Query 008702
Match_columns 557
No_of_seqs 156 out of 1530
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361 Chaperonin complex com 100.0 6E-114 1E-118 837.3 39.8 531 4-537 1-531 (543)
2 cd03340 TCP1_eta TCP-1 (CTT or 100.0 5E-107 1E-111 883.6 59.2 518 11-530 4-521 (522)
3 TIGR02345 chap_CCT_eta T-compl 100.0 3E-106 7E-111 875.8 57.6 518 7-529 2-520 (522)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 8E-106 2E-110 871.1 60.1 513 10-532 3-529 (531)
5 PTZ00212 T-complex protein 1 s 100.0 1E-105 3E-110 871.9 60.5 521 4-532 3-529 (533)
6 TIGR02339 thermosome_arch ther 100.0 9E-106 2E-110 873.4 58.1 508 11-528 4-519 (519)
7 cd03336 TCP1_beta TCP-1 (CTT o 100.0 6E-105 1E-109 865.1 60.8 512 12-531 2-516 (517)
8 TIGR02344 chap_CCT_gamma T-com 100.0 2E-105 5E-110 871.3 57.8 510 11-530 4-523 (525)
9 cd03343 cpn60 cpn60 chaperonin 100.0 4E-105 8E-110 869.5 58.1 508 11-528 3-516 (517)
10 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-104 3E-109 864.8 57.6 504 18-530 3-527 (527)
11 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1E-104 2E-109 865.7 56.0 511 10-527 8-526 (526)
12 TIGR02343 chap_CCT_epsi T-comp 100.0 3E-104 7E-109 860.7 57.2 514 8-528 10-531 (532)
13 TIGR02341 chap_CCT_beta T-comp 100.0 4E-103 8E-108 849.8 59.4 513 11-531 2-517 (519)
14 TIGR02342 chap_CCT_delta T-com 100.0 5E-103 1E-107 850.4 57.2 502 18-528 4-516 (517)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 8E-103 2E-107 850.3 57.3 503 17-528 2-515 (515)
16 TIGR02340 chap_CCT_alpha T-com 100.0 2E-102 3E-107 849.7 59.4 509 17-533 6-534 (536)
17 TIGR02346 chap_CCT_theta T-com 100.0 4E-102 9E-107 843.6 59.1 514 10-535 4-526 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 2E-101 4E-106 830.3 54.9 479 13-529 2-483 (484)
19 KOG0363 Chaperonin complex com 100.0 5E-101 1E-105 742.4 39.0 520 7-534 2-524 (527)
20 KOG0358 Chaperonin complex com 100.0 1E-100 3E-105 742.8 35.1 502 17-528 20-533 (534)
21 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.4E-99 1E-103 812.1 50.2 466 11-527 4-479 (480)
22 COG0459 GroL Chaperonin GroEL 100.0 3.4E-97 7E-102 792.0 50.3 505 15-533 3-518 (524)
23 cd00309 chaperonin_type_I_II c 100.0 7.3E-96 2E-100 787.5 53.4 459 18-527 3-464 (464)
24 cd03341 TCP1_theta TCP-1 (CTT 100.0 8.5E-96 2E-100 785.1 52.4 459 20-528 5-471 (472)
25 PRK00013 groEL chaperonin GroE 100.0 4.3E-93 9.3E-98 770.6 53.3 476 17-547 4-538 (542)
26 PRK12849 groEL chaperonin GroE 100.0 4.1E-92 8.9E-97 763.0 54.0 463 17-532 4-526 (542)
27 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 4.5E-92 9.8E-97 765.3 52.0 483 35-530 1-485 (485)
28 PRK12850 groEL chaperonin GroE 100.0 6.4E-91 1.4E-95 754.9 53.8 477 17-545 5-541 (544)
29 PRK12851 groEL chaperonin GroE 100.0 1.1E-90 2.3E-95 752.7 53.2 466 17-534 5-529 (541)
30 PTZ00114 Heat shock protein 60 100.0 3.7E-90 7.9E-95 751.5 54.4 466 17-533 16-544 (555)
31 PRK12852 groEL chaperonin GroE 100.0 9E-90 2E-94 747.7 53.5 467 17-535 5-531 (545)
32 cd03344 GroEL GroEL_like type 100.0 2.2E-89 4.9E-94 739.9 52.4 457 18-527 3-519 (520)
33 TIGR02348 GroEL chaperonin Gro 100.0 7E-89 1.5E-93 737.5 52.0 461 17-530 3-523 (524)
34 CHL00093 groEL chaperonin GroE 100.0 7.2E-88 1.6E-92 730.4 49.7 463 17-531 4-527 (529)
35 PRK14104 chaperonin GroEL; Pro 100.0 1.8E-87 3.9E-92 727.3 52.7 467 17-535 5-531 (546)
36 KOG0364 Chaperonin complex com 100.0 3.7E-90 8.1E-95 681.4 27.6 517 5-531 1-523 (527)
37 PLN03167 Chaperonin-60 beta su 100.0 7.2E-87 1.6E-91 726.1 49.7 469 17-534 58-586 (600)
38 KOG0360 Chaperonin complex com 100.0 2.2E-87 4.7E-92 667.8 31.1 510 17-534 13-541 (545)
39 KOG0362 Chaperonin complex com 100.0 2.3E-85 5E-90 657.8 44.0 513 5-532 7-524 (537)
40 KOG0359 Chaperonin complex com 100.0 9.7E-84 2.1E-88 635.0 26.7 500 17-531 11-517 (520)
41 KOG0357 Chaperonin complex com 100.0 5.5E-67 1.2E-71 502.1 21.3 374 17-530 22-397 (400)
42 KOG0356 Mitochondrial chaperon 100.0 1.9E-60 4E-65 485.8 30.7 461 17-533 18-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 4.5E-39 9.7E-44 318.8 25.4 228 172-409 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 3.2E-36 6.9E-41 290.7 23.1 205 156-405 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 2E-22 4.3E-27 226.1 15.9 232 173-414 332-575 (1598)
46 COG1433 Uncharacterized conser 41.4 81 0.0018 27.4 5.9 39 279-318 56-94 (121)
47 cd00851 MTH1175 This uncharact 38.3 51 0.0011 27.0 4.3 44 279-324 54-97 (103)
48 PF02579 Nitro_FeMo-Co: Dinitr 36.2 71 0.0015 25.6 4.7 44 279-324 44-87 (94)
49 cd00562 NifX_NifB This CD repr 31.9 96 0.0021 25.3 4.9 38 280-318 53-90 (102)
50 PF12846 AAA_10: AAA-like doma 28.3 1.3E+02 0.0028 29.7 6.1 57 276-332 241-302 (304)
51 PRK13600 putative ribosomal pr 26.7 2.1E+02 0.0047 23.1 5.7 50 277-326 18-71 (84)
52 TIGR00129 fdhD_narQ formate de 24.9 69 0.0015 31.4 3.2 43 278-320 182-224 (237)
53 cd01143 YvrC Periplasmic bindi 24.1 1.7E+02 0.0037 26.8 5.7 51 281-331 53-110 (195)
54 KOG2663 Acetolactate synthase, 23.5 85 0.0018 30.8 3.3 29 373-402 121-149 (309)
55 PRK00724 formate dehydrogenase 23.0 77 0.0017 31.6 3.2 43 278-320 211-253 (263)
56 PRK07714 hypothetical protein; 22.0 2.8E+02 0.0061 22.9 5.9 50 279-331 25-78 (100)
57 PRK07283 hypothetical protein; 20.9 2.9E+02 0.0064 22.8 5.8 50 279-331 25-78 (98)
58 PRK13601 putative L7Ae-like ri 20.5 3.2E+02 0.007 21.9 5.7 51 279-332 15-69 (82)
59 PRK13602 putative ribosomal pr 20.5 3.1E+02 0.0067 21.9 5.6 52 278-332 17-72 (82)
60 cd01144 BtuF Cobalamin binding 20.1 2.2E+02 0.0047 27.3 5.7 52 281-332 50-108 (245)
No 1
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-114 Score=837.30 Aligned_cols=531 Identities=76% Similarity=1.144 Sum_probs=517.0
Q ss_pred ccchhHhhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHH
Q 008702 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (557)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~ 83 (557)
||+||..+|++|++.++|.-.+.+|+.||..+++.++|||||+|++|+|++..|+++|||||+||||-|++-||+++.|+
T Consensus 1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 008702 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (557)
Q Consensus 84 ~~a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~ 163 (557)
+.+++||.++||||||+|+|++++|+++-.+++.|+||..|+++|++|...|++.++++++.++..+...-++.|++.|.
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~ 160 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA 160 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887766667899999999
Q ss_pred HhhccCccCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEe
Q 008702 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (557)
Q Consensus 164 tsl~sk~~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~ 243 (557)
|+++||++.+..++|+++++||+..+....+.+.|.|++++||+++||.+++|+-|.+.|.+.+|+.+|+++.||||+++
T Consensus 161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~L 240 (543)
T KOG0361|consen 161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 240 (543)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEE
Confidence 99999999999999999999999998743378999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHH
Q 008702 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (557)
Q Consensus 244 ~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le 323 (557)
|-.||.+.++.++++.+.++++++.+++.||+.+.++++++...|++||++.-.|+|.+.+||++++|+|-++++.+||.
T Consensus 241 nvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~ 320 (543)
T KOG0361|consen 241 NVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN 320 (543)
T ss_pred eeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHh
Q 008702 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (557)
Q Consensus 324 ~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~ 403 (557)
|+..++|++|.++..++.+..||+|..|++.++|.+||-+|+||+..+.||++|||+.++.++|.+|++|||++++|.++
T Consensus 321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrral 400 (543)
T KOG0361|consen 321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRAL 400 (543)
T ss_pred HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEE
Q 008702 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (557)
Q Consensus 404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gi 483 (557)
++..||+|||++||++++.|++|+.++.+++|+.+.+|++|||.|||+||+|+|+|..+++.+||..|++ |. .|+|+
T Consensus 401 kn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~--G~-~w~Gv 477 (543)
T KOG0361|consen 401 KNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQ--GE-KWYGV 477 (543)
T ss_pred ccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhc--CC-ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 88 99999
Q ss_pred ecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCccccc
Q 008702 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGE 537 (557)
Q Consensus 484 d~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~~~~~ 537 (557)
|.++..+.|+++.+||||..||.+++..|+|+|++||.+|+.|+..++..+.|+
T Consensus 478 di~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~ 531 (543)
T KOG0361|consen 478 DINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPS 531 (543)
T ss_pred eecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999887766343
No 2
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.3e-107 Score=883.65 Aligned_cols=518 Identities=76% Similarity=1.157 Sum_probs=496.2
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcc
Q 008702 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (557)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~ 90 (557)
+++++.+...|.+++.+|+.||.++++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~ 83 (522)
T cd03340 4 LLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQD 83 (522)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhH
Confidence 56778788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 008702 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (557)
Q Consensus 91 ~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (557)
+++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++..++.++++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~ 163 (522)
T cd03340 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL 163 (522)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999999999988764322346789999999999999
Q ss_pred cCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeecccccc
Q 008702 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELK 250 (557)
Q Consensus 171 ~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 250 (557)
.+.++++|++++++|+..++++.|.++|+|+++.|++++||++++|++|+++|.+|+|.++|+.++||+|++++++||+.
T Consensus 164 ~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 243 (522)
T cd03340 164 IASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELK 243 (522)
T ss_pred chhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCC
Confidence 99999999999999999997644788999999999999999999999999999999988899999999999999999999
Q ss_pred ccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHhC
Q 008702 251 SEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATG 330 (557)
Q Consensus 251 ~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~tG 330 (557)
+++.+.++.++++++++++.+.|++++.++++++++.|++||+++++|+|.+++||.++||++++++++++|+|||++||
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~tG 323 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATG 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceec
Q 008702 331 GTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVA 410 (557)
Q Consensus 331 a~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvp 410 (557)
|++++++++++++++|+|+.|++.++|+++|++|+||+.++.|||+|||+++.+++|.+|+++||++++++++++|++||
T Consensus 324 a~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvp 403 (522)
T cd03340 324 GSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVA 403 (522)
T ss_pred CEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcc
Q 008702 411 GGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGI 490 (557)
Q Consensus 411 GGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~ 490 (557)
|||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|.. ++..++|+|+.+|++
T Consensus 404 GGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~~~~Gid~~~g~i 481 (522)
T cd03340 404 GGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQ--GGGKWYGVDINNEGI 481 (522)
T ss_pred CcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCCCeeeeeCCCCcc
Confidence 999999999999999988888999999999999999999999999999999999999999876 421479999999999
Q ss_pred cccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCC
Q 008702 491 ADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (557)
Q Consensus 491 ~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~ 530 (557)
.||++.|||||+.||+++|+.|+|+|++||+||++|+.++
T Consensus 482 ~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 482 ADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred cchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 9999999999999999999999999999999999998753
No 3
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.3e-106 Score=875.82 Aligned_cols=518 Identities=68% Similarity=1.067 Sum_probs=496.2
Q ss_pred hhHhhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHH
Q 008702 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86 (557)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a 86 (557)
||..+++++.+...|.+++..|+.||.+++++|++||||+|++|||+++.| ++|||||+|||++|+++||+++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 2 PTIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred CccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 455677888889999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhh
Q 008702 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTL 166 (557)
Q Consensus 87 ~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl 166 (557)
++|++++||||||+|||+++||+++.+++++|+||+.|++||+.|.+.+++.|+++++|++..+ ..+++.|.++|+|++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~va~tsl 159 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVK-GEQREVLEKCAATAL 159 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999986421 112578999999999
Q ss_pred ccCccCchhHHHHHHHHHHHHhhCCCC-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeec
Q 008702 167 SSKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (557)
Q Consensus 167 ~sk~~~~~~~~ls~lv~~Ai~~v~~~~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~ 245 (557)
+||+++.++++|++++++|+..++++. |.++|+|+++.|++++||++++|++|+++|.+|+|.+||++++||+|+++++
T Consensus 160 ~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 160 NSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred ccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 999999999999999999999998644 7889999999999999999999999999999999988999999999999999
Q ss_pred cccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHH
Q 008702 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (557)
Q Consensus 246 ~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~I 325 (557)
+|++.+++.+..+.++++++++++.+.|++++.++++++.+.|+++|+++++|++.+++||.++||+++++++.+++++|
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 008702 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (557)
Q Consensus 326 a~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~ 405 (557)
+++|||++++++++++++++|+|+.|++..+++++|++|+||+++++|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKA 399 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEec
Q 008702 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (557)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~ 485 (557)
+++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+
T Consensus 400 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~--~~-~~~G~d~ 476 (522)
T TIGR02345 400 RKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAK--GG-KWYGVDI 476 (522)
T ss_pred CCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CC-CccceeC
Confidence 88999999999999999999888888999999999999999999999999999999999999998876 44 7899999
Q ss_pred CCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCC
Q 008702 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (557)
Q Consensus 486 ~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~ 529 (557)
.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|+.+
T Consensus 477 ~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 477 NTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 99999999999999999999999999999999999999999774
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.9e-106 Score=871.05 Aligned_cols=513 Identities=29% Similarity=0.474 Sum_probs=489.3
Q ss_pred hhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhc
Q 008702 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (557)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~ 89 (557)
.+++++.+...|.+++..|+.||.+|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 3 KLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 34677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhccccc-CCChHHHHHHHHHHHHHhhcc
Q 008702 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE-GQSLEEKKRLLSKCAATTLSS 168 (557)
Q Consensus 90 ~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~-~~~~~~~~~~l~~ia~tsl~s 168 (557)
++++||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++++. ..+ ++.|.++++|+++|
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~s 158 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVD----RELLLNVARTSLRT 158 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999997763 333 67899999999999
Q ss_pred CccCchhHHHHHHHHHHHHhhCCCC---CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeec
Q 008702 169 KLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (557)
Q Consensus 169 k~~~~~~~~ls~lv~~Ai~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~ 245 (557)
|+++.++++|++++++|+..++++. |.++|+++++.|++.+||++++|++|++++.+|+| |++++||+|+++++
T Consensus 159 K~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~---~~~~~n~~Ill~~~ 235 (531)
T TIGR02347 159 KLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM---PRRVKNAYILTCNV 235 (531)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCC---ceeccCceEEEEeC
Confidence 9999999999999999999997642 56678999999999999999999999999999875 88999999999999
Q ss_pred cccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Ce---EEEecCcccHHHHHHHHhCCccccc
Q 008702 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSG-------AK---VVLSRLAIGDLATQYFADRDIFCAG 315 (557)
Q Consensus 246 ~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~-------~~---lii~~~~i~~~al~~l~~~~I~~v~ 315 (557)
+|++.+++.+..+.+++.+++..+...|+++++.++++|++.+ ++ ||+|+++|++.+++||.++||++++
T Consensus 236 ~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~ 315 (531)
T TIGR02347 236 SLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALR 315 (531)
T ss_pred CCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEc
Confidence 9999999999999999999999999999999999999999876 25 9999999999999999999999999
Q ss_pred CCChHHHHHHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHH
Q 008702 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDA 395 (557)
Q Consensus 316 ~v~~~~le~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~da 395 (557)
++++++|+|||++|||++++++++++++++|+|+.|++..+++++|++|++|.+++.|||+|||+|+.+++|++|+++||
T Consensus 316 rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DA 395 (531)
T TIGR02347 316 RAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDG 395 (531)
T ss_pred cCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCC
Q 008702 396 IMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPT 475 (557)
Q Consensus 396 l~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~ 475 (557)
++++++++++|++|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.+
T Consensus 396 l~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~-- 473 (531)
T TIGR02347 396 LRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDE-- 473 (531)
T ss_pred HHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--
Confidence 999999999999999999999999999999988889999999999999999999999999999999999999998876
Q ss_pred CCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCC
Q 008702 476 GEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSE 532 (557)
Q Consensus 476 ~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~ 532 (557)
++ .++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|+..|..
