Query 008704
Match_columns 557
No_of_seqs 427 out of 1541
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 15:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 99.8 1E-19 2.2E-24 188.7 10.4 215 160-401 23-317 (320)
2 PRK11493 sseA 3-mercaptopyruva 99.8 1.1E-19 2.3E-24 184.8 10.0 215 160-402 6-280 (281)
3 cd01533 4RHOD_Repeat_2 Member 99.8 2.2E-19 4.8E-24 157.1 10.3 99 270-396 10-109 (109)
4 COG2897 SseA Rhodanese-related 99.8 2.4E-19 5.2E-24 183.6 10.0 215 159-402 11-283 (285)
5 cd01518 RHOD_YceA Member of th 99.8 1.3E-18 2.8E-23 150.0 9.9 98 271-393 3-100 (101)
6 cd01527 RHOD_YgaP Member of th 99.8 1.6E-18 3.4E-23 148.6 9.8 97 271-399 3-99 (99)
7 PRK09629 bifunctional thiosulf 99.8 1.4E-18 2.9E-23 194.4 10.4 216 160-402 10-272 (610)
8 cd01534 4RHOD_Repeat_3 Member 99.8 2.2E-18 4.8E-23 147.2 9.3 94 272-394 1-95 (95)
9 PRK00162 glpE thiosulfate sulf 99.8 3.1E-18 6.8E-23 149.5 9.6 101 270-401 5-105 (108)
10 PLN02160 thiosulfate sulfurtra 99.7 4E-18 8.6E-23 156.8 10.2 114 270-403 15-130 (136)
11 cd01523 RHOD_Lact_B Member of 99.7 4.6E-18 1E-22 146.1 9.9 99 272-393 1-99 (100)
12 cd01448 TST_Repeat_1 Thiosulfa 99.7 3.6E-18 7.7E-23 151.6 9.3 110 272-396 2-122 (122)
13 cd01519 RHOD_HSP67B2 Member of 99.7 2.6E-18 5.7E-23 148.1 7.8 105 273-394 2-106 (106)
14 cd01521 RHOD_PspE2 Member of t 99.7 1.2E-17 2.7E-22 146.6 10.7 101 269-399 7-110 (110)
15 cd01449 TST_Repeat_2 Thiosulfa 99.7 4.3E-18 9.2E-23 149.8 7.7 107 272-394 1-118 (118)
16 cd01526 RHOD_ThiF Member of th 99.7 1.5E-17 3.2E-22 148.9 8.7 112 268-399 6-118 (122)
17 cd01444 GlpE_ST GlpE sulfurtra 99.7 2.3E-17 5.1E-22 139.6 9.0 93 271-393 1-95 (96)
18 TIGR03865 PQQ_CXXCW PQQ-depend 99.7 2.8E-17 6.2E-22 155.5 10.5 110 270-399 36-162 (162)
19 cd01525 RHOD_Kc Member of the 99.7 3.1E-17 6.8E-22 141.5 9.4 101 272-393 1-104 (105)
20 cd01520 RHOD_YbbB Member of th 99.7 6E-17 1.3E-21 146.4 11.0 105 272-394 1-126 (128)
21 cd01528 RHOD_2 Member of the R 99.7 5.3E-17 1.2E-21 140.0 10.2 96 272-394 2-98 (101)
22 smart00450 RHOD Rhodanese Homo 99.7 3.8E-17 8.1E-22 135.9 8.3 99 284-398 2-100 (100)
23 cd01535 4RHOD_Repeat_4 Member 99.7 4.9E-17 1.1E-21 151.2 9.6 98 277-404 2-99 (145)
24 PF00581 Rhodanese: Rhodanese- 99.7 1.3E-16 2.8E-21 137.0 11.3 108 273-395 1-113 (113)
25 PRK11493 sseA 3-mercaptopyruva 99.7 4.3E-17 9.3E-22 165.8 9.6 119 271-404 6-138 (281)
26 cd01447 Polysulfide_ST Polysul 99.7 6.6E-17 1.4E-21 138.2 8.6 102 272-396 1-103 (103)
27 KOG1530 Rhodanese-related sulf 99.7 7.2E-17 1.6E-21 147.3 8.8 116 267-400 20-135 (136)
28 cd01524 RHOD_Pyr_redox Member 99.7 9.7E-17 2.1E-21 135.8 8.8 89 272-393 1-89 (90)
29 cd01445 TST_Repeats Thiosulfat 99.7 1E-16 2.2E-21 147.9 8.8 108 272-393 1-137 (138)
30 PRK07878 molybdopterin biosynt 99.7 7E-17 1.5E-21 172.1 8.9 180 188-398 183-387 (392)
31 PLN02723 3-mercaptopyruvate su 99.7 1.3E-16 2.8E-21 165.6 10.0 119 270-403 22-153 (320)
32 PRK07411 hypothetical protein; 99.7 1.4E-16 2.9E-21 169.9 9.7 182 189-399 176-386 (390)
33 cd01530 Cdc25 Cdc25 phosphatas 99.7 2.5E-16 5.5E-21 141.8 9.7 99 271-393 3-120 (121)
34 PRK08762 molybdopterin biosynt 99.7 2.7E-16 5.8E-21 166.4 11.4 107 270-406 3-109 (376)
35 cd01529 4RHOD_Repeats Member o 99.7 3E-16 6.6E-21 134.1 8.6 87 284-394 10-96 (96)
36 PRK09629 bifunctional thiosulf 99.7 2.5E-16 5.5E-21 176.3 10.5 119 270-403 9-131 (610)
37 COG0607 PspE Rhodanese-related 99.7 3.6E-16 7.7E-21 134.7 8.7 96 278-401 12-108 (110)
38 cd01522 RHOD_1 Member of the R 99.7 2.3E-16 5E-21 140.7 7.8 103 272-394 1-104 (117)
39 cd01532 4RHOD_Repeat_1 Member 99.6 3E-16 6.5E-21 133.9 7.9 84 283-394 7-92 (92)
40 cd01531 Acr2p Eukaryotic arsen 99.6 2E-15 4.4E-20 133.0 10.0 101 270-395 2-112 (113)
41 cd00158 RHOD Rhodanese Homolog 99.6 3.3E-15 7.1E-20 123.0 7.6 88 277-393 2-89 (89)
42 PRK05597 molybdopterin biosynt 99.6 6.3E-16 1.4E-20 162.9 3.5 168 189-395 166-355 (355)
43 KOG2017 Molybdopterin synthase 99.6 1.2E-15 2.5E-20 158.2 5.3 184 183-395 196-419 (427)
44 COG2897 SseA Rhodanese-related 99.6 4.8E-15 1E-19 152.2 9.5 121 271-405 12-142 (285)
45 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 1.1E-14 2.3E-19 128.6 8.7 98 271-393 3-112 (113)
46 PRK01415 hypothetical protein; 99.6 1.2E-14 2.7E-19 146.5 10.1 102 270-396 112-213 (247)
47 TIGR02981 phageshock_pspE phag 99.6 1.2E-14 2.7E-19 127.7 8.8 81 285-394 17-97 (101)
48 PRK10287 thiosulfate:cyanide s 99.5 1.8E-14 3.9E-19 127.5 7.8 81 285-394 19-99 (104)
49 PRK05320 rhodanese superfamily 99.5 3.3E-14 7.1E-19 144.1 10.6 102 270-395 110-216 (257)
50 PRK00142 putative rhodanese-re 99.5 7.4E-14 1.6E-18 145.3 10.5 100 270-394 112-211 (314)
51 PRK05600 thiamine biosynthesis 99.5 2.3E-14 5.1E-19 152.0 5.1 168 189-390 182-369 (370)
52 PRK11784 tRNA 2-selenouridine 99.4 7E-13 1.5E-17 139.7 10.7 112 273-401 4-135 (345)
53 cd01446 DSP_MapKP N-terminal r 99.4 1.1E-12 2.3E-17 118.7 10.2 109 271-398 1-129 (132)
54 TIGR03167 tRNA_sel_U_synt tRNA 99.4 2E-12 4.3E-17 134.6 10.1 104 286-402 2-122 (311)
55 KOG1529 Mercaptopyruvate sulfu 99.0 1.3E-09 2.9E-14 111.4 8.7 123 270-404 5-139 (286)
56 PRK01269 tRNA s(4)U8 sulfurtra 99.0 1.1E-09 2.3E-14 120.2 7.7 73 285-387 406-482 (482)
57 KOG1529 Mercaptopyruvate sulfu 98.9 3.5E-09 7.6E-14 108.3 8.8 151 224-394 70-275 (286)
58 COG1054 Predicted sulfurtransf 98.7 1.4E-08 3E-13 104.6 5.7 99 271-394 114-212 (308)
59 KOG3772 M-phase inducer phosph 98.5 2.3E-07 5E-12 96.8 6.9 103 270-395 156-276 (325)
60 COG5105 MIH1 Mitotic inducer, 97.2 0.00064 1.4E-08 71.3 6.3 99 269-394 241-357 (427)
61 COG2603 Predicted ATPase [Gene 93.3 0.13 2.8E-06 53.9 5.4 102 276-393 7-127 (334)
62 TIGR01244 conserved hypothetic 93.2 0.17 3.7E-06 46.7 5.6 111 270-401 13-130 (135)
63 PF04273 DUF442: Putative phos 93.0 0.11 2.3E-06 47.0 3.8 88 269-373 12-105 (110)
64 PF13350 Y_phosphatase3: Tyros 86.4 2.6 5.7E-05 39.7 7.4 98 269-380 27-152 (164)
65 KOG1093 Predicted protein kina 85.4 0.33 7.1E-06 55.0 0.8 97 270-392 622-718 (725)
66 PF05237 MoeZ_MoeB: MoeZ/MoeB 84.4 0.13 2.9E-06 43.8 -2.2 46 189-237 3-48 (84)
67 PRK00142 putative rhodanese-re 83.9 0.15 3.3E-06 53.7 -2.5 54 267-330 11-64 (314)
68 cd01445 TST_Repeats Thiosulfat 81.9 2.1 4.5E-05 39.7 4.5 99 162-269 2-124 (138)
69 PF11127 DUF2892: Protein of u 81.0 3.1 6.8E-05 33.7 4.7 45 428-476 14-58 (66)
70 cd00127 DSPc Dual specificity 78.3 6.3 0.00014 35.2 6.3 27 353-379 80-109 (139)
71 KOG1717 Dual specificity phosp 77.4 2.3 4.9E-05 44.5 3.5 97 272-394 6-123 (343)
72 PF14159 CAAD: CAAD domains of 69.0 7.2 0.00016 34.2 4.1 37 446-482 48-84 (90)
73 PLN02777 photosystem I P subun 67.8 5.7 0.00012 38.7 3.5 38 446-483 123-160 (167)
74 KOG3636 Uncharacterized conser 58.4 34 0.00073 38.5 7.6 22 286-307 326-347 (669)
75 PF05706 CDKN3: Cyclin-depende 56.3 28 0.00061 34.1 6.0 80 289-378 75-159 (168)
76 TIGR03167 tRNA_sel_U_synt tRNA 54.6 26 0.00056 37.2 5.9 32 272-304 138-172 (311)
77 PF01451 LMWPc: Low molecular 54.0 10 0.00023 34.3 2.6 36 357-392 1-41 (138)
78 PF01442 Apolipoprotein: Apoli 53.3 2.5 5.5E-05 39.4 -1.7 31 95-125 49-79 (202)
79 PF09992 DUF2233: Predicted pe 52.3 17 0.00038 34.2 3.9 40 353-392 99-143 (170)
80 smart00195 DSPc Dual specifici 50.6 53 0.0012 29.4 6.6 28 352-379 76-106 (138)
81 PLN02806 complex I subunit 48.8 18 0.00039 31.3 2.9 55 427-487 5-68 (81)
82 PF02590 SPOUT_MTase: Predicte 47.4 60 0.0013 31.1 6.7 73 348-420 61-144 (155)
83 KOG0781 Signal recognition par 46.0 94 0.002 35.5 8.7 106 72-189 271-385 (587)
84 COG2519 GCD14 tRNA(1-methylade 45.5 30 0.00064 36.1 4.5 32 352-383 186-217 (256)
85 smart00226 LMWPc Low molecular 45.5 22 0.00048 32.4 3.3 36 357-392 1-37 (140)
86 PLN02727 NAD kinase 43.8 40 0.00087 41.0 5.8 82 270-365 267-352 (986)
87 PF05957 DUF883: Bacterial pro 41.1 47 0.001 28.7 4.5 48 70-117 6-53 (94)
88 PF03853 YjeF_N: YjeF-related 40.4 46 0.00099 31.8 4.7 51 352-403 23-88 (169)
89 PRK08223 hypothetical protein; 37.6 18 0.00039 38.1 1.6 21 285-306 247-267 (287)
90 PRK00103 rRNA large subunit me 34.5 98 0.0021 29.8 5.9 71 350-420 63-144 (157)
91 PRK08762 molybdopterin biosynt 34.1 56 0.0012 35.2 4.7 43 353-396 134-176 (376)
92 PF05957 DUF883: Bacterial pro 32.1 64 0.0014 27.9 3.9 59 77-135 6-64 (94)
93 PF00782 DSPc: Dual specificit 31.7 68 0.0015 28.4 4.2 28 352-379 71-101 (133)
94 TIGR02689 ars_reduc_gluta arse 31.6 75 0.0016 28.8 4.4 35 356-390 2-37 (126)
95 COG0062 Uncharacterized conser 30.7 82 0.0018 31.7 4.9 31 354-385 49-82 (203)
96 PRK10126 tyrosine phosphatase; 30.6 59 0.0013 30.3 3.7 37 355-392 3-40 (147)
97 PLN03050 pyridoxine (pyridoxam 30.2 75 0.0016 32.6 4.6 31 354-385 60-93 (246)
98 cd00115 LMWPc Substituted upda 27.6 55 0.0012 29.9 2.9 37 356-392 2-40 (141)
99 cd01448 TST_Repeat_1 Thiosulfa 27.4 40 0.00087 29.6 1.9 72 165-245 6-84 (122)
100 cd02071 MM_CoA_mut_B12_BD meth 27.0 1.3E+02 0.0028 27.1 5.1 46 353-398 49-104 (122)
101 PRK11391 etp phosphotyrosine-p 26.3 78 0.0017 29.6 3.7 37 355-392 3-40 (144)
102 COG2085 Predicted dinucleotide 25.9 3.2E+02 0.007 27.8 8.1 27 354-380 147-174 (211)
103 TIGR00197 yjeF_nterm yjeF N-te 25.8 1.1E+02 0.0023 30.4 4.7 33 352-385 43-78 (205)
104 COG2453 CDC14 Predicted protei 23.9 84 0.0018 30.3 3.5 28 352-379 103-133 (180)
105 PRK10565 putative carbohydrate 23.5 1.1E+02 0.0024 34.6 4.9 33 352-385 58-93 (508)
106 PRK13530 arsenate reductase; P 23.4 1.3E+02 0.0028 27.7 4.5 35 355-389 4-39 (133)
107 PF06152 Phage_min_cap2: Phage 22.6 2.7E+02 0.0059 30.2 7.4 113 78-197 126-242 (361)
108 cd01449 TST_Repeat_2 Thiosulfa 21.5 1.5E+02 0.0032 25.6 4.3 58 176-246 16-84 (118)
109 COG3453 Uncharacterized protei 21.2 1.5E+02 0.0033 27.9 4.3 86 269-373 13-106 (130)
110 PTZ00242 protein tyrosine phos 20.0 4.7E+02 0.01 25.0 7.7 18 352-369 96-114 (166)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.80 E-value=1e-19 Score=188.73 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=148.9
Q ss_pred chhhhhhhhhHHhhhhhhccCc---------ceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHH
Q 008704 160 VAAVDVLRNTIVALEESMTNGA---------SFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEG 230 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~---------~~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~ 230 (557)
-+++|||++.+..-+-.|.|.+ +...|.-||++..+.-++.+....... ....+. ....|+.
T Consensus 23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~----~~~~lp-----~~~~~~~ 93 (320)
T PLN02723 23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD----LPHMLP-----SEEAFAA 93 (320)
T ss_pred eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC----cCCCCC-----CHHHHHH
Confidence 5667788877754444556653 124577899998887776653322111 111111 1345777
Q ss_pred HHHhcCCCCCCCceehhhhhhhHHHHHHHHHHHHhcCCC---------------------c-------------------
Q 008704 231 LERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G------------------- 270 (557)
Q Consensus 231 l~~~lG~~~~~pVv~~~v~vg~~~~l~~l~~l~~~~g~~---------------------g------------------- 270 (557)
..+.+|++++++||+|.-. |.. ....+||.+++.||. +
T Consensus 94 ~l~~~Gi~~~~~VVvY~~~-g~~-~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~~~~~~~ 171 (320)
T PLN02723 94 AVSALGIENKDGVVVYDGK-GIF-SAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILKASAASEAIEKV 171 (320)
T ss_pred HHHHcCCCCCCEEEEEcCC-Ccc-hHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccccccccccccccc
Confidence 7788999999999865321 111 111234443332221 0
Q ss_pred -------------------ccCHHHHHHHHhCCCCeEEEEcCChhhH-----------hhCCCCCccccccccccccCcc
Q 008704 271 -------------------DLSPKSTLELLRGKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLP 320 (557)
Q Consensus 271 -------------------~ISpeea~elL~~~~~avLIDVRs~~Ey-----------~~GHIPGA~gav~~~~~nIPl~ 320 (557)
.++.+++.+.+. +++.+|||+|++.|| +.||||||+ |+|+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAv--------nip~~ 242 (320)
T PLN02723 172 YQGQTVSPITFQTKFQPHLVWTLEQVKKNIE-DKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSK--------CVPFP 242 (320)
T ss_pred cccCCCCCCcccccCCccceecHHHHHHhhc-CCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCc--------ccCHH
Confidence 035667777774 456889999999998 569999998 88886
Q ss_pred cccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHc-CCce
Q 008704 321 EVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE-GLRI 399 (557)
Q Consensus 321 eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaa-GLPV 399 (557)
.+.... ..+++++++++++.++|+ +++++||+||++|.||..+++.|+.+||++|++|+|||.+|... .+|+
T Consensus 243 ~~~~~~-~~~~~~~el~~~~~~~gi------~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv 315 (320)
T PLN02723 243 QMLDSS-QTLLPAEELKKRFEQEGI------SLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPV 315 (320)
T ss_pred HhcCCC-CCCCCHHHHHHHHHhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCc
Confidence 554332 356778899999998888 58899999999999999999999999999999999999999874 6887
Q ss_pred ec
Q 008704 400 KE 401 (557)
Q Consensus 400 ~~ 401 (557)
++
T Consensus 316 ~~ 317 (320)
T PLN02723 316 AT 317 (320)
T ss_pred cC
Confidence 65
No 2
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.80 E-value=1.1e-19 Score=184.81 Aligned_cols=215 Identities=18% Similarity=0.175 Sum_probs=146.3
Q ss_pred chhhhhhhhhHHhhhhhhccCcc----------eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHH
Q 008704 160 VAAVDVLRNTIVALEESMTNGAS----------FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIE 229 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~----------~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~Vl~~~G~a~~q~~~~iE 229 (557)
-|..|+|++++..-+-.|.|.|+ .-.|.-||++.....+..+.... .+ +...... ....++
T Consensus 6 lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~----~~----~~~~~~~-~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDH----TS----PLPHMMP-RPETFA 76 (281)
T ss_pred ccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCC----CC----CCCCCCC-CHHHHH
Confidence 36778888888665667888886 24567789998776555432111 11 1111111 123466
Q ss_pred HHHHhcCCCCCCCceehhhhhhhHHHHHHHHHHHHhcCCC---------------------c-----------------c
Q 008704 230 GLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS---------------------G-----------------D 271 (557)
Q Consensus 230 ~l~~~lG~~~~~pVv~~~v~vg~~~~l~~l~~l~~~~g~~---------------------g-----------------~ 271 (557)
.+.+.+|+++++|||+|.-.-+.. ...+||.+.+.||. + .
