------~ai~~aL~~Agl~~~dId 462 (557)
..+. .+|++||+++|++++|||
T Consensus 1439 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Q~~~~~i~~~~~~q~~~a~~~~g~~~~~~~~~~~~ir~ALa~aGl~~~DId 1518 (1878)
T 2uv9_A 1439 EYLYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRGALATWGLTIDDLG 1518 (1878)
T ss_dssp HHHHHHHHHHHTTTTCCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTCTTSCHHHHHHHTTTCCGGGEE
T ss_pred hhhhhhHHHHhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHcCCCHHHee
Confidence 0122 789999999999999999
Q ss_pred EEEEcCCCCccCcHHHHHHHHHHhcC-----CCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 008700 463 YINAHATSTPAGDIKEYQALIHCFGQ-----NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAV 537 (557)
Q Consensus 463 ~ve~hgtgt~~~D~~E~~Al~~~~~~-----~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~ 537 (557)
|||+|||||++||++|.++|.++|+. ..++++++.|+++||+.||||++++++++++|++|+||||+|+++|||.
T Consensus 1519 ~veaHGTgT~~gD~~E~~al~~~f~~~~r~~~~pl~v~s~KsliGH~~gAAGa~~li~~l~~L~~g~iPp~~n~d~~dp~ 1598 (1878)
T 2uv9_A 1519 VASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKV 1598 (1878)
T ss_dssp EEECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCTTCHHHHHHHHHHHHHTTCEECCCTTCCSBCGG
T ss_pred EEEEcCCCCcccCHHHHHHHHHHHhhcCCCCCCceeEEecccccCChHhHhhHHHHHHHHHHHhcCCCCCCCCCCCCCCc
Confidence 99999999999999999999999973 1358999999999999999999999999999999999999999999999
Q ss_pred CC-CC
Q 008700 538 VA-ID 541 (557)
Q Consensus 538 ~~-~~ 541 (557)
|+ ++
T Consensus 1599 i~~~~ 1603 (1878)
T 2uv9_A 1599 MEQFD 1603 (1878)
T ss_dssp GGGCT
T ss_pred ccccc
Confidence 94 54
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=554.23 Aligned_cols=424 Identities=23% Similarity=0.265 Sum_probs=345.8
Q ss_pred CcccccccccccccccCCCCCccccccCCCCchhhhhHHHHhhhhcccccccccccccCCCCccccccCCCCCCCCcEEE
Q 008700 90 PFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRRLRLNRVTRSGEAMAVAVQPDEEVTTKKKPHMKQKRVVV 169 (557)
Q Consensus 90 ~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IaI 169 (557)
..++||++.+.||++ ++.+.+||+|+|... ..++.. ...+..... ....+.+. .......++|+|
T Consensus 1090 ~~~~~~~i~~~tgir-----~~~~~~fd~~~p~~~-~~l~~~-------~~~~~~~~~-~~~~~~a~-~~~~~~~~~~~I 1154 (1887)
T 2uv8_A 1090 KAKYETSILEHSGIR-----LIEPELFNGYNPEKK-EMIQEV-------IVEEDLEPF-EASKETAE-QFKHQHGDKVDI 1154 (1887)
T ss_dssp HHHHHHHHHHTSSEE-----ECCGGGGTTCCTTSE-EEEEEE-------ECSSCCCCE-EECHHHHH-HHHHHHGGGEEE
T ss_pred HHHHHHHHHHhcCCC-----CCCcccCCCCCHHHH-HHHHHH-------Hhccccccc-ccCccchh-hHhhcCCCceeE
Confidence 346699999999999 999999999988631 111110 000000000 00000000 000112466888
Q ss_pred EecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCcccccccc-CCCCCCC-CChhhhccCCHHHHHHHHHHHHHH
Q 008700 170 TGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYLLTAGKKAL 247 (557)
Q Consensus 170 tG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~-~fd~~~~-i~p~~~~~md~~~rl~l~aa~eAL 247 (557)
++ ..++++||.+|.+|++++.+.. ..++..++|+|+ +||+.+| |+++++..|||+++|+++++++||
T Consensus 1155 ~~-------~~~~~~~w~~L~~G~~~i~p~~----~~~~~~~aG~i~~~FD~~~fgI~~~ea~~mDp~~~l~L~aa~eAL 1223 (1887)
T 2uv8_A 1155 FE-------IPETGEYSVKLLKGATLYIPKA----LRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAF 1223 (1887)
T ss_dssp EE-------CTTTSCEEEEECTTCEEEEEEE----ECCSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ee-------cCchHHHHHHHHcCCceeeccc----CCCCccEEEEECCCCChhhcCCCHHHHHhcCHHHHHHHHHHHHHH
Confidence 75 2467899999999999998853 356678889997 7999999 999999999999999999999999
Q ss_pred HHCCCC-hhhh-hcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH-hhCCCCCeeeec
Q 008700 248 ADGGIT-EDVM-NELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWMGPNYSIS 324 (557)
Q Consensus 248 edAGl~-~~~i-~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~-~lgl~Gp~~tv~ 324 (557)
+||||+ +.++ ..++..++|||+|++++++......+.... ....+.++.++....|.+++++++ .||++||+++|+
T Consensus 1224 ~dAGi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~-~~~~v~~~~~~~~~~n~~aa~is~~~lgl~GP~~tv~ 1302 (1887)
T 2uv8_A 1224 IASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRF-KDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPV 1302 (1887)
T ss_dssp HHTTCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTT-TTCCCCTTHHHHHSTTHHHHHHHHHTTCCCSCCCCCC
T ss_pred HHcCCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHH-hcCCCCcchhhcchhhHHHHHHHHHHcCCccceEEee
Confidence 999995 6532 226789999999999998876655443221 113366677777888999999999 499999999999
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc------CCCCCCCCCCCcCCCCCceecCc
Q 008700 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR------NNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 325 ~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~------~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
++|+||+.||+.|++.|++|+||+|||||+|. +++..+..|..++.++.. +.+|++.|||||..++||++|||
T Consensus 1303 tACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e~~~g~~p~~~~RPfd~~r~Gfv~gEG 1381 (1887)
T 2uv8_A 1303 GACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFMEAQG 1381 (1887)
T ss_dssp CGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHHHHTTCCGGGSCCTTBTTCCSBCBBCE
T ss_pred cccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhcccCCCccCcCCCcccCCCcccccc
Confidence 99999999999999999999999999999998 578888889999999842 45688999999999999999999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCC------------------hH-------------------
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD------------------GV------------------- 441 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~------------------~~------------------- 441 (557)
+|++||+++++|+++|++||++|+|+++++|+.+.+.|.|. ..
T Consensus 1382 ag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~lt~ar~~~G~gt~ps~~ld~~~r~~ql~~~~~~i~~ 1461 (1887)
T 2uv8_A 1382 AGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKD 1461 (1887)
T ss_dssp EEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCCCSGGGGGGCCCCSCCSSCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCCCccccccccccccccCCCCcccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877655553 10
Q ss_pred ------------------------HH-------------------------------HHHHHHHHHHcCCCCCCccEEEE
Q 008700 442 ------------------------GV-------------------------------ILCIEKALAHSGVSREDVNYINA 466 (557)
Q Consensus 442 ------------------------~~-------------------------------~~ai~~aL~~Agl~~~dId~ve~ 466 (557)
.+ ..+|++||+++|++++||||||+
T Consensus 1462 ~~~~~~~~l~~~~~~~g~~~~~~~~Qe~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~air~ALa~AGl~p~DId~vea 1541 (1887)
T 2uv8_A 1462 WVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASF 1541 (1887)
T ss_dssp HHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTCSSSCHHHHHHHTTTCCGGGEEEEEC
T ss_pred HhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhchHHHHHHHHHHHHcCCCHHHceEEEe
Confidence 12 36899999999999999999999
Q ss_pred cCCCCccCcHHHHHHHHHHhcC-----CCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC-C
Q 008700 467 HATSTPAGDIKEYQALIHCFGQ-----NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA-I 540 (557)
Q Consensus 467 hgtgt~~~D~~E~~Al~~~~~~-----~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~-~ 540 (557)
|||||++||++|.++|.++|+. ..++++++.|+++||++||||++++++++++|++|+||||+|+++|||.|+ +
T Consensus 1542 HGTgT~~gD~~E~~Al~~~f~~~gr~~~~pl~v~s~KsliGH~~gAAGa~~li~~ll~L~~g~iPpt~n~d~~dp~l~~~ 1621 (1887)
T 2uv8_A 1542 HGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQF 1621 (1887)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCGGGHHHHHHHHHHHHHTTCEECCCTTCSSBCGGGGGC
T ss_pred cCCCCcccCHHHHHHHHHHHhhhccCCCCcEEEEecccceechHHHHhHHHHHHHHHHHHhCCcCCcCCCCCCCCccccc
Confidence 9999999999999999999963 135899999999999999999999999999999999999999999999995 5
Q ss_pred C
Q 008700 541 D 541 (557)
Q Consensus 541 ~ 541 (557)
+
T Consensus 1622 ~ 1622 (1887)
T 2uv8_A 1622 E 1622 (1887)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-54 Score=533.24 Aligned_cols=366 Identities=25% Similarity=0.341 Sum_probs=315.8
Q ss_pred CCHHHHHHHHHcCCCcc--eec---cCCCC-------------CCCCcccccccc-CCCCCCC-CChhhhccCCHHHHHH
Q 008700 180 HEPDVFYNNLLEGVSGI--SEI---ETFDC-------------TSFPTKIAAEIK-SFSTDGW-VAPKLSKRMDKFMLYL 239 (557)
Q Consensus 180 ~~~~~lw~~L~~G~~~i--~~~---~~~~~-------------~~~~~~~~g~i~-~fd~~~~-i~p~~~~~md~~~rl~ 239 (557)
.+.++.|+...++.+.+ .+. ++|+. ..++..++|+++ +||+.+| |++++++.|||+++|+
T Consensus 2572 ~s~~~a~~~~~~~~~~~~i~~~~~~~~W~~~~~~~~~i~~p~~~~~~~~~gG~i~d~FD~~~fgIs~rea~~mDp~~rL~ 2651 (3089)
T 3zen_D 2572 SSEADARAFVQFDPEHTVARPLPDSSDWEVTRKAGTEIRVPRKTKLSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWN 2651 (3089)
T ss_dssp ECHHHHHHHHTTSTTSEEEEECTTTCCEEEEECTTCEEEEEEEECCSCCEEECCCTTCCTTTTTCCHHHHHHSCHHHHHH
T ss_pred CCHHHHHHHHHhCCCcceEEeCCCCcceeeeecCCCCcCCCCcCCccceEEEEcCCCCChhhcCCCHHHHHhcCHHHHHH
Confidence 46777777776655443 332 22322 124566788884 7999999 9999999999999999
Q ss_pred HHHHHHHHHHCCCChhhhh-cccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH-hhCCC
Q 008700 240 LTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM-DLGWM 317 (557)
Q Consensus 240 l~aa~eALedAGl~~~~i~-~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~-~lgl~ 317 (557)
++++++||+|||+++++++ ..++.++|||+|++++++....+.+..+..+....++ .++..+.|..++++++ ++|++
T Consensus 2652 l~aa~eALedAGi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~aa~is~~~lGl~ 2730 (3089)
T 3zen_D 2652 IVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPND-ILQEVLPNVVAAHVMQSYVGGY 2730 (3089)
T ss_dssp HHHHHHHHTTSCSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHTTCCCCTT-HHHHTSTTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhcCCCccch-hhccccccHHHHHHHHHHcCCC
Confidence 9999999999999988664 2468999999999999988777666655443333333 3566778889999986 46999
Q ss_pred CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhc------cCCCCCCCCCCCcCCCC
Q 008700 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ------RNNDPTKASRPWDINRD 391 (557)
Q Consensus 318 Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~------~~~~p~~~~rpfd~~~d 391 (557)
||+++|+++|+||++||++|+++|++|+||++||||+|. +++..+..|..++.++. .+.+|++.|||||.+++
T Consensus 2731 GPs~tV~tACSSsl~Al~~A~~~IrsG~~d~aLaGGve~-ls~~~~~~f~~~~als~~~~~~~~~~sp~~~crpFd~~~d 2809 (3089)
T 3zen_D 2731 GAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD-LTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRL 2809 (3089)
T ss_dssp SCEECCBCTTCHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHHTTCCTTTSCCSSBTTCC
T ss_pred CCceeeccchhhHHHHHHHHHHHHHCCCCCeeEEeeecc-cCHHHHHHHHHhhhhhcchhhhhccCCcccccCccccCCC
Confidence 999999999999999999999999999999999999999 78888889999888763 45678999999999999
Q ss_pred CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCCh-------HHHHHHHHHHHHHcCCCCCCccEE
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG-------VGVILCIEKALAHSGVSREDVNYI 464 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~-------~~~~~ai~~aL~~Agl~~~dId~v 464 (557)
||++|||+|++||+++++|+++|++||++|.+.+.++|+++.+.+.|.. .++.++|+++|+++|++++|||||
T Consensus 2810 G~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~~~~~aP~~g~~~a~~~~q~~ai~~AL~~AGl~p~DIdyV 2889 (3089)
T 3zen_D 2810 GFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALGAARGGRESTLARSLAQLGVGADDIAVI 2889 (3089)
T ss_dssp CBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCCCCSSCCCCGGGGGSTTGGGSHHHHHHHTTTCCGGGEEEE
T ss_pred CEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcccCccCCchhHHhHhhhhHHHHHHHHHHHcCCCHHHeeEE
Confidence 9999999999999999999999999999999999999999988887752 356789999999999999999999
Q ss_pred EEcCCCCccCcHHHHH---HHHHHhcCC--CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 008700 465 NAHATSTPAGDIKEYQ---ALIHCFGQN--RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539 (557)
Q Consensus 465 e~hgtgt~~~D~~E~~---Al~~~~~~~--~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~ 539 (557)
|+|||||++||++|.+ ++.++|+.. .+++|+++|+++||++||||++++++++++|+|++|||++|+++|||.|+
T Consensus 2890 EaHGTGT~lgD~~E~~al~al~~~fg~~~~~~~~v~s~Ks~iGH~~gAAG~~~lik~ll~L~~g~iPpt~~~~~~np~i~ 2969 (3089)
T 3zen_D 2890 SKHDTSTLANDPNETELHERIADSMGRAPGNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDELA 2969 (3089)
T ss_dssp ECCCCCCTTHHHHHHHHHHHHHHHTTCCTTCCEEEECSHHHHCBCSTTHHHHHHHHHHHHHHHCCBCCCTTCSSBCGGGG
T ss_pred EEecCCcccccHHHHHHHHHHHHHhCccCCCcceecccccccCCchhhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCcc
Confidence 9999999999999999 678889864 46899999999999999999999999999999999999999999999999
Q ss_pred CCCCccccC
Q 008700 540 IDSGHECAC 548 (557)
Q Consensus 540 ~~~~~~~~~ 548 (557)
+..+|+++
T Consensus 2970 -~~~~~~~~ 2977 (3089)
T 3zen_D 2970 -TSGHFVWV 2977 (3089)
T ss_dssp -GCSSEEEC
T ss_pred -ccCCeeec
Confidence 67777765
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=298.81 Aligned_cols=248 Identities=17% Similarity=0.255 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHC-CCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 235 FMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 235 ~~rl~l~aa~eALedA-Gl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
.++|+++++++||+|+ |++++++| +|++|+..+... ..+.++.++++.
T Consensus 30 ~~~L~~~a~~~AL~dA~gl~~~~id-------~v~~g~~~~~~~------------------------~~~~~a~~ia~~ 78 (390)
T 1wdk_C 30 AEDMSAHLISKVLERNSKVDPGEVE-------DVIWGCVNQTLE------------------------QGWNIARMASLM 78 (390)
T ss_dssp HHHHHHHHHHHHHHHCTTSCGGGEE-------EEEEECSSBSBT------------------------TTTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCCHHHCC-------EEEEEeeccccC------------------------CCCcHHHHHHHH
Confidence 4789999999999999 99987666 799997643211 125678999999
Q ss_pred hCC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhhHH-----HHH--------Hhhh------
Q 008700 314 LGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGLG-----GFV--------ACRA------ 371 (557)
Q Consensus 314 lgl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~~~-----~~~--------~~~~------ 371 (557)
+|+ +||+++|+++|+|++.||+.|+++|++|++|++||||+|.+.. |.... .+. .++.
T Consensus 79 lgl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~ 158 (390)
T 1wdk_C 79 TQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLG 158 (390)
T ss_dssp SSSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHH
T ss_pred cCCCCCccEEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHHH
Confidence 999 8999999999999999999999999999999999999997643 22110 000 0111
Q ss_pred ----hhcc----------------------CCC--C------CCCCCCCcCC---------------------CCCce--
Q 008700 372 ----LSQR----------------------NND--P------TKASRPWDIN---------------------RDGFV-- 394 (557)
Q Consensus 372 ----Ls~~----------------------~~~--p------~~~~rpfd~~---------------------~dG~v-- 394 (557)
++.. .++ | .+.++|||.+ ++|++
T Consensus 159 ~~~g~s~e~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt~ 238 (390)
T 1wdk_C 159 KMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTA 238 (390)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCCG
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEec
Confidence 1110 000 2 1223789988 79999
Q ss_pred -----ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCC
Q 008700 395 -----MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHAT 469 (557)
Q Consensus 395 -----~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgt 469 (557)
++||++++||+++++|+++|++++++|+|++.+++. |.+.+.++..+++++|+++|++++||||||+|++
T Consensus 239 ~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~ve~~d~ 313 (390)
T 1wdk_C 239 GTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVD-----PAIMGYGPVPATQKALKRAGLNMADIDFIELNEA 313 (390)
T ss_dssp GGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHHHTCCGGGCCEEEECCS
T ss_pred hhcCcccchhheeEEecHHHHHHcCCCccEEEEEEEEeccC-----hhhcchhHHHHHHHHHHHcCCChhhCcEEEeccC
Confidence 999999999999999999999999999999998643 3445667889999999999999999999999998
Q ss_pred CCccCcHHHHHHHHHHhcCC----CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 470 STPAGDIKEYQALIHCFGQN----RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 470 gt~~~D~~E~~Al~~~~~~~----~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
++. |..++.+.|+.. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 314 f~~-----~~~~~~~~lg~~~~~~~~vn~~gg~~~~GHp~gasG~~~~~~~~~~L~~~ 366 (390)
T 1wdk_C 314 FAA-----QALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN 366 (390)
T ss_dssp BHH-----HHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CHH-----HHHHHHHHcCCCCCCCCcCCCCcCcccccCCcchhHHHHHHHHHHHHhhc
Confidence 875 556677778743 3578999999999999999999999999999986
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=295.06 Aligned_cols=246 Identities=21% Similarity=0.288 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
++|+++++++||+|||++++++| +|++|+..++. ....++.++++.+|
T Consensus 31 ~~L~~~a~~~Al~dAGl~~~~id-------~v~~g~~~~~~-------------------------~~~~~a~~ia~~lg 78 (397)
T 1wl4_A 31 QDLGSTVIKEVLKRATVAPEDVS-------EVIFGHVLAAG-------------------------CGQNPVRQASVGAG 78 (397)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCCTT-------------------------SCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCCCC-------------------------CCCHHHHHHHHHcC
Confidence 67999999999999999987666 68998764321 12357889999999
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhhH--------------H-----H----H--H
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIGL--------------G-----G----F--V 367 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~~--------------~-----~----~--~ 367 (557)
+ +||+++|+++|+|++.||+.|+++|++|++|++||||+|.+.. |... . + | .
T Consensus 79 l~~~~p~~~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 158 (397)
T 1wl4_A 79 IPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC 158 (397)
T ss_dssp CCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTTCC
T ss_pred CCCCccEEEecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccccc
Confidence 9 8999999999999999999999999999999999999998753 2100 0 0 0 1
Q ss_pred Hhhhhhc-------------------------cC-----------------------CCCCC------------CCCC-C
Q 008700 368 ACRALSQ-------------------------RN-----------------------NDPTK------------ASRP-W 386 (557)
Q Consensus 368 ~~~~Ls~-------------------------~~-----------------------~~p~~------------~~rp-f 386 (557)
.++.+++ .+ .+++. .+|| |
T Consensus 159 ~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf 238 (397)
T 1wl4_A 159 HMGITAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYF 238 (397)
T ss_dssp BHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCCSS
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCCcc
Confidence 1222110 00 00222 4889 9
Q ss_pred cCCCCCce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 008700 387 DINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459 (557)
Q Consensus 387 d~~~dG~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~ 459 (557)
|.+++|++ ++|||+++||+++++|+++|++++++|+|++.+++ .|.+.+.++..+++++|+++|++++
T Consensus 239 d~~~~G~vt~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~ 313 (397)
T 1wl4_A 239 LTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV-----EPSIMGIGPIPAIKQAVTKAGWSLE 313 (397)
T ss_dssp CCSSCCCCCTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred CCCCCCCEechhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeec-----ChhhccchHHHHHHHHHHHcCCCHH
Confidence 99999999 99999999999999999999999999999998863 3445567789999999999999999
Q ss_pred CccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 460 DVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 460 dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
||||||+|++++. ...++.+.|+.. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 314 dId~ie~~d~f~~-----~~l~~~~~lg~~~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~ 373 (397)
T 1wl4_A 314 DVDIFEINEAFAA-----VSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTLERM 373 (397)
T ss_dssp GCCEEEECCSBHH-----HHHHHHHHHTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCEEEEecccHH-----HHHHHHHHcCCCCcCcCCCcCccccCCChhhhHHHHHHHHHHHHhhc
Confidence 9999998754432 224467788753 4688999999999999999999999999999985
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=290.03 Aligned_cols=245 Identities=21% Similarity=0.300 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
.++|+++++++||+|+|++++++| ++++|+..+.. .....+.++++.+
T Consensus 27 ~~~L~~~a~~~Al~dAgl~~~~id-------~~~~g~~~~~~-------------------------~~~~~a~~ia~~l 74 (392)
T 2vu1_A 27 AHELGATVISAVLERAGVAAGEVN-------EVILGQVLPAG-------------------------EGQNPARQAAMKA 74 (392)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCCTT-------------------------SCSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCCCC-------------------------CCcHHHHHHHHHc
Confidence 467999999999999999987666 68888754211 1235788999999
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhh------H-----HHHH-------------
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG------L-----GGFV------------- 367 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~------~-----~~~~------------- 367 (557)
|++ ||+++|+++|+|++.||+.|+++|++|++|++||||+|.+.. |.. . ..+.
T Consensus 75 gl~~~~p~~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (392)
T 2vu1_A 75 GVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYG 154 (392)
T ss_dssp TCCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTTC
T ss_pred CCCCCceEEEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhccccccccc
Confidence 998 999999999999999999999999999999999999998643 210 0 0000
Q ss_pred -Hhhhhh----------c---------------------c-CCC--C-----CCCCCCCcCC------------------
Q 008700 368 -ACRALS----------Q---------------------R-NND--P-----TKASRPWDIN------------------ 389 (557)
Q Consensus 368 -~~~~Ls----------~---------------------~-~~~--p-----~~~~rpfd~~------------------ 389 (557)
.++.++ . . ..+ | .+.|+|||.+
T Consensus 155 ~~~~~~a~~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~~~~~f~~d~~~r~~~t~e~~~~~~~v 234 (392)
T 2vu1_A 155 YHMGTTAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPA 234 (392)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTTCCEEECSCSSCCTTCCHHHHHTCCCS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCCCceeeccccccCCCCCHHHHhcCCCc
Confidence 012211 0 0 000 1 0126889887
Q ss_pred --CCCce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 008700 390 --RDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 390 --~dG~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~d 460 (557)
++|++ ++|||+++||+++++|+++|++++++|+|++.+++ .|.+.+.++..+++++|+++|++++|
T Consensus 235 ~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~d 309 (392)
T 2vu1_A 235 FDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGV-----DPKVMGTGPIPASRKALERAGWKIGD 309 (392)
T ss_dssp SCTTCCCCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGG
T ss_pred cCCCCCeeCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeec-----ChhhcchhHHHHHHHHHHHcCCCHHH
Confidence 78999 99999999999999999999999999999998864 24445667889999999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHH--HHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 461 VNYINAHATSTPAGDIKEYQA--LIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~A--l~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|||||+| |..|..+ +.+.|+-. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 310 Id~ie~~-------d~f~~~~l~~~~~lg~~~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~ 368 (392)
T 2vu1_A 310 LDLVEAN-------EAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR 368 (392)
T ss_dssp CSEEEEC-------CSBHHHHHHHHHHHCCCGGGBSTTCCHHHHCCCGGGHHHHHHHHHHHHHHHH
T ss_pred cCEEEec-------cccHHHHHHHHHHcCCCcccCCCCccHhhhCCChhhHHHHHHHHHHHHHhcc
Confidence 9999988 4455555 46677743 4688999999999999999999999999999985
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-32 Score=285.14 Aligned_cols=246 Identities=15% Similarity=0.223 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHCC----CChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHH
Q 008700 235 FMLYLLTAGKKALADGG----ITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAML 310 (557)
Q Consensus 235 ~~rl~l~aa~eALedAG----l~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~i 310 (557)
..+|+++++++||+|+| ++++++| +|++|+..++. ..+..+.++
T Consensus 35 ~~~La~~Aa~~Al~~Ag~~~~l~~~~id-------~v~~g~~~~~~-------------------------~~~~~a~~v 82 (393)
T 1afw_A 35 TDYLLYNFLNEFIGRFPEPLRADLNLIE-------EVACGNVLNVG-------------------------AGATEHRAA 82 (393)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTCGGGCC-------CEEEECSSSBG-------------------------GGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCHHHCC-------EEEEEecCCCC-------------------------CCChHHHHH
Confidence 35799999999999999 9987666 69999764321 235578899
Q ss_pred HHhhCC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh------------H--HHH-----HHh
Q 008700 311 AMDLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG------------L--GGF-----VAC 369 (557)
Q Consensus 311 a~~lgl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~------------~--~~~-----~~~ 369 (557)
+..+|+ ++|+++|+++|+|++.||+.|+++|++|++|++||+|+|.+..... + .++ ..+
T Consensus 83 a~~lGl~~~~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 162 (393)
T 1afw_A 83 CLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPM 162 (393)
T ss_dssp HHHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSCH
T ss_pred HHHcCCCCCceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchhH
Confidence 999999 7999999999999999999999999999999999999997643211 0 011 111
Q ss_pred hhhhc---------------------c----C--------------------CCCCCC------------CCC-CcCCCC
Q 008700 370 RALSQ---------------------R----N--------------------NDPTKA------------SRP-WDINRD 391 (557)
Q Consensus 370 ~~Ls~---------------------~----~--------------------~~p~~~------------~rp-fd~~~d 391 (557)
+.+++ . + .++++. +|| ||.++
T Consensus 163 ~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~- 241 (393)
T 1afw_A 163 GITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR- 241 (393)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC----
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC-
Confidence 11100 0 0 112333 446 87554
Q ss_pred Cce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 008700 392 GFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYI 464 (557)
Q Consensus 392 G~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~v 464 (557)
|++ ++||++++||+++++|+++|++++++|+|++.+++. |.+.+.+...+++++|+++|++++|||||
T Consensus 242 G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~v 316 (393)
T 1afw_A 242 GTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVP-----PEIMGVGPAYAIPKVLEATGLQVQDIDIF 316 (393)
T ss_dssp CCCBTTTBCCBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHHHHTCCGGGCSEE
T ss_pred CCeechhcCcccchhheeeEecHHHHHHcCCCccEEEEEEEEeccC-----hhhcchhHHHHHHHHHHHcCCCHHHCCEE
Confidence 666 899999999999999999999999999999998873 33445678899999999999999999999
Q ss_pred EEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 465 NAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 465 e~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|+|+++|. .|...++ .|+-. .++++++.+..+||++||+|+.++++++++|+++
T Consensus 317 e~h~~ft~----~~l~~~~-~lg~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~ 371 (393)
T 1afw_A 317 EINEAFAA----QALYCIH-KLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKD 371 (393)
T ss_dssp EECCSBHH----HHHHHHH-HHTCCGGGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCTT
T ss_pred EEeccCHH----HHHHHHH-HhCCCCcCcCCCCChhhcCCchhhHHHHHHHHHHHHHhhc
Confidence 99999996 5666654 35532 3577888888899999999999999999999885
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=284.20 Aligned_cols=246 Identities=17% Similarity=0.238 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..+|+++++++||+|||++++++| +|++|+..++.. .+..+..++..+
T Consensus 55 ~~~L~~~Aa~~AL~dAgl~~~~id-------~v~~g~~~~~~~-------------------------~~~~a~~~a~~l 102 (418)
T 2iik_A 55 PDELLSAVMTAVLKDVNLRPEQLG-------DICVGNVLQPGA-------------------------GAIMARIAQFLS 102 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------CEEEECSSSBGG-------------------------GHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCCccc-------------------------cccHHHHHHHHc
Confidence 478999999999999999988666 699998653221 234566788889
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh---------H------------HHHHH---
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG---------L------------GGFVA--- 368 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~---------~------------~~~~~--- 368 (557)
|+ ++|+++|+++|+|++.||+.|+++|++|++|++||+|+|.+..... + .++..
T Consensus 103 Gl~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ 182 (418)
T 2iik_A 103 DIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENV 182 (418)
T ss_dssp TCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHHH
T ss_pred CCCCCceEEEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHHH
Confidence 99 7999999999999999999999999999999999999998754210 0 01100
Q ss_pred ---------------------------hhhhhcc------------------CCCCCCCCCC-------------CcCCC
Q 008700 369 ---------------------------CRALSQR------------------NNDPTKASRP-------------WDINR 390 (557)
Q Consensus 369 ---------------------------~~~Ls~~------------------~~~p~~~~rp-------------fd~~~ 390 (557)
.+.+... ..++++.||| ||.++
T Consensus 183 a~~~gitre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~~ 262 (418)
T 2iik_A 183 AERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDG 262 (418)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCCC
Confidence 0111100 0123668898 99876
Q ss_pred -----CCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 008700 391 -----DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYIN 465 (557)
Q Consensus 391 -----dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve 465 (557)
||++++|||+++||++++.|+++|++|+++|.|++.+.. .|.+.+.+...+++++|+++|++++||||||
T Consensus 263 ~~t~~d~~~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~vE 337 (418)
T 2iik_A 263 STTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGV-----PPDIMGIGPAYAIPVALQKAGLTVSDVDIFE 337 (418)
T ss_dssp CCCSTTBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ceeeccccCCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccC-----CchhcchhHHHHHHHHHHHcCCCHHHCCeee
Confidence 999999999999999999999999999999999988753 3444466788999999999999999999999
Q ss_pred EcCCCCccCcHHHHHHHHHHhcCCCCcccccCc--ccccchhhhHHHHHHHHHHHHHHcC
Q 008700 466 AHATSTPAGDIKEYQALIHCFGQNRGLRVNSTK--SMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 466 ~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K--~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+|++++ .+|..|+++|.. . +.+|+..+ .++||++||+|+.++++++++|+++
T Consensus 338 ~h~af~-~~~~~~~~~lg~----~-~~~vN~~GG~~a~GHp~GAsG~~~~~~~~~~L~~~ 391 (418)
T 2iik_A 338 INEAFA-SQAAYCVEKLRL----P-PEKVNPLGGAVALGHPLGCTGARQVITLLNELKRR 391 (418)
T ss_dssp ECCSBH-HHHHHHHHHHTC----C-GGGBCTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeccch-HHHHHHHHHcCC----C-ccccCCCCCeeeecCChhhhHHHHHHHHHHHHHhc
Confidence 998665 578888888742 1 23455555 5799999999999999999999874
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-32 Score=284.44 Aligned_cols=245 Identities=18% Similarity=0.268 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
.++|+++++++||+|+|++++++| ++++|+..+. ...+..+.++++.+
T Consensus 32 ~~~l~~~a~~~Al~dAgl~~~~id-------~~~~g~~~~~-------------------------~~~~~~a~~va~~l 79 (395)
T 2ib8_A 32 ATKLGSIAIQGAIEKAGIPKEEVK-------EAYMGNVLQG-------------------------GEGQAPTRQAVLGA 79 (395)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCCT-------------------------TSCSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccCC-------------------------CCCchHHHHHHHHc
Confidence 467999999999999999987666 6888875421 11234688999999
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh-------------------HHH--------
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG-------------------LGG-------- 365 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~-------------------~~~-------- 365 (557)
|+ +||+++|+++|+|++.||+.|+++|++|++|++||||+|.+..... +..
T Consensus 80 gl~~~~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (395)
T 2ib8_A 80 GLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKI 159 (395)
T ss_dssp TCCTTCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTTE
T ss_pred CCCCCceEEEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCcccccccccccccccccccccccccccccccc
Confidence 99 8999999999999999999999999999999999999997543211 000
Q ss_pred ---------HHHhhh------------------------hhcc---------C-----CCCCCCCCC--CcC--------
Q 008700 366 ---------FVACRA------------------------LSQR---------N-----NDPTKASRP--WDI-------- 388 (557)
Q Consensus 366 ---------~~~~~~------------------------Ls~~---------~-----~~p~~~~rp--fd~-------- 388 (557)
....+. +... . .+.++.+++ |+.
T Consensus 160 ~m~~~a~~~~~~~g~sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~~f 239 (395)
T 2ib8_A 160 HMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVF 239 (395)
T ss_dssp EHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCCTT
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCccc
Confidence 011110 0000 0 001122222 554
Q ss_pred -CCCCce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 008700 389 -NRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 389 -~~dG~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~d 460 (557)
+++|++ ++||++++||++++.|+++|+++|++|+|++.++ +.|.+.+.++..+++++|+++|++++|
T Consensus 240 ~~~~g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~~Agl~~~d 314 (395)
T 2ib8_A 240 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA-----VEPIDFPIAPVYAASMVLKDVGLKKED 314 (395)
T ss_dssp CSSSCCCCTTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGGG
T ss_pred cCCCCCcccccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEec-----cChhhccccHHHHHHHHHHHcCCCHHH
Confidence 568999 9999999999999999999999999999999764 233344667889999999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHHHHHH--hcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 461 VNYINAHATSTPAGDIKEYQALIHC--FGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~Al~~~--~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|||||+| |..|..+|..+ |+-. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 315 Id~ie~~-------D~f~~~~l~~~e~lg~~~~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~ 373 (395)
T 2ib8_A 315 IAMWEVN-------EAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQG 373 (395)
T ss_dssp EEEEEEC-------CSBHHHHHHHHHHHTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHSCTT
T ss_pred cCEEEEc-------cccHHHHHHHHHHcCCCccccCCCcchhhcCCChhHHHHHHHHHHHHHHhhC
Confidence 9999976 66677777766 7643 4688999999999999999999999999999873
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=281.35 Aligned_cols=249 Identities=18% Similarity=0.236 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHHC-CCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 234 KFMLYLLTAGKKALADG-GITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 234 ~~~rl~l~aa~eALedA-Gl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
+.++|+++++++||+|+ |+++++|| +|++|+..... ......+.+++.
T Consensus 26 ~~~~L~~~a~~~Al~~a~gi~~~~Id-------~v~~g~~~~~~------------------------~~~~~~a~~~~~ 74 (387)
T 3goa_A 26 RAEDLSAHLMRSLLARNPSLTAATLD-------DIYWGCVQQTL------------------------EQGFNIARNAAL 74 (387)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCGGGCC-------EEEEECSCCSB------------------------TTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHcC-------EEEEEcccCCc------------------------ccccHHHHHHHH
Confidence 45789999999999999 99998887 79999764211 112346788999
Q ss_pred hhCC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH---------------------------
Q 008700 313 DLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL--------------------------- 363 (557)
Q Consensus 313 ~lgl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~--------------------------- 363 (557)
.+|+ .+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+......
T Consensus 75 ~~Gl~~~~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ 154 (387)
T 3goa_A 75 LAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEML 154 (387)
T ss_dssp HTTCCTTSCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHHH
T ss_pred HcCCCCCCcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHHH
Confidence 9999 68999999999999999999999999999999999999987543210
Q ss_pred -----------HHHH---Hhh--------hhhcc--------------CCCCCCCCCC-------------CcC------
Q 008700 364 -----------GGFV---ACR--------ALSQR--------------NNDPTKASRP-------------WDI------ 388 (557)
Q Consensus 364 -----------~~~~---~~~--------~Ls~~--------------~~~p~~~~rp-------------fd~------ 388 (557)
..+. ..+ .+... ..++++.+|+ |+.
T Consensus 155 ~~~~g~tre~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~t 234 (387)
T 3goa_A 155 SRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234 (387)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCcee
Confidence 0000 000 11100 0123444443 554
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHA 468 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hg 468 (557)
..|+..++||++++||+++++|+++|++++++|+|++.+++.. .+.+.+...+++++|+++|++++||||||+|+
T Consensus 235 ~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~~-----~~~~~~~~~a~~~al~~agl~~~did~ve~h~ 309 (387)
T 3goa_A 235 AGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDP-----SIMGYGPVPASKLALKKAGLSASDIDVFEMNE 309 (387)
T ss_dssp GGGBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCT-----TSTTCTHHHHHHHHHHHHTCCGGGCSEEEECC
T ss_pred cccCCCcCccEEEEEEecHHHHHHcCCCccEEEEEEEEcCCCC-----CcchHHHHHHHHHHHHHcCCCHHHcCEEEEeC
Confidence 2567789999999999999999999999999999999998753 33344568999999999999999999999999
Q ss_pred CCCccCcHHHHHHHHHHhcC----CCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 469 TSTPAGDIKEYQALIHCFGQ----NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 469 tgt~~~D~~E~~Al~~~~~~----~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+++. .+...+ +.++- ..++++++.|..+||++||+|+.++++++++|+++
T Consensus 310 ~f~~----~~~~~~-~~lg~~~~~~~~vn~~gg~~~~GH~~gasG~~~~~~~~~~L~~~ 363 (387)
T 3goa_A 310 AFAA----QILPCI-KDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363 (387)
T ss_dssp SBHH----HHHHHH-HHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cchH----HHHHHH-HHhCCCcCCCccCCCCCchhcccCCHHHHHHHHHHHHHHHHHhc
Confidence 9887 333333 33442 13577888899999999999999999999999974
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=278.71 Aligned_cols=247 Identities=21% Similarity=0.312 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+++++++||+|+|+++++|| +|++|+.... ......+.+++..+
T Consensus 31 ~~~L~~~A~~~AL~~agl~~~dId-------~vi~g~~~~~-------------------------~~~~~~a~~v~~~l 78 (396)
T 4dd5_A 31 AVELGVTAAKEAIKRANITPDMID-------ESLLGGVLTA-------------------------GLGQNIARQIALGA 78 (396)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-------EEEEECSCCT-------------------------TSCSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeecCC-------------------------CCCchHHHHHHHHc
Confidence 467999999999999999998887 7999976421 12235688999999
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHH----------------------------
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG---------------------------- 364 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~---------------------------- 364 (557)
|+ .+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.......
