BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008705
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
Length = 291
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 136/302 (45%), Gaps = 33/302 (10%)
Query: 8 RNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDI 67
RN L I + S R L A +WAAE L G+ ++ P
Sbjct: 7 RNCLLKCISECSERGLVYAVRWAAEMLNGMNPIEMEHIP--------------------F 46
Query: 68 TSTPVAGVSYVSTPVMEED---EVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFL 124
+STP + P M + EVE+ + YLLAKSYFDC+E+ RAA+ L++ +S+FL
Sbjct: 47 SSTPTG--EFDLDPDMANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFL 104
Query: 125 RCYALYLAGXXXXXXXXXXXXGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGI 184
R Y+ YLAG ++ NRE + L + G DP+ LYL G+
Sbjct: 105 RLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGV 164
Query: 185 VLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDIXXXXXX---XXHWMKDYFL 241
V + + ++ A V P+ W+AW EL S++ H M F
Sbjct: 165 VYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMTKIFY 224
Query: 242 ASAYQELRMHKESLTKYEYL---QGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298
A EL H+ + + YE L + F S Y++ Q A Y R+F++ E +FE +L N
Sbjct: 225 VYASHEL--HQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRDFDEAESLFENILTN 282
Query: 299 DP 300
DP
Sbjct: 283 DP 284
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
E+ +GN Y +G +++++ Y+++AL+LD AW +G+ Y + + AI+ Y++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457
++++PR AWY LG AY A+ Y++K++ L P + W + Y + +
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-- 119
Query: 458 EEAIKCYRRA 467
+EAI+ Y++A
Sbjct: 120 DEAIEYYQKA 129
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
AW +G+ Y + + AI+ Y++A++++PR AWY LG AY A+ Y++K++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 492
L P + W + Y + + +EAI+ Y++A + A A L ++ G +
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 493 EAAFYYKKDLE 503
EA YY+K LE
Sbjct: 121 EAIEYYQKALE 131
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%)
Query: 275 IAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK 334
+ A Y ++++ +++ L DP + N Y + + + D
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY 394
E+ +GN Y +G +++++ Y+++AL+LD AW +G+ Y + + AI+ Y
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126
Query: 395 RRAVDINPR 403
++A++++PR
Sbjct: 127 QKALELDPR 135
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 64/103 (62%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
E+ +GN Y +G +++++ Y+++AL+LD N AW +G+ Y + + AI+ Y++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440
++++P + AWY LG AY A+ Y++K++ L PN++
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
N AW +G+ Y + + AI+ Y++A++++P + AWY LG AY A+ Y+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488
+K++ L PN++ W + Y + + +EAI+ Y++A + + A A L
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Query: 489 G 489
G
Sbjct: 125 G 125
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 50/88 (56%)
Query: 327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN 386
+ D E+ +GN Y +G +++++ Y+++AL+LD N AW +G+ Y + +
Sbjct: 33 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 92
Query: 387 TPAAIDAYRRAVDINPRDYRAWYGLGQA 414
AI+ Y++A++++P + A LG A
Sbjct: 93 YDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/105 (20%), Positives = 47/105 (44%)
Query: 275 IAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK 334
+ A Y ++++ +++ L DP + N Y + + + D
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
E+ +GN Y +G +++++ Y+++AL+LD N A +G+
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 496
N + W + Y + + +EAI+ Y++A + + A A L ++ G +EA
Sbjct: 7 NSAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 497 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
YY+K LE PN EA L G ++EA Y + L+
Sbjct: 65 YYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 63/98 (64%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
+GN Y +G ++K++ Y+++AL+LD N SAW +G+ Y + + AI+ Y++A++++P
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440
+ +AWY G AY A+ ++K++ L PN+++
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAK 112
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
N AW +G+ Y + + AI+ Y++A++++P + AWY LG AY A+ Y+