T Consensus 77 ~~~~~~Gi~~d~~VVvyc~~~~~~--a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 154 (281)
T PRK11493 77 VAMRELGVNQDKHLVVYDEGNLFS--APRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAV 154 (281)
T ss_pred HHHHHcCCCCCCEEEEECCCCCch--HHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccce
Confidence 677778999999998654211111 11233333222211 0 1
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHh-----------hCCCCCccccccccccccCcccccchHHhhhcCchhhhhHH
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-----------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~-----------~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll 340 (557)
.+.+++...+. .++++|||+|+++||. .||||||+ |+|+.++... ..++++++++..+
T Consensus 155 ~~~~~v~~~~~-~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~--------~i~~~~~~~~--~~~~~~~~l~~~~ 223 (281)
T PRK11493 155 VRLTDVLLASH-EKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGAL--------NVPWTELVRE--GELKTTDELDAIF 223 (281)
T ss_pred ecHHHHHHhhc-CCCcEEEeCCCccceeeeccCCCCCcccccCCCcC--------CCCHHHhcCC--CCcCCHHHHHHHH
Confidence 12233443443 3468999999999994 69999998 8887665432 2456678888888
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH-cCCceecc
Q 008704 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 341 ~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka-aGLPV~~~ 402 (557)
.+.|+ +++++||+||++|.||..+++.|+.+||+++++|+|||.+|.. .++|++.+
T Consensus 224 ~~~g~------~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 224 FGRGV------SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred HhcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 88888 5788999999999999999999999999999999999999998 79998764
No 3
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.80 E-value=2.2e-19 Score=157.06 Aligned_cols=99 Identities=26% Similarity=0.220 Sum_probs=83.8
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK 349 (557)
..++++++.++++++.+.+|||||++.||..+|||||+ |+|+.++......+ +
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgai--------nip~~~l~~~~~~l--------------~----- 62 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSV--------SCPGAELVLRVGEL--------------A----- 62 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCce--------eCCHHHHHHHHHhc--------------C-----
Confidence 46999999999965446799999999999999999998 89986654332211 1
Q ss_pred ccCCCCeEEEEeCCCcHHHHHHHHHHHccCCc-EEEecccHHHHHHcC
Q 008704 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQSWVKEG 396 (557)
Q Consensus 350 ~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~n-V~vLdGG~~aWkaaG 396 (557)
.+++++||+||++|.||..+++.|+.+||++ +++|+||+.+|+.+|
T Consensus 63 -~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 -PDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred -CCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 1467899999999999999999999999988 999999999999876
No 4
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.4e-19 Score=183.63 Aligned_cols=215 Identities=17% Similarity=0.191 Sum_probs=159.5
Q ss_pred cchhhhhhhhhHH-----hhhhhhccCcc--eEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHH
Q 008704 159 TVAAVDVLRNTIV-----ALEESMTNGAS--FVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGL 231 (557)
Q Consensus 159 ~~~~~d~l~~~~~-----~~~~~~~~~~~--~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l 231 (557)
--|+.|||.+++. .++-++....+ -..|.-||++..+..++...++-.....+ .+-. ...|+.+
T Consensus 11 ~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~----~lp~-----~e~fa~~ 81 (285)
T COG2897 11 FLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPH----MLPS-----PEQFAKL 81 (285)
T ss_pred eEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCC----CCCC-----HHHHHHH
Confidence 4578899998875 33333333333 36788899999999998877766332112 1111 2347777
Q ss_pred HHhcCCCCCCCceehhhhhhhHHHHHH--HHHHHHhcCCC--------------------------------------cc
Q 008704 232 ERSLGFDPNDPIVPFVVFLGTSATLWI--FYWWWTYGGYS--------------------------------------GD 271 (557)
Q Consensus 232 ~~~lG~~~~~pVv~~~v~vg~~~~l~~--l~~l~~~~g~~--------------------------------------g~ 271 (557)
.+.+||..+++||+ |+..+.+++ +||++++-|.. ..
T Consensus 82 ~~~~GI~~d~tVVv----Ydd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~ 157 (285)
T COG2897 82 LGELGIRNDDTVVV----YDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAV 157 (285)
T ss_pred HHHcCCCCCCEEEE----ECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCcccc
Confidence 88899999999975 444443333 56766542221 12
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHhh----------CCCCCccccccccccccCcccccchHHhhhcCchhhhhHHH
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRER----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~~----------GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~ 341 (557)
.+.++....++ ....+|||+|++++|+. ||||||+ |+|+..+.+ -..+++.+++++.++.
T Consensus 158 ~~~~~~~~~~~-~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAi--------Nipw~~~~~-~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 158 VDATLVADALE-VPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAI--------NIPWTDLVD-DGGLFKSPEEIARLYA 227 (285)
T ss_pred CCHHHHHHHhc-CCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCc--------CcCHHHHhc-CCCccCcHHHHHHHHH
Confidence 34556666664 46788999999999988 9999999 999988776 4456777788888888
Q ss_pred HHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH-cCCceecc
Q 008704 342 AAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 342 alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka-aGLPV~~~ 402 (557)
..|| +++++||+||++|.||+..+..|+.+|+.++++|+|+|.+|.+ .+.||+++
T Consensus 228 ~~gi------~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g 283 (285)
T COG2897 228 DAGI------DPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETG 283 (285)
T ss_pred hcCC------CCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccC
Confidence 8898 6999999999999999999999999999988999999999997 45688764
No 5
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.77 E-value=1.3e-18 Score=149.99 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=81.2
Q ss_pred ccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 008704 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~ 350 (557)
.|+++++.+++. +++.+|||||++.||..+|||||+ |+|+.++...... +.+ +..
T Consensus 3 ~is~~~l~~~~~-~~~~~iiDvR~~~e~~~ghi~gA~--------~ip~~~~~~~~~~-------~~~---------~~~ 57 (101)
T cd01518 3 YLSPAEWNELLE-DPEVVLLDVRNDYEYDIGHFKGAV--------NPDVDTFREFPFW-------LDE---------NLD 57 (101)
T ss_pred cCCHHHHHHHHc-CCCEEEEEcCChhhhhcCEecccc--------CCCcccHhHhHHH-------HHh---------hhh
Confidence 589999999985 567899999999999999999998 8998765432111 110 001
Q ss_pred cCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHH
Q 008704 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 351 ~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWk 393 (557)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|.
T Consensus 58 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 58 LLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred hcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHh
Confidence 2688999999999999999999999999999999999999996
No 6
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.77 E-value=1.6e-18 Score=148.55 Aligned_cols=97 Identities=29% Similarity=0.479 Sum_probs=84.3
Q ss_pred ccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 008704 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~ 350 (557)
.++++++.++++. +.+|||+|+++||..+|||||+ |+|+.++..... .
T Consensus 3 ~i~~~el~~~~~~--~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~----------------------~ 50 (99)
T cd01527 3 TISPNDACELLAQ--GAVLVDIREPDEYLRERIPGAR--------LVPLSQLESEGL----------------------P 50 (99)
T ss_pred ccCHHHHHHHHHC--CCEEEECCCHHHHHhCcCCCCE--------ECChhHhccccc----------------------C
Confidence 5899999999864 3899999999999999999998 888766543210 1
Q ss_pred cCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCce
Q 008704 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 351 ~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV 399 (557)
.+++++||+||++|.|+..++..|+++||+++++|+||+.+|+..|+|+
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 2678899999999999999999999999999999999999999999985
No 7
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.76 E-value=1.4e-18 Score=194.39 Aligned_cols=216 Identities=17% Similarity=0.091 Sum_probs=153.5
Q ss_pred chhhhhhhhhHHhhhhhhccCcceEEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC
Q 008704 160 VAAVDVLRNTIVALEESMTNGASFVVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP 239 (557)
Q Consensus 160 ~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG~~~~~lp~~i~~~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~~~ 239 (557)
-++.++|++.+..-+-.|.|.|+.--|.-||++..+.-++...........+ .+.. ...++...+.+|+++
T Consensus 10 lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~----~lp~-----~~~l~~~l~~lGI~~ 80 (610)
T PRK09629 10 VIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPG----LLPD-----TADLEQLFGELGHNP 80 (610)
T ss_pred eecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCC----CCCC-----HHHHHHHHHHcCCCC
Confidence 3778889988866666788888877888899998776665443221111111 1111 233666667789999
Q ss_pred CCCceehhhhhhhHHHHHHHHHHHHhcCCC--------------------------------------cccCHHHHHHHH
Q 008704 240 NDPIVPFVVFLGTSATLWIFYWWWTYGGYS--------------------------------------GDLSPKSTLELL 281 (557)
Q Consensus 240 ~~pVv~~~v~vg~~~~l~~l~~l~~~~g~~--------------------------------------g~ISpeea~elL 281 (557)
+++||+|.-.-+.. ...+||.+++.|+. -.++.+++.+.+
T Consensus 81 d~~VVvYd~~g~~~--A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l 158 (610)
T PRK09629 81 DAVYVVYDDEGGGW--AGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRL 158 (610)
T ss_pred CCEEEEECCCCCch--HHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhh
Confidence 99998643211111 11244543332210 124677888887
Q ss_pred hCCCCeEEEEcCChhhHh--------hCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCC
Q 008704 282 RGKENAVLIDVRHEDLRE--------RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQD 353 (557)
Q Consensus 282 ~~~~~avLIDVRs~~Ey~--------~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~k 353 (557)
. +++.+|||+|+++||. .||||||+ |+|+..+.... ..+++++++++++..+|+ ++
T Consensus 159 ~-~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAv--------nip~~~~~~~~-~~lk~~~el~~~~~~~Gi------~~ 222 (610)
T PRK09629 159 G-AADLAIWDARAPTEYSGEKVVAAKGGHIPGAV--------NFEWTAGMDKA-RNLRIRQDMPEILRDLGI------TP 222 (610)
T ss_pred C-CCCcEEEECCCccccCCcccccccCCCCCCCe--------ecCHHHhcCCC-CCCCCHHHHHHHHHHcCC------CC
Confidence 4 4678999999999994 79999998 88875443221 235677889999988888 58
Q ss_pred CCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH-cCCceecc
Q 008704 354 RSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK-EGLRIKEL 402 (557)
Q Consensus 354 d~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka-aGLPV~~~ 402 (557)
+++||+||++|.||..+++.|+.+||++|++|+|||.+|.+ .++|+++.
T Consensus 223 ~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 223 DKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 99999999999999999999999999999999999999997 57898763
No 8
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.76 E-value=2.2e-18 Score=147.20 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=77.9
Q ss_pred cCHHHHHHHHhCC-CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 008704 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISpeea~elL~~~-~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~ 350 (557)
|+++++.+++.++ ++.+|||||++.||..||||||+ |+|+.++......+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~--------~ip~~~l~~~~~~~~-------------------- 52 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFR--------HTPGGQLVQETDHFA-------------------- 52 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcE--------eCCHHHHHHHHHHhc--------------------
Confidence 6889999999754 36889999999999999999998 898765543222111
Q ss_pred cCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
..++++||+||++|.||..++..|+.+||+ |++|+||+.+|.+
T Consensus 53 ~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 53 PVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred ccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 135789999999999999999999999998 9999999999973
No 9
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.75 E-value=3.1e-18 Score=149.53 Aligned_cols=101 Identities=21% Similarity=0.295 Sum_probs=87.2
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK 349 (557)
..++++++.+++. .++.++||+|++.||..+|||||+ |+|+..+...+.
T Consensus 5 ~~is~~el~~~l~-~~~~~ivDvR~~~e~~~ghi~gA~--------~ip~~~l~~~~~---------------------- 53 (108)
T PRK00162 5 ECINVEQAHQKLQ-EGGAVLVDIRDPQSFAMGHAPGAF--------HLTNDSLGAFMR---------------------- 53 (108)
T ss_pred cccCHHHHHHHHH-cCCCEEEEcCCHHHHhcCCCCCCe--------ECCHHHHHHHHH----------------------
Confidence 4689999999985 346899999999999999999998 888755433221
Q ss_pred ccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCceec
Q 008704 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 350 ~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~ 401 (557)
.+++++++++||.+|.++..++..|+..||+++++|+||+.+|+..++|++.
T Consensus 54 ~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 54 QADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred hcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 1267889999999999999999999999999999999999999999999875
No 10
>PLN02160 thiosulfate sulfurtransferase
Probab=99.75 E-value=4e-18 Score=156.81 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=88.2
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCc--cccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhh
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL--RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA--~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~ 347 (557)
..++++++.+++++ +.+|||||++.||..|||||| + |+|+..+.. .. .+.+++++.... +
T Consensus 15 ~~i~~~e~~~~~~~--~~~lIDVR~~~E~~~ghIpgA~~i--------niP~~~~~~-~~-~l~~~~~~~~~~-~----- 76 (136)
T PLN02160 15 VSVDVSQAKTLLQS--GHQYLDVRTQDEFRRGHCEAAKIV--------NIPYMLNTP-QG-RVKNQEFLEQVS-S----- 76 (136)
T ss_pred eEeCHHHHHHHHhC--CCEEEECCCHHHHhcCCCCCccee--------cccchhcCc-cc-ccCCHHHHHHHH-h-----
Confidence 46899999999853 468999999999999999999 6 677633311 11 111222222111 0
Q ss_pred hcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccC
Q 008704 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (557)
Q Consensus 348 LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~ 403 (557)
..+++++||+||++|.||..++..|...||++|++|.|||.+|.++|+|+++..
T Consensus 77 --~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 --LLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred --ccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 126788999999999999999999999999999999999999999999998744
No 11
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.75 E-value=4.6e-18 Score=146.09 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=80.0
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccc
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~ 351 (557)
|+++++.++++++++++|||||++.||+.+|||||+ |+|+.++....... .... +..+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~--------~ip~~~~~~~~~~~------~~~~--------~~~~ 58 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGEN--------NTPYFDPYFDFLEI------EEDI--------LDQL 58 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCc--------ccccccchHHHHHh------hHHH--------HhhC
Confidence 688999999976567899999999999999999998 88886654321000 0000 0123
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHH
Q 008704 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWk 393 (557)
+++++||+||.+|.||..++..|+.+||+ +++|+||+.+|+
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 68899999999999999999999999998 999999999996
No 12
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.75 E-value=3.6e-18 Score=151.57 Aligned_cols=110 Identities=25% Similarity=0.299 Sum_probs=92.4
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCCh-------hhHhhCCCCCccccccccccccCcccccch---HHhhhcCchhhhhHHH
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHE-------DLRERDGIPDLRRGARFRYASVYLPEVGGS---VKKLLRGGRELDDTLT 341 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~-------~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~---l~~ll~n~~~L~~ll~ 341 (557)
++++++.+++.+ ++.+|||+|++ .+|..+|||||+ |+|+.++... ...++++++++.+.+.
T Consensus 2 i~~~~l~~~l~~-~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd01448 2 VSPDWLAEHLDD-PDVRILDARWYLPDRDGRKEYLEGHIPGAV--------FFDLDEDLDDKSPGPHMLPSPEEFAELLG 72 (122)
T ss_pred cCHHHHHHHhCC-CCeEEEEeecCCCCCchhhHHhhCCCCCCE--------EcChhhccccCCCCCCCCCCHHHHHHHHH
Confidence 789999999953 57899999999 999999999998 8887665432 2345666677777776
Q ss_pred HHHHhhhcccCCCCeEEEEeCC-CcHHHHHHHHHHHccCCcEEEecccHHHHHHcC
Q 008704 342 AAVIRNLKIVQDRSKVIVMDAD-GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 342 alGI~~LK~~~kd~~VVVyC~s-G~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaG 396 (557)
..++ +++++|||||++ |.++..+++.|+.+||++|++|+|||.+|+++|
T Consensus 73 ~~~~------~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 73 SLGI------SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HcCC------CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 6666 689999999999 589999999999999999999999999999875
No 13
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.75 E-value=2.6e-18 Score=148.13 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=83.9
Q ss_pred CHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccC
Q 008704 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Speea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~ 352 (557)
+++++.++++.+++.+|||+|++.||..||||||+ |+|+.++... ...+++.+.+.+...++ +
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~~~~~---~~~~~~~~~~~~~~~~~------~ 64 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAI--------NIPLSSLPDA---LALSEEEFEKKYGFPKP------S 64 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcE--------EechHHhhhh---hCCCHHHHHHHhcccCC------C
Confidence 67888888842457999999999999999999998 8888665432 12233344444443343 5
Q ss_pred CCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 353 kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|.+
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 789999999999999999999999999999999999999963
No 14
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.74 E-value=1.2e-17 Score=146.64 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=84.3
Q ss_pred CcccCHHHHHHHHhCC-CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhh
Q 008704 269 SGDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 269 ~g~ISpeea~elL~~~-~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~ 347 (557)
...++++++.++++++ ++.+|||+|++.+|..+|||||+ ++|...+.....