T Consensus 79 Gl~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (396)
T 4dd5_A 79 GIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMSPYLVPSARYGARMGDAAFVDSMIKDGLSDIFN 158 (396)
T ss_dssp TCCTTSCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEESTTCCEECTTTTTCCCSSCCCCEEHHHHHTSEETTT
T ss_pred CCCCCceEEEeccccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccCCcccccccccccccCcccccchhhhcccccccc
Confidence 99 589999999999999999999999999999999999999875421100
Q ss_pred ----HH----------------------HHh--------hhhhcc-------------CCCCCCCCCC------------
Q 008700 365 ----GF----------------------VAC--------RALSQR-------------NNDPTKASRP------------ 385 (557)
Q Consensus 365 ----~~----------------------~~~--------~~Ls~~-------------~~~p~~~~rp------------ 385 (557)
+. +.. +.+... ..++++..|+
T Consensus 159 ~~~~~~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~f~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~~ 238 (396)
T 4dd5_A 159 NYHMGITAENIAEQWNITREEQDELALASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDKDEYIKPGTTMEKLAKLRP 238 (396)
T ss_dssp TEEHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEC----CEEECSCSCCCTTCCHHHHHHCCB
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHcCCcccceeeeeeccCCCceeecCcccccCCCCHHHHhhCCC
Confidence 00 000 000000 0123333332
Q ss_pred -CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q 008700 386 -WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 459 (557)
Q Consensus 386 -fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~ 459 (557)
|+. ..|+..++||++++||++++.|+++|++|+++|+|++.+++ .|.+.+.++..+++++|+++|++++
T Consensus 239 v~~p~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~ 313 (396)
T 4dd5_A 239 AFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGV-----DPKIMGYGPVPATKKALEAANMTIE 313 (396)
T ss_dssp SSSTTCSCBTTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGG
T ss_pred ccCCCCCeecCCCCCcCcceeEEEEeeHHHHHHCCCCceEEEEEEEEecC-----CCCcccHHHHHHHHHHHHHcCCCHH
Confidence 332 24677789999999999999999999999999999998875 3455566789999999999999999
Q ss_pred CccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 460 DVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 460 dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
||||||+|++++ +|..++.+.|+-. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 314 dId~ve~~d~f~-----~~~~~~~~~lg~~~~~~n~~gg~~~~GH~~gasG~~~~~~~~~~L~~~ 373 (396)
T 4dd5_A 314 DIDLVEANEAFA-----AQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR 373 (396)
T ss_dssp GCSEEEECCSBH-----HHHHHHHHHHTCCTTSBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCEEEecChHH-----HHHHHHHHHhCCCCCccCCCCchhhccCcHHHHHHHHHHHHHHHHHhc
Confidence 999999997643 5777778888743 4688999999999999999999999999999975
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=284.07 Aligned_cols=247 Identities=17% Similarity=0.227 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..+|+++++++||+|||++++++| +|++|+..++.. ..+.++.+++..+
T Consensus 55 ~~~La~~Aa~~AL~dAGl~~~~Id-------~vi~g~~~~~~~------------------------~~~~~a~~va~~l 103 (442)
T 2wu9_A 55 PDDLLAPVLRALIEKTNLNPSEVG-------DIVVGTVLAPGS------------------------QRASECRMAAFYA 103 (442)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------CEEEECCSSBHH------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeecCccC------------------------CCChHHHHHHHHc
Confidence 367999999999999999988666 699998654321 1235678999999
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh----------HH-HHH-----Hhh------
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG----------LG-GFV-----ACR------ 370 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~----------~~-~~~-----~~~------ 370 (557)
|+ ++|+++|+++|+|++.||+.|+++|++|++|++||+|+|.+..... +. .+. .++
T Consensus 104 Gl~~~~p~~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~~ 183 (442)
T 2wu9_A 104 GFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENV 183 (442)
T ss_dssp TCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHHH
T ss_pred CCCCCceEEEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHHH
Confidence 99 7999999999999999999999999999999999999998654110 00 100 010
Q ss_pred -----------------------------hhhccC-------------------CCCCC------------CCCC-CcCC
Q 008700 371 -----------------------------ALSQRN-------------------NDPTK------------ASRP-WDIN 389 (557)
Q Consensus 371 -----------------------------~Ls~~~-------------------~~p~~------------~~rp-fd~~ 389 (557)
.+.... .+.++ .++| |+.
T Consensus 184 ~~~~gisre~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~- 262 (442)
T 2wu9_A 184 AQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK- 262 (442)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT-
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC-
Confidence 111000 00111 3456 764
Q ss_pred CCCce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCcc
Q 008700 390 RDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 462 (557)
Q Consensus 390 ~dG~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId 462 (557)
+|++ ++||++++||++++.|+++|++|+++|+|++.+++. |...+.+...+++++|+++|++++|||
T Consensus 263 -~G~vt~~n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~A~~~Al~~AGl~~~DId 336 (442)
T 2wu9_A 263 -DGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVD-----PAIMGIGPAVAIPAAVKAAGLELDDID 336 (442)
T ss_dssp -TCCCCGGGBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHHHTTCCGGGCC
T ss_pred -CCCeechhcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecCC-----chhcchHHHHHHHHHHHHcCCCHHHCC
Confidence 6777 699999999999999999999999999999998762 334466788999999999999999999
Q ss_pred EEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCC
Q 008700 463 YINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGW 524 (557)
Q Consensus 463 ~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~ 524 (557)
|||+|+++|. .|+.+++ .|+-. .++++++.+..+||++||+|+.++++++++|+++.
T Consensus 337 ~iE~h~aft~----~~l~~~~-~lG~~~~~vN~~GG~~a~GHp~GAsG~~~~~~~v~~Lr~~~ 394 (442)
T 2wu9_A 337 LFEINEAFAS----QFVYCRN-KLGLDPEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRG 394 (442)
T ss_dssp EEEECCSBHH----HHHHHHH-HHTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCChH----HHHHHHH-HhCCCCCCcCCCccHhhcCCchhHHHHHHHHHHHHHHhccC
Confidence 9999999997 5777774 45532 35677788888999999999999999999999863
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=279.07 Aligned_cols=246 Identities=22% Similarity=0.279 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..+|+++++++||+|+|++++++| +|++|+..++.. ..+..+.+++..+
T Consensus 26 ~~~L~~~Aa~~Al~dAgl~~~~id-------~v~~g~~~~~~~------------------------~~~~~a~~va~~l 74 (401)
T 1ulq_A 26 PDDLLAHALSVLVDRSGVPKEEVE-------DVYAGCANQAGE------------------------DNRNVARMALLLA 74 (401)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCCSST------------------------TTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecccCCC------------------------CCChHHHHHHHHh
Confidence 357999999999999999988666 799997643210 1245789999999
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc-hhh--------------H----------HHHH
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI-PIG--------------L----------GGFV 367 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~-p~~--------------~----------~~~~ 367 (557)
|+ ++|+++|+++|+|++.||+.|+++|++|++|++||+|+|.+.. |.. + .++.
T Consensus 75 Gl~~~~p~~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 154 (401)
T 1ulq_A 75 GFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKM 154 (401)
T ss_dssp TCCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHHH
T ss_pred CCCCCccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhcccccccc
Confidence 99 7999999999999999999999999999999999999997654 220 0 1111
Q ss_pred --H-----hhhh---------------------hc----------cC-----------------CCCCC-----------
Q 008700 368 --A-----CRAL---------------------SQ----------RN-----------------NDPTK----------- 381 (557)
Q Consensus 368 --~-----~~~L---------------------s~----------~~-----------------~~p~~----------- 381 (557)
. ++.. ++ .. .++++
T Consensus 155 p~~~~~~~~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~~ 234 (401)
T 1ulq_A 155 QALYGTESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKL 234 (401)
T ss_dssp HHHSCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHH
T ss_pred ccccccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHHH
Confidence 0 1110 00 00 01122
Q ss_pred -CCCC-CcCCCCCce-------ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHH
Q 008700 382 -ASRP-WDINRDGFV-------MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALA 452 (557)
Q Consensus 382 -~~rp-fd~~~dG~v-------~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~ 452 (557)
.+|| ||. +|++ ++|||+++||+++++|+++|++++++|+|++.+++.. .+.+.+...+++++|+
T Consensus 235 ~~~rpif~~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p-----~~~~~~~~~a~~~al~ 307 (401)
T 1ulq_A 235 AALRPVFRE--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPP-----RIMGIGPVPATRKALE 307 (401)
T ss_dssp HHSCBSSST--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCG-----GGGGGTHHHHHHHHHH
T ss_pred hhCCCccCC--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecCCc-----cccchhHHHHHHHHHH
Confidence 2456 764 6777 7999999999999999999999999999999987642 2335567899999999
Q ss_pred HcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcC---CCCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 453 HSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ---NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 453 ~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~---~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
++|++++||||||+|++++. .|+..++. |+- ..++++++.+..+||++||+|+.++++++++|+++
T Consensus 308 ~Agl~~~dId~ie~heafa~----~~l~~~~~-lg~~~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~ 376 (401)
T 1ulq_A 308 RAGLSFSDLGLIELNEAFAA----QALAVLRE-WSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR 376 (401)
T ss_dssp HTTCCGGGCSEEEECCSBHH----HHHHHHHH-HTCCTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHcCEEEEecchHH----HHHHHHHH-cCCCCCCCccCCCCcccccCCCcchHHHHHHHHHHHHHhhc
Confidence 99999999999999998886 56666644 552 24678888999999999999999999999999986
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=273.31 Aligned_cols=247 Identities=20% Similarity=0.307 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+++++++||+|+|+++++|| +|++|+.... ......+.+++..+
T Consensus 29 ~~~L~~~A~~~Al~~agl~~~~Id-------~v~~g~~~~~-------------------------~~~~~~a~~i~~~l 76 (394)
T 3ss6_A 29 PVELAVPVLQEAVKRGGVEPHEVD-------EVILGHCIQR-------------------------TDEANTARTAALAA 76 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-------EEEEECSSCC-------------------------GGGCSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHhHCC-------EEEEEEccCC-------------------------CccchHHHHHHHHc
Confidence 457999999999999999998887 7999975421 12234678899999
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhH-----------------------------
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGL----------------------------- 363 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~----------------------------- 363 (557)
|+ ++|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+......
T Consensus 77 Gl~~~~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T 3ss6_A 77 GFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHH 156 (394)
T ss_dssp TCCTTCEEEEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTTC
T ss_pred CCCCCceEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCccccccccccccccccc
Confidence 99 58999999999999999999999999999999999999986542110
Q ss_pred --HHHH----------------------Hhh--------hhhcc-------------CCCCCCCCCC-------------
Q 008700 364 --GGFV----------------------ACR--------ALSQR-------------NNDPTKASRP------------- 385 (557)
Q Consensus 364 --~~~~----------------------~~~--------~Ls~~-------------~~~p~~~~rp------------- 385 (557)
++.. ..+ .+.+. ..+|++.+|+
T Consensus 157 ~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~pv 236 (394)
T 3ss6_A 157 IMMGETAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPA 236 (394)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCBS
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCCc
Confidence 0000 000 00000 1235555654
Q ss_pred CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCC
Q 008700 386 WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 460 (557)
Q Consensus 386 fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~d 460 (557)
|+. ..|+..++||++++||++++.|+++|++++++|+|++.++. .|.+.+.++..+++++|+++|++++|
T Consensus 237 f~~~g~~t~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~d 311 (394)
T 3ss6_A 237 FRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGV-----DPKIMGIGPAPAIRKGLEKVDWSLED 311 (394)
T ss_dssp SSTTCCCBSTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGG
T ss_pred cCCCCceecCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEecC-----CCccchHHHHHHHHHHHHHcCCCHHH
Confidence 553 25777889999999999999999999999999999999753 34455667889999999999999999
Q ss_pred ccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 461 VNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 461 Id~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
|||||+|+++ .+|..++.+.|+-. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 312 Id~ve~~d~f-----a~~~~~~~~~lg~~~~~v~~~gg~~~~GH~~gasG~~~~~~~~~~L~~~ 370 (394)
T 3ss6_A 312 ADLLEINEAF-----AAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGARITVSLIHELKRR 370 (394)
T ss_dssp CSEEEECCSB-----HHHHHHHHHHHTCCGGGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEeCCch-----HHHHHHHHHHhCCCCCCCCCCcchHhhCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999763 36888888888844 4688999999999999999999999999999874
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=268.31 Aligned_cols=247 Identities=22% Similarity=0.320 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+++++++||+|+|+++++|| +|++|+.... ......+.+++..+
T Consensus 29 ~~~L~~~a~~~Al~~agi~~~~Id-------~v~~g~~~~~-------------------------~~~~~~a~~~~~~l 76 (395)
T 4e1l_A 29 AVQLGTIAVKEAISRVGLNLSEID-------EVIIGNVLQT-------------------------GLGQNVARQIAINA 76 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCC-------EEEEECCCCS-------------------------STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccCC-------------------------CCcchHHHHHHHHc
Confidence 457999999999999999998887 7999975321 12234678999999
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHH----------------------------
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLG---------------------------- 364 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~---------------------------- 364 (557)
|+ ++|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.+.......
T Consensus 77 Gl~~~~p~~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (395)
T 4e1l_A 77 GIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFN 156 (395)
T ss_dssp TCCTTSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEETT
T ss_pred CCCCCceEEEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhcccccccccc
Confidence 99 689999999999999999999999999999999999999876532210
Q ss_pred ----HHHH----------------------hh--------hhhcc--------------CCCCCCCCCC-----------
Q 008700 365 ----GFVA----------------------CR--------ALSQR--------------NNDPTKASRP----------- 385 (557)
Q Consensus 365 ----~~~~----------------------~~--------~Ls~~--------------~~~p~~~~rp----------- 385 (557)
+... .+ .+... ..+|++.+|+
T Consensus 157 ~~~~g~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~~ 236 (395)
T 4e1l_A 157 QYHMGITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLK 236 (395)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHCC
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhCC
Confidence 0000 00 00000 0123444443
Q ss_pred --CcC-----CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 008700 386 --WDI-----NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 458 (557)
Q Consensus 386 --fd~-----~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~ 458 (557)
|+. ..|+..++||++++||++++.|+++|++++++|.|++.+++ .|.+.+.++..+++++|+++|+++
T Consensus 237 ~v~~~~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~ai~~al~~agl~~ 311 (395)
T 4e1l_A 237 PAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGV-----EPEVMGTGPIPATRKALKKAGLSI 311 (395)
T ss_dssp BSSSTTCSCBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGTTCTHHHHHHHHHHHTTCCG
T ss_pred CccCCCCCeeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccC-----CCCcchHHHHHHHHHHHHHcCCCH
Confidence 432 24677789999999999999999999999999999999865 233445567899999999999999
Q ss_pred CCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 459 ~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+||||||+|+.+ ..|..++.+.|+-. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 312 ~dId~ve~~d~f-----a~~~~~~~~~lg~~~~~v~~~gg~~~~Gh~~gasG~~~~~~~~~~L~~~ 372 (395)
T 4e1l_A 312 NDIDLIEANEAF-----AAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARILVTLIYEMQKR 372 (395)
T ss_dssp GGCSEEEECCSB-----HHHHHHHHHHHTCCGGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH
T ss_pred HHcCEEEecChh-----HHHHHHHHHHhCCCCCCCCcCCchhhcCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999998653 36778888888743 4688999999999999999999999999999875
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=260.25 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHH-CCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 235 FMLYLLTAGKKALAD-GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 235 ~~rl~l~aa~eALed-AGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
.+.|+++++++||+| +|+++++|| +|++|+..... .....++.+++..
T Consensus 32 ~~~L~~~A~~~AL~~~AGl~~~dId-------~vi~g~~~~~~------------------------~~~~~~a~~va~~ 80 (407)
T 3svk_A 32 PLNLVVGLVDELRRRYPDLDETLIS-------DMILGVVSPVG------------------------DQGGDIARTAVLA 80 (407)
T ss_dssp HHHHHHHHHHHHHHHSTTCCGGGEE-------EEEEECC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcCHHHCC-------EEEEEecCccc------------------------cccCcHHHHHHHH
Confidence 467999999999999 999999887 79998753110 0123467899999
Q ss_pred hCC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhh--------------------HHHH-----
Q 008700 314 LGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG--------------------LGGF----- 366 (557)
Q Consensus 314 lgl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~--------------------~~~~----- 366 (557)
+|+ .+|+++|+++|+|++.||+.|+++|++|++|++||+|+|.+..... ..++
T Consensus 81 lGlp~~~pa~~v~~~Css~~~Al~~A~~~I~sG~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~Ae~~ 160 (407)
T 3svk_A 81 AGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVPMGSDGGAWATDPETNYRIGFVPQGIGADLI 160 (407)
T ss_dssp TTCCTTCEEEEEC---CBSCCHHHHHHHHHHHTSCCEEEEEEEECC-----------CCCCTTTCCCCCCHHHHHHHHHH
T ss_pred cCCCCCCceEEecCcChhHHHHHHHHHHHHHcCCCCEEEEEEEcccccCcccccccccccCchhhccccccCHHHHHHHH
Confidence 999 6899999999999999999999999999999999999998764210 0000
Q ss_pred -----------HHh--------------hhhhcc-----------CCCCCCCCCC-------------CcCC--------
Q 008700 367 -----------VAC--------------RALSQR-----------NNDPTKASRP-------------WDIN-------- 389 (557)
Q Consensus 367 -----------~~~--------------~~Ls~~-----------~~~p~~~~rp-------------fd~~-------- 389 (557)
... +.+... ..+|+...|+ |+..
T Consensus 161 a~~~~i~re~~d~~a~~s~~~A~~A~~~g~~~~ei~pv~~~~g~~~~~pd~~~r~~~t~e~l~~~~~vf~~~g~v~~~~~ 240 (407)
T 3svk_A 161 ATLEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEMGGFDD 240 (407)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEECTTSCEEECSCTTCCTTCCHHHHHTSCBSCC----------
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeecCCCceeeCCccccCCCCCHHHHhhCCCeecCCCccccccc
Confidence 000 000000 0234454443 4422
Q ss_pred ------------------CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHH
Q 008700 390 ------------------RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKAL 451 (557)
Q Consensus 390 ------------------~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL 451 (557)
.|+..++||++++||++++.|+++|++++++|.|++.+++... ....+...+++++|
T Consensus 241 ~~~~~~~~~~~i~~~~t~~~~s~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p~-----~~~~~~~~a~~~al 315 (407)
T 3svk_A 241 VALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATATSGSDPV-----IMLTGPTPATRKVL 315 (407)
T ss_dssp ---CTTTTCSSCCCCCBTTTBCCBEEEEEEEEEECHHHHHHTTCCCCEEEEEEEEC-----------CCCTHHHHHHHHH
T ss_pred cccccccccccccccccccccCcccCceeEEEEeeHHHHHHcCCCCcEEEEEEEEeccCCc-----cccHHHHHHHHHHH
Confidence 4666799999999999999999999999999999999876432 22345678999999
Q ss_pred HHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 452 AHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 452 ~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+++|++++||||||+|++++. .|...+ +.++-. .++++++.|..+||++||+|+.++++++++|+++
T Consensus 316 ~~Agl~~~dId~~e~hdaf~~----~~l~~~-~~lg~~~~~vn~~Gg~~~~GHp~gasG~~~~~~~~~~L~~~ 383 (407)
T 3svk_A 316 DRAGLTIDDIDLFELNEAFAS----VVLKFQ-KDLNIPDEKLNVNGGAIAMGHPLGATGAMITGTMVDELERR 383 (407)
T ss_dssp HHHTCCGGGCSEEEECCSBHH----HHHHHH-HHHTCCGGGBSTTCCHHHHCBCGGGHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHCCEEEEeChhHH----HHHHHH-HHhCCCCCCCCCCCcHhheeCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887 344333 445532 4678899999999999999999999999999874
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=249.26 Aligned_cols=270 Identities=16% Similarity=0.189 Sum_probs=193.7
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhh-ccCCHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLTAG 243 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~-~~md~~~rl~l~aa 243 (557)
++.|+|+|+.+|.. .+.+++++.+. .+ +.|.. .. .. |..+.. ...++..+|+++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~i~-----~~----~G------i~~r~~~~~~~~~~~l~~~a~ 59 (317)
T 1hnj_A 2 YTKIIGTGSYLPEQVRTNADLEKMVD--TS-----DEWIV-----TR----TG------IRERHIAAPNETVSTMGFEAA 59 (317)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHTTSS--CC-----HHHHH-----HH----HC------CCEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEEEEeCCCceecHHHHHHHhC--CC-----HHHHH-----HH----hC------ceEEEecCCCCCHHHHHHHHH
Confidence 47899999999997 56777764321 10 00000 00 00 222221 23467889999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-CCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~-Gp~~t 322 (557)
++||+|+|+++++++ +|++|+.... ...+..+.+++..+|++ +|+++
T Consensus 60 ~~al~~ag~~~~~id-------~vi~g~~~~~-------------------------~~~~~~a~~v~~~lgl~~~~~~~ 107 (317)
T 1hnj_A 60 TRAIEMAGIEKDQIG-------LIVVATTSAT-------------------------HAFPSAACQIQSMLGIKGCPAFD 107 (317)
T ss_dssp HHHHHHHTCCGGGCC-------EEEEECSCCS-------------------------CSSSCHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHcCCCHHHCC-------EEEEEcCCCC-------------------------CCCCcHHHHHHHHhCCCCCeEEe
Confidence 999999999987666 7899876421 11234788999999997 89999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+++|+|++.||+.|+++|++|++|.+||+|+|.+... +. |+...+|+++||||+++
T Consensus 108 v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~-----------~~------------~~d~~~~~~~GdGA~A~ 164 (317)
T 1hnj_A 108 VAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLART-----------CD------------PTDRGTIIIFGDGAGAA 164 (317)
T ss_dssp ECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHHHH-----------SC------------TTCHHHHTTBCCEEEEE
T ss_pred eCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhccc-----------CC------------chhcccceeeccccEEE
Confidence 99999999999999999999999999999999973211 00 22233589999999999
Q ss_pred EEcchHHHHhcCCeeeEEEEEE-EEecCCCCCCCC-----------CCChH--------HHHHHHHHHHHHcCCCCCCcc
Q 008700 403 LLEELEHAKKRGAKIYAEFRGG-SFTSDAYHMTEP-----------HPDGV--------GVILCIEKALAHSGVSREDVN 462 (557)
Q Consensus 403 vLe~~~~A~~~G~~i~a~I~G~-~~~~d~~~~~~~-----------~p~~~--------~~~~ai~~aL~~Agl~~~dId 462 (557)
||++.+. ..|++.+.+. +...+..+...+ .+++. .+.++|+++|+++|++++|||
T Consensus 165 vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~~agl~~~did 239 (317)
T 1hnj_A 165 VLAASEE-----PGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLD 239 (317)
T ss_dssp EEEEESS-----CSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred EEEecCC-----CceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 9998653 3577776542 222222222111 13344 678899999999999999999
Q ss_pred EEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCC
Q 008700 463 YINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIH 526 (557)
Q Consensus 463 ~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lp 526 (557)
||++|+++++..| ++.+.|+... -.+.+.|.++||+.+|++.+.|..+ ++++.+.
T Consensus 240 ~v~~H~~~~~~~d-----~i~~~lg~~~-~~~~~~~~~~Gn~~~As~~~~L~~~---~~~~~~~ 294 (317)
T 1hnj_A 240 WLVPHQANLRIIS-----ATAKKLGMSM-DNVVVTLDRHGNTSAASVPCALDEA---VRDGRIK 294 (317)
T ss_dssp EEEECCSCHHHHH-----HHHHHTTCCG-GGBCCCHHHHCBCGGGHHHHHHHHH---HHTTCSC
T ss_pred EEEEcCCCHHHHH-----HHHHHcCCCH-HHhHhhHhhhCcHHHHHHHHHHHHH---HHhCCCC
Confidence 9999999999866 4667777532 2355789999999999999888665 4555553
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=245.49 Aligned_cols=266 Identities=15% Similarity=0.221 Sum_probs=190.8
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++.|+|+|+.+|.. .+.+++++.+. .+ +.|-. ... . |..+.....++..+|++++++
T Consensus 2 ~~~I~~~g~~~P~~~~~~~~~~~~~~--~~-----~~~i~-----~~~----G------i~~r~~~~~~~~~~l~~~a~~ 59 (309)
T 2ebd_A 2 GTKIIGTGVYLPKNVLTNFDLEKIVD--TS-----DEWIT-----TRT----G------IKERRIAKEETITYMATQAAK 59 (309)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHTTSS--CC-----HHHHH-----HHH----C------CCEEEECSSCCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCceEcHHHHHHHcC--CC-----HHHHH-----HHh----C------ceeeeecCCCCHHHHHHHHHH
Confidence 48999999999988 56677664321 10 00000 000 0 111111111568899999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-Ceeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG-PNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G-p~~tv 323 (557)
+||+|+|++++++| +|++|+..+.. ..+..+.+++..+|+++ |+++|
T Consensus 60 ~al~~ag~~~~~id-------~v~~~~~~~~~-------------------------~~~~~a~~v~~~lgl~~~~~~~v 107 (309)
T 2ebd_A 60 EALREANLSPEELD-------LIILATLTPQK-------------------------RFPSTACLVQAQLKAKGVYAFDI 107 (309)
T ss_dssp HHHHHHTCCGGGCS-------EEEEECSSCSS-------------------------SSSCHHHHHHHHHTCTTCEEEEE
T ss_pred HHHHHcCCCHHHCC-------EEEEEcCCCCC-------------------------CCCcHHHHHHHHhCCCCceEEec
Confidence 99999999988666 79999864211 11236889999999998 99999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||+.|+++|++|++|.+||+|+|.+... + . |+...+|+++||||+++|
T Consensus 108 ~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~-----------~-----------~-~~~~~~~~~~gdGaaA~v 164 (309)
T 2ebd_A 108 SAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEA-----------V-----------D-WEDRSTCVLFGDGAGAVV 164 (309)
T ss_dssp ECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGT-----------C-----------C-TTCTTTTTTBCEEEEEEE
T ss_pred CccchHHHHHHHHHHHHHHCCCCCEEEEEEecccccc-----------c-----------C-ccchhhccccccccEEEE
Confidence 9999999999999999999999999999999984311 0 1 234567999999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCC---CCCCC-----CCChH--------HHHHHHHHHHHHcCCCCCCccEEEEc
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEP-----HPDGV--------GVILCIEKALAHSGVSREDVNYINAH 467 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~---~~~~~-----~p~~~--------~~~~ai~~aL~~Agl~~~dId~ve~h 467 (557)
|++.+.+ ..+++.+ ..+++. +...| .+++. .+.++++++|+++|++++|||||++|
T Consensus 165 L~~~~~~----~~i~~~~----~~~~g~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~H 236 (309)
T 2ebd_A 165 VTRSEDK----SDILATR----MYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPH 236 (309)
T ss_dssp EEECSSS----CEEEEEE----EEECGGGGGGEEECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEC
T ss_pred EEecCCC----CceeEEE----EEecCCccceeEeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEc
Confidence 9987653 2355443 333432 22222 23443 67889999999999999999999999
Q ss_pred CCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 468 ATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 468 gtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+++++..| ++.+.|+-.. -.+.+.|.++||+.+|++++.|.+++ +++.+
T Consensus 237 ~~~~~~~~-----~~~~~lg~~~-~~~~~~~~~~Gh~~~As~~~~L~~~~---~~g~~ 285 (309)
T 2ebd_A 237 QANVRIIN-----ALAEKLNIPK-EKVFVNIQKYGNTSAASIPIALHEAI---KEGKV 285 (309)
T ss_dssp CSCHHHHH-----HHHHHTTCCG-GGBCCCHHHHCBCGGGHHHHHHHHHH---HTTCC
T ss_pred CCCHHHHH-----HHHHHhCCCH-HHhhhhHhhhcchHHHHHHHHHHHHH---HcCCC
Confidence 99998755 4567777432 12346789999999999999998764 44544
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-28 Score=247.16 Aligned_cols=270 Identities=16% Similarity=0.159 Sum_probs=190.9
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhh-ccCCHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLTAGK 244 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~-~~md~~~rl~l~aa~ 244 (557)
+.|+|+|..+|.. .+.+++++.+.. + +.|-. .. .. |..+.. ...++..+|++++++
T Consensus 2 ~~I~~~g~~~P~~~~~~~~~~~~~~~--~-----~~~i~-----~~----~G------i~~r~~~~~~~~~~~la~~a~~ 59 (322)
T 1ub7_A 2 SGILALGAYVPERVMTNADFEAYLDT--S-----DEWIV-----TR----TG------IKERRVAAEDEYTSDLAFKAVE 59 (322)
T ss_dssp CEEEEEEEECCSEEEEHHHHHTTSSC--C-----HHHHH-----HH----TC------CCEEEECCTTCCHHHHHHHHHH
T ss_pred cEEEEEEEECCCceecHHHHHHHhCC--C-----HHHHH-----Hh----cC------ceEEeecCCCCCHHHHHHHHHH
Confidence 4799999999987 667777643211 0 00000 00 00 111111 123457899999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCCCeeeec
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIS 324 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv~ 324 (557)
+||+|+|+++++++ +|++|+.... ...+..+.+++..+|+++|+++|+
T Consensus 60 ~al~~ag~~~~~id-------~vi~~~~~~~-------------------------~~~~~~a~~v~~~lgl~~~~~~v~ 107 (322)
T 1ub7_A 60 DLLRRHPGALEGVD-------AVIVATNTPD-------------------------ALFPDTAALVQARFGLKAFAYDLL 107 (322)
T ss_dssp HHHHHSTTTTTTEE-------EEEEECSSCS-------------------------EEESCHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHcCCCHHHCC-------EEEEEcCCCC-------------------------CCCCcHHHHHHHHhCCCCEEEeeC
Confidence 99999999987665 6888876421 111236789999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEEE
Q 008700 325 TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLLL 404 (557)
Q Consensus 325 ~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalvL 404 (557)
++|+|++.||..|+++|++|++|.+||+|+|.+ ++. ..|+| .++|+++||||+++||
T Consensus 108 ~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~-s~~---------------------~~~~d-~~~~~~~GdGA~A~vL 164 (322)
T 1ub7_A 108 AGCPGWIYALAQAHALVEAGLAQKVLAVGAEAL-SKI---------------------IDWND-RATAVLFGDGGGAAVV 164 (322)
T ss_dssp CSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGT---------------------SCTTC-HHHHTTBCCEEEEEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCCCEEEEEEechh-ccc---------------------cChhh-cccceeeccccEEEEE
Confidence 999999999999999999999999999999984 221 01333 5678999999999999
Q ss_pred cchHHHHhcCCeeeEEE-EEEEEecCCCCCC-----CCCC---------Ch--------HHHHHHHHHHHHHcCCCCCCc
Q 008700 405 EELEHAKKRGAKIYAEF-RGGSFTSDAYHMT-----EPHP---------DG--------VGVILCIEKALAHSGVSREDV 461 (557)
Q Consensus 405 e~~~~A~~~G~~i~a~I-~G~~~~~d~~~~~-----~~~p---------~~--------~~~~~ai~~aL~~Agl~~~dI 461 (557)
++.+. +..+++.+ .+.+...+..+.. .|.+ ++ ..+.++++++|+++|++++||
T Consensus 165 ~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~di 240 (322)
T 1ub7_A 165 GKVRE----GYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKAGLTPEDI 240 (322)
T ss_dssp ECCCT----TCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred EecCC----CCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 98653 34566654 2222222221111 0221 23 578889999999999999999
Q ss_pred cEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCC
Q 008700 462 NYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIH 526 (557)
Q Consensus 462 d~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lp 526 (557)
|||++|+++++..| ++.+.|+... -.+.+.|.++||+.+|++.+.+.+ +++++.+.
T Consensus 241 d~~~~H~~~~~~~d-----~~~~~lg~~~-~~~~~~~~~~Gh~~~As~~~~l~~---~l~~g~~~ 296 (322)
T 1ub7_A 241 RLFVPHQANLRIID-----AARERLGLPW-ERVAVNVDRYGNTSTASIPLALKE---AVDAGRIR 296 (322)
T ss_dssp SEEEECCSCHHHHH-----HHHHTTTCCG-GGBCCCHHHHCBCGGGHHHHHHHH---HHHHTSSC
T ss_pred CEEEEcCCCHHHHH-----HHHHHcCCCH-HHHHHHHHhhCcHHHHHHHHHHHH---HHHhCCCC
Confidence 99999999999766 3566676432 124467899999999999997765 45667664
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=256.94 Aligned_cols=286 Identities=15% Similarity=0.079 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+++++||+|||++++++++. -.|++++...... .............+..++..+|
T Consensus 43 ~dL~a~Ai~~AL~dAGl~p~~Vd~v---I~g~~~~~~~~~~-----------------~~~~~~~g~~~~~~~~va~~lG 102 (520)
T 4egv_A 43 VELATEAAKAALHDCGADADTVARA---IDTVAGTRQFEIS-----------------GPASAPLGVSSNYPRSVARNIG 102 (520)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHH---CCEEEECCC-------------------------------CCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcCHHHcceE---EEEEeeccccccc-----------------chhhhhhccccCHHHHHHHHcC
Confidence 3488999999999999999877742 1244433221000 0011122334456788999999
Q ss_pred CCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHH-----------------------------
Q 008700 316 WMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGG----------------------------- 365 (557)
Q Consensus 316 l~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~----------------------------- 365 (557)
+.+ +.++++.+|+|++.+|+.|++.|++|++|++|+||+|+|.+...+..
T Consensus 103 l~~~~~~~~~~~caSg~~av~~AA~aI~aG~advvlAgG~EsMS~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 182 (520)
T 4egv_A 103 ADPAHAVLEVIGGQSPQHLATEFGGKIAAGENDVVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGIFDEY 182 (520)
T ss_dssp CCCSEEEECCSSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECCC----------------------------------CT
T ss_pred CCCceEEEecCCCHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccccccccccccCccccccccccccccccchhHHHH
Confidence 976 77889999999999999999999999999999999999854321100
Q ss_pred ---------------HHHh----------------hhhhc-----cCCCCCCCC--------------------CCCcCC
Q 008700 366 ---------------FVAC----------------RALSQ-----RNNDPTKAS--------------------RPWDIN 389 (557)
Q Consensus 366 ---------------~~~~----------------~~Ls~-----~~~~p~~~~--------------------rpfd~~ 389 (557)
+... ..+.. ...+|+... .|+..-
T Consensus 183 ~~~~g~~~~~~~~~~~~s~~~a~~g~~~~~f~~eia~v~v~~~~~a~~np~a~~r~~~t~E~l~~l~p~~r~i~~p~~ta 262 (520)
T 4egv_A 183 TIRHGLIGAPVQYGLLENARRARLGLSVADYRLAMAELFAPFSKVAAKNPYSSAPTERSVEELLTVTASNRMIVDPYPRL 262 (520)
T ss_dssp TGGGTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCTTSSSCCCCCHHHHHSCCSSSCEEETTEEGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHccccchhhhheeEEEEecccccccCccccccCCCCHHHhcccCcccccccCCcccc
Confidence 0000 00000 000111111 122222
Q ss_pred CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCC--CCCC-CChHHHHHHHHHHHHHcCCCCCCccEEEE
Q 008700 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHM--TEPH-PDGVGVILCIEKALAHSGVSREDVNYINA 466 (557)
Q Consensus 390 ~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~--~~~~-p~~~~~~~ai~~aL~~Agl~~~dId~ve~ 466 (557)
.|+..++|||+++||++++.|++.|.++++.|.+++........ ..+. ....++..+++++|+++|++++|||++|+
T Consensus 263 ~nas~isDGAAAvVL~S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~did~~E~ 342 (520)
T 4egv_A 263 MVARDQVNQGAALLMMSVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDDVAAFDL 342 (520)
T ss_dssp GCC--CCCEEEEEEEEEHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred cccCCCCcceEEEEEeeHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEE
Confidence 35667899999999999999999999999888887765432221 1121 12568889999999999999999999999
Q ss_pred cCCCCccCcHHHHHHHHHHhcC----CCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q 008700 467 HATSTPAGDIKEYQALIHCFGQ----NRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDS 542 (557)
Q Consensus 467 hgtgt~~~D~~E~~Al~~~~~~----~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~ 542 (557)
|..++. +..+..+.+|- ..++++++.+.++||+++|+|+..+++++++|+++..+..++ .+++.++|..
T Consensus 343 ~dAF~~-----~~l~~~~~lG~~~~~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~~v~~lr~~~~~~~L~--~~~gg~~~~~ 415 (520)
T 4egv_A 343 YSCFPF-----PVFNICDGTGLATDDPRGLTLTGGLPFFGGLGNNYSMHGIAEAVNEMRDKPGQFALV--GANGGIASKY 415 (520)
T ss_dssp CCSSSH-----HHHHHHHHHCCCTTCTTCSCSSCCHHHHCSCSSSHHHHHHHHHHHHHHHSTTCEEEE--EEEETTTTEE
T ss_pred eCCcHH-----HHHHHHHHhCCCCCCCCCcCCCcccccCCChHHHHHHHHHHHHHHHHhcCCCCceEE--eCCCCeeeee
Confidence 987665 34444455652 246889999999999999999999999999999998777665 5888899888
Q ss_pred CccccC
Q 008700 543 GHECAC 548 (557)
Q Consensus 543 ~~~~~~ 548 (557)
+.+.+.
