BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008703
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/515 (62%), Positives = 410/515 (79%), Gaps = 2/515 (0%)
Query: 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAH 72
KRESG KV NI A+K +ADIIRT LGP+SM+KMLLD GGIV+TNDGNAILRE+ V H
Sbjct: 3 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQH 62
Query: 73 PAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAV 132
PAAKSMIE+SRTQDEEVGDGTTSVI+LAGEML VAE F+++ HPTV+ AY KAL+D +
Sbjct: 63 PAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMI 122
Query: 133 AVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREV 192
+ L KI++P+DT++R TML ++ S I TK S++ L ++A+DA TV + G +E+
Sbjct: 123 STLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFE-ENGRKEI 181
Query: 193 DIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252
DIKKY +VEK+PGG +EDS VL+GVM NKDV P +MRR I NPRI+LLDS LEYKKGE+
Sbjct: 182 DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP-RMRRYIKNPRIVLLDSSLEYKKGES 240
Query: 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAI 312
QT+ E+ +EED+ +L+MEEEYI+ LC I++ KPD+VITEKG+SDLA HYL +A ++AI
Sbjct: 241 QTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAI 300
Query: 313 RRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKAC 372
RR+RKTDNNRIA+ACGA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI +CKDPKAC
Sbjct: 301 RRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKDPKAC 360
Query: 373 TVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGI 432
T+LLRGASK++L+EVERNLQDAM V RN++ +P+LVPGGGA+E+ V+ L +KS ++ G+
Sbjct: 361 TILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGV 420
Query: 433 EKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKE 492
E+WPY A A A E IPRTL QNCG + IR +T+L+ KH G++G TG + DMKE
Sbjct: 421 EQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKE 480
Query: 493 RKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527
IW+ VK QT+KTA+E A +LLRIDDIVSG K
Sbjct: 481 LGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 515
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/592 (48%), Positives = 385/592 (65%), Gaps = 64/592 (10%)
Query: 1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTND 60
M +PV+ + S +R +G + +NI A+KAVAD+IRT LGP++MLKMLLD GG+V+TND
Sbjct: 1 MQAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTND 60
Query: 61 GNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEML-HVAEEFIDKNYHPTV 119
G+AILRE+DVAHPAAKSM+ELSRTQDEEVGDGTT+VI+LAGE+L A I+KN HP +
Sbjct: 61 GHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVI 120
Query: 120 ICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATT 179
I +A KAL DA+ V+ +++ P+D + A M L+++ IGTK+ + + + +LA+DA
Sbjct: 121 IIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVK 180
Query: 180 TVGVDLGQGLR-----EVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIV 234
TV DLGQ + E+DIK+Y++VEK+PGG + DSRVLKGV+ NKDVV P KM R I
Sbjct: 181 TVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHP-KMSRHIE 239
Query: 235 NPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEK 294
NPR++LLD PLEYKKGE+QTN E+ KEEDW +L++EEE ++ +C QIL +P LVITEK
Sbjct: 240 NPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEK 299
Query: 295 GLSDLACHYLSKA--------------------GVSAIRRLRKTDNNRIAKACGAVIV-- 332
G+SDLA HYL K G + + R+ + + CG V
Sbjct: 300 GVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEM 359
Query: 333 ------NRPDELQESDVGTGAG--LFEV----KKIGDEFFAFIVDCK------------- 367
+ D +E G+G FE ++ F A +
Sbjct: 360 IGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSG 419
Query: 368 ---------DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTV 418
KACT++LRG SKD+LNE++RNLQDAM+VARN++ +P L PGGGATE+ V
Sbjct: 420 HHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAV 479
Query: 419 SATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWI 478
S L +K+ +EGI++WPY+A A A E IPRTL QN G + IR ++ L+ KHA G N
Sbjct: 480 SVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQG-NFTT 538
Query: 479 GIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 530
GIDG+ G I DM IW+ +K Q+ KTAIE+AC+LLR+DDIVSG++K++
Sbjct: 539 GIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGVRKQE 590
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 200/523 (38%), Positives = 326/523 (62%), Gaps = 5/523 (0%)
Query: 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGN 62
PV++L + +R G NI A++ +A+ +RTTLGP+ M KML+D+ G IVVTNDG
Sbjct: 7 QPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGA 66
Query: 63 AILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICR 122
IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L AEE +D+N HP++I +
Sbjct: 67 TILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITK 126
Query: 123 AYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVG 182
Y A E A +LD+IA+ +D +D T+L + + I K +L+A LA++A V
Sbjct: 127 GYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA 186
Query: 183 VDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242
+ G VD+ IK EK G +E+S +++GV+ +K+VV P +M +++ N +I L++
Sbjct: 187 -EKKDGKYVVDLDN-IKFEKKAGEGVEESELVRGVVIDKEVVHP-RMPKRVENAKIALIN 243
Query: 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACH 302
LE KK E + + L+ EE+ ++++ I + ++V +KG+ DLA H
Sbjct: 244 EALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQH 303
Query: 303 YLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF 362
YL+K G+ A+RR++K+D ++AKA GA IV +L D+G A + E +K+ E F
Sbjct: 304 YLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGY-AEVVEERKLAGENMIF 362
Query: 363 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATL 422
+ CK+PKA T+L+RG ++ +++EVER L+DA+ V ++++++ ++P GGA E+ ++ L
Sbjct: 363 VEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRL 422
Query: 423 KQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDG 482
+ + + G E E A A + IP+TLA+N G++ + + + +H N IGID
Sbjct: 423 DEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDV 481
Query: 483 NTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525
G +DM E+ I + VK Q K+A EAA M+LRIDD+++
Sbjct: 482 FEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA 524
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/523 (38%), Positives = 325/523 (62%), Gaps = 5/523 (0%)
Query: 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGN 62
PV++L + +R G NI A++ +A+ +RTTLGP+ M KML+D+ G IVVTND
Sbjct: 7 QPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCA 66
Query: 63 AILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICR 122
IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L AEE +D+N HP++I +
Sbjct: 67 TILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITK 126
Query: 123 AYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVG 182
Y A E A +LD+IA+ +D +D T+L + + I K +L+A LA++A V
Sbjct: 127 GYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA 186
Query: 183 VDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242
+ G VD+ IK EK G +E+S +++GV+ +K+VV P +M +++ N +I L++
Sbjct: 187 -EKKDGKYVVDLDN-IKFEKKAGEGVEESELVRGVVIDKEVVHP-RMPKRVENAKIALIN 243
Query: 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACH 302
LE KK E + + L+ EE+ ++++ I + ++V +KG+ DLA H
Sbjct: 244 EALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQH 303
Query: 303 YLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF 362
YL+K G+ A+RR++K+D ++AKA GA IV +L D+G A + E +K+ E F
Sbjct: 304 YLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGY-AEVVEERKLAGENMIF 362
Query: 363 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATL 422
+ CK+PKA T+L+RG ++ +++EVER L+DA+ V ++++++ ++P GGA E+ ++ L
Sbjct: 363 VEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRL 422
Query: 423 KQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDG 482
+ + + G E E A A + IP+TLA+N G++ + + + +H N IGID
Sbjct: 423 DEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDV 481
Query: 483 NTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525
G +DM E+ I + VK Q K+A EAA M+LRIDD+++
Sbjct: 482 FEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA 524
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/523 (38%), Positives = 325/523 (62%), Gaps = 5/523 (0%)
Query: 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGN 62
PV++L + +R G NI A++ +A+ +RTTLGP+ M KML+D+ G IVVTND
Sbjct: 7 QPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCA 66
Query: 63 AILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICR 122
IL ++D+ HPAAK M+E+++TQD+E GDGTT+ +V+AGE+L AEE +D+N HP++I +
Sbjct: 67 TILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIK 126
Query: 123 AYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVG 182
Y A E A +LD+IA+ +D +D T+L + + I K +L+A LA++A V
Sbjct: 127 GYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVA 186
