Query 008705
Match_columns 557
No_of_seqs 1111 out of 2913
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 15:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1155 Anaphase-promoting com 100.0 4.6E-70 9.9E-75 496.2 51.8 517 3-553 21-543 (559)
2 KOG4626 O-linked N-acetylgluco 100.0 2E-46 4.4E-51 352.7 31.3 435 91-557 49-496 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 2.8E-44 6.1E-49 338.3 32.1 390 158-557 64-462 (966)
4 KOG1173 Anaphase-promoting com 100.0 1.4E-35 2.9E-40 278.1 41.6 483 8-549 16-522 (611)
5 KOG1126 DNA-binding cell divis 100.0 8.3E-37 1.8E-41 292.5 29.5 302 241-551 325-626 (638)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 8.8E-35 1.9E-39 322.0 50.6 443 90-544 431-899 (899)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.7E-35 2.1E-39 321.6 50.6 451 87-549 360-870 (899)
8 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-34 2.9E-39 302.6 46.0 397 93-548 130-574 (615)
9 PRK11447 cellulose synthase su 100.0 2.8E-33 6.2E-38 310.9 54.5 427 92-547 114-702 (1157)
10 PRK11447 cellulose synthase su 100.0 7E-34 1.5E-38 315.8 47.9 443 85-546 176-741 (1157)
11 TIGR00990 3a0801s09 mitochondr 100.0 7E-33 1.5E-37 289.7 43.7 340 176-550 127-542 (615)
12 PRK15174 Vi polysaccharide exp 100.0 4.2E-32 9E-37 282.6 41.6 322 154-503 54-380 (656)
13 PRK15174 Vi polysaccharide exp 100.0 9.7E-32 2.1E-36 279.9 41.5 342 174-550 40-386 (656)
14 KOG1174 Anaphase-promoting com 100.0 9.2E-29 2E-33 223.4 43.2 369 174-551 128-506 (564)
15 KOG2002 TPR-containing nuclear 100.0 3.5E-29 7.6E-34 248.8 37.1 432 90-548 307-801 (1018)
16 KOG0547 Translocase of outer m 100.0 3E-29 6.6E-34 231.3 31.8 337 176-546 115-567 (606)
17 KOG2002 TPR-containing nuclear 100.0 2.5E-28 5.5E-33 242.8 39.9 437 91-555 42-534 (1018)
18 PRK10049 pgaA outer membrane p 100.0 6E-28 1.3E-32 257.0 43.1 356 161-552 34-463 (765)
19 PRK09782 bacteriophage N4 rece 100.0 8.3E-27 1.8E-31 248.0 48.2 450 84-549 72-710 (987)
20 PRK09782 bacteriophage N4 rece 100.0 4.9E-27 1.1E-31 249.7 45.8 442 90-550 247-745 (987)
21 KOG0547 Translocase of outer m 100.0 3.4E-27 7.4E-32 217.8 35.9 389 94-504 119-566 (606)
22 KOG1155 Anaphase-promoting com 100.0 4.9E-26 1.1E-30 209.0 40.0 362 90-503 164-535 (559)
23 KOG1126 DNA-binding cell divis 100.0 1.2E-27 2.5E-32 230.0 27.6 300 177-503 318-619 (638)
24 PRK10049 pgaA outer membrane p 100.0 9.1E-26 2E-30 240.3 44.9 320 165-520 106-465 (765)
25 PRK11788 tetratricopeptide rep 100.0 6.5E-26 1.4E-30 225.7 37.3 303 173-544 32-346 (389)
26 KOG2003 TPR repeat-containing 99.9 2E-25 4.2E-30 204.3 26.4 428 92-549 203-693 (840)
27 PRK14574 hmsH outer membrane p 99.9 6.1E-23 1.3E-27 214.3 46.5 406 91-552 35-520 (822)
28 KOG1173 Anaphase-promoting com 99.9 4.8E-24 1E-28 200.9 33.9 366 92-525 143-532 (611)
29 PRK11788 tetratricopeptide rep 99.9 1E-24 2.3E-29 217.0 31.5 274 237-550 37-316 (389)
30 KOG0624 dsRNA-activated protei 99.9 3.3E-24 7.2E-29 189.7 29.3 325 172-549 34-374 (504)
31 PF04049 APC8: Anaphase promot 99.9 9.9E-27 2.2E-31 188.7 12.0 137 3-157 5-141 (142)
32 KOG1174 Anaphase-promoting com 99.9 1.8E-21 3.8E-26 176.6 36.6 480 11-530 3-519 (564)
33 KOG0548 Molecular co-chaperone 99.9 2.1E-22 4.5E-27 189.3 30.9 202 340-551 227-461 (539)
34 KOG0548 Molecular co-chaperone 99.9 1.5E-21 3.2E-26 183.6 35.1 411 96-542 8-486 (539)
35 KOG0495 HAT repeat protein [RN 99.9 2.2E-20 4.7E-25 178.7 42.5 390 161-554 425-854 (913)
36 KOG2076 RNA polymerase III tra 99.9 1.4E-21 3E-26 194.0 35.2 336 177-546 140-513 (895)
37 PRK14574 hmsH outer membrane p 99.9 8.4E-21 1.8E-25 198.4 42.8 370 171-550 29-484 (822)
38 KOG0495 HAT repeat protein [RN 99.9 6.6E-21 1.4E-25 182.2 37.8 362 173-548 513-883 (913)
39 KOG1129 TPR repeat-containing 99.9 4.6E-22 1E-26 175.1 27.4 235 273-551 227-464 (478)
40 KOG2076 RNA polymerase III tra 99.9 4.7E-21 1E-25 190.3 36.5 363 154-543 151-553 (895)
41 PF13429 TPR_15: Tetratricopep 99.9 5.3E-24 1.2E-28 200.8 13.8 261 180-503 12-276 (280)
42 PF13429 TPR_15: Tetratricopep 99.9 6.9E-24 1.5E-28 200.0 12.9 261 240-545 13-277 (280)
43 KOG2003 TPR repeat-containing 99.9 3.6E-21 7.9E-26 176.5 29.5 284 239-531 423-709 (840)
44 KOG4162 Predicted calmodulin-b 99.9 4.3E-20 9.3E-25 180.5 38.7 375 173-556 320-794 (799)
45 PLN03218 maturation of RBCL 1; 99.9 8.9E-19 1.9E-23 188.3 50.6 395 95-546 375-784 (1060)
46 KOG1125 TPR repeat-containing 99.9 3.4E-22 7.5E-27 189.5 21.6 255 178-459 287-560 (579)
47 PLN03081 pentatricopeptide (PP 99.9 8.3E-20 1.8E-24 194.3 42.1 433 93-546 90-558 (697)
48 TIGR00540 hemY_coli hemY prote 99.9 4.8E-20 1E-24 182.7 36.4 298 180-505 88-400 (409)
49 PRK12370 invasion protein regu 99.9 9.9E-21 2.2E-25 194.6 32.5 265 175-503 257-534 (553)
50 PRK12370 invasion protein regu 99.9 4.6E-21 9.9E-26 197.1 30.0 252 249-546 275-536 (553)
51 KOG0624 dsRNA-activated protei 99.9 1.2E-20 2.5E-25 167.3 28.2 304 151-481 47-381 (504)
52 TIGR00540 hemY_coli hemY prote 99.9 5.5E-20 1.2E-24 182.3 36.0 296 240-545 89-399 (409)
53 PRK11189 lipoprotein NlpI; Pro 99.9 3.3E-21 7.1E-26 181.8 24.3 237 282-555 39-275 (296)
54 KOG1129 TPR repeat-containing 99.9 7.6E-22 1.6E-26 173.7 17.4 249 234-526 222-473 (478)
55 KOG4162 Predicted calmodulin-b 99.9 4.6E-19 9.9E-24 173.4 34.9 304 173-503 430-782 (799)
56 PLN03218 maturation of RBCL 1; 99.9 7.5E-18 1.6E-22 181.3 45.2 363 173-546 368-749 (1060)
57 PRK10747 putative protoheme IX 99.9 1.5E-18 3.2E-23 171.1 35.7 294 239-546 88-391 (398)
58 COG3063 PilF Tfp pilus assembl 99.9 1.2E-19 2.7E-24 153.0 23.2 206 337-551 35-242 (250)
59 PRK10747 putative protoheme IX 99.9 2.1E-18 4.5E-23 170.1 35.4 293 155-504 97-390 (398)
60 TIGR02521 type_IV_pilW type IV 99.9 2E-19 4.3E-24 165.6 26.2 202 336-546 30-233 (234)
61 PRK11189 lipoprotein NlpI; Pro 99.9 3.3E-19 7.2E-24 168.2 27.7 237 248-531 39-286 (296)
62 KOG0550 Molecular chaperone (D 99.9 8.4E-20 1.8E-24 166.1 22.3 271 176-473 49-353 (486)
63 KOG1156 N-terminal acetyltrans 99.9 1.9E-17 4.2E-22 159.1 38.8 429 89-545 6-511 (700)
64 KOG1125 TPR repeat-containing 99.9 4.1E-20 8.9E-25 175.5 20.0 254 239-494 289-561 (579)
65 PLN03077 Protein ECB2; Provisi 99.8 3.1E-17 6.8E-22 178.9 42.1 429 92-545 255-720 (857)
66 PLN03081 pentatricopeptide (PP 99.8 2.3E-17 4.9E-22 175.7 39.6 295 174-503 257-556 (697)
67 COG2956 Predicted N-acetylgluc 99.8 7.1E-18 1.5E-22 148.9 29.1 296 179-503 38-346 (389)
68 KOG1156 N-terminal acetyltrans 99.8 3.5E-17 7.5E-22 157.4 36.2 350 163-550 28-439 (700)
69 COG3063 PilF Tfp pilus assembl 99.8 3.1E-18 6.8E-23 144.6 24.2 207 269-518 35-243 (250)
70 TIGR02521 type_IV_pilW type IV 99.8 2.8E-18 6.1E-23 157.8 26.5 200 268-503 30-231 (234)
71 KOG1840 Kinesin light chain [C 99.8 2.2E-17 4.8E-22 161.5 31.8 252 265-544 195-478 (508)
72 KOG1127 TPR repeat-containing 99.8 3E-17 6.4E-22 164.4 32.7 227 317-545 472-700 (1238)
73 PLN03077 Protein ECB2; Provisi 99.8 2E-16 4.2E-21 172.7 41.5 433 93-550 225-691 (857)
74 PLN02789 farnesyltranstransfer 99.8 3.6E-18 7.8E-23 160.3 23.6 239 283-547 34-304 (320)
75 COG2956 Predicted N-acetylgluc 99.8 3.5E-17 7.5E-22 144.6 27.6 262 238-503 38-310 (389)
76 cd05804 StaR_like StaR_like; a 99.8 6.2E-17 1.4E-21 159.0 32.7 320 172-546 2-337 (355)
77 KOG1127 TPR repeat-containing 99.8 1.1E-17 2.3E-22 167.6 26.8 318 189-541 471-909 (1238)
78 KOG0550 Molecular chaperone (D 99.8 2.1E-18 4.6E-23 157.0 19.5 261 241-503 55-349 (486)
79 KOG1915 Cell cycle control pro 99.8 1.1E-14 2.4E-19 135.1 43.5 423 95-549 78-540 (677)
80 KOG3785 Uncharacterized conser 99.8 3.8E-16 8.3E-21 139.5 31.8 297 239-549 155-494 (557)
81 PLN02789 farnesyltranstransfer 99.8 8E-17 1.7E-21 151.2 28.6 209 184-451 45-267 (320)
82 KOG1840 Kinesin light chain [C 99.8 9.4E-17 2E-21 157.2 26.1 265 231-523 195-499 (508)
83 KOG2376 Signal recognition par 99.7 4.1E-14 9E-19 135.1 36.8 362 154-551 24-493 (652)
84 KOG1915 Cell cycle control pro 99.7 1.5E-13 3.2E-18 127.8 36.9 359 173-546 70-501 (677)
85 KOG2376 Signal recognition par 99.7 7.7E-13 1.7E-17 126.6 37.9 416 89-541 45-516 (652)
86 KOG3785 Uncharacterized conser 99.7 6.5E-14 1.4E-18 125.5 28.8 313 186-541 32-453 (557)
87 TIGR03302 OM_YfiO outer membra 99.7 4.6E-15 1E-19 136.3 22.7 192 333-547 29-234 (235)
88 PF12569 NARP1: NMDA receptor- 99.7 8.8E-14 1.9E-18 138.3 31.9 303 238-546 7-335 (517)
89 PRK15359 type III secretion sy 99.7 1E-15 2.2E-20 127.5 14.9 127 357-488 13-139 (144)
90 TIGR03302 OM_YfiO outer membra 99.7 9.6E-15 2.1E-19 134.2 21.8 114 172-307 29-153 (235)
91 cd05804 StaR_like StaR_like; a 99.7 1.3E-13 2.8E-18 135.4 30.7 277 231-546 2-294 (355)
92 PF12569 NARP1: NMDA receptor- 99.7 6.7E-13 1.4E-17 132.0 34.3 302 176-507 4-337 (517)
93 PRK15359 type III secretion sy 99.6 4.5E-15 9.8E-20 123.6 14.9 128 390-529 12-139 (144)
94 COG5010 TadD Flp pilus assembl 99.6 3.1E-14 6.7E-19 123.5 20.2 177 356-542 52-228 (257)
95 KOG1130 Predicted G-alpha GTPa 99.6 2.7E-15 5.9E-20 136.8 14.2 274 241-545 23-344 (639)
96 COG5010 TadD Flp pilus assembl 99.6 8E-14 1.7E-18 120.9 21.2 173 328-503 58-230 (257)
97 COG3071 HemY Uncharacterized e 99.6 8.9E-12 1.9E-16 114.3 34.9 292 242-546 91-391 (400)
98 KOG1128 Uncharacterized conser 99.6 8.7E-14 1.9E-18 136.2 22.7 225 230-471 393-617 (777)
99 PRK10370 formate-dependent nit 99.6 4.1E-14 8.8E-19 124.4 18.3 149 343-504 22-173 (198)
100 PRK14720 transcript cleavage f 99.6 1.3E-13 2.8E-18 143.0 24.7 266 204-549 25-310 (906)
101 KOG3060 Uncharacterized conser 99.6 3.6E-12 7.7E-17 109.6 28.5 183 232-448 49-234 (289)
102 PRK10370 formate-dependent nit 99.6 9.2E-14 2E-18 122.1 19.6 126 349-476 51-179 (198)
103 KOG1130 Predicted G-alpha GTPa 99.6 5.6E-14 1.2E-18 128.3 18.0 303 179-533 20-372 (639)
104 COG3071 HemY Uncharacterized e 99.6 2E-11 4.4E-16 111.9 33.8 294 154-503 96-389 (400)
105 KOG3060 Uncharacterized conser 99.6 1.4E-12 3.1E-17 112.0 23.7 155 347-503 62-219 (289)
106 PRK04841 transcriptional regul 99.6 2.9E-11 6.3E-16 134.0 39.7 327 173-550 406-765 (903)
107 KOG4340 Uncharacterized conser 99.6 8.7E-13 1.9E-17 115.7 20.9 186 187-399 21-206 (459)
108 KOG1128 Uncharacterized conser 99.6 2.6E-13 5.6E-18 132.9 19.3 222 265-503 394-615 (777)
109 KOG2047 mRNA splicing factor [ 99.6 1.9E-10 4.1E-15 111.3 37.8 408 95-550 253-692 (835)
110 PRK14720 transcript cleavage f 99.5 1.3E-12 2.8E-17 135.6 23.1 225 263-528 25-269 (906)
111 PRK15179 Vi polysaccharide bio 99.5 2.2E-12 4.7E-17 133.3 23.4 139 364-504 79-217 (694)
112 PRK15179 Vi polysaccharide bio 99.5 2.2E-12 4.7E-17 133.2 23.5 195 336-550 27-222 (694)
113 PF04733 Coatomer_E: Coatomer 99.5 3.7E-13 8.1E-18 125.1 16.0 258 242-517 8-271 (290)
114 TIGR02552 LcrH_SycD type III s 99.5 6.2E-13 1.3E-17 110.6 15.1 117 358-476 4-120 (135)
115 KOG2047 mRNA splicing factor [ 99.5 9.3E-10 2E-14 106.7 38.3 392 122-554 156-624 (835)
116 TIGR02552 LcrH_SycD type III s 99.5 1.4E-12 3E-17 108.4 15.2 118 392-518 4-121 (135)
117 KOG0553 TPR repeat-containing 99.5 1.1E-12 2.4E-17 116.1 13.5 114 338-451 82-195 (304)
118 PRK15363 pathogenicity island 99.5 3E-12 6.5E-17 104.0 14.8 106 364-471 27-133 (157)
119 KOG0553 TPR repeat-containing 99.4 2.2E-12 4.8E-17 114.2 13.2 119 372-492 82-200 (304)
120 PF04733 Coatomer_E: Coatomer 99.4 6.7E-12 1.5E-16 116.7 17.2 232 90-406 35-271 (290)
121 PRK15363 pathogenicity island 99.4 8.6E-12 1.9E-16 101.4 15.4 107 397-505 26-133 (157)
122 KOG4340 Uncharacterized conser 99.4 1.5E-10 3.3E-15 101.8 21.2 282 246-539 21-333 (459)
123 COG4783 Putative Zn-dependent 99.4 1.7E-10 3.6E-15 109.0 22.2 126 368-495 303-428 (484)
124 KOG1941 Acetylcholine receptor 99.4 5.8E-10 1.3E-14 100.8 24.4 315 176-544 6-359 (518)
125 COG4783 Putative Zn-dependent 99.4 4.6E-10 1E-14 106.1 24.0 152 334-504 303-454 (484)
126 PRK04841 transcriptional regul 99.3 3.9E-09 8.5E-14 117.1 35.3 282 176-505 452-761 (903)
127 PLN03088 SGT1, suppressor of 99.3 8E-11 1.7E-15 113.8 15.3 112 340-451 5-116 (356)
128 PLN03088 SGT1, suppressor of 99.3 8.7E-11 1.9E-15 113.6 15.4 113 374-488 5-117 (356)
129 PF13525 YfiO: Outer membrane 99.3 1.1E-09 2.3E-14 97.3 21.0 178 174-390 3-197 (203)
130 PRK10866 outer membrane biogen 99.3 2.4E-09 5.1E-14 97.3 22.4 184 173-395 29-236 (243)
131 PRK10866 outer membrane biogen 99.2 4.2E-09 9E-14 95.7 21.7 164 336-501 31-238 (243)
132 PF14938 SNAP: Soluble NSF att 99.2 9.7E-09 2.1E-13 96.4 23.1 171 274-473 80-269 (282)
133 COG4785 NlpI Lipoprotein NlpI, 99.2 2.2E-09 4.7E-14 90.3 16.1 202 336-546 64-267 (297)
134 PF13525 YfiO: Outer membrane 99.2 4.1E-09 8.9E-14 93.6 19.1 176 269-494 5-197 (203)
135 TIGR02795 tol_pal_ybgF tol-pal 99.1 1E-09 2.2E-14 88.9 13.3 103 338-440 3-111 (119)
136 COG4235 Cytochrome c biogenesi 99.1 1.5E-09 3.3E-14 97.3 15.2 120 385-504 136-256 (287)
137 PF14938 SNAP: Soluble NSF att 99.1 1.1E-09 2.5E-14 102.7 15.2 168 378-548 42-228 (282)
138 CHL00033 ycf3 photosystem I as 99.1 1.6E-09 3.5E-14 93.4 15.1 108 405-514 35-152 (168)
139 COG4235 Cytochrome c biogenesi 99.1 1.8E-09 3.9E-14 96.8 15.5 121 352-474 137-260 (287)
140 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.3E-09 2.8E-14 88.3 13.3 106 371-478 2-113 (119)
141 KOG3081 Vesicle coat complex C 99.1 6.7E-08 1.4E-12 84.4 23.9 259 240-517 13-277 (299)
142 KOG1941 Acetylcholine receptor 99.1 1.2E-08 2.5E-13 92.6 19.7 275 241-546 12-321 (518)
143 PRK10153 DNA-binding transcrip 99.1 5.1E-09 1.1E-13 105.4 18.1 133 341-476 343-488 (517)
144 CHL00033 ycf3 photosystem I as 99.1 3.2E-09 7E-14 91.6 14.5 120 353-474 15-153 (168)
145 cd00189 TPR Tetratricopeptide 99.1 1.8E-09 3.8E-14 83.4 11.8 96 374-471 3-98 (100)
146 PRK02603 photosystem I assembl 99.1 2E-09 4.3E-14 93.1 13.1 96 370-467 34-132 (172)
147 cd00189 TPR Tetratricopeptide 99.1 1.6E-09 3.4E-14 83.7 11.4 99 339-437 2-100 (100)
148 PRK15331 chaperone protein Sic 99.1 2.6E-09 5.6E-14 87.4 12.7 110 363-475 29-138 (165)
149 KOG1070 rRNA processing protei 99.1 2.3E-08 4.9E-13 105.2 22.7 210 327-546 1448-1664(1710)
150 PF13414 TPR_11: TPR repeat; P 99.1 5.3E-10 1.1E-14 80.4 7.8 66 337-402 3-69 (69)
151 COG0457 NrfG FOG: TPR repeat [ 99.1 7.8E-07 1.7E-11 81.8 31.5 221 249-503 37-264 (291)
152 PF13414 TPR_11: TPR repeat; P 99.1 4.6E-10 1E-14 80.7 7.3 65 372-436 4-69 (69)
153 PRK02603 photosystem I assembl 99.1 3.7E-09 7.9E-14 91.5 14.2 119 334-474 32-153 (172)
154 KOG2471 TPR repeat-containing 99.1 4.2E-07 9E-12 85.9 28.2 141 242-382 213-380 (696)
155 COG4785 NlpI Lipoprotein NlpI, 99.1 8.9E-09 1.9E-13 86.7 15.4 107 173-304 62-168 (297)
156 KOG2053 Mitochondrial inherita 99.1 1.2E-05 2.6E-10 81.9 40.1 224 155-404 22-259 (932)
157 PF09976 TPR_21: Tetratricopep 99.1 1.4E-08 3E-13 85.1 16.6 117 417-543 23-145 (145)
158 PRK11906 transcriptional regul 99.1 9.3E-09 2E-13 98.1 17.2 149 352-502 273-434 (458)
159 PF09976 TPR_21: Tetratricopep 99.0 1.7E-08 3.6E-13 84.6 16.5 117 383-502 23-145 (145)
160 KOG3617 WD40 and TPR repeat-co 99.0 9.9E-07 2.1E-11 88.4 30.8 323 186-542 738-1171(1416)
161 COG0457 NrfG FOG: TPR repeat [ 99.0 5.8E-07 1.3E-11 82.7 28.7 203 337-548 59-268 (291)
162 PRK15331 chaperone protein Sic 99.0 6E-09 1.3E-13 85.2 12.6 105 397-503 29-133 (165)
163 PRK10153 DNA-binding transcrip 99.0 1.9E-08 4.2E-13 101.3 18.6 143 365-517 331-488 (517)
164 KOG0543 FKBP-type peptidyl-pro 99.0 8.1E-09 1.8E-13 95.9 13.7 142 341-503 212-354 (397)
165 KOG0543 FKBP-type peptidyl-pro 99.0 8.9E-09 1.9E-13 95.7 13.7 99 372-472 258-357 (397)
166 PRK11906 transcriptional regul 99.0 5.7E-08 1.2E-12 92.8 19.3 162 375-545 259-436 (458)
167 PF12895 Apc3: Anaphase-promot 99.0 1.8E-09 3.9E-14 80.9 7.6 80 418-500 2-83 (84)
168 KOG1070 rRNA processing protei 99.0 3.5E-07 7.7E-12 96.6 26.4 221 251-503 1440-1662(1710)
169 PF12895 Apc3: Anaphase-promot 99.0 1.2E-09 2.5E-14 81.9 6.4 81 384-467 2-84 (84)
170 PF13432 TPR_16: Tetratricopep 99.0 2.3E-09 5E-14 75.9 6.9 56 381-436 7-62 (65)
171 COG3898 Uncharacterized membra 98.9 6.7E-06 1.4E-10 75.9 30.1 296 176-503 84-391 (531)
172 KOG4648 Uncharacterized conser 98.9 1.1E-09 2.4E-14 98.3 5.7 228 179-440 100-336 (536)
173 COG4105 ComL DNA uptake lipopr 98.9 7.3E-07 1.6E-11 78.5 22.5 188 174-401 32-233 (254)
174 PF13432 TPR_16: Tetratricopep 98.9 4.7E-09 1E-13 74.3 7.4 64 410-475 2-65 (65)
175 PRK10803 tol-pal system protei 98.9 7.2E-08 1.6E-12 88.2 15.5 102 372-475 143-251 (263)
176 PF12688 TPR_5: Tetratrico pep 98.9 1.2E-07 2.6E-12 74.9 14.4 96 406-503 2-103 (120)
177 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 8.9E-08 1.9E-12 92.1 16.3 125 271-432 171-295 (395)
178 PRK10803 tol-pal system protei 98.9 8.7E-08 1.9E-12 87.7 15.5 106 337-442 142-254 (263)
179 COG3898 Uncharacterized membra 98.9 2.7E-05 5.9E-10 72.0 31.0 288 242-545 91-392 (531)
180 KOG3081 Vesicle coat complex C 98.9 2.1E-06 4.6E-11 75.2 22.4 254 276-547 15-273 (299)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 9.7E-08 2.1E-12 91.9 15.5 121 342-467 174-294 (395)
182 COG4700 Uncharacterized protei 98.8 2E-06 4.3E-11 71.0 20.1 160 344-507 63-225 (251)
183 PF12688 TPR_5: Tetratrico pep 98.8 1.1E-07 2.4E-12 75.1 12.6 95 373-469 3-103 (120)
184 KOG3617 WD40 and TPR repeat-co 98.8 1.5E-05 3.2E-10 80.4 29.9 265 177-503 859-1173(1416)
185 KOG2053 Mitochondrial inherita 98.8 1.7E-05 3.8E-10 80.9 30.6 288 187-500 20-333 (932)
186 COG4105 ComL DNA uptake lipopr 98.8 2.7E-06 5.8E-11 75.0 21.7 163 268-463 33-226 (254)
187 KOG4648 Uncharacterized conser 98.8 3.6E-09 7.7E-14 95.1 3.2 106 341-446 101-206 (536)
188 KOG4234 TPR repeat-containing 98.7 1.7E-07 3.8E-12 78.0 11.9 107 376-484 100-211 (271)
189 KOG1914 mRNA cleavage and poly 98.7 0.00023 5.1E-09 68.8 34.3 51 168-219 12-62 (656)
190 COG4700 Uncharacterized protei 98.7 2.8E-06 6E-11 70.2 17.9 153 381-544 66-221 (251)
191 PF13424 TPR_12: Tetratricopep 98.7 3.4E-08 7.3E-13 72.8 6.4 74 472-545 2-75 (78)
192 PF14559 TPR_19: Tetratricopep 98.7 4.3E-08 9.3E-13 70.1 6.8 53 385-437 5-57 (68)
193 PF14559 TPR_19: Tetratricopep 98.7 6.8E-08 1.5E-12 69.0 7.2 67 416-484 2-68 (68)
194 KOG2471 TPR repeat-containing 98.7 8.3E-06 1.8E-10 77.4 21.9 366 155-541 30-572 (696)
195 PF13371 TPR_9: Tetratricopept 98.7 1.5E-07 3.2E-12 68.4 8.3 64 413-478 3-66 (73)
196 PF13371 TPR_9: Tetratricopept 98.7 1.6E-07 3.5E-12 68.2 8.3 67 378-444 2-68 (73)
197 COG1729 Uncharacterized protei 98.6 8.5E-07 1.8E-11 78.9 14.1 99 376-476 146-250 (262)
198 PF13512 TPR_18: Tetratricopep 98.6 1.2E-06 2.5E-11 70.4 12.9 110 174-305 8-135 (142)
199 KOG4234 TPR repeat-containing 98.6 1.3E-06 2.7E-11 73.0 12.1 114 408-530 98-216 (271)
200 PF13512 TPR_18: Tetratricopep 98.6 2.6E-06 5.7E-11 68.4 13.3 88 268-386 9-99 (142)
201 COG1729 Uncharacterized protei 98.6 2E-06 4.3E-11 76.6 13.9 104 408-520 144-253 (262)
202 KOG1258 mRNA processing protei 98.5 0.0013 2.9E-08 64.9 35.7 367 159-552 62-477 (577)
203 KOG4555 TPR repeat-containing 98.5 8.9E-06 1.9E-10 63.0 13.7 98 374-473 46-147 (175)
204 KOG3616 Selective LIM binding 98.5 0.00021 4.6E-09 71.4 26.5 176 337-539 661-847 (1636)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 2.5E-06 5.4E-11 81.7 13.0 68 367-434 71-141 (453)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.8E-06 4E-11 82.6 11.7 70 400-471 70-142 (453)
207 KOG2610 Uncharacterized conser 98.4 2.1E-05 4.6E-10 71.2 17.2 161 378-543 110-274 (491)
208 KOG2796 Uncharacterized conser 98.4 9.9E-05 2.1E-09 64.7 20.5 145 339-485 179-333 (366)
209 KOG4555 TPR repeat-containing 98.4 6.8E-06 1.5E-10 63.6 12.0 93 409-503 47-143 (175)
210 KOG2796 Uncharacterized conser 98.4 0.00034 7.4E-09 61.5 23.5 145 352-504 164-315 (366)
211 PF06552 TOM20_plant: Plant sp 98.4 2.7E-06 5.9E-11 70.5 9.8 88 353-440 7-115 (186)
212 PF06552 TOM20_plant: Plant sp 98.4 3.6E-06 7.7E-11 69.8 10.3 95 387-483 7-122 (186)
213 COG5107 RNA14 Pre-mRNA 3'-end 98.4 0.0024 5.2E-08 60.7 36.1 422 85-551 37-537 (660)
214 KOG1586 Protein required for f 98.4 3.3E-05 7.2E-10 66.4 16.1 138 410-549 79-228 (288)
215 KOG3616 Selective LIM binding 98.4 0.0026 5.7E-08 63.9 31.5 321 177-546 662-1025(1636)
216 PF13424 TPR_12: Tetratricopep 98.4 8.7E-07 1.9E-11 65.2 5.6 64 439-504 5-75 (78)
217 PF10300 DUF3808: Protein of u 98.3 0.00043 9.2E-09 69.7 26.3 161 378-546 195-377 (468)
218 PF07079 DUF1347: Protein of u 98.3 0.0031 6.7E-08 60.1 37.8 408 97-542 13-521 (549)
219 KOG2610 Uncharacterized conser 98.3 0.0002 4.3E-09 65.1 20.9 160 242-432 110-274 (491)
220 KOG1585 Protein required for f 98.3 6.2E-05 1.3E-09 65.3 16.0 197 337-539 31-250 (308)
221 KOG1585 Protein required for f 98.3 0.00019 4.1E-09 62.3 18.6 199 270-499 32-251 (308)
222 KOG4507 Uncharacterized conser 98.3 7.1E-05 1.5E-09 72.8 17.8 128 161-311 198-325 (886)
223 KOG1586 Protein required for f 98.3 0.00044 9.6E-09 59.7 20.4 159 342-503 39-223 (288)
224 KOG1258 mRNA processing protei 98.3 0.0063 1.4E-07 60.4 31.9 311 193-537 62-421 (577)
225 PF04184 ST7: ST7 protein; In 98.3 8.3E-05 1.8E-09 71.5 17.6 97 405-503 259-374 (539)
226 PF05843 Suf: Suppressor of fo 98.2 5.1E-05 1.1E-09 71.0 15.8 136 339-476 3-142 (280)
227 KOG4642 Chaperone-dependent E3 98.2 1.1E-05 2.3E-10 69.6 9.9 93 342-434 15-107 (284)
228 PF04184 ST7: ST7 protein; In 98.2 0.00021 4.6E-09 68.8 19.0 131 372-503 260-413 (539)
229 KOG2300 Uncharacterized conser 98.2 0.0082 1.8E-07 57.7 37.0 413 91-545 8-514 (629)
230 PF05843 Suf: Suppressor of fo 98.2 5.4E-05 1.2E-09 70.9 14.2 129 373-503 3-135 (280)
231 PF13428 TPR_14: Tetratricopep 98.2 5.7E-06 1.2E-10 52.7 5.3 43 176-218 1-43 (44)
232 PF13281 DUF4071: Domain of un 98.1 0.0033 7.2E-08 60.0 25.1 32 441-474 307-338 (374)
233 KOG1914 mRNA cleavage and poly 98.1 0.012 2.5E-07 57.6 39.4 219 322-547 264-503 (656)
234 KOG4642 Chaperone-dependent E3 98.1 2.1E-05 4.6E-10 67.8 9.4 93 376-470 15-107 (284)
235 PF13428 TPR_14: Tetratricopep 98.1 7.7E-06 1.7E-10 52.1 5.1 39 408-446 4-42 (44)
236 PF02259 FAT: FAT domain; Int 98.1 0.0039 8.6E-08 61.0 26.6 140 405-553 146-346 (352)
237 PF13281 DUF4071: Domain of un 98.1 0.00049 1.1E-08 65.5 18.9 142 407-549 181-338 (374)
238 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.01 2.3E-07 56.5 26.6 366 164-545 30-495 (660)
239 KOG0890 Protein kinase of the 98.0 0.015 3.3E-07 66.5 32.0 162 374-546 1632-1834(2382)
240 KOG0376 Serine-threonine phosp 98.0 1.2E-05 2.5E-10 76.9 6.8 110 342-451 9-118 (476)
241 KOG0985 Vesicle coat protein c 98.0 0.0066 1.4E-07 63.5 26.4 316 182-536 1054-1374(1666)
242 KOG2300 Uncharacterized conser 98.0 0.017 3.8E-07 55.6 34.9 365 157-546 24-475 (629)
243 KOG0545 Aryl-hydrocarbon recep 98.0 0.00014 3.1E-09 63.0 12.2 112 176-302 178-297 (329)
244 KOG0376 Serine-threonine phosp 97.9 1.5E-05 3.3E-10 76.1 5.7 109 376-486 9-117 (476)
245 PF13431 TPR_17: Tetratricopep 97.9 1.2E-05 2.5E-10 47.7 3.0 30 395-424 3-32 (34)
246 KOG0530 Protein farnesyltransf 97.9 0.0062 1.4E-07 53.8 20.4 219 323-547 63-300 (318)
247 PF13431 TPR_17: Tetratricopep 97.9 1.2E-05 2.7E-10 47.5 2.8 32 464-495 2-33 (34)
248 PF10345 Cohesin_load: Cohesin 97.9 0.054 1.2E-06 57.1 36.5 201 342-545 306-563 (608)
249 KOG4507 Uncharacterized conser 97.9 0.00092 2E-08 65.4 16.4 103 416-527 618-721 (886)
250 PF10300 DUF3808: Protein of u 97.9 0.044 9.4E-07 55.4 37.8 159 345-506 196-378 (468)
251 COG0790 FOG: TPR repeat, SEL1 97.8 0.0067 1.4E-07 57.6 22.6 189 348-552 52-273 (292)
252 KOG0985 Vesicle coat protein c 97.8 0.05 1.1E-06 57.3 28.9 225 173-451 1101-1325(1666)
253 KOG1550 Extracellular protein 97.8 0.021 4.6E-07 59.1 27.1 281 251-551 228-544 (552)
254 KOG0530 Protein farnesyltransf 97.8 0.012 2.5E-07 52.2 20.8 197 288-485 62-269 (318)
255 PF02259 FAT: FAT domain; Int 97.8 0.0097 2.1E-07 58.3 23.7 67 333-399 142-212 (352)
256 KOG0545 Aryl-hydrocarbon recep 97.8 0.00066 1.4E-08 59.1 12.5 70 405-476 230-299 (329)
257 PF07719 TPR_2: Tetratricopept 97.7 5.8E-05 1.3E-09 45.0 4.4 34 176-209 1-34 (34)
258 PF00515 TPR_1: Tetratricopept 97.7 4.6E-05 9.9E-10 45.4 3.7 34 176-209 1-34 (34)
259 PF03704 BTAD: Bacterial trans 97.7 0.0016 3.5E-08 54.5 14.3 123 378-515 13-136 (146)
260 PF08631 SPO22: Meiosis protei 97.7 0.045 9.8E-07 51.3 26.0 235 280-543 4-273 (278)
261 PF00515 TPR_1: Tetratricopept 97.7 6.2E-05 1.3E-09 44.8 3.9 29 408-436 4-32 (34)
262 PF08424 NRDE-2: NRDE-2, neces 97.7 0.0068 1.5E-07 58.0 19.6 123 422-546 48-184 (321)
263 PF07719 TPR_2: Tetratricopept 97.6 0.00013 2.9E-09 43.3 4.5 29 408-436 4-32 (34)
264 COG3118 Thioredoxin domain-con 97.6 0.0085 1.8E-07 54.3 17.4 161 372-540 135-296 (304)
265 COG2976 Uncharacterized protei 97.6 0.0064 1.4E-07 51.5 15.3 116 424-549 71-192 (207)
266 COG3118 Thioredoxin domain-con 97.6 0.0037 8E-08 56.6 14.9 55 241-295 140-194 (304)
267 PRK15180 Vi polysaccharide bio 97.6 0.089 1.9E-06 50.9 26.9 126 155-305 302-427 (831)
268 COG2909 MalT ATP-dependent tra 97.6 0.078 1.7E-06 55.4 25.7 272 268-546 346-648 (894)
269 KOG0890 Protein kinase of the 97.5 0.27 5.9E-06 57.0 31.5 124 421-548 1645-1787(2382)
270 COG2909 MalT ATP-dependent tra 97.5 0.16 3.5E-06 53.1 29.4 248 268-543 414-686 (894)
271 PF10345 Cohesin_load: Cohesin 97.5 0.2 4.3E-06 52.9 34.3 106 175-300 58-170 (608)
272 KOG1308 Hsp70-interacting prot 97.5 0.00016 3.4E-09 66.2 4.8 92 345-436 122-213 (377)
273 PF03704 BTAD: Bacterial trans 97.5 0.0038 8.2E-08 52.2 13.0 115 340-469 9-124 (146)
274 KOG3783 Uncharacterized conser 97.4 0.029 6.4E-07 55.1 19.8 99 155-276 246-344 (546)
275 COG0790 FOG: TPR repeat, SEL1 97.4 0.12 2.5E-06 49.1 24.2 159 338-503 74-265 (292)
276 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0076 1.6E-07 55.2 14.5 105 176-301 81-185 (390)
277 KOG0551 Hsp90 co-chaperone CNS 97.4 0.00088 1.9E-08 61.1 8.5 99 337-435 81-183 (390)
278 KOG1308 Hsp70-interacting prot 97.3 0.00022 4.7E-09 65.3 4.3 94 378-473 121-214 (377)
279 KOG1550 Extracellular protein 97.3 0.031 6.8E-07 57.9 19.6 117 351-471 263-394 (552)
280 PF04910 Tcf25: Transcriptiona 97.2 0.02 4.3E-07 55.5 16.2 168 330-504 33-222 (360)
281 PF12968 DUF3856: Domain of Un 97.2 0.033 7.1E-07 42.9 13.5 105 441-545 9-129 (144)
282 PF13181 TPR_8: Tetratricopept 97.1 0.00066 1.4E-08 40.3 3.6 33 177-209 2-34 (34)