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488
+K++ L PN+++ W Y + + ++AI+ Y++A + + A A L
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDY--QKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124
Query: 489 G 489
G
Sbjct: 125 G 125
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
+GN Y +G ++K++ Y+++AL+LD N AW G+ Y + + AI+ Y++A++++P
Sbjct: 49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Query: 403 RDYRAWYGLGQAYE 416
+ +A LG A +
Sbjct: 109 NNAKAKQNLGNAKQ 122
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 62/103 (60%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
E+ +GN Y +G +++++ Y+++AL+L N AW +G+ Y + + AI+ Y++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440
+++ P + AWY LG AY A+ Y++K++ L PN++
Sbjct: 70 LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
N AW +G+ Y + + AI+ Y++A+++ P + AWY LG AY A+ Y+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467
+K++ L PN++ W + Y + + +EAI+ Y++A
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDY--DEAIEYYQKA 103
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
E+ +GN Y +G +++++ Y+++AL+L N AW +G+ Y + + AI+ Y++A
Sbjct: 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
Query: 398 VDINPRDYRAWYGLGQA 414
+++ P + A LG A
Sbjct: 104 LELYPNNAEAKQNLGNA 120
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 496
N + W + Y + + +EAI+ Y++A + A A L ++ G +EA
Sbjct: 7 NSAEAWYNLGNAYYKQGDY--DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 497 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544
YY+K LE PN EA L G ++EA Y + L+
Sbjct: 65 YYQKALELY-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 131/323 (40%), Gaps = 51/323 (15%)
Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333
++A +Y +FE E +L R +P + + S++ + +C L AH +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF--QC-RRLDRSAHFSTLAI 60
Query: 334 KYRP---ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
K P E+ +GN Y +GQ ++++ ++R AL+L +++ + + V + A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 391 IDAYRRAVDINPRDY----------------------------------RAWYGLGQAYE 416
+ AY A+ NP Y AW LG +
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476
A+H+F K+V L PN +I + ++ + + A+ Y RA + + + A+
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV--LKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE 536
LA +++ G + A Y++ +E P+ +A LA + G EAE
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-------PHFPDAYCNLANALKEKGSVAEAE 291
Query: 537 -VYCTRL-LDYTGPVSFTHLKNL 557
Y T L L T S +L N+
Sbjct: 292 DCYNTALRLCPTHADSLNNLANI 314
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 46/239 (19%)
Query: 334 KYRPESCCI---IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390
+Y P+ C+ +GN G+ E++ + +A++ N+ AW+ +G + A
Sbjct: 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 188
Query: 391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
I + +AV ++P A+ LG + + A+ + +++ L PN + + +A Y
Sbjct: 189 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248
Query: 451 TEQLHMLEEAIKCYRRA---------ANCNDSEAI------------------------- 476
+ L ++ AI YRRA A CN + A+
Sbjct: 249 EQGL--IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
+LN LA + G EEA Y+K LE P A LA+ + G+ +EA
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEA 358
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 32/192 (16%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
+G ++ +G+ ++ +F +A+ LD N+L A+ +G+ E + A+ AY RA+ ++P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ-------------CY 449
L Y + A+ +R+++ LQP+ + +A CY
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 450 ET---------EQLHML----------EEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 490
T + L+ L EEA++ YR+A A A + LA + G+
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 491 DEEAAFYYKKDL 502
+EA +YK+ +
Sbjct: 355 LQEALMHYKEAI 366
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
+S + +V+ D + E +G Y G ++ R++ + + T++G
Sbjct: 24 YSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
YV+++ A+ + + NP ++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
++ A+A Y EQ+ EEA+ +++A ++ A+ L
Sbjct: 144 GKVHRAIAYSY--EQMGSHEEALPHFKKANELDERSAVEL 181