Query: 183 VDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242
+ G VD+ IK EK G +E+S +++GV+ +K+VV P +M +++ N +I L++
Sbjct: 187 -EKKDGKYVVDLDN-IKFEKKAGEGVEESELVRGVVIDKEVVHP-RMPKRVENAKIALIN 243
Query: 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACH 302
LE KK E + + L+ EE+ ++++ I + ++V +KG+ DLA H
Sbjct: 244 EALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQH 303
Query: 303 YLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF 362
YL+K G+ A+RR++K+D ++AKA GA IV +L D+G A + E +K+ E F
Sbjct: 304 YLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGY-AEVVEERKLAGENMIF 362
Query: 363 IVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATL 422
+ CK+PKA T+L+RG ++ +++EVER L+DA+ V ++++++ ++P GGA E+ ++ L
Sbjct: 363 VEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRL 422
Query: 423 KQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDG 482
+ + + G E E A A + IP+TLA+N G++ + + + +H N IGID
Sbjct: 423 DEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDV 481
Query: 483 NTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525
G +DM E+ I + VK Q K+A EAA M+LRIDD+++
Sbjct: 482 FEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA 524
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 207/531 (38%), Positives = 321/531 (60%), Gaps = 9/531 (1%)
Query: 4 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNA 63
P+LVLK+ +RE G NI+A+KA+AD +RTTLGP+ M KML+D+ G I+++NDG
Sbjct: 7 PILVLKEGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGAT 66
Query: 64 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 123
IL+E+DV HP AK ++E+S+ QD VGDGTT+ +VL+GE+L AE +D+ HPTVI
Sbjct: 67 ILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNG 126
Query: 124 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGV 183
Y A+ +A ++D+IA + D AT+ + + + K T D +ADL + A V
Sbjct: 127 YRLAVNEARKIIDEIAEK--STDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVA- 183
Query: 184 DLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243
++ G VD IKV+K GG + D++ + G++ +K+ V KM + N +I L+DS
Sbjct: 184 EVRDGKTIVDTAN-IKVDKKNGGSVNDTQFISGIVIDKEKV-HSKMPDVVKNAKIALIDS 241
Query: 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHY 303
LE KK E + ++ + L E + + +I K ++V+ +KG+ D+A HY
Sbjct: 242 ALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHY 301
Query: 304 LSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 363
L+K G+ A+RR++K+D ++AKA GA IV D+L S +G A E +KIGD+ F+
Sbjct: 302 LAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGE-AETVEERKIGDDRMTFV 360
Query: 364 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLK 423
+ CK+PKA ++L+RG + +++EVER L DA+ V ++ K + GGGA E ++ L
Sbjct: 361 MGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLA 420
Query: 424 QKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGN 483
+ ++S+ G E+ EA A A E IPRTLA+N GI+ I T+ L+ G +G+D +
Sbjct: 421 KYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGR-ISVGVDLD 479
Query: 484 TGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGS 534
+ DMK + + D VK ++A+E A M+LRIDD+++ KK P S
Sbjct: 480 NNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIAS--KKSTPPS 528
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 201/521 (38%), Positives = 333/521 (63%), Gaps = 5/521 (0%)
Query: 4 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNA 63
P+ +LK+ KRESG NI+A+ A+++ +R++LGPR M KML+D+ G IV+TNDG
Sbjct: 6 PIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVT 65
Query: 64 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 123
IL+E+DV HPAAK M+E+S+TQD VGDGTT+ +++AG +L A+ I++N HPTVI
Sbjct: 66 ILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEG 125
Query: 124 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGV 183
Y A E+A V+D+I+ I +++A +L + ++ + +K S D +A+++ +A +V
Sbjct: 126 YRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVA- 184
Query: 184 DLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243
+L G VD I+V K GG ++D++++ G++ +K+ V PG M + + +I LLD+
Sbjct: 185 ELRDGKYYVDFDN-IQVVKKQGGAIDDTQLINGIIVDKEKVHPG-MPDVVKDAKIALLDA 242
Query: 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHY 303
PLE KK E TN + + L EE + + +I ++VIT+KG+ D+A HY
Sbjct: 243 PLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHY 302
Query: 304 LSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 363
LS+AG+ A+RR++K+D +++AKA GA IV+ DE+ SD+GT + +V K+G+++ F+
Sbjct: 303 LSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQV-KVGEDYMTFV 361
Query: 364 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLK 423
CK+PKA ++L+RG ++ +++E+ER++ D++ V + +++ GGGAT ++ L+
Sbjct: 362 TGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLR 421
Query: 424 QKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGN 483
+ I G ++ E A A E IPR LA+N G++ I + L+ +HA G + GI+
Sbjct: 422 SYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTY-GINVF 480
Query: 484 TGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
TG I DM + + + V Q ++A EAA M+LRIDD+++
Sbjct: 481 TGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA 521
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 196/527 (37%), Positives = 329/527 (62%), Gaps = 11/527 (2%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 7 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 66
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 67 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 126
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 127 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 186
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 187 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVS-AQMPKKVTDAKIALLNCAIE 240
Query: 247 YKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYL 304
K E +T+AE+ + +++ ++ EE+ ++++ +I +++ +KG+ DLA HYL
Sbjct: 241 IK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYL 298
Query: 305 SKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIV 364
+K G+ A RR++K+D ++AKA GA ++ +L D+G AGL E +KI + F+
Sbjct: 299 AKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKISGDSMIFVE 357
Query: 365 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQ 424
+CK PKA T+L+RG ++ ++ EV R + DA+ V I++ ++V GGG+TE+ +S L++
Sbjct: 358 ECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLRE 417
Query: 425 KSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNT 484
+ I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ T
Sbjct: 418 YAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFT 477
Query: 485 GAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 531
GA+ DM E + + VK Q ++A E+ MLLRIDD+++ K + A
Sbjct: 478 GAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA 524
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/521 (37%), Positives = 326/521 (62%), Gaps = 11/521 (2%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 181 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVS-AQMPKKVTDAKIALLNCAIE 234
Query: 247 YKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYL 304
K E +T+AE+ + +++ ++ EE+ ++++ +I +++ +KG+ DLA HYL
Sbjct: 235 IK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYL 292
Query: 305 SKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIV 364
+K G+ A RR++K+D ++AKA GA ++ +L D+G AGL E +KI + F+
Sbjct: 293 AKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKISGDSMIFVE 351
Query: 365 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQ 424
+CK PKA T+L+RG ++ ++ EV R + DA+ V I++ ++V GGG+TE+ +S L++
Sbjct: 352 ECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLRE 411
Query: 425 KSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNT 484
+ I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ T
Sbjct: 412 YAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFT 471
Query: 485 GAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525
GA+ DM E + + VK Q ++A E+ MLLRIDD+++
Sbjct: 472 GAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAA 512
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 354 bits (909), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 196/527 (37%), Positives = 328/527 (62%), Gaps = 11/527 (2%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 7 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 66
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 67 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 126
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 127 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 186
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 187 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVS-AQMPKKVTDAKIALLNCAIE 240
Query: 247 YKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYL 304
K E +T+AE+ + +++ ++ EE+ ++++ +I +++ +KG+ DLA HYL