T Consensus 416 ~~~~l~ 421 (520)
T 4egv_A 416 SVGIYS 421 (520)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 776665
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=242.12 Aligned_cols=272 Identities=18% Similarity=0.211 Sum_probs=189.8
Q ss_pred CCcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhh-ccCCHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLS-KRMDKFMLYLLT 241 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~-~~md~~~rl~l~ 241 (557)
+.++.|+|+|+.+|.. .+.+++|+.+... +.|.. .. .. |..+.. ...++..+|+++
T Consensus 9 ~~~~~I~gig~~~P~~~~~~~~~~~~~~~~-------~~~i~-----~~----~G------i~~R~~~~~~~~~~~la~~ 66 (339)
T 1mzj_A 9 RRFSRVLGVGSYRPRREVSNKEVCTWIDST-------EEWIE-----TR----TG------IRSRRIAEPDETIQVMGVA 66 (339)
T ss_dssp CCEEEEEEEEEECCSCEEEHHHHTTTSSCC-------HHHHH-----HH----HC------CSEEECCCTTCCHHHHHHH
T ss_pred cCceEEEEEEEeCCCccccHHHHHHHhCCC-------HHHHH-----Hh----cC------ceEEEEeCCCCCHHHHHHH
Confidence 4579999999999998 6677777543210 00000 00 00 112211 124568899999
Q ss_pred HHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-CCe
Q 008700 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPN 320 (557)
Q Consensus 242 aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~-Gp~ 320 (557)
++++||+|+|+++++++ +|++|+..+.. .....+.+++..+|++ +|+
T Consensus 67 Aa~~al~~ag~~~~~id-------~vi~gt~~~~~-------------------------~~p~~a~~v~~~lgl~~~~~ 114 (339)
T 1mzj_A 67 ASRRALEHAGVDPAEID-------LVVVSTMTNFV-------------------------HTPPLSVAIAHELGADNAGG 114 (339)
T ss_dssp HHHHHHHHHTCCGGGCC-------EEEEECSCCCC-------------------------CSSCHHHHHHHHHTCTTCEE
T ss_pred HHHHHHHHcCCCHHHCC-------EEEEEecCCCC-------------------------CCChHHHHHHHHhCCCCccE
Confidence 99999999999988666 78999864321 1122678999999998 799
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceE
Q 008700 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
++|+++|+|++.||+.|+++|++|++|.+||+|+|.+. +. +. ++...+|+++||||+
T Consensus 115 ~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~----------~~------------~~d~~~~~~~GdGA~ 171 (339)
T 1mzj_A 115 FDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMT-DV----------ID------------LADRSLSFLFGDGAG 171 (339)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEGG-GG----------SC------------SSCTTTTTTBCEEEE
T ss_pred EEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEcccc-cc----------cC------------ccccccceEeccCce
Confidence 99999999999999999999999999999999999842 31 11 123467999999999
Q ss_pred EEEEcchHHHHhcCCeeeEEE-EEEEEecCCCCCC--CCC-------------CCh--------HHHHHHHHHHHHHcCC
Q 008700 401 VLLLEELEHAKKRGAKIYAEF-RGGSFTSDAYHMT--EPH-------------PDG--------VGVILCIEKALAHSGV 456 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I-~G~~~~~d~~~~~--~~~-------------p~~--------~~~~~ai~~aL~~Agl 456 (557)
++||++.+. ..+++.. .+.+...+..+.. .|. .++ ..+.++|+++|+++|+
T Consensus 172 A~vL~~~~~-----~~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~agl 246 (339)
T 1mzj_A 172 AAVVGPSDV-----PGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREALEVAGL 246 (339)
T ss_dssp EEEEEEESS-----CCBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEEecCC-----CCeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999997643 3455432 2222212211111 011 122 5678899999999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+++|||||++|+++++.+|. +.+.++-...-.+.....++||+.+|++.+.|.++ ++++.+
T Consensus 247 ~~~did~v~~H~~~~~~~d~-----i~~~lg~~~~~~~~~~~~~~Gn~~sAs~~~~L~~~---~~~g~~ 307 (339)
T 1mzj_A 247 TVGDLVAFVPHQANLRIIDV-----LVDRLGVPEHVVVSRDAEDTGNTSSASVALALDRL---VRSGAV 307 (339)
T ss_dssp CGGGCSEEEECCSCHHHHHH-----HHHHHTCCTTSEECCTHHHHCBCTTHHHHHHHHHH---HHHTSS
T ss_pred CHHHCCEEEECCCCHHHHHH-----HHHHhCCCccceeeehhhhcCchHHHHHHHHHHHH---HHcCCC
Confidence 99999999999999998874 55667643220122335689999999999887665 455554
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=237.39 Aligned_cols=225 Identities=16% Similarity=0.226 Sum_probs=166.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 233 d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
.+..+|+++++++||+|+|++++++| +|++|+..++. . ....+.+++.
T Consensus 49 ~~~~~l~~~a~~~al~~ag~~~~~id-------~vi~~~~~~~~--------------------~-----~~~~a~~v~~ 96 (313)
T 1zow_A 49 QDTSDLAYEASVKAIADAGIQPEDID-------MIIVATATGDM--------------------P-----FPTVANMLQE 96 (313)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSSCSC--------------------S-----SSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEcCCCCC--------------------C-----CCcHHHHHHH
Confidence 35789999999999999999988666 78999764211 1 1235789999
Q ss_pred hhCCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCC
Q 008700 313 DLGWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (557)
Q Consensus 313 ~lgl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~d 391 (557)
.+|++ +|+++|+++|+|++.||..|+++|++|++|.+||+|+|.+... .+|+|. .+
T Consensus 97 ~lgl~~~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~----------------------~~~~d~-~~ 153 (313)
T 1zow_A 97 RLGTGKVASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKI----------------------TDLTDR-ST 153 (313)
T ss_dssp HHTCCSCCEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEGGGT----------------------CCTTCH-HH
T ss_pred HhCCCCCcEEEECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccccc----------------------cCcccc-cc
Confidence 99997 6999999999999999999999999999999999999984321 123432 36
Q ss_pred CceecCceEEEEEcchHHHHhcCCeeeEE-EEEEEEecCCCCCCCC----CCCh--------HHHHHHHHHHHHHcCCCC
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAE-FRGGSFTSDAYHMTEP----HPDG--------VGVILCIEKALAHSGVSR 458 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~a~-I~G~~~~~d~~~~~~~----~p~~--------~~~~~ai~~aL~~Agl~~ 458 (557)
|+++||||+++||++.+. +..+++. +.+.+...+..+...+ .+++ ..+.++++++|+++|+++
T Consensus 154 ~~~~gdGa~A~vl~~~~~----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~ 229 (313)
T 1zow_A 154 AVLFGDGAGAVIIGEVSE----GRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKANLTS 229 (313)
T ss_dssp HTTBCEEEEEEEEEECST----TCEEEEEEEEECGGGGGGEEECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred eeeeccceEEEEEEecCC----CCceeEEEEEEcCCCcCeEEecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 899999999999998654 3455543 3322222222222111 1223 367889999999999999
Q ss_pred CCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 459 EDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 459 ~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+|||||++|+++++..|. +.+.|+-... .+...|.++||+.+|++.+.|.+++ +++.+
T Consensus 230 ~did~~~~H~~~~~~~d~-----~~~~lg~~~~-~~~~~~~~~Gh~~~as~~~~L~~~~---~~~~~ 287 (313)
T 1zow_A 230 DDIDLFIPHQANIRIMES-----ARERLGISKD-KMSVSVNKYGNTSAASIPLSIDQEL---KNGKL 287 (313)
T ss_dssp GGCSEEEECCSCHHHHHH-----HHHHHTCCGG-GBCCCHHHHCBCGGGHHHHHHHHHH---HTTCC
T ss_pred HHCCEEEEcCCCHHHHHH-----HHHHhCCCHH-HHHHhHhhhCchHHHHHHHHHHHHH---HcCCC
Confidence 999999999999998875 3456663311 1224689999999999999887754 45544
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-25 Score=225.56 Aligned_cols=263 Identities=17% Similarity=0.234 Sum_probs=181.6
Q ss_pred CCcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhc-cCCHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSK-RMDKFMLYLLT 241 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~-~md~~~rl~l~ 241 (557)
+.++.|+|+|+.+|.. .+.+++++.+.. + +.|.. ..+ -|..+... ..++..+|+++
T Consensus 10 m~~~~I~g~g~~~P~~~~~~~~~~~~~~~--~-----~~~i~-----------~~~----gi~~r~~~~~~~~~~~la~~ 67 (335)
T 1u6e_A 10 ARSVGLLSVGAYRPERVVTNDEICQHIDS--S-----DEWIY-----------TRT----GIKTRRFAADDESAASMATE 67 (335)
T ss_dssp CSCEEEEEEEEECCSEEEEHHHHTTSSSC--C-----HHHHH-----------HHH----CCSEEEECCTTCCHHHHHHH
T ss_pred CCceEEEEEEEECCCceecHHHHHHHhCC--C-----HHHHH-----------Hhc----CCceEeecCCCCCHHHHHHH
Confidence 5679999999999997 667777653311 0 01000 000 02222211 24568899999
Q ss_pred HHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-CCe
Q 008700 242 AGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPN 320 (557)
Q Consensus 242 aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~-Gp~ 320 (557)
++++||+|+|++++++| +|++|+..+++ .....+.+++..+|++ +|+
T Consensus 68 A~~~al~~ag~~~~~id-------~vi~~t~~~~~-------------------------~~~~~a~~v~~~lgl~~~~~ 115 (335)
T 1u6e_A 68 ACRRALSNAGLSAADID-------GVIVTTNTHFL-------------------------QTPPAAPMVAASLGAKGILG 115 (335)
T ss_dssp HHHHHHHHHTCCGGGCC-------EEEEECSCCCC-------------------------SSSCHHHHHHHHHTCTTSEE
T ss_pred HHHHHHHHcCCCHHHCC-------EEEEEcCCCCC-------------------------CCChHHHHHHHHhCCCCCcE
Confidence 99999999999988666 79999764321 1124678999999997 699
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceE
Q 008700 321 YSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
++|+++|+|++.||..|+++|++|++|.+||+|+|.+... ..|+| ..+++++||||+
T Consensus 116 ~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~----------------------~~~~d-~~~~~~~gDGA~ 172 (335)
T 1u6e_A 116 FDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLSPT----------------------IDMYD-RGNCFIFADGAA 172 (335)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECGGG----------------------CCTTC-TTTTTTBCEEEE
T ss_pred eeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEcccccc----------------------cCccc-cccceEeccccE
Confidence 9999999999999999999999999999999999985310 12333 347999999999
Q ss_pred EEEEcchHHHHhcCCeeeEEEEEE-EEecCCCCCC--------C-------CCCCh--------HHHHHHHHHHHHHcCC
Q 008700 401 VLLLEELEHAKKRGAKIYAEFRGG-SFTSDAYHMT--------E-------PHPDG--------VGVILCIEKALAHSGV 456 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i~a~I~G~-~~~~d~~~~~--------~-------~~p~~--------~~~~~ai~~aL~~Agl 456 (557)
++||++.+. ++ ++.++.+. +...+..+.. . ...++ ..+.++++++|+++|+
T Consensus 173 A~vl~~~~~---~~--i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl 247 (335)
T 1u6e_A 173 AVVVGETPF---QG--IGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGV 247 (335)
T ss_dssp EEEEEECSS---CC--BCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCC---CC--eeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999998653 22 44444332 1111111000 0 01122 3567899999999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHH
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEA 513 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~l 513 (557)
+++|||||++|+++++..|. +.+.++-...-.+...+..+||+.+|+....|
T Consensus 248 ~~~dId~~~~H~~~~~~~~~-----~~~~lg~~~~~~~~~~~~~~Gnt~sAs~~~~L 299 (335)
T 1u6e_A 248 RPDQIDVFVPHQANSRINEL-----LVKNLQLRPDAVVANDIEHTGNTSAASIPLAM 299 (335)
T ss_dssp CGGGCCEEEECCSCHHHHHH-----HHHHHTCCTTCEECCTHHHHCBCGGGHHHHHH
T ss_pred CHHHCCEEEECCCCHHHHHH-----HHHHcCCCchhhhhhhhhhhCcHHHHHHHHHH
Confidence 99999999999999998765 44556643221223346789999999965433
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=219.78 Aligned_cols=265 Identities=19% Similarity=0.217 Sum_probs=185.8
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++.|+|+|+.+|.. .+.+++++.+......|.+ + .. |..+.....++..+|++++++
T Consensus 5 ~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~-----------~-----~G------i~~R~~~~~~~~~~la~~Aa~ 62 (331)
T 2x3e_A 5 AAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISS-----------R-----TG------VRQRHIAGDLGSGDLALRAAS 62 (331)
T ss_dssp EEEEEEEEEECCSCEEEHHHHHHHTTCCHHHHHH-----------H-----HC------CCEEECCTTCCHHHHHHHHHH
T ss_pred eeEEEEEEEECCCcEecHHHHHHHhCCCHHHHHH-----------h-----hC------ceEEEecCCCCHHHHHHHHHH
Confidence 58999999999998 6778887765211000000 0 00 111111111668899999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-CCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~-Gp~~tv 323 (557)
+||+|+|+ ++++ .|++|+..+. ......+.+++..+|++ +|+++|
T Consensus 63 ~al~~ag~--~~id-------~vi~~t~~~~-------------------------~~~p~~a~~v~~~lgl~~~~~~~v 108 (331)
T 2x3e_A 63 AALASAGL--ERVD-------AVVLATSTGD-------------------------FCCPATAPRVAARLGLVGALAFDL 108 (331)
T ss_dssp HHHHHHTC--SCCS-------EEEEECSSCS-------------------------EEESCSHHHHHHHTTCTTSEEEEE
T ss_pred HHHHhCCc--ccCC-------EEEEEeCCCC-------------------------CCCChHHHHHHHHhCCCCCcEEEE
Confidence 99999998 4454 6888876421 11123578999999998 899999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+|++.||..|+++|++|++|.+||+|+|.+ ++. +. ++...+++++||||+++|
T Consensus 109 ~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~~-s~~----------~~------------~~d~~~~~~~GdGA~A~v 165 (331)
T 2x3e_A 109 SAAATGFVYGLASVGSLISAGLADSALLVGVDTF-SHT----------LD------------PADRSTRALFGDGAGAVV 165 (331)
T ss_dssp ECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECG-GGG----------SC------------TTCHHHHHHBCCEEEEEE
T ss_pred cCcChHHHHHHHHHHHHHHcCCCCEEEEEEeecc-ccC----------CC------------ccccccceeeccccEEEE
Confidence 9999999999999999999999999999999984 221 00 112346899999999999
Q ss_pred EcchHHHHhcCCeeeEEEEEEEEecCCC---CCCCCC----------------CCh--------HHHHHHHHHHHHHcCC
Q 008700 404 LEELEHAKKRGAKIYAEFRGGSFTSDAY---HMTEPH----------------PDG--------VGVILCIEKALAHSGV 456 (557)
Q Consensus 404 Le~~~~A~~~G~~i~a~I~G~~~~~d~~---~~~~~~----------------p~~--------~~~~~ai~~aL~~Agl 456 (557)
|++.++| ++..+++.. ..+|+. ....|. .++ ..+.++++++|+++|+
T Consensus 166 L~~~~~a--~~~~i~~~~----~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~agl 239 (331)
T 2x3e_A 166 LRAGDAE--EEGALLAFD----LGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRRVLDRVGW 239 (331)
T ss_dssp EEEECTT--STTBEEEEE----EEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEecCCC--CCCceEEEE----EEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9987655 344555432 333332 111111 123 5678899999999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+++|||||++|+++++..|. +.+.++-. .+++ .....+||+.+|+..+.|..+ ++++.+
T Consensus 240 ~~~did~~~~H~~~~~~~d~-----~~~~lg~~~~~~~--~~~~~~Gnt~sAs~~~~L~~~---~~~~~~ 299 (331)
T 2x3e_A 240 QASDLHHLVPHQANTRILAA-----VADQLDLPVERVV--SNIAEVGNTVAASIPLALAHG---LRQGIL 299 (331)
T ss_dssp CGGGCSEEEECCCCHHHHHH-----HHHHHTCCGGGBC--CCHHHHCBCGGGHHHHHHHHH---HHTTCS
T ss_pred CHHHCCEEEEcCCCHHHHHH-----HHHHcCCCHHHHh--hhHhhhCcHHHHHHHHHHHHH---HHhCCC
Confidence 99999999999999998764 55566643 1232 245789999999988877654 455554
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=228.69 Aligned_cols=287 Identities=13% Similarity=0.096 Sum_probs=194.0
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCC-----CCCCCCccc-cccccCCCCCCCCChhhhccCCHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETF-----DCTSFPTKI-AAEIKSFSTDGWVAPKLSKRMDKFMLYL 239 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~-----~~~~~~~~~-~g~i~~fd~~~~i~p~~~~~md~~~rl~ 239 (557)
+.|+|+|+.+|.. .+.+++|+.+......... +.| ...+...+. ....+.|+..+-+++++....++..+|+
T Consensus 10 ~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~r~~~~~~~~~~la 88 (382)
T 1u0m_A 10 ATLCRPSVSVPEHVITMEETLELARRRHTDHPQ-LPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRV 88 (382)
T ss_dssp CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTT-HHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCcccCHHHHHHHHHHhccChhh-HHHHHHHHHhcCCCcceeecChhhhccCCChhHHHHHHHHHHHHHH
Confidence 7899999999997 7888898877543100000 000 011111111 1111223322224455555566778999
Q ss_pred HHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC-
Q 008700 240 LTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG- 318 (557)
Q Consensus 240 l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G- 318 (557)
++++++||+|+|+++++++ .|++++..+ +. ....+.+++..||+++
T Consensus 89 ~~Aa~~aL~~agl~~~~id-------~vi~~t~~~---------------------~~-----~p~~a~~v~~~lGl~~~ 135 (382)
T 1u0m_A 89 PAVIQRALDDAELLATDID-------VIIYVSCTG---------------------FM-----MPSLTAWLINEMGFDST 135 (382)
T ss_dssp HHHHHHHHHHHTCCGGGCS-------EEEEECSSS---------------------CC-----SSCHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHhCCCHHHCC-------EEEEEecCC---------------------CC-----CCcHHHHHHHHhCCCCC
Confidence 9999999999999988666 677776531 11 1246789999999988
Q ss_pred -Ceeee-cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCC----C
Q 008700 319 -PNYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD----G 392 (557)
Q Consensus 319 -p~~tv-~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~d----G 392 (557)
|+++| +++|+|++.||..|+++|++|.+|.+||+|+|.+. +. .+|+|.+++ +
T Consensus 136 ~~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~s-~~---------------------~~~~d~~~~~~~~~ 193 (382)
T 1u0m_A 136 TRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCS-LC---------------------YQPTDLGVGSLLCN 193 (382)
T ss_dssp CEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGG-GG---------------------CCTTCCSHHHHHHH
T ss_pred cceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEeccc-hh---------------------cCcccCCHHHhhcc
Confidence 89999 99999999999999999999999999999999842 21 123443333 8
Q ss_pred ceecCceEEEEEcchHHHHhcCCeeeEEEEEEEE--ecCCCC--------------CC--CCCCChHHHHHHHHHHHHHc
Q 008700 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSF--TSDAYH--------------MT--EPHPDGVGVILCIEKALAHS 454 (557)
Q Consensus 393 ~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~--~~d~~~--------------~~--~~~p~~~~~~~ai~~aL~~A 454 (557)
+++||||+|+||++.+. +|. +|.++.. ..++.. .. .+......+. +++++|+++
T Consensus 194 ~lfGDGA~A~vL~~~~~---~g~----~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~-~i~~aL~~a 265 (382)
T 1u0m_A 194 GLFGDGIAAAVVRGRGG---TGV----RLERNGSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAP-ALKELAGEH 265 (382)
T ss_dssp HHBCEEEEEEEEETTTC---SEE----EEEEEEEEECSSCTTTEEEEEETTEEEEEECTTTGGGHHHHHH-HHHHHHHTT
T ss_pred chhcCCcEEEEEeccCC---CCc----EEEEeeeEecCChHHhcCceecCCceEEEeCcHHHHHHHHHHH-HHHHHHHHc
Confidence 99999999999997643 333 3444333 233321 00 1112245677 999999999
Q ss_pred CCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCccc-ccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 455 GVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRV-NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 455 gl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v-~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
|++++|||||++|+++++..|. +.+.++-. .++.+ ...+..+||+.+|+..+.|..++ +++.+
T Consensus 266 gl~~~dId~v~~H~~~~~i~d~-----~~~~lgl~~~k~~~s~~~~~~~Gnt~sAsi~~~L~~~~---~~g~~ 330 (382)
T 1u0m_A 266 GWDASDLDFYIVHAGGPRILDD-----LSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLF---DEGGV 330 (382)
T ss_dssp SCCSSCCSCCEEECSHHHHHHH-----HHHHSCSCGGGGHHHHHHHHHTCBCTTHHHHHHHHHHH---HSCCC
T ss_pred CCCHHHCCEEEECCCCHHHHHH-----HHHHcCCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHH---HhcCC
Confidence 9999999999999999997764 44556532 12222 24577899999999887776654 55544
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-24 Score=222.42 Aligned_cols=290 Identities=13% Similarity=0.114 Sum_probs=192.3
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCccee---ccC--CCCCCCCccccc-cccCCCCCCC-CChhhhccC----
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISE---IET--FDCTSFPTKIAA-EIKSFSTDGW-VAPKLSKRM---- 232 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~---~~~--~~~~~~~~~~~g-~i~~fd~~~~-i~p~~~~~m---- 232 (557)
.++.|+|+|+.+|.. .+.+++|+.+....+.-.+ ... +...+...+... .-..||+.+| +++.+...+
T Consensus 12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (374)
T 2h84_A 12 NNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETITDVNNQF 91 (374)
T ss_dssp CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCSSCTTSGGGCGGGGGGCCHHHHHHHH
T ss_pred CCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceeecCccccccccccCChHHHHHHHHHH
Confidence 368999999999998 6789999877542210000 000 001111111000 0012444444 344555555
Q ss_pred -CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHH
Q 008700 233 -DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (557)
Q Consensus 233 -d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia 311 (557)
++..+|+++++++||+|+|+++++|| .|++|+..+ +. ....+.+++
T Consensus 92 ~~~~~~la~~Aa~~al~~ag~~~~~id-------~vi~~t~~~---------------------~~-----~p~~a~~v~ 138 (374)
T 2h84_A 92 KKVVPDLAQQACLRALKDWGGDKGDIT-------HIVSVTSTG---------------------II-----IPDVNFKLI 138 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCGGGCC-------EEEEEESSC---------------------CC-----SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeeCC---------------------CC-----CCcHHHHHH
Confidence 78899999999999999999998776 688887531 11 123678999
Q ss_pred HhhCCCC--Ceeeec-CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 312 MDLGWMG--PNYSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 312 ~~lgl~G--p~~tv~-~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
..+|+++ |+++|+ ++|+|++.||..|+++|++|++|.|||+|+|.+.... . .|.|.
T Consensus 139 ~~lGl~~~~~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~~-~--------------------~~~dr 197 (374)
T 2h84_A 139 DLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHF-S--------------------NTDGG 197 (374)
T ss_dssp HHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECCGGGC-C--------------------CSSSH
T ss_pred HHcCcCCCCceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEecchhh-c--------------------CCCCH
Confidence 9999987 899996 8999999999999999999999999999999853110 0 11121
Q ss_pred C--CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEec--CCCC------------C--CCCCC--ChHHHHHHHH
Q 008700 389 N--RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTS--DAYH------------M--TEPHP--DGVGVILCIE 448 (557)
Q Consensus 389 ~--~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~--d~~~------------~--~~~~p--~~~~~~~ai~ 448 (557)
+ .+++++||||+|+||++.+.+..++ ++ +|.+.+... ++.. + ....+ ....+.++++
T Consensus 198 ~~~~~~~lfGDGA~A~vL~~~~~~~~~~--~~-~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~ 274 (374)
T 2h84_A 198 DQMVASSIFADGSAAYIIGCNPRIEETP--LY-EVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVD 274 (374)
T ss_dssp HHHHHHHHBCCEEEEEEEESSCCTTCCC--CE-EEEEEEEEECSSCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhccCcEEEEEecCCCcccCC--ce-eEEeeeeEEeCCCcccceeEEecCcEEEEeCchHHHHHHHHHHHHHH
Confidence 1 1478999999999999876653233 44 566654331 1110 0 00001 1245778999
Q ss_pred HHHHHcC------CCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccc-cCcccccchhhhHHHHHHHHHH
Q 008700 449 KALAHSG------VSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVN-STKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 449 ~aL~~Ag------l~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~-s~K~~iGH~~gAaG~~~li~~~ 517 (557)
++|+++| ++++||||| +|+++++..|. +.+.++-. .++.++ .....+||+.+|+-.+.|..++
T Consensus 275 ~~L~~ag~~~~~~l~~~did~~-~H~~~~~i~d~-----~~~~lgl~~~k~~~s~~~~~~~Gnt~sasi~~~L~~~~ 345 (374)
T 2h84_A 275 TLLDKAKLQTSTAISAKDCEFL-IHTGGKSILMN-----IENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHAR 345 (374)
T ss_dssp HHHHHHTTTSCSCCCSSSSEEE-ECCCCHHHHHH-----HHHHTTCCGGGGHHHHHHHHHHCBCTTHHHHHHHHHHH
T ss_pred HHHHhcCCccccCCChhhcCEe-ECCCCHHHHHH-----HHHHcCCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9999999 999999999 99999997664 44455532 123322 3456789999888777666544
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-24 Score=248.03 Aligned_cols=301 Identities=13% Similarity=0.078 Sum_probs=203.5
Q ss_pred CCCCcEEEEecceeccCC-CCHHHHHH------------HH------HcCCCcceeccCCCCCCCCccccccccCCCCCC
Q 008700 162 MKQKRVVVTGMGLVSPLG-HEPDVFYN------------NL------LEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 222 (557)
Q Consensus 162 ~~~~~IaItG~g~~~P~g-~~~~~lw~------------~L------~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~ 222 (557)
+...++.|+|+|..+|.+ .+.+++++ .+ ..++++|.+...++...+.. ..|+...
T Consensus 599 ~~~~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~~~~~~~~------~~~~~~~ 672 (979)
T 3tsy_A 599 RAKGPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLE------EHPNIGA 672 (979)
T ss_dssp SCCSCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHH------HCHHHHS
T ss_pred cccCCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEecChhhhh------cCccccc
Confidence 345689999999999998 34444444 33 33555565543332211100 0122222
Q ss_pred CCCh----hhhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccc
Q 008700 223 WVAP----KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCV 298 (557)
Q Consensus 223 ~i~p----~~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~ 298 (557)
++.+ ++.+.++....|+++|+++||+|||+++++|| .|++++..
T Consensus 673 ~~~~~~~~r~~~~~~~~~~la~~Aa~~AL~~agl~~~dId-------~ii~~t~~------------------------- 720 (979)
T 3tsy_A 673 YMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKIT-------HLVFCTTS------------------------- 720 (979)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-------EEEEEESS-------------------------
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHCC-------EEEEEeeC-------------------------
Confidence 2333 33333445667999999999999999998777 57887642
Q ss_pred cccccchhHHHHHHhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc
Q 008700 299 PFATTNMGSAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR 375 (557)
Q Consensus 299 ~~~~~n~~a~~ia~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~ 375 (557)
.......+.+|+..||++++ .+.++++|++++.||..|.++|++|.++.|||+|+|.+....
T Consensus 721 -~~~~p~~a~~v~~~lGl~~~~~~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~-------------- 785 (979)
T 3tsy_A 721 -GVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTF-------------- 785 (979)
T ss_dssp -CCCSSCHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTC--------------
T ss_pred -CCCCCcHHHHHHHHcCCCcccEEEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchhe--------------
Confidence 11223578899999999864 499999999999999999999999999999999999732111
Q ss_pred CCCCCCCCCCCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCC----------------
Q 008700 376 NNDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPD---------------- 439 (557)
Q Consensus 376 ~~~p~~~~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~---------------- 439 (557)
.+.....++...+++++||||+|+||++.+.+..++..++....+.....+..+...+.+.
T Consensus 786 ---~~~~~~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 862 (979)
T 3tsy_A 786 ---RGPSEDALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLI 862 (979)
T ss_dssp ---CCCCSSCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHH
T ss_pred ---eCCCccCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEecCchhheEEEEecCceEEEEchHHHHHH
Confidence 0001112222234688999999999998877666677777777777766555443222111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccc-cCcccccchhhhHHHHHHHHHH
Q 008700 440 GVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVN-STKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 440 ~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~-s~K~~iGH~~gAaG~~~li~~~ 517 (557)
...+.++++++|+++|++++||||+++|.+++...|. +.+.++-. ..+..+ .....+||+.+|+=.+.|..++
T Consensus 863 ~~~~~~~~~~al~~agl~~~did~~~~Hq~~~~i~~~-----~~~~lgl~~~k~~~~~~~l~~~GNtssasi~~~L~~~~ 937 (979)
T 3tsy_A 863 SENVEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDA-----VEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMR 937 (979)
T ss_dssp HHHHHHHHHHHHGGGTCCCGGGSEEEECCSCHHHHHH-----HHHHHTCCTTTTHHHHHHHHHHCBCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCcccceEEECCCChHHHHH-----HHHHcCCChHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 1236789999999999999999999999998886554 33444422 122111 1234679999999888888777
Q ss_pred HHHHcC
Q 008700 518 QAIRTG 523 (557)
Q Consensus 518 ~~l~~~ 523 (557)
..++.|
T Consensus 938 ~~~~~G 943 (979)
T 3tsy_A 938 KKSLKG 943 (979)
T ss_dssp HHHHHT
T ss_pred hhhccc
Confidence 666655
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=197.10 Aligned_cols=289 Identities=16% Similarity=0.155 Sum_probs=192.3
Q ss_pred CCCCcEEEEecceeccCC-CCHHHHHHHHHc-----CCC--cceeccCCCCCCCCccccccccCCCCCCCCChhhhccCC
Q 008700 162 MKQKRVVVTGMGLVSPLG-HEPDVFYNNLLE-----GVS--GISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMD 233 (557)
Q Consensus 162 ~~~~~IaItG~g~~~P~g-~~~~~lw~~L~~-----G~~--~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md 233 (557)
|+...|.|+|+|...|.- .+.+++.+.+.. +.+ .|.+ ..+...+.. ..+ -.
T Consensus 8 m~~~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~~~i~~-----~tGi~~R~~-----------~~~-----~~ 66 (345)
T 3s21_A 8 MLFQNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGD-----VAGIHARRL-----------WDQ-----DV 66 (345)
T ss_dssp GSCSSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCCCHHHH-----TTCCSEEEE-----------CSS-----CC
T ss_pred ceecceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCHHHHHH-----hhCceeEEE-----------CCC-----CC
Confidence 445679999999999997 677877766521 211 0000 001111100 001 12
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....|+.+|+++||+++|+++++|| .|++++... .......+.+++..
T Consensus 67 ~~~~La~~Aa~~al~~ag~~~~~Id-------~vi~~t~~~-------------------------~~~~p~~a~~v~~~ 114 (345)
T 3s21_A 67 QASDAATQAARKALIDANIGIEKIG-------LLINTSVSR-------------------------DYLEPSTASIVSGN 114 (345)
T ss_dssp CHHHHHHHHHHHHHHHHTCCGGGCC-------EEEECCSCC-------------------------SCSSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeCCC-------------------------CCCCChHHHHHHHH
Confidence 3578999999999999999998777 688887531 11122467899999
Q ss_pred hCCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCC
Q 008700 314 LGWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRD 391 (557)
Q Consensus 314 lgl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~d 391 (557)
+|+. +|.++|+++|+|++.||..|+++|++|+++.+||+|+|.+..... +...+.++ +...|++|+...+
T Consensus 115 lGl~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~---~~~~~~~~-----~~~~~~~f~~~~~ 186 (345)
T 3s21_A 115 LGVSDHCMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYE---KTLERMTS-----PDVTEEEFRNELA 186 (345)
T ss_dssp HTCCTTCEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHHHH---HHHHHHTC-----TTCCHHHHHHHHG
T ss_pred hCCCCCceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchhhc---cccccccC-----Cccchhhhhhhcc
Confidence 9995 799999999999999999999999999999999999999654321 12222332 3456788988889
Q ss_pred CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCC--C-----CCCCh--------HHHHHHHHHHHHHcCC
Q 008700 392 GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT--E-----PHPDG--------VGVILCIEKALAHSGV 456 (557)
Q Consensus 392 G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~--~-----~~p~~--------~~~~~ai~~aL~~Agl 456 (557)
++++||||+|+||++.+... .+. .|.+.....++.... . ...++ ..+.++++++|+++|+
T Consensus 187 ~~~~GdGA~A~vl~~~~~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl 261 (345)
T 3s21_A 187 ALTLGCGAAAMVMARSELVP-DAP----RYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGW 261 (345)
T ss_dssp GGGBCCEEEEEEEEEGGGST-TSC----EEEEEEEEECGGGTTC-----------CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ceeeccceeEEEEecCCCCC-CCc----ceeeeccccCcchhhhccccCcceEEcHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999865321 122 344444444432111 0 11122 2345678899999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+++|||++..|..+... .+.+.+.++-... .+...-..+||+.+|+-.+.|..++ +.|.+
T Consensus 262 ~~~did~~v~Hq~~~~i-----~~~~~~~lgl~~e-k~~~~l~~~GNt~sasi~~~L~~~~---~~g~~ 321 (345)
T 3s21_A 262 AVEELDQFVIHQVSRPH-----TAAFVKSFGIDPA-KVMTIFGEHGNIGPASVPIVLSKLK---ELGRL 321 (345)
T ss_dssp CGGGCSEEEECCSCHHH-----HHHHHHHHTCCGG-GBCCCHHHHCBCGGGHHHHHHHHHH---HHTCC
T ss_pred CHHHCCEEEeCCCCHHH-----HHHHHHHcCcCHH-HceeeHhhcCchHHHHHHHHHHHHH---HcCCC
Confidence 99999999999876664 3445555553211 1112334689999998877776644 44544
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=201.98 Aligned_cols=227 Identities=13% Similarity=0.118 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....|+++++++||+++|+++++|| .|++|+..+ + .....+.+++..