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 47/74 (63%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
+GN Y +G +++++ Y+++AL+LD N AW +G+ Y + + AI+ Y++A++++P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 403 RDYRAWYGLGQAYE 416
+ A LG A +
Sbjct: 75 NNAEAKQNLGNAKQ 88
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
N AW +G+ Y + + AI+ Y++A++++P + AWY LG AY A+ Y+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 429 RKSVFLQPNDS 439
+K++ L PN++
Sbjct: 67 QKALELDPNNA 77
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
AWY LG AY A+ Y++K++ L PN++ W + Y + + +EAI+ Y++
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--DEAIEYYQK 68
Query: 467 AANCNDSEAIALNQLAKLHHALG 489
A + + A A L G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
+S L +V+ D + + +G Y G ++ R+L + + T++G
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
YV+++ A+ + + NP ++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
++ A+A Y EQ+ EEA+ +++A ++ ++ L
Sbjct: 144 GKVHRAIAFSY--EQMGRHEEALPHFKKANELDEGASVEL 181
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
+S L +V+ D + + +G Y G ++ R+L + + T++G
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
YV+++ A+ + + NP ++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
++ A+A YE H EEA+ +++A ++ ++ L
Sbjct: 144 GKVHRAIAFSYEQMGRH--EEALPHFKKANELDEGASVEL 181
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 2/160 (1%)
Query: 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378
+S L +V+ D + + +G Y G ++ R+L + + T++G
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
YV+++ A+ + + NP ++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNE 143
Query: 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478
++ A+A YE H EEA+ +++A ++ ++ L
Sbjct: 144 GKVHRAIAFSYEQMGRH--EEALPHFKKANELDEGASVEL 181
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
P+ C +G ++L G+++K+V F AL + N W +G + A+ AYRR
Sbjct: 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
A+++ P R+ Y LG + + A+ +F +++ +Q
Sbjct: 277 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
G ++ + P A+ + AV +P+ AW LG L A+ R+ + L+P+
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130
Query: 438 DSRLWIAMAQCYETEQLH 455
+ +A+A + E L
Sbjct: 131 NQTALMALAVSFTNESLQ 148
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 53/237 (22%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
+G +V+ F A++ D ++ AW +G E + AI A RR +++ P + A
Sbjct: 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 136
Query: 410 GLG----------QAYEMM-----HMPLYA----------------------LHYFRKSV 432
L QA E++ + P YA S+
Sbjct: 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 196
Query: 433 FLQPNDSRLWIAMAQCYETE-------QLHML-------EEAIKCYRRAANCNDSEAIAL 478
FL+ + L++A + T L +L ++A+ C+ A + ++ +
Sbjct: 197 FLEVKE--LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254
Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
N+L + EEA Y++ LE R N+ + I L H A F EA
Sbjct: 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
P+ C +G ++L G+++K+V F AL + N W +G + A+ AYRR
Sbjct: 168 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 227
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
A+++ P R+ Y LG + + A+ +F +++ +Q
Sbjct: 228 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 266
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
G ++ + P A+ + AV +P+ AW LG L A+ R+ + L+P+
Sbjct: 22 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 81
Query: 438 DSRLWIAMAQCYETEQLH 455
+ +A+A + E L
Sbjct: 82 NQTALMALAVSFTNESLQ 99
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 53/237 (22%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
+G +V+ F A++ D ++ AW +G E + AI A RR +++ P + A
Sbjct: 28 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 87
Query: 410 GLG----------QAYEMM-----HMPLYA----------------------LHYFRKSV 432
L QA E++ + P YA S+
Sbjct: 88 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 147
Query: 433 FLQPNDSRLWIAMAQCYETE-------QLHML-------EEAIKCYRRAANCNDSEAIAL 478
FL+ + L++A + T L +L ++A+ C+ A + ++ +
Sbjct: 148 FLEVKE--LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 205
Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
N+L + EEA Y++ LE R N+ + I L H A F EA
Sbjct: 206 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 262