Sbjct: 241 IK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYL 298
Query: 305 SKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIV 364
+K G+ A RR++K+D ++AKA GA ++ L D+G AGL E +KI + F+
Sbjct: 299 AKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGD-AGLVEERKISGDSMIFVE 357
Query: 365 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQ 424
+CK PKA T+L+RG ++ ++ EV R + DA+ V I++ ++V GGG+TE+ +S L++
Sbjct: 358 ECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLRE 417
Query: 425 KSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNT 484
+ I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ T
Sbjct: 418 YAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFT 477
Query: 485 GAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 531
GA+ DM E + + VK Q ++A E+ MLLRIDD+++ K + A
Sbjct: 478 GAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA 524
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 353 bits (906), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 194/521 (37%), Positives = 325/521 (62%), Gaps = 11/521 (2%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 181 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVS-AQMPKKVTDAKIALLNCAIE 234
Query: 247 YKKGENQTNAELVKEEDWEVL--LKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYL 304
K E +T+AE+ + +++ ++ EE+ ++++ +I +++ +KG+ DLA HYL
Sbjct: 235 IK--ETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYL 292
Query: 305 SKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIV 364
+K G+ A RR++K+D ++AKA GA ++ L D+G AGL E +KI + F+
Sbjct: 293 AKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGD-AGLVEERKISGDSMIFVE 351
Query: 365 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQ 424
+CK PKA T+L+RG ++ ++ EV R + DA+ V I++ ++V GGG+TE+ +S L++
Sbjct: 352 ECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLRE 411
Query: 425 KSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNT 484
+ I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ T
Sbjct: 412 YAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFT 471
Query: 485 GAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525
GA+ DM E + + VK Q ++A E+ MLLRIDD+++
Sbjct: 472 GAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAA 512
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 343 bits (881), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 192/525 (36%), Positives = 317/525 (60%), Gaps = 29/525 (5%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 7 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 66
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 67 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 126
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 127 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 186
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 187 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVS-AQMPKKVTDAKIALLNCAIE 240
Query: 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSK 306
+T +E++K ++ +I +++ +KG+ DLA HYL+K
Sbjct: 241 ------ETASEMLK----------------DMVAEIKASGANVLFCQKGIDDLAQHYLAK 278
Query: 307 AGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDC 366
G+ A RR++K+D ++AKA GA ++ +L D+G AGL E +KI + F+ +C
Sbjct: 279 EGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKISGDSMIFVEEC 337
Query: 367 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKS 426
K PKA T+L+RG ++ ++ EV R + DA+ V I++ ++V GGG+TE+ +S L++ +
Sbjct: 338 KHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 397
Query: 427 SSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGA 486
I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ TGA
Sbjct: 398 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 457
Query: 487 ISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 531
+ DM E + + VK Q ++A E+ MLLRIDD+++ K + A
Sbjct: 458 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGA 502
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 343 bits (880), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/518 (36%), Positives = 314/518 (60%), Gaps = 29/518 (5%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 181 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVSA-QMPKKVTDAKIALLNCAIE 234
Query: 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSK 306
+T +E++K ++ +I +++ +KG+ DLA HYL+K
Sbjct: 235 ------ETASEMLK----------------DMVAEIKASGANVLFCQKGIDDLAQHYLAK 272
Query: 307 AGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDC 366
G+ A RR++K+D ++AKA GA ++ +L D+G AGL E +KI + F+ +C
Sbjct: 273 EGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKISGDSMIFVEEC 331
Query: 367 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKS 426
K PKA T+L+RG ++ ++ EV R + DA+ V I++ ++V GGG+TE+ +S L++ +
Sbjct: 332 KHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
Query: 427 SSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGA 486
I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ TGA
Sbjct: 392 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 451
Query: 487 ISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
+ DM E + + VK Q ++A E+ MLLRIDD+++
Sbjct: 452 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 489
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 341 bits (874), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 190/518 (36%), Positives = 313/518 (60%), Gaps = 29/518 (5%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 181 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVSA-QMPKKVTDAKIALLNCAIE 234
Query: 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSK 306
+T +E++K ++ +I +++ +KG+ DLA HYL+K
Sbjct: 235 ------ETASEMLK----------------DMVAEIKASGANVLFCQKGIDDLAQHYLAK 272
Query: 307 AGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDC 366
G+ A RR++K+D ++AKA GA ++ L D+G AGL E +KI + F+ +C
Sbjct: 273 EGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGD-AGLVEERKISGDSMIFVEEC 331
Query: 367 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKS 426
K PKA T+L+RG ++ ++ EV R + DA+ V I++ ++V GGG+TE+ +S L++ +
Sbjct: 332 KHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
Query: 427 SSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGA 486
I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ TGA
Sbjct: 392 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 451
Query: 487 ISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
+ DM E + + VK Q ++A E+ MLLRIDD+++
Sbjct: 452 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 489
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 340 bits (871), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 189/518 (36%), Positives = 313/518 (60%), Gaps = 29/518 (5%)
Query: 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILR 66
VL +++KR G NI A + +A+ +R+TLGP+ M KML+D G +VVTNDG ILR
Sbjct: 1 VLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILR 60
Query: 67 ELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNK 126
E+ V HPAAK +IE+++TQ++EVGDGTT+ +V+AGE+L AEE +D+N HPT++ + Y
Sbjct: 61 EMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQA 120
Query: 127 ALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLG 186
A + A +L IA + D+ + + + I K + + +A++ ++A + V D G
Sbjct: 121 AAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVSAVVDDEG 180
Query: 187 QGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246
+ VD K IK+EK G ++D+ ++KGV+ +K+ V+ +M +K+ + +I LL+ +E
Sbjct: 181 K----VD-KDLIKIEKKSGASIDDTELIKGVLVDKERVSA-QMPKKVTDAKIALLNCAIE 234
Query: 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSK 306
+T +E++K ++ +I +++ +KG+ DLA HYL+K
Sbjct: 235 ------ETASEMLK----------------DMVAEIKASGANVLFCQKGIDDLAQHYLAK 272
Query: 307 AGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDC 366
G+ A RR++K+D ++AKA GA ++ +L D+G AGL E +KI + F+ +C
Sbjct: 273 EGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKISGDSMIFVEEC 331
Query: 367 KDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKS 426
K PKA T+L+RG ++ ++ EV R + A+ V I++ ++V GGG+TE+ +S L++ +
Sbjct: 332 KHPKAVTMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
Query: 427 SSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGA 486
I G E+ A A A E IPRTLA+N G++ I + ++ HA+ N G++ TGA
Sbjct: 392 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 451
Query: 487 ISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
+ DM E + + VK Q ++A E+ MLLRIDD+++
Sbjct: 452 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIA 489
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 188/541 (34%), Positives = 317/541 (58%), Gaps = 8/541 (1%)
Query: 4 PVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNA 63
PV++LK+ R G + ANI A KAV + +++T GPR M KML+D+ G I +TNDG
Sbjct: 15 PVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGAT 74