T Consensus 112 ~~~~la~~Aa~~aL~~agl~~~~Id-------~vi~~t~~~---------------------~-----~~p~~a~~v~~~ 158 (393)
T 1ted_A 112 HAVPLAVDVSKRALAGLPYRAAEIG-------LLVLATSTG---------------------F-----IAPGVDVAIVKE 158 (393)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEE-------EEEEEESSC---------------------C-----CSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEEeCC---------------------C-----ccChHHHHHHHH
Confidence 5678999999999999999987666 577777531 1 112367899999
Q ss_pred hCCCCC--eeee-cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCC
Q 008700 314 LGWMGP--NYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (557)
Q Consensus 314 lgl~Gp--~~tv-~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~ 390 (557)
+|++++ .+++ +++|+|++.||..|.++|++|.+|.|||+|+|.+.... . |+.++
T Consensus 159 lGl~~~~~~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s~~~-----------~------------~~~~r 215 (393)
T 1ted_A 159 LGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNA-----------V------------FADDI 215 (393)
T ss_dssp HTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGC-----------C------------CCSSH
T ss_pred cCcCCCcceeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccC-----------C------------CCCCH
Confidence 999875 5887 99999999999999999999999999999999853210 0 33344
Q ss_pred C----CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEe--cCCCCC--------------CC--CCCChHHHHHHHH
Q 008700 391 D----GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT--SDAYHM--------------TE--PHPDGVGVILCIE 448 (557)
Q Consensus 391 d----G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~--~d~~~~--------------~~--~~p~~~~~~~ai~ 448 (557)
+ ++++||||+|+||++.+.+..++. .+++|.+++.. .|+... .. +......+.++++
T Consensus 216 ~~~~~~~lfGDGA~A~vL~~~~~~~~~~~-~~~~i~~~~~~~~~d~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~ 294 (393)
T 1ted_A 216 NDVVIHSLFGDGCAALVIGASQVQEKLEP-GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVT 294 (393)
T ss_dssp HHHHHHHHBCEEEEEEEEEEECTTSCCCT-TCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhcCccEEEEEecCCCccccCc-ceeeeeccceEEcCCchhhccceecCCCeEEecCchHHHHHHHHHHHHHH
Confidence 4 899999999999998765422333 45678876543 554321 00 1112346778999
Q ss_pred HHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCccc-ccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 449 KALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRV-NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 449 ~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v-~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
++|+++|++++|||||++|++++...|.+ .+.++-. ..+.+ ......+||+.+|+-.+.|..+ ++.+.+
T Consensus 295 ~aL~~agl~~~dId~~~~H~~~~~i~d~~-----~~~lgl~~~k~~~s~~~~~~~GNt~sAsi~~~L~~~---~~~g~~ 365 (393)
T 1ted_A 295 EMLWDNGLQISDIDLWAIHPGGPKIIEQS-----VRSLGISAELAAQSWDVLARFGNMLSVSLIFVLETM---VQQAES 365 (393)
T ss_dssp HHHHHTTCCGGGCSCEEECCSCHHHHHHH-----HHHHTCCGGGGHHHHHHHHHHCBCTHHHHHHHHHHH---HHSCSS
T ss_pred HHHHHcCCCHhHCCEEEECCCcHHHHHHH-----HHHcCCCHHHHHHHHHHHHhhCCchHhHHHHHHHHH---HhcCcc
Confidence 99999999999999999999999977644 3345532 12222 1345678999988866655443 355554
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=187.71 Aligned_cols=270 Identities=17% Similarity=0.264 Sum_probs=179.9
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhh-hccCCHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKL-SKRMDKFMLYLLTAG 243 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~-~~~md~~~rl~l~aa 243 (557)
+|.|+|+|+.+|.. .+.+++|+.+... ++...+.|-.. +. . |..+. ...-.....|+++|+
T Consensus 11 ~v~I~g~g~~lP~~~v~~~~l~~~l~~~--~~~~~~~~i~~----rt-----g------i~~r~~~~~~~~~~~la~~Aa 73 (333)
T 4dfe_A 11 YSRVLGTGSYLPPNRVTNQDLAKRLAEQ--GIETSDEWIVA----RT-----G------IHARYFAEPDVTTSDLAFIAS 73 (333)
T ss_dssp EEEEEEEEEECCSEEEEHHHHHHHHC-----CCCCHHHHHH----HH-----C------CSEEEECCTTCCHHHHHHHHH
T ss_pred ceEEEEEEEECCCcEEcHHHHHHHhccc--cCCCCHHHhHH----hc-----C------ceEEEEcCCCCCHHHHHHHHH
Confidence 69999999999997 7889999886431 11100000000 00 0 10100 011134678999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC--CCCee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW--MGPNY 321 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl--~Gp~~ 321 (557)
++||+++|+++++|| .|++++..+. ......+.+++..+|+ ++|++
T Consensus 74 ~~al~~ag~~~~~Id-------~vi~~t~~~~-------------------------~~~p~~a~~v~~~lgl~~~~~~~ 121 (333)
T 4dfe_A 74 QRAIEAADIDPQSID-------LIIVATSTPD-------------------------FVFPSTACLLQNKLGIRNHGAAF 121 (333)
T ss_dssp HHHHHHHTCCGGGCC-------EEEEECSSCS-------------------------SSBSCHHHHHHHHTTCCSCCEEE
T ss_pred HHHHHHcCCCHHHCC-------EEEEEeCCCC-------------------------CCCCcHHHHHHHHhCCCCCCcEE
Confidence 999999999998777 7888876421 1123457899999999 67999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
+|+++|+|++.||..|+++|++|.++.+||+|+|.+.... . |+....++++||||+|
T Consensus 122 ~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~------------~~d~~~~~lfGDGA~A 178 (333)
T 4dfe_A 122 DVQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRIL-----------D------------FKDRTTCVLFGDGAGA 178 (333)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGC-----------C------------TTCTTTTTTBCEEEEE
T ss_pred EeCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeecccccc-----------C------------cccccceeeeccccEE
Confidence 9999999999999999999999999999999999853221 0 2233467899999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEecCCCC---CCC--------------CCCCh--------HHHHHHHHHHHHHcCC
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTSDAYH---MTE--------------PHPDG--------VGVILCIEKALAHSGV 456 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~---~~~--------------~~p~~--------~~~~~ai~~aL~~Agl 456 (557)
+||++.+ +..++ +....+++.. ... ...++ ..+.++++++|+++|+
T Consensus 179 ~vl~~~~-----~~~i~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl 249 (333)
T 4dfe_A 179 VILQASD-----EPGVL----ASALHADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEKVAVEALEKANL 249 (333)
T ss_dssp EEEEEES-----SCSEE----EEEEEECGGGGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcC-----CCCeE----EEEEEEccCCcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999754 12232 2222222210 000 01111 4567889999999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+++|||++.+|..+... .+.+.+.++-... .+......+||+.+|+=.+.|..+ ++.+.+
T Consensus 250 ~~~did~~~~Hq~~~~i-----~~~~~~~lgl~~~-~~~~~l~~~GNt~sasi~~~L~~~---~~~g~~ 309 (333)
T 4dfe_A 250 SAEQIDWLIPHQANIRI-----MQSTCRKLGLPQE-RMIVTVGEHGNTSAASIPLALDVA---VRDGRI 309 (333)
T ss_dssp CGGGCSEEEECCSCHHH-----HHHHHHHTTCCGG-GBCCCHHHHCBCGGGHHHHHHHHH---HHTTCS
T ss_pred CHHHCCEEEEcCCCHHH-----HHHHHHHhCCCHH-HhhhhHHhcCchHHHHHHHHHHHH---HHcCCC
Confidence 99999999999877664 3455555553211 122234568999999866655543 455554
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.4e-16 Score=162.00 Aligned_cols=215 Identities=14% Similarity=0.148 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....|+.+|+++||+++|+++++|| .|++++...+ ......+.+++..
T Consensus 116 ~~~~La~~Aa~~AL~~agi~~~dId-------~vi~~t~t~~-------------------------~~~p~~a~~v~~~ 163 (392)
T 3led_A 116 ILAEMAVTAAEQAIERWGKPRERIG-------AVLCACSNMQ-------------------------RAYPAMAIEVQNA 163 (392)
T ss_dssp HHHHHHHHHHHHHHHHHCSCGGGEE-------EEEEESSCCS-------------------------CSBSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCCC-------------------------CCccHHHHHHHHH
Confidence 4578999999999999999998777 6888875321 1122367889999
Q ss_pred hCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 314 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 314 lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
+|++.|++.|+.+|+|++.||..|.++|++|.++.|||+|+|.+... +. +......+
T Consensus 164 LGl~~~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~S~~-----------~d------------~~dr~t~~ 220 (392)
T 3led_A 164 LGLGGFAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEICSGH-----------LN------------FRDRDSHF 220 (392)
T ss_dssp TTCCSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGG-----------CC------------TTCTTTTT
T ss_pred hCCCCeEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhcCCc-----------CC------------cCcccCCc
Confidence 99999999999999999999999999999999999999999984211 00 11122468
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCC----------C----------CCCCh--------HHHHH
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT----------E----------PHPDG--------VGVIL 445 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~----------~----------~~p~~--------~~~~~ 445 (557)
++||||+|+||++.+... .+ ..|.+....+++.... . ...++ ..+..
T Consensus 221 lFGDGA~A~vl~~~~~~~-~~----~~i~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~~~ 295 (392)
T 3led_A 221 IFGDVATAAIVERADDAQ-GG----WSILGTKLKTQFSNNIRNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLVSE 295 (392)
T ss_dssp TBCEEEEEEEEEEGGGCC-SS----EEEEEEEEEECCCSSEEBCCSGGGGGSGGGTTSGGGSCEECHHHHHHHHHHHHHH
T ss_pred ccccccEEEEEEecCCCC-CC----CeEEEEEEEEccccccccCCCcccCCCccccccccceEEechHHHHHHHHHHHHH
Confidence 899999999998754210 11 2344443333321100 0 00122 13446
Q ss_pred HHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHH-hcCC-CCcccccCcccccchhhhHHHHHH
Q 008700 446 CIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHC-FGQN-RGLRVNSTKSMIGHLLGAAGAVEA 513 (557)
Q Consensus 446 ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~-~~~~-~~~~v~s~K~~iGH~~gAaG~~~l 513 (557)
+++++|+++|++++|||++..|-.+... .+++.+. ++-. ..-.+...-..+||+.+|+=.+.|
T Consensus 296 ~i~~~L~~~gl~~~dId~~v~Hqan~~i-----~~~~~~~llgl~~~~~k~~~~l~~~GNtssAsipl~L 360 (392)
T 3led_A 296 MIIEHAREIGIDPHGLKRMWLHQANINM-----NEIIGRKVLGRDPTRDENVIILDDYANTSSAGSIIAF 360 (392)
T ss_dssp HHHHHHHHTTCCGGGCSEEEECSSCHHH-----HHHHHHHHHTSCCCTTTBCCCHHHHCBCGGGHHHHHH
T ss_pred HHHHHHHHcCCCHHHCcEEEEcCCCHHH-----HHHHHHHhcCCCCCHHHHHHHHhhhCccHHHHHHHHH
Confidence 7899999999999999999999665543 3344443 3521 111122233457999888755444
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=174.82 Aligned_cols=264 Identities=13% Similarity=0.120 Sum_probs=171.1
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCC-CCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETF-DCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~-~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
.|.|.|+|..+|.- .+.+++.+.+ |.+. .++ ...+...+. +.++ -.....|+++|+
T Consensus 2 ~v~I~~ig~y~P~~~v~~~~l~~~~--~~~~----~~i~~~~Gi~~r~-----------~~~~-----~e~~~~la~~Aa 59 (396)
T 1xpm_A 2 AIGIDKINFYVPKYYVDMAKLAEAR--QVDP----NKFLIGIGQTEMA-----------VSPV-----NQDIVSMGANAA 59 (396)
T ss_dssp CEEEEEEEEECCSEEEEHHHHHHHT--TSCH----HHHHTTTCCSEEE-----------ECCT-----TCCHHHHHHHHH
T ss_pred ceEEEEEEEeCCCeEecHHHHHHHh--CCCH----HHHhhhcCceEEE-----------eCCC-----CCCHHHHHHHHH
Confidence 37899999999987 5666665543 2110 000 000000000 0111 123567999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC--CCee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM--GPNY 321 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~--Gp~~ 321 (557)
++||++ +++++|+ .|++|+..+. ......+..++..+|++ .|++
T Consensus 60 ~~aL~~--~~~~~Id-------~li~~t~~~~-------------------------~~~p~~a~~v~~~lGl~~~~~~~ 105 (396)
T 1xpm_A 60 KDIITD--EDKKKIG-------MVIVATESAV-------------------------DAAKAAAVQIHNLLGIQPFARCF 105 (396)
T ss_dssp HTTCCH--HHHHHEE-------EEEEECSSCS-------------------------BSSSCHHHHHHHHTTCCSSCEEE
T ss_pred HHHHhc--CCHHHCC-------EEEEEeCCCC-------------------------CCCCCHHHHHHHHhCCCCCceEE
Confidence 999987 5665444 4667765321 11224678999999996 5999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
.|+++|+|++.||..|.++|++|.++.|||+|+|. . ... ++ .++++++||||+|
T Consensus 106 ~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~-s-~~~-----------------------~~-~~~~~~~GdGA~A 159 (396)
T 1xpm_A 106 EMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT-A-RYG-----------------------LN-SGGEPTQGAGAVA 159 (396)
T ss_dssp EEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE-E-CCC-----------------------TT-CSSGGGCEEEEEE
T ss_pred EeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh-h-ccc-----------------------cC-CCCCcccccceEE
Confidence 99999999999999999999999999999999996 1 110 11 1368999999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEEEEEec-CCCCCCCCCC------ChHH--------HHHHHHHHHHHcCCCCCCccEEEE
Q 008700 402 LLLEELEHAKKRGAKIYAEFRGGSFTS-DAYHMTEPHP------DGVG--------VILCIEKALAHSGVSREDVNYINA 466 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G~~~~~-d~~~~~~~~p------~~~~--------~~~ai~~aL~~Agl~~~dId~ve~ 466 (557)
+||++. ..+++...+.+... +..+...|.+ ++.. +.++++++|+++|++++|||||..
T Consensus 160 ~vl~~~-------~~i~~~~~~~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~agl~~~did~~~~ 232 (396)
T 1xpm_A 160 MVIAHN-------PSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCF 232 (396)
T ss_dssp EEEEES-------CSSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEE
T ss_pred EEeccC-------CceEEEEeccccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEe
Confidence 999863 23555554433322 3333222322 4443 678999999999999999999999
Q ss_pred cCCCCccCcHHHHHHHHHHhcCC-CCc-----ccccCcccccchhhhHHHHHHHHHHH
Q 008700 467 HATSTPAGDIKEYQALIHCFGQN-RGL-----RVNSTKSMIGHLLGAAGAVEAIAVVQ 518 (557)
Q Consensus 467 hgtgt~~~D~~E~~Al~~~~~~~-~~~-----~v~s~K~~iGH~~gAaG~~~li~~~~ 518 (557)
|.++++..|......+....+-. ..+ +-......+||+.+|+-.+.|..++.
T Consensus 233 H~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~s~~~~~~~GN~~saSi~l~L~~~l~ 290 (396)
T 1xpm_A 233 HVPFTKMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLE 290 (396)
T ss_dssp CCSSHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhcccCCHHHHHHHhhhhhhhhhhcCchHHHHHHHHHHHHHH
Confidence 99999987765432211000000 000 00122356899999998887776553
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.9e-17 Score=169.09 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=159.3
Q ss_pred CChhhhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCcccccccc
Q 008700 224 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATT 303 (557)
Q Consensus 224 i~p~~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 303 (557)
+..+....+.....|+.+|+++||+++|+++++|| .|++++..+ ...
T Consensus 87 ~~~r~~~~~~~~~~La~~Aa~~aL~~ag~~~~~Id-------~li~~t~~~--------------------------~~~ 133 (387)
T 3a5r_A 87 LNVRHKMQVKGVAELGKEAALKAIKEWGQPKSKIT-------HLIVCCLAG--------------------------VDM 133 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-------EEEEEESSC--------------------------CEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecCC--------------------------CCC
Confidence 34455555667889999999999999999998777 688887531 112
Q ss_pred chhHHHHHHhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCC
Q 008700 304 NMGSAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPT 380 (557)
Q Consensus 304 n~~a~~ia~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~ 380 (557)
...+.+++..+|+.++ .++|+.+|+|++.||..|.++|++|.++.|||+|+|.+....
T Consensus 134 p~~a~~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~------------------- 194 (387)
T 3a5r_A 134 PGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTCF------------------- 194 (387)
T ss_dssp SCHHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECCTTTC-------------------
T ss_pred CcHHHHHHHHcCcCCCcceeeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEeccchhh-------------------
Confidence 3467899999999875 889999999999999999999999999999999999843210
Q ss_pred CCCCCCc----CCCCCceecCceEEEEEcchHHHHhcC-CeeeEEEEEEEEecCCCCCC-------C------CCCC---
Q 008700 381 KASRPWD----INRDGFVMGEGAGVLLLEELEHAKKRG-AKIYAEFRGGSFTSDAYHMT-------E------PHPD--- 439 (557)
Q Consensus 381 ~~~rpfd----~~~dG~v~gEGAaalvLe~~~~A~~~G-~~i~a~I~G~~~~~d~~~~~-------~------~~p~--- 439 (557)
..|+| ....++++||||+|+||++.+.. + .....++.+.+......... . ....
T Consensus 195 --~~~~d~~~~~~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~ 269 (387)
T 3a5r_A 195 --RGPSETHLDSMIGQAILGDGAAAVIVGADPDL---TVERPIFELVSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPT 269 (387)
T ss_dssp --CCCCSSCCSSTTHHHHBCCEEEEEEEESSCCT---TTCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHH
T ss_pred --cCCCccchhhccccceeccceeEEEEecCCCc---cccCCceEEEeeeEEEeCCChHhcCceEcCCCeEEEecchHHH
Confidence 11222 22357899999999999875431 2 11123444433221111000 0 0001
Q ss_pred --hHHHHHHHHHHHHHcCCC-CCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Ccccc-cCcccccchhhhHHHHHHH
Q 008700 440 --GVGVILCIEKALAHSGVS-REDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVN-STKSMIGHLLGAAGAVEAI 514 (557)
Q Consensus 440 --~~~~~~ai~~aL~~Agl~-~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~-s~K~~iGH~~gAaG~~~li 514 (557)
...+..+++++|+++|++ .+|| ++..|..+.... +++.+.++-.. ++..+ .....+||+.+|+-.+.|.
T Consensus 270 ~~~~~~~~~i~~~L~~~gl~d~~di-~~v~Hq~~~~i~-----~~~~~~lgl~~ek~~~s~~~l~~~GNtssAsi~~~L~ 343 (387)
T 3a5r_A 270 LISNNIKTCLSDAFTPLNISDWNSL-FWIAHPGGPAIL-----DQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMD 343 (387)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCGGGS-EEEECCSCHHHH-----HHHHHHHTCCGGGGHHHHHHHHHHCBCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCChhhe-eEEECCCCHHHH-----HHHHHHcCCChHHhHHHHHHHHhcCCcchhHHHHHHH
Confidence 234567889999999998 8899 899997766543 34445555321 22221 2456789999999888887
Q ss_pred HHHHH
Q 008700 515 AVVQA 519 (557)
Q Consensus 515 ~~~~~ 519 (557)
.++..
T Consensus 344 ~~~~~ 348 (387)
T 3a5r_A 344 EMRKK 348 (387)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76654
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=167.69 Aligned_cols=234 Identities=13% Similarity=0.094 Sum_probs=159.5
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchh
Q 008700 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMG 306 (557)
Q Consensus 227 ~~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~ 306 (557)
+....++....|+.+|+++||+++|+++++|| .|++++..+ ......
T Consensus 117 r~~~~~~~~~~La~~Aa~~AL~~agl~~~~Id-------~li~~t~~~--------------------------~~~p~~ 163 (413)
T 1xes_A 117 RQAMLAMEVPRLAKEAAEKAIQEWGQSKSGIT-------HLIFCSTTT--------------------------PDLPGA 163 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCC-------EEEEEESCC--------------------------CEESCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEEeCC--------------------------CccchH
Confidence 33444567889999999999999999998777 688887531 112235
Q ss_pred HHHHHHhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCC
Q 008700 307 SAMLAMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKAS 383 (557)
Q Consensus 307 a~~ia~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~ 383 (557)
+.+++..+|+.++ .++|+.+|+|++.||..|.++|++|.++.|||+|+|.+.... .+|. .
T Consensus 164 a~~v~~~lGl~~~~~~~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~~~---------------~~~~--d 226 (413)
T 1xes_A 164 DFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTF---------------RGPS--E 226 (413)
T ss_dssp HHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTTTC---------------CCCC--T
T ss_pred HHHHHHHcCcCCccchhceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhhhh---------------cCCC--c
Confidence 7899999999874 889999999999999999999999999999999999843210 0111 1
Q ss_pred CCCcCCCCCceecCceEEEEEcchHHHHhcCC-eeeEEEEEEEEec--CCCC--------------CCCCCC--ChHHHH
Q 008700 384 RPWDINRDGFVMGEGAGVLLLEELEHAKKRGA-KIYAEFRGGSFTS--DAYH--------------MTEPHP--DGVGVI 444 (557)
Q Consensus 384 rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~-~i~a~I~G~~~~~--d~~~--------------~~~~~p--~~~~~~ 444 (557)
++|+....++++||||+|+||++.+.. +. ....++.+.+... +... +....+ ....+.
T Consensus 227 ~~~~~~~~~~lfGDGA~A~vl~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~ 303 (413)
T 1xes_A 227 THLDSLVGQALFGDGASALIVGADPIP---QVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIE 303 (413)
T ss_dssp TCHHHHHHHHHBCCEEEEEEEESSCCT---TTSCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHH
T ss_pred cchhhcccceeEecccEEEEEecCCCc---cccCCceEEEeeeeEEcCCChhhcCcEEecCceEEEecccHHHHHHHHHH
Confidence 345555678999999999999875431 21 1123444443221 1100 000000 124556
Q ss_pred HHHHHHHHHcCCC-CCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccc-cCcccccchhhhHHHHHHHHHHHH
Q 008700 445 LCIEKALAHSGVS-REDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVN-STKSMIGHLLGAAGAVEAIAVVQA 519 (557)
Q Consensus 445 ~ai~~aL~~Agl~-~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~-s~K~~iGH~~gAaG~~~li~~~~~ 519 (557)
++++++|+++|++ .+|| ++..|..+... .+.+.+.++-. .++..+ .....+||+.+|+-.+.|..++..
T Consensus 304 ~~i~~~L~~~gl~d~~di-~~v~Hq~~~~i-----~~~~~~~Lgl~~ek~~~s~~~l~~~GNtssAsi~~~L~~~~~~ 375 (413)
T 1xes_A 304 NCMVEAFSQFKISDWNKL-FWVVHPGGRAI-----LDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKA 375 (413)
T ss_dssp HHHHHHHGGGTCCCGGGS-EEEECCSCHHH-----HHHHHHHTTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCccce-eEEECCCCHHH-----HHHHHHHcCCChHHhHHHHHHHHhcCcCchhhHHHHHHHHHHh
Confidence 7889999999998 8888 79999776553 33455556532 222221 234568999999988888777654
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=161.32 Aligned_cols=280 Identities=16% Similarity=0.153 Sum_probs=172.5
Q ss_pred CCCCCCCcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHH
Q 008700 159 KPHMKQKRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFML 237 (557)
Q Consensus 159 ~~~~~~~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~r 237 (557)
.+.++...+.|+|+|...|.- .+.+++.+.+. +.+ ...+ +...+...+. +..+ -.....
T Consensus 23 ~~~~~~~~v~I~gig~~lP~~~v~n~~l~~~~~-~~~-~~~i--~~~tGI~~R~-----------~a~~-----~~~~~~ 82 (365)
T 3gwa_A 23 TPAAHPPRAAIADIAGHLPEQVLTNDVLAQLYP-DWP-AEKI--LAKTGIRERR-----------IAAP-----RETAAD 82 (365)
T ss_dssp ------CEEEEEEEEEECCSEEEEHHHHHHHCT-TCC-HHHH--HHHHCCCEEE-----------ECCT-----TCCHHH
T ss_pred CccceeccEEEEEEEEeCCCcEEcHHHHHHHcc-CCC-HHHH--HHhcCccEEE-----------ECCC-----CCCHHH
Confidence 345567789999999999997 67777766541 110 0000 0000000000 0111 112567
Q ss_pred HHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC
Q 008700 238 YLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (557)
Q Consensus 238 l~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~ 317 (557)
|+.+|+++||+++|+++++|| .|++++...+ ......+.+++..+|+.
T Consensus 83 La~~Aa~~aL~~ag~~~~~Id-------~vi~~t~~~~-------------------------~~~p~~a~~v~~~lGl~ 130 (365)
T 3gwa_A 83 LAYEAARKLFAQGAVGADQVD-------FVILCTQAPD-------------------------YVLPTSACMLQHRLGIP 130 (365)
T ss_dssp HHHHHHHHHHHTTSCCGGGCC-------EEEEEESSCS-------------------------CSBSCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCHHHCC-------EEEEEeCCCC-------------------------CCCCcHHHHHHHHcCCC
Confidence 999999999999999998777 6888875321 11223578999999996
Q ss_pred --CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCcee
Q 008700 318 --GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVM 395 (557)
Q Consensus 318 --Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~ 395 (557)
.|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+..... +. | ....+++
T Consensus 131 ~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~~----------------~~------d-r~~~~lf 187 (365)
T 3gwa_A 131 THAGALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLH----------------PL------D-KSVRTLF 187 (365)
T ss_dssp TTSEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGSC----------------TT------C-HHHHTTB
T ss_pred CCceEEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccCC----------------cc------c-ccccccc
Confidence 699999999999999999999999999999999999998543210 00 0 1124579
Q ss_pred cCceEEEEEcchHHHHhcCCeeeEEEEEEE-Ee-------cCCCCCCC--------------------CCCCh-------
Q 008700 396 GEGAGVLLLEELEHAKKRGAKIYAEFRGGS-FT-------SDAYHMTE--------------------PHPDG------- 440 (557)
Q Consensus 396 gEGAaalvLe~~~~A~~~G~~i~a~I~G~~-~~-------~d~~~~~~--------------------~~p~~------- 440 (557)
||||+|+||++.+.. ...+.....+.. .. ..+..... ...++
T Consensus 188 GDGAaA~vl~~~~~~---~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~ 264 (365)
T 3gwa_A 188 GDGASATAVIAEHGE---LERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFS 264 (365)
T ss_dssp CCEEEEEEEEEECSS---SCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECHHHHHHHH
T ss_pred cceeEEEEEEecCCC---CCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEeccHHHHHHH
Confidence 999999999875321 011222211111 00 00000000 00011
Q ss_pred -HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHHHHH
Q 008700 441 -VGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518 (557)
Q Consensus 441 -~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~~~~ 518 (557)
..+.++++++|+++|++++|||++..|..+... .+.+.+.++-.. ++. ..-..+||+.+|+=.+.|..
T Consensus 265 ~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~i-----~~~~~~~Lgl~~ek~~--~~l~~~GNtssAsipl~L~~--- 334 (365)
T 3gwa_A 265 LAEVPRAADRLLALAGEPRENIDCFVLHQANRFM-----LDALRKKMKIPEHKFP--VLMEHCGNTVSSTLPLALET--- 334 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEECCCCHHH-----HHHHHHHHTCCGGGSC--CCCTTTCBCGGGHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH-----HHHHHHHhCCCHHHHH--HHHhcccchHHHHHHHHHHH---
Confidence 234567899999999999999999999655553 455555565321 122 23356899998886655444
Q ss_pred HHHcCCCC
Q 008700 519 AIRTGWIH 526 (557)
Q Consensus 519 ~l~~~~lp 526 (557)
.++.+.+.
T Consensus 335 ~~~~g~~~ 342 (365)
T 3gwa_A 335 MRANGTLA 342 (365)
T ss_dssp HHHTTCCC
T ss_pred HHHcCCCC
Confidence 34556553
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-16 Score=158.14 Aligned_cols=217 Identities=17% Similarity=0.195 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .|++++..+. ......+.+++..+
T Consensus 58 ~~~La~~Aa~~aL~~ag~~~~~Id-------~vi~~t~~~~-------------------------~~~p~~a~~v~~~l 105 (323)
T 3il3_A 58 VATMGFEAAKNAIEAAQINPQDIE-------LIIVATTSHS-------------------------HAYPSAACQVQGLL 105 (323)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCC-------EEEEECSCCS-------------------------CSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeCCCC-------------------------CCCccHHHHHHHHh
Confidence 567999999999999999998777 6888875421 11123678899999
Q ss_pred CCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
|+. .|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... . +......+
T Consensus 106 Gl~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~------------~~d~~~~~ 162 (323)
T 3il3_A 106 NIDDAISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLNSRKL-----------D------------ETDRSTVV 162 (323)
T ss_dssp TCSSCEEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGSC-----------C------------TTCTTTTT
T ss_pred CCCCccEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeecccccc-----------C------------cccccccc
Confidence 995 69999999999999999999999999999999999999843210 0 11122467
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCC---CCCC------------CCCh--------HHHHHHHHHH
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH---MTEP------------HPDG--------VGVILCIEKA 450 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~---~~~~------------~p~~--------~~~~~ai~~a 450 (557)
++||||+|+||++.+ +..++ +....+++.. ...| ..++ ..+.++++++
T Consensus 163 lfGDGA~A~vl~~~~-----~~~i~----~~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~ 233 (323)
T 3il3_A 163 LFGDGAGAVILEASE-----QEGII----STHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEET 233 (323)
T ss_dssp TBCEEEEEEEEEEES-----SCCEE----EEEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEEEEcC-----CCCeE----EEEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHH
Confidence 899999999999753 22232 2222222210 0000 0111 2345678999
Q ss_pred HHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 451 LAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 451 L~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
|+++|++++|||++..|-.+... .+.+.+.++-.. ++. ..-..+||+.+|+=.+.|..+ ++.+.+
T Consensus 234 l~~~gl~~~did~~v~Hq~~~~i-----~~~~~~~lgl~~ek~~--~~l~~~GNt~sasi~~~L~~~---~~~g~~ 299 (323)
T 3il3_A 234 LLANNLDKKDLDWLVPHQANLRI-----ITATAKKLEMDMSQVV--VTLDKYANNSAATVPVALDEA---IRDGRI 299 (323)
T ss_dssp HHTTTCCTTTCCEEEECCSCHHH-----HHHHHHHTTCCGGGBC--CCHHHHCBCGGGHHHHHHHHH---HHTTSS
T ss_pred HHHcCCCHHHCCEEEEcCCCHHH-----HHHHHHHcCcCHHHhh--ccHhhcCchHHHHHHHHHHHH---HHcCCC
Confidence 99999999999999999765543 345555555321 122 123457999998876666554 455554
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-16 Score=162.10 Aligned_cols=216 Identities=14% Similarity=0.189 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .|++++..+. ......+.+++..+
T Consensus 74 ~~~La~~Aa~~aL~~agl~~~dId-------~vi~~t~~~~-------------------------~~~p~~a~~v~~~l 121 (359)
T 3h78_A 74 VSALMVPAARQAIEAAGLLPEDID-------LLLVNTLSPD-------------------------HHDPSQACLIQPLL 121 (359)
T ss_dssp THHHHHHHHHHHHHHTTCCGGGCC-------EEEEECSSCS-------------------------SSBSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHCC-------EEEEEeCCCC-------------------------CCCCcHHHHHHHHc
Confidence 467999999999999999998777 6888875421 11223678999999
Q ss_pred CCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
|+. .|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... . +... .....+
T Consensus 122 Gl~~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~~-----------~-----~~d~-----~~~t~~ 180 (359)
T 3h78_A 122 GLRHIPVLDIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKRM-----------D-----CSDR-----GRNLSI 180 (359)
T ss_dssp TCCSCCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGGC-----------C-----CSTT-----THHHHT
T ss_pred CCCCCcEEEECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhcccC-----------C-----cccc-----cccccc
Confidence 996 49999999999999999999999999999999999999853221 0 0000 011346
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCC-----------CCCCC--------------CCCh--------
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY-----------HMTEP--------------HPDG-------- 440 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~-----------~~~~~--------------~p~~-------- 440 (557)
++||||+|+||++.+. .+..++.. ...+++. ....+ ..++
T Consensus 181 lfGDGAaA~vl~~~~~---~~~~i~~~----~~~s~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~ 253 (359)
T 3h78_A 181 LLGDGAGAVVVSAGES---LEDGLLDL----RLGADGNYFDLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHAS 253 (359)
T ss_dssp TBCEEEEEEEEECCSC---SSSEEEEE----EEEECGGGGGGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHHH
T ss_pred eecceeEEEEEEecCC---CCCceEEE----EEEEccCccceEEeCCCCCccCCccccccccccCCceEeccHHHHHHHH
Confidence 7899999999997432 12233322 2222211 00000 0111
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHHHH
Q 008700 441 VGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 441 ~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~~~ 517 (557)
..+.++++++|+++|++++|||++..|-.+... .+.+.+.++-.. ++.. .-..+||+.+|+=.+.|..++
T Consensus 254 ~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~i-----~~~~~~~lgl~~ek~~~--~l~~~GNt~sAsi~l~L~~~~ 324 (359)
T 3h78_A 254 QTLVRIAGEMLAAHELTLDDIDHVICHQPNLRI-----LDAVQEQLGIPQHKFAV--TVDRLGNMASASTPVTLAMFW 324 (359)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHH-----HHHHHHHHTCCGGGBCC--CHHHHCBCGGGHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH-----HHHHHHHhCcCHHHhhh--hhhcccchHHHHHHHHHHHHH
Confidence 234568899999999999999999999765553 345555565321 2222 234679999998776666554
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.8e-16 Score=159.54 Aligned_cols=214 Identities=17% Similarity=0.118 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .|++++..++ ......+.+++..+
T Consensus 66 ~~~La~~Aa~~aL~~agi~~~~Id-------~vi~~t~~~~-------------------------~~~p~~a~~v~~~l 113 (354)
T 4efi_A 66 AGDLCRKAGEKLLAGLGWQADSID-------ALIFVSQTPN-------------------------YRLPATAFVLQAEL 113 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSSCS-------------------------CSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeCCCC-------------------------CCCCcHHHHHHHHc
Confidence 467999999999999999998777 6888876421 11234678999999
Q ss_pred CC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCC
Q 008700 315 GW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDG 392 (557)
Q Consensus 315 gl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG 392 (557)
|+ +.|.+.|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... . ++.....
T Consensus 114 Gl~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~------------~~d~~~~ 170 (354)
T 4efi_A 114 DLPASCLALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKMI-----------D------------PTDRSTS 170 (354)
T ss_dssp TCCTTSEEEEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGC-----------C------------TTCHHHH
T ss_pred CcCCCccEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccC-----------C------------ccccccc
Confidence 99 469999999999999999999999999999999999999843211 0 0111124
Q ss_pred ceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCC-----CC----CCC-----------------CCCh------
Q 008700 393 FVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAY-----HM----TEP-----------------HPDG------ 440 (557)
Q Consensus 393 ~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~-----~~----~~~-----------------~p~~------ 440 (557)
+++||||+|+||++.+.. .++ .+...+++. .. ..| ..++
T Consensus 171 ~lfGDGA~A~vl~~~~~~-----~~~----~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~ 241 (354)
T 4efi_A 171 LLFGDAGTMTALETSNGD-----AAA----HFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNF 241 (354)
T ss_dssp TTBCCEEEEEEEEECCSC-----CEE----EEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHH
T ss_pred cccccceeEEEEeecCCC-----Cce----EEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHH
Confidence 679999999999875321 121 112212211 00 000 0111
Q ss_pred --HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHH
Q 008700 441 --VGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518 (557)
Q Consensus 441 --~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~ 518 (557)
..+.++++++|+++|++++|||++..|-.+... .+.+.+.++-... .+...-..+||+.+|+=.+.|..++.
T Consensus 242 ~~~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~i-----~~~~~~~Lgl~~e-k~~~~l~~~GNt~sasi~~~L~~~~~ 315 (354)
T 4efi_A 242 TLNAVPKLVSRTLDIAGRDKDSYDAFLFHQANLFM-----LKHLAKKAGLPAE-RVPVNIGEYGNTSCASIPLLITTELK 315 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCSEEEECCCCHHH-----HHHHHHHTTCCGG-GSCCCHHHHCBCGGGHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHHH-----HHHHHHHhCcCHH-HHHHHHhhhCcHHHHHHHHHHHHHHH
Confidence 234567899999999999999999999765553 3455555553211 11122356899999988777766554
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=150.57 Aligned_cols=222 Identities=17% Similarity=0.117 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....|+.+|+++||+++|+++++|| .|++++... ..+ ... .++.+++..
T Consensus 53 ~~~~La~~Aa~~aL~~ag~~~~dId-------~vi~~t~~~------------------~~~----d~~--~~a~~v~~~ 101 (357)
T 3s3l_A 53 APPRMAARAARAALGRGDVDPADVS-------LVLHSSLWF------------------QGI----DLW--PAASYVAHE 101 (357)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGGGEE-------EEEEECSSC------------------CSS----SSS--CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccC------------------CCc----ccc--cHHHHHHHH
Confidence 3578999999999999999998777 688887520 001 111 247889999
Q ss_pred hCCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCC--EEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCC
Q 008700 314 LGWM-GPNYSISTACATSNFCILNAANHIIRGEAN--VMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (557)
Q Consensus 314 lgl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d--~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~ 390 (557)
+|+. .|.+.|+.+|+|++.||..|.++|++|.++ .+||+|+|.+..+. ...|+. +
T Consensus 102 lG~~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~---------------------~~~~~~-~ 159 (357)
T 3s3l_A 102 AVGRHVPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPR---------------------IDRWNS-V 159 (357)
T ss_dssp HTCSSSCEEEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTT---------------------CCTTTS-S
T ss_pred hCCCCCcEEEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEecccccc---------------------cccccc-c
Confidence 9996 499999999999999999999999999999 99999999853211 001222 2
Q ss_pred CCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCC--C------CCC-------CCC--h-------------
Q 008700 391 DGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYH--M------TEP-------HPD--G------------- 440 (557)
Q Consensus 391 dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~--~------~~~-------~p~--~------------- 440 (557)
.++++||||+|+||++.+. + ..|.++...+++.. . ..+ ... +
T Consensus 160 ~~~lfGDGA~A~vl~~~~~----~----~~i~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~ 231 (357)
T 3s3l_A 160 DVTMYGDGAAALVLSTRDG----F----ARVLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAELADLPD 231 (357)
T ss_dssp SSCCBCCEEEEEEEESSCC----S----EEEEEEEEEECGGGGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHCCTT
T ss_pred CCcccccccEEEEEecCCC----C----CeEEEEEEEEccChhhhcccCCCCCCCccCcCCccccccchhhhhcccchhh
Confidence 5788999999999987431 1 12444444444321 0 000 001 1
Q ss_pred ------HHHHHHHHHHHHHcCCCCCCccEEEE-cCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHH
Q 008700 441 ------VGVILCIEKALAHSGVSREDVNYINA-HATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVE 512 (557)
Q Consensus 441 ------~~~~~ai~~aL~~Agl~~~dId~ve~-hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~ 512 (557)
..+.++++++|+++|++++|||++.. |..... -+ ++.+.++-.. ++.. .....+||+.+|+=.+.
T Consensus 232 ~~~~~~~~~~~~i~~~L~~~gl~~~did~~v~~hq~~~~-~~-----~~~~~lgl~~ek~~~-~~~~~~GNt~aAsipl~ 304 (357)
T 3s3l_A 232 LTHRYIDLLVAAKTQALEDAGTAIEDIAHAVIPVSRRGT-GH-----ELHDLLGLPDERTSW-AYGRTTGHVGAGDQYAG 304 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCSEEECCSCCCCS-SC-----CHHHHHTSCGGGBTH-HHHHHHCBCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH-HH-----HHHHHcCCCHHHhHH-HhccccccchHhHHHHH
Confidence 13456889999999999999999996 866555 33 3444455321 1211 12224688888876655
Q ss_pred HHHHHHHHHcCCCC
Q 008700 513 AIAVVQAIRTGWIH 526 (557)
Q Consensus 513 li~~~~~l~~~~lp 526 (557)
|..+ ++.|.+.
T Consensus 305 L~~~---~~~g~l~ 315 (357)
T 3s3l_A 305 LAHL---VENALVQ 315 (357)
T ss_dssp HHHH---HHTTCCC
T ss_pred HHHH---HHcCCCC
Confidence 5443 4556553
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=146.55 Aligned_cols=266 Identities=14% Similarity=0.164 Sum_probs=164.3
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
..+.|+|+|...|.- .+.+++.+.+..-...|.+. .+...+ .+..+. ....|+.+|+
T Consensus 3 ~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~~-----~Gi~~R-----------~~a~~~------e~~~La~~Aa 60 (321)
T 3il6_A 3 NYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHSR-----TGISER-----------RIVTQE------NTSDLCHQVA 60 (321)
T ss_dssp CEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHHH-----HSCSEE-----------ECCSSC------CHHHHHHHHH
T ss_pred CcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhhh-----cCceEE-----------EECCCC------CHHHHHHHHH
Confidence 358999999999997 67777765431100000000 000000 001111 1678999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCC-CCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWM-GPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~-Gp~~t 322 (557)
++||+++|+++++|| .|++|+...+ ......+.+++..+|+. .|.+.