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNT 387
+V D E+ +G Y G ++ ++ + LD A+ ++G +
Sbjct: 30 KVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK 89
Query: 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447
AAIDA +RA+ +N A+Y LG Y+ M A+ + K++ ++P R + ++
Sbjct: 90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL 149
Query: 448 CYETEQLHMLEEAIKCY 464
YE + L +EA+K +
Sbjct: 150 AYEGKGLR--DEAVKYF 164
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM----DMYSNVLYAKECFSALSYLA 326
I I + + +F+ ++++L+ DP V+ + Y ++ + +L
Sbjct: 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLK--- 63
Query: 327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN 386
+ + D E+ I+G+ + + + ++ +RA+ L+ Y A+ +G Y M
Sbjct: 64 -KFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122
Query: 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428
AI+AY + + I P RA+ +G AYE + A+ YF
Sbjct: 123 HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 70/156 (44%), Gaps = 2/156 (1%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
IG+ KG + ++ +++ LK D N + +G Y+++ AI++ ++ V ++
Sbjct: 11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70
Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 462
A+Y LG A M+ A+ ++++ L + + + Y++ H ++AI+
Sbjct: 71 TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH--DKAIE 128
Query: 463 CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYY 498
Y + + A + + G +EA Y+
Sbjct: 129 AYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
P+ C +G ++L G+++K+V F AL + N W +G + A+ AYRR
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
A+++ P R+ Y LG + + A+ +F +++ +Q
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 275
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
G ++ + P A+ + AV +P+ AW LG L A+ R+ + L+P+
Sbjct: 31 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
Query: 438 DSRLWIAMAQCYETEQLH 455
+ +A+A + E L
Sbjct: 91 NQTALMALAVSFTNESLQ 108
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 53/237 (22%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
+G +V+ F A++ D ++ AW +G E + AI A RR +++ P + A
Sbjct: 37 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 96
Query: 410 GLG----------QAYEMM-----HMPLYA----------------------LHYFRKSV 432
L QA E + + P YA S+
Sbjct: 97 ALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 156
Query: 433 FLQPNDSRLWIAMAQCYETE-------QLHML-------EEAIKCYRRAANCNDSEAIAL 478
FL+ + L++A + T L +L ++A+ C+ A + ++ +
Sbjct: 157 FLEVKE--LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 214
Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
N+L + EEA Y++ LE R N+ + I L H A F EA
Sbjct: 215 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 271
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
P+ C +G ++L G+++K+V F AL + N W +G + A+ AYRR
Sbjct: 154 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 213
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
A+++ P R+ Y LG + + A+ +F +++ +Q
Sbjct: 214 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 252
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
G ++ + P A+ + AV +P+ AW LG L A+ R+ + L+P+
Sbjct: 8 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 67
Query: 438 DSRLWIAMAQCYETEQLH 455
+ +A+A + E L
Sbjct: 68 NQTALMALAVSFTNESLQ 85
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 53/237 (22%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
+G +V+ F A++ D ++ AW +G E + AI A RR +++ P + A
Sbjct: 14 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 73
Query: 410 GLG----------QAYEMM-----HMPLYA----------------------LHYFRKSV 432
L QA E++ + P YA S+
Sbjct: 74 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 133
Query: 433 FLQPNDSRLWIAMAQCYETE-------QLHML-------EEAIKCYRRAANCNDSEAIAL 478
FL+ + L++A + T L +L ++A+ C+ A + ++ +
Sbjct: 134 FLEVKE--LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 191
Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
N+L + EEA Y++ LE R N+ + I L H A F EA
Sbjct: 192 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 248
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 303 VDDMDMYSNVLY--AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
+DD+++ S + A + L H + + +G Y+L ++ +