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~--------~ip~~~l~~~~~-------------------- 58 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAI--------NLPHREICENAT-------------------- 58 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCE--------eCCHHHhhhHhh--------------------
Confidence 3579999999999754 46899999999999999999998 888755432110
Q ss_pred hcccCCCCeEEEEeCCCc--HHHHHHHHHHHccCCcEEEecccHHHHHHcCCce
Q 008704 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 348 LK~~~kd~~VVVyC~sG~--RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV 399 (557)
..++++++||+||++|. ++..+++.|+.+|| ++++|+||+.+|+.+|+|+
T Consensus 59 -~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~-~v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 59 -AKLDKEKLFVVYCDGPGCNGATKAALKLAELGF-PVKEMIGGLDWWKREGYAT 110 (110)
T ss_pred -hcCCCCCeEEEEECCCCCchHHHHHHHHHHcCC-eEEEecCCHHHHHHCCCCC
Confidence 01368899999999884 89999999999999 5999999999999999985
No 15
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.73 E-value=4.3e-18 Score=149.77 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=89.7
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHhh-----------CCCCCccccccccccccCcccccchHHhhhcCchhhhhHH
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRER-----------DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~~-----------GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll 340 (557)
++++++.++++ +++++|||+|++.||.. ||||||+ |+|+..+.... ..+++++++++.+
T Consensus 1 ~s~~~l~~~l~-~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~--------~~p~~~~~~~~-~~~~~~~~~~~~~ 70 (118)
T cd01449 1 VTAEEVLANLD-SGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAV--------NIPWTSLLDED-GTFKSPEELRALF 70 (118)
T ss_pred CCHHHHHHhcC-CCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCc--------ccChHHhcCCC-CCcCCHHHHHHHH
Confidence 57889999885 45689999999999987 9999998 88876554322 3456667777777
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 341 ~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
..+++ +++++||+||++|.+|..+++.|+.+||+++++|+||+.+|.+
T Consensus 71 ~~~~~------~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 71 AALGI------TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHcCC------CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 77776 5889999999999999999999999999999999999999963
No 16
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.72 E-value=1.5e-17 Score=148.86 Aligned_cols=112 Identities=22% Similarity=0.259 Sum_probs=88.5
Q ss_pred CCcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhh
Q 008704 268 YSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRN 347 (557)
Q Consensus 268 ~~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~ 347 (557)
....|+++++.++++++++++|||+|++.||..+|||||+ |+|+.++......+.. + .+...+
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai--------~ip~~~~~~~~~~~~~----~--~~~~~~--- 68 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAI--------NIPLSELLSKAAELKS----L--QELPLD--- 68 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCe--------EccHHHHhhhhhhhhh----h--hhcccc---
Confidence 3457999999999965467899999999999999999998 8998766543221100 0 011112
Q ss_pred hcccCCCCeEEEEeCCCcHHHHHHHHHHHccC-CcEEEecccHHHHHHcCCce
Q 008704 348 LKIVQDRSKVIVMDADGTRSKGIARSLRKLGV-MRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 348 LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy-~nV~vLdGG~~aWkaaGLPV 399 (557)
.+++++||+||++|.||..+++.|+..|| +++++|+|||.+|+...-|.
T Consensus 69 ---~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 69 ---NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred ---cCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 26889999999999999999999999999 79999999999999876543
No 17
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.71 E-value=2.3e-17 Score=139.55 Aligned_cols=93 Identities=27% Similarity=0.372 Sum_probs=80.2
Q ss_pred ccCHHHHHHHHhCCCCeEEEEcCChhhHhh--CCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhh
Q 008704 271 DLSPKSTLELLRGKENAVLIDVRHEDLRER--DGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 271 ~ISpeea~elL~~~~~avLIDVRs~~Ey~~--GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~L 348 (557)
.|+++++.++++++++++|||+|++.||.. +|||||+ |+|+.++.....
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~--------~ip~~~~~~~~~--------------------- 51 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAI--------HLDEDSLDDWLG--------------------- 51 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCe--------eCCHHHHHHHHh---------------------
Confidence 378999999986545789999999999999 9999998 888865533221
Q ss_pred cccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHH
Q 008704 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 349 K~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWk 393 (557)
..+++++||+||++|.++..+++.|+..||+++++|+||+.+|+
T Consensus 52 -~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 52 -DLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred -hcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 13688999999999999999999999999999999999999996
No 18
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.71 E-value=2.8e-17 Score=155.52 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=83.8
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChh----hHhhC---------CCCCccccccccccccCc---ccccchHHhhhcCc
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHED----LRERD---------GIPDLRRGARFRYASVYL---PEVGGSVKKLLRGG 333 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~----Ey~~G---------HIPGA~gav~~~~~nIPl---~eL~~~l~~ll~n~ 333 (557)
..|+++++.+++. +++.+|||||++. ||..| |||||+ |+|. .++.... .
T Consensus 36 ~~vs~~el~~~l~-~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv--------~ip~~~~~~l~~~~------~ 100 (162)
T TIGR03865 36 RVLDTEAAQALLA-RGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSL--------WLPNTGYGNLAPAW------Q 100 (162)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCCccccccccccceeccccCCCCCCcE--------EecccCCCCCCCch------h
Confidence 4799999999995 4568999999876 46544 999998 6653 2222210 0
Q ss_pred hhhhhHHHHHHHhhhcccCCCCeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHHHHcCCce
Q 008704 334 RELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 334 ~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV 399 (557)
..+.+.+.++++ .+++++||+||++|. +|..+++.|+.+||++|++|+|||.+|+.+|+|+
T Consensus 101 ~~~~~~l~~~~~-----~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 101 AYFRRGLERATG-----GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHHHhcC-----CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112333333333 258999999999997 8999999999999999999999999999999985
No 19
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.71 E-value=3.1e-17 Score=141.45 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=78.1
Q ss_pred cCHHHHHHHHhCC-CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHH--hhhcCchhhhhHHHHHHHhhh
Q 008704 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVK--KLLRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 272 ISpeea~elL~~~-~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~--~ll~n~~~L~~ll~alGI~~L 348 (557)
||++++.+++.++ ++.+|||||++.||..||||||+ |+|+..+..... ..+++...+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~--------~ip~~~~~~~~~~~~~~~~~~~~~----------- 61 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSI--------NIPFSSVFLKEGELEQLPTVPRLE----------- 61 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCE--------eCCHHHhcccccccccccchHHHH-----------
Confidence 6899999999643 36899999999999999999998 888755421100 0011111111
Q ss_pred cccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHH
Q 008704 349 KIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 349 K~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWk 393 (557)
..++++||+||.+|.+|..+++.|+.+||++|++|+||+.+|+
T Consensus 62 --~~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 62 --NYKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred --hhcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 1247899999999999999999999999999999999999996
No 20
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.71 E-value=6e-17 Score=146.45 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=80.6
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchH-----------------HhhhcCch
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV-----------------KKLLRGGR 334 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l-----------------~~ll~n~~ 334 (557)
|+++++.+++. ++.+|||||++.||..||||||+ |+|+..+.... +..+. +.
T Consensus 1 ~s~~el~~~l~--~~~~iiDvR~~~e~~~ghIpgAi--------nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 69 (128)
T cd01520 1 ITAEDLLALRK--ADGPLIDVRSPKEFFEGHLPGAI--------NLPLLDDEERALVGTLYKQQGREAAIELGLELV-SG 69 (128)
T ss_pred CCHHHHHHHHh--cCCEEEECCCHHHhccCcCCCcE--------EccCCChhHHHHhhhheeccCHHHHHHHHHHHH-hh
Confidence 68999999985 46899999999999999999998 88875432110 00111 12
Q ss_pred hhhhHHHH---HHHhhhcccCCCCeEEEEeC-CCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 335 ELDDTLTA---AVIRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 335 ~L~~ll~a---lGI~~LK~~~kd~~VVVyC~-sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
.+++.+.. .++ +++++||+||+ +|.||..+++.|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i------~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARL------ERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhcc------CCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 23333433 245 68999999997 68899999999999999 69999999999985
No 21
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.70 E-value=5.3e-17 Score=139.96 Aligned_cols=96 Identities=27% Similarity=0.398 Sum_probs=80.2
Q ss_pred cCHHHHHHHHhCC-CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 008704 272 LSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISpeea~elL~~~-~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~ 350 (557)
|+++++.+++..+ .+.++||+|++.||..+|||||+ |+|+.++......+ ..
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~--------~ip~~~~~~~~~~~-------------------~~ 54 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFL--------HLPMSEIPERSKEL-------------------DS 54 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCE--------ecCHHHHHHHHHHh-------------------cc
Confidence 7899999999753 36899999999999999999998 89886654322211 01
Q ss_pred cCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
.+++++||+||++|.||..+++.|.+.||+++++|+||+.+|..
T Consensus 55 ~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 55 DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 14688999999999999999999999999999999999999975
No 22
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.70 E-value=3.8e-17 Score=135.87 Aligned_cols=99 Identities=29% Similarity=0.446 Sum_probs=76.2
Q ss_pred CCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCC
Q 008704 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 ~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~s 363 (557)
+++++|||+|++.||..+|||||+ |+|+..+...... .. ...+...+...+ .+++++||+||.+
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~--------~i~~~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~~~iv~~c~~ 65 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAV--------NIPLSELLDRRGE-LD-ILEFEELLKRLG------LDKDKPVVVYCRS 65 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCce--------eCCHHHhccCCCC-cC-HHHHHHHHHHcC------CCCCCeEEEEeCC
Confidence 357899999999999999999998 8887654432110 00 001222222223 3688999999999
Q ss_pred CcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCc
Q 008704 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 364 G~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLP 398 (557)
|.++..+++.|+.+||++|++|+||+.+|+..|+|
T Consensus 66 g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 66 GNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred CcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 99999999999999999999999999999998875
No 23
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.70 E-value=4.9e-17 Score=151.23 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=81.2
Q ss_pred HHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCe
Q 008704 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~ 356 (557)
+.+++.++.+++|||||++.+|+.+|||||+ ++|..++...+. ..+++++
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi--------~~~~~~l~~~l~----------------------~l~~~~~ 51 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAW--------WVLRAQLAQALE----------------------KLPAAER 51 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCCCce--------eCCHHHHHHHHH----------------------hcCCCCC
Confidence 4566655556899999999999999999998 776544432221 1256789
Q ss_pred EEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccCC
Q 008704 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 357 VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
||+||.+|.+|..+++.|+..||++|++|+||+.+|+++|+|++...+
T Consensus 52 vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 52 YVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 999999999999999999999999999999999999999999987543
No 24
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.70 E-value=1.3e-16 Score=136.98 Aligned_cols=108 Identities=29% Similarity=0.492 Sum_probs=79.4
Q ss_pred CHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccC
Q 008704 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQ 352 (557)
Q Consensus 273 Speea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~ 352 (557)
||+|+.+++ ++++.+|||+|++.+|..+|||||+ |+|...+... ........+...+...+. ..+
T Consensus 1 s~~el~~~l-~~~~~~liD~R~~~~~~~~hI~ga~--------~i~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~ 65 (113)
T PF00581_consen 1 SPEELKEML-ENESVLLIDVRSPEEYERGHIPGAV--------NIPFPSLDPD--EPSLSEDKLDEFLKELGK----KID 65 (113)
T ss_dssp -HHHHHHHH-TTTTEEEEEESSHHHHHHSBETTEE--------EEEGGGGSSS--SSBCHHHHHHHHHHHHTH----GST
T ss_pred CHHHHHhhh-hCCCeEEEEeCCHHHHHcCCCCCCc--------cccccccccc--cccccccccccccccccc----ccc
Confidence 689999999 5789999999999999999999997 7776443100 000001122222222222 346
Q ss_pred CCCeEEEEeCCCcHHHHHHHH-----HHHccCCcEEEecccHHHHHHc
Q 008704 353 DRSKVIVMDADGTRSKGIARS-----LRKLGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 353 kd~~VVVyC~sG~RS~~AA~~-----L~~lGy~nV~vLdGG~~aWkaa 395 (557)
++++|||||.+|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 888999999999988887776 8899999999999999999864
No 25
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.69 E-value=4.3e-17 Score=165.83 Aligned_cols=119 Identities=14% Similarity=0.237 Sum_probs=99.3
Q ss_pred ccCHHHHHHHHhCCCCeEEEEcCC----------hhhHhhCCCCCccccccccccccCcccccc---hHHhhhcCchhhh
Q 008704 271 DLSPKSTLELLRGKENAVLIDVRH----------EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (557)
Q Consensus 271 ~ISpeea~elL~~~~~avLIDVRs----------~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~---~l~~ll~n~~~L~ 337 (557)
.++++++.+++. +++.+|||+|+ +.+|+.||||||+ |+|+..+.. ....++++++.++
T Consensus 6 lvs~~~l~~~l~-~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (281)
T PRK11493 6 FVAADWLAEHID-DPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAV--------FFDIEALSDHTSPLPHMMPRPETFA 76 (281)
T ss_pred ccCHHHHHHhcC-CCCeEEEEeeCCCCCccccchHHHHHhCcCCCCE--------EcCHHHhcCCCCCCCCCCCCHHHHH
Confidence 489999999994 56799999997 7899999999998 666544322 2234566678889
Q ss_pred hHHHHHHHhhhcccCCCCeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccCC
Q 008704 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 338 ~ll~alGI~~LK~~~kd~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
+.+..+|| +++++||+||.+|. .+.++++.|+.+||++|++|+||+.+|.++|+|++...+
T Consensus 77 ~~~~~~Gi------~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 138 (281)
T PRK11493 77 VAMRELGV------NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV 138 (281)
T ss_pred HHHHHcCC------CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC
Confidence 99999998 68999999999877 467888999999999999999999999999999987643
No 26
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.69 E-value=6.6e-17 Score=138.22 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=79.4
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhH-hhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLR-ERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey-~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~ 350 (557)
|+++++.+++. +++.+|||+|++.+| ..||||||+ |+|+..+..... +.. .+...+
T Consensus 1 is~~el~~~~~-~~~~~iiDvR~~~~~~~~ghIpga~--------~ip~~~~~~~~~-----~~~---~~~~~~------ 57 (103)
T cd01447 1 LSPEDARALLG-SPGVLLVDVRDPRELERTGMIPGAF--------HAPRGMLEFWAD-----PDS---PYHKPA------ 57 (103)
T ss_pred CCHHHHHHHHh-CCCeEEEECCCHHHHHhcCCCCCcE--------EcccchhhhhcC-----ccc---cccccC------
Confidence 57899999985 357899999999998 579999998 888755432111 000 000011
Q ss_pred cCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcC
Q 008704 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 351 ~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaG 396 (557)
++++++||+||.+|.++..+++.|+.+||++|++|+||+.+|..+|
T Consensus 58 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 3688999999999999999999999999999999999999998765
No 27
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=7.2e-17 Score=147.33 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=93.6
Q ss_pred CCCcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHh
Q 008704 267 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIR 346 (557)
Q Consensus 267 g~~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~ 346 (557)
.....++.++++++++ .++.++||||+|+||.+||||.++ |||+...... ..+++++|+++ .|..
T Consensus 20 ~~~~sv~~~qvk~L~~-~~~~~llDVRepeEfk~gh~~~si--------NiPy~~~~~~--~~l~~~eF~kq----vg~~ 84 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQ-HPDVVLLDVREPEEFKQGHIPASI--------NIPYMSRPGA--GALKNPEFLKQ----VGSS 84 (136)
T ss_pred CCcEEEEHHHHHHHhc-CCCEEEEeecCHHHhhccCCcceE--------eccccccccc--cccCCHHHHHH----hccc
Confidence 4556789999999995 456999999999999999999998 8998433222 23555555543 2332
Q ss_pred hhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCcee
Q 008704 347 NLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIK 400 (557)
Q Consensus 347 ~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~ 400 (557)
..+.++.|||+|++|.||..|...|..+||++|.+|.|||.+|...|+|..
T Consensus 85 ---kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 85 ---KPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred ---CCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 234667999999999999999999999999999999999999999998864
No 28
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.68 E-value=9.7e-17 Score=135.80 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=76.1
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhccc
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIV 351 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~ 351 (557)
++|+++.+++. ++.++||+|++++|..+|||||+ |+|+.++..... .+
T Consensus 1 ~~~~e~~~~~~--~~~~iiD~R~~~~~~~~hipgA~--------~ip~~~~~~~~~----------------------~~ 48 (90)
T cd01524 1 VQWHELDNYRA--DGVTLIDVRTPQEFEKGHIKGAI--------NIPLDELRDRLN----------------------EL 48 (90)
T ss_pred CCHHHHHHHhc--CCCEEEECCCHHHHhcCCCCCCE--------eCCHHHHHHHHH----------------------hc
Confidence 47889999883 46799999999999999999998 888765533221 12
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHH
Q 008704 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 352 ~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWk 393 (557)
+++++||+||++|.++..+++.|++.|| ++++|+||+.+|+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 5788999999999999999999999999 9999999999996
No 29
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.68 E-value=1e-16 Score=147.91 Aligned_cols=108 Identities=22% Similarity=0.235 Sum_probs=89.7
Q ss_pred cCHHHHHHHHhC---CCCeEEEEcCCh--------hhHhh------------CCCCCccccccccccccCcccccc---h
Q 008704 272 LSPKSTLELLRG---KENAVLIDVRHE--------DLRER------------DGIPDLRRGARFRYASVYLPEVGG---S 325 (557)
Q Consensus 272 ISpeea~elL~~---~~~avLIDVRs~--------~Ey~~------------GHIPGA~gav~~~~~nIPl~eL~~---~ 325 (557)
++++++.+.+.+ +++.+|||+|.. ++|.. ||||||+ ++|+..+.. .