T Consensus 61 ~~aL~~ag~~~~~Id-------~li~~t~~~~-------------------------~~~p~~a~~v~~~lGl~~~~~~~ 108 (321)
T 3il6_A 61 KQLLEKSGKQASEID-------FILVATVTPD-------------------------FNMPSVACQVQGAIGATEAFAFD 108 (321)
T ss_dssp HHHHHHHTCCGGGCC-------EEEEECSSCS-------------------------CSSSCHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHcCCCHHHCC-------EEEEEeCCCC-------------------------cCCCcHHHHHHHHcCCCCceEEE
Confidence 999999999998777 6888875421 11224678999999996 69999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+.+|+|++.||..|.++|++|.++.+||+|+|.+.... . +......+++||||+|+
T Consensus 109 v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~-----------~------------~~dr~~~~lfGDGA~A~ 165 (321)
T 3il6_A 109 ISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETFSKML-----------D------------WTDRSTAVLFGDGAAGV 165 (321)
T ss_dssp ECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECGGGGS-----------C------------TTCTTTGGGBCCEEEEE
T ss_pred eCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEccccccC-----------C------------ccccccceeeccccEEE
Confidence 999999999999999999999999999999999853210 0 11122457899999999
Q ss_pred EEcchHHHHhcCCeeeEEEEEEEEecCCC------------CCCC----------CCCChHHH----HHHHHHHHHHcCC
Q 008700 403 LLEELEHAKKRGAKIYAEFRGGSFTSDAY------------HMTE----------PHPDGVGV----ILCIEKALAHSGV 456 (557)
Q Consensus 403 vLe~~~~A~~~G~~i~a~I~G~~~~~d~~------------~~~~----------~~p~~~~~----~~ai~~aL~~Agl 456 (557)
||++.+. ..++. ....+++. .... ...++..+ .+.+.++++++ +
T Consensus 166 vl~~~~~-----~~i~~----~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~-l 235 (321)
T 3il6_A 166 LIEAAET-----PHFLN----EKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDVSQNILSL-V 235 (321)
T ss_dssp EEEEESS-----CCEEE----EEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHHHHHHHHHHHTT-C
T ss_pred EEEEcCC-----CCEEE----EEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHHHHHHHHHHHHH-c
Confidence 9997542 12332 22222210 0000 01112211 12333333332 2
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-CcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCC
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHP 527 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp 527 (557)
.++|||++..|-.+... .+.+.+.++-.. ++. ..-..+||+.+|+=.+.|.. .++.+.+.|
T Consensus 236 ~~~did~~v~Hq~~~~i-----~~~~~~~lgl~~ek~~--~~l~~~GNt~sasi~~~L~~---~~~~g~~~~ 297 (321)
T 3il6_A 236 TDETVDYLLLHQANVRI-----IDKIARKTKISREKFL--TNMDKYGNTSAASIPILLDE---AVENGTLIL 297 (321)
T ss_dssp CGGGCSEEEECCSCHHH-----HHHHHHHHTCCGGGBC--CCGGGTCBCGGGHHHHHHHH---HHHTTSSCT
T ss_pred CcccCCEEEEcCCCHHH-----HHHHHHHcCcCHHHhh--hhHhhcccHHHHHHHHHHHH---HHHhCCCCC
Confidence 28999999999655543 455666665321 222 23466899998886665554 345565533
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-15 Score=156.55 Aligned_cols=228 Identities=15% Similarity=0.112 Sum_probs=151.3
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
.|.|.|+|..+|.- .+.+++.+.+ |.+ +.|-..+.. +..+ .+..+. .....|+.+|++
T Consensus 3 ~v~I~~ig~y~P~~~v~~~~l~~~~--g~~-----~~~~~~g~G------~~~~---~~~~~~-----e~~~~La~~Aa~ 61 (450)
T 2f82_A 3 NVGILAMDIYFPPTCVQQEALEAHD--GAS-----KGKYTIGLG------QDCL---AFCTEL-----EDVISMSFNAVT 61 (450)
T ss_dssp SCEEEEEEEECCSEEEEHHHHHHHT--TCC-----TTTTTTTSC------CCEE---ECCCTT-----CCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCeeccHHHHHHHh--CCC-----HHHhhhhhC------ceee---eeCCCC-----CCHHHHHHHHHH
Confidence 48899999999987 5677765543 221 011000000 0000 000111 124689999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC----CCCe
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW----MGPN 320 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl----~Gp~ 320 (557)
+||+++|+++++|+ .|++|+..+. ......+..++..+|+ ..+.
T Consensus 62 ~aL~~agi~~~~Id-------~li~~t~t~~-------------------------~~~p~~a~~v~~~lgl~g~~~~~~ 109 (450)
T 2f82_A 62 SLLEKYKIDPKQIG-------RLEVGSETVI-------------------------DKSKSIKTFLMQLFEKCGNTDVEG 109 (450)
T ss_dssp HHHHHTTCCGGGEE-------EEEEECCCCS-------------------------CSSSCHHHHHTHHHHTTTCCCCBC
T ss_pred HHHHHcCcCHHHCC-------EEEEEecCCC-------------------------CCCCcHHHHHHHHhCCcCCCCceE
Confidence 99999999987666 5777875321 1123467888888888 3589
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCCC--CEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 321 YSISTACATSNFCILNAANHIIRGEA--NVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~~--d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
+.|+.+|+|++.||..|.++|++|.+ +.|||+|+|.+. |+....+.++|||
T Consensus 110 ~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~---------------------------~~~~~~~~~fGDG 162 (450)
T 2f82_A 110 VDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV---------------------------YAEGPARPTGGAA 162 (450)
T ss_dssp CEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC---------------------------CSSSTTGGGCEEE
T ss_pred EEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc---------------------------ccCCCCCcccccc
Confidence 99999999999999999999999998 999999999742 1112356789999
Q ss_pred eEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCC-------CCCCChH--------HHHHHHHHHHH------HcCCC
Q 008700 399 AGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT-------EPHPDGV--------GVILCIEKALA------HSGVS 457 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~-------~~~p~~~--------~~~~ai~~aL~------~Agl~ 457 (557)
|+|+||++.+. . .+.....|.... +.+... .|..++. .+..+++++|+ ++|++
T Consensus 163 A~A~ll~~~~~----~-~~~~~~~g~~~~-~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~~~~~agl~ 236 (450)
T 2f82_A 163 AIAMLIGPDAP----I-VFESKLRGSHMA-HVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFS 236 (450)
T ss_dssp EEEEEEESSCS----E-EEEEEEEEEEEC-CCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred eEEEEeccCCc----e-EEEeccceeehh-hccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 99999986532 1 122222333332 111111 1223332 34567888886 89999
Q ss_pred CCCccEEEEcCCCCccCcHHHH
Q 008700 458 REDVNYINAHATSTPAGDIKEY 479 (557)
Q Consensus 458 ~~dId~ve~hgtgt~~~D~~E~ 479 (557)
++|||||..|..++...+.+..
T Consensus 237 ~~did~~v~Hq~~~~i~~~~~~ 258 (450)
T 2f82_A 237 INDADYFVFHSPYNKLVQKSFA 258 (450)
T ss_dssp GGGCSEEEECCSSHHHHHHHHH
T ss_pred hhhcCEEEecCChHHHHHHHHH
Confidence 9999999999999987776543
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=156.95 Aligned_cols=239 Identities=16% Similarity=0.113 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHH
Q 008700 232 MDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (557)
Q Consensus 232 md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia 311 (557)
++....|+.+|+++||+++|+++++|| .|++++..+ ......+.+++
T Consensus 99 ~~~~~~La~~Aa~~aL~~ag~~~~dId-------~vi~~t~t~--------------------------~~~p~~a~~v~ 145 (393)
T 3ov2_A 99 VEEIPRLAKEAAEKAIKEWGRPKSEIT-------HLVFCSISG--------------------------IDMPGADYRLA 145 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGCC-------EEEEEESSC--------------------------CCBSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEEeCC--------------------------CCCCCHHHHHH
Confidence 345778999999999999999998877 688887641 11234688999
Q ss_pred HhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 312 MDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 312 ~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
..+|+.+. .+.++.+|++++.||..|.++|++|.++.|||+|+|.+.... .+|+. +.++.
T Consensus 146 ~~LGl~~~~~~~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~---------------~~~~d--~~~~~ 208 (393)
T 3ov2_A 146 TLLGLPLTVNRLMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSF---------------RGPNE--GDFEA 208 (393)
T ss_dssp HHHTCCTTSEEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGGTC---------------CCCCT--TCHHH
T ss_pred HHcCCCCCcceeeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchhc---------------cCCcc--cchhh
Confidence 99999864 699999999999999999999999999999999999852110 00110 00111
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEe-cCCCCC-----C------CCCCC-----hHHHHHHHHHHH
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT-SDAYHM-----T------EPHPD-----GVGVILCIEKAL 451 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~-~d~~~~-----~------~~~p~-----~~~~~~ai~~aL 451 (557)
....+++||||+|+||++.+... -...++-.+...... .+.... . ...+. ...+..+++++|
T Consensus 209 ~~~~~lFGDGAaA~vl~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L 287 (393)
T 3ov2_A 209 LAGQAGFGDGAGAVVVGADPLEG-IEKPIYEIAAAMQETVAESQGAVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERAL 287 (393)
T ss_dssp HHHHHHBCCEEEEEEEESSCCTT-TCCCSEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHTTSHHHHHHHH
T ss_pred hcccccccCccEEEEEEecCCCc-ccCceeEEEecCcEEecCCcccCceeeeCCceEEEECcHHHHHHHHHHHHHHHHHH
Confidence 12367799999999998754310 011122222211111 111000 0 00111 112346899999
Q ss_pred HHcCCCC-CCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccc-cCcccccchhhhHHHHHHHHHHHH-HHcCCCCC
Q 008700 452 AHSGVSR-EDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVN-STKSMIGHLLGAAGAVEAIAVVQA-IRTGWIHP 527 (557)
Q Consensus 452 ~~Agl~~-~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~-s~K~~iGH~~gAaG~~~li~~~~~-l~~~~lpp 527 (557)
+++|+++ +|| ++..|-.+... .+++.+.++-. ..+..+ .+-..+||+.+|+=.+.|-.++.. ++.|.+.+
T Consensus 288 ~~~gl~~~~di-~~v~Hq~n~~i-----~~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsip~~L~~~~~~~~~~g~~~~ 361 (393)
T 3ov2_A 288 APLGVREWNDV-FWVAHPGNWAI-----IDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRSTT 361 (393)
T ss_dssp GGGTCCSGGGS-EEEECCCCHHH-----HHHHHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSBT
T ss_pred HHcCCCcccCc-EEEECCCChHH-----HHHHHHHcCCCHHHHHHHHHHHHHhCChHHhHHHHHHHHHHHhhhhcCCcCC
Confidence 9999997 888 89999654443 45566666532 122211 123457999999887777666543 33455533
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=151.77 Aligned_cols=226 Identities=16% Similarity=0.136 Sum_probs=143.0
Q ss_pred cCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHH
Q 008700 231 RMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAML 310 (557)
Q Consensus 231 ~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~i 310 (557)
.++....|+.+|+++||+++|+++++|| .|++++..+ ......+.++
T Consensus 92 ~~~~~~~La~~Aa~~AL~~ag~~~~dId-------~li~~t~t~--------------------------~~~p~~a~~v 138 (387)
T 3oit_A 92 AADAVPELAAEAAKKAIAEWGRPAADIT-------HLVVTTNSG--------------------------AHVPGVDFRL 138 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCC-------EEEEEESSC--------------------------CEESCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeeCC--------------------------CCcccHHHHH
Confidence 3446788999999999999999998887 688887531 1123467899
Q ss_pred HHhhCCCCC---eeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCc
Q 008700 311 AMDLGWMGP---NYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWD 387 (557)
Q Consensus 311 a~~lgl~Gp---~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd 387 (557)
+..+|+.+. .+.++.+|++++.||..|.++|++|.++.|||+|+|.+.... .+|+. +.++
T Consensus 139 ~~~LGl~~~~~~~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~---------------~~~~d--~~~~ 201 (387)
T 3oit_A 139 VPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYF---------------TGPDE--GCFR 201 (387)
T ss_dssp HHHHTCCTTCEEEEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGTC---------------CCCCS--SSCH
T ss_pred HHHhCCCCCcceeeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchhc---------------cCccc--cchH
Confidence 999999873 799999999999999999999999999999999999853110 00110 0011
Q ss_pred CCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecC--CCC-----CCC------CCCC-----hHHHHHHHHH
Q 008700 388 INRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSD--AYH-----MTE------PHPD-----GVGVILCIEK 449 (557)
Q Consensus 388 ~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d--~~~-----~~~------~~p~-----~~~~~~ai~~ 449 (557)
.....+++||||+|+||++.+. ........+.+.+.... ... ... .... ...+..++++
T Consensus 202 ~~~~~~lFGDGAaA~vl~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~ 278 (387)
T 3oit_A 202 TLLVQGLFGDGAAAVIVGADAD---DVERPLFEIVSAAQTIIPESDHALNMRFTERRLDGVLGRQVPGLIGDNVERCLLD 278 (387)
T ss_dssp HHHHHHHBCCEEEEEEEESSCC---SSCCCCEEEEEEEEEECTTCTTSEEEEECSSSEEEEECTTHHHHHHHHHHHHHHH
T ss_pred hhhcccccccceEEEEEecCCC---cccCCceEEEecccEEeCCChhhccceeecCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 1123678999999999987541 11112234444332111 100 000 0011 2345567888
Q ss_pred HHHHc----CCCCCCcc--EEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccc-cCcccccchhhhHHHHHHHHH
Q 008700 450 ALAHS----GVSREDVN--YINAHATSTPAGDIKEYQALIHCFGQN-RGLRVN-STKSMIGHLLGAAGAVEAIAV 516 (557)
Q Consensus 450 aL~~A----gl~~~dId--~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~-s~K~~iGH~~gAaG~~~li~~ 516 (557)
+|+++ |++ ||| ++..|-.+... .+++.+.++-. ..+..+ .+-..+||+.+|+=.+.|-.+
T Consensus 279 ~L~~~~~~~gl~--d~d~~~~v~Hq~n~~i-----l~~v~~~Lgl~~ek~~~s~~~l~~~GNtssAsip~~L~~~ 346 (387)
T 3oit_A 279 MFGPLLGGDGGG--GWNDLFWAVHPGSSTI-----MDQVDAALGLEPGKLAASRRVLSDYGNMSGATVIFALDEL 346 (387)
T ss_dssp HTGGGCC--------GGGSEEEECCCCHHH-----HHHHHHHHTCCTTTTHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHhhcccCCCC--cccccEEEECCCCHHH-----HHHHHHHcCCCHHHHHHHHHHHHHhCchHHhHHHHHHHHH
Confidence 88898 887 666 99999655553 45555556532 122211 123457999988866666553
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=147.68 Aligned_cols=223 Identities=18% Similarity=0.232 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .|++++..+ .......+.+|...|
T Consensus 62 ~~~la~~Aa~~aL~~ag~~~~dId-------~li~~t~t~-------------------------~~~~P~~a~~v~~~L 109 (350)
T 4ewp_A 62 VPVMAVGAAREALERAGLQGSDLD-------AVIVSTVTF-------------------------PHATPSAAALVAHEI 109 (350)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCS-------EEEEECSCC-------------------------SCSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeccC-------------------------CCCCCchHHHHHHHh
Confidence 456999999999999999998887 678877542 122344678899999
Q ss_pred CCCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
|++. +++.|+.+|++++.||..|..+|++|..+.+||+++|.+... +. +......+
T Consensus 110 Gl~~~~a~di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~s~~-----------~d------------~~~~~~~~ 166 (350)
T 4ewp_A 110 GATPAPAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLSDV-----------VD------------PTDRSISF 166 (350)
T ss_dssp TCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGG-----------CC------------TTCTTTGG
T ss_pred CCCCceEEEeecchhhHHHHHHHhhhhhhCCCccceeEeeeeeceec-----------cc------------cccccccc
Confidence 9964 889999999999999999999999999999999999984211 10 11223457
Q ss_pred eecCceEEEEEcchHHHHhcCCeeeEEEEEEE-Ee-----------------------cCCCCC------CC--CCCChH
Q 008700 394 VMGEGAGVLLLEELEHAKKRGAKIYAEFRGGS-FT-----------------------SDAYHM------TE--PHPDGV 441 (557)
Q Consensus 394 v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~-~~-----------------------~d~~~~------~~--~~p~~~ 441 (557)
++||||+|+||+..+. ..+...+.+.. .. .+.... .. ...++.
T Consensus 167 lfgDGA~A~vl~~~~~-----~~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 241 (350)
T 4ewp_A 167 LLGDGAGAVIVAASDE-----PGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGP 241 (350)
T ss_dssp GBCEEEEEEEEEEESS-----CCBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECHH
T ss_pred ccccchheeeeecccC-----CCccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehhH
Confidence 8999999999986432 11211111110 00 000000 00 011222
Q ss_pred --------HHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHH
Q 008700 442 --------GVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEA 513 (557)
Q Consensus 442 --------~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~l 513 (557)
.+.++++++|+++|++++|||++..|..+... .+++.+.++-...-.+...-..+||+.+|+=.+.|
T Consensus 242 ~v~~~a~~~~~~~i~~~L~~~gl~~~did~~v~Hq~~~~i-----~~~~~~~Lgl~~~~~~~~~l~~~GNtssasi~~~L 316 (350)
T 4ewp_A 242 SVFRWAVWSMAKVAREALDAAGVEPEDLAAFIPHQANMRI-----IDEFAKQLKLPESVVVARDIADAGNTSAASIPLAM 316 (350)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCCGGGEEEEEECCSCHHH-----HHHHHHHTTCCTTSEECCTHHHHCBCGGGHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHhhcCChhHhceEEecCCCHHH-----HHHHHHHcCcChHhEEecccccccchHHHHHHHHH
Confidence 24568999999999999999999999655543 34555556532111122222357999888766555
Q ss_pred HHHHHHHHcCCC
Q 008700 514 IAVVQAIRTGWI 525 (557)
Q Consensus 514 i~~~~~l~~~~l 525 (557)
.. .++++.+
T Consensus 317 ~~---~~~~g~~ 325 (350)
T 4ewp_A 317 HR---LLEENPE 325 (350)
T ss_dssp HH---HHHHCGG
T ss_pred HH---HHHhCCC
Confidence 44 3455554
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=143.38 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+.+|+++||+++|+++++|| .|++++.. + ......+.+|+..||
T Consensus 111 ~~La~~Aa~~AL~~agi~~~dId-------~li~~t~t-~-------------------------~~~P~~a~~v~~~LG 157 (465)
T 3e1h_A 111 VPLAVEASRKAMAEARLVPAQIT-------HMVSTTCT-D-------------------------SANPGYDHYVAKELG 157 (465)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSS-C-------------------------CCSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeeC-C-------------------------CCCCcHHHHHHHHhC
Confidence 47999999999999999998887 68888753 1 122346789999999
Q ss_pred CCC-C-eeee-cCCChhHHHHHHHHHHHHHc----CCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcC
Q 008700 316 WMG-P-NYSI-STACATSNFCILNAANHIIR----GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDI 388 (557)
Q Consensus 316 l~G-p-~~tv-~~aCaSgl~Al~~A~~~I~~----G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~ 388 (557)
++. + .+.| ..+|++++.||..|.++|++ |.++.|||+|+|.+...... ....... ..+.
T Consensus 158 l~~~~~~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~S~~~~~-~~~~~~~-------------~~~d 223 (465)
T 3e1h_A 158 LSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRS-ELESIDA-------------LQET 223 (465)
T ss_dssp CCTTCEEEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECCGGGHHH-HHHHHHH-------------HTCC
T ss_pred CCCCeeEEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeecchhcCc-ccccccc-------------cccc
Confidence 976 4 6888 79999999999999999997 99999999999995332211 1110000 0112
Q ss_pred CCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCC-------------CCCC-----hHHHHHHHHHH
Q 008700 389 NRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTE-------------PHPD-----GVGVILCIEKA 450 (557)
Q Consensus 389 ~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~-------------~~p~-----~~~~~~ai~~a 450 (557)
....+++||||+|+||++.+... .....+..+.+......+..... ..+. ...+..+++++
T Consensus 224 ~~t~~LFGDGAaAvVl~~~~~~~-~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~g~~V~~~a~~~v~~~i~~~ 302 (465)
T 3e1h_A 224 RIGIALFSDCASAVILSNGIGEA-PGKPAIYDLLGWENRVIPDSEHDLGFDVDPMGWKVVLSPRVPVLAKASLQPTYADL 302 (465)
T ss_dssp CCHHHHBCCEEEEEEEECCTTCC-TTCCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeEEEEEccCCCc-cccccceeeccceEEEecCCccccCccccCCCceEecChHHHHHHHHHHHHHHHHH
Confidence 23457799999999998753211 00122234555433221110000 0011 23456778888
Q ss_pred HHH-------cCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Ccccc-cCcccccchhhhHHHHHHHH
Q 008700 451 LAH-------SGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVN-STKSMIGHLLGAAGAVEAIA 515 (557)
Q Consensus 451 L~~-------Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~-s~K~~iGH~~gAaG~~~li~ 515 (557)
|++ +|++++||||+ +|-.+... ++++.+.++-.. .+..+ ..-..+||+.+|+=.+.|-.
T Consensus 303 L~~~g~~L~~agl~~~DId~~-~Hqan~rI-----l~~v~~~Lgl~~ek~~~s~~~l~~yGNtsSASip~aL~~ 370 (465)
T 3e1h_A 303 LSSLQDQLPSSYQKPADFDWA-MHPGGATI-----LSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNR 370 (465)
T ss_dssp HHHHGGGSCTTSCSGGGSEEE-ECCSSHHH-----HHHHHHHHTCCGGGGHHHHHHHHHHCBCGGGHHHHHHHH
T ss_pred HHhccccccccCCCHHHceEE-ecCCChHH-----HHHHHHHhCcCHHHhHHHHHHHhcceechHhHHHHHHHH
Confidence 887 67999999999 99554443 455555565321 11110 11123599988875544443
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=144.54 Aligned_cols=265 Identities=14% Similarity=0.124 Sum_probs=162.8
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
..|.|+|+|..+|.- .+.+++.+.+ |.+. .|-..... +.. ..+..+. .....|+.+|+
T Consensus 6 m~v~I~~~g~y~P~~~v~~~~l~~~~--g~~~-----~~~~~~~G------i~~---r~~~~~~-----e~~~~La~~Aa 64 (388)
T 3v4n_A 6 MTIGIDKISFFVPPYYIDMTALAEAR--NVDP-----GKFHIGIG------QDQ---MAVNPIS-----QDIVTFAANAA 64 (388)
T ss_dssp CCEEEEEEEEECCSEEEEHHHHHHHT--TSCT-----HHHHTTTC------CCE---EECCCTT-----CCHHHHHHHHH
T ss_pred eeEEEEEEEEECCCeEEcHHHHHHHh--CCCH-----HHHHHHhC------ceE---EEECCCC-----CCHHHHHHHHH
Confidence 369999999999996 6777765543 2110 00000000 000 0000111 12467999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC--Cee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PNY 321 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G--p~~ 321 (557)
++||+++| +++|| .|++++..+. ......+..++..||+.+ +.+
T Consensus 65 ~~aL~~a~--~~~Id-------~li~~t~t~~-------------------------~~~ps~a~~v~~~LGl~~~~~~~ 110 (388)
T 3v4n_A 65 EAILTKED--KEAID-------MVIVGTESSI-------------------------DESKAAAVVLHRLMGIQPFARSF 110 (388)
T ss_dssp HTTCCHHH--HHHEE-------EEEEECSSCS-------------------------BSSSCHHHHHHHHTTCCSSCEEE
T ss_pred HHHHHhCC--cccCC-------EEEEEeccCC-------------------------CcCccHHHHHHHHcCCCCCceEe
Confidence 99999987 66666 6888875421 112346788999999975 899
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGV 401 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaa 401 (557)
.+..+|++++.||..|.++|++|.++.|||+|+|.+... ++ ..+..+.||||+|
T Consensus 111 dv~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~~-------------------------~~-~~~~~lfGDGA~A 164 (388)
T 3v4n_A 111 EIKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKYG-------------------------LN-SGGEPTQGAGAVA 164 (388)
T ss_dssp EEESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECCC-------------------------TT-CTTGGGCEEEEEE
T ss_pred ehhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhccc-------------------------CC-CCCCCccccceeE
Confidence 999999999999999999999999999999999984211 11 1225779999999
Q ss_pred EEEcchHHHHhcCCeeeEEEEE-EEEecCCCCCCCC------CCCh--------HHHHHHHHHHHHHcCCCCCCccEEEE
Q 008700 402 LLLEELEHAKKRGAKIYAEFRG-GSFTSDAYHMTEP------HPDG--------VGVILCIEKALAHSGVSREDVNYINA 466 (557)
Q Consensus 402 lvLe~~~~A~~~G~~i~a~I~G-~~~~~d~~~~~~~------~p~~--------~~~~~ai~~aL~~Agl~~~dId~ve~ 466 (557)
+||++.+ .+.....+ .+...+......| ..++ ..+..+++++|+++|++++|||++..
T Consensus 165 ~ll~~~~-------~il~~~~~~~~~~~~~~df~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~g~~~~did~~v~ 237 (388)
T 3v4n_A 165 MLVSSEP-------RILALKEDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAF 237 (388)
T ss_dssp EEEEESC-------SSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHCCCGGGCSEEEE
T ss_pred EEeecCC-------CceEEeccccccchhccccccCCCCCCceeccHhHHHHHHHHHHHHHHHHHHHhCCCHHHCCEEEe
Confidence 9998732 12211101 1111121110111 1122 34567889999999999999999999
Q ss_pred cCCCCccCcHHHH-------HHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHH
Q 008700 467 HATSTPAGDIKEY-------QALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQ 518 (557)
Q Consensus 467 hgtgt~~~D~~E~-------~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~ 518 (557)
|-..+.+.-..-. +.+.+.++-... .....-..+||+.+|+=.+.|..++.
T Consensus 238 Hqp~~k~~~ka~~ril~~~~~~~~~~l~~~~e-~~~~~~~~~GN~~sASi~l~L~~~l~ 295 (388)
T 3v4n_A 238 HIPYTKMGKKALLAKISDQTEAEQERILARYE-ESIIYSRRVGNLYTGSLYLGLISLLE 295 (388)
T ss_dssp CCSSHHHHHHHHHHHSTTSCHHHHHHHHHHHH-HHTTTGGGTCCCGGGHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHhcccHHHHHHhCCCHH-HHhhHHHhcCchHHHHHHHHHHHHHH
Confidence 9755442211100 122222221100 11223456899999987776666543
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-12 Score=128.11 Aligned_cols=226 Identities=18% Similarity=0.181 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||++||+++++|| .|++|+... . ...+..++..+
T Consensus 55 ~sdLa~~Aa~~AL~~AGi~~~DID-------~II~gt~t~---------------------q-------~~~A~~va~~L 99 (347)
T 3lma_A 55 ERKLMEDAVQSALSKQNLKKEDID-------IFLAGDLLN---------------------Q-------NVTANYVARHL 99 (347)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGGCS-------EEEEEESSS---------------------S-------STTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCC-------EEEEEeCCC---------------------c-------hhHHHHHHHHh
Confidence 467999999999999999999888 688887531 0 11455666666
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
+ -|.+.|+.+|+|++.||..|..+|++|.++.|||+|+|.+........|.. ..+..+|.. -..
T Consensus 100 g--ipafdV~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S~aerq~r~p~----------e~g~q~p~t----a~~ 163 (347)
T 3lma_A 100 K--IPFLCLFGACSTSMESIAISSALIDGGFAKRALAATSSHNATAERQFRYPT----------EYGGQKPGT----ATS 163 (347)
T ss_dssp C--CCEEEBCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTTCCC------------------------------
T ss_pred C--CCEEEecChhHHHHHHHHHHHHHHhcCCCCEEEEEEeccccchhhhccCcc----------hhcccCCch----hcE
Confidence 4 489999999999999999999999999999999999998654421111100 011122221 123
Q ss_pred ecCceEEEEEcchHHHHhcCCeeeEEEEEEEEe--cCCCCCCCCCCCh----HHHHHHHHHHHHHcCCCCCCccEEEEcC
Q 008700 395 MGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFT--SDAYHMTEPHPDG----VGVILCIEKALAHSGVSREDVNYINAHA 468 (557)
Q Consensus 395 ~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~--~d~~~~~~~~p~~----~~~~~ai~~aL~~Agl~~~dId~ve~hg 468 (557)
.++||||+||++.. .+ + .|.+.... .| +....+...+ +...++|.+.|+++|++|+|+|+|..++
T Consensus 164 t~dGAGA~VL~~~g----~~--p--~I~~~t~Gkvvd-~g~~d~~nmg~amaPaA~~ti~~~l~d~g~~~~d~D~ivtgd 234 (347)
T 3lma_A 164 TVTGSGAVVLSQQP----GG--I--KITSATVGRVID-LGITDSQDMGSAMAPAAADTIKQHLEDLGRTPDDYDLILTGD 234 (347)
T ss_dssp CCCEEEEEEEESSC----CS--E--EEEEEECCCCBC-CSCCCTTCHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEES
T ss_pred EccceeEEEEEecC----CC--C--ceeeeeeeeeec-cCCCCCCCccccchHHHHHHHHHHHHHhCCCHHHcCEEecCC
Confidence 46899999999642 12 2 24443321 12 1222332222 3445778999999999999999999754
Q ss_pred CCCccCcHHHHHHHHHHhcCCC----C------cccccCcccc---cchhhhHHHHHHHHHHHHHHcCCC
Q 008700 469 TSTPAGDIKEYQALIHCFGQNR----G------LRVNSTKSMI---GHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 469 tgt~~~D~~E~~Al~~~~~~~~----~------~~v~s~K~~i---GH~~gAaG~~~li~~~~~l~~~~l 525 (557)
.+.. -..-+.+++.+.. + +.+......+ |---|.+.++-.-..+..|++|.+
T Consensus 235 L~q~-----g~~il~~l~~~~g~~~~~~~~dcg~~iy~~~~~~~~ggsg~~csa~v~~~~~~~~~~~g~~ 299 (347)
T 3lma_A 235 LSGV-----GSPILKDLLKEEGINVGTKHNDCGLMIYTPDQQVFAGGSGCACSAVVTFAHIFKEIEAGRL 299 (347)
T ss_dssp CHHH-----HHHHHHHHHHHTTCCCGGGEEEGGGTSSCC---------CCCCHHHHHHHTHHHHHHTTSC
T ss_pred hHHH-----HHHHHHHHHHHcCCChhHCccccceEEecCCCcccCCCCccccHHHHHHHHHHHHHhcCcc
Confidence 3222 1222555554221 1 1121211111 112245556666667778887765
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=128.07 Aligned_cols=214 Identities=13% Similarity=-0.007 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHh
Q 008700 234 KFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 313 (557)
Q Consensus 234 ~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~ 313 (557)
....|+.+|+++||+++|+++++|| .|++++..+ + .....+.+++..
T Consensus 136 ~~~~La~~Aa~~AL~~agi~~~dId-------~li~~t~t~---------------------~-----~~P~~a~~v~~~ 182 (413)
T 3v7i_A 136 AVQAYGERAARGALQIAGLDVADVD-------CLITSNSTT---------------------P-----ALPGLDVALANR 182 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECCSS---------------------C-----CSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcCHHHCC-------EEEEEccCC---------------------C-----CcCHHHHHHHHH
Confidence 4567999999999999999998887 688887642 1 123467889999
Q ss_pred hCCCC--Ceeee-cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCC
Q 008700 314 LGWMG--PNYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINR 390 (557)
Q Consensus 314 lgl~G--p~~tv-~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~ 390 (557)
+|+.. +.+.| +.+|++++.||..|.++|++|.++.|||+|+|.+.... . ++...
T Consensus 183 LGl~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~S~~~----------------------~-~~d~~ 239 (413)
T 3v7i_A 183 LPLRGDTMLLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTY----------------------Q-PADDT 239 (413)
T ss_dssp TTCCTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECGGGGC----------------------C-SSCCS
T ss_pred hCCCCCceEEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEecccccc----------------------C-ccccc
Confidence 99976 46778 99999999999999999999999999999999853211 0 11111
Q ss_pred C-----CceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCC-------------CCCCC----hHHHHHHHH
Q 008700 391 D-----GFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMT-------------EPHPD----GVGVILCIE 448 (557)
Q Consensus 391 d-----G~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~-------------~~~p~----~~~~~~ai~ 448 (557)
. ..++||||+|+||++.+.. . ...+|.+........... ..... -..+..+++
T Consensus 240 ~~~lv~~~LFGDGAaAvvl~~~~~~----~-~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~v~~~v~~~~~~i~ 314 (413)
T 3v7i_A 240 LESLIVRLLFADTAVAAVVTGRPRP----E-SVLRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPRAVQETVTAMW 314 (413)
T ss_dssp TTHHHHHHHBCCEEEEEEEESSCCT----T-EEEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHH
T ss_pred hhhhhcceeeccccEEEEEEecCCC----C-CCEEEEccccEEeCCCccccCccccCCceEEEECcHHHHHHHHHHHHHH
Confidence 1 5679999999999874321 1 112344433211110000 00011 123556788
Q ss_pred HHHH------HcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhc--CC-CCcc-cccCcccccchhhhHHHHHHHHHH
Q 008700 449 KALA------HSGVSREDVNYINAHATSTPAGDIKEYQALIHCFG--QN-RGLR-VNSTKSMIGHLLGAAGAVEAIAVV 517 (557)
Q Consensus 449 ~aL~------~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~--~~-~~~~-v~s~K~~iGH~~gAaG~~~li~~~ 517 (557)
++|+ ++|++ ||++..|-.+.. =++++.+.++ -. ..+. ....-. +||+.+|+=.+.|-.++
T Consensus 315 ~~L~~~~~~~~~gl~---id~~v~Hq~~~~-----il~~v~~~Lg~~l~~ek~~~s~~~l~-~GNtssAsi~~~L~~~~ 384 (413)
T 3v7i_A 315 EWLRVRYEDDPSSWH---PDVLLAHPGGTR-----VLEYMEQTMPDEWPSGLLSYSRDSYT-SGNRGGAAVFDILRRAH 384 (413)
T ss_dssp HHHHHHTSSSCTTCC---CCEEEEECSSHH-----HHHHHHHHSCSSCCSCSTHHHHHHHT-TCBCGGGHHHHHHHHHH
T ss_pred HHHhhccccccCCCc---eeEEEECCCChH-----HHHHHHHHhCCCCCHHHhhccceEec-eeChHHHHHHHHHHHHH
Confidence 9999 88987 999999965544 3456666676 22 1221 022334 89999888766665554
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=131.21 Aligned_cols=225 Identities=16% Similarity=0.165 Sum_probs=140.2
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
.|.|.|+|..+|.- .+.+++.+.+ |.+. .+-..+. | +..+ .+..+. .....|+.+|++
T Consensus 24 ~vgI~aig~y~P~~~v~~~el~~~~--g~~~-----~~~~~~~-----G-i~~r---~~~~~~-----e~~~~La~~Aa~ 82 (478)
T 2p8u_A 24 DVGIVALEIYFPSQYVDQAELEKYD--GVDA-----GKYTIGL-----G-QAKM---GFCTDR-----EDINSLCMTVVQ 82 (478)
T ss_dssp CCEEEEEEEECCSEEEEHHHHHHHH--TCCT-----TCCCCCC-----C-CCEE---ECCCTT-----CCHHHHHHHHHH
T ss_pred ceEEEEEEEECCCeEecHHHHHHHh--CCCh-----hHheccc-----C-ceEE---EeCCCC-----CCHHHHHHHHHH
Confidence 58999999999986 6777776553 2210 1100000 0 0000 000111 124689999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCC---C-CCe
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGW---M-GPN 320 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl---~-Gp~ 320 (557)
+||+++|+++++|+ .|++++..+. ......+..+...|+. . -+.
T Consensus 83 ~aL~~agi~~~dId-------~li~~T~t~~-------------------------~~~ps~a~~v~~~L~~lG~~~~~~ 130 (478)
T 2p8u_A 83 NLMERNNLSYDCIG-------RLEVGTETII-------------------------DKSKSVKTNLMQLFEESGNTDIEG 130 (478)
T ss_dssp HHHHHTTCCGGGEE-------EEEEECSCCS-------------------------CSSSCHHHHHGGGTTTTTCCCCBC
T ss_pred HHHHHcCCCHHHCC-------EEEEEccCCc-------------------------ccCccHHHHHHHHHhhcCCCCceE
Confidence 99999999998776 5788875421 1123356677755444 3 378
Q ss_pred eeecCCChhHHHHHHHHHHHHHcCC--CCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCc
Q 008700 321 YSISTACATSNFCILNAANHIIRGE--ANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEG 398 (557)
Q Consensus 321 ~tv~~aCaSgl~Al~~A~~~I~~G~--~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEG 398 (557)
+.|..+|++++.||..|.++|++|. .+.|||+|+|... |.......+.|||
T Consensus 131 ~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia~---------------------------~~~~~~~~~fGdG 183 (478)
T 2p8u_A 131 IDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAV---------------------------YATGNARPTGGVG 183 (478)
T ss_dssp CEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEEC---------------------------CCSSTTGGGCEEE
T ss_pred EEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeeec---------------------------ccCCCCCCcccce
Confidence 8899999999999999999999999 9999999999510 1112234679999
Q ss_pred eEEEEEcchHHHHhcCCeeeEE-EEEEEEecCCCCCCCC-------CCChHHH-----------HHHHHHHHH-------
Q 008700 399 AGVLLLEELEHAKKRGAKIYAE-FRGGSFTSDAYHMTEP-------HPDGVGV-----------ILCIEKALA------- 452 (557)
Q Consensus 399 AaalvLe~~~~A~~~G~~i~a~-I~G~~~~~d~~~~~~~-------~p~~~~~-----------~~ai~~aL~------- 452 (557)
|+|+||++.+. + ++.. +.|..+ .+......| ..++... ...+++.++
T Consensus 184 A~A~Ll~~~~~----~--~l~~~~~gs~~-~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~~l~~~~~~~~ 256 (478)
T 2p8u_A 184 AVALLIGPNAP----L--IFERGLRGTHM-QHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEG 256 (478)
T ss_dssp EEEEEEESSCS----E--EECTTCCEEEE-CCCCSEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEecCCC----c--eEeeccceecc-cchhheeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999986421 0 1000 122211 122221112 1222111 134566666
Q ss_pred -HcCCCCCCccEEEEcCCCCccCcHH
Q 008700 453 -HSGVSREDVNYINAHATSTPAGDIK 477 (557)
Q Consensus 453 -~Agl~~~dId~ve~hgtgt~~~D~~ 477 (557)
++|++++|||++..|..+..+.+..