T Consensus 474 ~~-~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 474 GG-EVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred cC-CceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 55 779999999999999999999999999999999999999999999999987653
No 5
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.5e-105 Score=871.94 Aligned_cols=521 Identities=37% Similarity=0.584 Sum_probs=495.5
Q ss_pred ccchhHhhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCC-----CCCeEEecCHHHHhhhccccChH
Q 008702 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD-----KGTVTISNDGATIMKLLDIVHPA 78 (557)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~-----~g~~~iTnDG~tIl~~l~~~hP~ 78 (557)
|...|..+++++.+...|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ 82 (533)
T PTZ00212 3 MANVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA 82 (533)
T ss_pred ccccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH
Confidence 5556677889998899999999999999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHH
Q 008702 79 AKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLL 158 (557)
Q Consensus 79 a~ll~~~a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l 158 (557)
++|++++|++|++++||||||+|||+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++..+ ..+++.|
T Consensus 83 akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l 161 (533)
T PTZ00212 83 AKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDE-EKFKEDL 161 (533)
T ss_pred HHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccc-hhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999886532 1235789
Q ss_pred HHHHHHhhccCccCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCc
Q 008702 159 SKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNP 238 (557)
Q Consensus 159 ~~ia~tsl~sk~~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~ 238 (557)
.++|+|+++||+.+.+.+.|++++++|+..+....+.++|++++++|++++||++++|+++++++.++ ||++++||
T Consensus 162 ~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~----~~~~i~n~ 237 (533)
T PTZ00212 162 LNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVG----QPKRLENC 237 (533)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCCC----CCccccCC
Confidence 99999999999999999999999999999986544788999999999999999999999999998652 58999999
Q ss_pred eEEEeecccccccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCC
Q 008702 239 KILLLNIELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (557)
Q Consensus 239 kIll~~~~Le~~~~~~-~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v 317 (557)
||++++++||+++++. ++++.+++++++..+.+.|+++++++++.|++.++++++++++|++.+++||.++||++++++
T Consensus 238 kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v 317 (533)
T PTZ00212 238 KILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHA 317 (533)
T ss_pred cEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecC
Confidence 9999999999999987 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHH
Q 008702 318 AEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIM 397 (557)
Q Consensus 318 ~~~~le~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~ 397 (557)
++++++|||++|||+++++++++++.++|+|+.|++..+++++|++|++|..++.|||+|||+|+.+++|.||+++|||+
T Consensus 318 ~~~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~ 397 (533)
T PTZ00212 318 DFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALC 397 (533)
T ss_pred CHHHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCC
Q 008702 398 IVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE 477 (557)
Q Consensus 398 ~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~ 477 (557)
++++++++|++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+ ++
T Consensus 398 vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~--~~ 475 (533)
T PTZ00212 398 VLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYK--GN 475 (533)
T ss_pred HHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cC
Confidence 9999999999999999999999999999988889999999999999999999999999999999999999999876 55
Q ss_pred CCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCC
Q 008702 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSE 532 (557)
Q Consensus 478 ~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~ 532 (557)
.++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|..
T Consensus 476 -~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~ 529 (533)
T PTZ00212 476 -KTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQ 529 (533)
T ss_pred -CccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCcc
Confidence 789999999999999999999999999999999999999999999999987544
No 6
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=9e-106 Score=873.40 Aligned_cols=508 Identities=42% Similarity=0.678 Sum_probs=488.4
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcc
Q 008702 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (557)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~ 90 (557)
+++++.+...|.+++..|+.||.++++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd 83 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 83 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 46777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 008702 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (557)
Q Consensus 91 ~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (557)
+++||||||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++..+ ++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~----~~~L~~ia~tsl~sk~ 159 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPED----RDLLKKVAETSLTGKA 159 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCccc----HHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987644 6789999999999999
Q ss_pred c-CchhHHHHHHHHHHHHhhCC---C---C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEE
Q 008702 171 I-GGEKEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (557)
Q Consensus 171 ~-~~~~~~ls~lv~~Ai~~v~~---~---~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll 242 (557)
. +.+.++|++++++|+.++++ + . |.++|+|+++.|++++||++++|++|++++.+++ ||++++||||++
T Consensus 160 ~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~---m~~~i~n~kIll 236 (519)
T TIGR02339 160 SAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPG---MPKRVKNAKIAL 236 (519)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCC---CccccCCCcEEE
Confidence 8 78999999999999999974 1 1 6778999999999999999999999999999875 589999999999
Q ss_pred eeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHH
Q 008702 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (557)
Q Consensus 243 ~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~l 322 (557)
++++||+++++.++++.+++++++.++.++|+++++.++++|++.|++||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008702 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (557)
Q Consensus 323 e~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~ 402 (557)
+|||++|||++++++++++++++|+|+.|++.++|+++|++|+||.++..|||+|||+|+.+++|.+|+++||+++++++
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeE
Q 008702 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYG 482 (557)
Q Consensus 403 ~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~G 482 (557)
+++|++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~--~~-~~~G 473 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEK--GN-KNAG 473 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--cC-Ccee
Confidence 99999999999999999999999988888999999999999999999999999999999999999988875 45 7899
Q ss_pred EecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 008702 483 VDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (557)
Q Consensus 483 id~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 528 (557)
+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|+.
T Consensus 474 id~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 474 INVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred EEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 9999999999999999999999999999999999999999999863
No 7
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.8e-105 Score=865.13 Aligned_cols=512 Identities=36% Similarity=0.573 Sum_probs=487.5
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCC--CCCeEEecCHHHHhhhccccChHHHHHHHHHHhc
Q 008702 12 LKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (557)
Q Consensus 12 ~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~--~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~ 89 (557)
++++.+...|.+++..|+.||.+++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 45666788899999999999999999999999999999999998 5999999999999999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccC
Q 008702 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (557)
Q Consensus 90 ~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk 169 (557)
++++||||||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++..+ .++++.|.++|+|+++||
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~l~~ia~t~lssk 160 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDE-EAFREDLLNIARTTLSSK 160 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccccc-chhHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999875321 123678999999999999
Q ss_pred ccCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccc
Q 008702 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (557)
Q Consensus 170 ~~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~ 249 (557)
+.+.++++|++++++|+..++...|.++|++++++|++++||++++|+++++++.++ ||++++||+|++++++|++
T Consensus 161 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~----~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 161 ILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDT 236 (517)
T ss_pred ccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCC----CCCeeccccEEEEecCCCc
Confidence 999999999999999999997543788999999999999999999999999987643 5899999999999999999
Q ss_pred ccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHH
Q 008702 250 KSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (557)
Q Consensus 250 ~~~~~-~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~ 328 (557)
++++. ++++.+++++++..+.+.|++++++++++|++.++++++++++|++.+++||.++||++++++++++|+|||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~ 316 (517)
T cd03336 237 DKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALV 316 (517)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99987 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCce
Q 008702 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (557)
Q Consensus 329 tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~v 408 (557)
|||+++++++++++.++|+|+.|++..+|+++|++|++|++++.|||+|||+|+.+++|.+|+++||++++++++++|++
T Consensus 317 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 396 (517)
T cd03336 317 TGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRV 396 (517)
T ss_pred hCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCC
Q 008702 409 VAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTG 488 (557)
Q Consensus 409 vpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g 488 (557)
|||||++|++++.+|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+|
T Consensus 397 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~g 473 (517)
T cd03336 397 VLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYN--GN-TTAGLDMRKG 473 (517)
T ss_pred EeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC-CceeeecCCC
Confidence 99999999999999999988889999999999999999999999999999999999999999876 55 7899999999
Q ss_pred cccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 008702 489 GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKS 531 (557)
Q Consensus 489 ~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~ 531 (557)
++.||++.|||||+.||+++|+.|+|+|++||+||++|+..|+
T Consensus 474 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 516 (517)
T cd03336 474 TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPR 516 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCCC
Confidence 9999999999999999999999999999999999999998763
No 8
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-105 Score=871.34 Aligned_cols=510 Identities=32% Similarity=0.590 Sum_probs=488.3
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcc
Q 008702 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (557)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~ 90 (557)
+++++.+...|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 008702 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (557)
Q Consensus 91 ~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (557)
+++||||||+|+|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++..+ ++.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sk~ 159 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND----DAAMLKLIQSCIGTKF 159 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987654 5789999999999999
Q ss_pred cCchhHHHHHHHHHHHHhhCCCC-------CCC-CceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEE
Q 008702 171 IGGEKEFFASMVVDAVGAIGDGD-------RLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (557)
Q Consensus 171 ~~~~~~~ls~lv~~Ai~~v~~~~-------d~~-~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll 242 (557)
.+.|.++|++++++|+..++++. |.+ +|+|++++||+++||++++|++|++++.++. ||++++||+|++
T Consensus 160 ~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~---m~~~~~n~kIll 236 (525)
T TIGR02344 160 VSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPK---MRRYIENPRIVL 236 (525)
T ss_pred chhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCC---CccccCCCCEEE
Confidence 99999999999999999997531 222 5899999999999999999999999988764 689999999999
Q ss_pred eeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHH
Q 008702 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (557)
Q Consensus 243 ~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~l 322 (557)
++++|++.+++.+.++.++++++++++.+.|+++++.++++|.+.+++||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~L 316 (525)
T TIGR02344 237 LDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDN 316 (525)
T ss_pred EecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCCCCccc-cceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008702 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (557)
Q Consensus 323 e~Ia~~tGa~ii~s~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (557)
+|||++|||++++++++++++++|+ |+.|++.++++++|++|+||.+++.|||+|||+|+.+++|+||+++||++++++
T Consensus 317 erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 317 NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCC-CCCC
Q 008702 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTG-EGAP 480 (557)
Q Consensus 402 ~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~-~~~~ 480 (557)
+++++++|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+ + + .+
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~-~~ 473 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQ--EGN-CT 473 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cCC-Ce
Confidence 999999999999999999999999988889999999999999999999999999999999999999999876 4 4 68
Q ss_pred eEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCC
Q 008702 481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (557)
Q Consensus 481 ~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~ 530 (557)
+|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|...|
T Consensus 474 ~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 474 WGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred EeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999999999999998876
No 9
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.7e-105 Score=869.53 Aligned_cols=508 Identities=41% Similarity=0.672 Sum_probs=489.0
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcc
Q 008702 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (557)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~ 90 (557)
+++++.+..+|.+++..|+.||.++++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|++++|++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 008702 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (557)
Q Consensus 91 ~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (557)
+++||||||+++|+++|++++.+++++|+||..|++||+.|.+.+++.|++++++++..+ ++.|.++|+|+++||+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~----~~~l~~va~ts~~sk~ 158 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD----KDTLRKIAKTSLTGKG 158 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999986544 6789999999999999
Q ss_pred cCchhHHHHHHHHHHHHhhCCC-----C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEee
Q 008702 171 IGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (557)
Q Consensus 171 ~~~~~~~ls~lv~~Ai~~v~~~-----~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (557)
.+.+.++|++++++|+.+++++ . |.++|+|++++|++++||++++|++|+++|.+|+| |+.++||||++++
T Consensus 159 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m---~~~~~n~~Illl~ 235 (517)
T cd03343 159 AEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM---PKRVENAKIALLD 235 (517)
T ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCC---ccccCCCcEEEEe
Confidence 9999999999999999998753 2 56779999999999999999999999999999876 7899999999999
Q ss_pred ccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHH
Q 008702 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (557)
Q Consensus 245 ~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~ 324 (557)
++||+++++.++++.+++.+++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008702 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (557)
Q Consensus 325 Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~ 404 (557)
||++|||++++++++++++++|+|+.|++.++|+++|++|+||.+++.|||+|||+|+.+++|++|+++||+++++++++
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEe
Q 008702 405 NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (557)
Q Consensus 405 ~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid 484 (557)
+|++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|.. ++ .++|+|
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~G~d 472 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEK--GN-KNAGLD 472 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cC-Cceeee
Confidence 999999999999999999999988889999999999999999999999999999999999999988865 44 789999
Q ss_pred cCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 008702 485 INTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (557)
Q Consensus 485 ~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 528 (557)
+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|+.
T Consensus 473 ~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 473 VYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred cCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 99999999999999999999999999999999999999999965
No 10
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-104 Score=864.82 Aligned_cols=504 Identities=39% Similarity=0.629 Sum_probs=479.7
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCch
Q 008702 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (557)
Q Consensus 18 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDGt 97 (557)
...|.+++..|+.||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008702 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (557)
Q Consensus 98 tt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (557)
||+|||+++||+++.+++++|+||+.|++||+.|.+.+++.|++ ++++++..+ ++.|.++|+|+++||+++.+.+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG----KESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccC----HHHHHHHHHHHhcccccchhHH
Confidence 99999999999999999999999999999999999999999996 899886444 6789999999999999988889
Q ss_pred HHHHHHHHHHHhhCC--C----C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccc
Q 008702 177 FFASMVVDAVGAIGD--G----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (557)
Q Consensus 177 ~ls~lv~~Ai~~v~~--~----~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~ 249 (557)
+|++++++|+..++. . . |.++|+|+++.|+++++|++++|++|++++.++. ||++++||+|++++++|++
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~---m~~~i~n~kIlll~~~Le~ 235 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQG---MPTRVKNAKIACLDFNLQK 235 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCC---CcccccCCcEEEEeccCCC
Confidence 999999999999852 1 1 6788999999999999999999999999999875 5899999999999999999
Q ss_pred cccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHh
Q 008702 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (557)
Q Consensus 250 ~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~t 329 (557)
.+++.+.++.++++.+++.+.+.|++++++++++|.+.|++|||++++|++.+++||.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 236 TKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred CccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccccCC------CCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHh
Q 008702 330 GGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (557)
Q Consensus 330 Ga~ii~s~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~ 403 (557)
||+++++++++ ++.++|+|+.|++.++++++|++|+||.+++.|||+|||+|+.+++|++|+++||++++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~ 395 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTL 395 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998665 344799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCC------
Q 008702 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE------ 477 (557)
Q Consensus 404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~------ 477 (557)
++|++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|.+ +.
T Consensus 396 ~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~--~~~~~~~~ 473 (527)
T cd03335 396 ESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAA--AQVKPDKK 473 (527)
T ss_pred hCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--cCCccccc
Confidence 9999999999999999999999988889999999999999999999999999999999999999998876 31
Q ss_pred -CCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCC
Q 008702 478 -GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (557)
Q Consensus 478 -~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~ 530 (557)
++++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|...|
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 26799999999999999999999999999999999999999999999998765
No 11
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-104 Score=865.66 Aligned_cols=511 Identities=31% Similarity=0.536 Sum_probs=485.5
Q ss_pred hhcccc--cccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHH
Q 008702 10 ILLKEG--TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAK 87 (557)
Q Consensus 10 ~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~ 87 (557)
.+++++ .+..+|.+++..|+.||.+++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~ 87 (526)
T cd03339 8 IIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSK 87 (526)
T ss_pred EEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHH
Confidence 456776 368899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhc
Q 008702 88 SQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLS 167 (557)
Q Consensus 88 ~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~ 167 (557)
+|++++||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++.+. .+.+.|.++++|+++
T Consensus 88 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~tsl~ 165 (526)
T cd03339 88 SQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP--DNKEPLIQTAMTSLG 165 (526)
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCc--ccHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999886421 136789999999999
Q ss_pred cCccCchhHHHHHHHHHHHHhhCCC---C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEe
Q 008702 168 SKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (557)
Q Consensus 168 sk~~~~~~~~ls~lv~~Ai~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~ 243 (557)
+|+.+.+.++|++++++|+..+... . |.+.|+|++++||+++||++++|++|++++.+++| |+.++||||+++
T Consensus 166 sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m---~~~~~n~kI~ll 242 (526)
T cd03339 166 SKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM---PKEVKDAKIAIL 242 (526)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCC---CceecCCCEEEE
Confidence 9998888999999999999988642 2 67899999999999999999999999999999876 789999999999
Q ss_pred eccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHH
Q 008702 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (557)
Q Consensus 244 ~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le 323 (557)
+++||+++++.+.++.++++++++++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++++|+
T Consensus 243 ~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~Le 322 (526)
T cd03339 243 TCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIE 322 (526)
T ss_pred EecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHH
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCCCCccccceEEEEEECC--eeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008702 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (557)
Q Consensus 324 ~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (557)
|||++|||+++++++++++.++|+|+.|++..+|. ++|++|+||++++.|||+|||+|+.+++|+||+++|||+++++
T Consensus 323 rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~ 402 (526)
T cd03339 323 LIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRN 402 (526)
T ss_pred HHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 6899999999999999999999999999999999999999999
Q ss_pred HhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCe
Q 008702 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481 (557)
Q Consensus 402 ~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~ 481 (557)
++++|++|||||++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++ ++ .++
T Consensus 403 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~-~~-~~~ 480 (526)
T cd03339 403 LIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE-KN-PHL 480 (526)
T ss_pred HhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CC-CeE
Confidence 9999999999999999999999999888889999999999999999999999999999999999999998651 24 689
Q ss_pred EEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 008702 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (557)
Q Consensus 482 Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~ 527 (557)
|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.