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
RRA++L + W +G A+DAY RA+DINP R Y + +Y M
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 421 PLYALHYFRKSVFLQ 435
A +++++Q
Sbjct: 256 YDLAAKQLVRAIYMQ 270
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY 405
+++ ++ + AL+++ N +G Y N +A RRAV++ P D
Sbjct: 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449
+ W LG + P AL + +++ + P R+ MA Y
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%)
Query: 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396
P+ C +G ++L G+++K+V F AL + N W +G + A+ AYRR
Sbjct: 177 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 236
Query: 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435
A+++ P R+ Y LG + + A+ +F +++ +Q
Sbjct: 237 ALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 275
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
G ++ + P A+ + AV +P+ AW LG L A+ R+ + L+P+
Sbjct: 31 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 90
Query: 438 DSRLWIAMAQCYETEQLH 455
+ +A+A + E L
Sbjct: 91 NQTALMALAVSFTNESLQ 108
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 88/237 (37%), Gaps = 53/237 (22%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
+G +V+ F A++ D ++ AW +G E + AI A RR +++ P + A
Sbjct: 37 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 96
Query: 410 GLG----------QAYEMM-----HMPLYA----------------------LHYFRKSV 432
L QA E++ + P YA S+
Sbjct: 97 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL 156
Query: 433 FLQPNDSRLWIAMAQCYETE-------QLHML-------EEAIKCYRRAANCNDSEAIAL 478
FL+ + L++A + T L +L ++A+ C+ A + ++ +
Sbjct: 157 FLEVKE--LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 214
Query: 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA 535
N+L + EEA Y++ LE R N+ + I L H A F EA
Sbjct: 215 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 271
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 303 VDDMDMYSNVLY--AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360
+DD+++ S + A + L H + + +G Y+L ++ +
Sbjct: 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANL 195
Query: 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420
RRA++L + W +G A+DAY RA+DINP R Y + +Y M
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255
Query: 421 PLYALHYFRKSVFLQ 435
A +++++Q
Sbjct: 256 YDLAAKQLVRAIYMQ 270
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY 405
+++ ++ + AL+++ N +G Y N +A RRAV++ P D
Sbjct: 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449
+ W LG + P AL + +++ + P R+ MA Y
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 43/66 (65%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
E+ +GN Y +G +++++ Y+++AL+LD AW +G+ Y + + AI+ Y++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 398 VDINPR 403
++++PR
Sbjct: 64 LELDPR 69
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
AW +G+ Y + + AI+ Y++A++++PR AWY LG AY A+ Y++K++
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 433 FLQP 436
L P
Sbjct: 65 ELDP 68
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 465
AWY LG AY A+ Y++K++ L P + W + Y + + +EAI+ Y+
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY--DEAIEYYQ 61
Query: 466 RA 467
+A
Sbjct: 62 KA 63
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 54/101 (53%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
+G+ ++++++++ A+++ + A++ MG+ EM++ A+ Y RA+ INP A
Sbjct: 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450
L ++ A+ +R ++ L+P+ + +A C +
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW 442
E N A+ YR+A+++ P A L + AL ++++++ + P + +
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Query: 443 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL 502
M + ++ ++ A++CY RA N + A A + LA +H G EA Y+ L
Sbjct: 81 SNMGNTLK--EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
Query: 503 E 503
+
Sbjct: 139 K 139
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 1/169 (0%)
Query: 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF 330
+ +A+ Y +F+ + + DP+ + ++ L + L YL+H++
Sbjct: 24 VVVSLAERHYYNCDFKXCYKLTSVVXEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 331 MTDKYRPESCCIIGNYYSLKG-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA 389
P S +G YY G ++E + Y +A L+K Y AW GH +