Query: 64 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRA 123
IL ++D+ HPAAK ++++++ QDEE DGT + ++ +GE++ AE+ + K+ HPT+I
Sbjct: 75 ILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISG 134
Query: 124 YNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGV 183
Y KA E A+ + ++A + ND + + + + +K + + IAD+ + A T V
Sbjct: 135 YKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVA- 193
Query: 184 DLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243
+L VD+ I++ K GG + D++++ G++ +K+VV PG M +++ N +I L+D+
Sbjct: 194 ELRGDKWYVDLDN-IQIVKKAGGSINDTQLVYGIVVDKEVVHPG-MPKRLENAKIALIDA 251
Query: 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHY 303
LE +K E + + L EE I+ +IL +++I +KG+ ++A Y
Sbjct: 252 SLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSY 311
Query: 304 LSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFI 363
L+K GV A+RR +K+D ++A+A G +V+ DE+ E D+G A L E +K+G++ F+
Sbjct: 312 LAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGY-ASLIEERKVGEDKMVFV 370
Query: 364 VDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLK 423
K+PK+ ++L+RG + L++E ER L+DA+ ++IK+ + + GGGA E+ ++ L+
Sbjct: 371 EGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLR 430
Query: 424 QKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGN 483
+ + + G E+ EA A A E++ L +N G + I + L+ H N N W GID
Sbjct: 431 KYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLY 490
Query: 484 TGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK----KQAPGSGQTPS 539
G DM ++ + + VK K A EAA ++LRIDD+VS KK + PG PS
Sbjct: 491 AGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGESKTPGGANKPS 550
Query: 540 K 540
+
Sbjct: 551 E 551
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 321 bits (822), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 176/502 (35%), Positives = 298/502 (59%), Gaps = 5/502 (0%)
Query: 47 MLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHV 106
ML+D+ G IV+TNDG IL+E+D+ HPAAK ++E+S+TQD EVGDGTT+ VL+GE+L
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 107 AEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166
AEE I K H T+I Y A E +L+ I + I +D A ++ + + I K +
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGAEAY 120
Query: 167 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAP 226
+ ++ L + A ++ + GL+ V++ + IK+EK GG ++DS ++ G++ +K+ P
Sbjct: 121 KEKLSALTVKAVRSIVEEEEDGLK-VNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP 179
Query: 227 GKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFK 286
M K+ N +I+LL P+E++K E + ++ ++ L EE+ + + +++
Sbjct: 180 -NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASG 238
Query: 287 PDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTG 346
++V +KG+ D+A +Y+ KAG+ A+RR++K+D R++K GA I+ D++ DVGT
Sbjct: 239 ANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT- 297
Query: 347 AGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406
AGL E K++ ++ C++ KA TVLL G ++ +++ ++ L DA+ V +I++ K
Sbjct: 298 AGLVEEKEVRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGK 357
Query: 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTAL 466
+V GGG++E+ +S L + +S+++G E+ A A E IP LA+N G++ I M L
Sbjct: 358 VVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDPIDIMVEL 417
Query: 467 QGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV-SG 525
+ +H G N G++ TG + DM E + + +K Q A+EA M+LRIDD+V S
Sbjct: 418 RSQHEKG-NKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASK 476
Query: 526 IKKKQAPGSGQTPSKPQIETEA 547
Q G G P P ++ +A
Sbjct: 477 GSANQGMGPGGLPDMPDLDMDA 498
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 181/517 (35%), Positives = 297/517 (57%), Gaps = 10/517 (1%)
Query: 10 DSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELD 69
D R G + ++I A+KAVA+ ++T+LGP + KM++D G + VTNDG IL +D
Sbjct: 1 DRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMD 60
Query: 70 VAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALE 129
V H AK M+ELS++QD+E+GDGTT V+VLAG +L AE+ +D+ HP I Y +A
Sbjct: 61 VDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR 120
Query: 130 DAVAVLDKI--AMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQ 187
A+ LDKI ++ +D + ++ K+ +G+K + +A++A++A TV D+ +
Sbjct: 121 IAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVA-DMQR 179
Query: 188 GLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEY 247
R+VD + IKVE GG+LED++++KGV+ +KD P +M +++ + +I +L P E
Sbjct: 180 --RDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHP-QMPKQVEDAKIAILTCPFEP 235
Query: 248 KKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA 307
K + + ++ ED++ L K E+E E + QI + +L + + G D A H L +
Sbjct: 236 PKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQN 295
Query: 308 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG--DEFFAFIVD 365
+ A+R + + IA A G IV R EL +G AGL + G + I
Sbjct: 296 DLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVKEISFGTTKDKMLVIEQ 354
Query: 366 CKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQK 425
CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ + + Q+
Sbjct: 355 CKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQE 414
Query: 426 SSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTG 485
+ +E++ A A A E IP LA+N G+N I+TMT ++ + N +GID
Sbjct: 415 ADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHK 474
Query: 486 AISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDI 522
+DMK + + + K Q A + M+L+IDDI
Sbjct: 475 GTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDI 511
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 174/517 (33%), Positives = 286/517 (55%), Gaps = 12/517 (2%)
Query: 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP 73
R+ ++ +NI A+KAVAD IRT+LGP+ M KM+ D G + +TNDG IL+++ V HP
Sbjct: 6 RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP 65
Query: 74 AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA 133
AA+ ++ELS+ QD E GDGTTSV+++AG +L + + K HPT+I ++ KALE +
Sbjct: 66 AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 125
Query: 134 VLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVD 193
+L ++ P++ +DR T+L + + +K SQ+ L++ +++DA V +D VD
Sbjct: 126 ILTDMSRPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKV-IDPATA-TSVD 183
Query: 194 IKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253
++ IK+ K GG ++D +++G++ + V G R + +I L+ L K +
Sbjct: 184 LRD-IKIVKKLGGTIDDCELVEGLVLTQKVANSGITR--VEKAKIGLIQFCLSAPKTDMD 240
Query: 254 TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEK-----GLSDLACHYLSKAG 308
+ + +L+ E YI NL QI K ++++ +K LSDLA H+L+K
Sbjct: 241 NQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMK 300
Query: 309 VSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD 368
+ ++ + + D I K G V D+ +G+ EV G I C
Sbjct: 301 IMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCAS 360
Query: 369 P-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS 427
P K T+++RG++K ++ E ER++ DA+ V R ++K L+ GGGA E+ ++ L + S
Sbjct: 361 PGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSR 420
Query: 428 SIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAI 487
++ G+E + A A A E IP TLA+N G+N I T+T L+ +HA GE GI+ G I
Sbjct: 421 TLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTT-GINVRKGGI 479
Query: 488 SDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
S++ E + V A E +L+IDD+V+
Sbjct: 480 SNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 516
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 291 bits (744), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 172/507 (33%), Positives = 276/507 (54%), Gaps = 16/507 (3%)
Query: 23 ANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELS 82
+NI A + +A+ +RTTLGPR M K+++D G ++NDG IL+ LDV HPAAK++++++
Sbjct: 15 SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIA 74
Query: 83 RTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPI 142
++QD EVGDGTTSV +LA E L + ++++ HP +I RA+ A + AV + +IA+ +
Sbjct: 75 KSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV 134
Query: 143 DTNDRATMLGLVKSC----IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYI 198
D+ L++ C + +K SQ A + +DA + DL Q K I
Sbjct: 135 KKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLD-DLLQ-------LKMI 186
Query: 199 KVEKVPGGQLEDSRVLKGVMFNKDVVAPG-KMR-RKIVNPRIILLDSPLEYKKGENQTNA 256
++KV GG LE+S+++ GV F K G +M+ +K NP I LL+ LE K ++
Sbjct: 187 GIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEI 246
Query: 257 ELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316
+ ED++ ++ E + + +I +V+++ + D+A Y + + R+
Sbjct: 247 RVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVP 306
Query: 317 KTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLL 376
+ D R ACG I + L SDV +FE +IG E + F C K CT++L