T Consensus 481 Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 481 GIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred eeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 9999999999999999999999999999999999999999999873
No 12
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3e-104 Score=860.66 Aligned_cols=514 Identities=32% Similarity=0.545 Sum_probs=487.4
Q ss_pred hHhhccc--ccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHH
Q 008702 8 QIILLKE--GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDI 85 (557)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~ 85 (557)
|..++++ +.+...|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~ 89 (532)
T TIGR02343 10 PFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVEL 89 (532)
T ss_pred CchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHH
Confidence 3345677 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHh
Q 008702 86 AKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATT 165 (557)
Q Consensus 86 a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~ts 165 (557)
|++|++++||||||++||+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++.+. .+++.|.++++|+
T Consensus 90 a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~t~ 167 (532)
T TIGR02343 90 SKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDN--NNKEPLIQAAKTS 167 (532)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCC--CCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999875321 1367899999999
Q ss_pred hccCccCchhHHHHHHHHHHHHhhCCC---C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEE
Q 008702 166 LSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (557)
Q Consensus 166 l~sk~~~~~~~~ls~lv~~Ai~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIl 241 (557)
+++|+.+.+.++|++++++|+..+... + |.++|+|+++.||+++||++++|++|++++.+++| |+.++||||+
T Consensus 168 l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m---~~~~~n~kI~ 244 (532)
T TIGR02343 168 LGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQM---PKEVKDAKIA 244 (532)
T ss_pred hccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCC---CeeecCCcEE
Confidence 999988888999999999999988542 2 78999999999999999999999999999999875 8899999999
Q ss_pred EeeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHH
Q 008702 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (557)
Q Consensus 242 l~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~ 321 (557)
+++++||+++++.+.++.+++++++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++++
T Consensus 245 l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~ 324 (532)
T TIGR02343 245 ILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHE 324 (532)
T ss_pred EEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeecccccCCCCCCccccceEEEEEECC--eeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 008702 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (557)
Q Consensus 322 le~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~ 399 (557)
|+|||++|||+++++++++++.++|+|+.|++..+|. ++|++|++|++++.+||+|||+|+.+++|.||+++||++++
T Consensus 325 l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v 404 (532)
T TIGR02343 325 LELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVV 404 (532)
T ss_pred HHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 48999999999999999999999999999999999999999
Q ss_pred HHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCC
Q 008702 400 RRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA 479 (557)
Q Consensus 400 ~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~ 479 (557)
+++++++++|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|++.|... ++ .
T Consensus 405 ~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~-~~-~ 482 (532)
T TIGR02343 405 RNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKE-KN-P 482 (532)
T ss_pred HHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CC-C
Confidence 999999999999999999999999999888899999999999999999999999999999999999999988651 24 6
Q ss_pred CeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 008702 480 PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (557)
Q Consensus 480 ~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 528 (557)
++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++||+||++|..
T Consensus 483 ~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 483 HLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred ccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 8999999999999999999999999999999999999999999999964
No 13
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-103 Score=849.77 Aligned_cols=513 Identities=35% Similarity=0.559 Sum_probs=486.7
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCC--CCeEEecCHHHHhhhccccChHHHHHHHHHHh
Q 008702 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDK--GTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (557)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~--g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~ 88 (557)
+++++.+..++.+++..|+.||.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhcc
Q 008702 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSS 168 (557)
Q Consensus 89 ~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~s 168 (557)
|++++||||||+|||+++||+++.+++++|+||+.|++||+.|.+.+++.|++++++++... ..+++.|.++++|++++
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~L~~ia~t~l~s 160 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDK-TKFRDDLLNIARTTLSS 160 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcc-cccHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999886421 11257899999999999
Q ss_pred CccCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeecccc
Q 008702 169 KLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (557)
Q Consensus 169 k~~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le 248 (557)
|+.+.+.+.|++++++|+..+....+.+.|++.++.|+++++|++++|+++++.+.+ .+|++++||+|++++++|+
T Consensus 161 ki~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~----~~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 161 KILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV----NQPKRIENAKILIANTPMD 236 (519)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCC----CCceeeccccEEEEecCCC
Confidence 999989999999999999998543366779999999999999999999999999764 2588999999999999999
Q ss_pred cccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHH
Q 008702 249 LKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (557)
Q Consensus 249 ~~~~~~-~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~ 327 (557)
+.+++. ++++.+++++++..+...|++++.++++.|++.|++++++++.|++.+++||.+++|++++++++.+|+|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~ 316 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLAL 316 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999887 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 008702 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNST 407 (557)
Q Consensus 328 ~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~ 407 (557)
+|||+++++++++++.++|+|+.|++..+|+++|++|++|++++.|||+|||+|+.+++|.+|+++||++++++++++++
T Consensus 317 ~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~ 396 (519)
T TIGR02341 317 VTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESR 396 (519)
T ss_pred HhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCC
Q 008702 408 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINT 487 (557)
Q Consensus 408 vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~ 487 (557)
+|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+
T Consensus 397 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~ 473 (519)
T TIGR02341 397 TVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYN--GN-HTMGLDMEE 473 (519)
T ss_pred EEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CC-CccceecCC
Confidence 999999999999999999888889999999999999999999999999999999999999999876 55 789999999
Q ss_pred CcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 008702 488 GGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKS 531 (557)
Q Consensus 488 g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~ 531 (557)
|++.||++.|||||+.||+++|+.|+|+|++||+||++|+..|+
T Consensus 474 g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 474 GEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred CcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999874
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.5e-103 Score=850.36 Aligned_cols=502 Identities=34% Similarity=0.567 Sum_probs=480.6
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCch
Q 008702 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (557)
Q Consensus 18 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDGt 97 (557)
...+.+++.+|+.||..+++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhHH
Q 008702 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (557)
Q Consensus 98 tt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (557)
||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++..+ ++.|.++++|++++|+.+.+.++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~~~ 159 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD----REILIKSATTSLSSKVVSQYSSL 159 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccC----HHHHHHHHHHHhccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999986544 67899999999999999999999
Q ss_pred HHHHHHHHHHhhCCC----C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeecccccccc
Q 008702 178 FASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (557)
Q Consensus 178 ls~lv~~Ai~~v~~~----~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~ 252 (557)
|++++++|+..+++. . |.++|+|+++.|++.+||++++|++|++++.++. +||+.++||+|++++++|++.++
T Consensus 160 ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~--~mpk~i~n~kI~ll~~~Le~~~~ 237 (517)
T TIGR02342 160 LAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA--GGPTRIEKAKIGLIQFQISPPKT 237 (517)
T ss_pred HHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC--CCCccccCCcEEEEecCCCCCcc
Confidence 999999999999752 2 6889999999999999999999999999998742 36899999999999999999999
Q ss_pred ccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcc-----cHHHHHHHHhCCcccccCCChHHHHHHHH
Q 008702 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (557)
Q Consensus 253 ~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i-----~~~al~~l~~~~I~~v~~v~~~~le~Ia~ 327 (557)
+....+.++++++++.+.+.|+++++++++++++.|++||+++++| ++.+++||.++||++++++++++|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~ 317 (517)
T TIGR02342 238 DMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICK 317 (517)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCC-ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008702 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (557)
Q Consensus 328 ~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~-~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g 406 (557)
+|||+++++++++++.++|+|+.|++.++++++|++|++++++ +.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 318 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~ 397 (517)
T TIGR02342 318 TIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKR 397 (517)
T ss_pred HHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999874 899999999999999999999999999999999998
Q ss_pred ceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecC
Q 008702 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN 486 (557)
Q Consensus 407 ~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~ 486 (557)
++|||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.
T Consensus 398 ~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~ 474 (517)
T TIGR02342 398 GLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHAN--GE-KYAGISVR 474 (517)
T ss_pred CEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CC-CccceecC
Confidence 9999999999999999999988888999999999999999999999999999999999999999976 55 78999999
Q ss_pred CCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 008702 487 TGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (557)
Q Consensus 487 ~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 528 (557)
+|+++||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 475 ~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 475 KGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred CCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 999999999999999999999999999999999999999875
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.7e-103 Score=850.32 Aligned_cols=503 Identities=35% Similarity=0.567 Sum_probs=481.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDG 96 (557)
++..+.+++..|+.||..++++|++||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008702 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (557)
Q Consensus 97 ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (557)
|||+++|+++|++++.+++++|+||..|++||+.|.+.+++.|++++++++..+ ++.|.++|+|+++||+.+.+++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~----~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND----RESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHHhccccchhhHH
Confidence 999999999999999999999999999999999999999999999999987544 5789999999999999999999
Q ss_pred HHHHHHHHHHHhhCCC----C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccccc
Q 008702 177 FFASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (557)
Q Consensus 177 ~ls~lv~~Ai~~v~~~----~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~ 251 (557)
+|++++++|+.+++++ . |.++|+++++.|++++||++++|++|++++.++++ +|+.++||+|++++|+|++.+
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~--~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG--GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCC--CCccccCCcEEEEeccccccc
Confidence 9999999999999863 2 67889999999999999999999999999999764 388999999999999999999
Q ss_pred cccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcc-----cHHHHHHHHhCCcccccCCChHHHHHHH
Q 008702 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (557)
Q Consensus 252 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i-----~~~al~~l~~~~I~~v~~v~~~~le~Ia 326 (557)
++....+.++++++++.+.++|+++++++++++++.|++|||++++| ++.+++||.++||++++++++++|+|||
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa 315 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFIC 315 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHH
Confidence 99989999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred HHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 008702 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (557)
Q Consensus 327 ~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~ 405 (557)
++|||+++++++++++.++|+|+.|++.++|+++|++|++|++ ++.|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 316 ~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 316 KTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred HHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred CceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEec
Q 008702 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (557)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~ 485 (557)
|++|||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~G~d~ 472 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQ--GE-KNAGINV 472 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cC-Cccceec
Confidence 99999999999999999999988888999999999999999999999999999999999999999876 55 7899999
Q ss_pred CCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 008702 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (557)
Q Consensus 486 ~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 528 (557)
.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|++
T Consensus 473 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 473 RKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 9999999999999999999999999999999999999999864
No 16
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.5e-102 Score=849.71 Aligned_cols=509 Identities=38% Similarity=0.611 Sum_probs=481.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDG 96 (557)
+...|.+++..|+.||..|++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhh-cccccCCChHHHHHHHHHHHHHhhccCccCchh
Q 008702 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKEL-AKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (557)
Q Consensus 97 ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (557)
|||++||+++||+++.+++++|+||+.|++||+.|++.+++.|++. +++++..+ .+.|.++|+|+++||+.+.++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELG----REALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999999999999999999999999999974 88886443 578999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC---C---C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeecccc
Q 008702 176 EFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (557)
Q Consensus 176 ~~ls~lv~~Ai~~v~~---~---~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le 248 (557)
++|++++++|+..++. + . |.++|+++++.|++++||++++|++|+++|.++. ||++++||+|++++++|+
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~---m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQ---MPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCC---CcceecCCcEEEEecCCC
Confidence 9999999999999852 1 1 6788999999999999999999999999999875 589999999999999999
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHH
Q 008702 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (557)
Q Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~ 328 (557)
+.+++.+.++.++++.+++.+.+.|++++.+.+++|++.+++||+++++|++.+++||.+++|++++++++++|+|||++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~ 318 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKA 318 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCC------CCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008702 329 TGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (557)
Q Consensus 329 tGa~ii~s~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~ 402 (557)
|||+++++++++ ++.++|+|+.|++.++++++|++|+++.++++|||+|||+|+.+++|++|+++||+++++++
T Consensus 319 tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~ 398 (536)
T TIGR02340 319 TGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRT 398 (536)
T ss_pred hCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997654 44569999999999999999999999988899999999999999999999999999999999
Q ss_pred hhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCC------C
Q 008702 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPT------G 476 (557)
Q Consensus 403 ~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~------~ 476 (557)
+++|++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|...+ +
T Consensus 399 ~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~ 478 (536)
T TIGR02340 399 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKH 478 (536)
T ss_pred hcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCccccccc
Confidence 9999999999999999999999988888899999999999999999999999999999999999999887510 1
Q ss_pred CCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCc
Q 008702 477 EGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSES 533 (557)
Q Consensus 477 ~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~ 533 (557)
+ .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|...|.+.
T Consensus 479 ~-~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~~ 534 (536)
T TIGR02340 479 L-KWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQS 534 (536)
T ss_pred C-ceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 2 5799999999999999999999999999999999999999999999999877543
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-102 Score=843.64 Aligned_cols=514 Identities=27% Similarity=0.506 Sum_probs=483.0
Q ss_pred hhcccccccccch-HHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHh
Q 008702 10 ILLKEGTDTSQGK-AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (557)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~ 88 (557)
.+++++.+...|. +++..|+.||..|+++|++||||+|++|||++++|+++|||||+||+++|+++||+++|++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~s 83 (531)
T TIGR02346 4 SLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEM 83 (531)
T ss_pred ccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHH
Confidence 3456665566675 499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcc-cccCCChHHHHHHHHHHHHHhhc
Q 008702 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAK-SIEGQSLEEKKRLLSKCAATTLS 167 (557)
Q Consensus 89 ~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~-~v~~~~~~~~~~~l~~ia~tsl~ 167 (557)
|++++||||||+|||+++||+++.+++++|+||..|++||+.|++.+++.|+++++ +++..+ +.+.|.++++|+++
T Consensus 84 qd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~tsl~ 160 (531)
T TIGR02346 84 QENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVR---NKKELIKALKASIS 160 (531)
T ss_pred HhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCC---CHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999986 664322 25789999999999
Q ss_pred cCccCchhHHHHHHHHHHHHhhCCC---C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEe
Q 008702 168 SKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (557)
Q Consensus 168 sk~~~~~~~~ls~lv~~Ai~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~ 243 (557)
||+.+. +++|++++++|+.+++++ . |.+.|+|+++.|++.+||++++|++|++++. .+|+.++||||+++
T Consensus 161 sK~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~-----~~~k~i~n~kI~l~ 234 (531)
T TIGR02346 161 SKQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE-----GSVKRVKNAKVAVF 234 (531)
T ss_pred cccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC-----CCceeccCCCEEEE
Confidence 999887 999999999999999753 2 6788999999999999999999999999853 24789999999999
Q ss_pred eccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHH
Q 008702 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (557)
Q Consensus 244 ~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le 323 (557)
++++++.+++.+.++.++++.++.++...|+++++++++++++.|++||+++++|+|.+++||.++||+++++++..+|+
T Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~ 314 (531)
T TIGR02346 235 SCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELR 314 (531)
T ss_pred ecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCC-CCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008702 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (557)
Q Consensus 324 ~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~-~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~ 402 (557)
|||.+|||++++++++++++++|+|+.|++.++|+++|.+|+++. .++.+||+|||+|+.+++|++|+++||+++++++
T Consensus 315 ~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~a 394 (531)
T TIGR02346 315 RLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKAL 394 (531)
T ss_pred HHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 5889999999999999999999999999999999
Q ss_pred hhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeE
Q 008702 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYG 482 (557)
Q Consensus 403 ~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~G 482 (557)
+++|++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|
T Consensus 395 i~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~G 471 (531)
T TIGR02346 395 VKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKK--GN-TSSG 471 (531)
T ss_pred hcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cC-Cccc
Confidence 99999999999999999999999988888999999999999999999999999999999999999998865 55 6899
Q ss_pred EecCCCc--ccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCccc
Q 008702 483 VDINTGG--IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQ 535 (557)
Q Consensus 483 id~~~g~--~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~~~ 535 (557)
+|+.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|...|...++
T Consensus 472 id~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~ 526 (531)
T TIGR02346 472 IDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPK 526 (531)
T ss_pred eeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCC
Confidence 9999999 5999999999999999999999999999999999999987655443
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-101 Score=830.28 Aligned_cols=479 Identities=29% Similarity=0.487 Sum_probs=455.3
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccc
Q 008702 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~ 92 (557)
+++.+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 2 NPKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|+++|++++.+++++|+||..|++||++|.+.+++.|++++++++.+. +.+.|.++|+++++||+.+
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~---~~~~l~~va~ts~~sk~~~ 158 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDT---DRELLLSVARTSLRTKLHA 158 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---CHHHHHHHHHHHhCcccch
Confidence 9999999999999999999999999999999999999999999999999999886411 2678999999999999999
Q ss_pred chhHHHHHHHHHHHHhhCCCC---CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~ 249 (557)
.+.++|++++++|+..++++. |.+.|+|++++||+++||++++|++|++++.+|+| |++++||+|++++++|++
T Consensus 159 ~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m---~~~~~n~~Ill~~~~le~ 235 (484)
T cd03342 159 DLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM---PKRVENAYILTCNVSLEY 235 (484)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCC---CccccCceEEEEeCCCCC
Confidence 999999999999999998642 78889999999999999999999999999999876 899999999999999999
Q ss_pred cccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHh
Q 008702 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (557)
Q Consensus 250 ~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~t 329 (557)
.+++.+.++.++ |||++++|++.+++||.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~t 286 (484)
T cd03342 236 EKTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLAC 286 (484)
T ss_pred CccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHh
Confidence 988776555432 999999999999999999999999999999999999999
Q ss_pred CCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCcee
Q 008702 330 GGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVV 409 (557)
Q Consensus 330 Ga~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vv 409 (557)
||+++++++++++.++|+|+.|++..+++++|++|++|.+++.|||+|||+|+.+++|.||+++||++++++++++|++|
T Consensus 287 Ga~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 287 GGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCc
Q 008702 410 AGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGG 489 (557)
Q Consensus 410 pGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~ 489 (557)
||||++|++|+.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+ ++ .++|+|+.+|+
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~g~ 443 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAE--GG-QVGGVDLDTGE 443 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cC-CceeeeCCCCc
Confidence 9999999999999999988889999999999999999999999999999999999999988876 55 78999999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCC
Q 008702 490 IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (557)
Q Consensus 490 ~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~ 529 (557)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|+..