283 COG2976 Uncharacterized protei 97.1 0.032 7E-07 47.3 14.5 55 240-294 94-151 (207)
284 PF13181 TPR_8: Tetratricopept 97.1 0.0009 1.9E-08 39.7 3.7 29 408-436 4-32 (34)
285 PF08424 NRDE-2: NRDE-2, neces 97.1 0.041 8.8E-07 52.7 17.0 115 389-503 49-182 (321)
286 KOG2041 WD40 repeat protein [G 97.0 0.46 9.9E-06 48.4 28.4 162 182-396 740-903 (1189)
287 PF08631 SPO22: Meiosis protei 97.0 0.29 6.4E-06 45.8 24.9 129 186-332 3-150 (278)
288 KOG3783 Uncharacterized conser 97.0 0.056 1.2E-06 53.2 16.5 73 477-549 451-524 (546)
289 PF13174 TPR_6: Tetratricopept 96.9 0.0015 3.3E-08 38.3 3.5 33 177-209 1-33 (33)
290 PRK11619 lytic murein transgly 96.8 0.97 2.1E-05 47.7 31.7 124 411-544 247-374 (644)
291 KOG2041 WD40 repeat protein [G 96.7 0.93 2E-05 46.3 26.2 196 274-501 739-936 (1189)
292 PF04910 Tcf25: Transcriptiona 96.7 0.072 1.6E-06 51.6 15.0 38 167-204 31-68 (360)
293 PF09986 DUF2225: Uncharacteri 96.6 0.024 5.2E-07 50.4 10.8 95 454-548 90-197 (214)
294 PF13174 TPR_6: Tetratricopept 96.6 0.0053 1.1E-07 35.9 4.4 31 271-301 2-32 (33)
295 PF13176 TPR_7: Tetratricopept 96.5 0.0043 9.4E-08 37.2 3.5 29 518-546 1-29 (36)
296 PF13176 TPR_7: Tetratricopept 96.5 0.0045 9.8E-08 37.2 3.6 21 410-430 4-24 (36)
297 PRK13184 pknD serine/threonine 96.5 1.8 3.9E-05 47.3 29.9 332 179-543 478-867 (932)
298 KOG1464 COP9 signalosome, subu 96.5 0.26 5.6E-06 44.1 15.7 189 283-503 41-259 (440)
299 KOG1538 Uncharacterized conser 96.4 1.2 2.5E-05 45.2 21.3 112 343-467 709-830 (1081)
300 PF04781 DUF627: Protein of un 96.4 0.07 1.5E-06 40.9 10.1 95 182-298 2-107 (111)
301 PF14853 Fis1_TPR_C: Fis1 C-te 96.3 0.023 5.1E-07 37.3 6.3 39 177-215 2-40 (53)
302 KOG3824 Huntingtin interacting 96.3 0.017 3.7E-07 52.3 7.4 75 374-448 119-193 (472)
303 PF09613 HrpB1_HrpK: Bacterial 96.2 0.097 2.1E-06 43.3 11.0 85 406-492 11-95 (160)
304 PF12968 DUF3856: Domain of Un 96.2 0.39 8.4E-06 37.2 13.0 95 417-513 21-138 (144)
305 PF09613 HrpB1_HrpK: Bacterial 96.1 0.12 2.6E-06 42.8 11.2 86 371-458 10-95 (160)
306 KOG1464 COP9 signalosome, subu 96.1 0.26 5.6E-06 44.1 13.8 188 249-436 41-262 (440)
307 PF10602 RPN7: 26S proteasome 96.1 0.12 2.5E-06 44.6 11.6 105 439-546 36-143 (177)
308 PF14561 TPR_20: Tetratricopep 96.0 0.096 2.1E-06 39.2 9.2 42 394-435 11-52 (90)
309 PRK13184 pknD serine/threonine 96.0 3.2 7E-05 45.5 32.3 107 96-212 481-588 (932)
310 KOG3824 Huntingtin interacting 96.0 0.029 6.2E-07 50.9 7.4 111 341-451 120-235 (472)
311 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.021 4.5E-07 37.5 4.9 36 271-306 3-38 (53)
312 PRK10941 hypothetical protein; 95.9 0.094 2E-06 48.3 10.9 70 342-411 186-255 (269)
313 PF07079 DUF1347: Protein of u 95.9 1.9 4E-05 42.0 33.0 120 376-500 384-520 (549)
314 PF14561 TPR_20: Tetratricopep 95.9 0.13 2.8E-06 38.4 9.7 73 424-498 7-81 (90)
315 PRK10941 hypothetical protein; 95.9 0.092 2E-06 48.3 10.6 66 376-441 186-251 (269)
316 PRK15180 Vi polysaccharide bio 95.9 0.048 1E-06 52.6 8.7 120 382-503 300-419 (831)
317 smart00028 TPR Tetratricopepti 95.8 0.016 3.6E-07 33.2 3.8 32 177-208 2-33 (34)
318 smart00028 TPR Tetratricopepti 95.6 0.024 5.2E-07 32.5 4.1 26 409-434 5-30 (34)
319 COG4976 Predicted methyltransf 95.6 0.019 4.2E-07 49.7 4.6 64 483-553 3-66 (287)
320 COG4649 Uncharacterized protei 95.5 1.3 2.8E-05 37.1 15.2 147 178-381 60-210 (221)
321 PF04781 DUF627: Protein of un 95.4 0.4 8.7E-06 36.9 10.7 105 412-548 3-110 (111)
322 PF10602 RPN7: 26S proteasome 95.3 0.5 1.1E-05 40.7 12.3 122 156-299 14-143 (177)
323 COG3914 Spy Predicted O-linked 95.2 0.83 1.8E-05 45.8 15.0 98 345-442 75-179 (620)
324 KOG1538 Uncharacterized conser 95.2 2 4.3E-05 43.7 17.3 178 342-542 637-830 (1081)
325 KOG2396 HAT (Half-A-TPR) repea 95.1 3.9 8.5E-05 40.4 34.9 96 446-550 467-564 (568)
326 COG5191 Uncharacterized conser 95.0 0.054 1.2E-06 49.3 5.7 87 325-411 95-182 (435)
327 COG3914 Spy Predicted O-linked 95.0 1.5 3.2E-05 44.1 15.9 139 350-490 44-191 (620)
328 TIGR02561 HrpB1_HrpK type III 95.0 0.42 9.1E-06 38.9 10.2 69 383-451 22-90 (153)
329 TIGR02561 HrpB1_HrpK type III 95.0 0.35 7.5E-06 39.4 9.7 82 409-492 14-95 (153)
330 COG5191 Uncharacterized conser 94.9 0.075 1.6E-06 48.4 6.3 88 291-378 95-183 (435)
331 KOG1839 Uncharacterized protei 94.8 0.38 8.2E-06 52.8 12.5 170 374-545 935-1128(1236)
332 COG4976 Predicted methyltransf 94.8 0.047 1E-06 47.5 4.7 60 346-405 4-63 (287)
333 PF13374 TPR_10: Tetratricopep 94.8 0.086 1.9E-06 32.6 5.0 31 476-506 3-33 (42)
334 KOG2422 Uncharacterized conser 94.7 2.1 4.5E-05 43.0 15.9 166 282-472 251-450 (665)
335 PF04190 DUF410: Protein of un 94.6 3.7 7.9E-05 38.0 17.2 80 335-434 88-170 (260)
336 PF09986 DUF2225: Uncharacteri 94.6 0.31 6.7E-06 43.4 9.6 61 441-503 120-193 (214)
337 KOG4814 Uncharacterized conser 94.3 0.41 8.8E-06 48.3 10.3 92 376-469 359-456 (872)
338 KOG1310 WD40 repeat protein [G 94.2 0.15 3.3E-06 50.0 7.1 97 343-439 380-479 (758)
339 PF10579 Rapsyn_N: Rapsyn N-te 94.1 0.61 1.3E-05 33.3 8.1 63 179-263 9-71 (80)
340 KOG0529 Protein geranylgeranyl 93.9 6.3 0.00014 38.1 16.8 98 353-450 91-194 (421)
341 PF04097 Nic96: Nup93/Nic96; 93.9 10 0.00022 40.1 20.5 36 97-132 118-157 (613)
342 KOG3364 Membrane protein invol 93.8 1.6 3.6E-05 34.8 10.8 76 268-376 31-110 (149)
343 KOG2396 HAT (Half-A-TPR) repea 93.8 7.8 0.00017 38.4 31.5 92 195-311 90-182 (568)
344 KOG4814 Uncharacterized conser 93.8 0.93 2E-05 45.8 11.6 95 408-504 357-457 (872)
345 PF12862 Apc5: Anaphase-promot 93.7 0.64 1.4E-05 35.2 8.5 52 454-505 11-71 (94)
346 KOG1310 WD40 repeat protein [G 93.7 0.29 6.2E-06 48.1 7.8 96 378-475 381-479 (758)
347 KOG0529 Protein geranylgeranyl 93.7 3.1 6.7E-05 40.1 14.4 167 354-521 46-234 (421)
348 PF13374 TPR_10: Tetratricopep 93.6 0.13 2.7E-06 31.8 3.9 30 516-545 2-31 (42)
349 KOG1839 Uncharacterized protei 93.5 1.2 2.5E-05 49.2 12.7 165 341-507 936-1131(1236)
350 KOG2114 Vacuolar assembly/sort 93.4 7.7 0.00017 41.0 17.6 56 311-366 342-397 (933)
351 COG4649 Uncharacterized protei 93.3 4.3 9.3E-05 34.1 16.6 142 345-503 47-195 (221)
352 PF12862 Apc5: Anaphase-promot 93.3 0.43 9.3E-06 36.1 7.0 62 485-546 8-71 (94)
353 PF15015 NYD-SP12_N: Spermatog 93.3 1.1 2.5E-05 42.9 10.8 89 343-431 182-288 (569)
354 KOG3364 Membrane protein invol 93.1 1.7 3.8E-05 34.7 9.9 32 517-548 72-103 (149)
355 PRK11619 lytic murein transgly 93.0 14 0.00031 39.2 39.8 55 479-542 411-465 (644)
356 PF11207 DUF2989: Protein of u 93.0 3.4 7.3E-05 35.9 12.4 53 371-424 141-197 (203)
357 KOG4014 Uncharacterized conser 92.9 5.2 0.00011 33.9 16.8 163 336-505 33-234 (248)
358 PF04053 Coatomer_WDAD: Coatom 92.8 6.8 0.00015 39.3 16.3 130 340-500 298-427 (443)
359 KOG3807 Predicted membrane pro 92.6 8.8 0.00019 35.8 18.5 113 345-472 192-306 (556)
360 KOG0128 RNA-binding protein SA 92.3 17 0.00037 38.5 29.2 97 441-543 463-561 (881)
361 COG5159 RPN6 26S proteasome re 92.3 5.4 0.00012 36.4 13.0 201 341-545 7-235 (421)
362 KOG2422 Uncharacterized conser 92.1 12 0.00026 37.9 16.3 153 350-504 251-448 (665)
363 COG2912 Uncharacterized conser 92.0 1.1 2.3E-05 40.8 8.6 65 345-409 189-253 (269)
364 PF07721 TPR_4: Tetratricopept 91.8 0.26 5.6E-06 26.8 2.9 25 176-200 1-25 (26)
365 PF00244 14-3-3: 14-3-3 protei 91.8 7.7 0.00017 35.2 14.1 62 239-300 5-68 (236)
366 PF07721 TPR_4: Tetratricopept 91.6 0.26 5.5E-06 26.9 2.8 25 517-541 2-26 (26)
367 PF11817 Foie-gras_1: Foie gra 91.6 9.6 0.00021 35.0 14.8 59 440-500 179-243 (247)
368 KOG0128 RNA-binding protein SA 91.6 21 0.00045 37.9 30.6 63 476-545 462-526 (881)
369 PF15015 NYD-SP12_N: Spermatog 91.5 1.2 2.5E-05 42.8 8.6 89 310-398 183-289 (569)
370 PF07720 TPR_3: Tetratricopept 91.5 0.57 1.2E-05 27.9 4.3 33 177-209 2-36 (36)
371 PF04053 Coatomer_WDAD: Coatom 91.4 17 0.00038 36.5 18.8 130 347-503 271-401 (443)
372 PF00244 14-3-3: 14-3-3 protei 91.3 11 0.00024 34.2 15.3 55 491-545 142-198 (236)
373 KOG3807 Predicted membrane pro 91.0 14 0.00029 34.7 17.2 196 273-481 188-402 (556)
374 PF04190 DUF410: Protein of un 90.9 13 0.00029 34.3 18.6 138 369-531 88-243 (260)
375 PF07720 TPR_3: Tetratricopept 90.8 0.78 1.7E-05 27.3 4.5 20 408-427 4-23 (36)
376 COG2912 Uncharacterized conser 90.8 2 4.3E-05 39.1 9.1 72 376-447 186-257 (269)
377 COG3629 DnrI DNA-binding trans 90.6 2.2 4.9E-05 39.3 9.4 62 405-468 153-214 (280)
378 KOG4014 Uncharacterized conser 90.5 10 0.00022 32.3 15.3 55 414-470 177-233 (248)
379 PF11207 DUF2989: Protein of u 90.3 12 0.00025 32.7 14.8 161 96-289 28-198 (203)
380 PF10579 Rapsyn_N: Rapsyn N-te 90.2 2 4.3E-05 30.7 6.7 29 274-302 11-39 (80)
381 TIGR03504 FimV_Cterm FimV C-te 90.2 0.64 1.4E-05 29.2 3.9 28 93-120 2-29 (44)
382 PF10516 SHNi-TPR: SHNi-TPR; 89.8 0.61 1.3E-05 28.2 3.4 29 177-205 2-30 (38)
383 COG3629 DnrI DNA-binding trans 89.5 1.9 4.2E-05 39.7 8.1 63 371-433 153-215 (280)
384 PF10516 SHNi-TPR: SHNi-TPR; 89.5 0.66 1.4E-05 28.0 3.4 28 373-400 3-30 (38)
385 KOG2063 Vacuolar assembly/sort 89.3 26 0.00056 38.2 17.1 165 339-503 506-712 (877)
386 PF10373 EST1_DNA_bind: Est1 D 89.2 1.7 3.7E-05 40.7 8.0 62 356-417 1-62 (278)
387 COG4941 Predicted RNA polymera 88.2 23 0.0005 33.4 14.3 128 351-481 270-405 (415)
388 PF10255 Paf67: RNA polymerase 87.9 29 0.00063 34.2 18.2 58 341-399 126-192 (404)
389 PF10373 EST1_DNA_bind: Est1 D 87.8 2 4.3E-05 40.3 7.5 62 390-451 1-62 (278)
390 COG3947 Response regulator con 87.7 4.4 9.6E-05 37.1 8.8 69 442-512 282-350 (361)
391 COG3947 Response regulator con 87.7 6.6 0.00014 36.0 9.9 59 374-432 282-340 (361)
392 KOG2114 Vacuolar assembly/sort 87.5 44 0.00095 35.8 27.0 145 176-362 368-515 (933)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 87.4 11 0.00024 30.2 10.4 45 252-296 80-126 (126)
394 smart00386 HAT HAT (Half-A-TPR 87.0 1.6 3.4E-05 24.8 4.1 29 190-218 1-29 (33)
395 COG4941 Predicted RNA polymera 86.3 30 0.00065 32.7 16.8 34 249-282 210-243 (415)
396 PF11817 Foie-gras_1: Foie gra 86.1 27 0.00059 32.0 14.9 78 388-467 155-244 (247)
397 TIGR03504 FimV_Cterm FimV C-te 85.3 1.5 3.2E-05 27.6 3.3 27 519-545 2-28 (44)
398 COG5159 RPN6 26S proteasome re 85.3 30 0.00066 31.8 25.8 279 180-503 7-313 (421)
399 COG1747 Uncharacterized N-term 85.2 44 0.00095 33.6 24.6 78 319-399 82-159 (711)
400 PF12854 PPR_1: PPR repeat 84.8 2.3 5E-05 24.9 3.9 30 173-202 4-33 (34)
401 PF13041 PPR_2: PPR repeat fam 84.2 2.1 4.6E-05 27.6 4.0 40 515-554 2-41 (50)
402 PF09670 Cas_Cas02710: CRISPR- 84.1 20 0.00044 35.3 12.4 61 374-434 134-198 (379)
403 smart00386 HAT HAT (Half-A-TPR 83.8 3 6.5E-05 23.5 4.3 26 421-446 3-28 (33)
404 cd02682 MIT_AAA_Arch MIT: doma 83.7 8.3 0.00018 27.5 6.9 44 477-520 8-51 (75)
405 KOG1463 26S proteasome regulat 83.4 41 0.0009 31.8 21.7 172 273-472 132-318 (411)
406 PF12739 TRAPPC-Trs85: ER-Golg 82.9 51 0.0011 33.0 15.0 31 336-366 206-237 (414)
407 KOG0687 26S proteasome regulat 82.2 34 0.00073 32.2 11.9 124 155-300 81-212 (393)
408 PF13041 PPR_2: PPR repeat fam 82.1 7 0.00015 25.1 5.9 29 475-503 3-31 (50)
409 COG4455 ImpE Protein of avirul 81.8 21 0.00045 31.5 9.8 72 242-313 8-79 (273)
410 KOG1920 IkappaB kinase complex 80.4 1.1E+02 0.0023 34.5 23.2 108 373-500 941-1051(1265)
411 COG4455 ImpE Protein of avirul 79.9 13 0.00027 32.8 8.0 59 380-438 10-68 (273)
412 PF12854 PPR_1: PPR repeat 79.7 5.3 0.00011 23.3 4.1 24 440-465 8-31 (34)
413 KOG0546 HSP90 co-chaperone CPR 79.5 3.7 7.9E-05 38.7 5.0 125 343-484 228-352 (372)
414 KOG2063 Vacuolar assembly/sort 79.1 1.1E+02 0.0023 33.7 16.8 87 347-433 601-712 (877)
415 COG1747 Uncharacterized N-term 78.4 79 0.0017 31.9 25.1 98 266-366 63-160 (711)
416 KOG0546 HSP90 co-chaperone CPR 78.2 4.8 0.0001 38.0 5.4 78 373-450 277-354 (372)
417 PF10255 Paf67: RNA polymerase 78.1 18 0.00038 35.6 9.5 56 241-297 128-192 (404)
418 KOG2581 26S proteasome regulat 76.2 80 0.0017 30.8 23.0 133 242-404 133-280 (493)
419 COG5536 BET4 Protein prenyltra 75.9 50 0.0011 30.4 10.8 167 355-524 50-235 (328)
420 PF12739 TRAPPC-Trs85: ER-Golg 75.7 91 0.002 31.2 15.6 27 479-505 374-400 (414)
421 KOG2581 26S proteasome regulat 74.4 90 0.0019 30.5 19.4 125 348-474 137-280 (493)
422 KOG0276 Vesicle coat complex C 73.6 57 0.0012 33.5 11.6 102 243-362 645-746 (794)
423 PF09670 Cas_Cas02710: CRISPR- 73.4 69 0.0015 31.6 12.4 61 340-400 134-198 (379)
424 PF01535 PPR: PPR repeat; Int 71.2 7.2 0.00016 21.6 3.2 25 340-364 3-27 (31)
425 PF01535 PPR: PPR repeat; Int 70.9 7 0.00015 21.6 3.1 28 518-545 2-29 (31)
426 KOG0889 Histone acetyltransfer 70.1 3.2E+02 0.007 35.1 23.2 83 405-488 2812-2900(3550)
427 KOG1463 26S proteasome regulat 69.3 1.1E+02 0.0023 29.2 27.6 278 180-503 8-315 (411)
428 COG5187 RPN7 26S proteasome re 68.9 99 0.0022 28.7 13.3 107 175-300 114-223 (412)
429 KOG1497 COP9 signalosome, subu 68.6 51 0.0011 31.0 9.3 57 408-467 106-170 (399)
430 cd02680 MIT_calpain7_2 MIT: do 68.6 9.2 0.0002 27.3 3.8 17 383-399 18-34 (75)
431 PF12753 Nro1: Nuclear pore co 67.9 60 0.0013 31.6 10.0 82 103-188 73-160 (404)
432 smart00299 CLH Clathrin heavy 67.8 65 0.0014 26.2 14.9 121 346-486 16-136 (140)
433 KOG0686 COP9 signalosome, subu 67.3 41 0.00089 32.7 8.7 62 338-399 151-215 (466)
434 PF10952 DUF2753: Protein of u 66.7 29 0.00062 27.4 6.3 25 408-432 53-77 (140)
435 smart00101 14_3_3 14-3-3 homol 66.7 1E+02 0.0022 28.1 15.4 57 239-295 5-65 (244)
436 KOG4279 Serine/threonine prote 65.3 2E+02 0.0043 30.8 16.5 102 268-370 200-320 (1226)
437 PHA02537 M terminase endonucle 64.4 74 0.0016 28.7 9.5 36 516-551 169-213 (230)
438 TIGR00756 PPR pentatricopeptid 63.3 18 0.00038 20.4 4.0 29 518-546 2-30 (35)
439 PF14863 Alkyl_sulf_dimr: Alky 63.2 27 0.00059 28.7 6.1 43 242-284 77-119 (141)
440 KOG0687 26S proteasome regulat 63.1 1.4E+02 0.003 28.3 12.6 100 336-435 103-211 (393)
441 TIGR00756 PPR pentatricopeptid 62.8 17 0.00036 20.6 3.8 22 410-431 5-26 (35)
442 KOG0276 Vesicle coat complex C 62.8 53 0.0011 33.8 8.9 47 416-469 648-694 (794)
443 KOG4279 Serine/threonine prote 62.5 90 0.0019 33.1 10.6 59 248-306 256-324 (1226)
444 COG5187 RPN7 26S proteasome re 62.0 1.4E+02 0.003 27.9 13.2 101 439-545 115-221 (412)
445 cd02679 MIT_spastin MIT: domai 62.0 15 0.00033 26.5 3.9 17 383-399 20-36 (79)
446 PF09205 DUF1955: Domain of un 61.5 87 0.0019 25.4 11.7 56 484-546 95-150 (161)
447 KOG4521 Nuclear pore complex, 61.4 2.9E+02 0.0062 31.4 14.8 143 90-286 920-1071(1480)
448 cd02682 MIT_AAA_Arch MIT: doma 61.3 39 0.00085 24.1 5.8 20 251-270 29-48 (75)
449 PRK12798 chemotaxis protein; R 60.8 1.8E+02 0.0039 28.8 19.9 106 175-304 111-220 (421)
450 PF04840 Vps16_C: Vps16, C-ter 60.6 1.6E+02 0.0035 28.2 20.9 98 381-497 187-284 (319)
451 PF09797 NatB_MDM20: N-acetylt 60.4 1.8E+02 0.0038 28.6 20.8 46 386-431 198-243 (365)
452 PF14863 Alkyl_sulf_dimr: Alky 59.4 33 0.00071 28.2 5.9 47 373-419 72-118 (141)
453 KOG0686 COP9 signalosome, subu 58.5 1.9E+02 0.0041 28.4 12.1 100 440-543 151-256 (466)
454 cd02679 MIT_spastin MIT: domai 58.2 43 0.00093 24.3 5.6 22 487-508 20-41 (79)
455 PF09205 DUF1955: Domain of un 58.2 1E+02 0.0022 25.1 13.0 56 311-366 94-149 (161)
456 PF07163 Pex26: Pex26 protein; 57.6 1.4E+02 0.0031 27.7 9.9 23 378-400 42-64 (309)
457 PRK12798 chemotaxis protein; R 57.6 2E+02 0.0044 28.4 22.3 193 343-541 118-320 (421)
458 TIGR02710 CRISPR-associated pr 56.5 2.1E+02 0.0045 28.2 12.2 54 377-430 136-196 (380)
459 TIGR02710 CRISPR-associated pr 56.3 2.1E+02 0.0045 28.2 12.0 54 241-294 136-196 (380)
460 cd02680 MIT_calpain7_2 MIT: do 56.3 21 0.00044 25.6 3.7 16 454-469 19-34 (75)
461 smart00299 CLH Clathrin heavy 55.6 1.1E+02 0.0024 24.8 15.5 49 244-293 16-64 (140)
462 PF13812 PPR_3: Pentatricopept 55.5 35 0.00075 19.2 4.2 27 477-503 3-29 (34)
463 PHA02537 M terminase endonucle 52.8 16 0.00034 32.8 3.3 23 345-367 91-113 (230)
464 COG3014 Uncharacterized protei 52.5 2.2E+02 0.0047 27.3 12.6 35 514-548 211-245 (449)
465 PF11846 DUF3366: Domain of un 52.0 53 0.0012 28.7 6.6 32 405-436 144-175 (193)
466 KOG2561 Adaptor protein NUB1, 51.3 76 0.0016 31.3 7.6 108 177-298 164-296 (568)
467 smart00671 SEL1 Sel1-like repe 51.0 31 0.00068 19.8 3.6 30 517-546 2-35 (36)
468 PF12753 Nro1: Nuclear pore co 50.7 19 0.00041 34.9 3.7 56 491-555 334-401 (404)
469 PF05053 Menin: Menin; InterP 50.6 1.4E+02 0.003 30.7 9.6 26 478-503 321-346 (618)
470 KOG2758 Translation initiation 50.5 2.3E+02 0.005 26.9 20.6 179 324-505 116-318 (432)
471 cd00280 TRFH Telomeric Repeat 49.0 1.8E+02 0.0038 25.2 9.0 40 242-282 118-157 (200)
472 smart00101 14_3_3 14-3-3 homol 48.7 2.1E+02 0.0047 26.1 18.1 54 491-544 144-199 (244)
473 KOG2561 Adaptor protein NUB1, 48.6 1.7E+02 0.0037 29.0 9.4 27 178-204 269-295 (568)
474 PF04212 MIT: MIT (microtubule 48.1 38 0.00081 23.6 4.1 28 177-204 6-33 (69)
475 PF04212 MIT: MIT (microtubule 47.2 95 0.0021 21.6 7.1 30 479-508 9-38 (69)
476 PF08238 Sel1: Sel1 repeat; I 47.0 41 0.0009 19.7 3.7 31 516-546 1-38 (39)
477 PF11846 DUF3366: Domain of un 46.6 81 0.0018 27.5 6.9 49 251-300 127-175 (193)
478 smart00777 Mad3_BUB1_I Mad3/BU 45.7 1.3E+02 0.0029 24.0 7.2 74 106-201 49-124 (125)
479 PF10952 DUF2753: Protein of u 45.5 1.6E+02 0.0034 23.5 8.4 65 478-542 4-76 (140)
480 PF10938 YfdX: YfdX protein; 45.4 72 0.0016 26.8 6.0 119 179-297 5-145 (155)
481 KOG4151 Myosin assembly protei 44.9 80 0.0017 33.6 7.3 98 343-440 59-162 (748)
482 cd02681 MIT_calpain7_1 MIT: do 44.6 37 0.0008 24.4 3.5 30 175-204 5-34 (76)
483 cd02684 MIT_2 MIT: domain cont 44.0 41 0.00088 24.1 3.7 33 353-400 3-35 (75)
484 PF13226 DUF4034: Domain of un 43.6 2.8E+02 0.006 25.9 11.9 22 242-263 7-28 (277)
485 PF13226 DUF4034: Domain of un 43.2 2.8E+02 0.0061 25.9 10.9 74 344-417 7-89 (277)
486 PRK15490 Vi polysaccharide bio 42.2 2.1E+02 0.0046 29.9 9.7 81 416-500 19-99 (578)
487 KOG0889 Histone acetyltransfer 41.4 9.5E+02 0.021 31.5 20.3 65 475-546 2812-2884(3550)
488 KOG4151 Myosin assembly protei 41.3 80 0.0017 33.6 6.7 118 354-481 44-167 (748)
489 cd02683 MIT_1 MIT: domain cont 41.3 1.3E+02 0.0029 21.6 8.0 32 482-513 13-44 (77)
490 PRK15490 Vi polysaccharide bio 40.0 2.3E+02 0.005 29.6 9.6 82 381-466 18-99 (578)
491 KOG2280 Vacuolar assembly/sort 39.8 5.1E+02 0.011 27.9 25.5 102 379-498 692-793 (829)
492 smart00777 Mad3_BUB1_I Mad3/BU 38.8 1.9E+02 0.004 23.3 7.1 43 494-541 82-124 (125)
493 PF02184 HAT: HAT (Half-A-TPR) 38.0 74 0.0016 18.4 3.4 13 389-401 5-17 (32)
494 PF04348 LppC: LppC putative l 38.0 11 0.00023 39.1 0.0 54 241-294 30-86 (536)
495 KOG2280 Vacuolar assembly/sort 37.5 5.6E+02 0.012 27.6 17.3 103 346-466 693-795 (829)
496 PF12921 ATP13: Mitochondrial 37.4 2.2E+02 0.0047 22.9 8.1 30 338-367 3-32 (126)
497 PF08626 TRAPPC9-Trs120: Trans 36.1 3.7E+02 0.008 31.4 11.7 90 455-545 359-474 (1185)
498 PF04090 RNA_pol_I_TF: RNA pol 35.4 3.1E+02 0.0068 24.1 10.4 115 370-486 40-189 (199)
499 KOG3677 RNA polymerase I-assoc 35.1 4.6E+02 0.01 26.0 10.5 56 374-433 238-300 (525)
500 PF07219 HemY_N: HemY protein 34.7 2.2E+02 0.0047 22.1 7.2 44 445-490 65-108 (108)
No 1
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-70 Score=496.21 Aligned_cols=517 Identities=53% Similarity=0.854 Sum_probs=482.2
Q ss_pred ChHHHHHHHHHHHH-HHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCC
Q 008705 3 SKESCRNELRSAIR-QLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTP 81 (557)
Q Consensus 3 ~~~~~~~~l~~~~~-~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (557)
.++.+|.+|...+. ++.+|||.++.||+|+.++++|....+ +....++
T Consensus 21 ~l~~~r~ql~~~~~~~~~~rgl~~~~~w~a~~~~~~p~~~~~-------------------------------e~~~~~~ 69 (559)
T KOG1155|consen 21 ALEWIRQQLLGICFAETRERGLAHAPKWSAENLLSLPLRMIG-------------------------------EFQTRPP 69 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCcccC-------------------------------cccCCCC
Confidence 35677888888888 699999999999999999999543211 0001123
Q ss_pred CccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHH
Q 008705 82 VMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISL 161 (557)
Q Consensus 82 ~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (557)
.+++|...+.+.|++|++||++++|+||..+|+++.+....|+++|+.|++|+++..++..++.+...+....+..+..+
T Consensus 70 ~p~ed~~~~~~~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L 149 (559)
T KOG1155|consen 70 IPEEDQVLEKDIYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIEL 149 (559)
T ss_pred CCCcchhhhcchhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHH
Confidence 45566567789999999999999999999999999999999999999999999999999999988888888899999999
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcC--CC--hhHHH
Q 008705 162 ERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLN--LN--NHWMK 237 (557)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~--~~--~~~~~ 237 (557)
.+.++...-....|++.+|+.|.++.+.|+...|+..|..++...|.+|+||..|..++...+.+..+. .+ .+||.
T Consensus 150 ~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~ 229 (559)
T KOG1155|consen 150 NKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMK 229 (559)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHH
Confidence 999999888889999999999999999999999999999999999999999999999999998877653 44 89999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK 316 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 316 (557)
.+|++.++....+.++++.-++..... +|.+..+..+.|.+.+...++++|+..|+.+.+.+|.+.+.++.++++++.+
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 999999999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
++..++..+++.+..+++.+|+++|.+|++|...+++++|+.+|++|+++||....+|+.+|+.|+++++...|++.|++
T Consensus 310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
|++++|.|.++|++||++|..++++..|+.+|++|+...|+|+++|..+|.||.+ .++.++|++||.+++.....+..
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k--l~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK--LNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--hccHHHHHHHHHHHHhccccchH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTH 553 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a 553 (557)
++..||.+|.++++..+|..+|++.++.....+...|+...+..+||..+.+.+++++|..+..+++..+ +..+++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~-~e~eea 543 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE-TECEEA 543 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC-chHHHH
Confidence 9999999999999999999999999997777777788899999999999999999999999999999984 544443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2e-46 Score=352.70 Aligned_cols=435 Identities=18% Similarity=0.178 Sum_probs=381.9
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcC----CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTG----RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS 166 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (557)
.++..||.-.|..|+|.+|.+.-.-+-. .....+-.-+.+..+. +.+..... -.
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~--r~d~s~a~--------------------~~ 106 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS--RLDKSSAG--------------------SL 106 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc--chhhhhhh--------------------hh
Confidence 6688999999999999999987654422 1122222222233221 22222110 00
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh--------cC-CChhHHH
Q 008705 167 TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS--------LN-LNNHWMK 237 (557)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~--------l~-~~~~~~~ 237 (557)
...+.+|.-++++-.+|.++...|++++|+..|+.++++.|++.++|..++.++...+.... +. .|..+..
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 12234677788888888888888888888888888888888888888888887766554433 22 3444555
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE 317 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 317 (557)
.-.+|.++...|+..+|..+|.++++..|....+|..+|.++..+|+...|+..|+++++++|+..+++..+++++...+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705 318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397 (557)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 397 (557)
.++.+...+.+++...|..+.++.++|.+|+.+|..+-|+..|++++++.|+++.++.++|..+...|+..+|..+|.++
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH
Q 008705 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 477 (557)
Q Consensus 398 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 477 (557)
+.+.|+.+++.++||.+|..+|++++|..+|.++++..|..+.+..++|.+|.. +|++++|+.+|+.++.+.|...++
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq--qgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ--QGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh--cccHHHHHHHHHHHHhcCchHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhcC
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLKNL 557 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~~L 557 (557)
+.++|..|..+|+...|+.+|.+++. .+|..++++.+||.+|...|+..+|+..|+.++++. |+..+++.||
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~-------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNl 496 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ-------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNL 496 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh-------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHH
Confidence 99999999999999999999999999 899999999999999999999999999999999998 5566666653
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-44 Score=338.30 Aligned_cols=390 Identities=18% Similarity=0.157 Sum_probs=338.1
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh--------c
Q 008705 158 LISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS--------L 229 (557)
Q Consensus 158 l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~--------l 229 (557)
+.++++........+|.+...+.+++.++++..+++.....-..+++..|...+++..+++.+...+.+.. +
T Consensus 64 ~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~ai 143 (966)
T KOG4626|consen 64 YKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAI 143 (966)
T ss_pred HHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 44444555555567788888999999999999999999999999999999999999999888777666543 2
Q ss_pred -CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH
Q 008705 230 -NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM 308 (557)
Q Consensus 230 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 308 (557)
..|+....+..+|.++...|+.+.|.++|..+++++|....+...+|..+...|+..+|..+|.++++..|...-+|..
T Consensus 144 el~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsn 223 (966)
T KOG4626|consen 144 ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSN 223 (966)
T ss_pred hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehh
Confidence 2455566667788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch
Q 008705 309 YSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP 388 (557)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 388 (557)
++.++...|+...++..+.+++.++|.-+++++++|++|...+.+++|+.+|.+|+.+.|++..++-++|.+|.++|..+
T Consensus 224 Lg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 224 LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred cchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHH
Confidence 88888888888888888888899999988999999999999999999999999999888998888888999999999999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468 (557)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al 468 (557)
-||..|++++++.|+.+.++.++|.++-..|+..+|..+|.+++.+.|+.+++.+++|.++.. +|.+++|..+|++++
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E--~~~~e~A~~ly~~al 381 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE--QGKIEEATRLYLKAL 381 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hccchHHHHHHHHHH
Confidence 999999999999998899999999999888999999999999999999999999999999988 899999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
...|....+..+||.+|.++|++++|+.+|++++. ..|..++++.++|..|..+|+.+.|+..|.+++.++ |
T Consensus 382 ~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-P 453 (966)
T KOG4626|consen 382 EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-P 453 (966)
T ss_pred hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-c
Confidence 99998888999999999999999999999999988 788889999999999999999999999999999987 4
Q ss_pred chhhhhhcC
Q 008705 549 VSFTHLKNL 557 (557)
Q Consensus 549 ~~~~a~~~L 557 (557)
...++++||
T Consensus 454 t~AeAhsNL 462 (966)
T KOG4626|consen 454 TFAEAHSNL 462 (966)
T ss_pred HHHHHHhhH
Confidence 555666664
No 4
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=278.15 Aligned_cols=483 Identities=22% Similarity=0.237 Sum_probs=374.8
Q ss_pred HHHHHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCCCccccc
Q 008705 8 RNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDE 87 (557)
Q Consensus 8 ~~~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (557)
....|+.+|++.+...|++|+++||.+.++..+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d----------------------------------------------- 48 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTND----------------------------------------------- 48 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC-----------------------------------------------
Confidence 456777888999999999999999999999732
Q ss_pred cchhhHHHHHHHhhhhhhHHHHHHHHhhhcCC--chhhHHHHHHHHhhcccchHHHHHhhCCCC-CchhhchhHHHHHHH
Q 008705 88 VEDSDFYLLAKSYFDCREYRRAAHVLRDQTGR--RSVFLRCYALYLAGEKRKEEEMIELEGPLG-KSNAVNRELISLERE 164 (557)
Q Consensus 88 ~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 164 (557)
+.+.|++|++++-.|+|.||.+.+....-. .-....++ .++.-..+...++..+.+... ...........+...
T Consensus 49 --p~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~-~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 49 --PADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLA-AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred --hHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 278999999999999999999999876431 12222222 222223334555554433110 001111111111111
Q ss_pred Hhh--hhc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHh--hhcHHH---HhhcCCChhH
Q 008705 165 LST--SWK--NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSL--CTSIDI---LNSLNLNNHW 235 (557)
Q Consensus 165 l~~--~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~--~~~~~~---~~~l~~~~~~ 235 (557)
+.. ... ........++++|.+|....++++|...|.+++..++.+.++...+... ....+. +.++......
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 110 000 0122355899999999999999999999999999999999998877552 222122 2221111000
Q ss_pred HHHHHHHHHHHHHh----hhHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 008705 236 MKDYFLASAYQELR----MHKESLTKYE-YLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYS 310 (557)
Q Consensus 236 ~~~~~la~~~~~~~----~~~~A~~~~~-~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (557)
....-.-..+++.. ..+++...-. .-+..-.+++++....+..++..++|.+..++++.+++.+|.+.+.+....
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 00000001111100 0001110000 111112347788999999999999999999999999999999999998888
Q ss_pred HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHH
Q 008705 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA 390 (557)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 390 (557)
.+++..++..++..+.++++...|..+-+|+.+|.+|...|++.+|.++|.++..++|.+..+|...|+.|.-.|.-++|
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705 391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470 (557)
Q Consensus 391 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~ 470 (557)
+.+|..|-++.|........+|.-|...+++.-|..+|.+|+.+.|.+|-++..+|.+.+. .+.|.+|..+|++++..
T Consensus 366 maaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~--~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 366 MAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT--YEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh--HhhhHHHHHHHHHHHHH
Confidence 9999999999999988899999999999999999999999999999999999999999999 99999999999999843
Q ss_pred C----C---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 471 N----D---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 471 ~----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
- + .....+.+||.++.+++++++|+.+|++++. ..|.++.++..+|.+|..+|+++.|+++|.+++
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~-------l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL-------LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 2 1 2344789999999999999999999999999 789999999999999999999999999999999
Q ss_pred ccCCCc
Q 008705 544 DYTGPV 549 (557)
Q Consensus 544 ~~~~~~ 549 (557)
.+.|.+
T Consensus 517 ~l~p~n 522 (611)
T KOG1173|consen 517 ALKPDN 522 (611)
T ss_pred hcCCcc
Confidence 999877
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.3e-37 Score=292.49 Aligned_cols=302 Identities=28% Similarity=0.456 Sum_probs=291.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
.|......-+..+|+..|++.....++..+++.++|+.|+.+++|++|..+|+.+-+..|...+.+..++.+++..++.-
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 34445556667899999999878888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705 321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI 400 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 400 (557)
++..+++.++..+|+.|++||.+|++|..+++++.|+++|++|++++|++..+|+.+|+.+.....++.|..+|+.|+..
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480 (557)
Q Consensus 401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 480 (557)
+|++..+|+++|.+|.++++++.|.-+|++|++++|.+..+...+|.++.+ .|+.++|+..|++|+.++|.++-..+.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~--~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ--LKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH--hhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
.|.++...+++++|+..+++..+ ..|+...+++.+|++|.+.|+.+.|+..|.-|.+++|+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~-------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE-------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999888 78999999999999999999999999999999999987654
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.8e-35 Score=321.95 Aligned_cols=443 Identities=14% Similarity=0.093 Sum_probs=327.2
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcCC---chhhHHHHHHHHhhcccchHHHHHhhCC---CC-C----------ch
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGR---RSVFLRCYALYLAGEKRKEEEMIELEGP---LG-K----------SN 152 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~---~~-~----------~~ 152 (557)
....+.++.++...|++++|..+++..... .+......+.. ....+..+++...... +. . ..
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 509 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI-YLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH-HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 345566677777778888887777766542 12222222221 1223334433332100 00 0 00
Q ss_pred hhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHh-----
Q 008705 153 AVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILN----- 227 (557)
Q Consensus 153 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~----- 227 (557)
...+.+..+...+++.....|.+..++..+|.++...|++++|+..|++++..+|.+...+..++.++...+...
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 112345556666666666677778888888888888888888888888888888887777777766544332221
Q ss_pred --hc--CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705 228 --SL--NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV 303 (557)
Q Consensus 228 --~l--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 303 (557)
.. ..+......+.+|.++...|++++|+..|+++++..|.++..+..+|.++...|++++|+..|+++++.+|.+.
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 11 12344445566788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705 304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE 383 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 383 (557)
..+..++.++...++.+++..++..+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++..
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~ 748 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888887776 667778888888
Q ss_pred cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705 384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~ 463 (557)
.|++++|+..+++++..+|++..+++.+|.++...|++++|+..|+++++..|+++.++..+|.++.. .|+ .+|+..
T Consensus 749 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE--LKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cCc-HHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888 888 778888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
+++++...|+++.++..+|.++...|++++|+.+|+++++ ..|.++.++..++.++.+.|++++|.+.+++++
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN-------IAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888887 577788888888888888888888888888776
Q ss_pred c
Q 008705 544 D 544 (557)
Q Consensus 544 ~ 544 (557)
+
T Consensus 899 ~ 899 (899)
T TIGR02917 899 N 899 (899)
T ss_pred C
Confidence 3
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.7e-35 Score=321.63 Aligned_cols=451 Identities=18% Similarity=0.144 Sum_probs=314.8
Q ss_pred ccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchh---hHHHHHHHHhhcccchHHHHHhhCC---CC-C---------
Q 008705 87 EVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSV---FLRCYALYLAGEKRKEEEMIELEGP---LG-K--------- 150 (557)
Q Consensus 87 ~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~~~~~---~~-~--------- 150 (557)
|......+.+|.+++..|++++|..+|+++....+. .....+.... ..+..+++...... .. .
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL-SQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 334466777899999999999999999887553221 1111111111 22223322221100 00 0
Q ss_pred -chhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHh--
Q 008705 151 -SNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILN-- 227 (557)
Q Consensus 151 -~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~-- 227 (557)
.....+....+...+.......|.++..++.+|.++...|++++|+..|+++++.+|.+..++..++.+....+...
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 00122344555555555555666666677777777777777777777777777777766666666655433221111
Q ss_pred -----hc------------------------------------CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705 228 -----SL------------------------------------NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS 266 (557)
Q Consensus 228 -----~l------------------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 266 (557)
.+ ..+......+.++.++...|++++|+..+++++...|
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 00 1222233334456666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705 267 FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY 346 (557)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 346 (557)
.++.++..+|.++...|++++|+..|+++++..|.+...+..++.++...++++++...+++++..+|.+..++..++.+
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66666666677776677777777777777666666666666666666666777777666666666666666667777777
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
+...|++++|+..++++....|.....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777777777666666677777778888888888888888888888888766 667778888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705 427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (557)
.++++++..|+++.++..+|.++.. .|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.+++++++
T Consensus 758 ~~~~~l~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--- 831 (899)
T TIGR02917 758 TLEAWLKTHPNDAVLRTALAELYLA--QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK--- 831 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh---
Confidence 8888888888888888899999988 8999999999999999889888889999999999988 779999999888
Q ss_pred hhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 507 AEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 507 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
..|+++..+..+|.++...|++++|..+|+++++.+|.+
T Consensus 832 ----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 832 ----LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred ----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 678888999999999999999999999999999998763
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.3e-34 Score=302.63 Aligned_cols=397 Identities=13% Similarity=0.038 Sum_probs=309.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhcCCchh--hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705 93 FYLLAKSYFDCREYRRAAHVLRDQTGRRSV--FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK 170 (557)
Q Consensus 93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~~~--~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (557)
....|..+|..|+|++|+..|++++...+. +....+..+. . .+++..+...+...++
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~-~--------------------l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHN-A--------------------LGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH-H--------------------hCCHHHHHHHHHHHHH
Confidence 446799999999999999999998663332 1111111111 1 1223334444555556
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhh
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRM 250 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~ 250 (557)
.+|+++.+++.+|.++...|++++|+..|..+...++.+......+ ......
T Consensus 189 l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~l~--- 240 (615)
T TIGR00990 189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA-------------------------VERLLK--- 240 (615)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH-------------------------HHHHHH---
Confidence 6777777777777777777777777777776666555443211111 000011
Q ss_pred hHHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHH---HhcccHHHHHHHHHH
Q 008705 251 HKESLTKYEYLQGTFSFS---------------------------------NYIQAQIAKAQ---YSLREFEQVEVIFEE 294 (557)
Q Consensus 251 ~~~A~~~~~~~l~~~p~~---------------------------------~~~~~~la~~~---~~~g~~~~A~~~~~~ 294 (557)
..+...+..++...|.+ ...+..++..+ ...++|++|+..|++
T Consensus 241 -~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~ 319 (615)
T TIGR00990 241 -KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK 319 (615)
T ss_pred -HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 12222233333333322 11222233222 123689999999999
Q ss_pred HHHhC---CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH
Q 008705 295 LLRND---PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL 371 (557)
Q Consensus 295 ~l~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 371 (557)
++... |....++..++.++...++++++...+++++..+|..+..++.+|.++...|++++|+..|+++++.+|+++
T Consensus 320 al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 320 ALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99864 666677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
.+++.+|.++...|++++|+..|++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++..
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCChHHH------HHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 008705 452 EQLHMLEEAIKCYRRAANCNDSEAIA------LNQLAK-LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT 524 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p~~~~~------~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 524 (557)
.|++++|+..|++++.+.|..... +...+. ++...|++++|+.++++++. .+|++..++..+|.
T Consensus 480 --~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-------l~p~~~~a~~~la~ 550 (615)
T TIGR00990 480 --QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-------IDPECDIAVATMAQ 550 (615)
T ss_pred --ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCCCcHHHHHHHHH
Confidence 999999999999999998865332 223333 34457999999999999999 68999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC
Q 008705 525 HCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 525 ~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
++...|++++|+.+|++++++.+.
T Consensus 551 ~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 551 LLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHccCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998754
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.8e-33 Score=310.95 Aligned_cols=427 Identities=13% Similarity=0.039 Sum_probs=323.0
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHH---HHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705 92 DFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLR---CYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS 168 (557)
Q Consensus 92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (557)
..+.+|+.++..|+|++|+..|++.....+.-.. .|...+.... ....++...++++
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~--------------------g~~~~A~~~L~~l 173 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLP--------------------AQRPEAINQLQRL 173 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCC--------------------ccHHHHHHHHHHH
Confidence 4577899999999999999999998764322111 1111111111 2344566668888
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHH---HHHHHHH-----------------hhhcH-----
Q 008705 169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWN---AWSELKS-----------------LCTSI----- 223 (557)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~l~~-----------------~~~~~----- 223 (557)
.+..|.++.+++.+|.++...|++++|+..|++++...+.... .|..... .....
T Consensus 174 l~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 174 NADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 8889999999999999999999999999999999876544322 1211100 00000
Q ss_pred --HHHhhc--CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008705 224 --DILNSL--NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND 299 (557)
Q Consensus 224 --~~~~~l--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 299 (557)
..+... ...+.......+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 000000 0011111123458899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcH--------------HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHh
Q 008705 300 PYRVDDM--------------DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK 365 (557)
Q Consensus 300 p~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 365 (557)
|.+.... ...+.++...++++++...+++++..+|.++.++..+|.++...|++++|+.+|+++++
T Consensus 334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9875421 23356677889999999999999999999999999999999999999999999999999
Q ss_pred cCcCCHHHHHHHhH------------------------------------------HHHhcCCchHHHHHHHHHHhhCCC
Q 008705 366 LDKNYLSAWTLMGH------------------------------------------EYVEMKNTPAAIDAYRRAVDINPR 403 (557)
Q Consensus 366 ~~p~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~~al~~~p~ 403 (557)
.+|.+..++..++. ++...|++++|+..|+++++.+|+
T Consensus 414 ~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~ 493 (1157)
T PRK11447 414 MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG 493 (1157)
T ss_pred hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99998877655544 345679999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH---------------------------------------
Q 008705 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA--------------------------------------- 444 (557)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~--------------------------------------- 444 (557)
++.+++.+|.+|...|++++|+..|+++++..|+++..++.
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 99999999999999999999999999999988887665443
Q ss_pred -----------------------------------HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705 445 -----------------------------------MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489 (557)
Q Consensus 445 -----------------------------------l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 489 (557)
+|.++.. .|++++|+.+|++++..+|+++.++..++.++...|
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~--~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ--RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 4444555 666666666666666666666666666777776667
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705 490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 547 (557)
++++|+..++++++ ..|+++.++..+|.++...|++++|..+|++++...|
T Consensus 652 ~~~eA~~~l~~ll~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 652 DLAAARAQLAKLPA-------TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 77777766666665 4566666666677777777777777777777766543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7e-34 Score=315.78 Aligned_cols=443 Identities=13% Similarity=0.063 Sum_probs=346.8
Q ss_pred ccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchh--------------------hHHHHHHHHhhccc--chHHHH
Q 008705 85 EDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSV--------------------FLRCYALYLAGEKR--KEEEMI 142 (557)
Q Consensus 85 ~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~--------------------~l~~~~~~l~~~~~--~~~~~~ 142 (557)
.+|......+.+|++++..|++++|+..|+++...... .+..+..++..... ....+.
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 45666678889999999999999999999987542211 11111111211100 001111
Q ss_pred Hhh----CC----------CCCchhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC
Q 008705 143 ELE----GP----------LGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW 208 (557)
Q Consensus 143 ~~~----~~----------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 208 (557)
... .. .+......+++..+...+++.++.+|.++.+++.+|.++.+.|++++|+..|+++++.+|.
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 000 00 0111123455677777777777777888888888888888888888888888888887776
Q ss_pred CHH--HHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHH
Q 008705 209 NWN--AWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFE 286 (557)
Q Consensus 209 ~~~--a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 286 (557)
+.. .|..+. ....+.....+|.++...|++++|+..|++++..+|+++.++..+|.++...|+++
T Consensus 336 ~~~~~~~~~ll-------------~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~ 402 (1157)
T PRK11447 336 SSNRDKWESLL-------------KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA 402 (1157)
T ss_pred ccchhHHHHHH-------------HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 543 232220 01122223346888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHH------------------------------------------hccchhHHHH
Q 008705 287 QVEVIFEELLRNDPYRVDDMDMYSNVLY------------------------------------------AKECFSALSY 324 (557)
Q Consensus 287 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~ 324 (557)
+|+..|+++++.+|.+..++..++.++. ..++++++..
T Consensus 403 eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 403 AAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE 482 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999888777766542 3467778888
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH-------
Q 008705 325 LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA------- 397 (557)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------- 397 (557)
.+++++..+|.++.+++.+|.+|...|++++|+..++++++.+|.++.+++.++..+...+++++|+..++++
T Consensus 483 ~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 483 LQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 8888888888888888888888888899999999998888888888888888888888888888888887653
Q ss_pred ---------------------------------HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705 398 ---------------------------------VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA 444 (557)
Q Consensus 398 ---------------------------------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 444 (557)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 563 ~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 23367777888999999999999999999999999999999999999
Q ss_pred HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc---chHHHHHH
Q 008705 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP---NMVEALIF 521 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~ 521 (557)
++.++.. .|++++|+..+++++...|+++.++..+|.++...|++++|+.+|++++...+ ..| ....++..