Sbjct: 307 EEDLKRTMMACGGSIQTSVNAL-SSDVLGRCQVFEETQIGGERYNFFTGCPKAKTCTIIL 365
Query: 377 RGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWP 436
RG ++ + E ER+L DA+ + R IKN +V GGGA E+ +S L+ S +I G ++
Sbjct: 366 RGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLL 425
Query: 437 YEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIW 496
A A A E IPR L N G + + L+ +HA G W G+D NT I+D E +W
Sbjct: 426 IGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQG-GMWYGVDINTEDIADNFEAFVW 484
Query: 497 DAYNVKAQTFKTAIEAACMLLRIDDIV 523
+ V+ A EAAC+++ +D+ +
Sbjct: 485 EPAMVRINALTAASEAACLIVSVDETI 511
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 277 bits (708), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 170/544 (31%), Positives = 297/544 (54%), Gaps = 19/544 (3%)
Query: 5 VLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAI 64
++VLK+ G +NI A AV + ++ TLGP +++ ++ ++NDG I
Sbjct: 10 IVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATI 69
Query: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAY 124
L+ LDV HPAAK+++++SR QD EVGDGTTSV +LAGE++ A+ F+++ +I + Y
Sbjct: 70 LKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGY 129
Query: 125 NKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF----GDLIADLAIDATTT 180
KA+ AV ++++A+ I T+++++ L++ C T +S+ D + +DA +
Sbjct: 130 RKAVSLAVEKINELAVDI-TSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLS 188
Query: 181 VGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRI 238
+ + ++D K I ++K+PGG +E+S + GV F K G + +K NP+I
Sbjct: 189 LDRN------DLD-DKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKI 241
Query: 239 ILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSD 298
+ L+ LE K ++ + ED++ ++ E + I Q+ + ++V+++ + D
Sbjct: 242 LSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGD 301
Query: 299 LACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDE 358
LA + + + R+ D NR+ +A G I + +++ +GT A LFE +IG E
Sbjct: 302 LATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCA-LFEEMQIGSE 360
Query: 359 FFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTV 418
+ C K CT+LLRG ++ ++ EVER+L DA+ + + ++N +V GGGATE+ V
Sbjct: 361 RYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEV 420
Query: 419 SATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWI 478
S L+ S +I G ++ A A A E IPR L +N G + I + L+ H+ GE W
Sbjct: 421 SKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEK-WY 479
Query: 479 GIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQTP 538
G+ T I D + +W+ VK +A EA ++L +D+ ++ K ++ +G P
Sbjct: 480 GVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN-KGSESANAGMMP 538
Query: 539 SKPQ 542
PQ
Sbjct: 539 --PQ 540
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 123/173 (71%), Positives = 148/173 (85%), Gaps = 1/173 (0%)
Query: 208 LEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVL 267
+EDS VL+GVM NKDV P +MRR I NPRI+LLDS LEYKKGE+QT+ E+ +EED+ +
Sbjct: 1 MEDSCVLRGVMINKDVTHP-RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 59
Query: 268 LKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKAC 327
L+MEEEYI LC I++ KPD+VITEKG+SDLA HYL +A V+AIRR+RKTDNNRIA+AC
Sbjct: 60 LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 119
Query: 328 GAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGAS 380
GA IV+RP+EL+E DVGTGAGL E+KKIGDE+F FI DCKDPKACT+LLRGAS
Sbjct: 120 GARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGAS 172
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 167/538 (31%), Positives = 301/538 (55%), Gaps = 22/538 (4%)
Query: 1 MHSPVLVLKD--SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVT 58
M P +++KD + KR+ G + ++I A+++VA II+T+LGPR + K+L+ G I +T
Sbjct: 25 MGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITIT 84
Query: 59 NDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPT 118
NDG IL ++++ + AK +++LS++QD+E+GDGTT V+VLA +L A E I K HP
Sbjct: 85 NDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPI 144
Query: 119 VICRAYNKALEDAVAVL----DKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLA 174
I +++A + A++ L D I+ D R +L K+ +G+K S+ D A++A
Sbjct: 145 KIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMA 204
Query: 175 IDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIV 234
++A V + + ++VD IK++ GG + DS+++ GV+ +KD P K V
Sbjct: 205 VEAVINV---MDKDRKDVDF-DLIKMQGRVGGSISDSKLINGVILDKDFSHP--QMPKCV 258
Query: 235 NP-------RIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKP 287
P ++ +L P E K + + ++ E+++ L E++ + + + K
Sbjct: 259 LPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGA 318
Query: 288 DLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGA 347
D+VI + G D A H L + + A+R + + IA + IV R +L + +GT +
Sbjct: 319 DVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCS 378
Query: 348 GLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405
++E ++ G + I K+ K T +RG++K +++E ER L D++ V RN++K+
Sbjct: 379 RIYE-QEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDS 437
Query: 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTA 465
++V GGGA E+T+S + +++ GI+++ + A A + IP TLA+N G++ I T++
Sbjct: 438 RVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLST 497
Query: 466 LQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 523
L+ K + + IG+D +DMKE + D + K Q A + M+L+ID+++
Sbjct: 498 LKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/514 (28%), Positives = 279/514 (54%), Gaps = 28/514 (5%)
Query: 24 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSR 83
NI A++ + D++RT LGP+ +KML+ +G I +T DGN +L E+ + HP A + +++
Sbjct: 15 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 74
Query: 84 TQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPID 143
QD+ GDGTTS +++ GE+L A+ +I + HP +I + A E A+ L+++ + +
Sbjct: 75 AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKE 134
Query: 144 TNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVG-----VDLGQGLREVDIKKYI 198
DR T++ + ++ + TK ++ D++ + +D+ + +DL +
Sbjct: 135 M-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQDEPIDLF----------MV 183
Query: 199 KVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAEL 258
++ ++ D+ +++G++ + P M++++ + I+ + LEY+K E +
Sbjct: 184 EIMEMKHKSETDTSLIRGLVLDHGARHP-DMKKRVEDAYILTCNVSLEYEKTEVNSGFFY 242
Query: 259 VKEEDWEVLLKMEEEYIENLCMQILKFKPD---------LVITEKGLSDLACHYLSKAGV 309
E+ E L+K E ++IE+ +I++ K +VI +KG+ + L+K G+
Sbjct: 243 KSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGI 302
Query: 310 SAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP 369
A+RR ++ + R+ ACG + +N D+L + AG++E +G+E F FI C +P
Sbjct: 303 IALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEY-TLGEEKFTFIEKCNNP 361
Query: 370 KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSI 429
++ T+L++G +K L +++ ++D + +N I + +VPG GA E+ ++ L + S+
Sbjct: 362 RSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSV 421
Query: 430 EGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISD 489
+G + +A A A IP+ LAQN G ++ T+ +Q +H+ +G+D NTG
Sbjct: 422 KGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSES-GQLVGVDLNTGEPMV 480
Query: 490 MKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 523
E IWD Y VK Q + A +L +D+I+
Sbjct: 481 AAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 514
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 248 bits (634), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 162/523 (30%), Positives = 276/523 (52%), Gaps = 15/523 (2%)
Query: 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP 73
R +G + N+ A+ ++A+I++++LGP + KML+D G + +TNDG IL+ L+V HP
Sbjct: 5 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 64
Query: 74 AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA 133
AAK + EL+ QD+EVGDGTTSV+++A E+L A+E + + HPT + Y A ++AV
Sbjct: 65 AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 124
Query: 134 VL-DKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREV 192
+ + + + D R ++ K+ + +K GD A+L +DA + +G
Sbjct: 125 YISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRY 184
Query: 193 DIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252
+ I V K G +S ++ G N VV M ++IVN +I LD L+ K +
Sbjct: 185 PVNS-INVLKAHGRSQMESMLINGYALNC-VVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242
Query: 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAI 312
+ E + + + E + + +IL ++++T G+ D+ Y +AG A+
Sbjct: 243 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAV 302
Query: 313 RRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEV-----KKIGDEFFAFIVDCK 367
RR+ K D RIAKA GA +++ L+ + + L + ++I D+ I + K
Sbjct: 303 RRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTK 362
Query: 368 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS 427
+ +V+LRGA+ + +E+ER+L DA+ V + ++++ +VPGGGA E +S L+ ++