T Consensus 444 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 444 PMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred ccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9999999999999999999999999999999999999764
No 19
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-101 Score=742.37 Aligned_cols=520 Identities=37% Similarity=0.581 Sum_probs=499.9
Q ss_pred hhHhhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCC--CCCeEEecCHHHHhhhccccChHHHHHHH
Q 008702 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVD 84 (557)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~--~g~~~iTnDG~tIl~~l~~~hP~a~ll~~ 84 (557)
.|.++++.+..+++|+.++.+.|.++..+.++|||||||+||+|+++.. .|.+.+||||+|||+++.+.+|+||+|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 5778899999999999999999999999999999999999999999964 46799999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 008702 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (557)
Q Consensus 85 ~a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~t 164 (557)
.++-||+++||||||++||+++||+++.+|+.+.+||+.|+.||+.|.+.+++.|.+.++... .+...++++|.++++|
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns-~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNS-SDKEKFREDLLKIART 160 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887633 3556789999999999
Q ss_pred hhccCccCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEee
Q 008702 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (557)
Q Consensus 165 sl~sk~~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (557)
.|+||+++++.++|++|+++|+.++....+++.|.|++..||.++||++-+|+++++.+.. ++|++++|++||+-|
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv----~qpkriena~iLIAN 236 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV----NQPKRIENAKILIAN 236 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC----CCcccccccceEEec
Confidence 9999999999999999999999999876689999999999999999999999999998864 458999999999999
Q ss_pred cccccccccc-CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHH
Q 008702 245 IELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (557)
Q Consensus 245 ~~Le~~~~~~-~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le 323 (557)
.+++..+.+. .+.+.+++...+.++...|++.++.++++|.++|+|+.++..-|.++..++|.+.||+++.+.+.+-+|
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiE 316 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIE 316 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHH
Confidence 9999988887 788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHh
Q 008702 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (557)
Q Consensus 324 ~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~ 403 (557)
|++.+||+.|++.|++++..++|+|+.+++..+|++++++|+|+..+..|||+|||+|.+++||.+|++|||||++...+
T Consensus 317 RLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv 396 (527)
T KOG0363|consen 317 RLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 396 (527)
T ss_pred HHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEE
Q 008702 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (557)
Q Consensus 404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gi 483 (557)
++.+++.||||.||.++..+.+++...++++..++.+|++||..+|.+|+.|+|||+.+++++||+.|.. |. .++|+
T Consensus 397 ~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~--g~-~t~Gl 473 (527)
T KOG0363|consen 397 KESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYN--GR-TTMGL 473 (527)
T ss_pred ccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhc--CC-ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 87 89999
Q ss_pred ecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCcc
Q 008702 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESA 534 (557)
Q Consensus 484 d~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~~ 534 (557)
|+++|++.||.+.||+|++.+|.+.+.+|.|+|.+|||+|.||.+.|+++.
T Consensus 474 d~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~ 524 (527)
T KOG0363|consen 474 DVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERE 524 (527)
T ss_pred ccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcccc
Confidence 999999999999999999999999999999999999999999999998765
No 20
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-100 Score=742.84 Aligned_cols=502 Identities=35% Similarity=0.573 Sum_probs=481.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDG 96 (557)
+.....+.|.+||+|++++++.++|||||+||+|||++..|+++|||||+|||+.|++-||+++||++++..||.++|||
T Consensus 20 d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG 99 (534)
T KOG0358|consen 20 DKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG 99 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008702 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (557)
Q Consensus 97 ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (557)
|||+|+|+++||..+.+|+++|+||+.|.+.|+.|.++.+++|++++.|++..| ++.|.+-+.|+|+||+.++++.
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd----re~Li~~atTsLnSKvvSq~s~ 175 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD----RESLIKSATTSLNSKVVSQYSS 175 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc----HHHHHHHHHhHhhHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999877 8899999999999999999999
Q ss_pred HHHHHHHHHHHhhCC-C---C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccccc
Q 008702 177 FFASMVVDAVGAIGD-G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (557)
Q Consensus 177 ~ls~lv~~Ai~~v~~-~---~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~ 251 (557)
.|+.++++|+.++-. . + |+.+|+|++..||.++|+++++|++|++..... ..|++++++||-++.|.|++++
T Consensus 176 llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~---~gptriekAkIglIQF~iS~PK 252 (534)
T KOG0358|consen 176 LLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKS---AGPTRIEKAKIGLIQFQISPPK 252 (534)
T ss_pred ccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccC---CCcchhhhceeeEEEEEecCCC
Confidence 999999999999864 2 3 899999999999999999999999999876543 2489999999999999999999
Q ss_pred cccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcc-----cHHHHHHHHhCCcccccCCChHHHHHHH
Q 008702 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (557)
Q Consensus 252 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i-----~~~al~~l~~~~I~~v~~v~~~~le~Ia 326 (557)
+++..++.++++.|++++++.|++|+.+++++|++.|+||++.|++| +|++++||++.+||++.++.++|+|.++
T Consensus 253 tdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefic 332 (534)
T KOG0358|consen 253 TDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFIC 332 (534)
T ss_pred CCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHH
Confidence 99999999999999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred HHhCCeecccccCCCCCCccccceEEEEEE-CCeeEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008702 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQV-GNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (557)
Q Consensus 327 ~~tGa~ii~s~~~l~~~~lG~~~~v~~~~i-g~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~ 404 (557)
+.+|+.++.+++.+++..+|+++.+++..- |+.+++.+.|+.+ +..+||++||++...++|.+|++|||||++|++++
T Consensus 333 k~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk 412 (534)
T KOG0358|consen 333 KTLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVK 412 (534)
T ss_pred hhcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhh
Confidence 999999999999999999999999998744 5559999999887 68999999999999999999999999999999999
Q ss_pred CCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEe
Q 008702 405 NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (557)
Q Consensus 405 ~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid 484 (557)
...++||||+.|++++..|.+++....+.+.|++++||+|||.||.||++|||++|+.++.+||+.|.+ |+ .+.||+
T Consensus 413 ~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haq--ge-~~aGIn 489 (534)
T KOG0358|consen 413 KRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQ--GE-KNAGIN 489 (534)
T ss_pred ccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhc--CC-ccccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 88 999999
Q ss_pred cCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 008702 485 INTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (557)
Q Consensus 485 ~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 528 (557)
++.|.+.||+++.|+.|+.|-.+++..|+|++.+||+||+++..
T Consensus 490 VRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 490 VRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred eecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999864
No 21
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.4e-99 Score=812.13 Aligned_cols=466 Identities=34% Similarity=0.631 Sum_probs=443.8
Q ss_pred hcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcc
Q 008702 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (557)
Q Consensus 11 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~ 90 (557)
+++++.+...|.+++..|+.||.++++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|++++|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 008702 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (557)
Q Consensus 91 ~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (557)
+++||||||++||+++||+++.+++++|+||+.|++||+.|.+.+++.|++++++++..+ ++.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sK~ 159 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND----RAQMLKIIKSCIGTKF 159 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCC----HHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999999999999987544 6789999999999999
Q ss_pred cCchhHHHHHHHHHHHHhhCCCC-----CCC---CceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEE
Q 008702 171 IGGEKEFFASMVVDAVGAIGDGD-----RLN---MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (557)
Q Consensus 171 ~~~~~~~ls~lv~~Ai~~v~~~~-----d~~---~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll 242 (557)
.+.|.+.|++++++|+..++++. +.+ +|+|++++|++++||++++|++|++++.++. ||++++||+|++
T Consensus 160 ~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~---m~~~~~n~kIll 236 (480)
T cd03337 160 VSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPK---MRRRIENPRIVL 236 (480)
T ss_pred chhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCC---CCcEecCCCEEE
Confidence 99999999999999999997531 123 5899999999999999999999999999865 589999999999
Q ss_pred eeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHH
Q 008702 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (557)
Q Consensus 243 ~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~l 322 (557)
++++||+ ||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L 275 (480)
T cd03337 237 LDCPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDN 275 (480)
T ss_pred EecCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHH
Confidence 9999865 99999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCCCCccc-cceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 008702 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (557)
Q Consensus 323 e~Ia~~tGa~ii~s~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~ 401 (557)
+|||++|||++++++++++++++|+ |+.+++.++++++|++|++|++++.|||+|||+|+.+++|+||+++||++++++
T Consensus 276 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 276 NRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred HHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 678888889999999999999999999999999999999999999999999999
Q ss_pred HhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCC-CCCC
Q 008702 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTG-EGAP 480 (557)
Q Consensus 402 ~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~-~~~~ 480 (557)
+++++++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.+ + + .+
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~-~~ 432 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQ--GEN-ST 432 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cCC-Ce
Confidence 999999999999999999999999988889999999999999999999999999999999999999999976 5 4 68
Q ss_pred eEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 008702 481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (557)
Q Consensus 481 ~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~ 527 (557)
+|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 433 ~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 433 WGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred ECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999999999999999999999999999999999985
No 22
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-97 Score=791.96 Aligned_cols=505 Identities=37% Similarity=0.580 Sum_probs=479.2
Q ss_pred ccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccC
Q 008702 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (557)
Q Consensus 15 ~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~G 94 (557)
+.+..+|.+++..|+.|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++||.++|++++|++||+++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCch
Q 008702 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (557)
Q Consensus 95 DGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 174 (557)
|||||++||+++||+++.+++.+|+||+.|++||++|.+.++++|++++.+++..+ .+. +++.|+++||...++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~----~~~--~~~~t~v~sk~~~~~ 156 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE----EEL--KIAITSVASKSANSD 156 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch----hhh--hhhhheeeeeeccCh
Confidence 99999999999999999999999999999999999999999999999999988654 222 899999999987766
Q ss_pred hHHHHHHHHHHHHhhCCCC-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCC-ccccCceEEEeecccccccc
Q 008702 175 KEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP-KKFLNPKILLLNIELELKSE 252 (557)
Q Consensus 175 ~~~ls~lv~~Ai~~v~~~~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~-~~~~n~kIll~~~~Le~~~~ 252 (557)
++|++++++|+.+++..+ |.+.|.+++..|+..+|+++++|++|++++.+||| || +.++||+|+++|++|++.++
T Consensus 157 -~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~--~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 157 -EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF--MPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred -HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC--CCccccccceEEEEccccccccc
Confidence 999999999999999765 67899999999999999999999999999988886 68 89999999999999999999
Q ss_pred ccCceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCe-EEEecCcccHHHHHHHHhCCcccccCCChHHH-HHHHHHh
Q 008702 253 KENAEIRLSDPSQYQSIVDAEW-NIIYDKLDKCVQSGAK-VVLSRLAIGDLATQYFADRDIFCAGRVAEEDL-LRVAAAT 329 (557)
Q Consensus 253 ~~~~~~~i~~~~~~~~~~~~E~-~~i~~~v~~i~~~~~~-lii~~~~i~~~al~~l~~~~I~~v~~v~~~~l-e~Ia~~t 329 (557)
+.+.++.+++..++..+.+.|+ +.+..++.++.+.+++ +++++++|+|.+++||.+.+|++++++.++++ ++|++++
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 9999999999999999999998 9999999999999999 99999999999999999999999999999999 8999999
Q ss_pred CCeecccccCCCCCCccc--cceEEEEEECCeeEEEEEcCCC--CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 008702 330 GGTVQTSVNNVVDEVLGT--CEHFEERQVGNERFNIFSGCPS--GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (557)
Q Consensus 330 Ga~ii~s~~~l~~~~lG~--~~~v~~~~ig~~~~~~~~g~~~--~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~ 405 (557)
||.+++.+++++...+|. |..+++.+++++++.+|+++.. ++.|||+|||+|+.+++|.||+++|||+++++++++
T Consensus 314 ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~ 393 (524)
T COG0459 314 GAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393 (524)
T ss_pred CceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999999999986 789999999999999999999999999999999999
Q ss_pred CceecCCchhHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEe
Q 008702 406 STVVAGGGAIDMEISKYLRQESRAIAG-KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (557)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid 484 (557)
|++|||||++|++++..|++++...++ ++|+++++|++||+.||++|++|||+||.+++.+|++.|.. +++|+|
T Consensus 394 g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~-----~~~G~d 468 (524)
T COG0459 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHAT-----TNYGID 468 (524)
T ss_pred CCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccC-----Ccccee
Confidence 999999999999999999997444444 99999999999999999999999999999999999998742 569999
Q ss_pred cCCCcc-cccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCc
Q 008702 485 INTGGI-ADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSES 533 (557)
Q Consensus 485 ~~~g~~-~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~ 533 (557)
+.+|++ .||.+.|||||+.||+++|++|+++|.+||++|++|...|.+.
T Consensus 469 ~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 469 AFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred ccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 999999 7799999999999999999999999999999999999988764
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.3e-96 Score=787.52 Aligned_cols=459 Identities=45% Similarity=0.716 Sum_probs=441.3
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCch
Q 008702 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (557)
Q Consensus 18 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDGt 97 (557)
..++.+++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhHH
Q 008702 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (557)
Q Consensus 98 tt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (557)
||+++|+++|++++.+++++|+||..|++||+.|.+.+++.|++++++++..+ ++.|.++++|+++||+.+.|+++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~~ 158 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED----REELLKVATTSLNSKLVSGGDDF 158 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCC----HHHHHHHhHhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999865444 68999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC---CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeecccccccccc
Q 008702 178 FASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKE 254 (557)
Q Consensus 178 ls~lv~~Ai~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~ 254 (557)
+++++++|+.++++++ +.++|+|++++||++.||++++|++|++++.+|+| |++++||+|++++++|++
T Consensus 159 l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m---~~~~~n~~Ili~~~~Le~----- 230 (464)
T cd00309 159 LGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM---PKRLENAKILLLDCKLEY----- 230 (464)
T ss_pred HHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCC---ceeecCceEEEEecCcce-----
Confidence 9999999999998742 57899999999999999999999999999999886 799999999999999975
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHhCCeec
Q 008702 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (557)
Q Consensus 255 ~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ii 334 (557)
||+++++|++.++++|.++||++++++++++|+|||++|||+++
T Consensus 231 ------------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii 274 (464)
T cd00309 231 ------------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIV 274 (464)
T ss_pred ------------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCch
Q 008702 335 TSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414 (557)
Q Consensus 335 ~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~ 414 (557)
++++++++.++|+|+.|++.++++++|++|.+++.++.|||+|||+|+.+++|+||+++||+++++++++++++|||||+
T Consensus 275 ~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 275 SRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred cccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccc
Q 008702 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSF 494 (557)
Q Consensus 415 ~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~ 494 (557)
+|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|++.|.. +. .++|+|..+|++.||.
T Consensus 355 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~--~~-~~~g~d~~~~~~~d~~ 431 (464)
T cd00309 355 AEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAE--GG-GNAGGDVETGEIVDMK 431 (464)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc--cC-CCeeEECCCCcEeehh
Confidence 99999999999988889999999999999999999999999999999999999998876 44 6899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 008702 495 ANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (557)
Q Consensus 495 ~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~ 527 (557)
+.|||||+.||+++|+.|+|+|++||+||++|+
T Consensus 432 ~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 432 EAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred hccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999999999999999999984
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.5e-96 Score=785.08 Aligned_cols=459 Identities=31% Similarity=0.546 Sum_probs=434.4
Q ss_pred cchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCchhH
Q 008702 20 QGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTT 99 (557)
Q Consensus 20 ~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDGttt 99 (557)
.+.+++..|+.||.+|++++++||||+|++|||++.+|+++|||||+||+++|+++||+++|+++++++|++++||||||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhccc-ccCCChHHHHHHHHHHHHHhhccCccCchhHHH
Q 008702 100 VVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKS-IEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFF 178 (557)
Q Consensus 100 ~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~-v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 178 (557)
++||+++||+++.+++++|+||+.|++||+.|++.+++.|++++++ ++..+ +.+.+.++++|+++||..+ ++++|
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~t~l~sk~~~-~~~~l 160 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR---NKEEVSKALKTAIASKQYG-NEDFL 160 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc---CHHHHHHHHHHHhcccccc-hHHHH
Confidence 9999999999999999999999999999999999999999999876 43321 2678999999999999976 79999
Q ss_pred HHHHHHHHHhhCCC---C-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeecccccccccc
Q 008702 179 ASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKE 254 (557)
Q Consensus 179 s~lv~~Ai~~v~~~---~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~ 254 (557)
++++++|+.+++++ . +.++|+|++++|++++||++++|++|++.+. +++++++||+|++++++|++
T Consensus 161 ~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~-----~~~~~~~n~~Ili~~~~Le~----- 230 (472)
T cd03341 161 SPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE-----GSVKRVKKAKVAVFSCPFDI----- 230 (472)
T ss_pred HHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC-----CCceeccCCcEEEEeccccC-----
Confidence 99999999999864 2 6789999999999999999999999987653 23588999999999999865
Q ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHhCCeec
Q 008702 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (557)
Q Consensus 255 ~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ii 334 (557)
|++||+++++|++.+++||+++||++++++++++|+|||++|||+++
T Consensus 231 ---------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii 277 (472)
T cd03341 231 ---------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPL 277 (472)
T ss_pred ---------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCccccceEEEEEECCeeEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCc
Q 008702 335 TSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGG 413 (557)
Q Consensus 335 ~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG 413 (557)
+++++++++++|+|+.|++.++|+++|++|++|.. ++.|||+|||+|+.+++|+||+++||++++++++++|++|||||
T Consensus 278 ~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG 357 (472)
T cd03341 278 PRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAG 357 (472)
T ss_pred cccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcC
Confidence 99999999999999999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCC--ccc
Q 008702 414 AIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTG--GIA 491 (557)
Q Consensus 414 ~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g--~~~ 491 (557)
++|++++.+|++++...++++++++++|++||+.||++|++|||+||.+++.+|+..|.. ++ .++|+|+.+| ++.