T Consensus 643 la~~~~~--~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~----~~~~~~~~a~~~~~ 716 (1157)
T PRK11447 643 LIEVDIA--QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK----SQPPSMESALVLRD 716 (1157)
T ss_pred HHHHHHH--CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc----cCCcchhhHHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999998310 112 23456777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 522 LATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 522 la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
+|.++...|++++|+..|++++...
T Consensus 717 ~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 717 AARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 8999999999999999999998744
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7e-33 Score=289.71 Aligned_cols=340 Identities=15% Similarity=0.119 Sum_probs=292.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
+..+..+|..++..|+|++|+..|++++...|+ ...+.. +|.+|..+|++++|+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n-------------------------~a~~~~~l~~~~~Ai 180 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSN-------------------------RAACHNALGDWEKVV 180 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHH-------------------------HHHHHHHhCCHHHHH
Confidence 456788999999999999999999999999996 444443 499999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC------------------------------CCCc
Q 008705 256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY------------------------------RVDD 305 (557)
Q Consensus 256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------------------------~~~~ 305 (557)
..++++++.+|++..++..+|.++..+|++++|+..|..+...++. +...
T Consensus 181 ~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 181 EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999887666544332 2222
Q ss_pred HHHHHHHHH------------------------------------hccchhHHHHHHHHHHhh---CCCChhHHHHHHHH
Q 008705 306 MDMYSNVLY------------------------------------AKECFSALSYLAHRVFMT---DKYRPESCCIIGNY 346 (557)
Q Consensus 306 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~ 346 (557)
+..++..+. ..+.++++...+..++.. .|....++..+|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 222222111 113566777778888765 46677889999999
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
+...|++++|+..|++++.++|.+..+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705 427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (557)
+|++++.++|++...+..+|.++.. +|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--- 495 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYK--EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--- 495 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcchHH------HHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 507 AEEREGPNMVE------ALIFLA-THCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 507 ~~~~~~~~~~~------~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
..|.... .+...+ .++...|++++|..++++++.++|.+.
T Consensus 496 ----l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 496 ----LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred ----cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 4443222 122333 334457999999999999999986553
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4.2e-32 Score=282.65 Aligned_cols=322 Identities=14% Similarity=0.006 Sum_probs=251.1
Q ss_pred hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705 154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN 233 (557)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~ 233 (557)
..+++..+...+.......|.++.+++.+|.+....|++++|+..|++++..+|.+..++..+
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l----------------- 116 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV----------------- 116 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH-----------------
Confidence 345666777777777777888888888888888888888888888888888888888777655
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|.+...+.... .+
T Consensus 117 --------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l 187 (656)
T PRK15174 117 --------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SF 187 (656)
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HH
Confidence 778888888888888888888888888888888888888888888888888888888887766554443 36
Q ss_pred HhccchhHHHHHHHHHHhhCCC-ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH---
Q 008705 314 YAKECFSALSYLAHRVFMTDKY-RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA--- 389 (557)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--- 389 (557)
...++.+++...++.++..+|. .......++.++...|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus 188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHH
Confidence 6677778887777777776653 333445557777778888888888888888888888888888888888888775
Q ss_pred -HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705 390 -AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468 (557)
Q Consensus 390 -A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al 468 (557)
|+..|++++..+|++..++..+|.++...|++++|+..+++++.++|+++.++..+|.++.. .|++++|+..|++++
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~--~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ--VGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888887 888888888888888
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
..+|.++..+..+|.++...|++++|+..|+++++
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 87787776666677778888888888888888877
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=9.7e-32 Score=279.89 Aligned_cols=342 Identities=12% Similarity=0.000 Sum_probs=318.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
.+.......+..+.+.|++++|...++.++...|.+..++..+ |.+....|++++
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l-------------------------~~~~l~~g~~~~ 94 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRW-------------------------VISPLASSQPDA 94 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHH-------------------------hhhHhhcCCHHH
Confidence 4445567778888999999999999999999999999998777 888889999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705 254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333 (557)
Q Consensus 254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (557)
|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.+..++..++.++...++.+++...+..+....
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
|.++..+..++. +...|++++|+..+++++..+|. .......++.++...|++++|+..|++++..+|++..++..+|
T Consensus 175 P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 PPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred CCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999988877654 78899999999999999998763 3445566788999999999999999999999999999999999
Q ss_pred HHHHHhCChHH----HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 413 QAYEMMHMPLY----ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 413 ~~~~~~~~~~~----A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
.++...|++++ |+..|++++..+|+++.++..+|.++.. .|++++|+..+++++..+|+++.++..+|.++...
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~--~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR--TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 99999999996 8999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
|++++|+..|++++. ..|..+..+..+|.++...|++++|...|+++++..|...
T Consensus 332 G~~~eA~~~l~~al~-------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 332 GQYTAASDEFVQLAR-------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHH-------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999998 6888888788889999999999999999999999987653
No 14
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-29 Score=223.39 Aligned_cols=369 Identities=18% Similarity=0.162 Sum_probs=330.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh-------cCCChhHHHHHHHHHHHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS-------LNLNNHWMKDYFLASAYQ 246 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~-------l~~~~~~~~~~~la~~~~ 246 (557)
..|.....++..+.+-++..++.-.|...+...|--..+...+..+........+ +....+|...+..+.+..
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~ 207 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM 207 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence 4577778888888888888899999999999999888777777777665555544 244567888777777777
Q ss_pred HHhhhHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHH
Q 008705 247 ELRMHKESL--TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSY 324 (557)
Q Consensus 247 ~~~~~~~A~--~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 324 (557)
..++...|. .++-......|++...+..+|.+++..|++++|+..|+++...+|+...+++.++.++...++.+....
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 777766555 455566778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC
Q 008705 325 LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404 (557)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (557)
+...++..+.....-|+.-+...+..+++..|+.+-+++++.+|.+..++...|..+..+|+.++|+-.|+.|..+.|.+
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA-QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 483 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 483 (557)
.+.|.+|..+|...|++.+|...-+.+++..|.++..+..+| .++... -.--++|.+++++++.+.|....+...+|.
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d-p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD-PRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC-chhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 444320 345589999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
++...|++++++..+++.+. ..| +...+..||.++...+.+++|+++|..++.++|.+..
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~-------~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLI-------IFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHhhCccchHHHHHHHHHh-------hcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999998 444 5668999999999999999999999999999987654
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=3.5e-29 Score=248.84 Aligned_cols=432 Identities=18% Similarity=0.182 Sum_probs=360.4
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh-HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF-LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS 168 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (557)
.+..|++|++|+.+|+|++|-.+|..++...+.+ +.. . -.+++....++++..+...+++.
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~--~----------------~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP--L----------------VGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc--c----------------cchhHHHHHhchHHHHHHHHHHH
Confidence 3567888888888888888888777776544332 111 1 12233344567778888889999
Q ss_pred hcCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh-------------cCC
Q 008705 169 WKNGTVDPFGLYLYGIVLKDKG----NENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS-------------LNL 231 (557)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~-------------l~~ 231 (557)
.+..|++......+|..|...+ ..+.|..+..++++..|.+..+|..++.++...+...+ ...
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGK 448 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999886 77899999999999999999999999998664433222 122
Q ss_pred ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc-----CCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705 232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGT-----FSF-----SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY 301 (557)
Q Consensus 232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 301 (557)
+-.......+|..++..|++.+|...|.+++.. +++ +....+.+|+++...++++.|.+.|..+++..|.
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 223333456899999999999999999999876 222 2235899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc--CCHHHHHHHhH
Q 008705 302 RVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--NYLSAWTLMGH 379 (557)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 379 (557)
..+++..++.+....+...++..++..++..+..+|.++..+|++|....++..|.+-|...++... .++.+...||+
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 9999999998888899999999999999999999999999999999999999999998887776532 35677788898
Q ss_pred HHHh------------cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705 380 EYVE------------MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447 (557)
Q Consensus 380 ~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 447 (557)
++++ .+.+++|+..|.++++.+|.+..+-.++|.++...|++.+|+..|.++.+--.+++.+|.++|.
T Consensus 609 ~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah 688 (1018)
T KOG2002|consen 609 VYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAH 688 (1018)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHH
Confidence 7763 3567899999999999999999999999999999999999999999998877778899999999
Q ss_pred HHhHHhcCcHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705 448 CYETEQLHMLEEAIKCYRRAANCN--DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 525 (557)
Q Consensus 448 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 525 (557)
||.. +|+|..|++.|+.+++.. .+++.++..||.++...|.+.+|..++.+++. ..|.++.+.+++|.+
T Consensus 689 ~~~e--~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~-------~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 689 CYVE--QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH-------LAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------hCCccchHHhHHHHH
Confidence 9999 999999999999999863 35688999999999999999999999999999 789999999999888
Q ss_pred HHHc-------------------CCHHHHHHHHHHHhccCCC
Q 008705 526 CRAH-------------------GRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 526 ~~~~-------------------g~~~~A~~~~~~al~~~~~ 548 (557)
..+. +..+.|.++|..+-...+.
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7653 4567777777777665543
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3e-29 Score=231.27 Aligned_cols=337 Identities=16% Similarity=0.118 Sum_probs=213.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
+..+-.+|.-+++.|+|++||++|.++|+.+|+.+..+... +.||...|++++.+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNr-------------------------aAcY~~lgd~~~Vi 169 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNR-------------------------AACYESLGDWEKVI 169 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhH-------------------------HHHHHHHhhHHHHH
Confidence 34567789999999999999999999999999976666555 88999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHH------------------HHHH--------------hCCCCC
Q 008705 256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFE------------------ELLR--------------NDPYRV 303 (557)
Q Consensus 256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------------~~l~--------------~~p~~~ 303 (557)
+...++++++|+...+++.++.++...|++++|+.... +.++ ..|.-+
T Consensus 170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP 249 (606)
T KOG0547|consen 170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP 249 (606)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Confidence 99999999999999999999999999999888765431 1111 011111
Q ss_pred Cc-----------------------------------------------------------------------------H
Q 008705 304 DD-----------------------------------------------------------------------------M 306 (557)
Q Consensus 304 ~~-----------------------------------------------------------------------------~ 306 (557)
.+ +
T Consensus 250 S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 250 SATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred cHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 00 0
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC
Q 008705 307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN 386 (557)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 386 (557)
...+...+..|+...+...+..++..+|..+..+..+|-.|....+.++-...|.+|..++|.++++|+..|.+++-+++
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 00111112223333344444444555555555555555555555555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466 (557)
Q Consensus 387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 466 (557)
+++|+..|++++.++|.+.-++..++.+.+++++++++...|+.+++..|+.++++...|.++.. ++++++|++.|.+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD--qqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD--QQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh--HHhHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555 5555555555555
Q ss_pred HHhcCCC------hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 467 AANCNDS------EAIALNQLAKLH-HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539 (557)
Q Consensus 467 al~~~p~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 539 (557)
++.+.|. ++..+...|.+. .-.+++.+|+.+++++++ .+|....++..||.+..++|+.++|+++|
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e-------~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE-------LDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc-------cCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555554 222222222221 122455555555555555 78888999999999999999999999999
Q ss_pred HHHhccC
Q 008705 540 TRLLDYT 546 (557)
Q Consensus 540 ~~al~~~ 546 (557)
+++..+.
T Consensus 561 Eksa~lA 567 (606)
T KOG0547|consen 561 EKSAQLA 567 (606)
T ss_pred HHHHHHH
Confidence 9998764
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.5e-28 Score=242.80 Aligned_cols=437 Identities=17% Similarity=0.206 Sum_probs=354.8
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhc--------CCch---hhHHHHHHHHhh----cccchH--HHHH----hhCCCC
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQT--------GRRS---VFLRCYALYLAG----EKRKEE--EMIE----LEGPLG 149 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~--------~~~~---~~l~~~~~~l~~----~~~~~~--~~~~----~~~~~~ 149 (557)
+.-...|..||..|+.++.+.+|+... +... ..+..++.|++- ++.+.+ +... +.....
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 445556999999999999999999876 2221 233344444432 111111 1110 000000
Q ss_pred ------Cch----------hhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHH
Q 008705 150 ------KSN----------AVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAW 213 (557)
Q Consensus 150 ------~~~----------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 213 (557)
.+. .....++.+.+.+....+..|++...++..|.+.+..|+|..|+.+|++++.++|....-.
T Consensus 122 ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred HhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 000 0111267888888888899999999999999999999999999999999999998754211
Q ss_pred HHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---ccHHHHHH
Q 008705 214 SELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL---REFEQVEV 290 (557)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~ 290 (557)
....|.|+.++|+.+.|+..|+++++++|.+..++..+|.+-... ..+..+..
T Consensus 202 ------------------------rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 202 ------------------------RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ------------------------cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 123489999999999999999999999999999999998876554 45789999
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC---CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC
Q 008705 291 IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK---YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD 367 (557)
Q Consensus 291 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 367 (557)
.+.++...+|.++.++..+++.++..+++..+..++..++.... ..++.++.+|..|..+|++++|..+|.++++.+
T Consensus 258 ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 258 LLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999998877653 355679999999999999999999999999999
Q ss_pred cCC-HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----ChHHHHHHHHHHHhcCCCCHHHH
Q 008705 368 KNY-LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----MPLYALHYFRKSVFLQPNDSRLW 442 (557)
Q Consensus 368 p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~~~p~~~~~~ 442 (557)
+++ .-.++.+|.+++..|+++.|+.+|++++...|++..+...||.+|...+ ..+.|..+..++++..|.+.++|
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 988 7889999999999999999999999999999999999999999999886 66889999999999999999999
Q ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC---cc
Q 008705 443 IAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG---PN 514 (557)
Q Consensus 443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~ 514 (557)
..++.++.. ++.-.++..|.+|+.+ .+--+++++++|..++..|++.+|...|..++..+......+ ..
T Consensus 418 l~laql~e~---~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 418 LELAQLLEQ---TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHh---cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 999999986 5555669999998843 344578999999999999999999999999998633211111 12
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 008705 515 MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLK 555 (557)
Q Consensus 515 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~ 555 (557)
.....+++|.++...++++.|.+.|..+++.. |...+++.
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~yl 534 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYL 534 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHH
Confidence 34568999999999999999999999999987 44555443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=6e-28 Score=256.97 Aligned_cols=356 Identities=11% Similarity=-0.039 Sum_probs=274.9
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHH
Q 008705 161 LERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240 (557)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 240 (557)
+.....+.....|..+.++..+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 34 A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l------------------------ 89 (765)
T PRK10049 34 VITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL------------------------ 89 (765)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------------------
Confidence 33344444445677788888999999999999999999999999999888887766
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
+.++...|++++|+..++++++.+|+++. +..+|.++...|++++|+..++++++..|++..++..++.++...+..+
T Consensus 90 -a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 -ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred -HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 55566666666666666666666666666 6666666666666666666666666666666555555555544333322
Q ss_pred ----------------------------------------------HHHHHHHHHHhhCCCChhHH-------HH-HHHH
Q 008705 321 ----------------------------------------------ALSYLAHRVFMTDKYRPESC-------CI-IGNY 346 (557)
Q Consensus 321 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~-------~~-la~~ 346 (557)
++...++.++...|.+|... .. ++ .
T Consensus 168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~ 246 (765)
T PRK10049 168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-A 246 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-H
Confidence 33334444554433333321 11 33 3
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCH-HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCCh
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYL-SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD----YRAWYGLGQAYEMMHMP 421 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~ 421 (557)
+...|++++|+..|+++++..+..+ .+...+|.++...|++++|+..|++++..+|.+ ......++.++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4577999999999999998864322 244446999999999999999999999988766 35677788889999999
Q ss_pred HHHHHHHHHHHhcCCC-------------C--HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 422 LYALHYFRKSVFLQPN-------------D--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~-------------~--~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
++|+..++++....|. + ..++..++.++.. .|++++|+..+++++...|.++.++..+|.++.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~--~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY--SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999988763 2 3467889999999 999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 008705 487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT 552 (557)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 552 (557)
..|++++|+..+++++. ..|++..+++.+|.++...|++++|...++++++..|++...
T Consensus 405 ~~g~~~~A~~~l~~al~-------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 405 ARGWPRAAENELKKAEV-------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred hcCCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999 789999999999999999999999999999999998776543
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=8.3e-27 Score=248.00 Aligned_cols=450 Identities=12% Similarity=-0.026 Sum_probs=291.7
Q ss_pred cccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCC---C-Cchhh-----
Q 008705 84 EEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPL---G-KSNAV----- 154 (557)
Q Consensus 84 ~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~-~~~~~----- 154 (557)
+.+|......+.||+.|+..|++++|+..++++....+....++.. +..- ++...++.....+ . .....
T Consensus 72 ~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i-~~~~kA~~~ye~l~~~~P~n~~~~~~la 149 (987)
T PRK09782 72 QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAI-PVEVKSVTTVEELLAQQKACDAVPTLRC 149 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHh-ccChhHHHHHHHHHHhCCCChhHHHHHH
Confidence 3456666788899999999999999999999988755543333221 2221 2333332211111 1 00000
Q ss_pred ----------chhHHHHHHHHhhhhcCCCC-Chh-HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhc
Q 008705 155 ----------NRELISLERELSTSWKNGTV-DPF-GLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTS 222 (557)
Q Consensus 155 ----------~~~l~~~~~~l~~~~~~~~~-~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 222 (557)
......+...|. .....|. ++. +.+.++.+|.++|++++|+..+++.++..|.+...+..|+.++..
T Consensus 150 ~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 150 RSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 122233344444 2222332 344 555569999999999999999999999999998877766664333
Q ss_pred H-H----------HH-h--------------------------hc-----CCC--hhHHHH-------------------
Q 008705 223 I-D----------IL-N--------------------------SL-----NLN--NHWMKD------------------- 238 (557)
Q Consensus 223 ~-~----------~~-~--------------------------~l-----~~~--~~~~~~------------------- 238 (557)
. + .+ . ++ ..+ ..|...
T Consensus 229 ~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 229 GQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred hhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 1 0 00 0 00 000 000000
Q ss_pred --------HHHHHHHHHHh-----------------------------hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008705 239 --------YFLASAYQELR-----------------------------MHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS 281 (557)
Q Consensus 239 --------~~la~~~~~~~-----------------------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 281 (557)
.-.+..+...+ .+.++......+....|.+...+.+++.....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 00011122222 22222222233333335556666666666666
Q ss_pred cccHHHHHHHHHHHHHh---------------------------------------------------------------
Q 008705 282 LREFEQVEVIFEELLRN--------------------------------------------------------------- 298 (557)
Q Consensus 282 ~g~~~~A~~~~~~~l~~--------------------------------------------------------------- 298 (557)
.|++++|...|+++...
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 66666666666555543
Q ss_pred --CCC--CCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHH
Q 008705 299 --DPY--RVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW 374 (557)
Q Consensus 299 --~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 374 (557)
.|. +..++..++.++.. +...++...+.+++...|... ....+|..+...|++++|+..|++++...|. ...+
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~ 545 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDL 545 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHH
Confidence 222 22333334444433 344445555555555555432 2444555556677777777777776655444 3456
Q ss_pred HHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc
Q 008705 375 TLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL 454 (557)
Q Consensus 375 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 454 (557)
..+|.++...|++++|+.+|++++..+|.+...+..++......|++++|+..|+++++.+|+ +..+..+|.++.+ .
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~--l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ--R 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH--C
Confidence 677777888888888888888888888877777776666666779999999999999999996 8889999999999 9
Q ss_pred CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705 455 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE 534 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 534 (557)
|++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++ ..|+++.+++++|.++...|++++
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-------l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK-------GLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999998 689999999999999999999999
Q ss_pred HHHHHHHHhccCCCc
Q 008705 535 AEVYCTRLLDYTGPV 549 (557)
Q Consensus 535 A~~~~~~al~~~~~~ 549 (557)
|..+|+++++++|..
T Consensus 696 A~~~l~~Al~l~P~~ 710 (987)
T PRK09782 696 TQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999988654
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=4.9e-27 Score=249.74 Aligned_cols=442 Identities=14% Similarity=0.069 Sum_probs=346.4
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcC------CchhhHHHHHHHHh----------------------------hcc
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTG------RRSVFLRCYALYLA----------------------------GEK 135 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~------~~~~~l~~~~~~l~----------------------------~~~ 135 (557)
......++..|...|++++|...+++... .....+...+++-. .++
T Consensus 247 ~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 247 PQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhc
Confidence 35666789999999999999999887532 11222222211111 123
Q ss_pred cchHHHHHhhCCCCCch---------hhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccC
Q 008705 136 RKEEEMIELEGPLGKSN---------AVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSY 206 (557)
Q Consensus 136 ~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 206 (557)
+..+.+.++........ ...+...++..++..+.+..|.++..+...+....+.|++++|...|+++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~ 406 (987)
T PRK09782 327 GQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ 406 (987)
T ss_pred cHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC
Confidence 33333333322111111 112344555666666777779999999999999999999999999999999863
Q ss_pred CCC---HHHHHHHHHhhhcHHHHhhcCCChhHHHHHHH------HHHHHHHhhhH---HHHHHHHHHHhcCCC--CHHHH
Q 008705 207 PWN---WNAWSELKSLCTSIDILNSLNLNNHWMKDYFL------ASAYQELRMHK---ESLTKYEYLQGTFSF--SNYIQ 272 (557)
Q Consensus 207 p~~---~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~l------a~~~~~~~~~~---~A~~~~~~~l~~~p~--~~~~~ 272 (557)
++- ......++.++.+...+.. +... ..+ ..-..-.|+.. .+...+.+++...|. ++.++
T Consensus 407 ~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~ 480 (987)
T PRK09782 407 GDARLSQTLMARLASLLESHPYLAT---PAKV---AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW 480 (987)
T ss_pred cccccCHHHHHHHHHHHHhCCcccc---hHHH---HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence 322 2233366666554322110 0000 000 00122244443 455666666777788 99999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705 273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ 352 (557)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 352 (557)
..+|.++.. ++..+|+..+.+++...|... ....++.++...++++++...++++....|. ...+..+|.++...|+
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd 557 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCC
Confidence 999999987 899999999999999999753 3445566677899999999999998776555 4567889999999999
Q ss_pred hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
+++|+.+|+++++.+|.....+..++......|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..|++++
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999888887777777889999999999999999996 9999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512 (557)
Q Consensus 433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (557)
.++|+++.++.++|.++.. .|++++|+..|+++++..|+++.+++++|.++...|++++|+.+|+++++ ..
T Consensus 637 ~l~Pd~~~a~~nLG~aL~~--~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-------l~ 707 (987)
T PRK09782 637 ELEPNNSNYQAALGYALWD--SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID-------DI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999 78
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
|+.+.+....|.+.....+++.|.+.+.+...++|...
T Consensus 708 P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 708 DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999986543
No 21
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-27 Score=217.82 Aligned_cols=389 Identities=12% Similarity=0.028 Sum_probs=303.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhcC--Cc-hhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705 94 YLLAKSYFDCREYRRAAHVLRDQTG--RR-SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK 170 (557)
Q Consensus 94 ~~la~~~~~~~~y~~A~~~l~~~~~--~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (557)
-..|+-+|..|+|++|+++|..+++ ++ +.|....+.....- +.++ ...+...+.+.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l-gd~~--------------------~Vied~TkALE 177 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESL-GDWE--------------------KVIEDCTKALE 177 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH-hhHH--------------------HHHHHHHHHhh
Confidence 3459999999999999999999876 33 56665544433221 1222 23333555666
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh-ccCCCCHHHHHHHHHhhhcHH------HHhh----cCCChhHHHHH
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESV-NSYPWNWNAWSELKSLCTSID------ILNS----LNLNNHWMKDY 239 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~l~~~~~~~~------~~~~----l~~~~~~~~~~ 239 (557)
.+|+-.-+++.++..+...|++++|+.-..-.. -.+-.|.+....+-+...... .+.. +.+...++..|
T Consensus 178 l~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 178 LNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred cCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 789999999999999999999999987654332 111122222222222211111 1110 00001111111
Q ss_pred H-----------------------HHHHHHHHh---hhHHHHHHHHHHHhcC---C-CC---------HHHHHHHHHHHH
Q 008705 240 F-----------------------LASAYQELR---MHKESLTKYEYLQGTF---S-FS---------NYIQAQIAKAQY 280 (557)
Q Consensus 240 ~-----------------------la~~~~~~~---~~~~A~~~~~~~l~~~---p-~~---------~~~~~~la~~~~ 280 (557)
+ -+.-.+..+ .|.+|...+.+..... + .+ ..++...|..++
T Consensus 258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 1 111222223 4666666665543321 1 12 566788888899
Q ss_pred hcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHH
Q 008705 281 SLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360 (557)
Q Consensus 281 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 360 (557)
-.|+.-.|...|+.++.++|.+...+..++.++...++..+....+..+..++|.++.+|+..|.+++..+++++|+.-|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---
Q 008705 361 RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN--- 437 (557)
Q Consensus 361 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--- 437 (557)
++++.++|.+..++..++...++.+++++++..|+.+....|+.++.+...|.++..+++|+.|++.|.+++.+.|.
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 438 ---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 438 ---~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
++..+...|.+..+ +.+++..|+.++.+|++++|....++..||.+..++|+.++|+++|++++..
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66677777766665 4799999999999999999999999999999999999999999999999984
No 22
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-26 Score=208.98 Aligned_cols=362 Identities=16% Similarity=0.210 Sum_probs=306.2
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhh
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSW 169 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 169 (557)
+.-.|+.|.++-+.|.-..|+..|..++..-|.|..++......-. ..+.. ..+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit--~~e~~-----------------------~~l~ 218 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT--DIEIL-----------------------SILV 218 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc--hHHHH-----------------------HHHH
Confidence 4667788999999999999999999998877777666433222110 01111 1111
Q ss_pred cCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHhcc-CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHH
Q 008705 170 KNGT--VDPFGLYLYGIVLKDKGNENLARTVFVESVNS-YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQ 246 (557)
Q Consensus 170 ~~~~--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~ 246 (557)
...| .+...-+-++.++....+.++++.-++..+.. .|.+.-.-. ..|.+..
T Consensus 219 ~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~-------------------------~~A~~~y 273 (559)
T KOG1155|consen 219 VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKT-------------------------QIAAASY 273 (559)
T ss_pred hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHH-------------------------HHHHHHh
Confidence 1123 44455667788888888889998888888776 565543222 2488888
Q ss_pred HHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705 247 ELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326 (557)
Q Consensus 247 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (557)
...++++|+..|+.+.+.+|-..+-.-....+++-..+-.+---+-+.+..++..+++.....++.+...++.+++...+
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 99999999999999999999877767777777777776666666677788899999999999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH
Q 008705 327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 406 (557)
+++++.+|....+|..+|.-|..+.+...|+..|++|++++|.+..+|+.+|+.|.-++...=|+-+|++|+...|+|.+
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR 433 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR 433 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh-------cCCChHHHHH
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-------CNDSEAIALN 479 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~ 479 (557)
.|..||.+|.++++.++|+++|.+++.....+..++..+|.+|.+ +++.++|..+|++.++ ..|....+..
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~--l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~ 511 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE--LKDLNEAAQYYEKYVEVSELEGEIDDETIKARL 511 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 999999999999999999999999999998889999999999999 9999999999999998 4555667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 480 QLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.||.-+.+.+++++|..+..+++.
T Consensus 512 fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 512 FLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHhhcchHHHHHHHHHHhc
Confidence 899999999999999999998887
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.2e-27 Score=229.95 Aligned_cols=300 Identities=17% Similarity=0.182 Sum_probs=272.2
Q ss_pred hHHHHHHHHHHh--cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705 177 FGLYLYGIVLKD--KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES 254 (557)
Q Consensus 177 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A 254 (557)
.++..+|..+.. +-+..+|+..|++.-...++.. |.. ..+|..|+++++|++|
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~--wvl-----------------------~q~GrayFEl~~Y~~a 372 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG--WVL-----------------------SQLGRAYFELIEYDQA 372 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch--HHH-----------------------HHHHHHHHHHHHHHHH
Confidence 355556655544 4566899999999444444433 322 2459999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC
Q 008705 255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK 334 (557)
Q Consensus 255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (557)
..+|+.+-...|-..+-.-....++++..+--+--.+.+.++..+|+.++.|..+++++..+++.+.+...++++++++|
T Consensus 373 ~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 373 ERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 99999999999987776777778888888777666777888899999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
....++..+|.-+....++++|..+|++|+..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.+
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRI 532 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
+.+.|+.++|+.+|++|+.++|.++-..+..|.++.. ++++++|+..+++.-++.|++..+++.+|.+|.+.|+.+.|
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~--~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS--LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh--hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 008705 495 AFYYKKDLE 503 (557)
Q Consensus 495 ~~~~~~al~ 503 (557)
+..|.-|..
T Consensus 611 l~~f~~A~~ 619 (638)
T KOG1126|consen 611 LLHFSWALD 619 (638)
T ss_pred HHhhHHHhc
Confidence 999999998
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=9.1e-26 Score=240.33 Aligned_cols=320 Identities=12% Similarity=0.031 Sum_probs=233.9
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHH
Q 008705 165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASA 244 (557)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~ 244 (557)
++++.+..|.++. ++.+|.++...|++++|+..|+++++..|.+..++..+ +.+
T Consensus 106 l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l-------------------------a~~ 159 (765)
T PRK10049 106 AKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY-------------------------VQA 159 (765)
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHH
Confidence 4444444455555 55555555555555555555555555555554444333 555
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHH-----hcccH---HHHHHHHHHHHHhCCCCCCcHHH--H
Q 008705 245 YQELRMHKESLTKYEYLQGTFSFSN-----YIQAQIAKAQY-----SLREF---EQVEVIFEELLRNDPYRVDDMDM--Y 309 (557)
Q Consensus 245 ~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~~~~~~--~ 309 (557)
+...+..++|+..++++.. .|+.. .....+..... ..+++ ++|+..++.+++..|.+++.... .
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 5555555556655555443 33210 01111111111 11223 66777788888765555444221 1
Q ss_pred -----HHHHHhccchhHHHHHHHHHHhhCCCChh-HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC----HHHHHHHhH
Q 008705 310 -----SNVLYAKECFSALSYLAHRVFMTDKYRPE-SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTLMGH 379 (557)
Q Consensus 310 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~ 379 (557)
...+...++.+++...++.++...+..|. +...+|.+|...|++++|+.+|++++..+|.+ ......++.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 22346778899999999998887654332 44457999999999999999999999988766 356777888
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705 380 EYVEMKNTPAAIDAYRRAVDINPRD---------------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA 444 (557)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 444 (557)
++.+.|++++|+..++++....|.. ..++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8999999999999999999987732 3567889999999999999999999999999999999999
Q ss_pred HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (557)
+|.++.. .|++++|++.+++++.++|++..+++.+|.++...|++++|...++++++ ..|+++.+..