Sbjct: 363 ARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYAT 422
Query: 428 SIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKH----ANGEN---AWIGI 480
S+ E+ A + IP TLA N + + L+ H N E WIG+
Sbjct: 423 SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 482
Query: 481 DGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 523
D G D K+ +++ VK ++ K A EAA +LRIDD++
Sbjct: 483 DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 525
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 158/518 (30%), Positives = 284/518 (54%), Gaps = 16/518 (3%)
Query: 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP 73
+E +V ANI A+++VAD IRT+LGP+ M KM+ + G I+++NDG+ IL+++ + HP
Sbjct: 14 KEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHP 73
Query: 74 AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVA 133
A+ ++E+S QD E GDGTTSV++L G +L AE ++K HPT+I ++ A + +V
Sbjct: 74 VARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVD 133
Query: 134 VLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVD 193
+L ++ + +DR ++ + + +K SQ+ +A LA+D+ + + + VD
Sbjct: 134 ILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKIS---DENSKNVD 190
Query: 194 IKKYIKVEKVPGGQLEDSRVLKGVMFNKDVV--APGKMRRKIVNPRIILLDSPLEYKKGE 251
+ V+KV GG ++D+ ++ GV+ + + A G R++ +I L+ + K +
Sbjct: 191 LNDIRLVKKV-GGTIDDTEMIDGVVLTQTAIKSAGGPTRKE--KAKIGLIQFQISPPKPD 247
Query: 252 NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGL-----SDLACHYLSK 306
+ N + + +LK E Y+ N+C +I K K ++++ +K + +DLA H+LSK
Sbjct: 248 TENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSK 307
Query: 307 AGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAF--IV 364
+ ++ + + + ++K G + + E + + + E+ G + I
Sbjct: 308 LNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIR 367
Query: 365 DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQ 424
+ +V++RGA+ +++E ER+L DA+ V R ++K L+ GGGA E+ +S L +
Sbjct: 368 NNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSK 427
Query: 425 KSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNT 484
++ S+EG++ + ++ A A E IP TLA+N G+N I+ +T L+ KH NGE GI
Sbjct: 428 EARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGE-LNDGISVRR 486
Query: 485 GAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDI 522
++ E I V A E +LRIDDI
Sbjct: 487 SGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 524
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/528 (29%), Positives = 267/528 (50%), Gaps = 21/528 (3%)
Query: 16 SGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAA 75
SG + + N+ A+ AVA++++++LGP + KML+D G VTNDG IL LDV HPA
Sbjct: 21 SGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAG 80
Query: 76 KSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL 135
K ++EL++ QD E+GDGTTSV+++A E+L A E + HPT I + AL +A+ +
Sbjct: 81 KILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFI 140
Query: 136 DKI-AMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDI 194
+++ + +DT + T++ + K+ + +K D +++ +DA V +G + +
Sbjct: 141 NEVLSTSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPV 200
Query: 195 KKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIV--NPRIILLDSPLEYKKGEN 252
K + V K G +S ++ G N VA M ++I N +I LD L+ +
Sbjct: 201 KA-VNVLKAHGKSATESLLVPGYALNC-TVASQAMPKRIAGGNVKIACLDLNLQKARMAM 258
Query: 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAI 312
+ E E + K E + +I+ +V+T KG+ DL +A + +
Sbjct: 259 GVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGV 318
Query: 313 RRLRKTDNNRIAKACGAVIVNRPDEL--QESDVGTGAGLFE---VKKIGDEFFAFIVDCK 367
RR +K D RIA+A GA +V+ L +E+ + GL + K D+ I
Sbjct: 319 RRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTS 378
Query: 368 DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS 427
+ +++LRGA+ L+E+ER+L D++SV + +++ +VPGGG E ++ L ++
Sbjct: 379 KHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFAT 438
Query: 428 SIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAW---------- 477
++ E+ A A IP+TLA N + + L+ HA + A
Sbjct: 439 TVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYR 498
Query: 478 -IGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
G+D G I D + + K ++ K+A+EA +LRID +++
Sbjct: 499 NYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMIT 546
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 162/526 (30%), Positives = 277/526 (52%), Gaps = 20/526 (3%)
Query: 5 VLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGI-VVTNDGNA 63
V + D + E + + AV D++++TLGP+ M K+L AS +VTNDG
Sbjct: 3 VQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGAT 62
Query: 64 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKN-YHPTVICR 122
IL+ + + +PAAK ++ +S+ QD+EVGDGTTSV VL+ E+L AE+ ID++ HP I
Sbjct: 63 ILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIE 122
Query: 123 AYNKALEDAVAVLDKIAMPIDTND----RATMLGLVKSCIGTKFTSQFGDLIADLAIDAT 178
Y A A+ L K A+ +++D R ++ + K+ + +K SQ D A+LA +A
Sbjct: 123 GYRLASAAALDALTKAAVD-NSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAI 181
Query: 179 TTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRI 238
+ +G ++ +I++ K+ GG+L DS + +G + K ++I N +I
Sbjct: 182 LRL-----KGSTNLE---HIQIIKILGGKLSDSFLDEGFILAKKF--GNNQPKRIENAKI 231
Query: 239 ILLDSPLEYKKGE-NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLS 297
++ ++ L+ K + T ++ L K E E ++N +I KF + I + +
Sbjct: 232 LIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIY 291
Query: 298 DLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 357
D + G+++I R+A G +V+ DE + +G + E+ +G+
Sbjct: 292 DYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIM-LGE 350
Query: 358 EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELT 417
+ F CK +ACT++LRGA+ L+E ER+L DA+SV K + V GGG E+
Sbjct: 351 QPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMV 410
Query: 418 VSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAW 477
+S + ++ +I+G + EA A A +P LA N G + ++ L+ NG +
Sbjct: 411 MSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTS 470
Query: 478 IGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 523
G+D N G I+DM++ I ++Y +K +A EAA +LLR+D+I+
Sbjct: 471 -GLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNII 515
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/543 (28%), Positives = 276/543 (50%), Gaps = 42/543 (7%)
Query: 24 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSR 83
+I A + + + T++GP K++++ G I++TND +LRELD+ HPA K ++ +
Sbjct: 31 SIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATE 90
Query: 84 TQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMP-- 141
Q ++GDGT V++LAGE+L+V+E+ I I + YN A + + LD++ +
Sbjct: 91 QQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEI 150
Query: 142 IDTNDRATMLGLVKSCIGTKFTSQFG--DLIADLAIDATTTVGVDLGQGLREVDIKKY-- 197
D ND+ +L ++K I +K ++G D++++L +A + V + + Q E+
Sbjct: 151 TDKNDKNELLKMIKPVISSK---KYGSEDILSELVSEAVSHV-LPVAQQAGEIPYFNVDS 206
Query: 198 IKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAE 257
I+V K+ GG L +S V+KG++FN++ K + ++ + PL+ E +
Sbjct: 207 IRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVL 266
Query: 258 LVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 317
L ++ K EE+ I+ + +I + ++ G+ +LA HYL++ G+ ++ K
Sbjct: 267 LHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGILVLKVPSK 326
Query: 318 TDNNRIAKACGAVIVNR-----PDELQESDVGTGAGLFEVKKI----GDEFFAFIVDCKD 368
+ R+ + CGA + R P+EL GL E K GD F + +
Sbjct: 327 FELRRLCRVCGATPLPRLGAPTPEEL---------GLVETVKTMEIGGDRVTVFKQEQGE 377
Query: 369 -PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK--NPKLVPGGGATELTVSATLKQK 425
+ T++LRGA+++ L+++ER + D ++ + ++K KL+PG GATE+ + + + +
Sbjct: 378 ISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKY 437
Query: 426 SSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENA--------- 476
G+ + + A+AFE +PRTLA+ G++V + L H E
Sbjct: 438 GERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYK 497
Query: 477 WIGIDGNTG-AISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSG 535
+ IDG + + D++E I+D K A EAA +L ID I+ KK P +
Sbjct: 498 GVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMA-KKAGGPRAP 556
Query: 536 QTP 538
Q P
Sbjct: 557 QGP 559
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 208 bits (529), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 140/533 (26%), Positives = 273/533 (51%), Gaps = 28/533 (5%)
Query: 10 DSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELD 69
+SL+R++ KV N+ +++ + ++ T LGP+ LKML+D +G I +T DG +L E+
Sbjct: 11 ESLRRDAALKV---NVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQ 67
Query: 70 VAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALE 129
+ P A + + QDE GDGTT+V+ L GE+L A FI + HP +I + A +
Sbjct: 68 IQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARK 127
Query: 130 DAVAVLD--KIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQ 187