T Consensus 358 ~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~Gid~~~g~~~~~ 434 (472)
T cd03341 358 ATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQK--GN-KSAGVDIESGDEGTK 434 (472)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cC-CeeeeeccCCCCCcc
Confidence 999999999999888888899999999999999999999999999999999999998866 55 7899999999 999
Q ss_pred ccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 008702 492 DSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (557)
Q Consensus 492 d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~ 528 (557)
||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 435 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 435 DAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred ChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999999999999864
No 25
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.3e-93 Score=770.60 Aligned_cols=476 Identities=25% Similarity=0.399 Sum_probs=436.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~a~~~~~~ 92 (557)
+..+|.+++..|+.||..++++|+|||||+|++|||+++.|+++|||||+|||++|+++|| +++|++++|++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4567899999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ + .+.|.++|.|++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--D----KEEIAQVATISA------ 151 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999999999999999999999886 2 468999999885
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCC----CCCccccCceEEEeecccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~Le 248 (557)
++++.+++++++|+..++++ +.|.|.+..| ...++++++|++|+++|.+|+|. ++++.++||+|+++|+.|
T Consensus 152 ~~~~~ls~lv~~Av~~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i- 226 (542)
T PRK00013 152 NGDEEIGKLIAEAMEKVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI- 226 (542)
T ss_pred cchHHHHHHHHHHHHHhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc-
Confidence 37899999999999999754 4577776666 67789999999999999999983 578999999999999965
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCC------cccccCCC----
Q 008702 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGRVA---- 318 (557)
Q Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~------I~~v~~v~---- 318 (557)
+++++ +.++++++.+.+++|||++++|++.++++|.+++ |+++++++
T Consensus 227 ------------~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~ 283 (542)
T PRK00013 227 ------------SNIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDR 283 (542)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccc
Confidence 45555 4577999999999999999999999999999886 88888775
Q ss_pred -hHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCCCCc---------------------
Q 008702 319 -EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (557)
Q Consensus 319 -~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (557)
+++|+|||.+|||++++ +++++++++||+|+.|++. .+++++|+++.+++
T Consensus 284 r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 360 (542)
T PRK00013 284 RKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYD 360 (542)
T ss_pred hhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHH
Confidence 89999999999999999 7999999999999999975 48999999987765
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHH
Q 008702 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (557)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (557)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|+++ ...++++|++
T Consensus 361 ~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~ 438 (542)
T PRK00013 361 REKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATG 438 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHH
Confidence 78999999999999999999999999999999998 9999999999999999988 6788999999
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 008702 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (557)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (557)
+++|++||+.||++|++|||+|+.+++.+|+..| . +++|+|+.+|++.||++.|||||+.||.++|+.|+++|+
T Consensus 439 i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~-~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~ 512 (542)
T PRK00013 439 INIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK-G-----KGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAG 512 (542)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C-----CCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877 3 789999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCCCCcccccccccCCCCCC
Q 008702 518 LILSVDETVKNPKSESAQGEAAASAMGGRG 547 (557)
Q Consensus 518 ~lL~id~iI~~~~~~~~~~~~~~~~~~~~~ 547 (557)
+||+||++|...|.+.+ .+|||||++
T Consensus 513 ~iL~id~iI~~~~~~~~----~~~~~~~~~ 538 (542)
T PRK00013 513 LLLTTEAVVADKPEKKA----AAPPMGGGG 538 (542)
T ss_pred HHHHHHHHHhcCCcccC----CCCCCCCCC
Confidence 99999999998875432 245555553
No 26
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.1e-92 Score=762.95 Aligned_cols=463 Identities=23% Similarity=0.363 Sum_probs=427.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~a~~~~~~ 92 (557)
...+|.+++..|+.++.+++++|+|||||+|++|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 3567899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.|.++|+|++
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--G----SEEIAQVATISA------ 151 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999886 2 467999999984
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCccc-ceEEEeEEEeccccCCCCC----CCCccccCceEEEeeccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~d-s~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~L 247 (557)
++++++++++++|+..++.+ +.+.+. .|+..+| +++++|++|+++|.+|+|. ++++.++||+|+++|+.|
T Consensus 152 ~~~~~l~~lv~~Av~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 226 (542)
T PRK12849 152 NGDEEIGELIAEAMEKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI 226 (542)
T ss_pred CChHHHHHHHHHHHHHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc
Confidence 47899999999999999754 334443 6888876 7999999999999999883 578999999999999965
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhC------CcccccCCC---
Q 008702 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (557)
Q Consensus 248 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~------~I~~v~~v~--- 318 (557)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++++
T Consensus 227 -------------~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~ 282 (542)
T PRK12849 227 -------------SSLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGD 282 (542)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccc
Confidence 45555 456789999999999999999999999999987 899988776
Q ss_pred --hHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCCCC---------------------
Q 008702 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (557)
Q Consensus 319 --~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (557)
+++|+|||.+|||++++ +++++++++||+|+.|++. .+++++|+|+.++
T Consensus 283 ~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~ 359 (542)
T PRK12849 283 RRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTIT---KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDY 359 (542)
T ss_pred hhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEe---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHH
Confidence 56699999999999999 6899998999999999974 4899999988765
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHH
Q 008702 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (557)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~ 436 (557)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|.+++ ..++++|+
T Consensus 360 ~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~ 437 (542)
T PRK12849 360 DREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAA 437 (542)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHH
Confidence 489999999999999999999999999999999998 99999999999999999998 88899999
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 008702 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (557)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (557)
++++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|+++||++.|||||+.+|.++|+.|+++|
T Consensus 438 ~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-------~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A 510 (542)
T PRK12849 438 GVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-------DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVA 510 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-------CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764 56999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCCCC
Q 008702 517 CLILSVDETVKNPKSE 532 (557)
Q Consensus 517 ~~lL~id~iI~~~~~~ 532 (557)
++||+||++|..+|.+
T Consensus 511 ~~iL~id~iI~~~~~~ 526 (542)
T PRK12849 511 GLLLTTEALVADKPEE 526 (542)
T ss_pred HHHHhHHHHHhcCCcc
Confidence 9999999999987754
No 27
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=4.5e-92 Score=765.32 Aligned_cols=483 Identities=42% Similarity=0.690 Sum_probs=460.2
Q ss_pred HHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCchhHHHHHHHHHHHHHHHH
Q 008702 35 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPF 114 (557)
Q Consensus 35 l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDGttt~vvLa~~Ll~~~~~l 114 (557)
|+++|++||||+|++|||++..|+++|||||+||+++++++||+++|+++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhHHHHHHHHHHHHhhCCCCC
Q 008702 115 IEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR 194 (557)
Q Consensus 115 i~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ls~lv~~Ai~~v~~~~d 194 (557)
+++|+||..|++||+.|.+.+++.|++++++++.++ +.|.++++|++++|+.+.|.++|++++++|+..+....|
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-----~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~ 155 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-----ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFD 155 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-----HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-----hhhhhhhcccccccccccchhhhhhhHHHHHHhhccccc
Confidence 999999999999999999999999999999987642 699999999999999999999999999999944432225
Q ss_pred CCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccccccccCceEEecCHHHHHHHHHHHH
Q 008702 195 LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEW 274 (557)
Q Consensus 195 ~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~ 274 (557)
.+.++++++.|++.+||++++|++|++++.++. ||+++++|+|++++++|++.++ .+.++.+++.++++.+.++|+
T Consensus 156 ~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~---~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~ 231 (485)
T PF00118_consen 156 LDNIKIIKIPGGSISDSELINGIVLDKGFSSPN---MPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEK 231 (485)
T ss_dssp GGGEEEEEEESSSSGGEEEESEEEESSSBSSTT---SBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHH
T ss_pred ccchhhhhhccccccccccccceeeeccccccc---cccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhh
Confidence 667999999999999999999999999999874 5889999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHhCCeecccccCCCCCCccccceEEEE
Q 008702 275 NIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354 (557)
Q Consensus 275 ~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~ 354 (557)
++++++++++.+.+++||+++++|++.++++|.++||+++.++++++|++|+++|||+++++++++++..+|+|+.+++.
T Consensus 232 ~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~ 311 (485)
T PF00118_consen 232 KYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEER 311 (485)
T ss_dssp HHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEE
T ss_pred hhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred EECCeeEEEEE--cCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcc
Q 008702 355 QVGNERFNIFS--GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432 (557)
Q Consensus 355 ~ig~~~~~~~~--g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 432 (557)
.+++++|++|+ ++..++.+||+|||+++.+++|++++++||+++++++++++++|||||++|++|+.+|++++...++
T Consensus 312 ~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 391 (485)
T PF00118_consen 312 EIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSG 391 (485)
T ss_dssp EETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSS
T ss_pred ccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccC
Confidence 99999999999 5788999999999999999999999999999999999999999999999999999999999998999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHH
Q 008702 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAA 512 (557)
Q Consensus 433 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A 512 (557)
++++++++|++||+.||++|++|||+|+.+++.+|+..|.. + .++|+|+.+|++.||.+.|||||+.+|+++|+.|
T Consensus 392 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~--~--~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A 467 (485)
T PF00118_consen 392 KEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNN--G--NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSA 467 (485)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHS--T--TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcc--c--cccCcCccCCceeccccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998854 2 6899999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcCCC
Q 008702 513 TEAACLILSVDETVKNPK 530 (557)
Q Consensus 513 ~e~a~~lL~id~iI~~~~ 530 (557)
+|+|++||+||++|.++|
T Consensus 468 ~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 468 VEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999998875
No 28
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.4e-91 Score=754.88 Aligned_cols=477 Identities=23% Similarity=0.375 Sum_probs=429.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChH----HHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~a~~~~~~ 92 (557)
+..++.+++..|+.||.+++++++|||||+|++|||+++.|+++|||||+|||++|+++||+ ++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 45678899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ + .+.|.++++++++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~~s~~----- 153 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--S----SKEIAQVATISAN----- 153 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC-----
Confidence 9999999999999999999999999999999999999999999999999999886 2 4679999998854
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCC----CCCccccCceEEEeecccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~Le 248 (557)
.++.+++++++|+..++++ +.|.+.... ..-.++++++|++|+++|.+|+|. ++++.++||+|+++|+.+
T Consensus 154 -~~~~l~~lv~eAv~~vg~~---g~i~v~~~~-~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i- 227 (544)
T PRK12850 154 -GDESIGEMIAEAMDKVGKE---GVITVEEAK-TLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI- 227 (544)
T ss_pred -CHHHHHHHHHHHHHHhccc---CceeeEEcc-ccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc-
Confidence 4789999999999999754 233333221 112578999999999999999983 568999999999999965
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCc------ccccC-----C
Q 008702 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGR-----V 317 (557)
Q Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I------~~v~~-----v 317 (557)
++.++ +.++++++.+.+++|||++++|++.++++|.+++| +++++ +
T Consensus 228 ------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~ 284 (544)
T PRK12850 228 ------------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDR 284 (544)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcc
Confidence 23222 78889999999999999999999999999999998 77665 9
Q ss_pred ChHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCCCCc---------------------
Q 008702 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (557)
Q Consensus 318 ~~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (557)
++++|+|||.+|||++++ +++++++++||+|+.|++.. +++++|+|+.+++
T Consensus 285 ~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (544)
T PRK12850 285 RKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYD 361 (544)
T ss_pred cHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999999 68999989999999999764 8899999887643
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHH
Q 008702 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (557)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (557)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...++++|++
T Consensus 362 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~ 439 (544)
T PRK12850 362 REKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAG 439 (544)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHH
Confidence 89999999999999999999999999999999997 9999999999999999988 6778899999
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 008702 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (557)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (557)
+++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|++.||++.|||||+.||.++|+.|+++|+
T Consensus 440 i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-------~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~ 512 (544)
T PRK12850 440 IDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-------GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAA 512 (544)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-------CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 568999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCCCCccc-ccccccCCCC
Q 008702 518 LILSVDETVKNPKSESAQ-GEAAASAMGG 545 (557)
Q Consensus 518 ~lL~id~iI~~~~~~~~~-~~~~~~~~~~ 545 (557)
+||+||++|...|.+.+. +...||.|||
T Consensus 513 ~iL~id~iI~~~~~~~~~~~~~~~~~~~~ 541 (544)
T PRK12850 513 LLITTEAMVAEAPKKAAAAAAGPGPGMGG 541 (544)
T ss_pred HHHhHHHhhccCCCCCCCCCCCCCCCCCC
Confidence 999999999998765433 2122566665
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-90 Score=752.71 Aligned_cols=466 Identities=24% Similarity=0.365 Sum_probs=427.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~a~~~~~~ 92 (557)
+..++.+++..|+.++..++++|++||||+|++|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 4567889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|++++++++. .+.+.+++++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~------~~~l~~va~~s~------ 152 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTT------NAEIAQVATISA------ 152 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC------HHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999998862 467899998874
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCC----CCCccccCceEEEeecccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~Le 248 (557)
+++++|++++++|+..++.+ +.|.+.... +...++++++|++|+++|.+|+|. +||++++||+|+++|++++
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~ 228 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS 228 (541)
T ss_pred cChHHHHHHHHHHHHHhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC
Confidence 47899999999999999764 455665544 456789999999999999999873 4789999999999999852
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCc------cccc-----CC
Q 008702 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAG-----RV 317 (557)
Q Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I------~~v~-----~v 317 (557)
+.++ +.++++++.+.+++|||++++|++.++++|.+++| ++++ ++
T Consensus 229 -------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~ 284 (541)
T PRK12851 229 -------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDR 284 (541)
T ss_pred -------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccc
Confidence 2222 67889999999999999999999999999999987 5555 59
Q ss_pred ChHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCCCCc---------------------
Q 008702 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (557)
Q Consensus 318 ~~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (557)
++++|+|||.+|||++++ +++++++++||+|+.|++.+ ++|+++.++.+++
T Consensus 285 ~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (541)
T PRK12851 285 RKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYD 361 (541)
T ss_pred cHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999 68899988999999999865 8899999987653
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHH
Q 008702 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (557)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (557)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|++++.. +++++++
T Consensus 362 ~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~ 439 (541)
T PRK12851 362 REKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTG 439 (541)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHH
Confidence 88999999999999999999999999999999998 9999999999999999998876 8899999
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 008702 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (557)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (557)
+++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|+++||++.|||||+.||.++|+.|+++|+
T Consensus 440 ~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-------~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~ 512 (541)
T PRK12851 440 VEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-------GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAG 512 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-------CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 569999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCCCCcc
Q 008702 518 LILSVDETVKNPKSESA 534 (557)
Q Consensus 518 ~lL~id~iI~~~~~~~~ 534 (557)
+||+||++|...|.+.+
T Consensus 513 ~iL~id~iI~~~~~~~~ 529 (541)
T PRK12851 513 LLLTTEAMVAEKPKKEP 529 (541)
T ss_pred HHHhHHHhhhcCCCCCC
Confidence 99999999998876533
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.7e-90 Score=751.48 Aligned_cols=466 Identities=23% Similarity=0.375 Sum_probs=429.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~a~~~~~~ 92 (557)
+..+|.+++..|+.+|..|+++|+|||||+|++|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 5778899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|++++++++ + .+.|.++|+|+++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~----~~~l~~va~ts~~----- 164 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--T----KEDILNVATISAN----- 164 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHcC-----
Confidence 9999999999999999999999999999999999999999999999999999885 2 4679999999864
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccc-eEEEeEEEeccccCCCC----CCCCccccCceEEEeeccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds-~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~~L 247 (557)
+++++++++++|+..++++ + .|.+..|++++|| ++++|++|+++|.+|+| ..|++.++||+|+++|++|
T Consensus 165 -~~~~l~~li~eAv~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L 238 (555)
T PTZ00114 165 -GDVEIGSLIADAMDKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKI 238 (555)
T ss_pred -ChHHHHHHHHHHHHHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCC
Confidence 4789999999999999854 2 2666789999998 79999999999999998 4678999999999999998
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCC------cccccC-----
Q 008702 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGR----- 316 (557)
Q Consensus 248 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~------I~~v~~----- 316 (557)
+ ++++ +.++++++.+.+++|+|++++|++.++++|..++ |+++++
T Consensus 239 ~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~ 294 (555)
T PTZ00114 239 S-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGD 294 (555)
T ss_pred C-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCc
Confidence 5 3333 6788999999999999999999999999998875 888754
Q ss_pred CChHHHHHHHHHhCCeecccc------cCCCCCCccccceEEEEEECCeeEEEEEcCC----------------------
Q 008702 317 VAEEDLLRVAAATGGTVQTSV------NNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------------------- 368 (557)
Q Consensus 317 v~~~~le~Ia~~tGa~ii~s~------~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~---------------------- 368 (557)
+++++|+|||.+|||+++++. ++++++++|+|+.|++.+ +++++++++.
T Consensus 295 ~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~ 371 (555)
T PTZ00114 295 NRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSE 371 (555)
T ss_pred chHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCH
Confidence 788999999999999999997 788888999999999876 5677777665
Q ss_pred -------------CCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHh--hhcch
Q 008702 369 -------------SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR--AIAGK 433 (557)
Q Consensus 369 -------------~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~--~~~~~ 433 (557)
+++.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. ..+++
T Consensus 372 ~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~ 450 (555)
T PTZ00114 372 YDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPD 450 (555)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchH
Confidence 66899999999999999999999999999999999988 999999999999999999875 57889
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHH
Q 008702 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAAT 513 (557)
Q Consensus 434 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~ 513 (557)
+|+++++|++||+.||++|++|||+|+.+++.+|++ . ++ +++|+|+.+|++.||++.|||||+.||+++|+.|+
T Consensus 451 ~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~--~~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 524 (555)
T PTZ00114 451 QRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---K--KD-PSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAA 524 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---c--CC-CCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 2 44 78999999999999999999999999999999999
Q ss_pred HHHHHHhchhhhhcCCCCCc
Q 008702 514 EAACLILSVDETVKNPKSES 533 (557)
Q Consensus 514 e~a~~lL~id~iI~~~~~~~ 533 (557)
++|++||+||++|...|.+.