T Consensus 399 lA~l~~~--~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~-------~~Pd~~~~~~ 465 (765)
T PRK10049 399 YASVLQA--RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA-------REPQDPGVQR 465 (765)
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCCCHHHHH
Confidence 9999999 99999999999999999999999999999999999999999999999999 6888886544
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=6.5e-26 Score=225.69 Aligned_cols=303 Identities=16% Similarity=0.167 Sum_probs=255.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
.......|..|..+...|++++|+..|+++++.+|.++.++..+ |.++...|+++
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~g~~~ 86 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLAL-------------------------GNLFRRRGEVD 86 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHH-------------------------HHHHHHcCcHH
Confidence 45566788889999999999999999999999999998877666 99999999999
Q ss_pred HHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHH
Q 008705 253 ESLTKYEYLQGTFSFS----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHR 328 (557)
Q Consensus 253 ~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (557)
+|+..+++++...+.. ..++..+|.++...|++++|+..|+++++..|.
T Consensus 87 ~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~--------------------------- 139 (389)
T PRK11788 87 RAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF--------------------------- 139 (389)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc---------------------------
Confidence 9999999998754332 356788999999999999999999999987664
Q ss_pred HHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705 329 VFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403 (557)
Q Consensus 329 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 403 (557)
+..++..++.++...|++++|+..++++++..|... ..+..+|.++...|++++|+..|+++++.+|+
T Consensus 140 -------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 212 (389)
T PRK11788 140 -------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ 212 (389)
T ss_pred -------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC
Confidence 345667788888999999999999999988877653 24567888899999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482 (557)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 482 (557)
+..++..+|.++...|++++|+..+++++...|.+ ..++..++.++.. .|++++|+..+++++...|+...+ ..++
T Consensus 213 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~g~~~~A~~~l~~~~~~~p~~~~~-~~la 289 (389)
T PRK11788 213 CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA--LGDEAEGLEFLRRALEEYPGADLL-LALA 289 (389)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCchHH-HHHH
Confidence 99999999999999999999999999999888776 4567888999999 999999999999999998876544 8899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q 008705 483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA--HGRFEEAEVYCTRLLD 544 (557)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 544 (557)
.++...|++++|+..++++++ ..|++......++..... .|+..+|+..+++.++
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~-------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLR-------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHH-------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999999999999999999998 578877655555444422 4588888888877764
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=204.30 Aligned_cols=428 Identities=15% Similarity=0.135 Sum_probs=318.2
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhhcCC----chhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705 92 DFYLLAKSYFDCREYRRAAHVLRDQTGR----RSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST 167 (557)
Q Consensus 92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 167 (557)
..+.||.-|-....+.+|+..++-+... +.-.+.. .++......+++..+.+...-
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm--------------------nigni~~kkr~fskaikfyrm 262 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM--------------------NIGNIHFKKREFSKAIKFYRM 262 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee--------------------eecceeeehhhHHHHHHHHHH
Confidence 4567899999999999999888865441 1111110 011111112222233332222
Q ss_pred hhcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH----------Hhhc---
Q 008705 168 SWKNGT-----VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI----------LNSL--- 229 (557)
Q Consensus 168 ~~~~~~-----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~----------~~~l--- 229 (557)
.+...| -...++..+|..+.+.|+|+.|+..|+..++..|+...++. |.-|.-.++. +-.+
T Consensus 263 aldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n-l~i~~f~i~d~ekmkeaf~kli~ip~~ 341 (840)
T KOG2003|consen 263 ALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN-LIICAFAIGDAEKMKEAFQKLIDIPGE 341 (840)
T ss_pred HHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh-hhhhheecCcHHHHHHHHHHHhcCCCC
Confidence 222222 12356788899999999999999999999999998766553 3222221111 1111
Q ss_pred ----------CCChh-HHHHHHHHHHHHH--Hh---hhHHHHHHHHHHHh--cCCCC--------------------HHH
Q 008705 230 ----------NLNNH-WMKDYFLASAYQE--LR---MHKESLTKYEYLQG--TFSFS--------------------NYI 271 (557)
Q Consensus 230 ----------~~~~~-~~~~~~la~~~~~--~~---~~~~A~~~~~~~l~--~~p~~--------------------~~~ 271 (557)
..|.. ....-.....+.. .. +-++++..--+++. +.|+. .++
T Consensus 342 ~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 342 IDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred CCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 11111 1111111222211 11 22333333333322 12221 122
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHh--ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705 272 QAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD-DMDMYSNVLYA--KECFSALSYLAHRVFMTDKYRPESCCIIGNYYS 348 (557)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 348 (557)
-...+..+.+.|+++.|+++++-.-+.+..... +...+..+.+. -.++..+..++..++..+..++.+....|++-+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 345566788999999999998776655543322 22344444444 347888999999999999999999999999999
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 428 (557)
..|++++|.+.|+.++.-+..+.++++++|..+..+|+.++|+++|-+...+--++.++++.++.+|..+.+..+|++++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 429 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (557)
-++..+-|++|.++..+|.+|-+ .|+-.+|.+|+-......|.+.+...+||..|....-+++|+.+|+++.-
T Consensus 582 ~q~~slip~dp~ilskl~dlydq--egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal----- 654 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQ--EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL----- 654 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhc--ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999887
Q ss_pred hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 509 EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 509 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
..|+.......++.|+.+.|+|++|.+.|+..-...|.+
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 789999999999999999999999999999998887654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.95 E-value=6.1e-23 Score=214.29 Aligned_cols=406 Identities=10% Similarity=-0.058 Sum_probs=296.0
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh---HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF---LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST 167 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 167 (557)
...|.-|...++.|+|+.|+..|++++...|.. +.-++.++. ..++ .+.+...+++
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~--------------------~~~A~~~~ek 93 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGR--------------------DQEVIDVYER 93 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCC--------------------cHHHHHHHHH
Confidence 688999999999999999999999998755543 222222222 2122 3344455666
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705 168 SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE 247 (557)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~ 247 (557)
.....+.....+..+|.++...|++++|++.|+++++.+|++..++..+ +..+..
T Consensus 94 a~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL-------------------------a~~y~~ 148 (822)
T PRK14574 94 YQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM-------------------------IMTQAD 148 (822)
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-------------------------HHHHhh
Confidence 6644455555566668899999999999999999999999999888766 555555
Q ss_pred HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh-------
Q 008705 248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS------- 320 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~------- 320 (557)
.++.++|++.++++...+|..... ..++.++...++..+|+..++++++.+|.+.+.+..+..++...+-..
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 566666666666665555553332 333444434445544666666666666655555444444333322111
Q ss_pred -----------------------------------------HHHHHHHHHHhhCCCChh-------HHHHHHHHHhhhCc
Q 008705 321 -----------------------------------------ALSYLAHRVFMTDKYRPE-------SCCIIGNYYSLKGQ 352 (557)
Q Consensus 321 -----------------------------------------~~~~~~~~~~~~~~~~~~-------~~~~la~~~~~~g~ 352 (557)
.+......++...+..|+ +..-.-.++...|+
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 122222333332233232 12233345667899
Q ss_pred hHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhCChHHHH
Q 008705 353 HEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP------RDYRAWYGLGQAYEMMHMPLYAL 425 (557)
Q Consensus 353 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~ 425 (557)
+.+++..|+...... |--..+....|..|+..+++++|+.+|++++.-.| .+......|..+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999876544 22345777889999999999999999999988653 23333577888999999999999
Q ss_pred HHHHHHHhcCC---------------CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705 426 HYFRKSVFLQP---------------NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 490 (557)
Q Consensus 426 ~~~~~a~~~~p---------------~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 490 (557)
.++++..+..| +.......++.++.. .|++.+|.+.+++.+...|.++.++..+|.++...|+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~--~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA--LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 99999987544 224567778999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 008705 491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT 552 (557)
Q Consensus 491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 552 (557)
+.+|...++.+.. ..|.+..+...+|.++..+|++.+|.....++++..|++...
T Consensus 466 p~~A~~~~k~a~~-------l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 466 PRKAEQELKAVES-------LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHhh-------hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 9999999988888 799999999999999999999999999999999999887654
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-24 Score=200.91 Aligned_cols=366 Identities=17% Similarity=0.138 Sum_probs=247.9
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh-----
Q 008705 92 DFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS----- 166 (557)
Q Consensus 92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----- 166 (557)
-.|+-|++|...+++++|...|+.++.....-....-.+.....-...+..++...++-+.....+.......++
T Consensus 143 ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k 222 (611)
T KOG1173|consen 143 ICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCK 222 (611)
T ss_pred eeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhh
Confidence 345559999999999999999998876444333332233333222222222222222111111111111111111
Q ss_pred ------------hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705 167 ------------TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234 (557)
Q Consensus 167 ------------~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~ 234 (557)
.-......++.+..-.+..++..+++.+..+.++..++.+|.+..++.-.
T Consensus 223 ~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~------------------ 284 (611)
T KOG1173|consen 223 NRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH------------------ 284 (611)
T ss_pred hccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH------------------
Confidence 00011245678888899999999999999999999999999988766432
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY 314 (557)
Q Consensus 235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 314 (557)
+| ++.+.|+..+-..+-.++++.+|+.+..|+..|..|+..|++.+|..+|.++..++|....
T Consensus 285 ------ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---------- 347 (611)
T KOG1173|consen 285 ------IA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---------- 347 (611)
T ss_pred ------HH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH----------
Confidence 34 8888898888888888899999999999999999999999999999999999999887654
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY 394 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 394 (557)
+|...|..+...|++++|+.+|.+|-++-|........+|.-|...++++-|.++|
T Consensus 348 ------------------------aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 348 ------------------------AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred ------------------------HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 55556666666677777777777777777766666666777777777777777777
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ----P---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
.+|+.+.|.++-....+|.+.+..+.|.+|..+|+.++..- + .....+.++|.++.+ ++++++|+.+|+++
T Consensus 404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk--l~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK--LNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH--HhhHHHHHHHHHHH
Confidence 77777777777777777777777777777777777666321 1 123356677777777 77777777777777
Q ss_pred HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705 468 ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 525 (557)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 525 (557)
+.+.|.++.++..+|.+|..+|+++.|+++|.+++- ..|++..+--.|+.+
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~-------l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA-------LKPDNIFISELLKLA 532 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCccHHHHHHHHHH
Confidence 777777777777777777777777777777777776 566665444444433
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1e-24 Score=217.02 Aligned_cols=274 Identities=16% Similarity=0.122 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705 237 KDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK 316 (557)
Q Consensus 237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 316 (557)
..|+.|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. .
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~------------ 103 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT-R------------ 103 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-H------------
Confidence 345678899999999999999999999999999999999999999999999999999988743211 0
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
.....++..+|.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++
T Consensus 104 -----------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 104 -----------------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred -----------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 002346778999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCh-----HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 397 AVDINPRDY-----RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 397 al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
++...|.+. ..+..+|.++...|++++|+.+|+++++..|++..++..+|.++.. .|++++|++.+++++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHC
Confidence 999888653 3567899999999999999999999999999999999999999999 999999999999999988
Q ss_pred CCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 472 DSE-AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 472 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
|.+ ..++..++.+|...|++++|...++++++ ..|+... ...++.++.+.|++++|...++++++..|++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-------~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-------EYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 876 46788999999999999999999999998 5676544 48899999999999999999999999986653
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.94 E-value=3.3e-24 Score=189.66 Aligned_cols=325 Identities=16% Similarity=0.110 Sum_probs=225.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705 172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH 251 (557)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~ 251 (557)
+|.+..-++.+|..++..|++..|+..|-.+++.+|++..+++.. |.+|+.+|+.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrR-------------------------aT~yLAmGks 88 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRR-------------------------ATVYLAMGKS 88 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHH-------------------------HHHHhhhcCC
Confidence 456778899999999999999999999999999999998887665 9999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM 331 (557)
Q Consensus 252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (557)
.-|+.-+.+++++.|+...+..+.|.++..+|++++|...|+.+++.+|.+.........+....+.
T Consensus 89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------- 155 (504)
T KOG0624|consen 89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------- 155 (504)
T ss_pred ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999776554443332211100
Q ss_pred hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
.........++..|++..|+.+..+.+++.|-+...+...+.+|...|++..||..++.+-++..++.+.++.+
T Consensus 156 ------~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 156 ------WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred ------HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 11112233344456666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHhHHhcCcHHHHHHHHHHHHhcCCChHH---
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM------------AQCYETEQLHMLEEAIKCYRRAANCNDSEAI--- 476 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 476 (557)
+.+++..|+.+.++...+.+++++|+.-.++-.+ +..... .++|.+++...++.++.+|..+.
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie--~~~~t~cle~ge~vlk~ep~~~~ir~ 307 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE--EKHWTECLEAGEKVLKNEPEETMIRY 307 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhcCCcccceee
Confidence 6666666666666666666666666654332111 112223 45666666666666666665433
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 477 -ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 477 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
....+..|+...|++.+|+....+++. .+|+++.++...|..|.....|+.|+.-|+++.+.++++
T Consensus 308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~-------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 308 NGFRVLCTCYREDEQFGEAIQQCKEVLD-------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred eeeheeeecccccCCHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 333455566666666666666666666 566666666666666666666666666666666666443
No 31
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=99.94 E-value=9.9e-27 Score=188.67 Aligned_cols=137 Identities=49% Similarity=0.722 Sum_probs=105.1
Q ss_pred ChHHHHHHHHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCCC
Q 008705 3 SKESCRNELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPV 82 (557)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (557)
+++++|.+||+++++|++|||++||||+||+|+||++.+...++..... .+.+.....+.+.
T Consensus 5 ~~~~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 66 (142)
T PF04049_consen 5 DLKEIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSS------------------SPSSSQLSPSSPS 66 (142)
T ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCccccccccccc------------------CCCccccCCCChh
Confidence 6899999999999999999999999999999999997765322111100 0000000011111
Q ss_pred ccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchh
Q 008705 83 MEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRE 157 (557)
Q Consensus 83 ~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (557)
.+..+..+.+.|++|++||+++||+||+++|+++.++...|+++|+.||+|+|++.++..++.+........|++
T Consensus 67 ~~~~~~~e~d~yllAksyFD~kEy~RaA~~L~~~~s~~~~FL~lYs~YLa~EKr~~Ee~~~~~~~~~~~~~~n~~ 141 (142)
T PF04049_consen 67 EDQLESKEYDKYLLAKSYFDCKEYDRAAHVLKDCKSPKALFLRLYSRYLAGEKRKEEEMEESLGPGDSGQSVNKE 141 (142)
T ss_pred hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHhhhhHhhcCccccchhhhcc
Confidence 222234678999999999999999999999999999999999999999999999999999988777755555543
No 32
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-21 Score=176.58 Aligned_cols=480 Identities=14% Similarity=0.073 Sum_probs=355.1
Q ss_pred HHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccC-----CCcc----cccc---ccC----CCCCCCCCCC
Q 008705 11 LRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQR-----GSSS----IRRR---FRT----NDITSTPVAG 74 (557)
Q Consensus 11 l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~---~~~----~~~~~~~~~~ 74 (557)
+...++++...||+.....++.++.++..+++...+.+...+- .+-. +++- +.. +.....|..+
T Consensus 3 ~ia~~~~~~~~~l~e~v~~~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~ 82 (564)
T KOG1174|consen 3 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNA 82 (564)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhcccccc
Confidence 5567899999999999999999999998776532222220000 0000 0000 000 0000001000
Q ss_pred CcCCCCCCccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCC--chhhHHHHH-HHHhhcccchHHHHHhhCCCCCc
Q 008705 75 VSYVSTPVMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGR--RSVFLRCYA-LYLAGEKRKEEEMIELEGPLGKS 151 (557)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~--~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~ 151 (557)
. .++.+.....+.+++.++..+.||...++-+.|+..+..+.+. .+...-..+ .+-.|...+ ++.......+.+-
T Consensus 83 ~-~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~-~~vl~ykevvrec 160 (564)
T KOG1174|consen 83 V-LVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHK-EAVLAYKEVIREC 160 (564)
T ss_pred c-cccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhcccccc-HHHHhhhHHHHhc
Confidence 0 0011111222335688999999999999999999999987652 222211111 112221111 2222111100000
Q ss_pred hhhchhHHHHHHHHh-------------hhhcCCCCChhHHH-HHHHHHHhcCChH--HHHHHHHHHhccCCCCHHHHHH
Q 008705 152 NAVNRELISLERELS-------------TSWKNGTVDPFGLY-LYGIVLKDKGNEN--LARTVFVESVNSYPWNWNAWSE 215 (557)
Q Consensus 152 ~~~~~~l~~~~~~l~-------------~~~~~~~~~~~~~~-~~g~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~ 215 (557)
. -.++.+.-.++ ......|.+++.+. .++......++.. .+..++-.-....|+|..-...
T Consensus 161 p---~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~ 237 (564)
T KOG1174|consen 161 P---MALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMA 237 (564)
T ss_pred c---hHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHH
Confidence 0 00111111111 11223455565543 3344444455544 4455566666778888876655
Q ss_pred HHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 008705 216 LKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEEL 295 (557)
Q Consensus 216 l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 295 (557)
+ |.++...|++.+|+..|+++..++|......-..|..+...|++++-..+...+
T Consensus 238 l-------------------------ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 238 L-------------------------GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred H-------------------------hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 5 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHH
Q 008705 296 LRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT 375 (557)
Q Consensus 296 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 375 (557)
+..+.....-|..-+..++..+++..+..+..+++..+|.+.+.+...|+.+...|++++|+-.|+.|..+.|...+.|.
T Consensus 293 f~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~ 372 (564)
T KOG1174|consen 293 FAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYR 372 (564)
T ss_pred HhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHH
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH-HHH-HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG-QAY-EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 453 (557)
.+.++|+..|.+.+|.-.-+.++...|.++.++..+| .++ ..-..-++|.+++++++.++|....+...++.++..
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-- 450 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV-- 450 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh--
Confidence 9999999999999999999999999999999999887 333 344456889999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 530 (557)
.|.+++++..+++.+...|+ ...+..||.++...+.+.+|..+|..++. .+|.+..+...+-.......
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR-------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCccchHHHHHHHHHHhccC
Confidence 99999999999999998876 46788999999999999999999999999 79998888777766655443
No 33
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-22 Score=189.33 Aligned_cols=202 Identities=20% Similarity=0.169 Sum_probs=176.3
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-------hHHHHHHH
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-------YRAWYGLG 412 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~ 412 (557)
...+|+..+...++..|+++|.+++.++ .+..-+.+.+.+|++.|.+.+.+.....+++..... ..+...+|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 3568999999999999999999999999 888889999999999999999999998888765433 33344577
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCC--------------------------CHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPN--------------------------DSRLWIAMAQCYETEQLHMLEEAIKCYRR 466 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~--------------------------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 466 (557)
..|...++++.|+.+|++++..... -..--..-|..++. .|+|..|+..|.+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk--~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK--KGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh--ccCHHHHHHHHHH
Confidence 7888899999999999998864322 12223445788888 9999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
++..+|+++..|.+.|.||.++|.+..|+...+++++ .+|+...+|+.-|.++..+.+|++|.+.|+++++.+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE-------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred CCchh
Q 008705 547 GPVSF 551 (557)
Q Consensus 547 ~~~~~ 551 (557)
|.+.+
T Consensus 457 p~~~e 461 (539)
T KOG0548|consen 457 PSNAE 461 (539)
T ss_pred chhHH
Confidence 76543
No 34
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-21 Score=183.62 Aligned_cols=411 Identities=16% Similarity=0.130 Sum_probs=279.8
Q ss_pred HHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCC
Q 008705 96 LAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVD 175 (557)
Q Consensus 96 la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 175 (557)
-|+..|..|+|+.|+..|.+.+...|..--+|+--.+. ......+..+.+.-.+..+.+|.-
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa------------------~a~~~~~~~al~da~k~~~l~p~w 69 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAA------------------YASLGSYEKALKDATKTRRLNPDW 69 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHH------------------HHHHhhHHHHHHHHHHHHhcCCch
Confidence 38889999999999999999876443321122111110 011233445555555566678999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh-cCCChhHHHH-------HHH-----H
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS-LNLNNHWMKD-------YFL-----A 242 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~-l~~~~~~~~~-------~~l-----a 242 (557)
+..|..+|..+.-.|+|++|+..|.+.++.+|+|......|...........+ ...|.-|+.. ..+ -
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 99999999999999999999999999999999999988888876521110000 0011111000 000 0
Q ss_pred HH-------------HHHHhhhHHHHHHHHHH---------Hh-----cCC---------C---C---------HHHHHH
Q 008705 243 SA-------------YQELRMHKESLTKYEYL---------QG-----TFS---------F---S---------NYIQAQ 274 (557)
Q Consensus 243 ~~-------------~~~~~~~~~A~~~~~~~---------l~-----~~p---------~---~---------~~~~~~ 274 (557)
.. |..-.+...|.-.+..+ .. ..| . . ..-...
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 00 00000001111111000 00 011 0 0 123467
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCC-------hhHHHHHHHHH
Q 008705 275 IAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR-------PESCCIIGNYY 347 (557)
Q Consensus 275 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~la~~~ 347 (557)
+|...+...++..|++.|..++.++ .+...+...+.+++..+.+......+..+++..... ......+|..|
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 8888888999999999999999998 777777788888888887777766666655444322 22334467788
Q ss_pred hhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHH
Q 008705 348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY 427 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 427 (557)
...++++.|+.+|++++..... ..+.-..+..++++.......-++|.-..--..-|..++..|+|..|+..
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 8899999999999998876544 45555666677777777777777777766666778888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705 428 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507 (557)
Q Consensus 428 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (557)
|.+++..+|+++..|.+.|.||.. +|.+..|+...+++++++|+...+|..-|.++..+.+|++|.+.|+++++
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~k--L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale---- 454 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLK--LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE---- 454 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 888888888888888888888888 88888888888888888888888888888888888888888888888888
Q ss_pred hhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 508 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
.+|.+.++.-.+.+|...+.......+..+++
T Consensus 455 ---~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 455 ---LDPSNAEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred ---cCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 67888888888888877654444444555553
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=2.2e-20 Score=178.72 Aligned_cols=390 Identities=14% Similarity=0.115 Sum_probs=327.6
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccC-----CCCHHHHHHHHHhhhcHHH-------Hh-
Q 008705 161 LERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSY-----PWNWNAWSELKSLCTSIDI-------LN- 227 (557)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~a~~~l~~~~~~~~~-------~~- 227 (557)
+..-|.++.+.-|.++.+|..-+..-..+|+.+.-.++..+.+..- --+-+.|..-+..+...+. +.
T Consensus 425 AkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~a 504 (913)
T KOG0495|consen 425 AKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRA 504 (913)
T ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHH
Confidence 3344555666678888888888888888888877777777766422 1234455544433221111 00
Q ss_pred --hc--CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705 228 --SL--NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV 303 (557)
Q Consensus 228 --~l--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 303 (557)
.+ ...+.......-+..+...+.++-|..+|..+++.+|....+|...+..-...|..+.-..++++++..-|...
T Consensus 505 vigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae 584 (913)
T KOG0495|consen 505 VIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE 584 (913)
T ss_pred HHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch
Confidence 01 11111122223478888889999999999999999999999999999999999999999999999999999998
Q ss_pred CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705 304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE 383 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 383 (557)
..|..++...+..|+...+..++..++..+|++-++|+....+.....+++.|..+|.++....|. ..+|+.-+.....
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ 663 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERY 663 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999987665 6789999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705 384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~ 463 (557)
+++.++|+++++++++..|+....|..+|+++..+++.+.|...|...++..|..+..|..++.+-.. .|+.-.|...
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk--~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK--DGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH--hcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc-----------------------CCcchHHHHH
Q 008705 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER-----------------------EGPNMVEALI 520 (557)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------~~~~~~~~~~ 520 (557)
++++.-.+|.+...|......-.+.|+.++|...+.++++.++..+. ....++.++.
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVll 821 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLL 821 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHH
Confidence 99999999999999999999999999999999999999986543211 1234678889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705 521 FLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHL 554 (557)
Q Consensus 521 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~ 554 (557)
..|..+....++++|.++|.++++.+|+ ..+++
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~w 854 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAW 854 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHH
Confidence 9999999999999999999999999854 33443
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=1.4e-21 Score=194.02 Aligned_cols=336 Identities=16% Similarity=0.146 Sum_probs=276.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHH
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLT 256 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~ 256 (557)
..++..|..++..|++++|..++.++|+++|.+..+|..| |.+|...|+.++++.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL-------------------------~~IyEqrGd~eK~l~ 194 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTL-------------------------GEIYEQRGDIEKALN 194 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHH-------------------------HHHHHHcccHHHHHH
Confidence 4556667778888999999999999999999999999777 999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCC
Q 008705 257 KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR 336 (557)
Q Consensus 257 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (557)
..-.+-.++|.+.+.|..++....++|++.+|.-+|.++++.+|.+.......+.++...|+...+.....+++...|..
T Consensus 195 ~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 195 FWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 99999899999999999999999999999999999999999999998888889999999999999999999999888832
Q ss_pred hh-----HHHHHHHHHhhhCchHHHHHHHHHHHhcC--cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--CCC----
Q 008705 337 PE-----SCCIIGNYYSLKGQHEKSVVYFRRALKLD--KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--NPR---- 403 (557)
Q Consensus 337 ~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~---- 403 (557)
.. .-...+.++...++.+.|++.++.++... ....+.+..++.+++...+++.|+......... .++
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 21 22345777888888899999999998832 334455778889999999999998887766551 011
Q ss_pred ----------------------ChHH-HHHHHHHHHHhCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhHHhcCcHHH
Q 008705 404 ----------------------DYRA-WYGLGQAYEMMHMPLYALHYFRKSVFLQP-NDSRLWIAMAQCYETEQLHMLEE 459 (557)
Q Consensus 404 ----------------------~~~~-~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 459 (557)
+..+ ...++.+....+...+++..+..--...| +++..+..++.++.. .|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~--~~~~~~ 432 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN--IGKYKE 432 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh--cccHHH
Confidence 1223 45555556666666667666654333334 347789999999999 999999
Q ss_pred HHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 008705 460 AIKCYRRAANCNDS-EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538 (557)
Q Consensus 460 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 538 (557)
|+.+|..+....+. +..+|+.+|.||..+|.+++|+++|++++. ..|++.++...|+.++.++|++++|.+.
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 99999999887653 366999999999999999999999999999 7999999999999999999999999999
Q ss_pred HHHHhccC
Q 008705 539 CTRLLDYT 546 (557)
Q Consensus 539 ~~~al~~~ 546 (557)
+++...-+
T Consensus 506 L~~~~~~D 513 (895)
T KOG2076|consen 506 LEQIINPD 513 (895)
T ss_pred HhcccCCC
Confidence 99877433
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=8.4e-21 Score=198.41 Aligned_cols=370 Identities=12% Similarity=-0.059 Sum_probs=281.4
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhc-------HHHHhhcCCC--hhHHHHHHH
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTS-------IDILNSLNLN--NHWMKDYFL 241 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-------~~~~~~l~~~--~~~~~~~~l 241 (557)
..|..+...|..+.+..+.|+++.|+..|+++++.+|.+..+...++.+... ...++....+ ........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 4578888999999999999999999999999999999986443344433322 2222222222 233333344
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhH
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSA 321 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 321 (557)
|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+..++++...+|..... ..++.++...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 7799999999999999999999999999999999999999999999999999999999985443 445555555566666
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHH------------------------------------------
Q 008705 322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVY------------------------------------------ 359 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~------------------------------------------ 359 (557)
+...+++++..+|.+.+++..+.......|-...|.+.
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 89999999999999999887776666555544443333
Q ss_pred ------HHHHHhcC---cCC----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCChHHHH
Q 008705 360 ------FRRALKLD---KNY----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-PRDYRAWYGLGQAYEMMHMPLYAL 425 (557)
Q Consensus 360 ------~~~al~~~---p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~ 425 (557)
++..+... |.. ..+..-.-.++...|++.+++..|+...... |--.-+....|..|..++++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 33333322 221 1222334445667888999999998776544 223446667899999999999999
Q ss_pred HHHHHHHhcCC------CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC---------------ChHHHHHHHHHH
Q 008705 426 HYFRKSVFLQP------NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND---------------SEAIALNQLAKL 484 (557)
Q Consensus 426 ~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p---------------~~~~~~~~la~~ 484 (557)
.+|++++.-.| .+......|..++.. .+++++|..++++.....| +...+...++.+
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld--~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNE--SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 99999987653 223334677788888 9999999999999988444 335678889999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 485 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
+...|++.+|.+.+++.+. ..|.++.++..+|.++...|.+.+|...++.+..++|.+.
T Consensus 426 ~~~~gdl~~Ae~~le~l~~-------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~ 484 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSS-------TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSL 484 (822)
T ss_pred HHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccH
Confidence 9999999999999999998 7999999999999999999999999999999999876653
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=6.6e-21 Score=182.20 Aligned_cols=362 Identities=12% Similarity=0.047 Sum_probs=298.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhc---------CCChhHHHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSL---------NLNNHWMKDYFLAS 243 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l---------~~~~~~~~~~~la~ 243 (557)
.+.-..|..-+..+.+.+-++-|+.+|..+++.+|.....|...+.+-...+..+++ ..|.......+.+.
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ak 592 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAK 592 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 344567888888999999999999999999999999999999887765544433332 23444444445577
Q ss_pred HHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705 244 AYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS 323 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 323 (557)
.+...|+...|..++.++++.+|++.++|+..-.+.....+++.|..+|.++....|. ...+...+++...++..+++.
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHH
Confidence 7777888888888888888888888888888888888888888888888888887664 356667777788888888888
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705 324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403 (557)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 403 (557)
.+++.+++..|..+..|..+|.++..+++.+.|...|...++..|.++..|..++.+--..|+.-.|...++++.-.+|+
T Consensus 672 rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 672 RLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008705 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 483 (557)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 483 (557)
+...|.....+-.+.|..+.|.....+|++..|++...|..-....-. -++-..++..+++ ...++.++...|.