+++ LD KI+ +NDR +L + +S + TK + +++ + DA +V D
Sbjct: 128 ESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSV-YDAQA 186
Query: 188 GLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEY 247
++ + + ++++ + +D+ +KG++ + P M ++ N +++L+ LEY
Sbjct: 187 DNLDLHMVEIMQMQHLSP---KDTTFIKGLVLDHGGRHP-DMPTRVKNAYVLILNVSLEY 242
Query: 248 KKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFK-------PD---LVITEKGLS 297
+K E + + + L E ++++ +I+ K PD ++I +KG+
Sbjct: 243 EKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGID 302
Query: 298 DLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD 357
++ +K + A+RR ++ + R+ G N ++L +G +GL + IG+
Sbjct: 303 PMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGF-SGLVYQETIGE 361
Query: 358 EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELT 417
E F ++ + DPK+CT+L++G++ L + + ++D + N++K+ ++PG GA +
Sbjct: 362 EKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIA 421
Query: 418 VSATLKQKSSS---IEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGK----H 470
+S L+ + + +G K EA A A IP+TL +N G + + + ++ +
Sbjct: 422 LSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQ 481
Query: 471 ANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 523
+ E ++G+D N G D IWD+Y V A A LL D+++
Sbjct: 482 DSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 152/511 (29%), Positives = 258/511 (50%), Gaps = 27/511 (5%)
Query: 30 AVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDE 87
A+ D++++TLGP+ M K+LL + ++VTNDG IL+ + V +PAAK ++++SR QD+
Sbjct: 21 AIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDD 80
Query: 88 EVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND- 146
EVGDGTTSV VLA E+L AE I K HP I + +A + A L A+ +++
Sbjct: 81 EVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEV 140
Query: 147 --RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVP 204
R ++ + + + +K + D LA++A + G G E I V K
Sbjct: 141 KFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLK---GSGNLEA-----IHVIKKL 192
Query: 205 GGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDW 264
GG L DS + +G + +K + ++I N +I++ ++ ++ K + V+ +
Sbjct: 193 GGSLADSYLDEGFLLDKKIGV--NQPKRIENAKILIANTGMDTDK--IKIFGSRVRVDST 248
Query: 265 EVLLKMEE---EYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNN 321
+ ++E E ++ +ILK + I + + + AGV AI
Sbjct: 249 AKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVE 308
Query: 322 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASK 381
R+A G I + D + +G+ L E IG++ +ACT++LRGA++
Sbjct: 309 RLALVTGGEIASTFDHPELVKLGS-CKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQ 367
Query: 382 DLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAA 441
+L+E ER+L DA+ V +K+ + V GGG +E+ ++ + Q +S G E E+ A
Sbjct: 368 QILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYA 427
Query: 442 IAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNV 501
A +P +A N G + + L+ H+ G+ G+D G I DM I +++ V
Sbjct: 428 KALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTA-GLDMKEGTIGDMSVLGITESFQV 486
Query: 502 KAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 532
K Q +A EAA ++LR+D+I+ K AP
Sbjct: 487 KRQVLLSAAEAAEVILRVDNII-----KAAP 512
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 194 bits (494), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 153/507 (30%), Positives = 257/507 (50%), Gaps = 16/507 (3%)
Query: 22 HANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIEL 81
+ NIQA K +A RT GP M KM+++ + VTND ILREL+V HPAAK ++
Sbjct: 14 YRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMA 73
Query: 82 SRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMP 141
S Q++EVGDGT V+V AG +L +AEE + + + Y A + A +L +
Sbjct: 74 SHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCC 133
Query: 142 IDTNDRATMLGLVKSCIGTKFTS-QFGD--LIADLAIDATTTVGVDLGQGLREVDIKKYI 198
N R + V S + T S Q+G+ +A L A ++ D G VD I
Sbjct: 134 SAKNLRD--VDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFPDSGH--FNVD---NI 186
Query: 199 KVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAEL 258
+V K+ G + S VL G++F K+ G + + + +I + P + E + +
Sbjct: 187 RVCKILGSGVHSSSVLHGMVFKKE--TEGDV-TSVKDAKIAVYSCPFDGMITETKGTVLI 243
Query: 259 VKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318
E+ K EE ++ I ++V+T ++D+A HY +K + +R K
Sbjct: 244 KSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKW 303
Query: 319 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLR 377
D R+ K GA + R + ++G ++ + ++GD + F + +D T++LR
Sbjct: 304 DLRRLCKTVGATALPRLNPPVLEEMGHCDSVY-LSEVGDTQVVVFKHEKEDGAISTIVLR 362
Query: 378 GASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPY 437
G++ +L++++ER + D ++ + + ++ +LVPGGGATE+ ++ + + G+E++
Sbjct: 363 GSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAI 422
Query: 438 EAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKERKIW 496
+ A AFEAIPR LA+N G+ ++ L H G +N + I+ A+ DM E +
Sbjct: 423 KKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVL 482
Query: 497 DAYNVKAQTFKTAIEAACMLLRIDDIV 523
D Y K K A AA +LR+D I+
Sbjct: 483 DTYLGKYWAIKLATNAAVTVLRVDQII 509
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Query: 214 LKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 273
+ G++ +K+ V PG M + + +I LLD+PLE KK E TN + + L EE
Sbjct: 1 MNGIIVDKEKVHPG-MPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEEN 59
Query: 274 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 333
+ + +I ++VIT+KG+ D+A HYLS+AG+ A+RR++K+D +++AKA GA IV+
Sbjct: 60 MLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVS 119
Query: 334 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD 368
DE+ SD+GT + +V K+G+++ F+ K+
Sbjct: 120 TIDEISSSDLGTAERVEQV-KVGEDYMTFVTGSKN 153
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 214 LKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEE 273
+ G++ +K+ V KM + N +I L+DS LE KK E + ++ + L E
Sbjct: 1 MSGIVIDKEKV-HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETN 59
Query: 274 YIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 333
+ + +I K ++V+ +KG+ D+A HYL+K G+ A+RR++K+D ++AKA GA IV
Sbjct: 60 TFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVT 119
Query: 334 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD 368
D+L S +G A E +KIGD+ F++ CK+
Sbjct: 120 DLDDLTPSVLGE-AETVEERKIGDDRMTFVMGCKN 153
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 122/537 (22%), Positives = 216/537 (40%), Gaps = 80/537 (14%)
Query: 30 AVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQ 85
A+AD ++ TLGP+ +L G +TNDG +I +E+++ P A+ + E+++
Sbjct: 21 ALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKT 80
Query: 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN 145
D+ GDGTT+ VLA ++ + +P + R KA+E L K A ++T
Sbjct: 81 DDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETK 140
Query: 146 DRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK--V 203
++ + + GDLIA+ A+D GV I VE+
Sbjct: 141 EQIAATAAISAG-----DQSIGDLIAE-AMDKVGNEGV--------------ITVEESNT 180
Query: 204 PGGQLEDS---RVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP----------LEYKKG 250
G QLE + R KG + V P + + +P I+L+ S LE G
Sbjct: 181 FGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIG 240
Query: 251 ENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKP-----------DLVITEKG--LS 297
+ + ++ + E L + I + P D+ I G +S
Sbjct: 241 AGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVIS 300
Query: 298 DLACHYLSKAGVSAIRRLRKT----DNNRIAKACGAV--IVNRPDELQESDVGTGAGLFE 351
+ L A +S + + RK D I + G I R ++++ ++ ++
Sbjct: 301 EEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQ-EIENSDSDYD 359
Query: 352 VKKIGDEFFAFIVDCKDPKACTVLLRGASKDL-LNEVERNLQDAMSVARNIIKNPKLVPG 410
+K+ + K V+ GA+ ++ L E + ++DA+ A+ ++ +V G
Sbjct: 360 REKLQERL------AKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEE-GIVAG 412
Query: 411 GGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGIN---VIRTMTALQ 467
GG T L + TL + +EG E +A EA + +A N G+ V + L
Sbjct: 413 GGVTLLQAAPTLDE--LKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLP 470
Query: 468 GKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
H G++ TG D+ + D V + A A + L + +V+
Sbjct: 471 AGH--------GLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVA 519
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP----- 137
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 138 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 183
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 184 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 227
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 99/200 (49%), Gaps = 24/200 (12%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP----- 137
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 138 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 183