T Consensus 257 ~~~g~~~~did~~v~H~~~~ki~~~~ 282 (478)
T 2p8u_A 257 NDKDFTLNDFGFMIFHSPYCKLVQKS 282 (478)
T ss_dssp CCCCCCGGGCSEEEECCSSHHHHHHH
T ss_pred cccCCChHHcCEEEecCCcHHHHHHH
Confidence 6799999999999998877765544
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.3e-10 Score=118.81 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=133.6
Q ss_pred CcEEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 165 ~~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
+.|-|+|+|..+|.- .+.+++.+.+ |.+ +.| +..+.+ +. ...+.++.| ....|+.+|+
T Consensus 4 ~~VgI~~~g~y~P~~~v~~~~l~~~~--~~~-----~~~----i~~~~G--i~---~r~~~~~~E-----~~~~ma~~Aa 62 (460)
T 2wya_A 4 KDVGILALEVYFPAQYVDQTDLEKYN--NVE-----AGK----YTVGLG--QT---RMGFCSVQE-----DINSLCLTVV 62 (460)
T ss_dssp SSCEEEEEEEECCSEEEEHHHHHHHT--TCC-----TTC----CCCCCC--CC---EEECCCTTC-----CHHHHHHHHH
T ss_pred CceEEEEEEEECCCeEEcHHHHHHHh--CCC-----HHH----HHHhhC--cE---EEEECCCCC-----CHHHHHHHHH
Confidence 458999999999997 6777765432 211 011 111100 00 000011222 2356999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC----C
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG----P 319 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G----p 319 (557)
++||+++|+++++|| -|++++..+. ......+..+...||+.| +
T Consensus 63 ~~al~~a~i~~~~Id-------~ii~aT~t~~-------------------------~~~ps~a~~v~~~l~~~g~~~~~ 110 (460)
T 2wya_A 63 QRLMERIQLPWDSVG-------RLEVGTETII-------------------------DKSKAVKTVLMELFQDSGNTDIE 110 (460)
T ss_dssp HHHHHHHTCCGGGEE-------EEEEECSCCS-------------------------CSSSCHHHHHGGGTGGGTCCCCB
T ss_pred HHHHHHcCCCHHHCC-------EEEEEeCCCC-------------------------CCCCchHHHHHHHHhccCCCCee
Confidence 999999999998776 5888876421 122335677888887654 4
Q ss_pred eeeecCCChhHHHHHHHHHHHHHcCCCCE--EEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecC
Q 008700 320 NYSISTACATSNFCILNAANHIIRGEANV--MLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGE 397 (557)
Q Consensus 320 ~~tv~~aCaSgl~Al~~A~~~I~~G~~d~--aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gE 397 (557)
++-+..+|++++.||..|.++|++|..+. +|++..+. .. |.........|+
T Consensus 111 a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~--~~-------------------------~~d~~~~~~~Gd 163 (460)
T 2wya_A 111 GIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDI--AV-------------------------YPSGNARPTGGA 163 (460)
T ss_dssp CCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEE--EC-------------------------CCSSTTGGGCEE
T ss_pred EechhhhhhhHHHHHHHHHHHHHhccccceEEEEEeccc--cc-------------------------cccccccccCcc
Confidence 68899999999999999999999998764 44433332 00 222234456799
Q ss_pred ceEEEEEcchHHHHhcCCeeeEEE---EEEEEecCCCC-------CCCCCCChH-------------------HHHHHHH
Q 008700 398 GAGVLLLEELEHAKKRGAKIYAEF---RGGSFTSDAYH-------MTEPHPDGV-------------------GVILCIE 448 (557)
Q Consensus 398 GAaalvLe~~~~A~~~G~~i~a~I---~G~~~~~d~~~-------~~~~~p~~~-------------------~~~~ai~ 448 (557)
||+|++++..+. + ..+ .+... .+... ...+..++. ....+++
T Consensus 164 GA~A~l~~~~~~-------~-~~~~~~~~~~~-~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g~~v~~~~~~~~~~~~~ 234 (460)
T 2wya_A 164 GAVAMLIGPKAP-------L-ALERGLRGTHM-ENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWK 234 (460)
T ss_dssp EEEEEEEESSCS-------E-EECTTCCEEEE-CCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhcccCCc-------c-eeecccccccc-cchhhhhccCCCCCCcccCCccchHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999986432 1 111 11111 11111 111111221 1223455
Q ss_pred HHHHHcCCCCCCccEEEEcCCCCcc
Q 008700 449 KALAHSGVSREDVNYINAHATSTPA 473 (557)
Q Consensus 449 ~aL~~Agl~~~dId~ve~hgtgt~~ 473 (557)
++++++|++++|+|++..|.....+
T Consensus 235 ~~l~~~~~~~~d~d~~v~Hqp~~r~ 259 (460)
T 2wya_A 235 QAGSDRPFTLDDLQYMIFHTPFCKM 259 (460)
T ss_dssp HTTCCCCCCGGGCSEEEECCSSHHH
T ss_pred HHHHHcCCCHHHHhhhhhcccchHH
Confidence 6677789999999999999876654
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=96.82 E-value=7.4e-05 Score=61.10 Aligned_cols=42 Identities=7% Similarity=0.004 Sum_probs=36.4
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhh
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATL 125 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~ 125 (557)
..+|.+| ||||++|||||+|.+..|+. ++.+.+|. +|...+.
T Consensus 30 ~~~l~dLG~DSL~aVELr~~Le~~fgi~-----lp~~~l~~-~Ti~~La 72 (91)
T 2cg5_B 30 DSSLADLGLDALMSVEVRQTLERELNLV-----LSVREVRQ-LTLRKLQ 72 (91)
T ss_dssp TSBTTTTTCCHHHHHHHHHHHHHHHCCC-----CCHHHHHT-CBHHHHH
T ss_pred CCCHHHhCCcchHHHHHHHHHHHHHCCC-----CCHHHHHh-CCHHHHH
Confidence 5789999 99999999999999999999 99999988 4655443
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0004 Score=56.85 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=43.0
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHH
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQR 130 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~ 130 (557)
.+..|.+| +|||.++|+++++....|.. ++.+.+|++||...+..+...
T Consensus 43 ~~~~f~~lG~DSL~a~~l~~~l~~~~g~~-----l~~~~l~~~~ti~~la~~l~~ 92 (95)
T 2ju1_A 43 ATTPFKELGFDSLAAVRLRNLLNAATGLR-----LPSTLVFDHPNASAVAGFLDA 92 (95)
T ss_dssp SSSCHHHHTCSSHHHHHHHHHHGGGTSSC-----CCTTHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHHHCCC-----CChhHHhcCCCHHHHHHHHHH
Confidence 46789999 99999999999999998887 999999999999877766543
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0024 Score=51.08 Aligned_cols=49 Identities=8% Similarity=-0.048 Sum_probs=42.6
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHH
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQR 130 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~ 130 (557)
....|.+| +|||.++|++++|....|.. ++.+.+|++||...+..+...
T Consensus 36 ~~~~~~~lG~DSl~~~~l~~~l~~~~~~~-----i~~~~~~~~~ti~~la~~l~~ 85 (88)
T 2afd_A 36 MEESFDNYDLNSSKALILLGRLEKWLGKE-----LNPVLIFNYPTIAQLAKRLGE 85 (88)
T ss_dssp TTSCGGGTTCCSTHHHHHHHHHHHHTTSC-----CCGGGTTTCCSHHHHHHHHHH
T ss_pred CCCCHHHcCccHHHHHHHHHHHHHHHCCC-----cCHHHHHhCCCHHHHHHHHHH
Confidence 36789999 99999999999999998887 999999999999877665543
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.004 Score=50.07 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=41.7
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCcc--ccccCCCCchhhhhHHH
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGF--SSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~--~l~f~~p~~~a~~~~~~ 129 (557)
....|.+| +|||.++|++++|....|.. ++. ..+|++||...+.....
T Consensus 33 ~~~~~~~lG~DSL~~~~l~~~l~~~~g~~-----l~~~~~~l~~~~Tv~~la~~l~ 83 (89)
T 2kr5_A 33 DDSNFADMGIDSLSSMVIGSRFREDLGLD-----LGPEFSLFIDCTTVRALKDFML 83 (89)
T ss_dssp TTCBHHHHTCCHHHHHHHHHHHHHTTCCC-----CCSSCCTTTSCCBHHHHHHHHH
T ss_pred CCCCHHHcCccHHHHHHHHHHHHHHHCCC-----CCchHHHHHcCCCHHHHHHHHH
Confidence 36789999 99999999999999998887 888 89999999987665543
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.0043 Score=50.83 Aligned_cols=50 Identities=6% Similarity=-0.057 Sum_probs=43.1
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
....|.+| +|||.++|++++|....|.. ++...+|++||...+..+...+
T Consensus 43 ~~~~~~~lG~DSl~~~~l~~~l~~~~g~~-----l~~~~l~~~~ti~~la~~l~~~ 93 (99)
T 2liu_A 43 EDQKFVDLGLDSIVGVEWTTTINQTYNLN-----LKATKLYDYPTLLELSGYIAQI 93 (99)
T ss_dssp SSSCHHHHTCCHHHHHHHHHHHHHHHTCC-----CCHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCCHHHhCccHHHHHHHHHHHHHHHCCC-----cCHHHHHhCCCHHHHHHHHHHH
Confidence 35789999 99999999999999998887 9999999999998777665443
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.0074 Score=57.13 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=44.2
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
....|.+| +|||+++||+++|....|+. ++.+.+|++||...+.......
T Consensus 48 ~~~~f~~lG~DSl~~~el~~~l~~~~g~~-----l~~~~~~~~~Ti~~la~~l~~~ 98 (212)
T 2l22_A 48 DGSRFLELGLDSVIAAQWIREINKHYQLK-----IPADGIYTYPVFKAFTQWVGTQ 98 (212)
T ss_dssp TTCBHHHHTCCHHHHHHHHHHHHHHTTCC-----CCTTHHHHCCBHHHHHHHHHTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCCC-----CCHHHHHcCCCHHHHHHHHHHh
Confidence 36789999 99999999999999998887 9999999999999877776554
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.0035 Score=51.14 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=43.6
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
....|-+| .|||++++|.++|....|.. ++...+|++||...++......
T Consensus 36 ~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~-----l~~~~l~~~pTi~~la~~l~~~ 86 (93)
T 4i4d_A 36 PHEDFAALGGNSIHAIXITNRVEELVDAE-----LSIRVLLETRTVAGMTDHVHAT 86 (93)
T ss_dssp TTCCTTTTTCCHHHHHHHHHHHHHHHTSC-----CCHHHHHHHCSHHHHHHHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHHhCCC-----CCHHHHHcCCCHHHHHHHHHHH
Confidence 46788899 99999999999999998887 9999999999999777766554
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.015 Score=47.64 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=43.9
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
.+..|.+| +|||..+||..+|....|+. ++...+|+++|...+......+
T Consensus 30 ~d~~~~dlG~DSL~~vel~~~le~~fgi~-----i~~~~l~~~~Tv~~l~~~i~~~ 80 (95)
T 1nq4_A 30 EDVAFDALGYDSLALLNTVGRIERDYGVQ-----LGDDAVEKATTPRALIEMTNAS 80 (95)
T ss_dssp SSSCHHHHTCCSHHHHHHHHHHHHHTCCC-----SCTTHHHHCCSHHHHHHHHHHH
T ss_pred CCCChhhhCCCHHHHHHHHHHHHHHHCCc-----cCHHHHHcCCCHHHHHHHHHHH
Confidence 35788999 99999999999999999998 9998999999998877766554
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.011 Score=48.04 Aligned_cols=47 Identities=6% Similarity=-0.082 Sum_probs=40.6
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHH
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRR 128 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~ 128 (557)
....|-+| .|||++++|+++|....|.. ++...+|++||...++...
T Consensus 34 ~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~-----l~~~~l~~~~Ti~~la~~i 81 (91)
T 1dny_A 34 ILDNFFQIGGHSLKAMAVAAQVHREYQVE-----LPLKVLFAQPTIKALAQYV 81 (91)
T ss_dssp SSCCTTSSCCSSHHHHHHHHHHHHHCCCC-----CCHHHHHHSCSHHHHHHHH
T ss_pred CCCCHHHcCCCHHHHHHHHHHHHHHHCCC-----CCHHHHHcCCCHHHHHHHH
Confidence 35678899 99999999999999998877 8999999999998666543
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.036 Score=52.27 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=43.2
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
...|.+| +|||.++||+++|....|.. ++.+.+|++||...+......+
T Consensus 153 ~~~f~~lG~DSl~a~el~~~l~~~~g~~-----l~~~~l~~~~Ti~~La~~l~~~ 202 (212)
T 2l22_A 153 GAQFLDLGMDSVTGTQWMRGVSRHFSIQ-----LAADAIYTWPTLKSLADEVDRR 202 (212)
T ss_dssp SCCGGGGCSSSHHHHHHHHHHHHHTTCC-----CCGGGGGGCCSHHHHHHHHHHH
T ss_pred CCCHHHhCCCHHHHHHHHHHHHHHHCCC-----cCHHHHHcCCCHHHHHHHHHHH
Confidence 5678899 99999999999999998887 9999999999999877766554
|
| >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.078 Score=41.19 Aligned_cols=47 Identities=9% Similarity=-0.140 Sum_probs=40.1
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
+..| .+| +|||.++|+.++|....|.. .+...+++++|...+.....
T Consensus 27 ~~~l~~~lG~DSl~~~~l~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~ 75 (79)
T 2l3v_A 27 GASFIDDLGADSLDTVELVMAFEEEFGVE-----IPDDAAETILTVGDAVKFID 75 (79)
T ss_dssp TCCHHHHTCCCSSSSSSTTTTHHHHTTCC-----CCHHHHTTCSSSSTTHHHHH
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHCCC-----CCHHHHHHcCCHHHHHHHHH
Confidence 5678 899 99999999999999998888 88888899999886665543
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=89.95 E-value=0.031 Score=44.13 Aligned_cols=46 Identities=9% Similarity=-0.076 Sum_probs=40.1
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHH
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRR 128 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~ 128 (557)
+..|.+| +|||..+||+++|....|.. .+...+++++|...+....
T Consensus 30 ~~~~~dlG~DSL~~vel~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i 76 (83)
T 1or5_A 30 DTPFVDLGYDSLALLETAAVLQQRYGIA-----LTDETVGRLGTPRELLDEV 76 (83)
T ss_dssp SSCHHHHSCCHHHHHHHHHHHHTTSCCC-----CSHHHHHHCCCSHHHHHHH
T ss_pred CCcHHHhCCCHHHHHHHHHHHHHHHCCc-----cCHHHHhccCCHHHHHHHH
Confidence 4569999 99999999999999999988 8888889999988666554
|
| >1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=0.11 Score=41.18 Aligned_cols=49 Identities=8% Similarity=-0.093 Sum_probs=41.4
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
+..|.+| +|||..+||.++|....|.. .+...+++++|...+......+
T Consensus 32 ~~~l~dlG~DSL~~vel~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~~~ 81 (86)
T 1af8_A 32 DLRFEDIGYDSLALMETAARLESRYGVS-----IPDDVAGRVDTPRELLDLINGA 81 (86)
T ss_dssp TTSTTTTTCCTTTHHHHHHHHTTTTCSC-----CCTTTTTTCCSHHHHHHHHHHH
T ss_pred CCChhhcCCCHHHHHHHHHHHHHHHCCC-----cCHHHHHcCCCHHHHHHHHHHH
Confidence 5678899 99999999999999999988 8888889999988776655443
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=89.13 E-value=0.089 Score=41.26 Aligned_cols=48 Identities=6% Similarity=-0.135 Sum_probs=40.6
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHH
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQR 130 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~ 130 (557)
+..|.+| +|||..+||.++|....|.. .+...+++++|...+......
T Consensus 28 ~~~l~dlG~DSl~~vel~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~~ 76 (82)
T 2ava_A 28 DSEFSKLGADSLDTVEIVMNLEEEFGIN-----VDEDKAQDISTIQQAADVIEG 76 (82)
T ss_dssp SCCSCCCTTCCSCHHHHHHHHHHHTTCC-----CCGGGSSSCCSHHHHHHHHHH
T ss_pred CCchhhcCCCHHHHHHHHHHHHHHHCCc-----cCHHHHHhCCCHHHHHHHHHH
Confidence 4667799 99999999999999999988 888888999998877655443
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=88.92 E-value=0.046 Score=42.44 Aligned_cols=47 Identities=11% Similarity=-0.077 Sum_probs=40.0
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
+..| .+| +|||.++||.++|....|.. .+...+++++|...+.....
T Consensus 26 ~~~l~~dlG~DSl~~~el~~~le~~fgi~-----i~~~~l~~~~Tv~~l~~~i~ 74 (78)
T 1l0i_A 26 NASFVEDLGADSLDTVELVMALEEEFDTE-----IPDEEAEKMTTVQAAIDYIN 74 (78)
T ss_dssp TCBTTTTSCCCHHHHHHHHHHHHHHHTCC-----CCHHHHTTCCBHHHHHHHHH
T ss_pred CcchhhhcCCCHHHHHHHHHHHHHHhCCC-----CCHHHHHHcCCHHHHHHHHH
Confidence 5567 699 99999999999999999988 88888899999886665543
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=88.80 E-value=0.046 Score=42.15 Aligned_cols=48 Identities=8% Similarity=-0.112 Sum_probs=40.6
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQR 130 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~ 130 (557)
+..| .+| +|||.++|+++++....|.. .+...+++++|...+......
T Consensus 24 ~~~l~~~lG~DSl~~~~l~~~le~~~gi~-----i~~~~~~~~~tv~~l~~~i~~ 73 (77)
T 2ehs_A 24 EAKFVEDLGADSLDVVELIMAFEEEFGIE-----IPDEDAEKIQTVGDVINYLKE 73 (77)
T ss_dssp TCBTTTTTCCCHHHHHHHHHHHHHHHTCC-----CCHHHHHTCCBHHHHHHHHHH
T ss_pred ccchhhccCCCHHHHHHHHHHHHHHhCCc-----cCHHHHHHcCCHHHHHHHHHH
Confidence 5678 899 99999999999999998888 888888999998866655443
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.098 Score=52.03 Aligned_cols=33 Identities=6% Similarity=-0.030 Sum_probs=8.3
Q ss_pred hhcccCcccccccccccccccCCCCCccccccCCCCch
Q 008700 85 MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNST 122 (557)
Q Consensus 85 ~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~ 122 (557)
.|||+|++|++|+.+.+|+. ++...+|++||..
T Consensus 2 GdSL~a~~l~~rl~~~~g~~-----l~~~~lf~~pt~~ 34 (316)
T 2px6_A 2 SHNLACPTPKEDGLAQQQTQ-----LNLRSLLVNPEGP 34 (316)
T ss_dssp -----------------------------CCCCCTTSC
T ss_pred CchHHHHHHHHHHHHHHhhc-----cchhhhhcCCCcC
Confidence 38999999999999999988 9999999999886
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=87.99 E-value=0.11 Score=40.49 Aligned_cols=47 Identities=6% Similarity=-0.157 Sum_probs=39.8
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
+..| .+| +|||.++|+.++|....|.. .+...+++++|...+.....
T Consensus 29 ~~~l~~dlG~DSl~~~el~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~ 77 (81)
T 2lol_A 29 DSRFIEDLKADSLDTVELMMAIEVEYGID-----IPDDEATKIKTVSDVIKYIK 77 (81)
T ss_dssp TCCHHHHTTCCHHHHHHHHHHHHHHHCCC-----CCGGGGGGSSSHHHHHHHHH
T ss_pred CCcHHHhcCCcHHHHHHHHHHHHHHHCCC-----CCHHHHHHcCCHHHHHHHHH
Confidence 4567 799 99999999999999999988 88888899999886665543
|
| >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.60 E-value=0.068 Score=43.89 Aligned_cols=49 Identities=6% Similarity=-0.166 Sum_probs=42.0
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
+..| .+| +|||..+||.++|....|.. ++...+++++|...+......+
T Consensus 38 d~~l~~dlG~DSL~~vel~~~le~~fgi~-----i~~~~l~~~~Tv~~l~~~i~~~ 88 (99)
T 2dnw_A 38 NSHFMKDLGLDSLDQVEIIMAMEDEFGFE-----IPDIDAEKLMCPQEIVDYIADK 88 (99)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHTTCC-----CCHHHHTTCCSHHHHHHHHHHH
T ss_pred CCchhhhcCCCHHHHHHHHHHHHHHHCCC-----CCHHHHHhCCCHHHHHHHHHHH
Confidence 4566 699 99999999999999999988 8888899999998777766554
|
| >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.65 E-value=0.072 Score=41.40 Aligned_cols=47 Identities=6% Similarity=-0.155 Sum_probs=39.7
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
+..| .+| +|||.++|+.+++....|.. .+...+++++|...+.....
T Consensus 28 ~~~l~~~lG~DSl~~~~l~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~ 76 (80)
T 1x3o_A 28 EARFIEDLGADSLDTVELIMGLEDEFGLE-----ISDEEAEKIRTVKDAVEYIK 76 (80)
T ss_dssp TCBTTTTTCCCHHHHHHHHHHHHHHHCCC-----CCHHHHHHCCBHHHHHHHHH
T ss_pred cCcHHhhcCccHHHHHHHHHHHHHHHCCC-----cCHHHHHHcCCHHHHHHHHH
Confidence 5677 899 99999999999999999888 88888899998886665543
|
| >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* | Back alignment and structure |
|---|
Probab=85.57 E-value=0.17 Score=39.43 Aligned_cols=47 Identities=9% Similarity=-0.140 Sum_probs=39.2
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
+..| .+| +|||.++||.+++....|.. .+...+++++|...+.....
T Consensus 30 ~~~l~~dlG~DSl~~~~l~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~ 78 (82)
T 2cnr_A 30 DKSFTDDLDVDSLSMVEVVVAAEERFDVK-----IPDDDVKNLKTVGDATKYIL 78 (82)
T ss_dssp TSBTTTTSCCCHHHHHHHHHHHHGGGTBC-----CCGGGGGTCSBHHHHHHHHH
T ss_pred CcchhhccCCChHHHHHHHHHHHHHhCCC-----CCHHHHHHcCCHHHHHHHHH
Confidence 4566 699 99999999999999999888 88888899998886665543
|
| >2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.98 E-value=0.22 Score=41.21 Aligned_cols=45 Identities=7% Similarity=-0.085 Sum_probs=38.0
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhH
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNR 127 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~ 127 (557)
+..|.+| +|||..|||+++|....|+. ++...+++.+|...+...
T Consensus 49 d~~l~dLGlDSL~~veL~~~lE~~fgi~-----i~~~~l~~~~TV~~l~~~ 94 (103)
T 2lte_A 49 DSRMEDLAFDSLVVSELSLKLRKEFGVT-----GVDDELDLLETVDELFQL 94 (103)
Confidence 5688999 99999999999999999988 888778888877655444
|
| >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=83.14 E-value=0.53 Score=39.61 Aligned_cols=49 Identities=12% Similarity=-0.025 Sum_probs=42.1
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
+..| .+| +|||..+||.++|....|+. .+...+++++|...+......+
T Consensus 30 d~~l~~dlG~DSL~~vel~~~lE~~fgi~-----i~~~~l~~~~Tv~~l~~~i~~~ 80 (115)
T 1klp_A 30 EKSFVDDLDIDSLSMVEIAVQTEDKYGVK-----IPDEDLAGLRTVGDVVAYIQKL 80 (115)
T ss_dssp TCCTTTTTCSHHHHHHHHHHHHHHHTCCC-----CCHHHHTTCCSHHHHHHHHHHH
T ss_pred CCchhhccCCCHHHHHHHHHHHHHHHCCC-----CCHHHHHcCCCHHHHHHHHHHH
Confidence 4567 799 99999999999999999988 8888889999998777766555
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=82.39 E-value=0.13 Score=51.65 Aligned_cols=49 Identities=6% Similarity=-0.037 Sum_probs=42.7
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHH
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQR 130 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~ 130 (557)
....|-+| .|||++++|.++|....|.. ++...+|++||...++.....
T Consensus 31 ~~~~ff~lGgdSl~a~~l~~~l~~~~~~~-----~~~~~~~~~~t~~~la~~~~~ 80 (329)
T 3tej_A 31 ADADFFALGGHXLLAMKLAAQLSRQVARQ-----VTPGQVMVASTVAKLATIIDA 80 (329)
T ss_dssp TTCBTTTTTCCHHHHHHHHHHHHHHHTSC-----CCHHHHHHCCBHHHHHHHHHS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHHHCCC-----CCHHHHHhCCCHHHHHHHHHh
Confidence 46788999 99999999999999999888 999999999999877766543
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=81.98 E-value=0.13 Score=40.12 Aligned_cols=45 Identities=11% Similarity=-0.107 Sum_probs=37.9
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNR 127 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~ 127 (557)
+..| .+| +|||..+||.++|....|.. .+...+++++|...+...
T Consensus 30 ~~~l~~dlG~DSl~~vel~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~ 76 (81)
T 1f80_D 30 EASFKEDLGADXLDVVELVMELEDEFDME-----ISDEDAEKIATVGDAVNY 76 (81)
T ss_dssp TCBHHHHSCCCHHHHHHHHHHHHHHTTCC-----CCHHHHHHCCBHHHHHHH
T ss_pred ccchHHHcCCcHHHHHHHHHHHHHHhCCc-----cCHHHHHHCCCHHHHHHH
Confidence 5678 899 99999999999999999988 888788888887755443
|
| >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=81.98 E-value=0.3 Score=38.30 Aligned_cols=47 Identities=9% Similarity=-0.118 Sum_probs=39.4
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
+..| .+| +|||..+||.++|....|.. .+...+++++|...+.....
T Consensus 32 ~~~l~~dlG~DSl~~vel~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~ 80 (84)
T 2kwl_A 32 DSRFVEDLNADSLDIYELLYLLEEAFDDK-----IPENEANEFETVGDVVNFIK 80 (84)
T ss_dssp TTHHHHTSSSCHHHHHHHHHHHHHHHTCC-----TTTTGGGGCSSHHHHHHHHH
T ss_pred CCchhhhcCCCHHHHHHHHHHHHHHHCCC-----cCHHHHHHCCCHHHHHHHHH
Confidence 5678 899 99999999999999999988 88778888888876655443
|
| >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=81.81 E-value=0.22 Score=38.98 Aligned_cols=47 Identities=9% Similarity=-0.077 Sum_probs=39.4
Q ss_pred chhh-HHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHH
Q 008700 78 SHSI-QSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~-~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~ 129 (557)
...| .+| +|||..+||.++|....|.. .+...+++++|...+.....