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~--~~rkTks~DALkk----ce~dphVllaia~ 825 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR--PQRKTKSIDALKK----CEHDPHVLLAIAK 825 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC--cccchHHHHHHHh----ccCCchhHHHHHH
Confidence 888888888888888888888888888888888888877766666555 5554555544443 4677889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
+++...++++|.++|.++++ .+|++.++|.++-..+...|.-++-.+.+.++..-.|.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk-------~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVK-------KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHc-------cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 99999999999999999999 79999999999999999999999999999999987764
No 39
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4.6e-22 Score=175.06 Aligned_cols=235 Identities=16% Similarity=0.187 Sum_probs=210.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705 273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ 352 (557)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 352 (557)
.++|.||+..|-+.+|.+.++..++..| .++++..++.+|....+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-----------------------------------~~dTfllLskvY~ridQ 271 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-----------------------------------HPDTFLLLSKVYQRIDQ 271 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-----------------------------------chhHHHHHHHHHHHhcc
Confidence 5566666666666666666666666555 57889999999999999
Q ss_pred hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
+..|+..|...++..|.+......++.++..++++++|.++|+.+++.+|.+.++.-.+|..|+.-++++-|+.+|++.+
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 008705 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 509 (557)
Q Consensus 433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (557)
++.-.+++.+.++|.|++. .++++-++.+|++++....+ -.++|+++|.+....|++.-|..+|+-++.
T Consensus 352 qmG~~speLf~NigLCC~y--aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~------ 423 (478)
T KOG1129|consen 352 QMGAQSPELFCNIGLCCLY--AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT------ 423 (478)
T ss_pred HhcCCChHHHhhHHHHHHh--hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc------
Confidence 9999999999999999999 99999999999999987442 367999999999999999999999999998
Q ss_pred cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 510 REGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 510 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
.++++.+++.+||.+-.+.|+.++|..++..+-...|.-.+
T Consensus 424 -~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 424 -SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred -cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 89999999999999999999999999999999998865443
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=4.7e-21 Score=190.27 Aligned_cols=363 Identities=16% Similarity=0.149 Sum_probs=290.5
Q ss_pred hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705 154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN 233 (557)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~ 233 (557)
+.+++..+..-+..+.+.+|.++.+|+.+|.+|.++|+.+++...+-.|-.++|.+++-|..+
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l----------------- 213 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL----------------- 213 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----------------
Confidence 456788888889999999999999999999999999999999999999999999999999877
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-----CcHHH
Q 008705 234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV-----DDMDM 308 (557)
Q Consensus 234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~ 308 (557)
+....++|++.+|.-+|.++++.+|.+....+..+.+|.++|+...|...|.+++...|... +....
T Consensus 214 --------adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 214 --------ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred --------HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999211 11223
Q ss_pred HHHHHHhccchhHHHHHHHHHHh--hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc--CcC---------------
Q 008705 309 YSNVLYAKECFSALSYLAHRVFM--TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--DKN--------------- 369 (557)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~--------------- 369 (557)
.+..+...++.+.+...+...+. .+...-+.+..++.++....+++.|.......... .++
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 34455566666777777777766 34445667788999999999999999887765541 010
Q ss_pred -----------CHHH-HHHHhHHHHhcCCchHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 370 -----------YLSA-WTLMGHEYVEMKNTPAAIDAYRRAVDINP-RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 370 -----------~~~~-~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
+..+ ...++.+.++.++..+++..+..--...| ++...++.++.++...|++.+|+.+|..+....+
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1123 45556666666666666666544333334 3578899999999999999999999999988765
Q ss_pred C-CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhhhcCCc
Q 008705 437 N-DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM--EAEEREGP 513 (557)
Q Consensus 437 ~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 513 (557)
. +..+|..+|.||.. +|.+++|+.+|++++...|.+.++...|+.++.++|++++|.+.++....-- .......+
T Consensus 446 ~~~~~vw~~~a~c~~~--l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYME--LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred ccchhhhHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 3 36799999999999 9999999999999999999999999999999999999999999888754200 00001223
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 514 NMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 514 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
....+......++...|+.++=+......+
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456677888999999999988555444433
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=5.3e-24 Score=200.80 Aligned_cols=261 Identities=20% Similarity=0.212 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcc--CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705 180 YLYGIVLKDKGNENLARTVFVESVNS--YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK 257 (557)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~ 257 (557)
+.+|.++...|++++|++++++.+.. .|.+...|..+ |.+....+++++|+..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~-------------------------a~La~~~~~~~~A~~a 66 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLL-------------------------ADLAWSLGDYDEAIEA 66 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-------------------------cccccccccccccccc
Confidence 46699999999999999999765544 37777766555 8888889999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCCh
Q 008705 258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRP 337 (557)
Q Consensus 258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (557)
|++++...+.++..+..++.+ ...+++++|+.++++..+..++ +.
T Consensus 67 y~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~--------------------------------- 111 (280)
T PF13429_consen 67 YEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PR--------------------------------- 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccc-cc---------------------------------
Confidence 999999888888888788777 7889999999998888776542 23
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcC--cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLD--KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY 415 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 415 (557)
.+.....++...++++++...++++.... +.++..|..+|.++.+.|++++|+..|+++++.+|++..++..++.++
T Consensus 112 -~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 112 -YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL 190 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33334444555566666666666554433 445555666666666666666666666666666666666666666666
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705 416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 495 (557)
...|+++++...+....+..|.++..|..+|.++.. +|++++|+.+|++++..+|+++.++..+|.++...|+.++|.
T Consensus 191 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~--lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ--LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH--HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 666666665555555555555555566666666666 666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 008705 496 FYYKKDLE 503 (557)
Q Consensus 496 ~~~~~al~ 503 (557)
.++++++.
T Consensus 269 ~~~~~~~~ 276 (280)
T PF13429_consen 269 RLRRQALR 276 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 66655554
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.91 E-value=6.9e-24 Score=200.04 Aligned_cols=261 Identities=21% Similarity=0.209 Sum_probs=124.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705 240 FLASAYQELRMHKESLTKYEYLQG-T-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE 317 (557)
Q Consensus 240 ~la~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 317 (557)
-+|.++...|++++|++++.+.+. . .|+++..|..+|.+....++++.|+..|++++..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---------------- 76 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 346677777777777777755443 3 3666667777777777777777777777777666554
Q ss_pred chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705 318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397 (557)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 397 (557)
++..+..++.+ ...+++++|+.+++++.+..+ ++..+.....++...++++++...++++
T Consensus 77 ------------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~ 136 (280)
T PF13429_consen 77 ------------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKL 136 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred ------------------ccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555556666 688999999999999987664 4667778888999999999999999998
Q ss_pred HhhC--CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 398 VDIN--PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 398 l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
.... +.++..|..+|.++...|++++|+..|+++++.+|+++.++..++.++.. .|+++++...+.......|.++
T Consensus 137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~--~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID--MGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH-HTSC
T ss_pred HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHCcCHH
Confidence 7655 67889999999999999999999999999999999999999999999999 9999999999998888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
..+..+|.++..+|++++|+.+|+++++ ..|.++.++..+|.++...|+.++|..++++++..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~-------~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALK-------LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHH-------HSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHhcccccccccccccccccc-------ccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999 68999999999999999999999999999998764
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.6e-21 Score=176.51 Aligned_cols=284 Identities=15% Similarity=0.121 Sum_probs=258.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFS-NYIQAQIAKAQYS--LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA 315 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 315 (557)
...+..+++.|+++.|++++.-.-+.+... ..+-..+..+++. -.++.+|..+-..++..+..++.++...+++.+.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 456888999999999999988765554432 2233445555555 3478999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHH
Q 008705 316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYR 395 (557)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 395 (557)
.|+++++...++.++..+....++++.+|..+...|+.++|+.+|-+.-.+-.++.++++.++.+|..+.+..+|++++.
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 396 RAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 396 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
++..+-|+++.++..||.+|-+.|+-.+|..++-...+..|.+.+..-.+|..|.. ..-+++|+.+|+++--+.|+..
T Consensus 583 q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid--tqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID--TQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcCccHH
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR 531 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 531 (557)
.....++.|+.+.|+|.+|...|+..-. ..|++.+++..|.++.-.+|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hr-------kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHR-------KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH-------hCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 689999999999998877773
No 44
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=4.3e-20 Score=180.54 Aligned_cols=375 Identities=13% Similarity=0.060 Sum_probs=308.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH-------Hhh-c---CCChhHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI-------LNS-L---NLNNHWMKDYFL 241 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~-------~~~-l---~~~~~~~~~~~l 241 (557)
.+++.++-.+...+...|++..+.+.|++++...-...+.|..++..+...+. +.. + +.+++.....+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 47899999999999999999999999999999888888899988877654332 111 1 123334433333
Q ss_pred -HHHHHHHhhhHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHhCCCCCC
Q 008705 242 -ASAYQELRMHKESLTKYEYLQGTFS-----FSNYIQAQIAKAQYSL-----------REFEQVEVIFEELLRNDPYRVD 304 (557)
Q Consensus 242 -a~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~ 304 (557)
..|....+.+++++.+..+++.... -.+..+..+|.+|-.+ ....++++.++++++.+|.++.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 4456778899999999999988421 1355677777777543 2357889999999999999999
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHhh-CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705 305 DMDMYSNVLYAKECFSALSYLAHRVFMT-DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE 383 (557)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 383 (557)
+.+.++.-+...++...+...+++++.. ..+++..|..++.++...+++..|+...+-++...|++........++-..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 9999999999999999999999999999 677899999999999999999999999999999888865554444444444
Q ss_pred cCCchHHHHHHHHHHhhC--------------------------------------------------------C-----
Q 008705 384 MKNTPAAIDAYRRAVDIN--------------------------------------------------------P----- 402 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~--------------------------------------------------------p----- 402 (557)
.++.++|+..+...+.+. |
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 555555544443333220 1
Q ss_pred ---CC-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 403 ---RD-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 403 ---~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
+. ...|...+..+...+..++|..++.++-.+.|..+..|+..|.++.. .|+.++|...|..++.++|++
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~--~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV--KGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH--HHhhHHHHHHHHHHHhcCCCC
Confidence 00 34577888999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 008705 475 AIALNQLAKLHHALGRDEEAAF--YYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFT 552 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 552 (557)
+.+...+|.++.+.|+..-|.. .+..+++ .+|.++++|+.+|.++.+.|+.++|.++|.-++++.+.+.+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr-------~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALR-------LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 9999999999999999888888 9999999 799999999999999999999999999999999998877766
Q ss_pred hhhc
Q 008705 553 HLKN 556 (557)
Q Consensus 553 a~~~ 556 (557)
.+.+
T Consensus 791 pFs~ 794 (799)
T KOG4162|consen 791 PFSN 794 (799)
T ss_pred cccc
Confidence 5554
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.90 E-value=8.9e-19 Score=188.33 Aligned_cols=395 Identities=7% Similarity=-0.047 Sum_probs=241.1
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhcCCchh--hHHHHHHHH--hhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705 95 LLAKSYFDCREYRRAAHVLRDQTGRRSV--FLRCYALYL--AGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK 170 (557)
Q Consensus 95 ~la~~~~~~~~y~~A~~~l~~~~~~~~~--~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (557)
.+=..+.+.|++++|..+|+........ -.-.+..++ ....+..+++..+ ++...
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~l--------------------f~~M~- 433 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF--------------------AKLIR- 433 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHH--------------------HHHcC-
Confidence 3345566889999999999987553211 011111111 1122233333332 22222
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC-CHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW-NWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR 249 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~ 249 (557)
..+...+..+-..+.+.|++++|..+|.++.+.... +...|..+ ...|.+.|
T Consensus 434 --~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL-------------------------I~~y~k~G 486 (1060)
T PLN03218 434 --NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL-------------------------ISTCAKSG 486 (1060)
T ss_pred --CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------HHHHHhCc
Confidence 145666777777778888888888888887765432 33334333 55666677
Q ss_pred hhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-CCCCcHHHHHHHHHhccchhHHHHHHH
Q 008705 250 MHKESLTKYEYLQGTFS-FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP-YRVDDMDMYSNVLYAKECFSALSYLAH 327 (557)
Q Consensus 250 ~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (557)
+.++|.++|+++.+... .+...|..+...|.+.|++++|+..|+.+....- .+...+..+...+...++.+++..++.
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777777665432 2556666667777777777777777776655321 123345555566666677777766666
Q ss_pred HHHhh---CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--C
Q 008705 328 RVFMT---DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--N 401 (557)
Q Consensus 328 ~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~ 401 (557)
.+... -..+..++..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...|.+.|++++|+..|+++... .
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 66542 12234566666667777777777777777776654 345566777777777777777777777776654 3
Q ss_pred CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHH
Q 008705 402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALN 479 (557)
Q Consensus 402 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 479 (557)
| +...|..+...|.+.|++++|..+++++.+.. +.+...+..+...|.+ .|++++|.++|++..... ..+...|.
T Consensus 647 P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k--~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 647 P-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN--AKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3 35566667777777777777777777766643 3345667777777777 777777777777665431 12345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 480 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
.+...|.+.|++++|.++|+++... +..| +...+..+...+.+.|++++|..++.++.+..
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~-----Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRL-----GLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 7777777777777777777766541 1223 34455556666777777777777777776654
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=3.4e-22 Score=189.45 Aligned_cols=255 Identities=18% Similarity=0.234 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705 178 GLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK 257 (557)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~ 257 (557)
-=|..|..+++.|+..+|+-+|+.+++.+|.+.++|..| |.+....++-..|+..
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~L-------------------------G~~qaENE~E~~ai~A 341 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKL-------------------------GITQAENENEQNAISA 341 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHh-------------------------hhHhhhccchHHHHHH
Confidence 357899999999999999999999999999999999887 9999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH-------HHHhccchhHHHHHHHHHH
Q 008705 258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN-------VLYAKECFSALSYLAHRVF 330 (557)
Q Consensus 258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 330 (557)
++++++++|++..++..+|..|...|.-.+|..++.+.+...|........--+ -.........+..++-.+.
T Consensus 342 L~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa 421 (579)
T KOG1125|consen 342 LRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAA 421 (579)
T ss_pred HHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988753211000000 0000011223333444444
Q ss_pred hhCC--CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH
Q 008705 331 MTDK--YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW 408 (557)
Q Consensus 331 ~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (557)
...| .+|++...||.+|...|+|++|+.+|+.||..+|++...|..+|-.+....+.++|+..|++|+++.|...+++
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R 501 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR 501 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee
Confidence 4455 56777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHhHHhcCcHHH
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPND----------SRLWIAMAQCYETEQLHMLEE 459 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----------~~~~~~l~~~~~~~~~~~~~~ 459 (557)
++||.++..+|.|.+|..+|-.++.+.+.. ..+|..|-.++.. +++.+-
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~--~~~~D~ 560 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA--MNRSDL 560 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH--cCCchH
Confidence 777777777777777777777777665431 1355555555555 555553
No 47
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=8.3e-20 Score=194.27 Aligned_cols=433 Identities=12% Similarity=0.056 Sum_probs=322.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhcCCc--hhhHHHHHHHHhh--cccchHHHHHhhC-----CCCCch----------h
Q 008705 93 FYLLAKSYFDCREYRRAAHVLRDQTGRR--SVFLRCYALYLAG--EKRKEEEMIELEG-----PLGKSN----------A 153 (557)
Q Consensus 93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~--~~~l~~~~~~l~~--~~~~~~~~~~~~~-----~~~~~~----------~ 153 (557)
...+...+...|.+++|..+|+...... ..-...|...+.. ..+..+.+..+.. .+.... .
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 3445677888999999999999775321 0001111111111 1122222222111 111110 1
Q ss_pred hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC-CHHHHHHHHHhhhcHHHH------
Q 008705 154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW-NWNAWSELKSLCTSIDIL------ 226 (557)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~~~------ 226 (557)
..+.++.+.+.+.... ..|...|..+...+.+.|++++|+..|+++.+..+. +...+..+...+...+.+
T Consensus 170 k~g~~~~A~~lf~~m~---~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 170 KCGMLIDARRLFDEMP---ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred cCCCHHHHHHHHhcCC---CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 2344566666665543 357788999999999999999999999999875432 223343333332221111
Q ss_pred ----hhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-C
Q 008705 227 ----NSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP-Y 301 (557)
Q Consensus 227 ----~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~ 301 (557)
.......+......+...|.+.|+.++|.+.|+++. +.+...|..+...|.+.|++++|+.+|+++.+..- .
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 111222333344456889999999999999999874 45778899999999999999999999999977432 2
Q ss_pred CCCcHHHHHHHHHhccchhHHHHHHHHHHhhC-CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHH
Q 008705 302 RVDDMDMYSNVLYAKECFSALSYLAHRVFMTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHE 380 (557)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 380 (557)
+...+..+...+...+..+.+..+...+.+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~ 400 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAG 400 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHH
Confidence 33456667777888899999999888887765 56778899999999999999999999998754 356789999999
Q ss_pred HHhcCCchHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhHHhcCc
Q 008705 381 YVEMKNTPAAIDAYRRAVDI--NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--NDSRLWIAMAQCYETEQLHM 456 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~ 456 (557)
|...|+.++|++.|++.... .| +..++..+...+...|..++|..+|+.+.+..+ .+...|..+..++.+ .|+
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r--~G~ 477 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR--EGL 477 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh--cCC
Confidence 99999999999999998874 44 577788899999999999999999999986432 234678899999999 999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE 536 (557)
Q Consensus 457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 536 (557)
+++|.+.+++.- ..| +..+|..+...+...|+.+.|...+++.++ ..|++...|..++.+|.+.|++++|.
T Consensus 478 ~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-------~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 478 LDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG-------MGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-------CCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999998752 333 456799999999999999999999999887 78888889999999999999999999
Q ss_pred HHHHHHhccC
Q 008705 537 VYCTRLLDYT 546 (557)
Q Consensus 537 ~~~~~al~~~ 546 (557)
+.++.+.+..
T Consensus 549 ~v~~~m~~~g 558 (697)
T PLN03081 549 KVVETLKRKG 558 (697)
T ss_pred HHHHHHHHcC
Confidence 9999987653
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.90 E-value=4.8e-20 Score=182.73 Aligned_cols=298 Identities=11% Similarity=0.003 Sum_probs=205.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008705 180 YLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYE 259 (557)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 259 (557)
...|......|+++.|.+.+.++.+..|.....+. ..|.+....|+++.|...+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~l-------------------------laA~aa~~~g~~~~A~~~l~ 142 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLI-------------------------KAAEAAQQRGDEARANQHLE 142 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHH-------------------------HHHHHHHHCCCHHHHHHHHH
Confidence 44555555566666666666555555554332221 22555555566666666666
Q ss_pred HHHhcCCCCH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705 260 YLQGTFSFSN-YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE 338 (557)
Q Consensus 260 ~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (557)
++.+..|++. .+....+.++...|++++|...++++++..|+++.++..++.++...++++++..++....+....++.
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 6555555543 344444555566666666666666666666666555555566666666666555555555544333333
Q ss_pred HHH----HHHHHHhhhCchHHHHHHHHHHHhcCc----CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH--
Q 008705 339 SCC----IIGNYYSLKGQHEKSVVYFRRALKLDK----NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW-- 408 (557)
Q Consensus 339 ~~~----~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-- 408 (557)
... .........+..+++...+.++....| +++..+..++..+...|++++|++.++++++..|++....
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 221 122222344455556677888887777 5889999999999999999999999999999999887532
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhHHhcCcHHHHHHHHH--HHHhcCCChHHHHHHHHHH
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYR--RAANCNDSEAIALNQLAKL 484 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~la~~ 484 (557)
..........++.+.++..++++++..|+++ .....+|.++.. .|++++|.++|+ ++++..|+... +..+|.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~--~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~l 379 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK--HGEFIEAADAFKNVAACKEQLDAND-LAMAADA 379 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH--cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHH
Confidence 2233334446888999999999999999999 888999999999 999999999999 57778887665 5599999
Q ss_pred HHHcCCHHHHHHHHHHHHHHH
Q 008705 485 HHALGRDEEAAFYYKKDLERM 505 (557)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~~~ 505 (557)
+.+.|+.++|..++++++...
T Consensus 380 l~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999998743
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=9.9e-21 Score=194.55 Aligned_cols=265 Identities=13% Similarity=-0.013 Sum_probs=220.7
Q ss_pred ChhHHHHHHHHHHhc---CChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH----
Q 008705 175 DPFGLYLYGIVLKDK---GNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE---- 247 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~---- 247 (557)
++..+|+.|...... +.+++|+..|+++++.+|.+..+|..+ |.++..
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~L-------------------------a~~~~~~~~~ 311 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCAL-------------------------AECYLSMAQM 311 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHH-------------------------HHHHHHHHHc
Confidence 455688888766544 457899999999999999999988777 444332
Q ss_pred -----HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705 248 -----LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL 322 (557)
Q Consensus 248 -----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 322 (557)
.+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|+
T Consensus 312 g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--------------------- 370 (553)
T PRK12370 312 GIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI--------------------- 370 (553)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------------
Confidence 345789999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC-
Q 008705 323 SYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN- 401 (557)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 401 (557)
++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++...
T Consensus 371 -------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 371 -------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence 466778899999999999999999999999999988777777777888999999999999998875
Q ss_pred CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 402 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
|+++.++..+|.++..+|++++|...+.+.....|.+...+..++..|.. .| ++|...+++.++.....+.-....
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g--~~a~~~l~~ll~~~~~~~~~~~~~ 513 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ--NS--ERALPTIREFLESEQRIDNNPGLL 513 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc--cH--HHHHHHHHHHHHHhhHhhcCchHH
Confidence 77888899999999999999999999999888888888888899988887 77 477777777666543333333347
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 008705 482 AKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~ 503 (557)
+.++.-.|+.+.+..+ +++.+
T Consensus 514 ~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 514 PLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHhhhHHHHHH-HHhhc
Confidence 8888888888888777 66655
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=4.6e-21 Score=197.05 Aligned_cols=252 Identities=13% Similarity=-0.010 Sum_probs=216.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705 249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR---------EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 319 (557)
+.+++|+..|+++++.+|+++.++..+|.++...+ ++++|+..++++++.+|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~------------------ 336 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN------------------ 336 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC------------------
Confidence 45789999999999999999999998888876443 367777777777777775
Q ss_pred hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++
T Consensus 337 ----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 337 ----------------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred ----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5778888999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
++|.++..+..++.++...|++++|+..+++++... |+++..+..+|.++.. .|++++|...+.++....|....+.
T Consensus 401 l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~--~G~~~eA~~~~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 401 LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL--KGKHELARKLTKEISTQEITGLIAV 478 (553)
T ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh--CCCHHHHHHHHHHhhhccchhHHHH
Confidence 999998887777878888999999999999999875 7889999999999999 9999999999999999999988899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
..++..|...| ++|...+++.++.... .+.+ ...++.++.-.|+.+.|..+ +++.+.+
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~----~~~~---~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLESEQR----IDNN---PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHHhhH----hhcC---chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 99999999988 4888888887763221 2222 23378888889999988888 7776653
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=1.2e-20 Score=167.34 Aligned_cols=304 Identities=14% Similarity=0.100 Sum_probs=267.7
Q ss_pred chhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcC
Q 008705 151 SNAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLN 230 (557)
Q Consensus 151 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~ 230 (557)
....+..+..++.........+|++-.++|.+|.+|...|+-.-|+.-+.+++++-|+...+....
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR-------------- 112 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR-------------- 112 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh--------------
Confidence 335667788888888888999999999999999999999999999999999999999988877655
Q ss_pred CChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH---HH------------HHHHHHHHHhcccHHHHHHHHHHH
Q 008705 231 LNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSN---YI------------QAQIAKAQYSLREFEQVEVIFEEL 295 (557)
Q Consensus 231 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~------------~~~la~~~~~~g~~~~A~~~~~~~ 295 (557)
|.+++++|++++|..-|+.++..+|.+. ++ +......++..|+...|+....++
T Consensus 113 -----------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 113 -----------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred -----------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 9999999999999999999999988532 22 234445566779999999999999
Q ss_pred HHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHH
Q 008705 296 LRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT 375 (557)
Q Consensus 296 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 375 (557)
+++.|-+.......+.++...+....++.-.+.+.++..++.+.++.++.+++..|+.+.++...+.+++++|+.-..+.
T Consensus 182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754322
Q ss_pred ------------HHhHHHHhcCCchHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705 376 ------------LMGHEYVEMKNTPAAIDAYRRAVDINPRDY----RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439 (557)
Q Consensus 376 ------------~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 439 (557)
.-+....+.++|.++++..++.++.+|..+ .....+..|+..-+++.+|+..+.+++..+|++.
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 123445678899999999999999999843 3455678899999999999999999999999999
Q ss_pred HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
.++...+.+|.. ...|+.|+..|++|.+.++++..+...+
T Consensus 342 ~~l~dRAeA~l~--dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 342 QVLCDRAEAYLG--DEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999 9999999999999999999987765544
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=5.5e-20 Score=182.30 Aligned_cols=296 Identities=12% Similarity=-0.054 Sum_probs=252.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHhccc
Q 008705 240 FLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV-DDMDMYSNVLYAKEC 318 (557)
Q Consensus 240 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~ 318 (557)
..|......|+++.|.+.+.++.+..|+....+...|.+....|+++.|..++.++.+..|.+. ......+.++...++
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 4588899999999999999999999998888888999999999999999999999999998875 345557999999999
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHH----HHHhHHHHhcCCchHHHHHH
Q 008705 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW----TLMGHEYVEMKNTPAAIDAY 394 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~l~~~~~~~~~~~~A~~~~ 394 (557)
++.+...++.+....|.++.++..++.++...|++++|...+.+..+....+.... ..........+..+++...+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999998754433322 12222234445556667788
Q ss_pred HHHHhhCC----CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH--HHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705 395 RRAVDINP----RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW--IAMAQCYETEQLHMLEEAIKCYRRAA 468 (557)
Q Consensus 395 ~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~--~~l~~~~~~~~~~~~~~A~~~~~~al 468 (557)
.++....| +++..+..++..+...|++++|+..++++++..|++.... ......... .++.+.+++.+++++
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~--~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK--PEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC--CCChHHHHHHHHHHH
Confidence 88888777 5899999999999999999999999999999999987532 223333444 678899999999999
Q ss_pred hcCCChH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 469 NCNDSEA--IALNQLAKLHHALGRDEEAAFYYK--KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 469 ~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
+..|+++ .++..+|+++.+.|++++|.++|+ .+++ ..|+... +..+|.++.+.|+.++|.++|++++.
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999 899999999999999999999999 4666 5676555 66999999999999999999999865
Q ss_pred c
Q 008705 545 Y 545 (557)
Q Consensus 545 ~ 545 (557)
.
T Consensus 399 ~ 399 (409)
T TIGR00540 399 L 399 (409)
T ss_pred H
Confidence 4
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.89 E-value=3.3e-21 Score=181.83 Aligned_cols=237 Identities=16% Similarity=0.104 Sum_probs=190.2
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHH
Q 008705 282 LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFR 361 (557)
Q Consensus 282 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 361 (557)
.+..+.++..+.+++...|-++ +..+..++.+|.+|...|++++|+..|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~------------------------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~ 88 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTD------------------------------EERAQLHYERGVLYDSLGLRALARNDFS 88 (296)
T ss_pred chHHHHHHHHHHHHHccccCCc------------------------------HhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3566778888888886544321 2346789999999999999999999999
Q ss_pred HHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 008705 362 RALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL 441 (557)
Q Consensus 362 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 441 (557)
++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+|.++|.++...|++++|+..|+++++.+|+++..
T Consensus 89 ~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 168 (296)
T PRK11189 89 QALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR 168 (296)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 008705 442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 521 (557)
Q Consensus 442 ~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 521 (557)
... ..+... .+++++|+..|.++....+... +. .+.++...|+..++ ..++.+.+.+.......|..+++|+.
T Consensus 169 ~~~-~~l~~~--~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~ 241 (296)
T PRK11189 169 ALW-LYLAES--KLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFY 241 (296)
T ss_pred HHH-HHHHHc--cCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 222 223445 7899999999988775543322 22 35666667777554 34444443221111245677899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 008705 522 LATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHLK 555 (557)
Q Consensus 522 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~~ 555 (557)
+|.++...|++++|+.+|+++++.+|++..+...
T Consensus 242 Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 242 LAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 9999999999999999999999999988877654
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=7.6e-22 Score=173.73 Aligned_cols=249 Identities=17% Similarity=0.196 Sum_probs=225.9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
+|.-...+|.||+++|.+.+|.+.++..++.+| .++.+..++.+|.+..+...|+..|.+.++..|.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~----------- 289 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD----------- 289 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-----------
Confidence 444455689999999999999999999999887 67788999999999999999999999999988874
Q ss_pred HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHH
Q 008705 314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393 (557)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 393 (557)
....+.++.++..+++.++|.++|+.+++.+|.+.++...+|..|+-.++++-|+.+
T Consensus 290 -----------------------VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 290 -----------------------VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred -----------------------hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 445667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470 (557)
Q Consensus 394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~ 470 (557)
|++.+++.-.+++.+.++|.++...++++-++..|++++....+ -.++|+++|.+... .|++.-|.++|+-++..
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~--iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT--IGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe--ccchHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999987542 36799999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH
Q 008705 471 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 526 (557)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 526 (557)
++++.+++.+||.+-.+.|+.++|..++..+-. ..|...+..++++.+-
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-------~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKS-------VMPDMAEVTTNLQFMS 473 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-------hCccccccccceeEEe
Confidence 999999999999999999999999999999888 6788777777766443
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-19 Score=173.43 Aligned_cols=304 Identities=16% Similarity=0.048 Sum_probs=258.3
Q ss_pred CCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDK-----------GNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFL 241 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 241 (557)
-..+.++..+|.+|-.+ ....++++.++++++.+|.|+.+.+.+
T Consensus 430 ~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~l------------------------- 484 (799)
T KOG4162|consen 430 HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYL------------------------- 484 (799)
T ss_pred hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH-------------------------
Confidence 45678888888888543 246789999999999999999776544
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 242 ASAYQELRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
+.-|...++.+.|+....++++. ..+++..|..+|.++...+++.+|+.+.+.++...|.|...++....+-...++.+
T Consensus 485 alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 485 ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHH
Confidence 99999999999999999999999 55689999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHHHhhCCCChhHHHHH---------HHHHhhhCchHHHHHHHHHHHhc--------C-----c------CC--
Q 008705 321 ALSYLAHRVFMTDKYRPESCCII---------GNYYSLKGQHEKSVVYFRRALKL--------D-----K------NY-- 370 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~--------~-----p------~~-- 370 (557)
++...+...+......+.+...+ +......++..+|+...+++... + | ..
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS 644 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence 88888877766555333332222 22233344555666665555432 1 1 11
Q ss_pred -----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 008705 371 -----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM 445 (557)
Q Consensus 371 -----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 445 (557)
...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++++|...|..++.++|+++.+...+
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 245788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhcCcHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 446 AQCYETEQLHMLEEAIK--CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 446 ~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
|.++.. .|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|..+++
T Consensus 725 a~~lle--~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLE--LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHH--hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999 998888888 99999999999999999999999999999999999999998
No 56
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.87 E-value=7.5e-18 Score=181.29 Aligned_cols=363 Identities=9% Similarity=-0.005 Sum_probs=288.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHH--HHHHHHhhh-------cHHHHhhcCCChhHHHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNA--WSELKSLCT-------SIDILNSLNLNNHWMKDYFLAS 243 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~la~ 243 (557)
++.+.....+ ..+.+.|++++|+++|+.+.+.+...+.. +..+...+. ....+..+..+ +...+-.+-.