Sbjct: 84 DLYPSNPVSWFAVGCYYLXVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143
Query: 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
A AY A + + +G Y + + A +F +++ + P D
Sbjct: 144 AXAAYFTAAQLXKGCHLPXLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 37/74 (50%)
Query: 377 MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436
+GH ++K A+D +R+A+ + P++ + +G + + A+ YF ++ L+
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRR 301
Query: 437 NDSRLWIAMAQCYE 450
+D+ + C E
Sbjct: 302 DDTFSVTXLGHCIE 315
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH 379
IG +SL G E +V YF AL L ++ + T +GH
Sbjct: 276 IGYIHSLXGNFENAVDYFHTALGLRRDDTFSVTXLGH 312
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAID 392
D P+ +G + L G+ +++ F AL + S W +G + A++
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Query: 393 AYRRAVDINPRDYRAWYGLG 412
AY RA++I P R+ Y LG
Sbjct: 269 AYTRALEIQPGFIRSRYNLG 288
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
+G ++++ A+ D AW +G E +N AAI A +R +++ P + +A
Sbjct: 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM 137
Query: 410 GLGQAY 415
L +Y
Sbjct: 138 ALAVSY 143
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 350 KGQHEKSVVYFRRALKL-------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
K + ++ +F+ AL L +K + + W +GH Y ++K AAIDA + + ++
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547
Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
D + Y +P A+ + +S+ + PN+
Sbjct: 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457
VD +P W +G Y ++ A YF KS + P WI A + E H
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH-- 423
Query: 458 EEAIKCYRRAA 468
++AI Y AA
Sbjct: 424 DQAISAYTTAA 434
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 59/150 (39%)
Query: 285 FEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344
F V I ++L DPY +D ++ L+ + L +++ + + + +G
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380
Query: 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404
YY + ++ YF ++ +D + AW H + AI AY A +
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440
Query: 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFL 434
+ + LG + + L A Y + S L
Sbjct: 441 HLPYLFLGMQHMQLGNILLANEYLQSSYAL 470
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 475 AIALNQLAKLHHALGRDEEAAFYYKKDLE-RMEAEEREGPNMVEALIFLATHCRAHGRFE 533
A LN LA L+ G+ +EA K+ LE R + ++ P++ + L LA C+ G++E
Sbjct: 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170
Query: 534 EAEVYCTRLLD 544
E E Y R L+
Sbjct: 171 EVEYYYQRALE 181
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 10/155 (6%)
Query: 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409
KGQ ++ ++ A+ D L + +G + N P AI + + D + +Y
Sbjct: 87 KGQDSLAIQQYQAAVDRDTTRLDXYGQIGSYFYNKGNFPLAIQYXEKQIRPTTTDPKVFY 146
Query: 410 GLGQAYEMMHMPLYALHYFRKSVFLQPN--DSRLWIA---MAQCYETEQ---LHMLEEAI 461
LGQAY + A F K + L+PN LW A AQ +T+Q E+ I
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
Query: 462 K-CYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495
+ C A D E I N+ ++ + RD+ A
Sbjct: 207 EVCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKA 240
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399
YS GQHEK+ A +D Y AW+ +G +M + A +AY + ++
Sbjct: 55 YSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413
E +V ++ +A++L+ + Y ++ N A+ RA+ I+P +A+ +G
Sbjct: 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88
Query: 414 AYEMMHMPLYALHYFRKSVFLQPND----SRLWIA 444
A ++ + A+ Y++K++ L P++ S L IA
Sbjct: 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437
G+E ++++N AA+ Y +A+++NP + + AY + A+ +++ + P
Sbjct: 19 GNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78
Query: 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467
S+ + M + H+ EA+ Y++A
Sbjct: 79 YSKAYGRMGLALSSLNKHV--EAVAYYKKA 106
>pdb|1UUR|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
pdb|1UUS|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
Length = 473
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 353 HEKSVVYFRRALKLDKNYLSAW--------TLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404
HE+S++ R LD+N L+ TL G EM +A+DA ++ + + P D
Sbjct: 33 HEQSLLLNRLPPTLDENSLAPLKSLSQKQITLSGQMNTEM----SALDATKKGMILEPTD 88