T Consensus 30 d~~l~~dlG~DSl~~vel~~~le~~fgi~-----i~~~~~~~~~Tv~~l~~~i~ 78 (82)
T 2qnw_A 30 ESNFIKDLDADSLDSVELVMAFEEKFGVS-----IPDEEASKIATVQDALSYIE 78 (82)
T ss_dssp TCBHHHHSCCCHHHHHHHHHHHHHHHTCC-----CCHHHHTTCCBHHHHHHHHH
T ss_pred ccchhhccCCcHHHHHHHHHHHHHHHCCc-----CCHHHHHHcCCHHHHHHHHH
Confidence 5677 799 99999999999999999988 88888888888876665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 557 | ||||
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 9e-70 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 9e-67 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 2e-59 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 2e-56 | |
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 2e-51 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 2e-51 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 4e-35 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 4e-33 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 2e-29 | |
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 2e-29 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 1e-25 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 2e-25 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 2e-23 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 3e-23 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 3e-19 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 4e-19 |
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 222 bits (567), Expect = 9e-70
Identities = 107/252 (42%), Positives = 158/252 (62%), Gaps = 5/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLD 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+L +R+D+F+ Y L A + AL D G+ + +LD + G L+G+G+GGM+ +
Sbjct: 62 RKEL-RRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 285 AL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVMGEGAGVL+
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 404 LEELEHAKKRGA 415
LE EHAKKRGA
Sbjct: 238 LEAYEHAKKRGA 249
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 215 bits (547), Expect = 9e-67
Identities = 110/252 (43%), Positives = 164/252 (65%), Gaps = 4/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ + +
Sbjct: 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDII 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ K ++MD F+ Y + AG +A+ D G+ E + ++ G IGSG+GG+ + +
Sbjct: 62 SRKEQRKMDAFIQYGIVAGVQAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHT 118
Query: 285 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
+L +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 119 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAY 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+G+GAG+L+
Sbjct: 179 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 238
Query: 404 LEELEHAKKRGA 415
LEE EHAKKRGA
Sbjct: 239 LEEYEHAKKRGA 250
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 195 bits (497), Expect = 2e-59
Identities = 107/252 (42%), Positives = 156/252 (61%), Gaps = 4/252 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F ++
Sbjct: 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFL 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
K +KRMD+F + + A ++A+ D + +NEL+ + GVLIG+G+GG+KV D
Sbjct: 62 DRKEAKRMDRFCHFAVCASQQAINDAKLV---INELNADEIGVLIGTGIGGLKVLEDQQT 118
Query: 285 ALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 343
L + +PF +P NM S + A++LG GPN TACA + I +A +
Sbjct: 119 ILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQN 178
Query: 344 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403
G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVMGEG+G+L+
Sbjct: 179 GYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGILI 238
Query: 404 LEELEHAKKRGA 415
LEELE A RGA
Sbjct: 239 LEELESALARGA 250
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 188 bits (477), Expect = 2e-56
Identities = 110/256 (42%), Positives = 156/256 (60%), Gaps = 5/256 (1%)
Query: 161 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 220
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 5 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 64
Query: 221 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 280
D + K + R D + LY L A ++A+ + + L++ + GV++ SG+GG+K
Sbjct: 65 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLD---VEALNRDRFGVIVASGIGGIKEIE 121
Query: 281 DAIEALRIS-YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 339
D + L K++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 122 DQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFR 181
Query: 340 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGA 399
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVMGEG+
Sbjct: 182 SIKFGFQDVMLVGGTEASITPFAIAGFQALTALS-TTEDPTRASIPFDKDRNGFVMGEGS 240
Query: 400 GVLLLEELEHAKKRGA 415
G+L+LE LEHA+KRGA
Sbjct: 241 GMLVLESLEHAEKRGA 256
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 175 bits (444), Expect = 2e-51
Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 19/271 (7%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFD--------------CTSFPTK 210
+RVVVTG+G+V+PLG + + L++G GI + D +K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 211 IAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGV 267
+AA + S G L SK + F+ Y + A +AL D E +++ +
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 268 LIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC 327
G G V + ++++PF +P NM S ++M G+ GPN++ TAC
Sbjct: 121 GGGIGSICDIVEAAQLI-CEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTAC 179
Query: 328 ATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPW 386
AT I +A I G+A+VM+ GG+++++ + + GF RALS + N P +ASRP+
Sbjct: 180 ATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPF 239
Query: 387 DINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417
D +RDGFV+GEG+GV++LEE EHAK+RGAKI
Sbjct: 240 DCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 174 bits (441), Expect = 2e-51
Identities = 78/255 (30%), Positives = 121/255 (47%), Gaps = 5/255 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K +T
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLID 61
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
+ D + L+ A + + G++ GSG G + +
Sbjct: 62 RKVVRFMSDASIYAFLSM---EQAIADAGLSPEAYQNNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 285 ALRIS--YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 342
A+R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQIQ 178
Query: 343 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402
G+ +++ GG + + ++ N+ P KASR +D +RDGFV+ G G++
Sbjct: 179 LGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMV 238
Query: 403 LLEELEHAKKRGAKI 417
++EELEHA RGA I
Sbjct: 239 VVEELEHALARGAHI 253
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 129 bits (324), Expect = 4e-35
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 4/216 (1%)
Query: 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 224
+RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF 60
Query: 225 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 284
P+ RMD+ + + ++A A G+ D ++ + ++ Y +
Sbjct: 61 GPRELDRMDRASQFAVACAREAFAASGLDPDTLDPARVGVSLGSAVAAATSLEREYLLLS 120
Query: 285 ----ALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 340
+ ++ + ++ A +A +G GP +ST C + + NA
Sbjct: 121 DSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRA 180
Query: 341 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRN 376
I G A+VM G +D + PI + F A RA + RN
Sbjct: 181 IEEGSADVMFAGAADTPITPIVVACFDAIRATTARN 216
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 123 bits (309), Expect = 4e-33
Identities = 69/166 (41%), Positives = 93/166 (56%), Gaps = 1/166 (0%)
Query: 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEP 436
+DP ASRP+D RDGFV+ EGA + +LE+ + A RGA+I+AE G + +AYHMT
Sbjct: 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGL 60
Query: 437 HPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVN 495
DG + I AL S D++YINAH + T D E A G++ R V+
Sbjct: 61 KADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVS 120
Query: 496 STKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
S KSM+GH LGA G++E A V A+ G + P NL D +D
Sbjct: 121 SIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLD 166
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 113 bits (283), Expect = 2e-29
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 3/207 (1%)
Query: 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAP 226
V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F +
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPG 61
Query: 227 KLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL 286
+L + D LTA AL D + + + D + G + +
Sbjct: 62 RLLPQTDPSTRLALTAADWALQDAKADPESLTDYDMGVVT--ANACGGFDFTHREFRKLW 119
Query: 287 RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEA 346
K ++ + + + +++ G GP+ ++ A + +A I RG
Sbjct: 120 SEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVAEQAGGLDALGHARRTIRRG-T 178
Query: 347 NVMLCGGSDAAVIPIGLGGFVACRALS 373
+++ GG D+A+ P G +A +S
Sbjct: 179 PLVVSGGVDSALDPWGWVSQIASGRIS 205
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 111 bits (279), Expect = 2e-29
Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 418 YAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIK 477
YAE G + DA+H+T+P DG G +L + +AL SG+ ++Y+NAHATSTP GD
Sbjct: 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAV 60
Query: 478 EYQALIHCFGQNRGLR---VNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
E +A+ F ++ +STK GHLLGAAGAVEAI + AI G +N++NP
Sbjct: 61 EARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNP 120
Query: 535 DAVVAIDSGHECACGPKERETR 556
D D K+ R
Sbjct: 121 DP--IFDKRFMPLTTSKKMLVR 140
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 100 bits (251), Expect = 1e-25
Identities = 64/139 (46%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGD 475
KIY E G + T DAYH+T P PDG G I AL SG+ E V+YINAH TSTPA D
Sbjct: 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPAND 60
Query: 476 IKEYQALIHCFGQNR-GLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
+ E +A+ G + + V+STKSM GHLLG +G +EA+A V AI + P INLENP
Sbjct: 61 VTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENP 120
Query: 535 DAVVAIDSGHECACGPKER 553
D +D +
Sbjct: 121 DPECDLDYVPGQSRALIVD 139
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 100 bits (249), Expect = 2e-25
Identities = 62/120 (51%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGD 475
KIYAE G +SDAYHMT P +G G L + AL +G+ + Y+NAH TSTPAGD
Sbjct: 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGD 60
Query: 476 IKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
E QA+ FG+ + V+STKSM GHLLGAAGAVE+I + A+R + P INL+NP
Sbjct: 61 KAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNP 120
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 94.5 bits (234), Expect = 2e-23
Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGD 475
+IYAE G ++DA+H+TEPHP+G G L + +AL +G++ E V YINAH TSTP GD
Sbjct: 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGD 60
Query: 476 IKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
E A+ FG + + L V+STKSMIGHLLGAAGAVEAIA VQA+ G I P INLE+P
Sbjct: 61 RAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDP 120
Query: 535 DAVVAIDSGHECACGPKER 553
D + +D E +
Sbjct: 121 DPELDLDFVPEPREAKVDY 139
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 95.4 bits (236), Expect = 3e-23
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 3/164 (1%)
Query: 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPH 437
DP +A P+D G+V GEG +L+LE+ A+ RG + + + +
Sbjct: 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDA--YGELAGCASTFDPAPGS 58
Query: 438 PDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNST 497
G+ I AL +G EDV+ + A P D E +A I G+ V
Sbjct: 59 GRPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARA-IGRVFGREGVPVTVP 117
Query: 498 KSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541
K+ G L G ++ + + ++R G I P + + ID
Sbjct: 118 KTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGID 161
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 82.5 bits (203), Expect = 3e-19
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 418 YAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIK 477
YAE G TSD M P + G + C++ A+ ++Y+N+H TSTP GD+K
Sbjct: 1 YAEIVGYGATSDGADMVAPSGE--GAVRCMKMAMHG---VDTPIDYLNSHGTSTPVGDVK 55
Query: 478 EYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENP 534
E A+ FG +++TK+M GH LGAAG EAI + + G+I P+IN+E
Sbjct: 56 ELAAIREVFGDKS-PAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEEL 111
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 82.5 bits (203), Expect = 4e-19
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 417 IYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDI 476
I AE G T DAYHMT PHP+G G I I+ AL + +S E V Y+NAH TSTPA +
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 477 KEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDA 536
E A++ G+ + V+STKS GHLLGAAGAVEAI ++A+R ++
Sbjct: 62 GESGAIVAVLGKE--VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSD 119
Query: 537 VVAID 541
+ +
Sbjct: 120 YIEAN 124
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqyb1 | 208 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqya1 | 216 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1e5ma2 | 161 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 99.95 | |
| d2gfva2 | 161 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 99.95 | |
| d1ox0a2 | 158 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 99.95 | |
| d2ix4a2 | 161 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 99.95 | |
| d1j3na2 | 159 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 99.95 | |
| d2vbaa2 | 151 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 99.91 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 99.46 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 99.34 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 99.24 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.23 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 99.2 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 99.19 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 99.19 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 99.15 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 99.04 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.98 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 98.9 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 98.89 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.85 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.84 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.81 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 98.65 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 97.1 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 96.9 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 96.76 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 95.19 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 94.77 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 94.12 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 93.73 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 92.99 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 92.85 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 91.97 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 91.71 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 91.06 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 89.56 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 88.19 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 86.77 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 83.03 |
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-47 Score=376.10 Aligned_cols=248 Identities=44% Similarity=0.759 Sum_probs=233.1
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|||||||+++|.|.++++||++|.+|+++|+++++|+...++..+.+.+++|+....+++++.++|||+++|++.+++
T Consensus 2 rrVaItG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 81 (250)
T d2gfva1 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGV 81 (250)
T ss_dssp CCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHHH
T ss_pred CeEEEECCeeECCCcCCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeee
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSI 323 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv 323 (557)
+||+|||++.+ .++..++||++|+..++....+..+..+ ......++|..++..+.|.++++|++.||++||+++|
T Consensus 82 ~Al~dAg~~~~---~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~tv 158 (250)
T d2gfva1 82 QAMQDSGLEIT---EENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI 158 (250)
T ss_dssp HHHHHHTCCCC---TTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCCSCEECC
T ss_pred HHHHhcCCCcc---ccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCCCCcccc
Confidence 99999999875 5567899999999998887777666655 4566788999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
+++|+||+.||..|+++|++|++|++||||+|..++|..+..|..++.|+..+.+|++.|||||.++||+++|||+++||
T Consensus 159 ~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~gEGaa~lV 238 (250)
T d2gfva1 159 ATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 238 (250)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEEEEEE
T ss_pred ccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCCCCCCCCccCCCCCCCCCEeeeeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred EcchHHHHhcCC
Q 008700 404 LEELEHAKKRGA 415 (557)
Q Consensus 404 Le~~~~A~~~G~ 415 (557)
||++++|++||+
T Consensus 239 LE~~~~A~~rGA 250 (250)
T d2gfva1 239 LEEYEHAKKRGA 250 (250)
T ss_dssp EEEHHHHHHHTC
T ss_pred ECcHHHHHHCcC
Confidence 999999999985
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.7e-46 Score=370.58 Aligned_cols=248 Identities=43% Similarity=0.787 Sum_probs=228.2
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
|++|||||||+++|.|.++++||++|.+|+++|.++++|+...++....+.+ +++...++++++.+.||++++++++++
T Consensus 1 M~rVaItG~G~vsp~g~~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~l~aa 79 (249)
T d1j3na1 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYLDRKELRRLDRFVQYALIAA 79 (249)
T ss_dssp CCCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECC-CCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred CCcEEEECCEeECCCcCCHHHHHHHHHcCCCccccCCccccccCCccccccc-cccccccccHHHHhhCCHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999888887776665 455566689999999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~t 322 (557)
++||+|||++++ ++++.|||||+|++.++......+.... ......++|+.++..+.|.++++|++.||++||+++
T Consensus 80 ~~Al~dAGl~~~---~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~Gp~~t 156 (249)
T d1j3na1 80 QLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSST 156 (249)
T ss_dssp HHHHHHHTCCGG---GSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCBCC
T ss_pred HHHHHHcCCChh---HcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCCCCccc
Confidence 999999999986 5667899999999999887776666554 556778899999999999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+++|+|++.||+.|+++|++|++|++||||+|...+|..+..|...+.|+..+..|++.|||||.++||+++||||+++
T Consensus 157 v~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFd~~~dG~v~gEGa~~l 236 (249)
T d1j3na1 157 VVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVL 236 (249)
T ss_dssp BCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEEEE
T ss_pred cccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCCCCCCCCCCCCccCCCCCEeeEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred EEcchHHHHhcCC
Q 008700 403 LLEELEHAKKRGA 415 (557)
Q Consensus 403 vLe~~~~A~~~G~ 415 (557)
|||++++|++||+
T Consensus 237 vLe~~~~A~~rGA 249 (249)
T d1j3na1 237 VLEAYEHAKKRGA 249 (249)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEccHHHHHHCcC
Confidence 9999999999985
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=4e-45 Score=360.45 Aligned_cols=249 Identities=43% Similarity=0.764 Sum_probs=232.2
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
+++|||||||+++|.|.++++||++|.+|+++|+++++|+...++....+.++.++..+.+++++.+.||++++++++++
T Consensus 1 ~~rVaItG~G~v~p~G~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~ 80 (250)
T d1e5ma1 1 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS 80 (250)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred CCeEEEECCeeECCCCCCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988899998888887899999999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYS 322 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~t 322 (557)
.+||+|||++++ .+...+++|++|+..+........+..+ .......++..+.....+.++.++++.||++||+++
T Consensus 81 ~~Al~~Agl~~~---~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~Gp~~t 157 (250)
T d1e5ma1 81 QQAINDAKLVIN---ELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNC 157 (250)
T ss_dssp HHHHHHHTCCCC---TTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCCSCEEC
T ss_pred HHHHHHcCCChH---hhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCCCCCcc
Confidence 999999999876 5667999999999988887777666655 455677888888889999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEE
Q 008700 323 ISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVL 402 (557)
Q Consensus 323 v~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaal 402 (557)
|+++|+|++.||++|+++|++|++|++||||+|..++|..+..|.+++.|+..+.+|++.|||||.++|||++|||++++
T Consensus 158 v~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~~dG~~~gEGa~~~ 237 (250)
T d1e5ma1 158 TVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGIL 237 (250)
T ss_dssp CCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEEEE
T ss_pred ccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCCCCCCCCccCCCCCCCCCEeeEeeEEEE
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred EEcchHHHHhcCC
Q 008700 403 LLEELEHAKKRGA 415 (557)
Q Consensus 403 vLe~~~~A~~~G~ 415 (557)
|||++++|++||+
T Consensus 238 vLe~l~~A~~rGA 250 (250)
T d1e5ma1 238 ILEELESALARGA 250 (250)
T ss_dssp EEEEHHHHHHTTC
T ss_pred EEeeHHHHHHCcC
Confidence 9999999999985
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-41 Score=334.28 Aligned_cols=250 Identities=35% Similarity=0.547 Sum_probs=217.6
Q ss_pred CCcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHH
Q 008700 164 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG 243 (557)
Q Consensus 164 ~~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa 243 (557)
|+||||||||+++|.|.++++||++|++|+++|+++++|+...++....+.+.. ....++...+.+.+++..++.+.++
T Consensus 1 m~RVvITG~G~i~p~G~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T d2vbaa1 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKL-DTTGLIDRKVVRFMSDASIYAFLSM 79 (253)
T ss_dssp CCCEEEEEEEEEBTTBSSHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCC-CCTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred CCcEEEEccEEECCCCCCHHHHHHHHHcCCCccccCCccccccCcccccccccc-cccccccchhhccchhhhhhhhHHH
Confidence 468999999999999999999999999999999999988887887776666644 4445578888999999999999999
Q ss_pred HHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH--HhhhccCCCccccccccchhHHHHHHhhCCCCCee
Q 008700 244 KKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL--RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 321 (557)
Q Consensus 244 ~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l--~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~ 321 (557)
.+|++++++..+. .....|+|+++|+..++..........+ ......++|+.++....+.++++|++.||++||++
T Consensus 80 ~~a~~~~~l~~~~--~~~~~r~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g~~Gp~~ 157 (253)
T d2vbaa1 80 EQAIADAGLSPEA--YQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNY 157 (253)
T ss_dssp HHHHHHHTCCHHH--HTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCCSCEE
T ss_pred HHHHHHhhccchh--ccCCCCEEEEeccccccccccccccccccccCCccccCchhhhccccccccceeccccCccccee
Confidence 9999999998653 2356799999999988877665544444 23456678888899999999999999999999999
Q ss_pred eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCCCcCCCCCceecCceE
Q 008700 322 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMGEGAG 400 (557)
Q Consensus 322 tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rpfd~~~dG~v~gEGAa 400 (557)
+|+++|+||+.||+.|+++|++|++|++||||+|....+ .+..|..++.++.. +.+|++.|||||.+++||++|||++
T Consensus 158 ~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~~~~~-~~~~~~~~~~ls~~~~~~P~~~~rPFD~~~~G~v~gEGa~ 236 (253)
T d2vbaa1 158 SISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWE-MACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236 (253)
T ss_dssp EEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHH-HHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBCEEE
T ss_pred eeeccchhHHHHHHHHHHhcchhccceeeecchhhhhcc-hhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCEeeeeEEE
Confidence 999999999999999999999999999999999985555 56678888887754 5578999999999999999999999
Q ss_pred EEEEcchHHHHhcCCee
Q 008700 401 VLLLEELEHAKKRGAKI 417 (557)
Q Consensus 401 alvLe~~~~A~~~G~~i 417 (557)
++|||++++|++||++|
T Consensus 237 ~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 237 MVVVEELEHALARGAHI 253 (253)
T ss_dssp EEEEEEHHHHHHTTCCC
T ss_pred EEEEccHHHHHHccCcC
Confidence 99999999999999986
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=1.8e-38 Score=315.35 Aligned_cols=251 Identities=40% Similarity=0.667 Sum_probs=204.1
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCC--CC------------CccccccccCCCCCCCCChh---
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCT--SF------------PTKIAAEIKSFSTDGWVAPK--- 227 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~--~~------------~~~~~g~i~~fd~~~~i~p~--- 227 (557)
++|||||||+++|.|.++++||++|.+|+++|++++.+++. .+ +..+.++++.+.....+.++
T Consensus 1 rRVvITG~G~vsP~G~~~ee~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T d2ix4a1 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSKVAAFVPYGSNPGEFDEALWL 80 (270)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHTTCCCEEECCGGGGCCTTSCHHHHHHHHHTCSCCEEECCCBSSSTTSBCHHHHS
T ss_pred CeEEEECceeECCCcCCHHHHHHHHHcCCCeeccCChhhcccccccccccccccccccceeeeecccccCchhhhHHHhh
Confidence 47999999999999999999999999999999998765543 22 23334445443322222222
Q ss_pred hhccCCHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchh
Q 008700 228 LSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMG 306 (557)
Q Consensus 228 ~~~~md~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~ 306 (557)
...++++....++.+..+|+++++..... .....++++.++................ ........++.++..+.|.+
T Consensus 81 ~~~~~~~~~~~a~~a~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (270)
T d2ix4a1 81 NSKAVANFIGYAVCAADEALRDAEWLPTE--EEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMA 158 (270)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHHTTCCCCS--HHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcccc--ccccccceEEeeccccccccchhhcchhhhccccccCcccCcccccchh
Confidence 24567888888999999999999875421 2334566777766665554433333332 44557788889999999999
Q ss_pred HHHHHHhhCCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc-CCCCCCCCCC
Q 008700 307 SAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASRP 385 (557)
Q Consensus 307 a~~ia~~lgl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~-~~~p~~~~rp 385 (557)
+++|++.||++||+++|+++|+|++.||++|+++|++|+||+|||||+|..++|..+..|...+.|+.. +.+|++.|||
T Consensus 159 a~~is~~~~l~Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~~rP 238 (270)
T d2ix4a1 159 SGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRP 238 (270)
T ss_dssp HHHHHHHHTCCSCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCT
T ss_pred HHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999865 4678899999
Q ss_pred CcCCCCCceecCceEEEEEcchHHHHhcCCee
Q 008700 386 WDINRDGFVMGEGAGVLLLEELEHAKKRGAKI 417 (557)
Q Consensus 386 fd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i 417 (557)
||.+++|+++|||++++|||++++|++||++|
T Consensus 239 FD~~a~G~v~gEGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 239 FDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp TBTTCCSBCBBCEEEEEEEEEHHHHHHTTCCC
T ss_pred CCCCCCCEeeEeeEEEEEEeeHHHHHHccCCC
Confidence 99999999999999999999999999999986
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=4.1e-38 Score=300.49 Aligned_cols=166 Identities=42% Similarity=0.629 Sum_probs=159.3
Q ss_pred CCCCCCCCCCcCCCCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 008700 377 NDPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 456 (557)
Q Consensus 377 ~~p~~~~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl 456 (557)
++|++.|||||.++|||++|||++++|||++++|+++|++||++|.|++.++|+.+.+.+.|++..+.++++++|+++++
T Consensus 1 ~~P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~~a~i 80 (205)
T d1tqya2 1 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 80 (205)
T ss_dssp SCGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHhhhcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPD 535 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~ 535 (557)
+++||+|||+|||||+.+|++|+++|.++|+.. .+++|+++|+++||+++|||++++++++++|++++|||++|+++|+
T Consensus 81 ~~~~i~~ie~hgtGt~~~D~~E~~ai~~~~~~~~~~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~~~ 160 (205)
T d1tqya2 81 DATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSD 160 (205)
T ss_dssp CGGGCCEEECCCCCCHHHHHHHHHHHHHHTGGGGGGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCSBB
T ss_pred CccceeeeeccccccccCchhHHHHHHHhhccccCCceeeeecccccccccccchhHHHHHHHHHhCCeEcccCCCCCCC
Confidence 999999999999999999999999999999854 4688999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 008700 536 AVVAIDS 542 (557)
Q Consensus 536 ~~~~~~~ 542 (557)
|+++++.
T Consensus 161 p~~~~~~ 167 (205)
T d1tqya2 161 PECDLDY 167 (205)
T ss_dssp TTBCSCC
T ss_pred CCCCccc
Confidence 9998763
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.6e-37 Score=292.11 Aligned_cols=171 Identities=29% Similarity=0.484 Sum_probs=153.7
Q ss_pred CCCCCCCCCcCCCCCceecCceEEEEEcchHHHHhcCC-eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 008700 378 DPTKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 456 (557)
Q Consensus 378 ~p~~~~rpfd~~~dG~v~gEGAaalvLe~~~~A~~~G~-~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl 456 (557)
+|++.|||||.++|||++|||++++|||++++|+++|+ +||++|.|+++++|+.+.. +.+ .++.++|+++|+++++
T Consensus 1 ~p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~~-~~~--~g~~~~i~~aL~~a~i 77 (194)
T d1tqyb2 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS-GRP--AGLERAIRLALNDAGT 77 (194)
T ss_dssp CGGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTC-CCC--CSHHHHHHHHHHHHTC
T ss_pred CCCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeecccccccccccc-cch--hhhhhhhhhhcccccc
Confidence 48889999999999999999999999999999999997 6999999999999987543 333 3578899999999999
Q ss_pred CCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 008700 457 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDA 536 (557)
Q Consensus 457 ~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~ 536 (557)
+++||+|||+|||||+.+|.+|+++|.++|+.. .++|+++|+++||+++|||++++++++++|++++|||++|+++|++
T Consensus 78 ~~~di~~v~ahgtGt~~~D~~E~~al~~~f~~~-~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~~~~ 156 (194)
T d1tqyb2 78 GPEDVDVVFADGAGVPELDAAEARAIGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPR 156 (194)
T ss_dssp CGGGCCEEECCCCCSHHHHHHHHHHHHHHHCTT-CSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCCCCG
T ss_pred cccceeeeeccccCcccccHHHhhhhhhhhhcc-ccccccccccccccccccccceehhhhhhhhhceeccccCCCCCCc
Confidence 999999999999999999999999999999865 4889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCcccc
Q 008700 537 VVAIDSGHECACGPKERET 555 (557)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~ 555 (557)
+++++ +.+.+|.+++.
T Consensus 157 ~~~~~---~v~~~~~~~~~ 172 (194)
T d1tqyb2 157 EYGID---LVLGEPRSTAP 172 (194)
T ss_dssp GGCCE---ECBSSCBCCCC
T ss_pred ccCcc---ccCCCCccCCC
Confidence 88764 34446655443
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=6.8e-36 Score=286.04 Aligned_cols=204 Identities=23% Similarity=0.370 Sum_probs=191.1
Q ss_pred EEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKA 246 (557)
Q Consensus 167 IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~eA 246 (557)
|||||||+++|.|.++++||++|.+|+++|+++++|+...++....+++++|+...++++++.+.|||+++|++.++.+|
T Consensus 2 VvITG~G~vsp~g~~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A 81 (208)
T d1tqyb1 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAADWA 81 (208)
T ss_dssp EEEEEEEEEETTEESHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHHHH
T ss_pred EEEEcceeECCCcCCHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhcccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHH-HhhhccCCCccccccccchhHHHHHHhhCCCCCeeeecC
Q 008700 247 LADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 325 (557)
Q Consensus 247 LedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l-~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~Gp~~tv~~ 325 (557)
|+|||+++. .+...++|+++|+..++....++.+..+ ....+..+|+.++..+.|+.+++|++.||++||+++|++
T Consensus 82 l~~Ag~~~~---~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~Gp~~tv~t 158 (208)
T d1tqyb1 82 LQDAKADPE---SLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMRGPSSALVA 158 (208)
T ss_dssp HHHTTCCGG---GSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCCSSCEEEEC
T ss_pred chhhhcccc---cccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhcccccceeeeccc
Confidence 999999986 5567899999999999998887777766 455667889988999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhc
Q 008700 326 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ 374 (557)
Q Consensus 326 aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~ 374 (557)
+|+|++.||+.|+++|++| +|+|||||+|..++|..+.+|.+++.||.
T Consensus 159 ACaS~l~Ai~~A~~~I~~G-~d~~lvGG~d~~l~p~~~~~f~~~~~lSt 206 (208)
T d1tqyb1 159 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206 (208)
T ss_dssp GGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC
T ss_pred cccHHHHHHHHHHHHHHcC-CCEEEECccccccCHHHHHHHHHcCCCCC
Confidence 9999999999999999999 99999999999999999999999999983
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=1.9e-34 Score=277.53 Aligned_cols=208 Identities=27% Similarity=0.414 Sum_probs=184.1
Q ss_pred CcEEEEecceeccCCCCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHH
Q 008700 165 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 244 (557)
Q Consensus 165 ~~IaItG~g~~~P~g~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~ 244 (557)
++|||||||+++|.|.++++||++|.+|+++|++++.|+...+.......++.+...+.+++++.+.|++.++|++.+++
T Consensus 1 rRVvItG~G~v~p~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aa~ 80 (216)
T d1tqya1 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVACAR 80 (216)
T ss_dssp CCEEEEEEEEEETTEESHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHHHHH
T ss_pred CeEEEEeceeECCCCCCHHHHHHHHHcCCCEeecCCccCCCcccccccccccccccccccChhhhcccCcchhhHHHHHH
Confidence 47999999999999999999999999999999999999887776665555443333445899999999999999999999
Q ss_pred HHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhh-------hccCCCccccccccchhHHHHHHhhCCC
Q 008700 245 KALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-------YKKMNPFCVPFATTNMGSAMLAMDLGWM 317 (557)
Q Consensus 245 eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~-------~~~~~p~~~~~~~~n~~a~~ia~~lgl~ 317 (557)
+||+|||++++ .+.+.++++++|.+.++.....+.+..+... .....++.++..+.|.++.++++.+|++
T Consensus 81 ~Al~dAg~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~g~~ 157 (216)
T d1tqya1 81 EAFAASGLDPD---TLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAE 157 (216)
T ss_dssp HHHHHHTCCTT---TCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTCC
T ss_pred HHHHHhcCCcc---ccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHHHHHHhcCcc
Confidence 99999999976 5667899999999999988877777766432 2356677777888999999999999999
Q ss_pred CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhcc
Q 008700 318 GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR 375 (557)
Q Consensus 318 Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~ 375 (557)
||+++|+++|+|++.||.+|+++|++|++|+|||||+|..++|..+.+|++++.||.+
T Consensus 158 Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~d~~ivGG~d~~l~p~~~~~F~~~~alS~~ 215 (216)
T d1tqya1 158 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215 (216)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC
T ss_pred ccceeeccccchHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999854
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=99.95 E-value=4e-29 Score=228.60 Aligned_cols=128 Identities=50% Similarity=0.744 Sum_probs=122.1
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCccc
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRV 494 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v 494 (557)
+||++|+|+++++|+++.+.+.|++.++.++|++||+++|++|+||+|||+|||||+.+|.+|..+|+++|++. .+++|
T Consensus 1 rIya~i~G~~~~~Dg~~~~~~~p~g~~~~~~i~~Al~~a~i~~~~i~~v~~HgtGT~~~D~~E~~al~~vf~~~~~~~~v 80 (161)
T d1e5ma2 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAV 80 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGGGGSEE
T ss_pred CEEEEEeeEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHcCCChhhcceEEEeccCCcccchHHhhhhhhccccCCCcceE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999864 46899
Q ss_pred ccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q 008700 495 NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSG 543 (557)
Q Consensus 495 ~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~ 543 (557)
+++|+++||+++|||++++++++++|++++|||++|+++|+|.++++..
T Consensus 81 ~s~K~~~GH~~~AsG~~~l~~~l~~~~~g~ipp~~~~~~~~~~~~~~~~ 129 (161)
T d1e5ma2 81 SSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYV 129 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSCCC
T ss_pred EecccccccccccchhhHHHHhHHhcccCeeCCccCCCCCCCCCCcccC
Confidence 9999999999999999999999999999999999999999999976643
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=8.1e-29 Score=226.71 Aligned_cols=129 Identities=50% Similarity=0.739 Sum_probs=122.2
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCccc
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRV 494 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v 494 (557)
+||++|+|+++++|+.+.+.|.|++.++.++|+++|+++|++|+||+|||+|||||+++|++|+.+|.++|++. .++++
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~a~i~p~~i~~ie~HgtGT~~gD~~E~~Al~~~f~~~~~~~~i 80 (161)
T d2gfva2 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLV 80 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGGTTSEE
T ss_pred CEEEEEeeEEEeCCCCCCCCCCCCHHHHHHHHHHhHhhcccCcceEEEEEeecccCcccHHHHHHHHHHHhcccccccee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999864 56899
Q ss_pred ccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCc
Q 008700 495 NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGH 544 (557)
Q Consensus 495 ~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~ 544 (557)
+++|+++||+++|||++++++++++|+++++||++|+++|++.+.+....
T Consensus 81 ~s~Ks~~GH~~~AsG~~~li~~ll~l~~~~ipp~~~~~~~~~~~~~~~~~ 130 (161)
T d2gfva2 81 SSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVP 130 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHSCEECCBTTCSSBCTTCCSBCCB
T ss_pred ccccccccccHHHHHHHHHHHHHHHhcCCEeccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999988765443
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.95 E-value=1.3e-28 Score=224.31 Aligned_cols=124 Identities=44% Similarity=0.665 Sum_probs=119.9
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccc
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVN 495 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~ 495 (557)
+||++|+|+++++|+++.+.|+|++.++.++|+++|+++|++|+||||||+|||||+.+|.+|..+|.++|++ .++++
T Consensus 1 tIyaei~G~~~~~Dg~~~~~p~p~g~~~~~~~~~al~~a~l~p~~i~~v~aHgtgT~~~D~~E~~ai~~~fg~--~~~v~ 78 (158)
T d1ox0a2 1 TILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK--EVPVS 78 (158)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHHHHHHHHHHHHHCS--SSEEE
T ss_pred CEEEEEEEEEEcCCCCCCcCCCCCHHHHHHHHHHhhccccccceeeeEEeeeccccccchhHHHHHHHHhcCC--cccCc
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999986 48899
Q ss_pred cCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCC
Q 008700 496 STKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAID 541 (557)
Q Consensus 496 s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~ 541 (557)
++|+++||+++|||++++++++++|+++++||++|+++|+++++++
T Consensus 79 s~Ks~iGH~~~asG~~~l~~~l~~l~~g~iPp~~~~~~~~~~~~~~ 124 (158)
T d1ox0a2 79 STKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEAN 124 (158)
T ss_dssp CTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSE
T ss_pred CcccccccchhhhhhhhhcccccccccceeccccCCCCCCcccCcc
Confidence 9999999999999999999999999999999999999999998765
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=99.95 E-value=2.6e-28 Score=223.17 Aligned_cols=129 Identities=43% Similarity=0.635 Sum_probs=121.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC---CCccc
Q 008700 418 YAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN---RGLRV 494 (557)
Q Consensus 418 ~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~---~~~~v 494 (557)
|++|+|+++++|+++++.|+|+++++..+|+++|++++++|+||+|||+|||||+++|++|+++++++|+.. .+++|
T Consensus 1 Y~~i~G~~~~~Dg~~~t~p~~~g~~~~~~~~~al~~a~~~~~di~yveaHGtGT~~gD~~E~~al~~~~~~~~~~~~~~i 80 (161)
T d2ix4a2 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAF 80 (161)
T ss_dssp CEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHTHHHHTSCSEE
T ss_pred CeEEEEEEEcCCCCCCcCCChhHHHHHHHHHHHHHhcCCCccccCEEEEeccCCCCCcHHHHhhhHhhhcccccccceee
Confidence 899999999999999999999999999999999999999999999999999999999999999999999753 46899
Q ss_pred ccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccc
Q 008700 495 NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSGHEC 546 (557)
Q Consensus 495 ~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~~~~ 546 (557)
+++|+++||+++|||++++++++++|+++++||++|+++|||.++++..++.
T Consensus 81 ~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~~~~~ 132 (161)
T d2ix4a2 81 SSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLT 132 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCCSSSCCCS
T ss_pred eccccccCCccchHHHHHHHHHHHHHhcCCCCCccCCCCCCcccCcccCccc
Confidence 9999999999999999999999999999999999999999999987765443
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=2.3e-28 Score=223.13 Aligned_cols=128 Identities=55% Similarity=0.829 Sum_probs=121.3
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCccc
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRV 494 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v 494 (557)
+||++|+|+++++|+.+.+.|.|++.++..+++++|+++|++|+||||||+|||||+.+|.+|+.+|+++|+.. .+++|
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~agi~p~~I~~ie~HgtGT~~gD~~E~~Al~~~f~~~~~~~~i 80 (159)
T d1j3na2 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAKRLMV 80 (159)
T ss_dssp CCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEeEEEEeCCCCCCCCCCcCHHHHHHHhhccHhhcCCCHHHcCeEeccccCCccchHHHHHHHHHHHHhcCCCceE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999753 45889
Q ss_pred ccCcccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCC
Q 008700 495 NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVAIDSG 543 (557)
Q Consensus 495 ~s~K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~~~~~ 543 (557)
++.|+++||+++|||++++++++++|+++++||++|+++|++++++...
T Consensus 81 ~s~K~~~GH~~~asG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~ 129 (159)
T d1j3na2 81 SSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFV 129 (159)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBCC
T ss_pred ecccccccccccccccchhhhhhhHhhCCEeccccccccccceeeeecc
Confidence 9999999999999999999999999999999999999999998876533
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=6.3e-25 Score=198.10 Aligned_cols=116 Identities=41% Similarity=0.680 Sum_probs=107.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccC
Q 008700 418 YAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNST 497 (557)
Q Consensus 418 ~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~ 497 (557)
|++|+|++.++|+++++. |++.++.++|+++|+++ ++||||||+|||||+++|++|+.+|.++|++. .++|++.
T Consensus 1 Yaei~G~g~~~Dg~~~ta--P~~~~~~~~~~~al~~a---~~~I~~v~aHgtGT~~gD~~E~~Al~~vfg~~-~~~v~s~ 74 (151)
T d2vbaa2 1 YAEIVGYGATSDGADMVA--PSGEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREVFGDK-SPAISAT 74 (151)
T ss_dssp CEEEEEEEEEECCSCTTS--CCSHHHHHHHHHHHTTC---CSCCCEEECCCCSCHHHHHHHHHHHHHHHTTC-CCEEECT
T ss_pred CEEEEEEEEecCCCCCCC--cCHHHHHHHHHHhhhcC---cccceeEEEeccCCccccHHHHHHHHHHhCCC-Ccccccc
Confidence 899999999999988765 56788999999999876 57899999999999999999999999999865 4789999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 008700 498 KSMIGHLLGAAGAVEAIAVVQAIRTGWIHPNINLENPDAVVA 539 (557)
Q Consensus 498 K~~iGH~~gAaG~~~li~~~~~l~~~~lpp~~~~~~p~~~~~ 539 (557)
|+++||+++|||++++++++++|+++++||++|+++|++++.
T Consensus 75 K~~~GH~~~asG~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~ 116 (151)
T d2vbaa2 75 KAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAA 116 (151)
T ss_dssp HHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCT
T ss_pred hhhccccccchhhhhhhHHHHHHHcCCcccccCccccccccc
Confidence 999999999999999999999999999999999999998764
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=6.4e-13 Score=136.37 Aligned_cols=298 Identities=12% Similarity=0.087 Sum_probs=167.8
Q ss_pred cEEEEecceeccCC-CCHHHHHHHHHcCCCcceecc----CCCCCCCCccccccccCCCCC----CCCChhhhccC----
Q 008700 166 RVVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIE----TFDCTSFPTKIAAEIKSFSTD----GWVAPKLSKRM---- 232 (557)
Q Consensus 166 ~IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~----~~~~~~~~~~~~g~i~~fd~~----~~i~p~~~~~m---- 232 (557)
..+|+|+|..+|.- .+.+++++.+..-........ -+...+...+... .++.+.. ...++...+++
T Consensus 11 ~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~ 89 (372)
T d1teda_ 11 VAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMA-VDPLDAKFDVFRREPATIRDRMHLFY 89 (372)
T ss_dssp EEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECS-SCTTSTTHHHHTTCSSCHHHHHHHHH
T ss_pred eEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCccccee-ccccccchhhhhhcCCCHHHHHHHHH
Confidence 35799999999987 677888887754211100000 0111122222110 0111100 00111111121
Q ss_pred CHHHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHH
Q 008700 233 DKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAM 312 (557)
Q Consensus 233 d~~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~ 312 (557)
.....|+.+|+++||+++|+++++|| -|+++++. +...+..+.+|..
T Consensus 90 e~~~~la~~Aa~~aL~~ag~~~~dId-------~lI~~t~t--------------------------~~~~P~~a~~v~~ 136 (372)
T d1teda_ 90 EHAVPLAVDVSKRALAGLPYRAAEIG-------LLVLATST--------------------------GFIAPGVDVAIVK 136 (372)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGEE-------EEEEEESS--------------------------CCCSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHCC-------EEEEeccC--------------------------CCCCchHHHHHHh
Confidence 23457999999999999999998777 46665542 1222356789999
Q ss_pred hhCCCCCe--eeec-CCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCC
Q 008700 313 DLGWMGPN--YSIS-TACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDIN 389 (557)
Q Consensus 313 ~lgl~Gp~--~tv~-~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~ 389 (557)
.||++... +.+. .||++++.||..|..+|++|..+.+||+++|.+...... .+ . ++..
T Consensus 137 ~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~l~sg~~~~~LVV~~E~~s~~~~~---------------~d---~-~~~~ 197 (372)
T d1teda_ 137 ELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAVF---------------AD---D-INDV 197 (372)
T ss_dssp HHTCCTTCEEEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGCCC---------------CS---S-HHHH
T ss_pred hhccCCceeEeeccccCccHHHHHHHHHHHHHhcCCCccceeeeehhhcccccC---------------CC---c-chhh
Confidence 99997532 3343 589999999999999999999999999999963211000 00 0 0000
Q ss_pred CCCceecCceEEEEEcchHHHHhcCCeeeEEEEEEEEec--CCCCC---C--------CCCCC-----hHHHHHHHHHHH
Q 008700 390 RDGFVMGEGAGVLLLEELEHAKKRGAKIYAEFRGGSFTS--DAYHM---T--------EPHPD-----GVGVILCIEKAL 451 (557)
Q Consensus 390 ~dG~v~gEGAaalvLe~~~~A~~~G~~i~a~I~G~~~~~--d~~~~---~--------~~~p~-----~~~~~~ai~~aL 451 (557)
...+++||||+|+||++.+..... ......+.+..... +.... . ...+. ...+..+++++|
T Consensus 198 ~~~~lfGDGAaA~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L 276 (372)
T d1teda_ 198 VIHSLFGDGCAALVIGASQVQEKL-EPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEML 276 (372)
T ss_dssp HHHHHBCEEEEEEEEEEECTTSCC-CTTCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcccceeEEeccCCccccc-CCceeEEecccccccCCCccccccCCCCCcceeechHHHHHHHHHHHHHHHHHHH
Confidence 123468999999999865432211 11223333322111 00000 0 00011 245678899999
Q ss_pred HHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Cccc-ccCcccccchhhhHHHHHHHHHHHHHHcCCC
Q 008700 452 AHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRV-NSTKSMIGHLLGAAGAVEAIAVVQAIRTGWI 525 (557)
Q Consensus 452 ~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v-~s~K~~iGH~~gAaG~~~li~~~~~l~~~~l 525 (557)
+++|++++|||++..|..+... .+.+.+.++-.. .+.. ..+-..+||+.+|+=.+.| -..++++.+
T Consensus 277 ~~~gl~~~did~~i~Hq~~~~i-----~~~i~~~Lgl~~ek~~~s~~~l~~~GN~~sasip~~L---~~~l~~g~~ 344 (372)
T d1teda_ 277 WDNGLQISDIDLWAIHPGGPKI-----IEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFVL---ETMVQQAES 344 (372)
T ss_dssp HHTTCCGGGCSCEEECCSCHHH-----HHHHHHHHTCCGGGGHHHHHHHHHHCBCTHHHHHHHH---HHHHHSCSS
T ss_pred HhcCCCHHHhhhhhccCccHHH-----HHHHHHHcCCCHHHhhhhHHHHhccCCcHHHHHHHHH---HHHHHhCCC
Confidence 9999999999999999766553 334555555321 1111 1112346998766543332 234566554
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=99.34 E-value=6e-12 Score=122.29 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHH-CCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 236 MLYLLTAGKKALAD-GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 236 ~rl~l~aa~eALed-AGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
..|+..+++++|++ +|+++++|| .|++|+.... ......++..++...
T Consensus 31 ~dL~~~~i~~~l~r~agi~~~~Id-------~vi~G~v~~~------------------------~~~g~n~aR~~al~a 79 (262)
T d1wdkc1 31 EDMSAHLISKVLERNSKVDPGEVE-------DVIWGCVNQT------------------------LEQGWNIARMASLMT 79 (262)
T ss_dssp HHHHHHHHHHHHHHCTTSCGGGEE-------EEEEECSSBS------------------------BTTTTTHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCCCHHHee-------EEEEEeeccc------------------------ccccccchhhhHhhh
Confidence 46888899999995 999999888 6999986421 112334677788777
Q ss_pred CCC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc
Q 008700 315 GWM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (557)
Q Consensus 315 gl~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~ 359 (557)
|+- -|.++|+..|+||+.||..|++.|++|+.|++|+||+|.|..
T Consensus 80 g~p~~vp~~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEsmS~ 126 (262)
T d1wdkc1 80 QIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGH 126 (262)
T ss_dssp SSCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTT
T ss_pred hcccccchhhccccccHHHHHHHHHHHHHHhhcCCceeeeccccccc
Confidence 773 499999999999999999999999999999999999998754
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=99.24 E-value=3.6e-11 Score=117.16 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+..+++++|+++|+++++|| .|++|+... .....+++..++...|
T Consensus 28 ~dL~~~~~~~~l~~~~i~~~~Id-------~vi~G~~~~-------------------------~~~~~n~ar~~al~ag 75 (268)
T d1m3ka1 28 HELGATVISAVLERAGVAAGEVN-------EVILGQVLP-------------------------AGEGQNPARQAAMKAG 75 (268)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCC-------------------------TTSCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCc-------EEEEeeccc-------------------------cCcchHHHhHHHHHhC
Confidence 46889999999999999999888 699998641 1123456788888888
Q ss_pred CC--CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEecccccc
Q 008700 316 WM--GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (557)
Q Consensus 316 l~--Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~ 358 (557)
+. -|.++|+..|+||+.||.+|++.|+.|++|++|+||+|.|.
T Consensus 76 lp~~vpa~tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~EsmS 120 (268)
T d1m3ka1 76 VPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMS 120 (268)
T ss_dssp CCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEST
T ss_pred CcccccceeecccCcccchHHHHHHHHHhCCCceEEeeccccccc
Confidence 84 48999999999999999999999999999999999999876
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=4.1e-11 Score=117.24 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhC
Q 008700 236 MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLG 315 (557)
Q Consensus 236 ~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lg 315 (557)
..|+..+++++|+++|+++++|| .|++|+.... +.....++..++...|
T Consensus 25 ~dL~~~a~~~al~~~~i~~~~Id-------~vi~G~v~~~------------------------g~~~~n~aR~~al~aG 73 (273)
T d1ulqa1 25 DDLLAHALSVLVDRSGVPKEEVE-------DVYAGCANQA------------------------GEDNRNVARMALLLAG 73 (273)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCCS------------------------STTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHCC-------EEEEEecccc------------------------ccccccHHHHHHHHcC
Confidence 35788899999999999999888 6999976421 1122346778888888
Q ss_pred C--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEecccccc
Q 008700 316 W--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAV 358 (557)
Q Consensus 316 l--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~ 358 (557)
+ .-|.++|+..|+||+.||.+|++.|++|+.|++|+||+|.|.