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv--------~~~~~~~~~~~~~ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGAS--------FFDFEECLDEAGF 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCE--------eeCHHHhhCcCCC
Confidence 578899999853 467999999987 89988 9999998 666544321 2
Q ss_pred HHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCC---CcHHHHHHHHHHHccCCcEEEecccHHHHH
Q 008704 326 VKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD---GTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 326 l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~s---G~RS~~AA~~L~~lGy~nV~vLdGG~~aWk 393 (557)
...++++++++++.|.++|| +++++||+||.+ |.++.++++.|+.+|+++|++|+||+.+|+
T Consensus 73 ~~~~~p~~~~~~~~~~~~GI------~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 EESMEPSEAEFAAMFEAKGI------DLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred CCCCCCCHHHHHHHHHHcCC------CCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 23456666789999999999 588999999986 779999999999999999999999999996
No 30
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.68 E-value=7e-17 Score=172.06 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=125.6
Q ss_pred ecccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCceehhhhhhhH----------
Q 008704 188 YGTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTS---------- 253 (557)
Q Consensus 188 yG~~~~~lp~~i~~--~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~~~--~~pVv~~~v~vg~~---------- 253 (557)
+|+|++|+.|+... .+..|.+ +| |++|.-+..+ +.++.|.++-.+|+.. ...++.+-......
T Consensus 183 ~~~c~~c~~~~~~~~~~~~~~~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 259 (392)
T PRK07878 183 LGLNYRDLYPEPPPPGMVPSCAE-GG-VLGVLCASIG-SIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRKDPS 259 (392)
T ss_pred CCCeeeeecCCCCCccCCCCCcc-CC-ccchHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEeeccCCC
Confidence 58999999875332 3445666 67 8899888888 6888899888888643 23333211111000
Q ss_pred -HHHHHH--HHHH-Hh-------cCCCcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccc
Q 008704 254 -ATLWIF--YWWW-TY-------GGYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEV 322 (557)
Q Consensus 254 -~~l~~l--~~l~-~~-------~g~~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL 322 (557)
....-+ |-.+ .. ..-...|+++++.++++++++.+|||+|+++||..+|||||+ |+|+.++
T Consensus 260 C~~~~~~~~~~~~c~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAi--------nip~~~l 331 (392)
T PRK07878 260 TPKITELIDYEAFCGVVSDEAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQ--------LIPKSEI 331 (392)
T ss_pred CCcccccccchhhcccccccccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCE--------EcChHHh
Confidence 000000 0000 00 011135899999999975556899999999999999999998 8888665
Q ss_pred cchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCc
Q 008704 323 GGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 323 ~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLP 398 (557)
.... .+ ..++++++||+||++|.||..+++.|++.||++|++|+||+.+|++...|
T Consensus 332 ~~~~--------~~------------~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 332 LSGE--------AL------------AKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred cchh--------HH------------hhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 4310 00 11368899999999999999999999999999999999999999987654
No 31
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.67 E-value=1.3e-16 Score=165.63 Aligned_cols=119 Identities=17% Similarity=0.294 Sum_probs=99.2
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcC--------C-hhhHhhCCCCCccccccccccccCcccccc---hHHhhhcCchhhh
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVR--------H-EDLRERDGIPDLRRGARFRYASVYLPEVGG---SVKKLLRGGRELD 337 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVR--------s-~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~---~l~~ll~n~~~L~ 337 (557)
..|+++++.+++. +++.+|||+| + .++|..||||||+ ++|+..+.. ....++++++.|+
T Consensus 22 ~lvs~~~L~~~l~-~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi--------~i~~~~~~~~~~~~~~~lp~~~~~~ 92 (320)
T PLN02723 22 PVVSVDWLHANLR-EPDVKVLDASWYMPDEQRNPIQEYQVAHIPGAL--------FFDLDGISDRTTDLPHMLPSEEAFA 92 (320)
T ss_pred ceecHHHHHHHhc-CCCeEEEEeeccccCCCCchHHHHHhccCCCCe--------ecCHHHhcCCCCCcCCCCCCHHHHH
Confidence 3699999999995 4689999996 3 3789999999998 666544432 2345667778899
Q ss_pred hHHHHHHHhhhcccCCCCeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccC
Q 008704 338 DTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (557)
Q Consensus 338 ~ll~alGI~~LK~~~kd~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~ 403 (557)
+.+.++|| +++++|||||+.|. .+.++++.|+.+||++|++|+||+.+|+.+|+|++...
T Consensus 93 ~~l~~~Gi------~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~ 153 (320)
T PLN02723 93 AAVSALGI------ENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA 153 (320)
T ss_pred HHHHHcCC------CCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence 99999999 58889999999886 56788999999999999999999999999999998753
No 32
>PRK07411 hypothetical protein; Validated
Probab=99.67 E-value=1.4e-16 Score=169.87 Aligned_cols=182 Identities=20% Similarity=0.212 Sum_probs=124.2
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCceehhhhhhhH-----------
Q 008704 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTS----------- 253 (557)
Q Consensus 189 G~~~~~lp~~i~~--~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~~~--~~pVv~~~v~vg~~----------- 253 (557)
||||+|++|+..+ .+..|.. +| |+++.-+..+ +.++.|.++-.+|+.+ ...++++-......
T Consensus 176 ~~c~~c~~~~~~~~~~~~~c~~-~g-vlg~~~~~~g-~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~~~c 252 (390)
T PRK07411 176 GPNYRDLYPEPPPPGMVPSCAE-GG-VLGILPGIIG-VIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRPNPER 252 (390)
T ss_pred CCChHHhcCCCCCcccCCCCcc-CC-cCcchHHHHH-HHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccCCCCC
Confidence 5899999986432 3445666 67 8999999888 6888899888888643 23333211111100
Q ss_pred HHH--HHHHHHHH-----------hcCCCcccCHHHHHHHHhCCC-CeEEEEcCChhhHhhCCCCCccccccccccccCc
Q 008704 254 ATL--WIFYWWWT-----------YGGYSGDLSPKSTLELLRGKE-NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYL 319 (557)
Q Consensus 254 ~~l--~~l~~l~~-----------~~g~~g~ISpeea~elL~~~~-~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl 319 (557)
... ..-|=.+. .+.....|+++++.++++.+. +.+|||||++.||+.+|||||+ |+|+
T Consensus 253 ~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi--------niP~ 324 (390)
T PRK07411 253 PVIEKLIDYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV--------LVPL 324 (390)
T ss_pred CccccccchhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE--------EccH
Confidence 000 00000000 011224689999999996543 5799999999999999999998 8888
Q ss_pred ccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCce
Q 008704 320 PEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRI 399 (557)
Q Consensus 320 ~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV 399 (557)
.++..... .+.+ +..+++++||+||++|.||..+++.|+.+||++ +.|+||+.+|++...|.
T Consensus 325 ~~l~~~~~-----~~~l------------~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 325 PDIENGPG-----VEKV------------KELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred HHhhcccc-----hHHH------------hhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 66543110 0011 123578999999999999999999999999975 68999999999876654
No 33
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.66 E-value=2.5e-16 Score=141.84 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=79.0
Q ss_pred ccCHHHHHHHHhCC-----CCeEEEEcCChhhHhhCCCCCccccccccccccCcc-cccchHHhhhcCchhhhhHHHHHH
Q 008704 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-EVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 271 ~ISpeea~elL~~~-----~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~-eL~~~l~~ll~n~~~L~~ll~alG 344 (557)
.|+++++.+++.++ ++++|||||++.||..||||||+ |+|+. .+........ .+++
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~--------~ip~~~~l~~~~~~~~----------~~~~ 64 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAV--------NLSTKDELEEFFLDKP----------GVAS 64 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCE--------eCCcHHHHHHHHHHhh----------cccc
Confidence 58999999999653 46899999999999999999998 88875 3332211000 0011
Q ss_pred HhhhcccCCCCeEEEEeC-CCcHHHHHHHHHHHc------------cCCcEEEecccHHHHH
Q 008704 345 IRNLKIVQDRSKVIVMDA-DGTRSKGIARSLRKL------------GVMRAFLVQGGFQSWV 393 (557)
Q Consensus 345 I~~LK~~~kd~~VVVyC~-sG~RS~~AA~~L~~l------------Gy~nV~vLdGG~~aWk 393 (557)
.+++++|||||+ +|.||..+++.|+.. ||++||+|+|||.+|.
T Consensus 65 ------~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 65 ------KKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred ------cCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 268999999997 999999999999985 9999999999999984
No 34
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.66 E-value=2.7e-16 Score=166.45 Aligned_cols=107 Identities=27% Similarity=0.374 Sum_probs=89.8
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK 349 (557)
..|+++++.+++++ +.+|||+|++.||..||||||+ |+|+.++....... +
T Consensus 3 ~~is~~el~~~l~~--~~~ivDvR~~~e~~~ghIpgAi--------~ip~~~l~~~~~~~--------------~----- 53 (376)
T PRK08762 3 REISPAEARARAAQ--GAVLIDVREAHERASGQAEGAL--------RIPRGFLELRIETH--------------L----- 53 (376)
T ss_pred ceeCHHHHHHHHhC--CCEEEECCCHHHHhCCcCCCCE--------ECCHHHHHHHHhhh--------------c-----
Confidence 35899999999953 5899999999999999999998 88876543322211 1
Q ss_pred ccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccCCcc
Q 008704 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSET 406 (557)
Q Consensus 350 ~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~~~~ 406 (557)
.+++++||+||++|.||..+++.|+.+||++|++|+||+.+|++.|+|++......
T Consensus 54 -~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~s 109 (376)
T PRK08762 54 -PDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRLLT 109 (376)
T ss_pred -CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccCCC
Confidence 15789999999999999999999999999999999999999999999998754433
No 35
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.65 E-value=3e-16 Score=134.08 Aligned_cols=87 Identities=24% Similarity=0.284 Sum_probs=69.8
Q ss_pred CCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCC
Q 008704 284 KENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDAD 363 (557)
Q Consensus 284 ~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~s 363 (557)
+++.+|||+|++.+|..+|||||+ |+|+..+..... .+ ..++. .+++++||+||++
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~--------~ip~~~~~~~~~-------~~----~~~~~-----~~~~~~ivv~c~~ 65 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKR--------SIPGAALVLRSQ-------EL----QALEA-----PGRATRYVLTCDG 65 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcE--------eCCHHHhcCCHH-------HH----HHhhc-----CCCCCCEEEEeCC
Confidence 457899999999999999999998 888654432111 11 11111 3678899999999
Q ss_pred CcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 364 GTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 364 G~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
|.++..+++.|+..||++|++|+||+.+|++
T Consensus 66 g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 66 SLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred hHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999999999999999999999999999963
No 36
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.65 E-value=2.5e-16 Score=176.26 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=100.6
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCccccc---chHHhhhcCchhhhhHHHHHHHh
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVG---GSVKKLLRGGRELDDTLTAAVIR 346 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~---~~l~~ll~n~~~L~~ll~alGI~ 346 (557)
-.|+++++.+++. +++++|||+|++++|..||||||+ ++|+.... .....++++++++++.+..+||
T Consensus 9 ~lIs~~eL~~~l~-~~~vvIIDvR~~~eY~~GHIPGAv--------~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI- 78 (610)
T PRK09629 9 LVIEPNDLLERLD-APELILVDLTSSARYEAGHIRGAR--------FVDPKRTQLGKPPAPGLLPDTADLEQLFGELGH- 78 (610)
T ss_pred ceecHHHHHHHhc-CCCEEEEECCChHHHHhCCCCCcE--------EcChhHhhccCCCCCCCCCCHHHHHHHHHHcCC-
Confidence 3589999999995 567999999999999999999998 66543211 1123456777889999999998
Q ss_pred hhcccCCCCeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccC
Q 008704 347 NLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELK 403 (557)
Q Consensus 347 ~LK~~~kd~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~ 403 (557)
+++++||+||++|. ++.+++|.|+.+||++|++|+||+.+|+.+|+|+++..
T Consensus 79 -----~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~ 131 (610)
T PRK09629 79 -----NPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV 131 (610)
T ss_pred -----CCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence 68999999999875 88899999999999999999999999999999997754
No 37
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.6e-16 Score=134.73 Aligned_cols=96 Identities=31% Similarity=0.493 Sum_probs=80.6
Q ss_pred HHHHhCCCCeEEEEcCChhhHhhCCCCC-ccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCe
Q 008704 278 LELLRGKENAVLIDVRHEDLRERDGIPD-LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 278 ~elL~~~~~avLIDVRs~~Ey~~GHIPG-A~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~ 356 (557)
...+...++.+|||||++.||..+|||| +. ++|+.++........ .+++++
T Consensus 12 ~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~--------~ip~~~~~~~~~~~~--------------------~~~~~~ 63 (110)
T COG0607 12 AALLLAGEDAVLLDVREPEEYERGHIPGAAI--------NIPLSELKAAENLLE--------------------LPDDDP 63 (110)
T ss_pred HHHhhccCCCEEEeccChhHhhhcCCCccee--------eeecccchhhhcccc--------------------cCCCCe
Confidence 3334345689999999999999999999 87 899877655322110 158999
Q ss_pred EEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCceec
Q 008704 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 357 VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~ 401 (557)
+|+||++|.||..++..|+.+||++++++.||+.+|...++|+..
T Consensus 64 ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 64 IVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred EEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999875
No 38
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.65 E-value=2.3e-16 Score=140.70 Aligned_cols=103 Identities=26% Similarity=0.332 Sum_probs=81.0
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHh-hCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRE-RDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~-~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~ 350 (557)
|+++++.++++++++.++||||++.||+ .||||||+ |+|+.++.... .+..... .+.. .
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~--------~ip~~~~~~~~----~~~~~~~-~l~~-------~ 60 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAV--------HVAWQVYPDME----INPNFLA-ELEE-------K 60 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCce--------ecchhhccccc----cCHHHHH-HHHh-------h
Confidence 6899999999765679999999999999 99999998 88876543210 0011111 1111 1
Q ss_pred cCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
.+++++||+||++|.+|..+++.|+.+||++++.|.|||.+|+.
T Consensus 61 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 25789999999999999999999999999999999999999975
No 39
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.65 E-value=3e-16 Score=133.87 Aligned_cols=84 Identities=26% Similarity=0.351 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeC
Q 008704 283 GKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDA 362 (557)
Q Consensus 283 ~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~ 362 (557)
++++++|||+|++.||..+|||||+ |+|+..+...... .+ .+++++||+||+
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~--------~ip~~~~~~~~~~---------------~~-----~~~~~~ivl~c~ 58 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAA--------NLPLSRLELDAWV---------------RI-----PRRDTPIVVYGE 58 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCe--------eCCHHHHHhhhHh---------------hC-----CCCCCeEEEEeC
Confidence 4567999999999999999999998 8887654321100 01 135889999999
Q ss_pred CCcH--HHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 363 DGTR--SKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 363 sG~R--S~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
+|.+ |..+++.|++.||++|++|+||+.+|++
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 9986 6899999999999999999999999973
No 40
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.62 E-value=2e-15 Score=133.02 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=78.7
Q ss_pred cccCHHHHHHHHhCC-CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhh
Q 008704 270 GDLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNL 348 (557)
Q Consensus 270 g~ISpeea~elL~~~-~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~L 348 (557)
..|+++++.+++..+ ++.+|||||++ ||..+|||||+ ++|+.++......+ ....++
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~--------~ip~~~l~~~~~~~----------~~~~~~--- 59 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSW--------HYPSTRFKAQLNQL----------VQLLSG--- 59 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCE--------ecCHHHHhhCHHHH----------HHHHhc---
Confidence 358999999998654 46789999999 99999999998 88887654332221 112222
Q ss_pred cccCCCCeEEEEeC-CCcHHHHHHHHHHH--------ccCCcEEEecccHHHHHHc
Q 008704 349 KIVQDRSKVIVMDA-DGTRSKGIARSLRK--------LGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 349 K~~~kd~~VVVyC~-sG~RS~~AA~~L~~--------lGy~nV~vLdGG~~aWkaa 395 (557)
+++++|||||. +|.|+..++..|.+ .||++|++|+||+.+|++.
T Consensus 60 ---~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 60 ---SKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred ---CCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 46789999998 66789888887754 4999999999999999864
No 41
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.58 E-value=3.3e-15 Score=123.02 Aligned_cols=88 Identities=30% Similarity=0.450 Sum_probs=72.2
Q ss_pred HHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCe
Q 008704 277 TLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSK 356 (557)
Q Consensus 277 a~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~ 356 (557)
+.+++. .++..|||+|++.+|..+|||||. ++|...+.... ...+ .+++++
T Consensus 2 ~~~~~~-~~~~~iiD~R~~~~~~~~~i~ga~--------~~~~~~~~~~~--------------~~~~------~~~~~~ 52 (89)
T cd00158 2 LKELLD-DEDAVLLDVREPEEYAAGHIPGAI--------NIPLSELEERA--------------ALLE------LDKDKP 52 (89)
T ss_pred hHHHhc-CCCeEEEECCCHHHHhccccCCCE--------ecchHHHhhHH--------------Hhhc------cCCCCe
Confidence 345553 568999999999999999999998 88875543321 0011 368899
Q ss_pred EEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHH
Q 008704 357 VIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 357 VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWk 393 (557)
||+||..|.++..+++.|+..||.++++|+||+.+|+
T Consensus 53 vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 53 IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9999999999999999999999999999999999995
No 42
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.58 E-value=6.3e-16 Score=162.87 Aligned_cols=168 Identities=21% Similarity=0.265 Sum_probs=116.3
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCceehhhhhhhHHHHHHHHHHHH
Q 008704 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (557)
Q Consensus 189 G~~~~~lp~~i~~--~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~~~--~~pVv~~~v~vg~~~~l~~l~~l~~ 264 (557)
|||++|++|+..+ ....|.. +| |++|.-+..+ +.++.|.++-.+|+.+ .+.++. ++....-+-. +.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~c~~-~g-v~g~~~~~~g-~~~a~e~ik~l~g~~~~l~~~l~~----~d~~~~~~~~-~~~~ 237 (355)
T PRK05597 166 GPIYEDLFPTPPPPGSVPSCSQ-AG-VLGPVVGVVG-SAMAMEALKLITGVGTPLIGKLGY----YDSLDGTWEY-IPVV 237 (355)
T ss_pred CCCHHHhCCCCCCccCCCCccc-cC-cchhHHHHHH-HHHHHHHHHHHhCCCCcCcCeEEE----EECCCCeEEE-Eecc
Confidence 5899999887542 2334555 66 8899888888 6788888888887643 333432 2211100000 0000
Q ss_pred hc------------------CCCcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchH
Q 008704 265 YG------------------GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV 326 (557)
Q Consensus 265 ~~------------------g~~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l 326 (557)
++ +....++++++.++. ++.+|||+|+++||+.+|||||+ |+|+.++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~IIDVR~~~ef~~ghIpgAi--------nip~~~l~~~~ 306 (355)
T PRK05597 238 GNPAVLERVRGSTPVHGISGGFGEVLDVPRVSALP---DGVTLIDVREPSEFAAYSIPGAH--------NVPLSAIREGA 306 (355)
T ss_pred CCCCCccccccccccccccCCcccccCHHHHHhcc---CCCEEEECCCHHHHccCcCCCCE--------EeCHHHhhhcc
Confidence 00 111246677777543 36899999999999999999998 89986654321
Q ss_pred HhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHc
Q 008704 327 KKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 327 ~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaa 395 (557)
... ..+++++||+||++|.||..+++.|+..||++|++|+||+.+|+++
T Consensus 307 ~~~--------------------~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 307 NPP--------------------SVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred ccc--------------------cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 100 1257889999999999999999999999999999999999999763
No 43
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.2e-15 Score=158.18 Aligned_cols=184 Identities=21% Similarity=0.264 Sum_probs=136.3
Q ss_pred eEEEee--cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC-CCCceehhhhhhhHHHHH
Q 008704 183 FVVYYY--GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP-NDPIVPFVVFLGTSATLW 257 (557)
Q Consensus 183 ~~~~~y--G~~~~~lp~~i~~--~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~~~-~~pVv~~~v~vg~~~~l~ 257 (557)
-+||-| ||||||++|++++ ++.+|.+ .| |++|+.+..+ +++++|.++-+.|+.+ -+|.++ ++-|..+-+.