T Consensus 525 ~~A~~iL~id~iI~~~~~~~ 544 (555)
T PTZ00114 525 SVASLMLTTEAAIVDLPKEK 544 (555)
T ss_pred HHHHHHHhHHHHHHhCCccc
Confidence 99999999999999977653
No 31
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9e-90 Score=747.75 Aligned_cols=467 Identities=23% Similarity=0.347 Sum_probs=424.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccc----cChHHHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDI----VHPAAKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~----~hP~a~ll~~~a~~~~~~ 92 (557)
+..+|.+++..|+.|+..++++|++||||+||+|||+++.|+++|||||+|||++|++ +||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 4567889999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++. .+.+.++++++.+
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~------~~~l~~va~~s~~----- 153 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVAS------SAEIAQVGTISAN----- 153 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHhhhcC-----
Confidence 99999999999999999999999999999999999999999999999999998863 2468999988754
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCc-ccceEEEeEEEeccccCCCCC----CCCccccCceEEEeeccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~-~ds~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~L 247 (557)
.++.+++++++|+.+++++ ..|.+. .|+.. .++++++|++|+++|.+|+|. .|+..++||+|+++++.|
T Consensus 154 -~~~~l~~li~eA~~~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i 227 (545)
T PRK12852 154 -GDAAIGKMIAQAMQKVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL 227 (545)
T ss_pred -ChHHHHHHHHHHHHHhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc
Confidence 3789999999999999865 334433 36665 689999999999999999872 467889999999999865
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhC------CcccccCCC---
Q 008702 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (557)
Q Consensus 248 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~------~I~~v~~v~--- 318 (557)
++++ .+.++++.+.+.+++|||++++|++.++++|..+ +|+++++.+
T Consensus 228 -------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~ 283 (545)
T PRK12852 228 -------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (545)
T ss_pred -------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCccc
Confidence 3333 3678899999999999999999999999999864 788887544
Q ss_pred --hHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCCC----------------------
Q 008702 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS---------------------- 369 (557)
Q Consensus 319 --~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~---------------------- 369 (557)
+++|+|||.+|||++++ +++++++++||+|+.|++.+ ++++++.++..
T Consensus 284 ~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (545)
T PRK12852 284 RRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDY 360 (545)
T ss_pred chHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999 78999999999999999765 78899988765
Q ss_pred -------------CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHH
Q 008702 370 -------------GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (557)
Q Consensus 370 -------------~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~ 436 (557)
++.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|.+++.. ++++|+
T Consensus 361 ~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~ 438 (545)
T PRK12852 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQA 438 (545)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHH
Confidence 3789999999999999999999999999999999998 9999999999999999998866 788999
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 008702 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (557)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (557)
++++|++||+.||++|++|||+|+.+++++|++.| . +++|+|+.+|++.||++.|||||+.||+++|+.|+++|
T Consensus 439 ~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~-----~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a 512 (545)
T PRK12852 439 GINIVLKALEAPIRQIAENAGVEGSIVVGKILENK-S-----ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVA 512 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C-----CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876 2 67999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCCCCccc
Q 008702 517 CLILSVDETVKNPKSESAQ 535 (557)
Q Consensus 517 ~~lL~id~iI~~~~~~~~~ 535 (557)
++||+||++|...|.+..+
T Consensus 513 ~~iL~id~iI~~~~~~~~~ 531 (545)
T PRK12852 513 GLLVTTEAMVAELPKKDAA 531 (545)
T ss_pred HHHHhHHHHhhcCCCCCCC
Confidence 9999999999988766443
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.2e-89 Score=739.92 Aligned_cols=457 Identities=24% Similarity=0.395 Sum_probs=423.7
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHHhccccc
Q 008702 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEV 93 (557)
Q Consensus 18 ~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~a~~~~~~~ 93 (557)
..+|.+++..|+.+|..++++++|||||+|++|||+++.|+++|||||+||+++|+++|| +++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 457889999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCc
Q 008702 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (557)
Q Consensus 94 GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~ 173 (557)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ + .+.|.++|+|+++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~----~~~l~~va~ts~~------ 150 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--T----KEEIAQVATISAN------ 150 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC------
Confidence 999999999999999999999999999999999999999999999999999986 3 5789999999975
Q ss_pred hhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCccc-ceEEEeEEEeccccCCCCC----CCCccccCceEEEeecccc
Q 008702 174 EKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (557)
Q Consensus 174 ~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~d-s~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~Le 248 (557)
.++++++++++|+..++.+ +.|.+ ..|++..| +++++|++|+++|.+|+|. +++++++||+|+++|++|
T Consensus 151 ~~~~l~~lv~~A~~~v~~~---~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l- 224 (520)
T cd03344 151 GDEEIGELIAEAMEKVGKD---GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI- 224 (520)
T ss_pred ChHHHHHHHHHHHHHhccC---CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC-
Confidence 4799999999999999754 33433 58888888 7999999999999999984 355789999999999996
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCc------ccc-----cCC
Q 008702 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCA-----GRV 317 (557)
Q Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I------~~v-----~~v 317 (557)
+++++ +.++++++.+.+++|||++++|++.++++|.+++| +++ +++
T Consensus 225 ------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~ 281 (520)
T cd03344 225 ------------SSIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDR 281 (520)
T ss_pred ------------CCHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcc
Confidence 45555 56678999999999999999999999999999988 665 455
Q ss_pred ChHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCCCC----------------------
Q 008702 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG---------------------- 370 (557)
Q Consensus 318 ~~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~---------------------- 370 (557)
++++|+|||.+|||++++ ++++++++++|+|+.|++.+ +++++++++.++
T Consensus 282 ~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 358 (520)
T cd03344 282 RKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358 (520)
T ss_pred cHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999 78899988999999999765 789999988664
Q ss_pred -------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHH
Q 008702 371 -------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (557)
Q Consensus 371 -------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (557)
+.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. .++++|++
T Consensus 359 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~ 436 (520)
T cd03344 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLG 436 (520)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHH
Confidence 599999999999999999999999999999999998 999999999999999999987 89999999
Q ss_pred HHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 008702 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (557)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (557)
+++|++||+.||++|++|||+|+.+++++|+..| .++|+|+.+|++.||++.|||||+.||.++|+.|+++|+
T Consensus 437 ~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~-------~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~ 509 (520)
T cd03344 437 IEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-------DGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVAS 509 (520)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc-------CCEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765 469999999999999999999999999999999999999
Q ss_pred HHhchhhhhc
Q 008702 518 LILSVDETVK 527 (557)
Q Consensus 518 ~lL~id~iI~ 527 (557)
+||+||.+|.
T Consensus 510 ~iL~id~~i~ 519 (520)
T cd03344 510 LLLTTEALVV 519 (520)
T ss_pred HHHhhheEEe
Confidence 9999999885
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=7e-89 Score=737.51 Aligned_cols=461 Identities=23% Similarity=0.366 Sum_probs=422.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~a~~~~~~ 92 (557)
+..+|.+++..|+.|+.+++++|+|||||+|++|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 3567889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|++++++++ + .+.|.++++|+.
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~----~~~l~~va~ts~------ 150 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--G----KKEIAQVATISA------ 150 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------
Confidence 9999999999999999999999999999999999999999999999999999886 3 468999999884
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCc-ccceEEEeEEEeccccCCCCC----CCCccccCceEEEeeccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~-~ds~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~L 247 (557)
++++++++++++|+..++++ +.|.|. .|+.. .++++++|++|+++|.+|+|. ++++.++||+|+++|+.|
T Consensus 151 ~~~~~l~~lv~~A~~~v~~~---~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i 225 (524)
T TIGR02348 151 NNDEEIGSLIAEAMEKVGKD---GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI 225 (524)
T ss_pred cChHHHHHHHHHHHHHhCcC---CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc
Confidence 46899999999999999864 344444 36666 569999999999999999883 578899999999999975
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhC------CcccccCCC---
Q 008702 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (557)
Q Consensus 248 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~------~I~~v~~v~--- 318 (557)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++++
T Consensus 226 -------------~~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~ 281 (524)
T TIGR02348 226 -------------SNIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGD 281 (524)
T ss_pred -------------CCHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccc
Confidence 34444 578899999999999999999999999999875 788986664
Q ss_pred --hHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCCCCc--------------------
Q 008702 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR-------------------- 371 (557)
Q Consensus 319 --~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~-------------------- 371 (557)
+++|+|||.+|||++++ +++++++++||+|+.|++.. +++++++|+.+++
T Consensus 282 ~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~ 358 (524)
T TIGR02348 282 RRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDY 358 (524)
T ss_pred hhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 48999999999999999 89999999999999999754 7899999876654
Q ss_pred ---------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHH
Q 008702 372 ---------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (557)
Q Consensus 372 ---------------~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~ 436 (557)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++ +...++++++
T Consensus 359 ~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~ 436 (524)
T TIGR02348 359 DREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAI 436 (524)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHH
Confidence 78999999999999999999999999999999998 999999999999999998 7778889999
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 008702 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (557)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (557)
++++|++||+.||++|++|||+|+.+++.+|+.. . .++|+|+.+|++.||++.|||||+.||.++|+.|+++|
T Consensus 437 ~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a 509 (524)
T TIGR02348 437 GIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--K-----GNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIA 509 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--C-----CCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864 2 34899999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCC
Q 008702 517 CLILSVDETVKNPK 530 (557)
Q Consensus 517 ~~lL~id~iI~~~~ 530 (557)
++||+||++|...|
T Consensus 510 ~~iL~id~ii~~~~ 523 (524)
T TIGR02348 510 GLLLTTEAVVADKP 523 (524)
T ss_pred HHHHhHHHHhhcCC
Confidence 99999999998654
No 34
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=7.2e-88 Score=730.38 Aligned_cols=463 Identities=20% Similarity=0.315 Sum_probs=416.1
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHH----HHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAA----KILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a----~ll~~~a~~~~~~ 92 (557)
+..++.+++...+++|..++++|++||||+||+|||+++.|+++|||||+|||++|+++||++ +|+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 356788999999999999999999999999999999999999999999999999999999998 5888899999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|++ + ++.|.++|+++++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d----~~~L~~VA~ts~~----- 152 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--D----IQAITQVASISAG----- 152 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHhcc-----
Confidence 9999999999999999999999999999999999999999999999999999986 2 4679999999854
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCC--cccceEEEeEEEeccccCCCCCC----CCccccCceEEEeecc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGT--MRDSFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNIE 246 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~--~~ds~li~Givl~~~~~~~~~~~----~~~~~~n~kIll~~~~ 246 (557)
+++.|++|+++|+..++++ . .+.+.++. ..++++++|++|+++|.+|+|.. |+.+++||+|+++|++
T Consensus 153 -~~~~l~~lv~eAv~~vg~~---g---~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~ 225 (529)
T CHL00093 153 -NDEEVGSMIADAIEKVGRE---G---VISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKK 225 (529)
T ss_pred -ChHHHHHHHHHHHHHhccC---C---ceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCC
Confidence 7899999999999999864 2 23333333 45679999999999999999854 4446999999999999
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHH--HHHh----CCcccccCC---
Q 008702 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQ--YFAD----RDIFCAGRV--- 317 (557)
Q Consensus 247 Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~--~l~~----~~I~~v~~v--- 317 (557)
|++.+. .+.++++++.+.+++|+|++++|++.++. ++++ .+|++++++
T Consensus 226 le~~~~-----------------------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~ 282 (529)
T CHL00093 226 ITLVQQ-----------------------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFG 282 (529)
T ss_pred CCchHH-----------------------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCC
Confidence 975321 26888999999999999999999985554 4577 589999887
Q ss_pred --ChHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEEECCeeEEEEEcCC---------CC-----------
Q 008702 318 --AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------SG----------- 370 (557)
Q Consensus 318 --~~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~---------~~----------- 370 (557)
++++|+|||.+|||++++ +++++++.++|+|+.+++.. +++++|+++. ..
T Consensus 283 ~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 359 (529)
T CHL00093 283 DRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSY 359 (529)
T ss_pred cchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHH
Confidence 458899999999999999 79999999999999999764 7888887421 11
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHh-hhcchHH
Q 008702 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR-AIAGKSQ 435 (557)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~-~~~~~~~ 435 (557)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++|+.+|++++. ..++++|
T Consensus 360 ~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~ 438 (529)
T CHL00093 360 EKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDEL 438 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHH
Confidence 388899999999999999999999999999999998 999999999999999999886 7889999
Q ss_pred HHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHH
Q 008702 436 FFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEA 515 (557)
Q Consensus 436 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~ 515 (557)
+++++|++||+.||++|++|||+|+.+++.+|+.. + .++|||+.+|+++||++.|||||+.||.++|+.|+|+
T Consensus 439 ~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~------~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~ 511 (529)
T CHL00093 439 IGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ------D-FEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASI 511 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc------C-CCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999653 2 6899999999999999999999999999999999999
Q ss_pred HHHHhchhhhhcCCCC
Q 008702 516 ACLILSVDETVKNPKS 531 (557)
Q Consensus 516 a~~lL~id~iI~~~~~ 531 (557)
|++||+||++|...|.
T Consensus 512 a~~iL~id~ii~~~~~ 527 (529)
T CHL00093 512 ASMILTTECIIVDKKE 527 (529)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999998764
No 35
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.8e-87 Score=727.34 Aligned_cols=467 Identities=21% Similarity=0.340 Sum_probs=423.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhcccc----ChHHHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~----hP~a~ll~~~a~~~~~~ 92 (557)
+..+|.+++..|++|+..++++|++||||+|++|||+++.|+++|||||+||+++|+++ ||+++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 45678899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+|||+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++. .+.|.++++++.+
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~------~~~l~~va~~s~~----- 153 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTS------NDEIAQVGTISAN----- 153 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHHHHhc-----
Confidence 99999999999999999999999999999999999999999999999999999863 2468999999854
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCc-ccceEEEeEEEeccccCCCCC----CCCccccCceEEEeeccc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~-~ds~li~Givl~~~~~~~~~~----~~~~~~~n~kIll~~~~L 247 (557)
+++.+++++++|+..++.+ +.|.+.. ++.. .++++++|++|+++|.+|||. .++.++++|+|++++..+
T Consensus 154 -~d~~i~~lv~~Av~~vg~~---g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i 227 (546)
T PRK14104 154 -GDAEIGKFLADAMKKVGNE---GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKL 227 (546)
T ss_pred -CchHHHHHHHHHHHHhccC---CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhh
Confidence 4588999999999999864 3444432 3455 478999999999999999983 456789999999998553
Q ss_pred cccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHh------CCcccccCCC---
Q 008702 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFAD------RDIFCAGRVA--- 318 (557)
Q Consensus 248 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~------~~I~~v~~v~--- 318 (557)
+++++ +.++++++.+.+++|||++++|++.++++|.. .+|+++++.+
T Consensus 228 -------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~ 283 (546)
T PRK14104 228 -------------SSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (546)
T ss_pred -------------cCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCc
Confidence 44444 67889999999999999999999999999984 5788885554
Q ss_pred --hHHHHHHHHHhCCeeccc-----ccCCCCCCccccceEEEEEECCeeEEEEEcCCCC---------------------
Q 008702 319 --EEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (557)
Q Consensus 319 --~~~le~Ia~~tGa~ii~s-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (557)
+++|+|||.+|||+++++ +++++..+||+|..++ +++++++++.||.++
T Consensus 284 ~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~---~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (546)
T PRK14104 284 RRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVM---IDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDY 360 (546)
T ss_pred chHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEE---EcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 899999999999999999 8999999999999988 477899999998774
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHH
Q 008702 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (557)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~ 436 (557)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++++++
T Consensus 361 ~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~ 438 (546)
T PRK14104 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKT 438 (546)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHH
Confidence 899999999999999999999999999999999998 99999999999999999874 45789999
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 008702 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (557)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (557)
++++|++||+.||++|++|||+|+.+++.+|+..| + .++|+|+.+|++.||++.|||||+.||+++|+.|+++|
T Consensus 439 ~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a 512 (546)
T PRK14104 439 GVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE-----Q-YSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVA 512 (546)
T ss_pred HHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC-----C-CcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998653 2 67999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCCCCccc
Q 008702 517 CLILSVDETVKNPKSESAQ 535 (557)
Q Consensus 517 ~~lL~id~iI~~~~~~~~~ 535 (557)
++||+||++|...|.+.+.