Query: 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439
+ L Q ++ L LH +S+ L P S
Sbjct: 89 LAKLFALKQDLQIQFKQLSLLHNEIQSI-LNPQHS 122
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398
+ C G ++ LK + V + ++ L +++ + + +N+ +++AV
Sbjct: 241 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAV 299
Query: 399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446
D+NP +Y GQ Y ++ A F+K+ L P + +I +A
Sbjct: 300 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 347
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398
+ C G ++ LK + V + ++ L +++ + + +N+ +++AV
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAV 303
Query: 399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446
D+NP +Y GQ Y ++ A F+K+ L P + +I +A
Sbjct: 304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438
H++ +N A + A + + NP++ W LG+ Y + +L +R+++ L+ +
Sbjct: 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77
Query: 439 SRLWIAMAQC--YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482
+ L+ A+A Y+ Q HM + +A + +E AL LA
Sbjct: 78 AELYAALATVLYYQASQ-HMTAQTRAMIDKALALDSNEITALMLLA 122
>pdb|4FZN|A Chain A, Crystal Structure Of Syringacin M Mutant D232a From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 283
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
+ R +DKN AWT G I A+ D NP ++R W G
Sbjct: 204 ITLRLVGTIDKNASGAWTFSGE-----------IRAFNAVYDANPSNHRGWLG 245
>pdb|4FZM|A Chain A, Crystal Structure Of The Bacteriocin Syringacin M From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 284
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
+ R +DKN AWT G I A+ D NP ++R W G
Sbjct: 205 ITLRLVGTIDKNASGAWTFSGE-----------IRAFNDVYDANPSNHRGWLG 246
>pdb|4FZL|A Chain A, High Resolution Structure Of Truncated Bacteriocin
Syringacin M From Pseudomonas Syringae Pv. Tomato Dc3000
pdb|4FZL|B Chain B, High Resolution Structure Of Truncated Bacteriocin
Syringacin M From Pseudomonas Syringae Pv. Tomato Dc3000
Length = 247
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410
+ R +DKN AWT G I A+ D NP ++R W G
Sbjct: 168 ITLRLVGTIDKNASGAWTFSGE-----------IRAFNDVYDANPSNHRGWLG 209
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 31/174 (17%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRAL-----------------KLDKNYLSAWT----- 375
+S IGN Y G +K++ Y++++L +L K A+
Sbjct: 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA 139
Query: 376 ----LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY-EMMHMPLYALHYFRK 430
L G EY + P A+ AY + P D R + A ++M P A+ K
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP-EAIADCNK 198
Query: 431 SVFLQPNDSRLWI--AMAQCYETEQLHMLEEAIKCYRRAANCND-SEAIALNQL 481
++ PN R +I A AQ E LE + A N+ S A ++QL
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 349 LKGQ-HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP----- 402
++GQ + ++ ALK D AW + Y +K A +++R+A+ I P
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78
Query: 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA---MAQCYETEQLHMLEE 459
+ W+ G+ ++ P ++ YF K++ P +IA C + L E
Sbjct: 79 NNNYGWFLCGR----LNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAE 133
Query: 460 AIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 506
A +R+ A +LA+ G+ +A +Y+KK R+E
Sbjct: 134 AY--LKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178
>pdb|2HR2|A Chain A, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|B Chain B, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|C Chain C, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|D Chain D, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|E Chain E, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|F Chain F, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
Length = 159
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 32/107 (29%)
Query: 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466
A GL E +H ALHYF + L ++ +LWI+
Sbjct: 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY------------------- 106
Query: 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 513
S A+AL+ LGR EA +KK +E +E + E P
Sbjct: 107 ------SRALALD-------GLGRGAEAXPEFKKVVEXIEERKGETP 140
>pdb|1HZ4|A Chain A, Crystal Structure Of Transcription Factor Malt Domain Iii
Length = 373