T Consensus 368 ~~~~~~~~~y-~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~p-d~~Tyn~LL~ 445 (1060)
T PLN03218 368 RKSPEYIDAY-NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNP-TLSTFNMLMS 445 (1060)
T ss_pred CCchHHHHHH-HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 3334433333 45568899999999999988766433322 222222221 11122223333 3333444567
Q ss_pred HHHHHhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCCcHHHHHHHHHhccchhH
Q 008705 244 AYQELRMHKESLTKYEYLQGTF-SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY-RVDDMDMYSNVLYAKECFSA 321 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~ 321 (557)
.+...|++++|..+++.+.+.. ..+...+..+...|.+.|++++|..+|+++.+.... +...+..+...+...++.++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 7889999999999999998754 346788999999999999999999999999986532 55677888888999999999
Q ss_pred HHHHHHHHHhhC-CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc----CcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 322 LSYLAHRVFMTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL----DKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
+..++..+.... ..+..+|..+...|.+.|++++|...|.++... .|+ ...|..+...|.+.|++++|.+.|+.
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998876543 346788999999999999999999999999763 343 67888899999999999999999999
Q ss_pred HHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CC
Q 008705 397 AVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DS 473 (557)
Q Consensus 397 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~ 473 (557)
+.+.+ +.+...|..+...|.+.|++++|+.+|.++.+.. ..+...|..+...+.+ .|++++|.++++++.+.. +.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k--~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--AGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCC
Confidence 99876 4577899999999999999999999999998763 2246789999999999 999999999999998864 34
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 474 EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
+..++..+...|.+.|++++|...|+++.+. +..| +...|..+...|.+.|++++|.++|+++....
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-----KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 5778999999999999999999999988762 1234 56789999999999999999999999987654
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.87 E-value=1.5e-18 Score=171.09 Aligned_cols=294 Identities=11% Similarity=0.028 Sum_probs=241.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHhcccHHHHHHHHHHHHHhCCCCCCcHH-HHHHHHHhc
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQI-AKAQYSLREFEQVEVIFEELLRNDPYRVDDMD-MYSNVLYAK 316 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-~~~~~~~~~ 316 (557)
+..|......|++++|.+...+..+..+ ++.+++.+ +......|+++.|..++.++.+.+|++..... ..+.++...
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 3458888888999999988887655433 34444444 66669999999999999999999998754433 448889999
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHH--------HHHHhHHHHhcCCch
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSA--------WTLMGHEYVEMKNTP 388 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------~~~l~~~~~~~~~~~ 388 (557)
++++.+...++.+....|.++.+...++.+|...|++++|+..+.+..+..+.+... +..+........+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999999999999999988876654332 222222222333444
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468 (557)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al 468 (557)
.....++..-...|+++.+...++..+...|+.++|...++++++ .|.++......+.+ . .++++++++..++.+
T Consensus 247 ~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~--~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--K--TNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--c--CCChHHHHHHHHHHH
Confidence 555555555556677999999999999999999999999999999 45566655555543 4 689999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
+..|+++..+..+|.++...|++++|.++|+++++ ..|+.. .+..++.++.+.|+.++|..+|++++.+.
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-------~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-------QRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999 677765 46689999999999999999999998864
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=1.2e-19 Score=152.98 Aligned_cols=206 Identities=19% Similarity=0.219 Sum_probs=191.5
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 416 (557)
..+...+|.-|...|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++|+.++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 417 MMHMPLYALHYFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
.+|++++|...|++++.. .+..+..|.++|.|..+ .|+++.|...|++++..+|+.+.....++..++..|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~--~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK--AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh--cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999974 35567899999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
..++++... ..+...+.+....++-...|+-+.|..+=.+.....|...+
T Consensus 193 r~~~~~~~~-------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 193 RLYLERYQQ-------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHh-------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 999999888 45677888888889999999999999998888888766544
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.86 E-value=2.1e-18 Score=170.05 Aligned_cols=293 Identities=12% Similarity=0.059 Sum_probs=186.2
Q ss_pred chhHHHHHHHHhhhhcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705 155 NRELISLERELSTSWKNGTVDPFGLYLY-GIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN 233 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~ 233 (557)
.+++..+.+.+....+. .++|..++++ +....+.|+++.|..+|.++.+.+|++..+..
T Consensus 97 eGd~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~------------------- 156 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVE------------------- 156 (398)
T ss_pred CCCHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHH-------------------
Confidence 34555555555443322 2234444444 34446666666666666666666666532211
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
...+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.+.+....+.
T Consensus 157 -----l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~--- 228 (398)
T PRK10747 157 -----ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE--- 228 (398)
T ss_pred -----HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH---
Confidence 112556666666666666666666666666666666666666666666666666666665543222111000
Q ss_pred HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHH
Q 008705 314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393 (557)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 393 (557)
..++..+........+-+.....++......|+++.++..++..+...|+.++|...
T Consensus 229 -----------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 229 -----------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred -----------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 001111111111222334444444444444567888888888888888888888888
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
++++++. +.++......+.+ ..+++++++..+++.++.+|+++..+..+|.++.. .+++++|...|+++++..|+
T Consensus 286 L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~--~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 286 ILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK--HGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCC
Confidence 8888884 4455544444443 34888888888888888888888888888888888 88888888888888888887
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 474 EAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
+.. +..++.++.+.|+.++|..+|++++..
T Consensus 361 ~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 361 AYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 644 557888888888888888888888763
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.86 E-value=2e-19 Score=165.56 Aligned_cols=202 Identities=20% Similarity=0.200 Sum_probs=189.4
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY 415 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 415 (557)
.+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705 416 EMMHMPLYALHYFRKSVFLQ--PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 493 (557)
...|++++|+..|++++... +.....+..+|.++.. .|++++|...+.+++...|.++.++..+|.++...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK--AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999854 4567789999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
|..++++++. ..|..+..+..++.++...|+.++|..+.+.+....
T Consensus 188 A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQ-------TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 9999999998 457778888899999999999999999988887654
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=3.3e-19 Score=168.22 Aligned_cols=237 Identities=17% Similarity=0.077 Sum_probs=187.6
Q ss_pred HhhhHHHHHHHHHHHhcCC---C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705 248 LRMHKESLTKYEYLQGTFS---F-SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS 323 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 323 (557)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------------- 96 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------------- 96 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------------
Confidence 3567888899999986433 3 4677999999999999999999999999998886
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705 324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403 (557)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 403 (557)
++.+++.+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|++.|+++++.+|+
T Consensus 97 ------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 97 ------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred ------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHH--HHHHHH----HHhcCCChHHH
Q 008705 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA--IKCYRR----AANCNDSEAIA 477 (557)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A--~~~~~~----al~~~p~~~~~ 477 (557)
++.... ...+....+++++|+..|.+++...+.+. |. .+.+... .|+..++ +..+.+ ..++.|..+++
T Consensus 165 ~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 165 DPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred CHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 874222 12234567889999999988775543222 22 3455555 6665433 333332 23455667789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC-cchHHHHHHHHHHHHHcCC
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG-PNMVEALIFLATHCRAHGR 531 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 531 (557)
|+.+|.++...|++++|+.+|+++++ .+ ++.++..+.+..+....+.
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~-------~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALA-------NNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 45 4777777776666655444
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.4e-20 Score=166.05 Aligned_cols=271 Identities=15% Similarity=0.111 Sum_probs=239.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
+.-....|..+++..+|.+|+..|..|+..+|++...|..- +.+++..|++++|.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nR-------------------------Aa~~m~~~~~~~a~ 103 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNR-------------------------AATLMMLGRFEEAL 103 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchh-------------------------HHHHHHHHhHhhcc
Confidence 44556678888999999999999999999999998777544 88999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH------------HhC------CCCCCcHHHHHHHHHhcc
Q 008705 256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL------------RND------PYRVDDMDMYSNVLYAKE 317 (557)
Q Consensus 256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------------~~~------p~~~~~~~~~~~~~~~~~ 317 (557)
-..++.+.+.|..+......++|+...++..+|...++..- .+- |....+...-+.++...+
T Consensus 104 ~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~ 183 (486)
T KOG0550|consen 104 GDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLG 183 (486)
T ss_pred cchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcc
Confidence 99999999999999999999999999999888886665221 111 222334566678888899
Q ss_pred chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------------HHHHHHhHHHHhcC
Q 008705 318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------------SAWTLMGHEYVEMK 385 (557)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~~~ 385 (557)
+...+......+++.++.+.++.+..|.+++..++.+.|+.+|++++.++|+.. ..|...|.-.++.|
T Consensus 184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 999999999999999999999999999999999999999999999999999864 44778899999999
Q ss_pred CchHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHH
Q 008705 386 NTPAAIDAYRRAVDINPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 461 (557)
Q Consensus 386 ~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~ 461 (557)
++..|.++|..+|.++|++ ...|.+++.+...+|+..+|+..++.+++++|....++...|.|+.. ++++++|+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~--le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA--LEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999987 55688999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCC
Q 008705 462 KCYRRAANCNDS 473 (557)
Q Consensus 462 ~~~~~al~~~p~ 473 (557)
+.|+++++...+
T Consensus 342 ~d~~~a~q~~~s 353 (486)
T KOG0550|consen 342 EDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHhhccc
Confidence 999999987655
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.86 E-value=1.9e-17 Score=159.10 Aligned_cols=429 Identities=11% Similarity=0.050 Sum_probs=251.5
Q ss_pred chhhHHHHHHHhhhhhhHHHHHHHHhhhcCCc-----hhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHH
Q 008705 89 EDSDFYLLAKSYFDCREYRRAAHVLRDQTGRR-----SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLER 163 (557)
Q Consensus 89 ~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (557)
.|.+.|.-+.-.|..|+|.+-+++.+.+++.. ...+........|. .+++..
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~-----------------------~~ea~~ 62 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK-----------------------KEEAYE 62 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc-----------------------hHHHHH
Confidence 46777877888999999999999888776522 22222233333332 223333
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhc--------C-CChh
Q 008705 164 ELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSL--------N-LNNH 234 (557)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l--------~-~~~~ 234 (557)
.+.....+++.+..+|..+|.++...++|++|+++|+.|+..+|+|...|..++-+...+..+... . .+..
T Consensus 63 ~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 63 LVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 344455678999999999999999999999999999999999999999999985444433332211 1 1122
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcH
Q 008705 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTF---SFS-----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM 306 (557)
Q Consensus 235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 306 (557)
-..++..+..+...|++..|..+.+...+.. |.. ..........+...|.+++|.+.+...-...-+.....
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~ 222 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh
Confidence 2222223444555555555555444443322 211 11223333344444444444444433332222222333
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHH-HHHHHHHhcCcCCHHHHHHHhHH-----
Q 008705 307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSV-VYFRRALKLDKNYLSAWTLMGHE----- 380 (557)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~----- 380 (557)
...+.++...++.+++..++..++..+|++...+..+-.++....+--+++ ..|...-+..|..... ..++..
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p-~Rlplsvl~~e 301 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP-RRLPLSVLNGE 301 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc-hhccHHHhCcc
Confidence 444445555555555555555555555555555544444443112222222 3333332222221100 000000
Q ss_pred --------H----Hhc-------------CCchHHHHHHHHHHh-----h------C--------CCC--hHHHHHHHHH
Q 008705 381 --------Y----VEM-------------KNTPAAIDAYRRAVD-----I------N--------PRD--YRAWYGLGQA 414 (557)
Q Consensus 381 --------~----~~~-------------~~~~~A~~~~~~al~-----~------~--------p~~--~~~~~~l~~~ 414 (557)
+ ++. .+... ....++.+. + + |.. ...++.+++-
T Consensus 302 el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred hhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 0 000 01010 001111111 0 0 111 2345678899
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
+...|+++.|..+.+.|+...|+-++.+...|.++.. .|.+++|...+..+.+++..+..+-..-|....+.++.++|
T Consensus 381 ~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH--~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH--AGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh--cCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHH
Confidence 9999999999999999999999999999999999999 99999999999999999877776666889999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchH-HHHH--HHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 495 AFYYKKDLERMEAEEREGPNMV-EALI--FLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~-~~~~--~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
.+...+.-+.-. ....+-... -.|+ .-|..|.++|++..|+.-|..+-++
T Consensus 459 ~~~~skFTr~~~-~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 459 EEVLSKFTREGF-GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHhhhccc-chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 988877665100 000011111 1233 3478899999999998877766543
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=4.1e-20 Score=175.48 Aligned_cols=254 Identities=13% Similarity=0.071 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC 318 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 318 (557)
|..|..+++.|+..+|.-.|+.++..+|.+.++|..+|.++...++-..|+..++++++++|++.+++..++..+...+.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhHHHHHHHHHHhhCCCChhHHH-------HHHHHHhhhCchHHHHHHHHHHHhcCc--CCHHHHHHHhHHHHhcCCchH
Q 008705 319 FSALSYLAHRVFMTDKYRPESCC-------IIGNYYSLKGQHEKSVVYFRRALKLDK--NYLSAWTLMGHEYVEMKNTPA 389 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~-------~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~ 389 (557)
...+...+...+...|.....-. ....-......+..-.+.|-.+....| .++++...||.+|.-.|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 88888888777666543211100 000011122234455566777777777 678888888888888888888
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
|+.+|+.|+...|+|...|..||.++..-.+.++|+..|++|+++.|...++++++|.+++. +|.|.+|+++|-.|+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN--lG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN--LGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh--hhhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888 8888888888888887
Q ss_pred cCCCh----------HHHHHHHHHHHHHcCCHHHH
Q 008705 470 CNDSE----------AIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 470 ~~p~~----------~~~~~~la~~~~~~g~~~~A 494 (557)
+.+.. ..+|..|=.++..+++.+-+
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 75431 13555555555555555533
No 65
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=3.1e-17 Score=178.89 Aligned_cols=429 Identities=13% Similarity=0.088 Sum_probs=310.3
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhhcC----Cchh-hHHHHHHHHhhcccchHHHHHhhCC-----CC-C---------c
Q 008705 92 DFYLLAKSYFDCREYRRAAHVLRDQTG----RRSV-FLRCYALYLAGEKRKEEEMIELEGP-----LG-K---------S 151 (557)
Q Consensus 92 ~~~~la~~~~~~~~y~~A~~~l~~~~~----~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~-----~~-~---------~ 151 (557)
..-.+-..|.+.|++++|..+|++... ++.. |......+ +..+..+.+.++... +. . .
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~--~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~ 332 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC--ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM 332 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHH
Confidence 344567889999999999999998743 2211 11111111 112222222222111 10 0 0
Q ss_pred hhhchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcc--CCCCHHHHHHHHHhhhcHHHH---
Q 008705 152 NAVNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNS--YPWNWNAWSELKSLCTSIDIL--- 226 (557)
Q Consensus 152 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~--- 226 (557)
....+.+..+.+-++.+. ..|...|..+...|.+.|++++|+.+|+++.+. .|+... +..+...+...+.+
T Consensus 333 y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACACLGDLDVG 408 (857)
T ss_pred HHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHH
Confidence 112345566666666543 456778999999999999999999999988654 355433 33332222221111
Q ss_pred -------hhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008705 227 -------NSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND 299 (557)
Q Consensus 227 -------~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 299 (557)
..............+...|.+.|+.++|.+.|+++.+ .+...|..+...+...|++++|+..|++++...
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 1122333444444567888999999999999988754 345678888888999999999999999988654
Q ss_pred CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC-CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHh
Q 008705 300 PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG 378 (557)
Q Consensus 300 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 378 (557)
+.+...+..+...+...+..+....+...++... ..+..+...+...|.+.|+.++|...|+.. +.+..+|..+.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI 561 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILL 561 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHH
Confidence 4344444555555666777777777766665543 335556677889999999999999999886 56788999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhHHhc
Q 008705 379 HEYVEMKNTPAAIDAYRRAVDI--NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--NDSRLWIAMAQCYETEQL 454 (557)
Q Consensus 379 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~ 454 (557)
..|...|+.++|++.|++..+. .| +..++..+...+.+.|+.++|..+|+.+.+..+ .+...|..+..++.+ .
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r--~ 638 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR--A 638 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh--C
Confidence 9999999999999999998874 45 455677777889999999999999999884432 245788999999999 9
Q ss_pred CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705 455 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE 534 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 534 (557)
|++++|.+.+++. ...|+ +.+|..|-..+...|+.+.|....+++++ ..|+++..+..++.+|...|++++
T Consensus 639 G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~-------l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 639 GKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFE-------LDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-------hCCCCcchHHHHHHHHHHCCChHH
Confidence 9999999999986 34554 66788888888889999999999999988 789999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 008705 535 AEVYCTRLLDY 545 (557)
Q Consensus 535 A~~~~~~al~~ 545 (557)
|.+..+.+.+.
T Consensus 710 a~~vr~~M~~~ 720 (857)
T PLN03077 710 VARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHc
Confidence 99999888654
No 66
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=2.3e-17 Score=175.72 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=245.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
.|..++..+...|.+.|++++|.++|+++.. .+..+|.. +...|.+.|++++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~-------------------------li~~y~~~g~~~e 308 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNS-------------------------MLAGYALHGYSEE 308 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHH-------------------------HHHHHHhCCCHHH
Confidence 3455566666777777777777777776543 23344443 3888999999999
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705 254 SLTKYEYLQGTF-SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND-PYRVDDMDMYSNVLYAKECFSALSYLAHRVFM 331 (557)
Q Consensus 254 A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (557)
|+..|+++.... ..+...+..+..++...|++++|..++..+++.. +.+......+...+...|+.+++..++..+..
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 999999997642 3366788999999999999999999999999876 55677888899999999999999999988654
Q ss_pred hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC--CChHHH
Q 008705 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP--RDYRAW 408 (557)
Q Consensus 332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~ 408 (557)
.+..+|..+...|...|+.++|++.|++..+.. ..+...+..+...+...|..++|.++|+...+..+ .+...|
T Consensus 389 ---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 ---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred ---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 367789999999999999999999999988753 22456788888999999999999999999986432 245678
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
..+..++.+.|++++|.+.++++- ..| +..+|..+...+.. .|+++.|...+++.+.+.|++...|..++.+|.+.
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~--~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRI--HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH--cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 899999999999999999998752 333 56789999999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 008705 489 GRDEEAAFYYKKDLE 503 (557)
Q Consensus 489 g~~~~A~~~~~~al~ 503 (557)
|++++|.+.++...+
T Consensus 542 G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 542 GRQAEAAKVVETLKR 556 (697)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998876
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=7.1e-18 Score=148.92 Aligned_cols=296 Identities=14% Similarity=0.172 Sum_probs=246.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY 258 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 258 (557)
-|..|.-+.-.++.++|++.|..+++.+|...++...| |..+...|..+.|+.+-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL-------------------------GnLfRsRGEvDRAIRiH 92 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL-------------------------GNLFRSRGEVDRAIRIH 92 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH-------------------------HHHHHhcchHHHHHHHH
Confidence 46778888889999999999999999999888877666 99999999999999988
Q ss_pred HHHHhcCCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705 259 EYLQGTFSF-----SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333 (557)
Q Consensus 259 ~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (557)
+.+++. |+ ...++..+|.-|...|-++.|...|..+.+.......+...+..+|....++++++..+.+.....
T Consensus 93 Q~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 93 QTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 887653 43 245678899999999999999999999988777777888899999999999999999999888887
Q ss_pred CCC-----hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-hHH
Q 008705 334 KYR-----PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-YRA 407 (557)
Q Consensus 334 ~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~ 407 (557)
+.. +..+|.++..+....++++|+..+.+|++.+|++..+-..+|.++...|+++.|++.++.+++.+|.. +.+
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 653 45688999999999999999999999999999999999999999999999999999999999999976 667
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH- 486 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~- 486 (557)
.-.|..+|..+|+.++.+..+.++.+..+.. .+...++..-.. ..-.+.|...+.+-+...|+--..+..+..-..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~--~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIEL--QEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHH--hhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 7889999999999999999999999988764 445556666666 667788999888888888875444433332222
Q ss_pred -HcCCHHHHHHHHHHHHH
Q 008705 487 -ALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 487 -~~g~~~~A~~~~~~al~ 503 (557)
..|...+.+..++..+.
T Consensus 329 aeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 329 AEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccchhhhHHHHHHHHH
Confidence 23445666666666654
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.84 E-value=3.5e-17 Score=157.36 Aligned_cols=350 Identities=15% Similarity=0.118 Sum_probs=260.2
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHH
Q 008705 163 RELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLA 242 (557)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la 242 (557)
+.++.+++..|..++.+-+.|..+...|+.++|......+++.++.+.-+|..+ |
T Consensus 28 K~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~-------------------------g 82 (700)
T KOG1156|consen 28 KLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL-------------------------G 82 (700)
T ss_pred HHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH-------------------------H
Confidence 335556667899999999999999999999999999999999999999999877 9
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705 243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL 322 (557)
Q Consensus 243 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 322 (557)
.++....+|++|+++|+.++...|++..++..++....++++++-....-.+.++..|.....|..++......+.+..+
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhCC--CC------hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705 323 SYLAHRVFMTDK--YR------PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY 394 (557)
Q Consensus 323 ~~~~~~~~~~~~--~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 394 (557)
..+......... .+ .+............|..++|++.+..--..--+........|.+++.++++++|+..|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 888777665542 12 2233445566677788888887776543322233444566889999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCH--------------------------------HH
Q 008705 395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYAL-HYFRKSVFLQPNDS--------------------------------RL 441 (557)
Q Consensus 395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~~~--------------------------------~~ 441 (557)
+..+..+|++...+..+-.++..-.+--+++ ..|...-+..|... .+
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 9999999999888887777775222233333 55554443332210 00
Q ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHHh-------cC------------CCh--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 442 WIAMAQCYETEQLHMLEEAIKCYRRAAN-------CN------------DSE--AIALNQLAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 442 ~~~l~~~~~~~~~~~~~~A~~~~~~al~-------~~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (557)
...+-..| .+..+ ..+.++.+. -. |.. .+.++.++.-+...|+++.|..+++.
T Consensus 323 f~dl~SLy-----k~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 323 FKDLRSLY-----KDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred hhhhHHHH-----hchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00111111 11111 112222221 10 111 23556677778888888888888888
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 501 DLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 501 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
++. ..|..++.+...|+++...|++++|..++..+.++|-+|.
T Consensus 397 AId-------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 397 AID-------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred Hhc-------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 887 6788888888888888888888888888888888775543
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=3.1e-18 Score=144.58 Aligned_cols=207 Identities=17% Similarity=0.130 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705 269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS 348 (557)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 348 (557)
..+...+|..|...|++..|...++++++.+|+ ...+|..++.+|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----------------------------------~~~a~~~~A~~Yq 80 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----------------------------------YYLAHLVRAHYYQ 80 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------------------------cHHHHHHHHHHHH
Confidence 356889999999999999999999999999987 4677888999999
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCChHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--NPRDYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
..|+.+.|.+.|++|+.++|++.+++++.|..++..|++++|...|++|+.. .+..+.+|-++|.|..+.|+++.|..
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999973 45568899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705 427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (557)
+|+++++++|+.+.....++..++. .|++..|..++++.....+-....+.....+-...|+-+.|-++=.+...
T Consensus 161 ~l~raL~~dp~~~~~~l~~a~~~~~--~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--- 235 (250)
T COG3063 161 YLKRALELDPQFPPALLELARLHYK--AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--- 235 (250)
T ss_pred HHHHHHHhCcCCChHHHHHHHHHHh--cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH---
Confidence 9999999999999999999999999 99999999999999988888888888888999999998888877666665
Q ss_pred hhhcCCcchHHH
Q 008705 507 AEEREGPNMVEA 518 (557)
Q Consensus 507 ~~~~~~~~~~~~ 518 (557)
..|...+.
T Consensus 236 ----~fP~s~e~ 243 (250)
T COG3063 236 ----LFPYSEEY 243 (250)
T ss_pred ----hCCCcHHH
Confidence 56666554
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=2.8e-18 Score=157.83 Aligned_cols=200 Identities=20% Similarity=0.201 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705 268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY 347 (557)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 347 (557)
....+..+|.++...|++++|+..++++++.+|. ++.++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------------------------cHHHHHHHHHHH
Confidence 3567888888888889999999888888877765 345667788888
Q ss_pred hhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCChHHHH
Q 008705 348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN--PRDYRAWYGLGQAYEMMHMPLYAL 425 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~ 425 (557)
...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++... +.....+..+|.++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 888899999999999988888888888888999999999999999999888753 455677888899999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
..+.+++...|.++..+..+|.++.. .|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 156 KYLTRALQIDPQRPESLLELAELYYL--RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888899999988 99999999999999888888888888888999999999998888776654
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.83 E-value=2.2e-17 Score=161.49 Aligned_cols=252 Identities=19% Similarity=0.190 Sum_probs=206.0
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705 265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344 (557)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 344 (557)
.|.-..+...++..|...|+|+.|+..++.+++.--... | ...+.-......+|
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~-------------G-------------~~hl~va~~l~~~a 248 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS-------------G-------------LKHLVVASMLNILA 248 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc-------------C-------------ccCHHHHHHHHHHH
Confidence 455556666788888888888888888888887611000 0 00111122333599
Q ss_pred HHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC--------CChHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP--------RDYRAW 408 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~ 408 (557)
.+|...+++.+|+..|++|+.+ +|....++.++|..|...|++++|..++++|+++.. .-...+
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 9999999999999999999976 344566799999999999999999999999998642 225567
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcC-----C---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC--------C
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQ-----P---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN--------D 472 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~--------p 472 (557)
..++.++..++++++|+.++++++++. + .-+..+.++|.+|.. +|++++|.++|++++.+. +
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~--~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK--MGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 889999999999999999999998763 2 335688999999999 999999999999999863 2
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 473 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
.....++++|..|.+.+++.+|...|.++.......++..|+....+.+||.+|..+|++++|.++.++++.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 335688999999999999999999999999988666778889999999999999999999999999999984
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.82 E-value=3e-17 Score=164.41 Aligned_cols=227 Identities=17% Similarity=0.178 Sum_probs=200.8
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
++...+...+-+++..++.-+.++..+|.+|...-+...|.++|++|.++++.+..++-..+..|.+..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34455566677788899999999999999999999999999999999999999999999999999999999999999777
Q ss_pred HHhhCCCC--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 397 AVDINPRD--YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 397 al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
+-+..|.. ...|..+|..|...+++..|+..|+.+++.+|.+.+.|..+|.+|.. .|++..|++.|.++..++|.+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~--sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE--SGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh--cCceehHHHhhhhhHhcCcHh
Confidence 77766654 44577799999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
..+.+..|.+....|+|.+|+..+...+.............++.+..++..+.-.|-..+|..++++.++.
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999988554444444566788888888888888888888888887754
No 73
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=2e-16 Score=172.69 Aligned_cols=433 Identities=13% Similarity=0.045 Sum_probs=261.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhh--cccchHHHHHhhCCCC-----Cc-h---------hhc
Q 008705 93 FYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAG--EKRKEEEMIELEGPLG-----KS-N---------AVN 155 (557)
Q Consensus 93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~--~~~~~~~~~~~~~~~~-----~~-~---------~~~ 155 (557)
.-.|-..|.++|+++.|..+|+....++..- |...+.+ ..+..+++.++...+. .. . ...
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s---~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRRDCIS---WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCCCCcch---hHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 3455778999999999999999987654332 1222222 2334555544321111 00 0 011
Q ss_pred hhHHHHHHHHhhhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH-------Hh
Q 008705 156 RELISLERELSTSWK-NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI-------LN 227 (557)
Q Consensus 156 ~~l~~~~~~l~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~-------~~ 227 (557)
+.+..+.+-.....+ .-..|...+..+...|.+.|++++|.++|+++...++ ..|..+...+...+. +.
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~---~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA---VSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe---eeHHHHHHHHHhCCCHHHHHHHHH
Confidence 222223333322222 2355778888888899999999999999998765433 344444322221111 00
Q ss_pred h---cCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705 228 S---LNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTF-SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV 303 (557)
Q Consensus 228 ~---l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 303 (557)
. .....+......+-..+...|+.++|.+++..+.+.. ..+..++..+...|.+.|++++|...|+++.+ .+.
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~ 455 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDV 455 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCe
Confidence 0 1111111111112224444555555555555554432 12334445555555555555555555554432 223
Q ss_pred CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc-CCHHHHHHHhHHHH
Q 008705 304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK-NYLSAWTLMGHEYV 382 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 382 (557)
..|..+...+...++..++..+++.+....+.+..++..+-..+...|+.+.+...+..+++... .+......+...|.
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 34445555555555555555555555443333444444444555555555555555555544321 12334455668888
Q ss_pred hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhHHhcCcHHHH
Q 008705 383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEA 460 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A 460 (557)
+.|+.++|...|+.. +.+..+|..+...|...|+.++|+..|+++.+. .|+ ...+..+-..+.+ .|..++|
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~--~g~v~ea 608 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSR--SGMVTQG 608 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhh--cChHHHH
Confidence 999999999988876 557889999999999999999999999988764 344 4456666677888 8999999
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 008705 461 IKCYRRAANCND--SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVY 538 (557)
Q Consensus 461 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 538 (557)
..+|+...+..+ .+...+..+..++.+.|++++|.+.+++.- ..|+ +.+|..|-..+...|+.+.|...
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--------~~pd-~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--------ITPD-PAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--------CCCC-HHHHHHHHHHHHHcCChHHHHHH
Confidence 999998874322 235688889999999999999999888742 3443 56777777788889999999999
Q ss_pred HHHHhccCCCch
Q 008705 539 CTRLLDYTGPVS 550 (557)
Q Consensus 539 ~~~al~~~~~~~ 550 (557)
.+++++++|.+.
T Consensus 680 a~~l~~l~p~~~ 691 (857)
T PLN03077 680 AQHIFELDPNSV 691 (857)
T ss_pred HHHHHhhCCCCc
Confidence 999999987643
No 74
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=3.6e-18 Score=160.32 Aligned_cols=239 Identities=14% Similarity=0.069 Sum_probs=199.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC-chHHHHHHHH
Q 008705 283 REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG-QHEKSVVYFR 361 (557)
Q Consensus 283 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~ 361 (557)
++|.+|..+|+.++.... ..+.+..+..+++..+|.+..+|...+.++...| ++++++.++.