T Consensus 196 LtvYny~~GPCYRClFP~Ppp~~~vt~C~d-gG-VlGpv~GviG-~mQALE~iKli~~~~~~~s~~ll--lfdg~~~~~r 270 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPPPEAVTNCAD-GG-VLGPVTGVIG-CMQALETIKLIAGIGESLSGRLL--LFDGLSGHFR 270 (427)
T ss_pred eEEeecCCCceeeecCCCCcChHHhccccc-Cc-eeecchhhhh-HHHHHHHHHHHHccCccCCcceE--EEecccceeE
Confidence 456666 8999999999998 9999999 77 9999999999 7999999999988663 355553 2223332211
Q ss_pred HHHHHHH------------------h------cCC----------CcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCC
Q 008704 258 IFYWWWT------------------Y------GGY----------SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGI 303 (557)
Q Consensus 258 ~l~~l~~------------------~------~g~----------~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHI 303 (557)
.+-++-+ | ..+ ..+||..++++++++.+..++||||++.||+..|+
T Consensus 271 ~irlR~r~~~C~~Cg~n~tit~~~dYe~fCg~~~~~~~~l~lL~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~l 350 (427)
T KOG2017|consen 271 TIRLRSRRPKCAVCGKNPTITSLIDYELFCGSSATDKCPLKLLEPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRL 350 (427)
T ss_pred EEEeccCCCCCcccCCCCccCcccchhcccCCccccccchhcCChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEec
Confidence 1111100 0 001 13688899999998778899999999999999999
Q ss_pred CCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCC-cE
Q 008704 304 PDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVM-RA 382 (557)
Q Consensus 304 PGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~-nV 382 (557)
|+|+ |||+.++.....+... | +......+|+++|+.|+.|..+++.|+...+. .|
T Consensus 351 P~av--------NIPL~~l~~~~~~~~~------------~----~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~v 406 (427)
T KOG2017|consen 351 PEAV--------NIPLKELRSRSGKKLQ------------G----DLNTESKDIFVICRRGNDSQRAVRILREKFPDSSV 406 (427)
T ss_pred cccc--------ccchhhhhhhhhhhhc------------c----cccccCCCEEEEeCCCCchHHHHHHHHhhCCchhh
Confidence 9999 9999887654431110 0 01135577999999999999999999976654 67
Q ss_pred EEecccHHHHHHc
Q 008704 383 FLVQGGFQSWVKE 395 (557)
Q Consensus 383 ~vLdGG~~aWkaa 395 (557)
+-+-||+.+|...
T Consensus 407 rDvigGl~~w~~~ 419 (427)
T KOG2017|consen 407 RDVIGGLKAWAAK 419 (427)
T ss_pred hhhhhHHHHHHHh
Confidence 7888999999864
No 44
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.8e-15 Score=152.18 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=99.3
Q ss_pred ccCHHHHHHHHhCC----CCeEEEEcCCh--hhHhhCCCCCccccccccccccCccccc-ch--HHhhhcCchhhhhHHH
Q 008704 271 DLSPKSTLELLRGK----ENAVLIDVRHE--DLRERDGIPDLRRGARFRYASVYLPEVG-GS--VKKLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISpeea~elL~~~----~~avLIDVRs~--~Ey~~GHIPGA~gav~~~~~nIPl~eL~-~~--l~~ll~n~~~L~~ll~ 341 (557)
.++++++.+.+.+. .++.+++.+.. .+|..+|||||+ .+++.... .. ..+++++++++.+++.
T Consensus 12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv--------~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAV--------FFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCE--------ecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 58999999988521 26677777666 899999999997 44443322 12 3678999999999999
Q ss_pred HHHHhhhcccCCCCeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccCCc
Q 008704 342 AAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKSE 405 (557)
Q Consensus 342 alGI~~LK~~~kd~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~~~ 405 (557)
++|| ..|.+||+|++.+. .|.+++|.|+.+|+++|++|+||+.+|+++|+|++...+.
T Consensus 84 ~~GI------~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~ 142 (285)
T COG2897 84 ELGI------RNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPE 142 (285)
T ss_pred HcCC------CCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCC
Confidence 9999 58999999997665 8899999999999999999999999999999999975543
No 45
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.56 E-value=1.1e-14 Score=128.62 Aligned_cols=98 Identities=18% Similarity=0.313 Sum_probs=74.1
Q ss_pred ccCHHHHHHHHhCC-----CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHH
Q 008704 271 DLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 271 ~ISpeea~elL~~~-----~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI 345 (557)
.|+++++.+++.++ ++.+|||||++ ||..+|||||+ |+|+..+...+...+ ..+..
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi--------~ip~~~~~~~~~~~~----------~~~~~ 63 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSI--------NLPAQSCYQTLPQVY----------ALFSL 63 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCce--------ecchhHHHHHHHHHH----------HHhhh
Confidence 58999999999754 46899999999 99999999998 899876554332221 11111
Q ss_pred hhhcccCCCCeEEEEeCC-CcHHHHHHHHHH----HccC--CcEEEecccHHHHH
Q 008704 346 RNLKIVQDRSKVIVMDAD-GTRSKGIARSLR----KLGV--MRAFLVQGGFQSWV 393 (557)
Q Consensus 346 ~~LK~~~kd~~VVVyC~s-G~RS~~AA~~L~----~lGy--~nV~vLdGG~~aWk 393 (557)
.+..+||+||.+ |.||..++..|. +.|| .++++|+||+.+|.
T Consensus 64 ------~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 64 ------AGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ------cCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 356789999997 578887776544 3475 78999999999996
No 46
>PRK01415 hypothetical protein; Validated
Probab=99.55 E-value=1.2e-14 Score=146.50 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=83.7
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK 349 (557)
..|+|+++.++++ +++++|||||++.||..||||||+ |+|+..+.+..... +. ..
T Consensus 112 ~~i~p~e~~~ll~-~~~~vvIDVRn~~E~~~Ghi~gAi--------nip~~~f~e~~~~~-------~~---------~~ 166 (247)
T PRK01415 112 EYIEPKDWDEFIT-KQDVIVIDTRNDYEVEVGTFKSAI--------NPNTKTFKQFPAWV-------QQ---------NQ 166 (247)
T ss_pred cccCHHHHHHHHh-CCCcEEEECCCHHHHhcCCcCCCC--------CCChHHHhhhHHHH-------hh---------hh
Confidence 3699999999996 578999999999999999999998 88876554311110 00 01
Q ss_pred ccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcC
Q 008704 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 350 ~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaG 396 (557)
..+++++|++||.+|.||..++..|+++||++||.|+||+.+|....
T Consensus 167 ~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 13688999999999999999999999999999999999999999754
No 47
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.55 E-value=1.2e-14 Score=127.73 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=68.2
Q ss_pred CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCC
Q 008704 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG 364 (557)
....+||+|+++||..+|||||+ |+|+.++...+.+.. .+++++||+||.+|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAi--------nip~~~l~~~l~~~~--------------------~~~~~~vvlyC~~G 68 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAI--------NIPLKEIKEHIATAV--------------------PDKNDTVKLYCNAG 68 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCE--------ECCHHHHHHHHHHhC--------------------CCCCCeEEEEeCCC
Confidence 35689999999999999999998 899876644332211 14678999999999
Q ss_pred cHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
.||..++..|+.+||++++++ ||+.+|..
T Consensus 69 ~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 69 RQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999986 99999975
No 48
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.53 E-value=1.8e-14 Score=127.52 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=67.1
Q ss_pred CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCC
Q 008704 285 ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADG 364 (557)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG 364 (557)
..-+|||+|+++||+.+|||||+ |+|+.++...+.. ++ .+++++||+||++|
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAi--------niP~~~l~~~l~~--------------l~------~~~~~~IVlyC~~G 70 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAI--------NIPLKEVKERIAT--------------AV------PDKNDTVKLYCNAG 70 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccE--------ECCHHHHHHHHHh--------------cC------CCCCCeEEEEeCCC
Confidence 34579999999999999999998 8998655433221 11 14678899999999
Q ss_pred cHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 365 TRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 365 ~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
.||..+++.|.++||+++++ .||+.+|..
T Consensus 71 ~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 71 RQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred hHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999987 699999974
No 49
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.53 E-value=3.3e-14 Score=144.13 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=82.5
Q ss_pred cccCHHHHHHHHhCC-----CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHH
Q 008704 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISpeea~elL~~~-----~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alG 344 (557)
..++++++.+++++. ++.+|||||++.||+.||||||+ |+|+.++.....++. ..
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAi--------niPl~~f~~~~~~l~-------~~----- 169 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGAL--------DYRIDKFTEFPEALA-------AH----- 169 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCE--------eCChhHhhhhHHHHH-------hh-----
Confidence 469999999988642 34899999999999999999998 899876644222111 00
Q ss_pred HhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHc
Q 008704 345 IRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 345 I~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaa 395 (557)
+ ...++++|++||.+|.|+..++..|++.||++|+.|+||+.+|.+.
T Consensus 170 ---~-~~~kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 170 ---R-ADLAGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred ---h-hhcCCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 0 0126889999999999999999999999999999999999999873
No 50
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.50 E-value=7.4e-14 Score=145.27 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=82.7
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK 349 (557)
..++++++.+++. +++.+|||||++.||..||||||+ |+|+..+.+....+ . ..++
T Consensus 112 ~~is~~el~~~l~-~~~~vlIDVR~~~E~~~GhI~GAi--------~ip~~~~~~~~~~l-------~---~~~~----- 167 (314)
T PRK00142 112 TYLKPKEVNELLD-DPDVVFIDMRNDYEYEIGHFENAI--------EPDIETFREFPPWV-------E---ENLD----- 167 (314)
T ss_pred cccCHHHHHHHhc-CCCeEEEECCCHHHHhcCcCCCCE--------eCCHHHhhhhHHHH-------H---HhcC-----
Confidence 4699999999995 567999999999999999999998 88886654322111 0 0111
Q ss_pred ccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 350 ~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
..++++||+||.+|.|+..++..|+.+||++|+.|+||+.+|..
T Consensus 168 -~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~ 211 (314)
T PRK00142 168 -PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGE 211 (314)
T ss_pred -CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHH
Confidence 24789999999999999999999999999999999999999986
No 51
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.48 E-value=2.3e-14 Score=151.98 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=113.6
Q ss_pred cccCCCCCccHHH--HHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCC--CCCceehhhhhhhHHHHHHHHHHHH
Q 008704 189 GTTKESLPPEIRD--ALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDP--NDPIVPFVVFLGTSATLWIFYWWWT 264 (557)
Q Consensus 189 G~~~~~lp~~i~~--~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~~~--~~pVv~~~v~vg~~~~l~~l~~l~~ 264 (557)
++|++|++|+..+ .+..|.. +| |++|..+..+ +.++.|.++-.+|+.+ ...++. ++....-+.. +.+.
T Consensus 182 ~~~~~~l~~~~~~~~~~~~c~~-~g-vlg~~~~~ig-~~~a~eaik~l~g~g~~l~g~ll~----~d~~~~~~~~-~~~~ 253 (370)
T PRK05600 182 GVGLRDLFPEQPSGDSIPDCAT-AG-VLGATTAVIG-ALMATEAIKFLTGIGDVQPGTVLS----YDALTATTRS-FRVG 253 (370)
T ss_pred CCCcHhhCCCCCccccCCCCcc-CC-cchhHHHHHH-HHHHHHHHHHHhCCCCCCcCcEEE----EECCCCEEEE-EEec
Confidence 5799999987532 2233533 56 7899888888 6788888888888743 244442 2211110000 0010
Q ss_pred hc-----------CC-CcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCC---CccccccccccccCcccccchHHhh
Q 008704 265 YG-----------GY-SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIP---DLRRGARFRYASVYLPEVGGSVKKL 329 (557)
Q Consensus 265 ~~-----------g~-~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIP---GA~gav~~~~~nIPl~eL~~~l~~l 329 (557)
+. .| ...++++++.+++.+ ++++|||||++.||+.+||| ||+ |+|+.++.......
T Consensus 254 ~~~~c~~~~~~~~~~~~~~~~~~el~~~l~~-~~~~lIDVR~~~E~~~ghI~~~~gAi--------nIPl~~l~~~~~~~ 324 (370)
T PRK05600 254 ADPARPLVTRLRPSYEAARTDTTSLIDATLN-GSATLLDVREPHEVLLKDLPEGGASL--------KLPLSAITDDADIL 324 (370)
T ss_pred CCCCCCccccccCcchhcccCHHHHHHHHhc-CCeEEEECCCHHHhhhccCCCCCccE--------eCcHHHhhcchhhh
Confidence 00 11 125899999999964 46799999999999999999 477 89987774321000
Q ss_pred hcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCc-EEEecccHH
Q 008704 330 LRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMR-AFLVQGGFQ 390 (557)
Q Consensus 330 l~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~n-V~vLdGG~~ 390 (557)
+. +...+++ +|||||++|.||..++..|+++||++ |++|+||+.
T Consensus 325 ----~~------------l~~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 325 ----HA------------LSPIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ----hh------------ccccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 00 0112344 89999999999999999999999986 999999985
No 52
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.41 E-value=7e-13 Score=139.66 Aligned_cols=112 Identities=17% Similarity=0.214 Sum_probs=80.0
Q ss_pred CHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccch-----------------HHhhhcCchh
Q 008704 273 SPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS-----------------VKKLLRGGRE 335 (557)
Q Consensus 273 Speea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~-----------------l~~ll~n~~~ 335 (557)
...++.+++. ++.+|||||+|.||..||||||+ |+|+....+. ++..+.+++
T Consensus 4 ~~~~~~~~~~--~~~~lIDVRsp~Ef~~ghIpgAi--------niPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~- 72 (345)
T PRK11784 4 DAQDFRALFL--NDTPLIDVRSPIEFAEGHIPGAI--------NLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGN- 72 (345)
T ss_pred cHHHHHHHHh--CCCEEEECCCHHHHhcCCCCCee--------eCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchh-
Confidence 4567777763 47899999999999999999998 8888432211 111122111
Q ss_pred hhhHHHH-HHHhhhccc-CCCCeEEEEe-CCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCceec
Q 008704 336 LDDTLTA-AVIRNLKIV-QDRSKVIVMD-ADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 336 L~~ll~a-lGI~~LK~~-~kd~~VVVyC-~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~ 401 (557)
+.+.+.. ++. . +++++||+|| ++|.||..+++.|..+|| ++++|+||+.+|++.+++...
T Consensus 73 l~~~~~~~~~~-----~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~ 135 (345)
T PRK11784 73 IAAHREEAWAD-----FPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLE 135 (345)
T ss_pred HHHHHHHHHHh-----cccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHh
Confidence 1111111 111 2 2788999999 578999999999999999 699999999999998875544
No 53
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.41 E-value=1.1e-12 Score=118.72 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=75.5
Q ss_pred ccCHHHHHHHHhCC-CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchH--------HhhhcCchhhhhHHH
Q 008704 271 DLSPKSTLELLRGK-ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSV--------KKLLRGGRELDDTLT 341 (557)
Q Consensus 271 ~ISpeea~elL~~~-~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l--------~~ll~n~~~L~~ll~ 341 (557)
.|+|+++.++++.+ ++.+|||+|++.+|..+|||||+ ++|+..+.... ..++.+++.. .
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 68 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAV--------NVCCPTILRRRLQGGKILLQQLLSCPEDR----D 68 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcE--------ecChHHHHHHhhcccchhhhhhcCCHHHH----H
Confidence 37999999999654 57999999999999999999998 77775432110 0011111111 1
Q ss_pred HHHHhhhcccCCCCeEEEEeCCCcH---------HHHHHHHHHH--ccCCcEEEecccHHHHHHcCCc
Q 008704 342 AAVIRNLKIVQDRSKVIVMDADGTR---------SKGIARSLRK--LGVMRAFLVQGGFQSWVKEGLR 398 (557)
Q Consensus 342 alGI~~LK~~~kd~~VVVyC~sG~R---------S~~AA~~L~~--lGy~nV~vLdGG~~aWkaaGLP 398 (557)
.+ .. .++++||+||.++.+ +..+++.|.. .|+.+|++|+||+.+|++ .+|
T Consensus 69 ~l-----~~-~~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~-~~p 129 (132)
T cd01446 69 RL-----RR-GESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS-EFP 129 (132)
T ss_pred HH-----hc-CCCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh-hCc
Confidence 11 11 257899999998865 5556666666 366899999999999976 344
No 54
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.36 E-value=2e-12 Score=134.57 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=72.5
Q ss_pred CeEEEEcCChhhHhhCCCCCccccccccccccCcccccch--HHhhhcCc--------------hhhhhHHHHHHHhhhc
Q 008704 286 NAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--VKKLLRGG--------------RELDDTLTAAVIRNLK 349 (557)
Q Consensus 286 ~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~--l~~ll~n~--------------~~L~~ll~alGI~~LK 349 (557)
+..|||||+|.||..||||||+ |+|+....+. ++...+.. ..+...+.++ ++
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAi--------niPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~----~~ 69 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAI--------NLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQW----RA 69 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCE--------ecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHH----Hh
Confidence 4689999999999999999999 8998432211 11100000 0111111111 01
Q ss_pred ccCCCCeEEEEeC-CCcHHHHHHHHHHHccCCcEEEecccHHHHHHcCCceecc
Q 008704 350 IVQDRSKVIVMDA-DGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKEL 402 (557)
Q Consensus 350 ~~~kd~~VVVyC~-sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~ 402 (557)
..+++.+||+||. +|.||..+++.|+.+|| ++++|+||+.+|+..+++....