Query: 207 QLEDSRVLKGVMFNKDVVAP 226
Q ++ V++G+ F++ ++P
Sbjct: 184 Q-DELDVVEGMQFDRGYLSP 202
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 99/200 (49%), Gaps = 24/200 (12%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAP 226
Q ++ V++G+ F++ ++P
Sbjct: 183 Q-DELDVVEGMQFDRGYLSP 201
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 99/200 (49%), Gaps = 24/200 (12%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAP 226
Q ++ V++G+ F++ ++P
Sbjct: 183 Q-DELDVVEGMQFDRGYLSP 201
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 82
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 83 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP----- 137
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 138 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 183
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 184 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 227
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ +L + G +T DG ++ RE+++ + A+ + E++ +
Sbjct: 22 LADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAN 81
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+ GDGTT+ VLA ++ + + +P + R +KA+ AV L +++P
Sbjct: 82 DAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP----- 136
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
C +K +Q G + A ++ TVG + + + +V + I VE G
Sbjct: 137 ----------CSDSKAIAQVGTISA----NSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182
Query: 207 QLEDSRVLKGVMFNKDVVAPGKMRR------KIVNPRIILLDSPL 245
Q ++ V++G+ F++ ++P + + ++ +P I+L D +
Sbjct: 183 Q-DELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKI 226
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 30 AVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQ 85
AVA+ ++ TLGPR +L G +T DG + +E+++ + A+ + E++
Sbjct: 21 AVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKT 80
Query: 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPID 143
++ GDGTT+ VLA ++ + + +P + R KA+E AV + +A+P++
Sbjct: 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVE 138
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 379 ASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYE 438
A++ L E + +DA++ R ++ +VPGGG T L + +++ +EG E +
Sbjct: 382 ATETELKEKKHRFEDALNATRAAVEE-GIVPGGGVTLLRAISAVEELIKKLEGDEATGAK 440
Query: 439 AAAIAFEAIPRTLAQNCGI--NVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIW 496
A E R +A+N G +VI +Q A +N G + TG DM E I
Sbjct: 441 IVRRALEEPARQIAENAGYEGSVI-----VQQILAETKNPRYGFNAATGEFVDMVEAGIV 495
Query: 497 DAYNVKAQTFKTAIEAACMLLRIDDIVSGI--KKKQAPGS 534
D V + A ++L + +V+ KK+ P S
Sbjct: 496 DPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPAS 535
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/514 (22%), Positives = 203/514 (39%), Gaps = 80/514 (15%)
Query: 53 GGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAE 108
G +TNDG +I +E+++ P A+ + E+++ D+ GDGTT+ VLA ++
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 109 EFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168
+ +P + R KA+E L K A ++T ++ + + GD
Sbjct: 62 RNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAG-----DQSIGD 116
Query: 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEK--VPGGQLEDS---RVLKGVMFNKDV 223
LIA+ A+D GV I VE+ G QLE + R KG + V
Sbjct: 117 LIAE-AMDKVGNEGV--------------ITVEESNTFGLQLELTEGMRFDKGYISGYFV 161
Query: 224 VAPGKMRRKIVNPRIILLDSP----------LEYKKGENQTNAELVKEEDWEVLLKMEEE 273
P + + +P I+L+ S LE G + + ++ + E L +
Sbjct: 162 TDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVN 221
Query: 274 YIENLCMQILKFKP-----------DLVITEKG--LSDLACHYLSKAGVSAIRRLRKT-- 318
I + P D+ I G +S+ L A +S + + RK
Sbjct: 222 KIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVVV 281
Query: 319 --DNNRIAKACGAV--IVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTV 374
D I + G I R ++++ ++ ++ +K+ + K V
Sbjct: 282 TKDETTIVEGAGDTDAIAGRVAQIRQ-EIENSDSDYDREKLQERL------AKLAGGVAV 334
Query: 375 LLRGASKDL-LNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIE 433
+ GA+ ++ L E + ++DA+ A+ ++ +V GGG T L + TL + +EG E
Sbjct: 335 IKAGAATEVELKERKHRIEDAVRNAKAAVEE-GIVAGGGVTLLQAAPTLDE--LKLEGDE 391
Query: 434 KWPYEAAAIAFEAIPRTLAQNCGIN---VIRTMTALQGKHANGENAWIGIDGNTGAISDM 490
+A EA + +A N G+ V + L H G++ TG D+
Sbjct: 392 ATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGH--------GLNAQTGVYEDL 443
Query: 491 KERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524
+ D V + A A + L + +V+
Sbjct: 444 LAAGVADPVKVTRSALQNAASIAGLFLTTEAVVA 477
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 94/200 (47%), Gaps = 24/200 (12%)
Query: 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQD 86
+AD ++ TLGP+ ++ + G +T DG ++ +E++++ + A+ + E++ +
Sbjct: 23 LADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTN 82
Query: 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND 146
+E GDGTT+ VLA ++ + + +P + R + A V + A P++ +
Sbjct: 83 DEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARPVNDSS 142
Query: 147 RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGG 206
+G + S G F +G + + ++ V + I VE+ G
Sbjct: 143 EVAQVGTI-SANGESF------------------IGQQIAEAMQRVGNEGVITVEENKGM 183
Query: 207 QLEDSRVLKGVMFNKDVVAP 226
+ E V++G+ F++ ++P
Sbjct: 184 ETE-VEVVEGMQFDRGYLSP 202
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 158 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-----SR 212
+G + +GD + T G +L + REV ++K IK+ K PG +L D
Sbjct: 108 VGAVYQGLYGDAAVTYIVGETDERGKELVRVTREV-LEKAIKMIK-PGIRLGDVSHCIQE 165
Query: 213 VLKGVMFN--KDVVAPGKMRRKIVNPRIILLDSP---LEYKKGENQTNAELVKEEDWEVL 267
++ V FN +D V G R +P+I +P + +KG +V E DW V+
Sbjct: 166 TVESVGFNVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVV 225
Query: 268 LK 269
+K
Sbjct: 226 VK 227
>pdb|1SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With Dana
pdb|1SLL|A Chain A, Sialidase L From Leech Macrobdella Decora
pdb|2SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac, The Reaction Product
pdb|3SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac Prepared By Soaking With 3'-Sialyllactose
pdb|4SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2-
Propenyl-Neu5ac, An Inactive Substrate Analogue
Length = 679
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKV--EKVPGGQLEDSRVLKGVMFNKDVVAP 226
L ADL + +G G +EV+ KKY+K+ K G + + KGV++N P
Sbjct: 309 LFADLMPAGIGSSNASVGSGFKEVNGKKYLKLRWHKDAGRAYDYTIREKGVIYNDATNQP 368
Query: 227 GKMR 230
+ R
Sbjct: 369 TEFR 372
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 392 QDAMSVA---RNIIKNPKLVPGGGATELTVSATL---KQKSSSIEGIEKWPYEAAAIAFE 445
++A+ VA R+I+ K G G T V TL K K + I+ + P A+
Sbjct: 49 EEAIPVAITGRDILARAK--NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 106
Query: 446 AIPRTLAQNCGINVIRTM--TALQGKHANGENAWIGIDGNTGAISDMKERKIWD------ 497
+ RTL ++CGI+ + T T L+ + G G + D+ RK+ D
Sbjct: 107 QVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 166
Query: 498 -----AYNVKAQTFKTAIEAACMLL 517
A + ++ FKT IE L
Sbjct: 167 FIMDEADKMLSRDFKTIIEQILSFL 191
>pdb|1A87|A Chain A, Colicin N
Length = 321
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 105 HVAEEFID--KNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKF 162
+VA+E + KN+H I R+YN+A+ VL M ++ +D+ ++ K
Sbjct: 154 NVAKEVANDIKNFHGRNI-RSYNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDM 212
Query: 163 TSQFGDL-----IADLAI 175
++ G+L +ADLAI
Sbjct: 213 ANKIGNLGKAFKVADLAI 230
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 349 LFEVKKIGDEFFAFIVDCKDPKAC-TVLLRGASKDLLNEVERNLQDAMS 396
L EV +GD F FI +CK + C T L++ A K RN++D ++
Sbjct: 17 LKEVFALGDRFKNFISNCKTERECVTELIKTAEKSGY----RNIEDILA 61
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP 73
RE+G ++ H I+ S R + ++ LLD G +D +REL AHP
Sbjct: 292 REAGEEIEHEGIRRS-------RMKMAEADLILYLLDL--GTERLDDELTEIRELKAAHP 342
Query: 74 AAKSM 78
AAK +
Sbjct: 343 AAKFL 347
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXV|B Chain B, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
pdb|1RXW|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna
Length = 336
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 175 IDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIV 234
ID VG D +G++ V +KK + K G R LK + N D V ++R +
Sbjct: 226 IDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIF---RALKALKVNIDHVE--EIRNFFL 280
Query: 235 NPRIILLDSPLEYKKGENQTNAELVKEE 262
NP + D +E+++ + + E + EE
Sbjct: 281 NPPVT-DDYRIEFREPDFEKAIEFLCEE 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,285,216
Number of Sequences: 62578
Number of extensions: 674458
Number of successful extensions: 1958
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1756
Number of HSP's gapped (non-prelim): 73
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)