T Consensus 513 ~~iL~id~~I~~~~~~~~~ 531 (546)
T PRK14104 513 ALLITTEAMVAELPKKGGA 531 (546)
T ss_pred HHHHHHHHHHhcCCcCCCC
Confidence 9999999999888765543
No 36
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-90 Score=681.37 Aligned_cols=517 Identities=32% Similarity=0.577 Sum_probs=497.6
Q ss_pred cchhHhhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHH
Q 008702 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (557)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~ 84 (557)
|+.|...+..+.+.+.|..+...|++|++++++++++||||+.|.||+.++.|.+..||||..||+++++.||+|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 35778888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 008702 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (557)
Q Consensus 85 ~a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~t 164 (557)
++.+||+++||||||+++|++++|.++..++++++||..|+++|.+|++.++..+++.+++++.++ ...+..++.+
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~----~~km~~vi~~ 156 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD----QAKMLRVINS 156 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc----HHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999876 6889999999
Q ss_pred hhccCccCchhHHHHHHHHHHHHhhCCCC----C-CCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCce
Q 008702 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGD----R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (557)
Q Consensus 165 sl~sk~~~~~~~~ls~lv~~Ai~~v~~~~----d-~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~k 239 (557)
++.+|+.+.|++...+++.+|+..++.++ | ..+.++.+++||.+++|++++|+.+.+...||.| ...++||+
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkm---rr~Ienpr 233 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKM---RRAIENPR 233 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHH---HHHhhcCc
Confidence 99999999999999999999999998763 3 4678999999999999999999999999999865 68899999
Q ss_pred EEEeeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCCh
Q 008702 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (557)
Q Consensus 240 Ill~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~ 319 (557)
|+|+||+|+|++.++++.+.+..-+++...++.|++++..+++.+....++||++.++++|.+++||.+.||.+++++++
T Consensus 234 ivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rK 313 (527)
T KOG0364|consen 234 IVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRK 313 (527)
T ss_pred EEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeecccccCCCCCCccc-cceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 008702 320 EDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (557)
Q Consensus 320 ~~le~Ia~~tGa~ii~s~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~ 398 (557)
.|-.||++++||.++++.+++.+.+.|+ |+.|+.+++|+++|++|..|..++.|||++|||+..+++|.+|.++||+.+
T Consensus 314 tDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~v 393 (527)
T KOG0364|consen 314 TDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGV 393 (527)
T ss_pred cccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999997 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCC
Q 008702 399 VRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG 478 (557)
Q Consensus 399 ~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~ 478 (557)
.|+.+-+|+++||||++||.+++.|.+.+...++-++..+.+.+.||+.+||+|++|+|.+++..+..++..|+. |.
T Consensus 394 arn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~--G~- 470 (527)
T KOG0364|consen 394 ARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKE--GQ- 470 (527)
T ss_pred HHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcC--cc-
Confidence 999999999999999999999999999888888999999999999999999999999999999999999999987 77
Q ss_pred CCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 008702 479 APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKS 531 (557)
Q Consensus 479 ~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~ 531 (557)
..||+|..+|.+.||.+.++|+|..+|.+..++|++.+++|||||+++.....
T Consensus 471 ~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk 523 (527)
T KOG0364|consen 471 RVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKK 523 (527)
T ss_pred eeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeee
Confidence 88999999999999999999999999999999999999999999999976544
No 37
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=7.2e-87 Score=726.14 Aligned_cols=469 Identities=22% Similarity=0.350 Sum_probs=418.7
Q ss_pred ccccch--HHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChH----HHHHHHHHHhcc
Q 008702 17 DTSQGK--AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQD 90 (557)
Q Consensus 17 ~~~~~~--~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~a~~~~ 90 (557)
+..+|. ++|...+.+|..|+++|++||||+|++|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 446677 69999999999999999999999999999999999999999999999999999995 999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 008702 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (557)
Q Consensus 91 ~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~ 170 (557)
+++||||||++||+++||+++.+++++|+||..|++||+.|.+.+++.|++++.+++ + +.|.++|+++++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-----~~L~~vA~tS~~--- 207 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-----SELADVAAVSAG--- 207 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-----HHHHHHHHHhcc---
Confidence 999999999999999999999999999999999999999999999999999998875 2 469999999854
Q ss_pred cCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccc-eEEEeEEEeccccCCCC----CCCCccccCceEEEeec
Q 008702 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNI 245 (557)
Q Consensus 171 ~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds-~li~Givl~~~~~~~~~----~~~~~~~~n~kIll~~~ 245 (557)
+++.|++|+++|+.+++++ ..| ...+|++.+|+ ++++|++|+++|.+||| ++|+++++||+|+++|+
T Consensus 208 ---~~~~i~~liaeAv~~Vg~~---g~i--~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~ 279 (600)
T PLN03167 208 ---NNYEVGNMIAEAMSKVGRK---GVV--TLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDK 279 (600)
T ss_pred ---CcHHHHHHHHHHHHHhccC---CcE--EeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcc
Confidence 5779999999999999864 222 22368888887 89999999999999998 35789999999999998
Q ss_pred cccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHH------hCCcccccCCC-
Q 008702 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA------DRDIFCAGRVA- 318 (557)
Q Consensus 246 ~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~------~~~I~~v~~v~- 318 (557)
.| ++.+++ .++++++.+.++++||++++|++.++++|. ..+|+++++.+
T Consensus 280 ~i-------------~~~~~l-----------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~ 335 (600)
T PLN03167 280 KI-------------TNARDL-----------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGF 335 (600)
T ss_pred cc-------------CCHHHH-----------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccC
Confidence 64 566664 455678888999999999999999999998 67899988774
Q ss_pred ----hHHHHHHHHHhCCeecc-----cccCCCCCCccccceEEEEE-----ECC--------eeEEEEEcCC--------
Q 008702 319 ----EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQ-----VGN--------ERFNIFSGCP-------- 368 (557)
Q Consensus 319 ----~~~le~Ia~~tGa~ii~-----s~~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~g~~-------- 368 (557)
+++|+|||.+|||++++ ++++++.++||+|+.|++.+ +|+ +++.+|+++.
T Consensus 336 g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~ 415 (600)
T PLN03167 336 GERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYE 415 (600)
T ss_pred CcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHH
Confidence 89999999999999999 68889989999999999886 665 3666666643
Q ss_pred ----------CCceEEEE-eecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcchHH-H
Q 008702 369 ----------SGRTATIV-LRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQ-F 436 (557)
Q Consensus 369 ----------~~~~~TIl-l~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~-~ 436 (557)
....+|++ |||+|+.+++|+||+++|||+++++++++| +|||||++|++++.+|++++...++++| .
T Consensus 416 ~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~ 494 (600)
T PLN03167 416 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKV 494 (600)
T ss_pred HHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 01235555 999999999999999999999999999999 9999999999999999998877777666 4
Q ss_pred HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 008702 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (557)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (557)
+++++++||+.||++|++|||+|+.+++.+|+.. ++ .++|||+.+|++.||++.|||||+.||+++|+.|+++|
T Consensus 495 g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~-----~~-~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A 568 (600)
T PLN03167 495 GADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN-----DN-PKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVA 568 (600)
T ss_pred HHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc-----CC-CCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999753 33 78999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCCCCcc
Q 008702 517 CLILSVDETVKNPKSESA 534 (557)
Q Consensus 517 ~~lL~id~iI~~~~~~~~ 534 (557)
++||+||++|...|.+++
T Consensus 569 ~~iL~iD~iI~~~~~~~~ 586 (600)
T PLN03167 569 KTFLTSDCVVVEIKEPEP 586 (600)
T ss_pred HHHHHHHHHhhcCCCCCC
Confidence 999999999998765544
No 38
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-87 Score=667.84 Aligned_cols=510 Identities=36% Similarity=0.592 Sum_probs=479.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDG 96 (557)
+...|..++..|..|+.+++++|++||||-|++||++++.|++.+||||+|||+.+.++||++|+|++.++.|++++|||
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDg 92 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDG 92 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHHHHHHHHhhccCccCchh
Q 008702 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (557)
Q Consensus 97 ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (557)
||++++++++|++++.+|+..++||+.|++||+.|+..++++..+ ++.+++... ++.|.++++|+++||++....
T Consensus 93 ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg----~~~Lin~~ktsmsSK~i~~ds 168 (545)
T KOG0360|consen 93 TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLG----TQILINLAKTSMSSKIIGMDS 168 (545)
T ss_pred ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcc----hHHHHHHHHhhhcceecccch
Confidence 999999999999999999999999999999999999999999976 577777654 789999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCC-------CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeecccc
Q 008702 176 EFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (557)
Q Consensus 176 ~~ls~lv~~Ai~~v~~~~-------d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le 248 (557)
++|++++++|+..+.--+ ..+.|.|.+-.|.+.-||.+++|+.++...++.. ||.++.|+||+++|+.|.
T Consensus 169 ~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~---m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 169 DFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQM---MPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhc---cccccccceeeeEecccc
Confidence 999999999998775321 3677899999999999999999999999988754 589999999999999999
Q ss_pred ccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHH
Q 008702 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (557)
Q Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~ 328 (557)
..+.+..-.+.+.++++++++.+.|....++.+++|...|+|||+++++|||+.+.||.++|+++++|+++++|++|+++
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iaka 325 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKA 325 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHh
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCC------CCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008702 329 TGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (557)
Q Consensus 329 tGa~ii~s~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~ 402 (557)
||+++++++.++ ++..+|+|+.|.+.+|+++.++++.|.+.. .|+|+|||++++.+||++|.+|||||+++..
T Consensus 326 tGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 326 TGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred hCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 999999998754 567799999999999999999999997666 9999999999999999999999999999999
Q ss_pred hhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCC-----
Q 008702 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE----- 477 (557)
Q Consensus 403 ~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~----- 477 (557)
++++++|||||++|.+++-+|++|+.+...++|+++..|+.||.+||++|+.|++.|+.+++++++..|......
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988642111
Q ss_pred CCCeEEecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCcc
Q 008702 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESA 534 (557)
Q Consensus 478 ~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~~ 534 (557)
..|+|.|+.+|++.|.++.|+++|..+|...|+.|+|.+..+||||++|.-.|..+.
T Consensus 485 ~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 485 LKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred chhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 268999999999999999999999999999999999999999999999988877654
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-85 Score=657.84 Aligned_cols=513 Identities=27% Similarity=0.468 Sum_probs=476.3
Q ss_pred cchhHhhcccccccccc-hHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHH
Q 008702 5 MQPQIILLKEGTDTSQG-KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (557)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~ 83 (557)
+.+..+.|++|+.+.+| +++...|+.||+.++++++|+|||+||+|||+|+.|++++|||.+||+++++++||+++||+
T Consensus 7 ~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv 86 (537)
T KOG0362|consen 7 KAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLV 86 (537)
T ss_pred CCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHH
Confidence 33557788999877777 55999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 008702 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (557)
Q Consensus 84 ~~a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~ 163 (557)
++++.|+++.||||+++|+|+++||++|.++|..|++|..|++||+.|.+.+++.|+++.+..-.+. ++...+++
T Consensus 87 ~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~-----~d~~~~~r 161 (537)
T KOG0362|consen 87 EATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDL-----EDKEWALR 161 (537)
T ss_pred HHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccc-----cChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999765421111 12227888
Q ss_pred HhhccCccCchhHHHHHHHHHHHHhhCCC--CCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEE
Q 008702 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDG--DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKIL 241 (557)
Q Consensus 164 tsl~sk~~~~~~~~ls~lv~~Ai~~v~~~--~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIl 241 (557)
+++.||... +.+++++++++|+..+.+. .+.++|+|+++.|+++++|+++.|++|++... ..++.-..+||.
T Consensus 162 s~i~skq~~-~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e-----G~v~~ak~arvA 235 (537)
T KOG0362|consen 162 SVIMSKQYG-NEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE-----GEVKSAKDARVA 235 (537)
T ss_pred HHHHHhhcc-hHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccC-----CcccccccceeE
Confidence 999888743 6889999999999998876 37899999999999999999999999998875 235777889999
Q ss_pred EeeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHH
Q 008702 242 LLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (557)
Q Consensus 242 l~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~ 321 (557)
+++||++...+++++++.+++++++..|.+.|...+...++.|...|+++|++...+++++++||++++|++++--++.|
T Consensus 236 vf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~e 315 (537)
T KOG0362|consen 236 VFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFD 315 (537)
T ss_pred EEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcC-CCCceEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 008702 322 LLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGC-PSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (557)
Q Consensus 322 le~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~-~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~ 400 (557)
|.||++..||++++.+..+....+|+|+.|....+|+.+++.|... ...+..||+|||++...+|+.||+++|++++.+
T Consensus 316 LrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK 395 (537)
T KOG0362|consen 316 LRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYK 395 (537)
T ss_pred HHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhh
Confidence 9999999999999999999999999999999999999999999853 356899999999999999999999999999999
Q ss_pred HHhhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCC
Q 008702 401 RATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP 480 (557)
Q Consensus 401 ~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~ 480 (557)
...++++++||+|++|++|+..|.+++.+.++..|+++..|++||+.+|++|++|+|+++.+++++|...|.. | .+
T Consensus 396 ~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~--g--~~ 471 (537)
T KOG0362|consen 396 ALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQG--G--KN 471 (537)
T ss_pred hhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcC--C--Cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998863 3 56
Q ss_pred eEEecCCC-cccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCC
Q 008702 481 YGVDINTG-GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSE 532 (557)
Q Consensus 481 ~Gid~~~g-~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~ 532 (557)
.|+|+... ...|+.++||||-+..|.++++.|+++|+++|++|+||+++|..
T Consensus 472 ~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~ag 524 (537)
T KOG0362|consen 472 LGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAG 524 (537)
T ss_pred ceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccC
Confidence 88888776 58999999999999999999999999999999999999998774
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-84 Score=635.01 Aligned_cols=500 Identities=26% Similarity=0.471 Sum_probs=476.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDG 96 (557)
+..+-.+++.-|+.++..+.+++++.+||.|..||++++.|++.+|+||.+.+.+|+++||.+-++..++.+|++..|||
T Consensus 11 Ev~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDG 90 (520)
T KOG0359|consen 11 EVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDG 90 (520)
T ss_pred HHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCC
Confidence 34456678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008702 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (557)
Q Consensus 97 ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (557)
|||+|+|+++|+++|..++..|+||..|++||+.|.+.++++|+..+.+++ ++.|..+++|+|.+|+...-.+
T Consensus 91 ttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-------~~~L~~va~tsl~Tkv~~~la~ 163 (520)
T KOG0359|consen 91 TTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-------RETLKDVARTSLRTKVHAELAD 163 (520)
T ss_pred cceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHhhcCcccHHHHh
Confidence 999999999999999999999999999999999999999999997766654 6899999999999999888899
Q ss_pred HHHHHHHHHHHhhCCCC---CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccccccc
Q 008702 177 FFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEK 253 (557)
Q Consensus 177 ~ls~lv~~Ai~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~ 253 (557)
.+++++++|+..+.... |+++++|+++...+..|+.+++|+++||+..||.| |++++|++||++|.+|||++++
T Consensus 164 ~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdm---p~~~e~a~iL~~NvSLEYEK~E 240 (520)
T KOG0359|consen 164 VLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDM---PRRVEDAYILICNVSLEYEKPE 240 (520)
T ss_pred HhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCccc---ccchhceEEEEeeccccccccc
Confidence 99999999999887432 78999999999999999999999999999999875 8999999999999999999999
Q ss_pred cCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe----EEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHh
Q 008702 254 ENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK----VVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (557)
Q Consensus 254 ~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~----lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~t 329 (557)
.++.|.+++.+|.+.+...|++++...+++|++++.. |||+|++|||..++.|++.||+++++.++.+|||+..+|
T Consensus 241 insgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lac 320 (520)
T KOG0359|consen 241 INSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLAC 320 (520)
T ss_pred cccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhh
Confidence 9999999999999999999999999999999988755 678999999999999999999999999999999999999
Q ss_pred CCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCcee
Q 008702 330 GGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVV 409 (557)
Q Consensus 330 Ga~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vv 409 (557)
|+..++++++++++.+|+|+.+++.++|+++|+|+++|++++.|||+++||+.+.+.+.|++++|+|++++++++++.++
T Consensus 321 GG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i 400 (520)
T KOG0359|consen 321 GGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGI 400 (520)
T ss_pred ccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCc
Q 008702 410 AGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGG 489 (557)
Q Consensus 410 pGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~ 489 (557)
||+|++|..++++|+...++.+++.++++++|++||..+|++|++|+|+|+.+.+.+|...|.. ...|+|+.+|+
T Consensus 401 ~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~-----~~~g~dl~~g~ 475 (520)
T KOG0359|consen 401 PGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEV-----TLRGLDLFRGE 475 (520)
T ss_pred cCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhh-----hhcccccccCC
Confidence 9999999999999998778899999999999999999999999999999999999999998865 44699999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 008702 490 IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKS 531 (557)
Q Consensus 490 ~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~ 531 (557)
-.+....||||.+.||++.|.++.-+|+.||-+|+++.++.+
T Consensus 476 ~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 476 ECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred ccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999988754
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-67 Score=502.06 Aligned_cols=374 Identities=31% Similarity=0.546 Sum_probs=353.6
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDG 96 (557)
....|.++.++|+.+..++++++++|+||+|++|+++.+.|++.+|||| .|++++++...+..|+.++|||
T Consensus 22 ~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdG 92 (400)
T KOG0357|consen 22 DRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDG 92 (400)
T ss_pred chhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccC
Confidence 6689999999999999999999999999999999999999999999999 6899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhH
Q 008702 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (557)
Q Consensus 97 ttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (557)
||.+++|++.+++++.+++.+|+||..|.+||+.+.+.+++.|++.+-+++
T Consensus 93 tTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e----------------------------- 143 (400)
T KOG0357|consen 93 TTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE----------------------------- 143 (400)
T ss_pred CcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-----------------------------
Confidence 999999999999999999999999999999999999988877765432210
Q ss_pred HHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccccccccCc
Q 008702 177 FFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENA 256 (557)
Q Consensus 177 ~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~ 256 (557)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHhCCeeccc
Q 008702 257 EIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTS 336 (557)
Q Consensus 257 ~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ii~s 336 (557)
+..+++++++.|+++++|||++||.+.++|.+++..+++||.-.++|.||..||+.|+++
T Consensus 144 --------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVpr 203 (400)
T KOG0357|consen 144 --------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPR 203 (400)
T ss_pred --------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeecc
Confidence 246688999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccceEEEEEEC--CeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCch
Q 008702 337 VNNVVDEVLGTCEHFEERQVG--NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414 (557)
Q Consensus 337 ~~~l~~~~lG~~~~v~~~~ig--~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~ 414 (557)
|++|+++.||+|+.|++..+| .|++..++.|++++.+||.+||.+..+++|.||++|||||++|+++++.++|+|||+
T Consensus 204 F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGa 283 (400)
T KOG0357|consen 204 FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGA 283 (400)
T ss_pred HhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCch
Confidence 999999999999999999998 689999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccc
Q 008702 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSF 494 (557)
Q Consensus 415 ~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~ 494 (557)
+|+.||-++.+.+.++++.+||++.+|++||++||..|++|+|++|++.++++++.+-.. ++ +++|+|+.-..-.||.