T Consensus 70 ~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~ 122 (311)
T TIGR03167 70 FADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE 122 (311)
T ss_pred hcCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence 1245556999994 78999999999999999 7999999999999999877653
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.98 E-value=1.3e-09 Score=111.37 Aligned_cols=123 Identities=19% Similarity=0.316 Sum_probs=97.2
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcC---------ChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHH
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVR---------HEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVR---------s~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll 340 (557)
..++++.+.+++.+ .+.+|||.- ...||..-|||||. +++...+... ....+.+++.++.+++-.
T Consensus 5 ~iv~~~~v~~~~~~-~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~---~fdld~~~~~--s~~~~~~lp~~e~Fa~y~ 78 (286)
T KOG1529|consen 5 SIVSVKWVMENLGN-HGLRILDASWYFPPLRRIAEFEFLERHIPGAS---HFDLDIISYP--SSPYRHMLPTAEHFAEYA 78 (286)
T ss_pred cccChHHHHHhCcC-CCeEEEeeeeecCchhhhhhhhhhhccCCCce---eeeccccccC--CCcccccCccHHHHHHHH
Confidence 35788888888864 679999983 34677888999874 5544443221 123455666667778888
Q ss_pred HHHHHhhhcccCCCCeEEEEeC--CCc-HHHHHHHHHHHccCCcEEEecccHHHHHHcCCceeccCC
Q 008704 341 TAAVIRNLKIVQDRSKVIVMDA--DGT-RSKGIARSLRKLGVMRAFLVQGGFQSWVKEGLRIKELKS 404 (557)
Q Consensus 341 ~alGI~~LK~~~kd~~VVVyC~--sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaGLPV~~~~~ 404 (557)
+.+|+ ++++.+|||++ .|+ .|.+++|.++..||++|++|+||+.+|+++|+|+...+.
T Consensus 79 ~~lGi------~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~ 139 (286)
T KOG1529|consen 79 SRLGV------DNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV 139 (286)
T ss_pred HhcCC------CCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence 88998 68889999999 787 788999999999999999999999999999999987664
No 56
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.96 E-value=1.1e-09 Score=120.18 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCeEEEEcCChhhHhhCCCCC----ccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEE
Q 008704 285 ENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVM 360 (557)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPG----A~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVy 360 (557)
++++|||||+++||+.+|||| |+ |+|+.++..... ..++++++|+|
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~--------niP~~~l~~~~~----------------------~l~~~~~iivy 455 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVK--------SLPFYKLSTQFG----------------------DLDQSKTYLLY 455 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEE--------ECCHHHHHHHHh----------------------hcCCCCeEEEE
Confidence 578999999999999999999 87 899866543221 12578899999
Q ss_pred eCCCcHHHHHHHHHHHccCCcEEEecc
Q 008704 361 DADGTRSKGIARSLRKLGVMRAFLVQG 387 (557)
Q Consensus 361 C~sG~RS~~AA~~L~~lGy~nV~vLdG 387 (557)
|++|.||..++..|+.+||++|++|.+
T Consensus 456 C~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 456 CDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 999999999999999999999998864
No 57
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.91 E-value=3.5e-09 Score=108.32 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhcCCCCCCCceehhhhhhh--HHHHHH--HHHHHHhcCCC-----------------------------c
Q 008704 224 VSVAIEGLERSLGFDPNDPIVPFVVFLGT--SATLWI--FYWWWTYGGYS-----------------------------G 270 (557)
Q Consensus 224 ~~~~iE~l~~~lG~~~~~pVv~~~v~vg~--~~~l~~--l~~l~~~~g~~-----------------------------g 270 (557)
.+..|+.-.+.+|+++++.+|+ |+. .+.+++ +||.|+.-|+. +
T Consensus 70 ~~e~Fa~y~~~lGi~n~d~vVi----Yd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~ 145 (286)
T KOG1529|consen 70 TAEHFAEYASRLGVDNGDHVVI----YDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVETPYSP 145 (286)
T ss_pred cHHHHHHHHHhcCCCCCCeEEE----EcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccccCCCCC
Confidence 3556778888999999999974 544 444433 56665432210 0
Q ss_pred -----ccCHHHHHHHH--h----CCCCeEEEEcCChhhH-----------hhCCCCCccccccccccccCcccccchHHh
Q 008704 271 -----DLSPKSTLELL--R----GKENAVLIDVRHEDLR-----------ERDGIPDLRRGARFRYASVYLPEVGGSVKK 328 (557)
Q Consensus 271 -----~ISpeea~elL--~----~~~~avLIDVRs~~Ey-----------~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ 328 (557)
.++...+..+- . ...++..+|.|...+| ..||||||+ |+|+.++...-..
T Consensus 146 ~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~--------n~P~~~~~~~~g~ 217 (286)
T KOG1529|consen 146 IVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAI--------NFPFDEVLDPDGF 217 (286)
T ss_pred ccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcc--------cCChHHhcccccc
Confidence 11111111111 0 1246899999998888 347999999 9999887655443
Q ss_pred hhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 329 LLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 329 ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
+ +.++++...+...|+ ..++++|+-|..|..+...+-.|.+.| .++.+|+|+|.+|.-
T Consensus 218 ~-k~~edl~~~f~~~~l------~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 218 I-KPAEDLKHLFAQKGL------KLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred c-CCHHHHHHHHHhcCc------ccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 3 337788888988888 468999999999999999999999999 799999999999985
No 58
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.72 E-value=1.4e-08 Score=104.62 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=79.2
Q ss_pred ccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcc
Q 008704 271 DLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKI 350 (557)
Q Consensus 271 ~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~ 350 (557)
-|+|+++.+++. +++.++||.|..-||.-||-.||+ +.+...|.+...+...+ +.
T Consensus 114 yl~p~~wn~~l~-D~~~vviDtRN~YE~~iG~F~gAv--------~p~~~tFrefP~~v~~~----------------~~ 168 (308)
T COG1054 114 YLSPKDWNELLS-DPDVVVIDTRNDYEVAIGHFEGAV--------EPDIETFREFPAWVEEN----------------LD 168 (308)
T ss_pred ccCHHHHHHHhc-CCCeEEEEcCcceeEeeeeecCcc--------CCChhhhhhhHHHHHHH----------------HH
Confidence 489999999995 688999999999999999999998 55554444332221110 01
Q ss_pred cCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHH
Q 008704 351 VQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 351 ~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
.-++++|+.||-+|.|-..+...|...||++||.|+||+-.+..
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhh
Confidence 13677999999999999999999999999999999999987764
No 59
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=2.3e-07 Score=96.79 Aligned_cols=103 Identities=22% Similarity=0.283 Sum_probs=73.7
Q ss_pred cccCHHHHHHHHhCC-----CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHH
Q 008704 270 GDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAV 344 (557)
Q Consensus 270 g~ISpeea~elL~~~-----~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alG 344 (557)
..|||+.+..++++. ..++|||+|-|-||..|||+||+ |++..+...... .... +
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgav--------nl~~~~~~~~~f---~~~~---------~ 215 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAV--------NLYSKELLQDFF---LLKD---------G 215 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccce--------ecccHhhhhhhh---cccc---------c
Confidence 479999999999642 23779999999999999999998 777644332211 1000 0
Q ss_pred HhhhcccCCCCeEEEEeCCCc-HHHHHHHHHHH------------ccCCcEEEecccHHHHHHc
Q 008704 345 IRNLKIVQDRSKVIVMDADGT-RSKGIARSLRK------------LGVMRAFLVQGGFQSWVKE 395 (557)
Q Consensus 345 I~~LK~~~kd~~VVVyC~sG~-RS~~AA~~L~~------------lGy~nV~vLdGG~~aWkaa 395 (557)
. +...+...+||||..-. |...+|+.|+. +-|..+|+|+|||..|-..
T Consensus 216 ~---~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 216 V---PSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred c---ccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 0 00123467899998654 88889998883 3456899999999999864
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.19 E-value=0.00064 Score=71.26 Aligned_cols=99 Identities=17% Similarity=0.276 Sum_probs=69.8
Q ss_pred CcccCHHHHHHHHhCC-----CCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHH
Q 008704 269 SGDLSPKSTLELLRGK-----ENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 269 ~g~ISpeea~elL~~~-----~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~al 343 (557)
..+|+++.+..++++. -+.+|||.|-+-||..|||-+|+ ||.-.. .+.-.+
T Consensus 241 ~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaV--------Ni~s~~---~l~~~F------------- 296 (427)
T COG5105 241 IQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAV--------NISSTK---KLGLLF------------- 296 (427)
T ss_pred hhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeee--------ecchHH---HHHHHH-------------
Confidence 3689999999999643 24789999999999999999987 654311 111111
Q ss_pred HHhhhcccCCCCeEEEEeCCC-cHHHHHHHHHHHcc------------CCcEEEecccHHHHHH
Q 008704 344 VIRNLKIVQDRSKVIVMDADG-TRSKGIARSLRKLG------------VMRAFLVQGGFQSWVK 394 (557)
Q Consensus 344 GI~~LK~~~kd~~VVVyC~sG-~RS~~AA~~L~~lG------------y~nV~vLdGG~~aWka 394 (557)
+. |....-+-+||+|... +|+...|.-|+.+- |+.||+|+||+...-.
T Consensus 297 -~h--kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 -RH--KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred -Hh--ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 10 1112356799999864 59999998886532 4589999999987654
No 61
>COG2603 Predicted ATPase [General function prediction only]
Probab=93.34 E-value=0.13 Score=53.95 Aligned_cols=102 Identities=25% Similarity=0.225 Sum_probs=58.9
Q ss_pred HHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcc-c-ccchHHhhhc---------------Cchhhhh
Q 008704 276 STLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLP-E-VGGSVKKLLR---------------GGRELDD 338 (557)
Q Consensus 276 ea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~-e-L~~~l~~ll~---------------n~~~L~~ 338 (557)
+...++. .+..|||||.|-||..||.|++. |.|.- + -...+..-.+ -.+-..+
T Consensus 7 ~~~~~~~--~~~~lid~rap~ef~~g~~~ia~--------nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~ 76 (334)
T COG2603 7 DYRALLL--ADTPLIDVRAPIEFENGAMPIAI--------NLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQ 76 (334)
T ss_pred HHHHHHh--cCCceeeccchHHHhcccchhhh--------ccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHH
Confidence 3444443 36789999999999999999987 66641 1 0000100000 0000111
Q ss_pred HHHHHHHhhhcccCCCCeEEEEeCCCc-HHHHHHHHH-HHccCCcEEEecccHHHHH
Q 008704 339 TLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGIARSL-RKLGVMRAFLVQGGFQSWV 393 (557)
Q Consensus 339 ll~alGI~~LK~~~kd~~VVVyC~sG~-RS~~AA~~L-~~lGy~nV~vLdGG~~aWk 393 (557)
++.+. |....+.++-++|..|. ||...+..| ...|++ .--+.||+.+.+
T Consensus 77 ~l~as-----k~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr 127 (334)
T COG2603 77 RLEAS-----KAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR 127 (334)
T ss_pred HHHHH-----HHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence 12221 12234566777787655 999999999 777874 334569987544
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=93.23 E-value=0.17 Score=46.73 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=58.0
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCcc------ccccccccccCcccccchHHhhhcCchhhhhHHHHH
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLR------RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~------gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~al 343 (557)
+.++++++..+.+ ..=-.+||.|+..|... -|... ....+.+.++|+.. ..+ +++.+......+
T Consensus 13 ~qlt~~d~~~L~~-~GiktVIdlR~~~E~~~--~p~~~~~~~~a~~~gl~y~~iPv~~--~~~-----~~~~v~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAAQ-LGFKTVINNRPDREEES--QPDFAQIKAAAEAAGVTYHHQPVTA--GDI-----TPDDVETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHHH-CCCcEEEECCCCCCCCC--CCCHHHHHHHHHHCCCeEEEeecCC--CCC-----CHHHHHHHHHHH
Confidence 5789999988654 33467999999877432 22210 01123444666531 100 112222211111
Q ss_pred HHhhhcccCCCCeEEEEeCCCcHHHHHHHHH-HHccCCcEEEecccHHHHHHcCCceec
Q 008704 344 VIRNLKIVQDRSKVIVMDADGTRSKGIARSL-RKLGVMRAFLVQGGFQSWVKEGLRIKE 401 (557)
Q Consensus 344 GI~~LK~~~kd~~VVVyC~sG~RS~~AA~~L-~~lGy~nV~vLdGG~~aWkaaGLPV~~ 401 (557)
. ..+.+|++||.+|.|+..++..+ ...|...--+ +..=++.|+.++.
T Consensus 83 ~-------~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i----~~~~~~~G~~~~~ 130 (135)
T TIGR01244 83 G-------AAEGPVLAYCRSGTRSSLLWGFRQAAEGVPVEEI----VRRAQAAGYDLSN 130 (135)
T ss_pred H-------hCCCCEEEEcCCChHHHHHHHHHHHHcCCCHHHH----HHHHHHcCCCccc
Confidence 1 24579999999999987766543 3345432111 1223556665553
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.03 E-value=0.11 Score=47.01 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=40.3
Q ss_pred CcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCc------cccccccccccCcccccchHHhhhcCchhhhhHHHH
Q 008704 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTA 342 (557)
Q Consensus 269 ~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA------~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~a 342 (557)
.+.++++++.++.+. .=-.||+.|+..|-. +-|.. ..+.-+.|.++|+..- .+ +++.+++....
T Consensus 12 s~Q~~~~d~~~la~~-GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~-----~~~~v~~f~~~ 81 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQ-GFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVDGG--AI-----TEEDVEAFADA 81 (110)
T ss_dssp ECS--HHHHHHHHHC-T--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE----TT--T-------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC-CCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecCCC--CC-----CHHHHHHHHHH
Confidence 367999999988763 335799999876531 22221 1122234556776321 11 01122221111
Q ss_pred HHHhhhcccCCCCeEEEEeCCCcHHHHHHHH
Q 008704 343 AVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 343 lGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~ 373 (557)
+. ...++|++||++|.|+...|.+
T Consensus 82 l~-------~~~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 82 LE-------SLPKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp HH-------TTTTSEEEE-SCSHHHHHHHHH
T ss_pred HH-------hCCCCEEEECCCChhHHHHHHH
Confidence 11 2356999999999999666543
No 64
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=86.37 E-value=2.6 Score=39.68 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=44.5
Q ss_pred CcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCC---CCCccccccccccccCccc--------cc--------------
Q 008704 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDG---IPDLRRGARFRYASVYLPE--------VG-------------- 323 (557)
Q Consensus 269 ~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GH---IPGA~gav~~~~~nIPl~e--------L~-------------- 323 (557)
...+++++...+.+ -.=-.|||.|++.|..+.. ++|.. +.++|+.. +.
T Consensus 27 l~~lt~~d~~~L~~-lgI~tIiDLRs~~E~~~~p~~~~~g~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T PF13350_consen 27 LSNLTEADLERLRE-LGIRTIIDLRSPTERERAPDPLIDGVQ------YVHIPIFGDDASSPDKLAELLQSSADAPRGML 99 (164)
T ss_dssp -TT--HHHHHHHHH-TT--EEEE-S-HHHHHHHS----TT-E------EEE--SS-S-TTH----------HHHHHHHHH
T ss_pred cCcCCHHHHHHHHh-CCCCEEEECCCccccccCCCCCcCCce------eeeecccccccccccccccccccccchhhHHH
Confidence 35689998877763 3336899999999987642 33332 12333311 00
Q ss_pred chHHhhhcC-chhhhhHHHHHHHhhhcccCCCCeEEEEeCCCc-HHHHH-HHHHHHccCC
Q 008704 324 GSVKKLLRG-GRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT-RSKGI-ARSLRKLGVM 380 (557)
Q Consensus 324 ~~l~~ll~n-~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~-RS~~A-A~~L~~lGy~ 380 (557)
.....++.. .+.+.++|..+-- ++ .+++|||..|. |+..+ |-.|..+|..
T Consensus 100 ~~Y~~~~~~~~~~~~~~~~~l~~------~~-~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 100 EFYREMLESYAEAYRKIFELLAD------AP-GPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHH-------TT---EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhhhHHHHHHHHHhcc------CC-CcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 001122222 2344444433321 23 69999999998 77654 4556777864
No 65
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=85.36 E-value=0.33 Score=54.96 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhc
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLK 349 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK 349 (557)
.+|+++++..+ +...++|.|...||.++|+++++ |+|...-.+.+.++.. +. ++.
T Consensus 622 prmsAedl~~~----~~l~v~d~r~~~ef~r~~~s~s~--------nip~~~~ea~l~~~~~----l~------~~~--- 676 (725)
T KOG1093|consen 622 PRISAEDLIWL----KMLYVLDTRQESEFQREHFSDSI--------NIPFNNHEADLDWLRF----LP------GIV--- 676 (725)
T ss_pred ccccHHHHHHH----HHHHHHhHHHHHHHHHhhccccc--------cCCccchHHHHHHhhc----ch------HhH---
Confidence 35667666555 25679999999999999999998 8887632223322211 11 111
Q ss_pred ccCCCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHH
Q 008704 350 IVQDRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 350 ~~~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aW 392 (557)
-....+++++......++.....+..+-+.+..++.+|+.+.