T Consensus 74 lp~~vp~~tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~EsmS 118 (273)
T d1ulqa1 74 FPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMS 118 (273)
T ss_dssp CCTTCEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESS
T ss_pred CCCccceEEEecccchHHHHHHHHHHHHhcCCCccceeeeccccc
Confidence 8 349999999999999999999999999999999999999865
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1.2e-11 Score=112.71 Aligned_cols=119 Identities=16% Similarity=0.255 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+++|+++++|| -|++++.. +....+..+..+...|
T Consensus 49 ~~~ma~~Aa~~aL~~agi~~~dId-------lli~~s~t-------------------------~~~~~p~~a~~v~~~L 96 (172)
T d1ub7a1 49 TSDLAFKAVEDLLRRHPGALEGVD-------AVIVATNT-------------------------PDALFPDTAALVQARF 96 (172)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTTEE-------EEEEECSS-------------------------CSEEESCHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhhcCcccccce-------EEEEeccc-------------------------ccccccchHHHHHHHh
Confidence 567999999999999999998776 46666543 2233455677888999
Q ss_pred CCCCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCce
Q 008700 315 GWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 394 (557)
Q Consensus 315 gl~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v 394 (557)
|.+.+++.|..+|++++.+|..|..+|++|..+.+|++++|.+..- +. |+.....++
T Consensus 97 g~~~~~~di~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~S~~-----------~~------------~~d~~~~~l 153 (172)
T d1ub7a1 97 GLKAFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEALSKI-----------ID------------WNDRATAVL 153 (172)
T ss_dssp TCCCEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGT-----------SC------------TTCHHHHTT
T ss_pred ccCccceeehhccccHHHHHHHHhhhhhcCCcceeEEecccccccc-----------cC------------CCCcCeEEE
Confidence 9999999999999999999999999999999999999999973210 00 111223456
Q ss_pred ecCceEEEEEcchH
Q 008700 395 MGEGAGVLLLEELE 408 (557)
Q Consensus 395 ~gEGAaalvLe~~~ 408 (557)
+||||+|+||++.+
T Consensus 154 fGDgAaA~ll~~~~ 167 (172)
T d1ub7a1 154 FGDGGGAAVVGKVR 167 (172)
T ss_dssp BCCEEEEEEEECCC
T ss_pred ecceeEEEEEEEcC
Confidence 89999999998754
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1e-11 Score=113.39 Aligned_cols=119 Identities=20% Similarity=0.297 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+++++||+++|+++++|| -|++++..+ .......+..+...|
T Consensus 51 ~~~la~~Aa~~al~~a~~~~~~Id-------~li~~s~~~-------------------------~~~~P~~a~~v~~~L 98 (174)
T d1hnja1 51 VSTMGFEAATRAIEMAGIEKDQIG-------LIVVATTSA-------------------------THAFPSAACQIQSML 98 (174)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCC-------------------------SCSSSCHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhccccccccc-------EEEEecCCc-------------------------cccccchhhhhhhcc
Confidence 467999999999999999998777 577776532 223345688899999
Q ss_pred CCCC-CeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 315 GWMG-PNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl~G-p~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
|++. +++.|+.+|++++.||..|..+|++|..+.+|+.++|... .. +. ++.....+
T Consensus 99 gl~~~~~~di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~S-~~----------~~------------~~d~~~~~ 155 (174)
T d1hnja1 99 GIKGCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLA-RT----------CD------------PTDRGTII 155 (174)
T ss_dssp TCCSSCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHH-HH----------SC------------TTCHHHHT
T ss_pred CCCchhhhhhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehhh-cc----------cC------------CCCCCeEE
Confidence 9974 8999999999999999999999999999999999999732 11 10 11111235
Q ss_pred eecCceEEEEEcchH
Q 008700 394 VMGEGAGVLLLEELE 408 (557)
Q Consensus 394 v~gEGAaalvLe~~~ 408 (557)
++||||+|+||++.+
T Consensus 156 lfGDgA~A~vl~~~~ 170 (174)
T d1hnja1 156 IFGDGAGAAVLAASE 170 (174)
T ss_dssp TBCCEEEEEEEEEES
T ss_pred EeceeeEEEEEEeCC
Confidence 689999999999754
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=99.15 E-value=1e-10 Score=107.22 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|++++++| .|++++..+ .......+..+...+
T Consensus 58 ~~~ma~~Aa~~aL~~a~~~~~dId-------~li~~s~~~-------------------------~~~~p~~a~~v~~~l 105 (181)
T d1mzja1 58 IQVMGVAASRRALEHAGVDPAEID-------LVVVSTMTN-------------------------FVHTPPLSVAIAHEL 105 (181)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCC-------EEEEECSCC-------------------------CCCSSCHHHHHHHHH
T ss_pred HHHHhHHHHHhhhhhccCChhHCe-------EEEEeccCC-------------------------ccccccHHHHHHHhh
Confidence 467999999999999999998777 577776531 223344577888889
Q ss_pred CCC-CCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCc
Q 008700 315 GWM-GPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGF 393 (557)
Q Consensus 315 gl~-Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~ 393 (557)
+.. .+++.|+.+|++++.||..|..+|++|..+.+||.++|.+. .. +. ++.....+
T Consensus 106 ~~~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~s-~~----------~~------------~~d~~~~~ 162 (181)
T d1mzja1 106 GADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMT-DV----------ID------------LADRSLSF 162 (181)
T ss_dssp TCTTCEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEGG-GG----------SC------------SSCTTTTT
T ss_pred cCCCccceeHHhhhccHHHHHHHHhCHhhcCCCceeEEeeecccc-cc----------CC------------CCCcceEE
Confidence 884 58999999999999999999999999999999999999732 10 10 12223467
Q ss_pred eecCceEEEEEcch
Q 008700 394 VMGEGAGVLLLEEL 407 (557)
Q Consensus 394 v~gEGAaalvLe~~ 407 (557)
++||||+|+||++.
T Consensus 163 lfGDGAaA~ll~~~ 176 (181)
T d1mzja1 163 LFGDGAGAAVVGPS 176 (181)
T ss_dssp TBCEEEEEEEEEEE
T ss_pred EeeeeeEEEEEEeC
Confidence 89999999999864
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=7.5e-10 Score=107.55 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHH----CCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHH
Q 008700 236 MLYLLTAGKKALAD----GGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLA 311 (557)
Q Consensus 236 ~rl~l~aa~eALed----AGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia 311 (557)
..|+..+++++|++ +++++++|| .|++|+... .....+++..++
T Consensus 36 ~~L~~~~i~~~l~r~~~~~~idp~~Id-------~vi~G~v~~-------------------------~g~~~~~aR~~a 83 (269)
T d1afwa1 36 DYLLYNFLNEFIGRFPEPLRADLNLIE-------EVACGNVLN-------------------------VGAGATEHRAAC 83 (269)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTCGGGCC-------CEEEECSSS-------------------------BGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCChhhcC-------EEEeccccc-------------------------cccccccchhhh
Confidence 45677788888875 469998887 589997642 112334677888
Q ss_pred HhhCC--CCCeeeecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccc
Q 008700 312 MDLGW--MGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVI 359 (557)
Q Consensus 312 ~~lgl--~Gp~~tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~ 359 (557)
...|+ .-|.++|+..|+||+.||..|++.|++|+.|++|+||+|.|..
T Consensus 84 l~aglp~~vpa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~EsmS~ 133 (269)
T d1afwa1 84 LASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTN 133 (269)
T ss_dssp HHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHH
T ss_pred hhccccccccchhccccchHHHHHHHHHHHHHhhccccceeeeecccccc
Confidence 88887 4699999999999999999999999999999999999998753
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=2.4e-10 Score=96.73 Aligned_cols=100 Identities=18% Similarity=0.325 Sum_probs=79.1
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCc
Q 008700 414 GAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGL 492 (557)
Q Consensus 414 G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~ 492 (557)
|.+|+|+|.+++... ..|.-.+.+...+++++|+++|++.+|||+||.|..+.. -..+..+.++-. ..+
T Consensus 2 gl~plAri~~~a~~g-----~~P~~m~~gPv~Ai~klL~r~gl~~~Did~~EinEAFA~-----q~l~~~~~l~id~~kv 71 (124)
T d1afwa2 2 NLPVLGRYIDFQTVG-----VPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAA-----QALYCIHKLGIDLNKV 71 (124)
T ss_dssp TCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGGGCSEEEECCSBHH-----HHHHHHHHHTCCGGGB
T ss_pred CCcEEEEEEEEEEEe-----cCHHHhhhChHHHHHHHHHHcCCCcccCcEEEeccchhH-----HHHHHHHHcCCChhhc
Confidence 678999999998763 234555778899999999999999999999999966544 223334455532 357
Q ss_pred ccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 493 RVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 493 ~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+++...-.+|||.||||+..++.++.+|+++
T Consensus 72 N~~GGaiAlGHP~GaSGarlv~~l~~~L~~~ 102 (124)
T d1afwa2 72 NPRGGAIALGHPLGCTGARQVATILRELKKD 102 (124)
T ss_dssp STTCCHHHHCBCTTTHHHHHHHHHHHHSCTT
T ss_pred cccCccceecCCcCCchHHHHHHHHHHhccC
Confidence 7777777899999999999999999999865
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.90 E-value=3.4e-09 Score=100.95 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .|++.++.+ ...+.. ...+-..+
T Consensus 102 ~~~la~~Aa~~aL~~a~~~~~dId-------~lI~~t~t~-------------------------~~~p~~-~a~~~~~l 148 (235)
T d1bi5a1 102 VPRLGKEAAVKAIKEWGQPKSKIT-------HLIVCTTSG-------------------------VDMPGA-DYQLTKLL 148 (235)
T ss_dssp HHHHHHHHHHHHHHHHCSCGGGCC-------EEEEEESSC-------------------------CCSSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChhHCc-------EEEEecccC-------------------------CccCcc-HHHHHHHH
Confidence 446999999999999999998887 677776542 122222 44555666
Q ss_pred CCCCC--ee-eecCCChhHHHHHHHHHHHHHcCCCCEEEEeccccc
Q 008700 315 GWMGP--NY-SISTACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (557)
Q Consensus 315 gl~Gp--~~-tv~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~ 357 (557)
++... .+ .+..+|++++.+|..|..+|++|..+.|||+++|.+
T Consensus 149 ~~~~~~~~~~~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~~ 194 (235)
T d1bi5a1 149 GLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVT 194 (235)
T ss_dssp TCCTTCEEEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECG
T ss_pred hcCCCceEEeeecCccchHHHHHHHHHHHHHcCCCCeEEEEEeeec
Confidence 66443 23 457799999999999999999999999999999973
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.89 E-value=2.7e-09 Score=99.20 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhh
Q 008700 235 FMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDL 314 (557)
Q Consensus 235 ~~rl~l~aa~eALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~l 314 (557)
...|+.+|+++||+++|+++++|| .|++.++.+ ...+..+..+...+
T Consensus 75 a~~la~~Aa~~aL~~ag~~~~dId-------~lI~~s~t~--------------------------~~~P~~aa~v~~~l 121 (200)
T d1u0ma1 75 AKSRVPAVIQRALDDAELLATDID-------VIIYVSCTG--------------------------FMMPSLTAWLINEM 121 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCS-------EEEEECSSS--------------------------CCSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCChhhhh-------eEEEeccCC--------------------------CCcchhHHHHHHHH
Confidence 346999999999999999998887 566665431 11234677888999
Q ss_pred CCCC--Ceeee-cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccc
Q 008700 315 GWMG--PNYSI-STACATSNFCILNAANHIIRGEANVMLCGGSDAA 357 (557)
Q Consensus 315 gl~G--p~~tv-~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~ 357 (557)
|+.. +.+.+ ..+|++++.+|..|..+|++|..+.+||.++|.+
T Consensus 122 g~~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~~ 167 (200)
T d1u0ma1 122 GFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFC 167 (200)
T ss_dssp TCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEG
T ss_pred hcCCCeeEeccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEecc
Confidence 9865 45566 5799999999999999999999999999999973
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.85 E-value=4e-09 Score=89.08 Aligned_cols=98 Identities=24% Similarity=0.373 Sum_probs=74.2
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhc---CCCCc
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFG---QNRGL 492 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~---~~~~~ 492 (557)
+|+++|.+++... ..|...+.+...+++++|+++|++++|||+||.|..+.. ...+..+.++ +...+
T Consensus 1 KPlA~i~~~~~~g-----~~P~~~~~~P~~A~~~~L~r~gl~~~Did~~EinEAFAa-----q~l~~~~~~~l~~d~~kv 70 (125)
T d1ulqa2 1 RPLARVRAIAVAG-----VPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAA-----QALAVLREWSLSMEDQRL 70 (125)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHTTCCGGGCSEEEECCSBHH-----HHHHHHHHHTCCTTCTTB
T ss_pred CCeEEEEEEEEEe-----cCHHHHhhccHHHHHhHhhccCcCccccchheeccccch-----hHHHHHHHhhccCchhhc
Confidence 4689999998763 234444567789999999999999999999999855443 1222233333 12357
Q ss_pred ccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 493 RVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 493 ~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+++...-.+|||+||||+..++.++.+|++.
T Consensus 71 N~~GGaIAlGHP~GASGari~~tl~~~L~~~ 101 (125)
T d1ulqa2 71 NPNGGAIALGHPLGASGARILTTLVHEMRRR 101 (125)
T ss_dssp STTCCHHHHCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcccccCCccccchhHHHHHHHHHHhc
Confidence 7888888899999999999999999999864
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.84 E-value=2.6e-09 Score=90.09 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=76.9
Q ss_pred eeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC-CCccc
Q 008700 416 KIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRV 494 (557)
Q Consensus 416 ~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~-~~~~v 494 (557)
+|+++|.++.... ..|.-.+.+...+++++|+++|++.+|||+||.|..+.. -..+..+.++-. ..+++
T Consensus 2 ~Plari~~~a~~g-----~dP~~mg~~Pv~A~~~lL~r~gl~~~Did~~EinEAFA~-----q~la~~~~l~id~~kvN~ 71 (124)
T d1m3ka2 2 QPLGRIVSWATVG-----VDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAA-----QACAVNKDLGWDPSIVNV 71 (124)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCSEEEECCSBHH-----HHHHHHHHHCCCGGGBST
T ss_pred CcEEEEEEEEEEe-----cChHHhccchHHHHHHHHHHcCCChhcccHHHhcccchh-----heeeehHhhCCChhhcCC
Confidence 5789999998753 234445667889999999999999999999999965444 233445556532 45778
Q ss_pred ccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 495 NSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 495 ~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
+...-.+|||+||||+..++.++.+|++.
T Consensus 72 ~GGaiAlGHP~GaSGarl~~tl~~~L~~~ 100 (124)
T d1m3ka2 72 NGGAIAIGHPIGASGARILNTLLFEMKRR 100 (124)
T ss_dssp TCCHHHHCCCTTTHHHHHHHHHHHHHHHH
T ss_pred CCCccccccCcCccchhHHHHHHHHHHhc
Confidence 88888899999999999999999999863
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.81 E-value=4.4e-09 Score=89.28 Aligned_cols=100 Identities=17% Similarity=0.319 Sum_probs=75.1
Q ss_pred CCeeeEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCC----
Q 008700 414 GAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN---- 489 (557)
Q Consensus 414 G~~i~a~I~G~~~~~d~~~~~~~~p~~~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~---- 489 (557)
|.+++++|.+++... ..|...+.+...+++++|+++|++.+|||++|.|..+.. ...+..+.++..
T Consensus 1 Gl~pla~i~~~~~~g-----~dP~~mg~~p~~A~~klL~ragl~~~did~~EinEAFA~-----q~l~~~~~~~~~~~~~ 70 (128)
T d1wdkc2 1 GLEPLAVIRSMAVAG-----VDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAA-----QALPVLKDLKVLDKMN 70 (128)
T ss_dssp TCCCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCCEEEECCSBHH-----HHHHHHHHTTCGGGHH
T ss_pred CCCEEEEEEEEEEEe-----cCHHHhccCcHHHHHHHhhhcCccccccceEEeecccch-----hhhhhhhhcccccCCc
Confidence 578899999998763 234444667889999999999999999999999855422 112222222211
Q ss_pred CCcccccCcccccchhhhHHHHHHHHHHHHHHcC
Q 008700 490 RGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRTG 523 (557)
Q Consensus 490 ~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~~ 523 (557)
.+++++...-.+|||+||||+..++.++.+|++.
T Consensus 71 ekvN~~GGaiAlGHP~GASGaRlv~~l~~~L~~~ 104 (128)
T d1wdkc2 71 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN 104 (128)
T ss_dssp HHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ceecCCCCcccccccccccchhHHHHHHHHHHhc
Confidence 2467777777899999999999999999999864
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=98.65 E-value=1.6e-08 Score=90.98 Aligned_cols=160 Identities=11% Similarity=0.103 Sum_probs=103.0
Q ss_pred EEEEecceeccCC-CCHHHHHHHHHcCCCcceeccCCCCCCCCccccccccCCCCCCCCChhhhccCCHHHHHHHHHHHH
Q 008700 167 VVVTGMGLVSPLG-HEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKK 245 (557)
Q Consensus 167 IaItG~g~~~P~g-~~~~~lw~~L~~G~~~i~~~~~~~~~~~~~~~~g~i~~fd~~~~i~p~~~~~md~~~rl~l~aa~e 245 (557)
|-|.|+|..+|.- .+.+++.+.. |.+. ..+ .+..+...+ .+..+.| ....|++.|+++
T Consensus 2 VgI~~~~~ylP~~~v~~~e~~~~~--g~~~-~~i--~~~~Gi~~r-----------~~~~~~E-----~~~~ma~~Aa~~ 60 (166)
T d1xpma1 2 IGIDKINFYVPKYYVDMAKLAEAR--QVDP-NKF--LIGIGQTEM-----------AVSPVNQ-----DIVSMGANAAKD 60 (166)
T ss_dssp EEEEEEEEECCSEEEEHHHHHHHT--TSCH-HHH--HTTTCCSEE-----------EECCTTC-----CHHHHHHHHHHT
T ss_pred eeEeEEEEECCCeEEcHHHHHHHh--CCCH-HHH--HHhcCcEEE-----------EeCCCcc-----CHHHHHHHHHHh
Confidence 7799999999998 6777765542 2210 000 000011000 0112222 134588888888
Q ss_pred HHHHCCCChhhhhcccCCceEEEEeccCCchhhHHHHHHHHHhhhccCCCccccccccchhHHHHHHhhCCCC--Ceeee
Q 008700 246 ALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMG--PNYSI 323 (557)
Q Consensus 246 ALedAGl~~~~i~~~~~~r~gV~vG~~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~lgl~G--p~~tv 323 (557)
+|++.+ ++++| -+++++.. +.......+..+...+|+.. .++.+
T Consensus 61 al~~~~--~~~id-------~li~~t~~-------------------------~~~~~p~~a~~v~~~lg~~~~~~~~dv 106 (166)
T d1xpma1 61 IITDED--KKKIG-------MVIVATES-------------------------AVDAAKAAAVQIHNLLGIQPFARCFEM 106 (166)
T ss_dssp TCCHHH--HHHEE-------EEEEECSS-------------------------CSBSSSCHHHHHHHHTTCCSSCEEEEE
T ss_pred hhcccc--CCCCC-------eEEEeccc-------------------------cccccchhHHHHHHhhccccceEEeee
Confidence 876543 44343 24455432 22334556788888999864 77999
Q ss_pred cCCChhHHHHHHHHHHHHHcCCCCEEEEeccccccchhhHHHHHHhhhhhccCCCCCCCCCCCcCCCCCceecCceEEEE
Q 008700 324 STACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMGEGAGVLL 403 (557)
Q Consensus 324 ~~aCaSgl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~Ls~~~~~p~~~~rpfd~~~dG~v~gEGAaalv 403 (557)
..+|++++.||..|..+|++|..+.+||.+.|..... ++ ..+-+.+||||+|+|
T Consensus 107 ~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~~~~~-------------------------~~-~~~~~~fGDGA~A~l 160 (166)
T d1xpma1 107 KEACYAATPAIQLAKDYLATRPNEKVLVIATDTARYG-------------------------LN-SGGEPTQGAGAVAMV 160 (166)
T ss_dssp ESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEEECCC-------------------------TT-CSSGGGCEEEEEEEE
T ss_pred cccHHHHHHHHHHHhhHHhcCCCCeEEEEEEceEecc-------------------------CC-CCCCccCCCeeEEEE
Confidence 9999999999999999999999999999999862110 01 112356899999999
Q ss_pred Ecch
Q 008700 404 LEEL 407 (557)
Q Consensus 404 Le~~ 407 (557)
|++.
T Consensus 161 l~~~ 164 (166)
T d1xpma1 161 IAHN 164 (166)
T ss_dssp EEES
T ss_pred EecC
Confidence 9863
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=97.10 E-value=2.1e-05 Score=61.25 Aligned_cols=48 Identities=8% Similarity=-0.069 Sum_probs=43.5
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHH
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQR 130 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~ 130 (557)
+..|.+| +|||.+||++++|....|+. ++.+.+|+|||+..+..+...
T Consensus 29 d~~f~dlG~DSl~~~el~~~le~~~g~~-----l~~~~~~~~~Ti~~l~~~v~~ 77 (82)
T d1or5a_ 29 DTPFVDLGYDSLALLETAAVLQQRYGIA-----LTDETVGRLGTPRELLDEVNT 77 (82)
T ss_dssp SSCHHHHSCCHHHHHHHHHHHHTTSCCC-----CSHHHHHHCCCSHHHHHHHTT
T ss_pred CcCHHHcCCChHhHHHHHHHHHHHHhCc-----CCHHHHHcCCCHHHHHHHHHh
Confidence 5789999 99999999999999999999 999999999999987776443
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=96.90 E-value=7.1e-05 Score=58.70 Aligned_cols=50 Identities=8% Similarity=-0.105 Sum_probs=45.2
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
.+..|.+| +||+.++|+++++....|+. ++.+.+|+|||+..+......+
T Consensus 31 ~d~~f~dlG~DSl~~~~l~~~l~~~~g~~-----l~~~~~~~~~Tv~~l~~~i~~~ 81 (86)
T d2af8a_ 31 LDLRFEDIGYDSLALMETAARLESRYGVS-----IPDDVAGRVDTPRELLDLINGA 81 (86)
T ss_dssp CSSSHHHHTCSSHHHHHHHHHHHHHHTCC-----CCCSTTTTCCCHHHHHHHHHHH
T ss_pred cCCCHHHcCCCHHHHHHHHHHHHHHHccC-----cCHHHHHcCCCHHHHHHHHHHH
Confidence 36789999 99999999999999999999 9999999999999888776555
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=96.76 E-value=8.2e-05 Score=59.49 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=45.0
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
+..|.+| +|||.++||.++|....|+. ++.+.+|+|||+..+..+...+
T Consensus 31 d~~f~dlG~DSl~~~el~~~le~~~gv~-----l~~~~~~~~~Ti~~l~~~l~~~ 80 (95)
T d1nq4a_ 31 DVAFDALGYDSLALLNTVGRIERDYGVQ-----LGDDAVEKATTPRALIEMTNAS 80 (95)
T ss_dssp SSCHHHHTCCSHHHHHHHHHHHHHTCCC-----SCTTHHHHCCSHHHHHHHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHHhcCC-----CCHHHHhcCCCHHHHHHHHHHh
Confidence 6789999 99999999999999999998 9999999999999888776665
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.025 Score=48.18 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHH
Q 008700 442 GVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIR 521 (557)
Q Consensus 442 ~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~ 521 (557)
.+.++|+++|+++|++++|||++..|..+.. -.+++.+.++-...-.+...-..+||+.+|+=.+.+.. +++
T Consensus 49 ~v~~~i~~~L~~~gl~~~dId~~i~Hqa~~~-----i~~~v~~~lgl~~ek~~~~~~~~~GNt~sasip~~L~~---a~~ 120 (148)
T d1u6ea2 49 KMGDVGRRAMDAAGVRPDQIDVFVPHQANSR-----INELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAE---LLT 120 (148)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEEECCSCHH-----HHHHHHHHHTCCTTCEECCTHHHHCBCGGGHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHcCCCcccccEEEeccccHH-----HHHHHHHhcCCCchhhhhhhHHhhCCCccchHHHHHHH---HHH
Confidence 4567899999999999999999999965544 35566666764321112223456799988876655554 455
Q ss_pred cCCCCC
Q 008700 522 TGWIHP 527 (557)
Q Consensus 522 ~~~lpp 527 (557)
.+.+.|
T Consensus 121 ~g~i~~ 126 (148)
T d1u6ea2 121 TGAAKP 126 (148)
T ss_dssp HTSSCT
T ss_pred cCCCCC
Confidence 665543
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.77 E-value=0.0019 Score=48.89 Aligned_cols=40 Identities=10% Similarity=-0.059 Sum_probs=35.2
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCch
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNST 122 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~ 122 (557)
....|.+| +|||+++|++|++....|.. ++.+.+|. +|..
T Consensus 27 ~~~~f~~lG~DSl~a~el~~~i~~~~g~~-----l~~~~l~~-~Ti~ 67 (76)
T d2pnga1 27 LDSSLADLGLDSLMGVEVRQILEREHDLV-----LPIREVRQ-LTLR 67 (76)
T ss_dssp SSSCHHHHTCSSHHHHHHHHHHHHHTCCC-----CCHHHHTT-CCSH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhCCC-----CCHHHHHH-hhHH
Confidence 46899999 99999999999999999988 99988774 6655
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.12 E-value=0.0093 Score=48.65 Aligned_cols=49 Identities=12% Similarity=-0.041 Sum_probs=42.3
Q ss_pred chhhH-Hh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 78 SHSIQ-SL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 78 ~~~~~-~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
...|. +| +|||..+||.++|....|+. ++.+.+|++||...+.......
T Consensus 30 ~~~~~~dlG~DSl~~~~l~~~le~~f~i~-----i~~~~~~~~~Tv~~l~~~l~~~ 80 (115)
T d1klpa_ 30 EKSFVDDLDIDSLSMVEIAVQTEDKYGVK-----IPDEDLAGLRTVGDVVAYIQKL 80 (115)
T ss_dssp TCCTTTTTCSHHHHHHHHHHHHHHHTCCC-----CCHHHHTTCCSHHHHHHHHHHH
T ss_pred ccchhhhcccchhHHHHHHHHHHHHHCCC-----CCHHHHHhCccHHHHHHHHHHH
Confidence 45664 79 99999999999999999888 9999999999999887776554
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=93.73 E-value=0.0029 Score=47.79 Aligned_cols=45 Identities=7% Similarity=-0.058 Sum_probs=39.9
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhH
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNR 127 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~ 127 (557)
...|-++ .|||+++++.+++....|.. ++.+.+|+|||...++++
T Consensus 28 ~~~f~~lG~dSl~a~~l~~~i~~~~~~~-----l~~~~l~~~pTi~~LA~~ 73 (76)
T d2gdwa1 28 LDNFFQIGGHSLKAMAVAAQVHREYQVE-----LPLKVLFAQPTIKALAQY 73 (76)
T ss_dssp TTTSSTTTCTTHHHHHHHHHHHHTTSSC-----CTTHHHHHSCSHHHHHHH
T ss_pred CCCHHHcCCChHHHHHHHHHHHHHHCCC-----CCHHHHHcCCCHHHHHHH
Confidence 5688899 99999999999999998887 999999999998866554
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=92.99 E-value=0.066 Score=45.46 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 443 VILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 443 ~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+..+|+++|+++|++++|||++..|..+... .+.+.+.++-...- +...-..+||+.+|+=.+.|. ..++.
T Consensus 49 vp~~i~~~L~~~g~~~~dId~~i~Hqa~~~~-----~~~i~~~lgi~~~k-~~~~~~~~Gn~~sasip~~L~---~~~~~ 119 (149)
T d1ub7a2 49 MNTATLEAIEKAGLTPEDIRLFVPHQANLRI-----IDAARERLGLPWER-VAVNVDRYGNTSTASIPLALK---EAVDA 119 (149)
T ss_dssp HHHHHHHHHHHHTCCGGGCSEEEECCSCHHH-----HHHHHHTTTCCGGG-BCCCHHHHCBCGGGHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhhccccccccEEEeeccchHH-----HHHHHhhccchhhH-HHHHHHHhcCCcchhHHHHHH---HHHHc
Confidence 4578999999999999999999999655442 34444444422111 112234579998887554443 45566
Q ss_pred CCCCC
Q 008700 523 GWIHP 527 (557)
Q Consensus 523 ~~lpp 527 (557)
+.+.|
T Consensus 120 ~~~~~ 124 (149)
T d1ub7a2 120 GRIRE 124 (149)
T ss_dssp TSSCT
T ss_pred CCCCC
Confidence 66544
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=92.85 E-value=0.12 Score=43.94 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHH
Q 008700 442 GVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIR 521 (557)
Q Consensus 442 ~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~ 521 (557)
.+.++++++|+++|++++|||++..|..+.. -.+.+.+.++-...-.+...-..+||+.+|+=.+. +...++
T Consensus 49 ~vp~~i~~~L~~~gl~~~dId~~i~Hq~~~~-----~~~~v~~~lgi~~ek~~~~~~~~~GNt~Sasip~~---L~~~~~ 120 (153)
T d1mzja2 49 DVVPAAREALEVAGLTVGDLVAFVPHQANLR-----IIDVLVDRLGVPEHVVVSRDAEDTGNTSSASVALA---LDRLVR 120 (153)
T ss_dssp HHHHHHHHHHHTTTCCGGGCSEEEECCSCHH-----HHHHHHHHHTCCTTSEECCTHHHHCBCTTHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCCEEEEcCCcHH-----HHHHHHHHhCCCchhcchhhhhhcCCcccchHHHH---HHHHHH
Confidence 4567899999999999999999999965544 44566666663221112222345788877753322 333556
Q ss_pred cCCCCC
Q 008700 522 TGWIHP 527 (557)
Q Consensus 522 ~~~lpp 527 (557)
++.+.+
T Consensus 121 ~~~~~~ 126 (153)
T d1mzja2 121 SGAVPG 126 (153)
T ss_dssp HTSSCT
T ss_pred cCCCCC
Confidence 665543
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=91.97 E-value=0.0091 Score=45.79 Aligned_cols=49 Identities=4% Similarity=-0.053 Sum_probs=43.7
Q ss_pred chhhHHh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhhHHHHh
Q 008700 78 SHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLNRRQRR 131 (557)
Q Consensus 78 ~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~~~~~~ 131 (557)
...|.+| +||+..+|+.+++....|+. ++...+|++||...+......+
T Consensus 31 ~~~~~dlG~DSl~~v~l~~~ie~~f~i~-----i~~~~~~~~~Tv~~l~~~i~~~ 80 (85)
T d1vkua_ 31 ENTFKELGFDSIDVIDLVMFFEDEFALR-----IEDEEISKIRKVKDLIDIVIKK 80 (85)
T ss_dssp TSBTTTTTCCHHHHHHHHHHHHHHHTCC-----CCHHHHTTCCBHHHHHHHHHHH
T ss_pred CCCHHHhcCcchHHHHHHHHHHHHccCC-----CCHHHHHHcCCHHHHHHHHHHH
Confidence 5789999 99999999999999999998 9999999999998777665544
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=91.71 E-value=0.21 Score=41.79 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHHc
Q 008700 443 VILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIRT 522 (557)
Q Consensus 443 ~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~~ 522 (557)
+.++++++|+++|++++|||++..|..+... .+.+.+.++-... .+...-..+||+.+|+=.+.+-. .++.
T Consensus 46 ~~~~i~~~L~~~g~~~~dId~~i~Hq~~~~~-----~~~~~~~l~l~~~-k~~~~~~~~GN~~sasip~~L~~---~~~~ 116 (143)
T d1hnja2 46 LAHIVDETLAANNLDRSQLDWLVPHQANLRI-----ISATAKKLGMSMD-NVVVTLDRHGNTSAASVPCALDE---AVRD 116 (143)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEEECCSCHHH-----HHHHHHHTTCCGG-GBCCCHHHHCBCGGGHHHHHHHH---HHHT
T ss_pred hhHHHHHHHHHhhhcccccceEEeccCchHH-----HHHHHHhCccchh-hhhhhhhhhcccccchHHHHHHH---HHHh
Confidence 4678999999999999999999999765553 3445555553211 12223446799988875554443 4566
Q ss_pred CCC
Q 008700 523 GWI 525 (557)
Q Consensus 523 ~~l 525 (557)
+.+
T Consensus 117 ~~~ 119 (143)
T d1hnja2 117 GRI 119 (143)
T ss_dssp TCS
T ss_pred CCC
Confidence 655
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=91.06 E-value=0.0081 Score=44.94 Aligned_cols=44 Identities=11% Similarity=-0.097 Sum_probs=38.0
Q ss_pred chhhH-Hh-hhcccCcccccccccccccccCCCCCccccccCCCCchhhhh
Q 008700 78 SHSIQ-SL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFGSNNSTATLN 126 (557)
Q Consensus 78 ~~~~~-~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~~p~~~a~~~ 126 (557)
...|. +| +|||..+|+.+++....|.. ++...+|+++|...+..
T Consensus 26 ~~~~~~DlG~DSl~~vel~~~le~~f~i~-----i~~~~~~~~~Tv~~l~~ 71 (74)
T d1f80d_ 26 EASFKEDLGADXLDVVELVMELEDEFDME-----ISDEDAEKIATVGDAVN 71 (74)
T ss_dssp TCBHHHHSCCCHHHHHHHHHHHHHHTTCC-----CCHHHHHHCCBHHHHHH
T ss_pred CccHHHhcCccHhHHHHHHHHHHHHhCCC-----CCHHHHhcCCCHHHHHH
Confidence 45674 79 99999999999999999999 99999999998875443
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=89.56 E-value=0.18 Score=42.52 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCC-Ccccc-cCcccccchhhhHHHHHHHHHHH
Q 008700 441 VGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVN-STKSMIGHLLGAAGAVEAIAVVQ 518 (557)
Q Consensus 441 ~~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~-~~~v~-s~K~~iGH~~gAaG~~~li~~~~ 518 (557)
..+..+++++|+++|++++|||++..|-.+.. -.+.+.+.++-.. .+..+ .+-..+||+.+|+=... .-.
T Consensus 43 ~~~~~~i~~~l~~~g~~~~did~~~~Hq~~~~-----i~~~i~~~Lgl~~~k~~~s~~~l~~~GN~~sasi~~~---L~~ 114 (148)
T d1u0ma2 43 EPLAPALKELAGEHGWDASDLDFYIVHAGGPR-----ILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDA---LRR 114 (148)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSCCEEECSHHH-----HHHHHHHHSCSCGGGGHHHHHHHHHTCBCTTHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEECCCCHH-----HHHHHHHHhCCChhhhhHHHHHHHhcCCCCcchHHHH---HHH
Confidence 45678899999999999999999999955444 3455666665321 11110 12244699988873332 334
Q ss_pred HHHcCCCCC
Q 008700 519 AIRTGWIHP 527 (557)
Q Consensus 519 ~l~~~~lpp 527 (557)
.++++.+.+
T Consensus 115 ~~~~~~~~~ 123 (148)
T d1u0ma2 115 LFDEGGVEE 123 (148)
T ss_dssp HHHSCCCCS
T ss_pred HHHcCCCCC
Confidence 556666544
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=88.19 E-value=0.04 Score=41.86 Aligned_cols=49 Identities=4% Similarity=-0.157 Sum_probs=41.0
Q ss_pred CchhhHHh-hhcccCcccccccccccccccCCCCCccccccC--CCCchhhhhHHHH
Q 008700 77 SSHSIQSL-MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFFG--SNNSTATLNRRQR 130 (557)
Q Consensus 77 ~~~~~~~~-~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f~--~p~~~a~~~~~~~ 130 (557)
.+..|.+| +|||.++||.++|....|+. .|...+|. +||..++......
T Consensus 24 ~~~~f~dlG~DSl~~~~l~~~le~~f~v~-----i~~~~l~~~~~~Ti~~la~~i~~ 75 (83)
T d2jq4a1 24 DEADLYAAGLSSFASVQLMLGIEEAFDIE-----FPDNLLNRKSFASIKAIEDTVKL 75 (83)
T ss_dssp TTSCGGGGTCCHHHHHHHHHHHHHHHSCC-----CCHHHHSSGGGGCHHHHHHHHHH
T ss_pred CCCCHHHHhCccHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHhhHHHHHHHHHH
Confidence 36789999 99999999999999999988 99888886 4888766665443
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=86.77 E-value=0.052 Score=40.90 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=38.9
Q ss_pred chhhHHh--hhcccCcccccccccccccccCCCCCcccccc--CCCCchhhhhHHH
Q 008700 78 SHSIQSL--MASCLPFEPCNEYYSSVSSLGFFGDNGFSSFF--GSNNSTATLNRRQ 129 (557)
Q Consensus 78 ~~~~~~~--~dsl~~~e~rn~l~~~~g~~~fgg~~~~~l~f--~~p~~~a~~~~~~ 129 (557)
+..|.++ +|||.+|||.+++....|+. .+.+.+| +++|+.++.....
T Consensus 27 d~~l~e~gglDSl~~vel~~~ie~~fgi~-----i~~~~l~~~~~~Tv~~l~~~v~ 77 (80)
T d1dv5a_ 27 DLNLFETGLLDSMGTVQLLLELQSQFGVD-----APVSEFDRKEWDTPNKIIAKVE 77 (80)
T ss_dssp SCCSSTTSSCCSHHHHHHHHHHTTTSCCC-----CCCSSCCTTTTTSHHHHHHHHH
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHCCC-----CCHHHhhHHhCCCHHHHHHHHH
Confidence 4556564 79999999999999999988 9999998 7899987766543
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=83.03 E-value=0.81 Score=40.29 Aligned_cols=77 Identities=21% Similarity=0.080 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEcCCCCccCcHHHHHHHHHHhcCCCCcccccCcccccchhhhHHHHHHHHHHHHHH
Q 008700 442 GVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLGAAGAVEAIAVVQAIR 521 (557)
Q Consensus 442 ~~~~ai~~aL~~Agl~~~dId~ve~hgtgt~~~D~~E~~Al~~~~~~~~~~~v~s~K~~iGH~~gAaG~~~li~~~~~l~ 521 (557)
-..++++++|+++|++++|||+|... +.|...-+.-...+...++-...+. --.+.+...++++..|-.+...++
T Consensus 78 la~~Aa~~aL~~ag~~~~dId~lI~~-s~t~~~~P~~aa~v~~~lg~~~~~~----~~~i~~~gC~g~~~al~~A~~~l~ 152 (200)
T d1u0ma1 78 RVPAVIQRALDDAELLATDIDVIIYV-SCTGFMMPSLTAWLINEMGFDSTTR----QIPIAQLGCAAGGAAINRAHDFCT 152 (200)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEEE-CSSSCCSSCHHHHHHHHTTCCTTCE----EEEECSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhhheEEEe-ccCCCCcchhHHHHHHHHhcCCCee----EeccccchhhHHHHHHHHHHHHHH
Confidence 34679999999999999999998654 4443222222222333343221111 112234455666666666666666
Q ss_pred cC
Q 008700 522 TG 523 (557)
Q Consensus 522 ~~ 523 (557)
.+
T Consensus 153 ~~ 154 (200)
T d1u0ma1 153 AY 154 (200)
T ss_dssp HS
T ss_pred hC
Confidence 65
|