T Consensus 284 aEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~-~~-~~lGidcl~~G~nDMk 361 (400)
T KOG0357|consen 284 AEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKE-MN-PALGIDCLHKGTNDMK 361 (400)
T ss_pred HHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHh-cC-cccCcchhccCchhhh
Confidence 999999999999999999999999999999999999999999999999999999876552 34 8899999888889999
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCC
Q 008702 495 ANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (557)
Q Consensus 495 ~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~ 530 (557)
+.+|+||+..|++.+..|++++.|||+||+|+....
T Consensus 362 ~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 362 EQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred hhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 999999999999999999999999999999987654
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-60 Score=485.77 Aligned_cols=461 Identities=24% Similarity=0.337 Sum_probs=408.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChH----HHHHHHHHHhcccc
Q 008702 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSE 92 (557)
Q Consensus 17 ~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~a~~~~~~ 92 (557)
+..+|.++|..-++++..|+++|.+|+||+||+++|.+..|.|.|||||.|+.+++.+.+++ ++++++++.+.++.
T Consensus 18 ~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~ 97 (550)
T KOG0356|consen 18 DIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEE 97 (550)
T ss_pred ccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCc
Confidence 56899999999999999999999999999999999999999999999999999999999995 89999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccC
Q 008702 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (557)
Q Consensus 93 ~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (557)
+||||||+++|++++..++.+-+.+|.+|..+.+|+..+.+.+.+.|.++++++... +.+.++|..+ .
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~------eeIaqVAtiS------A 165 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTP------EEIAQVATIS------A 165 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCH------HHHHHHHhhh------c
Confidence 999999999999999999999999999999999999999999999999999999863 6889999877 5
Q ss_pred chhHHHHHHHHHHHHhhCCCCCCCCceeeee-cCCCccc-ceEEEeEEEeccccCCCCCC----CCccccCceEEEeecc
Q 008702 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKV-PGGTMRD-SFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNIE 246 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i-~gg~~~d-s~li~Givl~~~~~~~~~~~----~~~~~~n~kIll~~~~ 246 (557)
+.+..+.+++.+|+.+++.+ +|+.+ .|....| .++++|+.|+++|.+|||.+ ...++++|+++|.+.+
T Consensus 166 ngD~~ig~li~~a~~kvG~~------GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk 239 (550)
T KOG0356|consen 166 NGDKEIGNLISDAMKKVGRK------GVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK 239 (550)
T ss_pred CCcHHHHHHHHHHHHHhCcC------CeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh
Confidence 67899999999999999987 66665 4556665 58999999999999999954 4468999999998876
Q ss_pred ccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHH--h-C-C-------ccccc
Q 008702 247 LELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA--D-R-D-------IFCAG 315 (557)
Q Consensus 247 Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~--~-~-~-------I~~v~ 315 (557)
+ +++++ |.+.++.-.+...++++.+.+++..++..|- + . + ...|+
T Consensus 240 i-------------~~v~~-----------ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfG 295 (550)
T KOG0356|consen 240 I-------------SSVQS-----------IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFG 295 (550)
T ss_pred h-------------hHHHH-----------HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCc
Confidence 4 45555 5777888888888999999999998777654 2 1 1 22468
Q ss_pred CCChHHHHHHHHHhCCeeccc------ccCCCCCCccccceEEEEEE---------------------------------
Q 008702 316 RVAEEDLLRVAAATGGTVQTS------VNNVVDEVLGTCEHFEERQV--------------------------------- 356 (557)
Q Consensus 316 ~v~~~~le~Ia~~tGa~ii~s------~~~l~~~~lG~~~~v~~~~i--------------------------------- 356 (557)
+-++..+.+++.+||+.++.. ++..+..++|.|..+....-
T Consensus 296 dnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye 375 (550)
T KOG0356|consen 296 DNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYE 375 (550)
T ss_pred chHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 899999999999999999863 55677789999988775320
Q ss_pred ---CCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHHHHHHHHhhhcch
Q 008702 357 ---GNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGK 433 (557)
Q Consensus 357 ---g~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~ 433 (557)
.+++...|+|+ +++|.++|.++.+++|.+.+++|||+++++++++| +|||||+++++|+..|.+.....+.+
T Consensus 376 ~ekl~er~a~ls~g----vavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~ 450 (550)
T KOG0356|consen 376 KEKLNERLAKLSGG----VAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFD 450 (550)
T ss_pred HhHHHHHHHHhcCC----eEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchH
Confidence 12344455554 99999999999999999999999999999999999 99999999999999999866544567
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccchHHHHHHHHHHH
Q 008702 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAAT 513 (557)
Q Consensus 434 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp~~vk~~~l~~A~ 513 (557)
++.+++++.+||..|..++++|||.|+..++.+++. ..+|||..+|+++||++.||+||+.|.+.+|..|.
T Consensus 451 ~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~ 521 (550)
T KOG0356|consen 451 QKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAA 521 (550)
T ss_pred hhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhh
Confidence 888899999999999999999999999999999983 24899999999999999999999999999999999
Q ss_pred HHHHHHhchhhhhcCCCCCc
Q 008702 514 EAACLILSVDETVKNPKSES 533 (557)
Q Consensus 514 e~a~~lL~id~iI~~~~~~~ 533 (557)
.+|++|++++.+|...|.+.
T Consensus 522 ~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 522 GVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred HHHHHHhhheeEEEeccccc
Confidence 99999999999999988876
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=4.5e-39 Score=318.83 Aligned_cols=228 Identities=25% Similarity=0.392 Sum_probs=211.1
Q ss_pred CchhHHHHHHHHHHHHhhCCC-----C-CCC-CceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEee
Q 008702 172 GGEKEFFASMVVDAVGAIGDG-----D-RLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (557)
Q Consensus 172 ~~~~~~ls~lv~~Ai~~v~~~-----~-d~~-~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~ 244 (557)
..|.++|++++++|+..+.+. . |.+ +|+|++++||+++||++++|+++++++.++. ||++++||||++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~---m~~~i~n~kIlll~ 93 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR---MPSKIKNPRILLLQ 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCcc---CCcccCCCcEEEEe
Confidence 468899999999999998643 1 443 6999999999999999999999999998865 58999999999999
Q ss_pred ccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHH
Q 008702 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (557)
Q Consensus 245 ~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~ 324 (557)
++|++++++ +++++++++.+.|++++.+++++|.+.|++|||++++|++.+++||.++||++++++++++|+|
T Consensus 94 ~~Le~~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r 166 (261)
T cd03334 94 GPLEYQRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER 166 (261)
T ss_pred eeecccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence 999999876 3578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccc-ccCCCCCCccccceEEEEEECC-----eeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 008702 325 VAAATGGTVQTS-VNNVVDEVLGTCEHFEERQVGN-----ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (557)
Q Consensus 325 Ia~~tGa~ii~s-~~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~ 398 (557)
||++|||+++++ .++++++.+|+|+.|++.++|+ ++|++|+||+.++.+||+|||+|+..++|.||+++||+++
T Consensus 167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 4589999999999999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHhhCCcee
Q 008702 399 VRRATKNSTVV 409 (557)
Q Consensus 399 ~~~~~~~g~vv 409 (557)
++++..+..++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99998887543
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=3.2e-36 Score=290.70 Aligned_cols=205 Identities=43% Similarity=0.692 Sum_probs=195.6
Q ss_pred HHHHHHHHHhhccCccCchhHHHHHHHHHHHHhhCCCC---CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCC
Q 008702 156 RLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP 232 (557)
Q Consensus 156 ~~l~~ia~tsl~sk~~~~~~~~ls~lv~~Ai~~v~~~~---d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~ 232 (557)
+.|.++|+|+++||+ +.|++.|++++++|+..++++. +.++|+|++++||+++||++++|++|++++.+++| |
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m---~ 77 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM---P 77 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC---C
Confidence 478999999999999 9999999999999999998742 57899999999999999999999999999999876 8
Q ss_pred ccccCceEEEeeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcc
Q 008702 233 KKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312 (557)
Q Consensus 233 ~~~~n~kIll~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~ 312 (557)
++++||+|++++++|++ ||+++++|++.++++|.++||+
T Consensus 78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~ 116 (209)
T cd03333 78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIM 116 (209)
T ss_pred eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCE
Confidence 99999999999999975 9999999999999999999999
Q ss_pred cccCCChHHHHHHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHH
Q 008702 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSL 392 (557)
Q Consensus 313 ~v~~v~~~~le~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i 392 (557)
+++++++++|+|||++|||++++++++++++.+|+|+.|++.++++++|++|++|..+..|||+|||+|+.+++|.||++
T Consensus 117 ~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l 196 (209)
T cd03333 117 AVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSL 196 (209)
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHhhC
Q 008702 393 HDAIMIVRRATKN 405 (557)
Q Consensus 393 ~dal~~~~~~~~~ 405 (557)
+||++++++++++
T Consensus 197 ~dal~~~~~~~~~ 209 (209)
T cd03333 197 HDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.88 E-value=2e-22 Score=226.07 Aligned_cols=232 Identities=22% Similarity=0.345 Sum_probs=207.1
Q ss_pred chhHHHHHHHHHHHHhhCCCC------C-CCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeec
Q 008702 173 GEKEFFASMVVDAVGAIGDGD------R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (557)
Q Consensus 173 ~~~~~ls~lv~~Ai~~v~~~~------d-~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~ 245 (557)
.|.+.+..++.+|...+.++- | .+||+|++|.+|...||+++.|+++.+..+|.. |..++++|+|+++.+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~---M~~~~e~prilll~g 408 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKR---MATKYENPRILLLGG 408 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhh---hhhhccCCceEEEec
Confidence 578889999999999988741 2 689999999999999999999999999999865 588999999999999
Q ss_pred cccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHH
Q 008702 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (557)
Q Consensus 246 ~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~I 325 (557)
+|+|++... ....++.+.++|+++++.+|.+|...+++++++.++|+..|+++|.+.+|.++-++++.-|+||
T Consensus 409 ~leyqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRI 481 (1598)
T KOG0230|consen 409 PLEYQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERI 481 (1598)
T ss_pred chhhhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHH
Confidence 999987542 2345666777799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccccCCCCCCccccceEEEEEEC-----CeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 008702 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVG-----NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (557)
Q Consensus 326 a~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~ 400 (557)
+++|||.|+++++.++...+|+|..|++.++. .+.+.+|+||+....|||+|||....++.++|+.++-++.+..
T Consensus 482 sR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay 561 (1598)
T KOG0230|consen 482 SRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAY 561 (1598)
T ss_pred HHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877665 4579999999999999999999999999999999999999888
Q ss_pred HHhhCCceecCCch
Q 008702 401 RATKNSTVVAGGGA 414 (557)
Q Consensus 401 ~~~~~g~vvpGGG~ 414 (557)
++.-+-.++..-|+
T Consensus 562 ~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 562 HLALETSFLADEGA 575 (1598)
T ss_pred HHHHhhhhhhccCC
Confidence 87555445555554
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=41.38 E-value=81 Score=27.43 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCC
Q 008702 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (557)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~ 318 (557)
...+.+++.|+++|++. .+++.+..+|..+||-+..-..
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCC
Confidence 45788899999999998 6899999999999998876555
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=38.31 E-value=51 Score=27.05 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHH
Q 008702 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (557)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~ 324 (557)
...+.+...++++|++. ++++.+...|.++||.++.... ..++.
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 34556666899999996 6999999999999999886555 34443
No 48
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=36.24 E-value=71 Score=25.63 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHH
Q 008702 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (557)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~ 324 (557)
...+.+...+++++|+. .|++.+...|.++||-++.. ...+++.
T Consensus 44 ~~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~-~~~~i~~ 87 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG-AGGDIEE 87 (94)
T ss_dssp HHHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES-TSSBHHH
T ss_pred hHHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc-CCCCHHH
Confidence 34555566899999887 58999999999999998876 3333433
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.88 E-value=96 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCC
Q 008702 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (557)
Q Consensus 280 ~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~ 318 (557)
..+.+...++++|++. ++++.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 3455667899999998 4999999999999999886554
No 50
>PF12846 AAA_10: AAA-like domain
Probab=28.28 E-value=1.3e+02 Score=29.74 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCeEEEecCcccHHH-----HHHHHhCCcccccCCChHHHHHHHHHhCCe
Q 008702 276 IIYDKLDKCVQSGAKVVLSRLAIGDLA-----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (557)
Q Consensus 276 ~i~~~v~~i~~~~~~lii~~~~i~~~a-----l~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ 332 (557)
.+..++....+.++.+++....+++.. ..++...+...+.+....+.+.+++..|.+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 367788888999999999999998887 789999999999999988888899988754
No 51
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=26.67 E-value=2.1e+02 Score=23.09 Aligned_cols=50 Identities=6% Similarity=0.004 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCcccccCCChHHHHHHH
Q 008702 277 IYDKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVA 326 (557)
Q Consensus 277 i~~~v~~i~~~~~~lii~~~~i~~~al----~~l~~~~I~~v~~v~~~~le~Ia 326 (557)
+++.++.+.+-.+.+++.++++++... .+|.++||..+.--++.+|.+.+
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 345567777677889999999997543 45678999988866676666544
No 52
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=24.90 E-value=69 Score=31.36 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChH
Q 008702 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (557)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~ 320 (557)
.+++.|....|+++|++...-..++.++..+.||..++.++..
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 4678999999999999999999999999999999988766643
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.11 E-value=1.7e+02 Score=26.82 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHHHcCCeEEEecCcccHHHHHHHHhCCcccc--cCCC-----hHHHHHHHHHhCC
Q 008702 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA--GRVA-----EEDLLRVAAATGG 331 (557)
Q Consensus 281 v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v--~~v~-----~~~le~Ia~~tGa 331 (557)
++.|.+.+++|||......+...+.|.+.||.++ .... .+.++.++.++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 6778888999999866555546677888998542 2221 2345667777764
No 54
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=23.48 E-value=85 Score=30.77 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=25.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008702 373 ATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (557)
Q Consensus 373 ~TIll~G~t~~~l~e~k~~i~dal~~~~~~ 402 (557)
.||+|+| ++..+++.++.|+|-+++++-.
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~aVl 149 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYAVL 149 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhheee
Confidence 4999999 6899999999999999987643
No 55
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=22.99 E-value=77 Score=31.56 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChH
Q 008702 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (557)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~ 320 (557)
.+++.|....|+++|++...-.+.+.++..+.||..++.++..
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 4678999999999999999999999999999999988766543
No 56
>PRK07714 hypothetical protein; Provisional
Probab=21.99 E-value=2.8e+02 Score=22.94 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCcccccCCChHHHHHHHHHhCC
Q 008702 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGG 331 (557)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~al----~~l~~~~I~~v~~v~~~~le~Ia~~tGa 331 (557)
...+.+.+-.+.+||.+.+.++... ++|..++|.++...++++ |..++|-
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~e---LG~a~Gk 78 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQ---LGHAIGK 78 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHH---HHHHhCC
Confidence 4456666667889999998887433 345677888876665544 4556664
No 57
>PRK07283 hypothetical protein; Provisional
Probab=20.89 E-value=2.9e+02 Score=22.81 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCcccccCCChHHHHHHHHHhCC
Q 008702 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGG 331 (557)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~al----~~l~~~~I~~v~~v~~~~le~Ia~~tGa 331 (557)
...+.+.+-.+.+||.+.+.++... +.|..++|.++....+ +.|..++|-
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 4456666667889999999887655 5566778888765555 446666663
No 58
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.53 E-value=3.2e+02 Score=21.89 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCcccccCCChHHHHHHHHHhCCe
Q 008702 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (557)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~al----~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ 332 (557)
..++.+.+-.+.+||.+.+.++... +++..++|.+...-++ +.|.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 4466677778899999999887543 3466789988654444 5566666643
No 59
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.53 E-value=3.1e+02 Score=21.89 Aligned_cols=52 Identities=10% Similarity=0.016 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCcccccCCChHHHHHHHHHhCCe
Q 008702 278 YDKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (557)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~al----~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ 332 (557)
+..++.|.+-.+.+||.+.+.++... ++|+.++|.++.--++ +.|..++|-.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~ 72 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIE 72 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCC
Confidence 34566677778899999999987543 4567888887664444 4456666643
No 60
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.11 E-value=2.2e+02 Score=27.34 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=36.4
Q ss_pred HHHHHHcCCeEEEecCcccH-HHHHHHHhCCcccccC--CC----hHHHHHHHHHhCCe
Q 008702 281 LDKCVQSGAKVVLSRLAIGD-LATQYFADRDIFCAGR--VA----EEDLLRVAAATGGT 332 (557)
Q Consensus 281 v~~i~~~~~~lii~~~~i~~-~al~~l~~~~I~~v~~--v~----~~~le~Ia~~tGa~ 332 (557)
+++|.+.+|+|||.....++ ...+.|.+.+|.++-. -. .+.++.|+.++|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 77888999999998765444 3477888888864321 11 34577888888865
Done!