T Consensus 677 -~~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 677 -CSEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred -HhhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 013455555555444555555566666688888899988843
No 66
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=84.43 E-value=0.13 Score=43.82 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=29.8
Q ss_pred cccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCC
Q 008704 189 GTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (557)
Q Consensus 189 G~~~~~lp~~i~~~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~ 237 (557)
+|||||++|+..+....|.+ .| |++++-+..+ +.++.|.++-.+|+
T Consensus 3 ~pC~rCl~p~~~~~~~~C~~-~G-Vlg~~~giig-slqA~eaik~l~g~ 48 (84)
T PF05237_consen 3 TPCYRCLFPEPPESAPTCAE-AG-VLGPVVGIIG-SLQANEAIKLLLGI 48 (84)
T ss_dssp ---HHHHHTTSS--TTSSST-S--B-HHHHHHHH-HHHHHHHHHHHCT-
T ss_pred CceehhcCCCCCccCCCccc-cc-cccchHHHHH-HHHHHHHHHHHHhc
Confidence 69999999999666666777 57 7888887777 57777777776664
No 67
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=83.90 E-value=0.15 Score=53.73 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=42.2
Q ss_pred CCCcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccchHHhhh
Q 008704 267 GYSGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGSVKKLL 330 (557)
Q Consensus 267 g~~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~l~~ll 330 (557)
.|...-+|+++.+.+.+ ....+|+|.+..|..+||||++ ++|...+....+++.
T Consensus 11 ~f~~i~~~~~~~~~l~~--~~~~~d~rg~i~~a~egIngti--------s~~~~~~~~~~~~l~ 64 (314)
T PRK00142 11 KYTPIEDPEAFRDEHLA--LCKSLGLKGRILVAEEGINGTV--------SGTIEQTEAYMAWLK 64 (314)
T ss_pred ccccCCCHHHHHHHHHH--HHHHcCCeeEEEEcCCCceEEE--------EecHHHHHHHHHHHh
Confidence 35555678888888853 5789999999999999999998 888866666655544
No 68
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=81.92 E-value=2.1 Score=39.73 Aligned_cols=99 Identities=10% Similarity=-0.064 Sum_probs=52.3
Q ss_pred hhhhhhhhHH----hhhhhhccCcce--------EEEee------------cccCCCCCccHHHHHhHhhhhccceeeec
Q 008704 162 AVDVLRNTIV----ALEESMTNGASF--------VVYYY------------GTTKESLPPEIRDALNLYEDRAVKLWRPV 217 (557)
Q Consensus 162 ~~d~l~~~~~----~~~~~~~~~~~~--------~~~~y------------G~~~~~lp~~i~~~l~~~e~~ag~Vl~~~ 217 (557)
+.|+|++.+. .-...|.|.|++ -.|.= ||++.....++.+.++. .+....+.
T Consensus 2 s~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~----~~~~~~~~ 77 (138)
T cd01445 2 STEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDE----AGFEESME 77 (138)
T ss_pred CHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCc----CCCCCCCC
Confidence 4566666654 123456666654 33432 89998887776654322 12111111
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCCCceehhhhhhhHHHHHHHHHHHHhcCCC
Q 008704 218 GSALQQVSVAIEGLERSLGFDPNDPIVPFVVFLGTSATLWIFYWWWTYGGYS 269 (557)
Q Consensus 218 G~a~~q~~~~iE~l~~~lG~~~~~pVv~~~v~vg~~~~l~~l~~l~~~~g~~ 269 (557)
.. ...++.+...+|++++++||+|.-.-........+||.+++.|+.
T Consensus 78 p~-----~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~ 124 (138)
T cd01445 78 PS-----EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHP 124 (138)
T ss_pred CC-----HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCC
Confidence 11 234666677789999999986432100011222356776666654
No 69
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=81.03 E-value=3.1 Score=33.69 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=29.3
Q ss_pred chhhhhchhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHH
Q 008704 428 QFLGFGVGCFAVLYVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFK 476 (557)
Q Consensus 428 ~l~G~~~Gl~~~~~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~ 476 (557)
+++|.++.+.+. +....+..++ .+++|+.+++. ++++||....++
T Consensus 14 ~~~G~~l~~~~~-~~~~~~~~~~--~~~~g~~ll~~-g~~g~Cp~~~ll 58 (66)
T PF11127_consen 14 IIIGIVLLALGL-LGLFGSWGWL--LGFVGAMLLVT-GITGFCPLYALL 58 (66)
T ss_pred HHHHHHHHHHHH-HhcccchHHH--HHHHHHHHHHH-HHHCcCHhHHHh
Confidence 445554432222 2222222455 89999998888 999999988876
No 70
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=78.31 E-value=6.3 Score=35.17 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=18.5
Q ss_pred CCCeEEEEeCCCc-HHHHH--HHHHHHccC
Q 008704 353 DRSKVIVMDADGT-RSKGI--ARSLRKLGV 379 (557)
Q Consensus 353 kd~~VVVyC~sG~-RS~~A--A~~L~~lGy 379 (557)
.+.+|+|||..|. ||..+ ++.+...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999998 77643 344444443
No 71
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=77.38 E-value=2.3 Score=44.51 Aligned_cols=97 Identities=24% Similarity=0.271 Sum_probs=55.0
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCccccccccccccCcccccch--------HHhhhcCchhhhhHHHHH
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDLRRGARFRYASVYLPEVGGS--------VKKLLRGGRELDDTLTAA 343 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA~gav~~~~~nIPl~eL~~~--------l~~ll~n~~~L~~ll~al 343 (557)
++.+++.+.+. .++.+++|.|+ +..||.+|. ++.++.+..+ ++.++++....
T Consensus 6 ~s~~wlnr~l~-~~nllllDCRs----es~~i~~A~--------~valPalmlrrl~~g~l~~ra~~p~~~d~------- 65 (343)
T KOG1717|consen 6 KSVAWLNRQLE-LGNLLLLDCRS----ESSHIESAI--------NVALPALMLRRLTGGNLPVRALFPRSCDD------- 65 (343)
T ss_pred HHHHHHHhhcc-cCceEEEecCC----ccchhhhhh--------hhcchHHHHHHHhCCCCcceeccCCcccc-------
Confidence 56677777774 46799999999 456888876 4443333210 11112211111
Q ss_pred HHhhhcccC---CCCeEEEEeCCCc------HHH----HHHHHHHHccCCcEEEecccHHHHHH
Q 008704 344 VIRNLKIVQ---DRSKVIVMDADGT------RSK----GIARSLRKLGVMRAFLVQGGFQSWVK 394 (557)
Q Consensus 344 GI~~LK~~~---kd~~VVVyC~sG~------RS~----~AA~~L~~lGy~nV~vLdGG~~aWka 394 (557)
+..+ +...+|.|+.+.. .+. ..-+.++..|+ .+|.|.|||...+.
T Consensus 66 -----~~~~~~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~ 123 (343)
T KOG1717|consen 66 -----KRFPARCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQA 123 (343)
T ss_pred -----ccccccCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhh
Confidence 0011 2367899987621 111 12244566787 78999999986654
No 72
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=69.01 E-value=7.2 Score=34.23 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHh
Q 008704 446 WEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLL 482 (557)
Q Consensus 446 ~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~ 482 (557)
...+++++|+.=.+.+.++.++..++|++|.+.++.+
T Consensus 48 l~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~ 84 (90)
T PF14159_consen 48 LPGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSL 84 (90)
T ss_pred hHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHH
Confidence 5677899999999999999999999999999999865
No 73
>PLN02777 photosystem I P subunit (PSI-P)
Probab=67.81 E-value=5.7 Score=38.66 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhc
Q 008704 446 WEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLL 483 (557)
Q Consensus 446 ~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~~ 483 (557)
...+||++|+.=.|++.|+.|++.++|++|+++++.+-
T Consensus 123 lP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~lk 160 (167)
T PLN02777 123 VPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDTY 160 (167)
T ss_pred ccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998764
No 74
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=58.43 E-value=34 Score=38.46 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=19.3
Q ss_pred CeEEEEcCChhhHhhCCCCCcc
Q 008704 286 NAVLIDVRHEDLRERDGIPDLR 307 (557)
Q Consensus 286 ~avLIDVRs~~Ey~~GHIPGA~ 307 (557)
+..+||.|+.++|..||.-.|-
T Consensus 326 rFFiVDcRpaeqynaGHlstaF 347 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAF 347 (669)
T ss_pred EEEEEeccchhhcccccchhhh
Confidence 3679999999999999998764
No 75
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=56.30 E-value=28 Score=34.10 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=33.2
Q ss_pred EEEcCChhhHhhCCCCCcc---ccccccccccCcccccchHHhhhcCchhhhhHHHHHHHhhhcccCCCCeEEEEeCCCc
Q 008704 289 LIDVRHEDLRERDGIPDLR---RGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVIRNLKIVQDRSKVIVMDADGT 365 (557)
Q Consensus 289 LIDVRs~~Ey~~GHIPGA~---gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI~~LK~~~kd~~VVVyC~sG~ 365 (557)
||=.-+..|..+-++|+-. ...-+.|.++|+++...... ....+++..+.. .+..+++|++||.+|.
T Consensus 75 Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~------~~~~~i~~eL~~----~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 75 VVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDF------AAAWQILEELAA----RLENGRKVLVHCRGGL 144 (168)
T ss_dssp EEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---H------HHHHHHHHHHHH----HHHTT--EEEE-SSSS
T ss_pred EEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCH------HHHHHHHHHHHH----HHHcCCEEEEECCCCC
Confidence 3446667777666666531 11112444666654322110 111122222211 1246789999999987
Q ss_pred -HHHH-HHHHHHHcc
Q 008704 366 -RSKG-IARSLRKLG 378 (557)
Q Consensus 366 -RS~~-AA~~L~~lG 378 (557)
|+.. +|..|..+|
T Consensus 145 GRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 145 GRTGLVAACLLLELG 159 (168)
T ss_dssp SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHc
Confidence 8866 555666665
No 76
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=54.63 E-value=26 Score=37.21 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred cCHHHHHHHHhCCCCeEEEEcCChhhHhh---CCCC
Q 008704 272 LSPKSTLELLRGKENAVLIDVRHEDLRER---DGIP 304 (557)
Q Consensus 272 ISpeea~elL~~~~~avLIDVRs~~Ey~~---GHIP 304 (557)
+...++.+.+. ..++.+||+|+..+|+. ||||
T Consensus 138 ~gKt~Ll~~L~-~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 138 SGKTELLHALA-NAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred cCHHHHHHHHh-cCCCeEEECCchHHhcCcccCCCC
Confidence 56778888886 35789999999999988 8888
No 77
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=54.02 E-value=10 Score=34.34 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=30.3
Q ss_pred EEEEeCCCc-HHHHHHHHHHHc----cCCcEEEecccHHHH
Q 008704 357 VIVMDADGT-RSKGIARSLRKL----GVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VVVyC~sG~-RS~~AA~~L~~l----Gy~nV~vLdGG~~aW 392 (557)
|+|+|.+.. ||..+...++.+ +..++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689998765 999888888887 777899999998866
No 78
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=53.29 E-value=2.5 Score=39.40 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=11.2
Q ss_pred hhhhHHHhhHhhhhhhHHHHhhhhhHhHhhh
Q 008704 95 KGENAVKSSLDTITSSLTSIKKSTSEAVDNV 125 (557)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (557)
...+.+...++.+...+.+.+...+..++..
T Consensus 49 ~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~ 79 (202)
T PF01442_consen 49 ELSDRLEERLDEVKERIEERIEELKNSLDSS 79 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 79
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=52.26 E-value=17 Score=34.15 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCCeEEEEe-C----CCcHHHHHHHHHHHccCCcEEEecccHHHH
Q 008704 353 DRSKVIVMD-A----DGTRSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 353 kd~~VVVyC-~----sG~RS~~AA~~L~~lGy~nV~vLdGG~~aW 392 (557)
++.+++++| . .|..-...+..|+++|..++.+||||-...
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~ 143 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSST 143 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceE
Confidence 454555554 4 367778899999999999999999997643
No 80
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=50.62 E-value=53 Score=29.44 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.5
Q ss_pred CCCCeEEEEeCCCc-HHHH--HHHHHHHccC
Q 008704 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (557)
Q Consensus 352 ~kd~~VVVyC~sG~-RS~~--AA~~L~~lGy 379 (557)
..+.+|+|||..|. ||.. +++.+...|+
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 46789999999997 7764 4445566665
No 81
>PLN02806 complex I subunit
Probab=48.84 E-value=18 Score=31.30 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=40.0
Q ss_pred cchhhhhchhhhHH---------HhhhhHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHhcccch
Q 008704 427 VQFLGFGVGCFAVL---------YVLLEWEKTLQFIAVIGLGQTIYRRVASYNDAEDFKQDVRLLLAPVR 487 (557)
Q Consensus 427 l~l~G~~~Gl~~~~---------~a~~~~~~~Lq~~g~vG~gl~~a~~l~~~e~~~~~~~d~~~~~~p~~ 487 (557)
..++|+++||..-+ |.-.||+..+ +.|+|..|.+.+-.+| ..+.+|+-+.|.-.|
T Consensus 5 ~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~----~~G~GA~~~n~l~~we--~kL~edldk~L~~~r 68 (81)
T PLN02806 5 ATVVGALLGLGTQLYSNALRKLPLMRHPWEHVL----AMGLGAVFANQLVKWE--VKLKEDLDKMLAKAR 68 (81)
T ss_pred HHHHHHHHHHHHHHHHhHHhhCccccCcHHHHH----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34677777766543 4457899988 7889999998888876 467888876665554
No 82
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=47.41 E-value=60 Score=31.13 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=40.8
Q ss_pred hcccCCCCeEEEEeCCCc--HHHHHHHHHHH---ccCCcEEEecccHHHH----H-HcCCceeccCCcchhhhhh-hhHH
Q 008704 348 LKIVQDRSKVIVMDADGT--RSKGIARSLRK---LGVMRAFLVQGGFQSW----V-KEGLRIKELKSETALTILN-EDAE 416 (557)
Q Consensus 348 LK~~~kd~~VVVyC~sG~--RS~~AA~~L~~---lGy~nV~vLdGG~~aW----k-aaGLPV~~~~~~~~lel~~-e~~~ 416 (557)
++.++++..+|+.|..|. .|...|..|.. .|..++..+-||-.++ + ++...+.-.+-..|-++.+ --.|
T Consensus 61 l~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~larlvL~E 140 (155)
T PF02590_consen 61 LKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLARLVLLE 140 (155)
T ss_dssp HCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHHHHHHH
T ss_pred HhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHHHHHHH
Confidence 455678889999999997 77888888765 6777899999986543 3 2344444433334544433 2234
Q ss_pred HHHh
Q 008704 417 AILE 420 (557)
Q Consensus 417 ~i~~ 420 (557)
||.|
T Consensus 141 QiYR 144 (155)
T PF02590_consen 141 QIYR 144 (155)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 83
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.00 E-value=94 Score=35.49 Aligned_cols=106 Identities=24% Similarity=0.386 Sum_probs=65.2
Q ss_pred hhcchhhhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHHhhhhhHhHhhhhhhhhhhhccccCcCCCCccccc---
Q 008704 72 SNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQTGGSAGSKLTNFS--- 148 (557)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--- 148 (557)
+..+..++-++..|+--++..--+ |.=|.+.||+++.-+ |.|++.+ ....++-.+|-. ++.|.++-+||
T Consensus 271 ~~~~k~~g~aFg~fkglvG~K~L~-eeDL~pvL~kM~ehL--itKNVA~---eiA~~LcEsV~a--~Legkkv~sfs~V~ 342 (587)
T KOG0781|consen 271 AATKKTVGGAFGLFKGLVGSKSLS-EEDLNPVLDKMTEHL--ITKNVAA---EIAEKLCESVAA--SLEGKKVGSFSTVE 342 (587)
T ss_pred hhhhcchhhHHHHHHhhccccccc-HhhhHHHHHHHHHHH--HhhhhhH---HHHHHHHHHHHH--HhhhcccccchHHH
Confidence 445556777777777644433333 445777788877643 3344322 122344444433 57778877886
Q ss_pred hhhHHHhhhc------cchhhhhhhhhHHhhhhhhccCcceEEEeec
Q 008704 149 TDLKEASSKA------TVAAVDVLRNTIVALEESMTNGASFVVYYYG 189 (557)
Q Consensus 149 ~~l~~~~~~a------~~~~~d~l~~~~~~~~~~~~~~~~~~~~~yG 189 (557)
+..|+|...+ +..+||.||.-+.+=+ +.+|||+-.-|
T Consensus 343 ~Tvk~Al~daLvQILTP~~sVDlLRdI~sar~----~krPYVi~fvG 385 (587)
T KOG0781|consen 343 STVKEALRDALVQILTPQRSVDLLRDIMSARR----RKRPYVISFVG 385 (587)
T ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh----cCCCeEEEEEe
Confidence 5555555443 7789999996655443 46999998877
No 84
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=45.55 E-value=30 Score=36.07 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.8
Q ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHccCCcEE
Q 008704 352 QDRSKVIVMDADGTRSKGIARSLRKLGVMRAF 383 (557)
Q Consensus 352 ~kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~ 383 (557)
.++..+++||+.-.........|+..||.++.
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 57799999999988999999999999996543
No 85
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=45.46 E-value=22 Score=32.35 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=29.2
Q ss_pred EEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHH
Q 008704 357 VIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 357 VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aW 392 (557)
|+|+|.+.. ||..+...|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578998665 999999999887655788888888877
No 86
>PLN02727 NAD kinase
Probab=43.83 E-value=40 Score=40.96 Aligned_cols=82 Identities=9% Similarity=0.149 Sum_probs=43.8
Q ss_pred cccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCC----ccccccccccccCcccccchHHhhhcCchhhhhHHHHHHH
Q 008704 270 GDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPD----LRRGARFRYASVYLPEVGGSVKKLLRGGRELDDTLTAAVI 345 (557)
Q Consensus 270 g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPG----A~gav~~~~~nIPl~eL~~~l~~ll~n~~~L~~ll~alGI 345 (557)
+.++++++..+.+. .=-.||+.|+..|- .+..+- +....-+.+.++|+..-... .++.+++....+.-
T Consensus 267 gQpspe~la~LA~~-GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~ap------t~EqVe~fa~~l~~ 338 (986)
T PLN02727 267 GQVTEEGLKWLLEK-GFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRTAP------SAEQVEKFASLVSD 338 (986)
T ss_pred CCCCHHHHHHHHHC-CCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCCCC------CHHHHHHHHHHHHh
Confidence 57999999887753 23579999997762 222211 11112234456665321110 11222222211100
Q ss_pred hhhcccCCCCeEEEEeCCCc
Q 008704 346 RNLKIVQDRSKVIVMDADGT 365 (557)
Q Consensus 346 ~~LK~~~kd~~VVVyC~sG~ 365 (557)
...+||++||++|.