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 265 FSFSNYIQAQ---IAKAQYSLREFEQVEVIFEELLRN 298
F+ ++++Q Q IA+AQ L EFE E++ EEL N
Sbjct: 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282
>pdb|2FYF|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|2FYF|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|A Chain A, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
pdb|3VOM|B Chain B, Structure Of A Putative Phosphoserine Aminotransferase
From Mycobacterium Tuberculosis
Length = 398
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 18 LSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIR-RRFRTNDITSTPVAGVS 76
L + LY A + A+QL + P P + RF G S +R + +T T+ + G S
Sbjct: 11 LESTSLYKKAGFMADQLTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAAALFGTS 70
Query: 77 YVSTPV 82
+ PV
Sbjct: 71 HRQAPV 76
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY-EMMHMPLYALHYFRKSVFL 434
L G EY + P A+ AY + P D R + A ++M P A+ K++
Sbjct: 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP-EAIADCNKAIEK 67
Query: 435 QPNDSRLWI--AMAQCYETEQLHMLEEAIKCYRRAANCND-SEAIALNQL 481
PN R +I A AQ E LE + A N+ S A ++QL
Sbjct: 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 117
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 322 LSYLAHRVFMTDKYRPESCC---------IIGNYYSLKG-------QHEKSVVYFRRALK 365
L +R+F+ KY + C ++ YY+ + Q E+++ RRAL+
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI 400
LD + A +G +EM++ AI +RA +
Sbjct: 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 367 DKNYLS----AWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
D N LS A L H V+M N + IDAY+R D+NP
Sbjct: 206 DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNP 245
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 322 LSYLAHRVFMTDKYRPESCC---------IIGNYYSLKG-------QHEKSVVYFRRALK 365
L +R+F+ KY + C ++ YY+ + Q E+++ RRAL+
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397
LD + A +G +EM++ AI +RA
Sbjct: 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 98
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 430 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489
K++ LQ D+R +AQ +Q E + ++ A+ N +A QLA H +G
Sbjct: 175 KTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAD-NPQDAALATQLALQLHQVG 233
Query: 490 RDEEAA----FYYKKDLERMEAEERE 511
R+EEA + +KDL E + R+
Sbjct: 234 RNEEALELLFSHLRKDLTAAEGQTRK 259
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNY-------LSAWTLMGHEYVEMKNTPAAIDAYR 395
+GN Y G+ E + Y+++ L L + S ++L G+ Y +++ AID +
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL-GNTYTLLQDYEKAIDYHL 291
Query: 396 R----AVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSV 432
+ A ++N R + RA + LG AY + A+H+ K +
Sbjct: 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 398 VDINPRDY----RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453
VD NP +Y Y G E + + F K++ L P +S+ W+ +
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDL-------FEKAIQLDPEESKYWLMKGKA--LYN 52
Query: 454 LHMLEEAIKCYRRAANCNDSE 474
L EEA+ CY N + E
Sbjct: 53 LERYEEAVDCYNYVINVIEDE 73
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 409 YGLGQAYEMMHMPLYALHYFRKS-VFLQPNDSR----LWIAMAQCYETEQLHM 456
Y LG +M H P Y F+ S +F PN + +W +A+ Y E+ H+
Sbjct: 81 YNLGLVLDMHHAPGYRFQDFKTSTLFEDPNQQKRFVDIWRFLAKRYINEREHI 133
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 409 YGLGQAYEMMHMPLYALHYFRKS-VFLQPNDSR----LWIAMAQCYETEQLHM 456
Y LG +M H P Y F+ S +F PN + +W +A+ Y E+ H+
Sbjct: 81 YNLGLVLDMHHAPGYRFQDFKTSTLFEDPNQQKRFVDIWRFLAKRYINEREHI 133
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402
+GN + EK+ V++ +A++LD + ++ + Y E K + +AV++
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG- 72
Query: 403 RDYRAWYGL--------GQAYEMMHMPLYALHYFRKSV 432
R+ RA Y L G A++ + A+ +F +S+
Sbjct: 73 RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM-DMYSNVLYAKECFSALSYL 325
Q+A + LR+ ++ E++F E++ Y D++ DMYS+ L E + + +L
Sbjct: 72 QVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSSYLVGDELWVVMEFL 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,119,852
Number of Sequences: 62578
Number of extensions: 644347
Number of successful extensions: 1691
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 184
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)