T Consensus 339 ------slpkPVLvHCKSGa 352 (986)
T PLN02727 339 ------SSKKPIYLHSKEGV 352 (986)
T ss_pred ------hcCCCEEEECCCCC
Confidence 24689999999999
No 87
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=41.14 E-value=47 Score=28.70 Aligned_cols=48 Identities=6% Similarity=0.198 Sum_probs=26.5
Q ss_pred chhhcchhhhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHHhhh
Q 008704 70 SISNIKSSFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKS 117 (557)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (557)
.|..+..+++++...+.+.....+.++.+-+++.++.++..+.++...
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~ 53 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQ 53 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666555555555555555555544443333
No 88
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.42 E-value=46 Score=31.84 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCCCeEEEEeCCCc---HHHHHHHHHHHccCCcEEE--eccc----------HHHHHHcCCceeccC
Q 008704 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFL--VQGG----------FQSWVKEGLRIKELK 403 (557)
Q Consensus 352 ~kd~~VVVyC~sG~---RS~~AA~~L~~lGy~nV~v--LdGG----------~~aWkaaGLPV~~~~ 403 (557)
++..+|+++|..|+ ....+|+.|...|++ |.+ +... +..+++.|.++....
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 57889999999987 567789999999995 555 3221 346667777766533
No 89
>PRK08223 hypothetical protein; Validated
Probab=37.60 E-value=18 Score=38.14 Aligned_cols=21 Identities=14% Similarity=-0.148 Sum_probs=14.2
Q ss_pred CCeEEEEcCChhhHhhCCCCCc
Q 008704 285 ENAVLIDVRHEDLRERDGIPDL 306 (557)
Q Consensus 285 ~~avLIDVRs~~Ey~~GHIPGA 306 (557)
+...++|..+. .|+++.+||-
T Consensus 247 ~~~~~~d~~~~-~~~~~~~~~g 267 (287)
T PRK08223 247 PWFHQFDAYRS-RYVRTWRPGG 267 (287)
T ss_pred CeEEEEEcCCc-eEEEEEecCC
Confidence 35677887665 4677778864
No 90
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=34.51 E-value=98 Score=29.79 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=44.1
Q ss_pred ccCCCCeEEEEeCCCc--HHHHHHHHHHHc---cCCcEEEecccHHHHH-----HcCCceeccCCcchhhhhh-hhHHHH
Q 008704 350 IVQDRSKVIVMDADGT--RSKGIARSLRKL---GVMRAFLVQGGFQSWV-----KEGLRIKELKSETALTILN-EDAEAI 418 (557)
Q Consensus 350 ~~~kd~~VVVyC~sG~--RS~~AA~~L~~l---Gy~nV~vLdGG~~aWk-----aaGLPV~~~~~~~~lel~~-e~~~~i 418 (557)
.++++..+|+.|..|. .|...|..|... |..++..+-||-.++. .+...+.-.+-..|-++.+ --.+|+
T Consensus 63 ~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~mTfpH~larlvL~EQl 142 (157)
T PRK00103 63 ALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKLTLPHQLVRVLLAEQL 142 (157)
T ss_pred hCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccCCCcHHHHHHHHHHHH
Confidence 3466778999999887 888888888654 5558888999876553 2344444333334544433 223444
Q ss_pred Hh
Q 008704 419 LE 420 (557)
Q Consensus 419 ~~ 420 (557)
.|
T Consensus 143 YR 144 (157)
T PRK00103 143 YR 144 (157)
T ss_pred HH
Confidence 44
No 91
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=34.08 E-value=56 Score=35.17 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=33.1
Q ss_pred CCCeEEEEeCCCcHHHHHHHHHHHccCCcEEEecccHHHHHHcC
Q 008704 353 DRSKVIVMDADGTRSKGIARSLRKLGVMRAFLVQGGFQSWVKEG 396 (557)
Q Consensus 353 kd~~VVVyC~sG~RS~~AA~~L~~lGy~nV~vLdGG~~aWkaaG 396 (557)
++.+|+++ .-|.....++..|...|+.++.++++..-.|.+-+
T Consensus 134 ~~~~Vlvv-G~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~ 176 (376)
T PRK08762 134 LEARVLLI-GAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQ 176 (376)
T ss_pred hcCcEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhc
Confidence 45566666 44667778999999999999999999876666543
No 92
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=32.07 E-value=64 Score=27.88 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHHhhhhhHhHhhhhhhhhhhhcc
Q 008704 77 SFDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSSIDQ 135 (557)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 135 (557)
.+.++.+.+.+-+.+..+.+.+.+.+.-+++...+.++-..+.+..+.+..+.....++
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 64 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQ 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444443
No 93
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=31.68 E-value=68 Score=28.40 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=20.2
Q ss_pred CCCCeEEEEeCCCc-HHHH--HHHHHHHccC
Q 008704 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (557)
Q Consensus 352 ~kd~~VVVyC~sG~-RS~~--AA~~L~~lGy 379 (557)
.++.+|+|||..|. ||.. +++++...|.
T Consensus 71 ~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~ 101 (133)
T PF00782_consen 71 SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGM 101 (133)
T ss_dssp HTTSEEEEEESSSSSHHHHHHHHHHHHHHTS
T ss_pred cccceeEEEeCCCcccchHHHHHHHHHHcCC
Confidence 46789999999998 7754 3445555665
No 94
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=31.62 E-value=75 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=27.4
Q ss_pred eEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHH
Q 008704 356 KVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQ 390 (557)
Q Consensus 356 ~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~ 390 (557)
+|+|+|.... ||..+...|+.++-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6999998665 9988888888877666777777753
No 95
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=30.72 E-value=82 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCc---HHHHHHHHHHHccCCcEEEe
Q 008704 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 354 d~~VVVyC~sG~---RS~~AA~~L~~lGy~nV~vL 385 (557)
..+|+++|..|+ ....+|+.|...|+. |.++
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~ 82 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVL 82 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEE
Confidence 578999998876 667899999999974 4433
No 96
>PRK10126 tyrosine phosphatase; Provisional
Probab=30.65 E-value=59 Score=30.31 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=28.4
Q ss_pred CeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHH
Q 008704 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aW 392 (557)
.+|+|+|.+.. ||..+...|+.++- ++.+...|...|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998665 99999888888763 466777777655
No 97
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.23 E-value=75 Score=32.63 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=24.7
Q ss_pred CCeEEEEeCCCc---HHHHHHHHHHHccCCcEEEe
Q 008704 354 RSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 354 d~~VVVyC~sG~---RS~~AA~~L~~lGy~nV~vL 385 (557)
..+|+|+|..|+ ....+|+.|...|| +|.++
T Consensus 60 ~~~V~VlcG~GNNGGDGlv~AR~L~~~G~-~V~v~ 93 (246)
T PLN03050 60 HPRVLLVCGPGNNGGDGLVAARHLAHFGY-EVTVC 93 (246)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHHCCC-eEEEE
Confidence 368999998765 77889999999999 55554
No 98
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=27.61 E-value=55 Score=29.92 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.7
Q ss_pred eEEEEeCCCc-HHHHHHHHHHHccCC-cEEEecccHHHH
Q 008704 356 KVIVMDADGT-RSKGIARSLRKLGVM-RAFLVQGGFQSW 392 (557)
Q Consensus 356 ~VVVyC~sG~-RS~~AA~~L~~lGy~-nV~vLdGG~~aW 392 (557)
+|+|+|.+.. ||..+...++.+.-+ ++.+...|+..+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 6999998765 998888888877554 788888887554
No 99
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=27.36 E-value=40 Score=29.57 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=37.5
Q ss_pred hhhhhHHhhhhhhccCcce-------EEEeecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCC
Q 008704 165 VLRNTIVALEESMTNGASF-------VVYYYGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGF 237 (557)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~-------~~~~yG~~~~~lp~~i~~~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~ 237 (557)
.+++.+..-...+.|.|+- -.|..||++..+.....+.........+. .. ....++......++
T Consensus 6 ~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~ 76 (122)
T cd01448 6 WLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHM--------LP-SPEEFAELLGSLGI 76 (122)
T ss_pred HHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCC--------CC-CHHHHHHHHHHcCC
Confidence 3444443322346666665 55667888877665555443322111221 10 12234444555688
Q ss_pred CCCCCcee
Q 008704 238 DPNDPIVP 245 (557)
Q Consensus 238 ~~~~pVv~ 245 (557)
+++.||++
T Consensus 77 ~~~~~vv~ 84 (122)
T cd01448 77 SNDDTVVV 84 (122)
T ss_pred CCCCEEEE
Confidence 99999975
No 100
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=27.01 E-value=1.3e+02 Score=27.06 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCeEEEEeCCCc----HHHHHHHHHHHccCCcEEEeccc------HHHHHHcCCc
Q 008704 353 DRSKVIVMDADGT----RSKGIARSLRKLGVMRAFLVQGG------FQSWVKEGLR 398 (557)
Q Consensus 353 kd~~VVVyC~sG~----RS~~AA~~L~~lGy~nV~vLdGG------~~aWkaaGLP 398 (557)
.+..+|++|.... ........|++.|+.++.++-|| +..|++.|+.
T Consensus 49 ~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 49 EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCC
Confidence 3446777776543 33456677888899888888897 3467778864
No 101
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=26.32 E-value=78 Score=29.58 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=28.0
Q ss_pred CeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccHHHH
Q 008704 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGFQSW 392 (557)
Q Consensus 355 ~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~~aW 392 (557)
.+|+|+|.+.. ||..+...|+.+.- ++.+...|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 37999997655 99888888887653 466777787665
No 102
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.90 E-value=3.2e+02 Score=27.81 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=20.9
Q ss_pred CCeEEEEeCCCcHHHHHH-HHHHHccCC
Q 008704 354 RSKVIVMDADGTRSKGIA-RSLRKLGVM 380 (557)
Q Consensus 354 d~~VVVyC~sG~RS~~AA-~~L~~lGy~ 380 (557)
.++.+++|.+...+...+ .+.++.||+
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 588999999999887655 455778884
No 103
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=25.79 E-value=1.1e+02 Score=30.37 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=25.6
Q ss_pred CCCCeEEEEeCCCc---HHHHHHHHHHHccCCcEEEe
Q 008704 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 352 ~kd~~VVVyC~sG~---RS~~AA~~L~~lGy~nV~vL 385 (557)
++.++|+++|..|+ ....+|+.|...|+ +|+++
T Consensus 43 ~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v-~V~~~ 78 (205)
T TIGR00197 43 PLAGHVIIFCGPGNNGGDGFVVARHLKGFGV-EVFLL 78 (205)
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHHhCCC-EEEEE
Confidence 45678999998765 77788999988776 57766
No 104
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=23.89 E-value=84 Score=30.32 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=19.5
Q ss_pred CCCCeEEEEeCCCc-HHHH--HHHHHHHccC
Q 008704 352 QDRSKVIVMDADGT-RSKG--IARSLRKLGV 379 (557)
Q Consensus 352 ~kd~~VVVyC~sG~-RS~~--AA~~L~~lGy 379 (557)
.+..+|+|+|..|. ||.. +|+.|...|.
T Consensus 103 ~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 103 SKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred hcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 35669999999987 7754 4456666444
No 105
>PRK10565 putative carbohydrate kinase; Provisional
Probab=23.46 E-value=1.1e+02 Score=34.58 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=25.2
Q ss_pred CCCCeEEEEeCCCc---HHHHHHHHHHHccCCcEEEe
Q 008704 352 QDRSKVIVMDADGT---RSKGIARSLRKLGVMRAFLV 385 (557)
Q Consensus 352 ~kd~~VVVyC~sG~---RS~~AA~~L~~lGy~nV~vL 385 (557)
++..+|+|+|..|+ ....+|+.|...||+ |.++
T Consensus 58 ~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 58 PDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 34567999998776 667899999999994 4443
No 106
>PRK13530 arsenate reductase; Provisional
Probab=23.36 E-value=1.3e+02 Score=27.75 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=26.3
Q ss_pred CeEEEEeCCCc-HHHHHHHHHHHccCCcEEEecccH
Q 008704 355 SKVIVMDADGT-RSKGIARSLRKLGVMRAFLVQGGF 389 (557)
Q Consensus 355 ~~VVVyC~sG~-RS~~AA~~L~~lGy~nV~vLdGG~ 389 (557)
.+|+|+|.+.. ||..+...++.++-.++.+...|.
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~ 39 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGI 39 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 47999998665 888888888776545677777775
No 107
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.58 E-value=2.7e+02 Score=30.20 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=63.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhhHHHhhHhhhhhhHHHHhhhhhHhHhhhhhhhhhh-hccccCcCCCCccccchhhHHHhh
Q 008704 78 FDDFLAGVNESFSSSMIKGENAVKSSLDTITSSLTSIKKSTSEAVDNVVSRVFSS-IDQTGGSAGSKLTNFSTDLKEASS 156 (557)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~l~~~~~ 156 (557)
+.+.+..++.--.+-.++..+++++.++..+..+.+-.++...+++.|+.++... +..... .+|+--+.++.-+-++.
T Consensus 126 ~~qt~~dl~~~~~t~~~~~~~~y~~~i~~a~~~v~tG~~t~~~Ai~~av~~~~~~Gi~~i~d-~~Gr~w~le~y~rm~vr 204 (361)
T PF06152_consen 126 VRQTKGDLNNVNQTLLRTAQDVYRRIIDEAVAQVVTGAFTYQQAIRDAVKKLADSGIRGIVD-KSGRRWRLESYARMAVR 204 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCeEEEC-CCCCCCCHHHHHHHHHH
Confidence 3344444433333445668999999999999988888888889999988665443 222222 23443344444444443
Q ss_pred hccchhhhhhhhhH-HhhhhhhccCcceEEEe--ecccCCCCCc
Q 008704 157 KATVAAVDVLRNTI-VALEESMTNGASFVVYY--YGTTKESLPP 197 (557)
Q Consensus 157 ~a~~~~~d~l~~~~-~~~~~~~~~~~~~~~~~--yG~~~~~lp~ 197 (557)
-+.. |-+. ...+..-.-|..+++++ .|+|+.|-|-
T Consensus 205 T~~~------q~~~~~~~~~~~e~G~dlv~vS~H~garp~cap~ 242 (361)
T PF06152_consen 205 TTVN------QAANEGRLNRMEELGIDLVEVSSHPGARPSCAPW 242 (361)
T ss_pred HHHH------HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcCc
Confidence 2222 1111 11112222355555554 3788888876
No 108
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=21.52 E-value=1.5e+02 Score=25.64 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=31.9
Q ss_pred hhccCcceEEEe-----------ecccCCCCCccHHHHHhHhhhhccceeeeccchHHHHHHHHHHHHHhcCCCCCCCce
Q 008704 176 SMTNGASFVVYY-----------YGTTKESLPPEIRDALNLYEDRAVKLWRPVGSALQQVSVAIEGLERSLGFDPNDPIV 244 (557)
Q Consensus 176 ~~~~~~~~~~~~-----------yG~~~~~lp~~i~~~l~~~e~~ag~Vl~~~G~a~~q~~~~iE~l~~~lG~~~~~pVv 244 (557)
.+.|.|+.-.|. .||++.++.....+.... .+ ... ....++.....+++++++++|
T Consensus 16 ~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~----~~-------~~~--~~~~~~~~~~~~~~~~~~~iv 82 (118)
T cd01449 16 QLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE----DG-------TFK--SPEELRALFAALGITPDKPVI 82 (118)
T ss_pred EEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCC----CC-------CcC--CHHHHHHHHHHcCCCCCCCEE
Confidence 455666654443 288888776655443321 11 000 122345555567888999997
Q ss_pred eh
Q 008704 245 PF 246 (557)
Q Consensus 245 ~~ 246 (557)
++
T Consensus 83 ~y 84 (118)
T cd01449 83 VY 84 (118)
T ss_pred EE
Confidence 53
No 109
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.19 E-value=1.5e+02 Score=27.95 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=46.9
Q ss_pred CcccCHHHHHHHHhCCCCeEEEEcCChhhHhhCCCCCc------cccccccccccCcc--cccchHHhhhcCchhhhhHH
Q 008704 269 SGDLSPKSTLELLRGKENAVLIDVRHEDLRERDGIPDL------RRGARFRYASVYLP--EVGGSVKKLLRGGRELDDTL 340 (557)
Q Consensus 269 ~g~ISpeea~elL~~~~~avLIDVRs~~Ey~~GHIPGA------~gav~~~~~nIPl~--eL~~~l~~ll~n~~~L~~ll 340 (557)
.+.++++++.++-+. .=..+|--||..|= -.=|+. ....-+.|.++|.. .+.+. .++..-
T Consensus 13 sgQi~~~D~~~iaa~-GFksiI~nRPDgEe--~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~---------dV~~f~ 80 (130)
T COG3453 13 SGQISPADIASIAAL-GFKSIICNRPDGEE--PGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEA---------DVEAFQ 80 (130)
T ss_pred cCCCCHHHHHHHHHh-ccceecccCCCCCC--CCCCChHHHHHHHHhcCCceEEeecCCCCCCHH---------HHHHHH
Confidence 467899999888742 22468888885542 122322 11122234456652 22211 111111
Q ss_pred HHHHHhhhcccCCCCeEEEEeCCCcHHHHHHHH
Q 008704 341 TAAVIRNLKIVQDRSKVIVMDADGTRSKGIARS 373 (557)
Q Consensus 341 ~alGI~~LK~~~kd~~VVVyC~sG~RS~~AA~~ 373 (557)
.++. ..+.+|+-||++|.||...+..
T Consensus 81 ~Al~-------eaegPVlayCrsGtRs~~ly~~ 106 (130)
T COG3453 81 RALD-------EAEGPVLAYCRSGTRSLNLYGL 106 (130)
T ss_pred HHHH-------HhCCCEEeeecCCchHHHHHHH
Confidence 1111 3567999999999999776643
No 110
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=20.03 E-value=4.7e+02 Score=25.04 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=14.9
Q ss_pred CCCCeEEEEeCCCc-HHHH
Q 008704 352 QDRSKVIVMDADGT-RSKG 369 (557)
Q Consensus 352 ~kd~~VVVyC~sG~-RS~~ 369 (557)
.++.+|+|||..|. ||..
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 46889999999997 7765
Done!