T Consensus 34 ~~~~~a~~~~ra~l~~~e-----------------~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYASDE-----------------RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHHcCC-----------------CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 566667767666665443 3345556666677777778889999999988888 6799999999
Q ss_pred HHHhcCcCCHHHHHHHhHHHHhcCCc--hHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705 362 RALKLDKNYLSAWTLMGHEYVEMKNT--PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439 (557)
Q Consensus 362 ~al~~~p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 439 (557)
++++.+|++..+|..++.++...|+. ++++.++.++++.+|++..+|...+.++...|++++|+.++.++++.+|.+.
T Consensus 97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 99999999999999999999888874 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHhc---CcH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhh
Q 008705 440 RLWIAMAQCYETEQL---HML----EEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 508 (557)
.+|...+.++.. . |.+ ++++.+..+++..+|++..+|..++.++.. .++..+|...+.+++.
T Consensus 177 sAW~~R~~vl~~--~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~----- 249 (320)
T PLN02789 177 SAWNQRYFVITR--SPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS----- 249 (320)
T ss_pred hHHHHHHHHHHh--ccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-----
Confidence 999999998876 6 323 578888899999999999999999999988 4566778888888877
Q ss_pred hcCCcchHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHhccCC
Q 008705 509 EREGPNMVEALIFLATHCRAHG------------------RFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 509 ~~~~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~ 547 (557)
..|..+.++..|+.++.... ..++|...+..+-+.+|
T Consensus 250 --~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 250 --KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred --ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 67888999999999998643 34678888887755443
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.5e-17 Score=144.61 Aligned_cols=262 Identities=16% Similarity=0.135 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-----cHHHHHHH
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD-----DMDMYSNV 312 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~ 312 (557)
.|+.|.-+.-..+.++|+..|..+++.+|...++...+|..+...|..+.|+.+-+.+++ .|+... +...++.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 456688888899999999999999999999999999999999999999999998777665 444322 22334444
Q ss_pred HHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----HHHHHHhHHHHhcCCc
Q 008705 313 LYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----SAWTLMGHEYVEMKNT 387 (557)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~ 387 (557)
+...|-++.+..++..+.........+...+..+|....+|++|+..-++..++.+... ..+..++..+....+.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 44445555555555555555555555555555555555555555555555555544432 1233344444445555
Q ss_pred hHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-SRLWIAMAQCYETEQLHMLEEAIKCYRR 466 (557)
Q Consensus 388 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 466 (557)
+.|+..+.++++.+|+..++-..+|.++...|+|+.|++.++.+++.+|.. +.+...+..||.. .|+.++.+..+.+
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~--lg~~~~~~~fL~~ 274 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ--LGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555544 3344555555555 5555555555555
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
+.+..+. +.+...++.+-....-.+.|..++.+-+.
T Consensus 275 ~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 275 AMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 5554433 22333344444444444555555544444
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.81 E-value=6.2e-17 Score=158.96 Aligned_cols=320 Identities=13% Similarity=-0.028 Sum_probs=234.8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705 172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH 251 (557)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~ 251 (557)
+|+.+..+..+|..+...|+.++|...+.++.+..|.+....... +..+.++...|++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----------------------~~~a~~~~~~g~~ 59 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERA----------------------HVEALSAWIAGDL 59 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHH----------------------HHHHHHHHHcCCH
Confidence 588999999999999999999999999999988888665433222 4458888899999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM 331 (557)
Q Consensus 252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (557)
++|...++++++.+|++..++.. +..+...|++..+.....+++... ..
T Consensus 60 ~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~------------------------------~~ 108 (355)
T cd05804 60 PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW------------------------------AP 108 (355)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc------------------------------Cc
Confidence 99999999999999998876665 666666665555554444444321 12
Q ss_pred hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh----HH
Q 008705 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY----RA 407 (557)
Q Consensus 332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~ 407 (557)
..|..+.....+|.++...|++++|+..++++++++|++..++..+|.++.+.|++++|+..+++++...|.++ ..
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 23445666778899999999999999999999999999999999999999999999999999999999887543 34
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC--HHHHHHH---HHHHhHHhcCcHHHHHHH--H-HHHHhcCCC--hHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPND--SRLWIAM---AQCYETEQLHMLEEAIKC--Y-RRAANCNDS--EAIA 477 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l---~~~~~~~~~~~~~~A~~~--~-~~al~~~p~--~~~~ 477 (557)
|..+|.++...|++++|+..|++++...|.. ....... ...+.. .|....+..+ . .......|. ....
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~~~w~~~~~~~~~~~~~~~~~~~ 266 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL--AGHVDVGDRWEDLADYAAWHFPDHGLAFN 266 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh--cCCCChHHHHHHHHHHHHhhcCcccchHH
Confidence 6689999999999999999999998776622 2111112 122222 3332222222 1 111111111 2233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAE--EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
....+.++...|+.++|...++......... .........+....|.++...|++++|.+.+..++.+.
T Consensus 267 ~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 267 DLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3468888899999999999998887643220 11223456777888999999999999999999998753
No 77
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.81 E-value=1.1e-17 Score=167.56 Aligned_cols=318 Identities=15% Similarity=0.080 Sum_probs=208.9
Q ss_pred cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCC
Q 008705 189 KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFS 268 (557)
Q Consensus 189 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 268 (557)
.++...|...|-++++++|....+|..| |..|....+...|.++|+++.++++.+
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~L-------------------------G~iYrd~~Dm~RA~kCf~KAFeLDatd 525 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFL-------------------------GQIYRDSDDMKRAKKCFDKAFELDATD 525 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 4457788888888888888888777655 777777777777778888888887777
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705 269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR--VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY 346 (557)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 346 (557)
..+....+..|....+++.|..+.-.+-+..|-. ...|...+-.+...++...+...++.++..+|.+...|..+|.+
T Consensus 526 aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeA 605 (1238)
T KOG1127|consen 526 AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEA 605 (1238)
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 7777777777777777777777755555555532 22334445555556677777777777777777777777777777
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC----------------------
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---------------------- 404 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------------- 404 (557)
|...|++..|++.|.++..++|.+..+.+..+.+...+|.|.+|+..+...+......
T Consensus 606 Y~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~g 685 (1238)
T KOG1127|consen 606 YPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITG 685 (1238)
T ss_pred HHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777666666666666666666666555444321111
Q ss_pred --------------------------------------------------------------------------------
Q 008705 405 -------------------------------------------------------------------------------- 404 (557)
Q Consensus 405 -------------------------------------------------------------------------------- 404 (557)
T Consensus 686 f~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~ 765 (1238)
T KOG1127|consen 686 FQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECG 765 (1238)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHh
Confidence
Q ss_pred ---------hHHHHHHHHHHHH--------hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 405 ---------YRAWYGLGQAYEM--------MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 405 ---------~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
+..|+++|..|.+ +.+...|+.++.+++++..++...|+.+|.+ .. .|++.-|..+|-+.
T Consensus 766 ~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg--~gnva~aQHCfIks 842 (1238)
T KOG1127|consen 766 IAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG--IGNVACAQHCFIKS 842 (1238)
T ss_pred hHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc--cchhhhhhhhhhhh
Confidence 2335555555443 1222356666666666666666666666665 33 46666666666666
Q ss_pred HhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 468 ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 468 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
+...|.....|.++|.++.+..+++.|...|.++.. .+|.+...|...+.+....|+.-++...|..
T Consensus 843 ~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS-------LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 843 RFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS-------LDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhccccchhheeccceeEEecccHHHhhHHHHhhhh-------cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666665 5666666666666666666666666666655
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-18 Score=157.05 Aligned_cols=261 Identities=17% Similarity=0.093 Sum_probs=227.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
.|..++...+|.+|+..|..+++..|++...|...+.++...|+|++|....++.++++|.........+++....++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999998887777776666655554
Q ss_pred HHHHHHHH---------HHhhC---------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHH
Q 008705 321 ALSYLAHR---------VFMTD---------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV 382 (557)
Q Consensus 321 ~~~~~~~~---------~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 382 (557)
++...++. +-... |-.......-+.++...|++++|...--..+++++.+.++++..|.++.
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc
Confidence 44433221 11111 1112334566888999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhCCCC------------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 008705 383 EMKNTPAAIDAYRRAVDINPRD------------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND----SRLWIAMA 446 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~ 446 (557)
..++.+.|+..|++++.++|+. ...|..-|.-.++.|++..|.+.|..++.++|++ +..|.+++
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 9999999999999999999987 3457778888999999999999999999999987 45788899
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.+... +|+..+|+...+.++.++|....++...|.++..++++++|++.|+++++
T Consensus 295 ~v~~r--Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 295 LVNIR--LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhhcc--cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 99999999999999999999999999999999999999999999999998
No 79
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.1e-14 Score=135.06 Aligned_cols=423 Identities=16% Similarity=0.138 Sum_probs=320.4
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCC
Q 008705 95 LLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTV 174 (557)
Q Consensus 95 ~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 174 (557)
.+|+--..++++.||..+++.++.....+..+...|...+. .|+.+..+..-..+....-|.
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em------------------knk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM------------------KNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH------------------hhhhHhHHHHHHHHHHHhcch
Confidence 34777778999999999999999877777777656555432 122333344444455555577
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh---c--------CCChhHHHHHHHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS---L--------NLNNHWMKDYFLAS 243 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~---l--------~~~~~~~~~~~la~ 243 (557)
-...||.+-..-...||...|.++|++=++..|+ ..+|.....+-.....++. + +.-..|+.+ +.
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wiky---ar 215 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKY---AR 215 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHH---HH
Confidence 7788999999999999999999999999999996 4678777776444433322 1 112344443 77
Q ss_pred HHHHHhhhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH---HHHhcc
Q 008705 244 AYQELRMHKESLTKYEYLQGTFSFSN---YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN---VLYAKE 317 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~ 317 (557)
.-.+.|+..-|...|+++++...++. .+....|..-..++.++.|..+|+-++..-|.+. +...+.. .--.-|
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r-aeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR-AEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHhc
Confidence 88889999999999999998766543 3445556666778899999999999999999762 2222222 222334
Q ss_pred chhHHH--------HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---------HHHHHHh-H
Q 008705 318 CFSALS--------YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---------SAWTLMG-H 379 (557)
Q Consensus 318 ~~~~~~--------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~-~ 379 (557)
+..... ..+...+..+|.+-++|+..-.+-...|+.+.-.+.|++|+..-|... ..|.+.+ .
T Consensus 295 d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 295 DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 443332 234667888999999999999999999999999999999998776532 2233332 2
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705 380 EYVEMKNTPAAIDAYRRAVDINPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 455 (557)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 455 (557)
.-+...+.+.+.+.|+.++++-|.. +..|...|+...++.+...|...+-.++...|.+- .+-....+-.+ ++
T Consensus 375 eEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElq--L~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQ--LR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHH--Hh
Confidence 2346789999999999999999865 77899999999999999999999999999999863 44445555666 89
Q ss_pred cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHH-HHHHHHHHHHHcCCHHH
Q 008705 456 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE-ALIFLATHCRAHGRFEE 534 (557)
Q Consensus 456 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~ 534 (557)
+++...++|++-+...|.+..+|...|.+-..+|+.+.|...|+-+++. ..-+.+. .|-.........|.++.
T Consensus 452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q------p~ldmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ------PALDMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC------cccccHHHHHHHhhhhhhhcchHHH
Confidence 9999999999999999999999999999999999999999999999982 1122333 34445666778999999
Q ss_pred HHHHHHHHhccCCCc
Q 008705 535 AEVYCTRLLDYTGPV 549 (557)
Q Consensus 535 A~~~~~~al~~~~~~ 549 (557)
|..+|++.|+..+.-
T Consensus 526 aR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 526 ARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999876543
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3.8e-16 Score=139.55 Aligned_cols=297 Identities=15% Similarity=0.115 Sum_probs=228.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc--
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK-- 316 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-- 316 (557)
..+|.+.+..-.|++|+++|.+++..+|+...+...+|.||+++.-++-+.+.+.-.++..|+..-+....+..++..
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc
Confidence 345888888889999999999999999999999999999999999999999999999999999887776666555432
Q ss_pred cc----------------hhHHHHHHHH----------HHhhC----CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc
Q 008705 317 EC----------------FSALSYLAHR----------VFMTD----KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL 366 (557)
Q Consensus 317 ~~----------------~~~~~~~~~~----------~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 366 (557)
++ +..+..+++. +++.- ..-|++...+..+|..+++..+|+...+ ++
T Consensus 235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl 311 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DL 311 (557)
T ss_pred cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hc
Confidence 11 1122222211 11111 2357888889999999999999998776 46
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh---hC------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD---IN------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 437 (557)
+|..+.-+...|.++...|+--...+.++.|-+ +- -+.......++.+++...+|++.+.+++..-...-+
T Consensus 312 ~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N 391 (557)
T KOG3785|consen 312 DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN 391 (557)
T ss_pred CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999986655555554433 21 122344567788888899999999999888777788
Q ss_pred CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-h
Q 008705 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-M 515 (557)
Q Consensus 438 ~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~ 515 (557)
+....++++.++.. .|++.+|.+.|-+.-... .+.......||+||...|+++-|...+-+. ..|. .
T Consensus 392 dD~Fn~N~AQAk~a--tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---------~t~~e~ 460 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLA--TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---------NTPSER 460 (557)
T ss_pred cchhhhHHHHHHHH--hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---------CCchhH
Confidence 88889999999999 999999999998876544 334456678999999999999998877543 2333 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 516 VEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
...+..+|....+.++|--|.+.|...-.++|..
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 4455567888889999999999998888887653
No 81
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=8e-17 Score=151.25 Aligned_cols=209 Identities=13% Similarity=0.038 Sum_probs=169.9
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Q 008705 184 IVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR-MHKESLTKYEYLQ 262 (557)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l 262 (557)
.++...+++++|+..+.++++.+|.+..+|... +.++..+| .+++++..+++++
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R-------------------------~~iL~~L~~~l~eeL~~~~~~i 99 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFR-------------------------RLCLEALDADLEEELDFAEDVA 99 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHH-------------------------HHHHHHcchhHHHHHHHHHHHH
Confidence 345667888899999999999999998888655 67777777 5788899999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcccH--HHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHH
Q 008705 263 GTFSFSNYIQAQIAKAQYSLREF--EQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESC 340 (557)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (557)
..+|++..+|..++.++...|+. ++++.+++++++.+|. +..+|
T Consensus 100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk----------------------------------Ny~AW 145 (320)
T PLN02789 100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK----------------------------------NYHAW 145 (320)
T ss_pred HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc----------------------------------cHHHH
Confidence 88999888888888888777763 5667777777777665 55677
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc---CCc----hHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM---KNT----PAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
...+.++...|++++++.++.++++.+|.+..+|..++.+.... |.+ ++++.+..+++..+|++..+|..++.
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ 225 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG 225 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 77888888888899999999999999999999999998887765 333 46788888999999999999998888
Q ss_pred HHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 414 AYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 414 ~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
++.. +++..+|+..+.+++...|.++.++..++.+|..
T Consensus 226 ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 226 LFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 8877 4556778888888888888888888888888876
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.78 E-value=9.4e-17 Score=157.15 Aligned_cols=265 Identities=17% Similarity=0.125 Sum_probs=208.0
Q ss_pred CChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705 231 LNNHWMKDYFLASAYQELRMHKESLTKYEYLQGT--------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR 302 (557)
Q Consensus 231 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 302 (557)
.|..+.....++..|...|++++|+..++.++.. .|.-......+|.+|..++++.+|+.+|++++.+....
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444444455799999999999999999999987 44444455669999999999999999999999864321
Q ss_pred CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc--------CCHHHH
Q 008705 303 VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--------NYLSAW 374 (557)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~ 374 (557)
. -..+|....++..+|..|...|++++|..++++|+++.. .-...+
T Consensus 275 ~--------------------------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 275 F--------------------------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred c--------------------------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 1 022333556788899999999999999999999998632 233457
Q ss_pred HHHhHHHHhcCCchHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC--------CCC
Q 008705 375 TLMGHEYVEMKNTPAAIDAYRRAVDIN--------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ--------PND 438 (557)
Q Consensus 375 ~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~ 438 (557)
..++.++..++++++|+.++++++++. +.-+..+.++|.+|..+|++.+|.++|++++.+. +..
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 789999999999999999999998863 2336778999999999999999999999999864 233
Q ss_pred HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hhc
Q 008705 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA-EER 510 (557)
Q Consensus 439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~ 510 (557)
...+..+|..|.+ .+++.+|.+.|.++..+ .|+....+.+||.+|..+|++++|+++.++++..-+. .+.
T Consensus 409 ~~~l~~la~~~~~--~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~ 486 (508)
T KOG1840|consen 409 GKPLNQLAEAYEE--LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT 486 (508)
T ss_pred hHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence 5578899999999 99999999999998875 3444568999999999999999999999999863332 223
Q ss_pred CCcchHHHHHHHH
Q 008705 511 EGPNMVEALIFLA 523 (557)
Q Consensus 511 ~~~~~~~~~~~la 523 (557)
..|.....-..++
T Consensus 487 ~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 487 ASPTVEDEKLRLA 499 (508)
T ss_pred CCcchhHHHHhhh
Confidence 3344444433333
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.1e-14 Score=135.07 Aligned_cols=362 Identities=13% Similarity=0.052 Sum_probs=242.2
Q ss_pred hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705 154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN 233 (557)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~ 233 (557)
.+.+++++.+...+++...|+++.+..-.-.++.+.++|++|+...++-......+.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~----------------------- 80 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS----------------------- 80 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-----------------------
Confidence 456777788888888888899999999999999999999999844443221111111
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
..|-.+.|.++.+..++|+..++ ..++.+..++...|++++++|+|++|..+|+.+++.+.++.+.... .+++
T Consensus 81 ---~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r-~nl~ 153 (652)
T KOG2376|consen 81 ---FFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR-ANLL 153 (652)
T ss_pred ---hhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH-HHHH
Confidence 01346999999999999999999 4466677789999999999999999999999999877655443222 1221
Q ss_pred HhccchhHHHHHHHHHHhhCC-CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC--------cC--C-----HHHHHHH
Q 008705 314 YAKECFSALSYLAHRVFMTDK-YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD--------KN--Y-----LSAWTLM 377 (557)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~--~-----~~~~~~l 377 (557)
........ . +. +.....| ..-+.+++.+.++...|+|.+|++.+++++.+. .+ . ..+...+
T Consensus 154 a~~a~l~~-~-~~-q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 154 AVAAALQV-Q-LL-QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HHHHhhhH-H-HH-HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 11111110 0 11 1222222 356688999999999999999999999995431 11 1 1346778
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCChHH-------------------------------------------------H
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRA-------------------------------------------------W 408 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------------------------------~ 408 (557)
+.++..+|+.++|...|...+..+|.|... +
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887765110 1
Q ss_pred HHHHHHHHH----------------------------------hCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHHh
Q 008705 409 YGLGQAYEM----------------------------------MHMPLYALHYFRKSVFLQPND-SRLWIAMAQCYETEQ 453 (557)
Q Consensus 409 ~~l~~~~~~----------------------------------~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~ 453 (557)
.+.+..... ...+..|+.++....+..|.. ..+...++.+...
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is-- 388 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS-- 388 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh--
Confidence 111111111 112344555555555555555 4456666677777
Q ss_pred cCcHHHHHHHHHHHH--------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705 454 LHMLEEAIKCYRRAA--------NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 525 (557)
Q Consensus 454 ~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 525 (557)
+|+++.|++.+.... +.. ..|.+...+-.++...++.+.|...+..++..........+..-..+..++.+
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 777777777777322 221 22444445555666666666677777777665444333344455566667888
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 526 CRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 526 ~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
..+.|+-++|...+++.++.+|++..
T Consensus 468 ~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhCCchHH
Confidence 88999999999999999999877643
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.5e-13 Score=127.79 Aligned_cols=359 Identities=14% Similarity=0.104 Sum_probs=222.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhc---------CCC---hhHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSL---------NLN---NHWMKDYF 240 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l---------~~~---~~~~~~~~ 240 (557)
.-+...|..+|.--..++++..|..+|++|+..+..+...|...+.+-.....++.. .+| ..|..+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-- 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-- 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH--
Confidence 334445555666666666666666666666666666666665554432222222110 011 111111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
..+-..+|+...|.++|++-++-.|+ ..+|......-.+.++.+.|..+|++.+-..|. ...+..++..-...|...
T Consensus 148 -~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 148 -IYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVA 224 (677)
T ss_pred -HHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHH
Confidence 34445678888888888888877774 345666666666777788888888888777764 456667777777777777
Q ss_pred HHHHHHHHHHhhCCCChh---HHHHHHHHHhhhCchHHHHHHHHHHHhc-------------------------------
Q 008705 321 ALSYLAHRVFMTDKYRPE---SCCIIGNYYSLKGQHEKSVVYFRRALKL------------------------------- 366 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------- 366 (557)
-+...+..++..-.++-. .+...|..-..+..++.|...|+-|+..
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 777777776665444222 2333444444555666666666555544
Q ss_pred -------------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH---------HHHHHHH-HHHHhCChHH
Q 008705 367 -------------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR---------AWYGLGQ-AYEMMHMPLY 423 (557)
Q Consensus 367 -------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~-~~~~~~~~~~ 423 (557)
+|.+.++|+..-.+-...|+.+.-.+.|++|+..-|.... .|.+.+. .-....+.+.
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444455555555555556666666666666654443211 1111111 1123455566
Q ss_pred HHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705 424 ALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499 (557)
Q Consensus 424 A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 499 (557)
+...|+.++++-|.. +.+|...|....+ +.+...|.+.+-.|+-..|.+ .++.....+-.++++++....+|+
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR--q~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR--QLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHH--HcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666665543 4566666666666 666777777777777666654 234445556677788888999999
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 500 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
+.++ ..|++..+|...|.+...+|+.+.|...|+-|++-.
T Consensus 462 kfle-------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 462 KFLE-------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHh-------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9888 799999999999999999999999999999998853
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=7.7e-13 Score=126.56 Aligned_cols=416 Identities=14% Similarity=0.055 Sum_probs=271.4
Q ss_pred chhhHHHHHHHhhhhhhHHHHHHHHhhhcC--Cchh--hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHH
Q 008705 89 EDSDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSV--FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERE 164 (557)
Q Consensus 89 ~~~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~--~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (557)
.+.+.+----+++..+.|++|+.+.+.-.. .... |-.+|+.|-.+ +.+++...
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln---k~Dealk~-------------------- 101 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN---KLDEALKT-------------------- 101 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc---cHHHHHHH--------------------
Confidence 345566566677777888888866665432 2222 35566665554 33443332
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHH--hhhcHH--HHhhc--CCChhHHHH
Q 008705 165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKS--LCTSID--ILNSL--NLNNHWMKD 238 (557)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~--~~~~~~--~~~~l--~~~~~~~~~ 238 (557)
+...++.+..++.+.|.+++++|+|++|..+|+..++.+.+..+.-....- ...... ....+ ...+.+...
T Consensus 102 ---~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 102 ---LKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred ---HhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 223457778899999999999999999999999999877766554433221 111111 12222 334577788
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhc--------CCC-------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGT--------FSF-------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV 303 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 303 (557)
|+.|.++...|+|.+|++.+++++.+ +.+ -..+..+++.++..+|+..+|..+|..+++.+|.+.
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999432 111 123678999999999999999999999999999887
Q ss_pred CcHHHHHHHHHhccchhHHHH-----HHHHHHhhC----------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc
Q 008705 304 DDMDMYSNVLYAKECFSALSY-----LAHRVFMTD----------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK 368 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 368 (557)
.......+-+........... ..+...... .....++.+.+...+..+.-+.+.+...+.-...|
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p 338 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP 338 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc
Confidence 666555554443321111100 111100000 01122334455555555655665555544433444
Q ss_pred CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCChHHHHHHHHHHH--------hcCCCCH
Q 008705 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-YRAWYGLGQAYEMMHMPLYALHYFRKSV--------FLQPNDS 439 (557)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~--------~~~p~~~ 439 (557)
..................+.+|++.+....+.+|.+ ..+...++++...+|+++.|+..+.... +. ...|
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P 417 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP 417 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh
Confidence 443333333444444447889999999999988887 6678888999999999999999998333 22 2234
Q ss_pred HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (557)
.+...+-..+.. .++.+-|...+..++.. .+.....+..++..-.+.|+-++|...+++.++ ..
T Consensus 418 ~~V~aiv~l~~~--~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k-------~n 488 (652)
T KOG2376|consen 418 GTVGAIVALYYK--IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK-------FN 488 (652)
T ss_pred hHHHHHHHHHHh--ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH-------hC
Confidence 455555556666 66655555555555543 333344667778888888999999999999999 68
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 513 PNMVEALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
|++.++...+...|... +.+.|..+-++
T Consensus 489 ~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 489 PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 99999988888777765 56677665544
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=6.5e-14 Score=125.45 Aligned_cols=313 Identities=13% Similarity=0.076 Sum_probs=200.6
Q ss_pred HHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Q 008705 186 LKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTF 265 (557)
Q Consensus 186 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 265 (557)
+....+|..|+..++-....+....+ ....++|.|++.+|+|++|+..|.-+.+.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~------------------------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEED------------------------SLQLWIAHCYFHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhH------------------------HHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence 34567888899888877654433221 122456999999999999999999998877
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHH
Q 008705 266 SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGN 345 (557)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 345 (557)
..+.+++..+|.|++..|.|.+|...-.++ |..+-....+-.+....++..+...+-..+.. ..+-...++.
T Consensus 88 ~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAs 159 (557)
T KOG3785|consen 88 DAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLAS 159 (557)
T ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHH
Confidence 778889999999999999999998776554 44443344444444444444444333222211 1133344555
Q ss_pred HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---------------------
Q 008705 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD--------------------- 404 (557)
Q Consensus 346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--------------------- 404 (557)
+.+..-.|++|+..|++.+.-+|+....-..++.+|.++.-++-+-+.+.-.+...|++
T Consensus 160 vhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae 239 (557)
T KOG3785|consen 160 VHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE 239 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence 55555556666666666666556555555555555555555555555554444444433
Q ss_pred ---------------------------------------------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705 405 ---------------------------------------------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439 (557)
Q Consensus 405 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 439 (557)
+++..+|...|..+++..+|+..++ .++|..|
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP 316 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTP 316 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCCh
Confidence 4556666677777788888877765 4567776
Q ss_pred HHHHHHHHHHhHHhcCc-------------------------------------------HHHHHHHHHHHHhcCCChHH
Q 008705 440 RLWIAMAQCYETEQLHM-------------------------------------------LEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~~-------------------------------------------~~~A~~~~~~al~~~p~~~~ 476 (557)
.-+...|.+... .|+ +++.+.++...-...-++..
T Consensus 317 ~EyilKgvv~aa--lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~ 394 (557)
T KOG3785|consen 317 YEYILKGVVFAA--LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD 394 (557)
T ss_pred HHHHHHHHHHHH--hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 666666655554 443 33333333322222334555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
..+++|.++...|++.+|.+.|-+.-. +.-.+......+||+||.+.|..+-|.+.+-+
T Consensus 395 Fn~N~AQAk~atgny~eaEelf~~is~------~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 395 FNLNLAQAKLATGNYVEAEELFIRISG------PEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hhhHHHHHHHHhcChHHHHHHHhhhcC------hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 678899999999999999998876543 11134455667899999999999999887754
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.70 E-value=4.6e-15 Score=136.32 Aligned_cols=192 Identities=17% Similarity=0.052 Sum_probs=155.7
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH---
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR--- 406 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 406 (557)
++..+..++.+|..+...|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345778899999999999999999999999999998875 57899999999999999999999999999998876
Q ss_pred HHHHHHHHHHHh--------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705 407 AWYGLGQAYEMM--------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 407 ~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
+++.+|.++... |++++|+..|++++..+|++...+..+..+... .+.. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~--~~~~-----------------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL--RNRL-----------------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH--HHHH-----------------HHHH
Confidence 688899999876 788999999999999999987665444322221 1110 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 547 (557)
..+|.++...|++.+|+..|+++++..+ ..|..+.+++.+|.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYP----DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCC----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788899999999999999999998321 2455678999999999999999999998888766543
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.69 E-value=8.8e-14 Score=138.25 Aligned_cols=303 Identities=17% Similarity=0.087 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc-
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK- 316 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~- 316 (557)
.++.+.++...|++++|++.+++....-.+...++-..|.++..+|++++|...|..++..+|++...+..+..++...
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 4567899999999999999999998888888999999999999999999999999999999999988888887777333
Q ss_pred ----cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHH-HHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHH
Q 008705 317 ----ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEK-SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI 391 (557)
Q Consensus 317 ----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 391 (557)
........++.......|....+.. +.-.+..-.++.. +..++...+.. .-|.....+-.+|....+..-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 2466777778877777765433322 2222222223433 44455555543 45556666666665433333222
Q ss_pred HHHHHHHhh---------------CCCC--hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc
Q 008705 392 DAYRRAVDI---------------NPRD--YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL 454 (557)
Q Consensus 392 ~~~~~al~~---------------~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 454 (557)
..+...+.. .|.. ..+++.+++.|...|++++|+.+++++|...|+.++.+...|.++.. .
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh--~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH--A 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--C
Confidence 333322211 1112 24568899999999999999999999999999999999999999999 9
Q ss_pred CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc---chHHHHHHHHHHHHHcCC
Q 008705 455 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP---NMVEALIFLATHCRAHGR 531 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~ 531 (557)
|++.+|..+++.+..+++.+-.+-...+..+.+.|+.++|...+......- .....+- ...+.....|.+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED-VDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC-CCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999988776510 0000001 113334457999999999
Q ss_pred HHHHHHHHHHHhccC
Q 008705 532 FEEAEVYCTRLLDYT 546 (557)
Q Consensus 532 ~~~A~~~~~~al~~~ 546 (557)
+..|+..|..+.+..
T Consensus 321 ~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 321 YGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988753
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1e-15 Score=127.46 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 357 VVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
..+|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35778888888774 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 437 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
+++.+++.+|.++.. .|++++|+..|++++...|+++..+..++.+....
T Consensus 90 ~~~~a~~~lg~~l~~--~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKM--MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 888888888888888 88888888888888888888888887777766543
No 90
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=9.6e-15 Score=134.19 Aligned_cols=114 Identities=18% Similarity=0.084 Sum_probs=97.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705 172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH 251 (557)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~ 251 (557)
.+..+..++.+|..+...|++++|+..|++++..+|.+...... .+.+|.++...|++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a----------------------~~~la~~~~~~~~~ 86 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQA----------------------QLDLAYAYYKSGDY 86 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHH----------------------HHHHHHHHHhcCCH
Confidence 46778899999999999999999999999999999987632211 13459999999999
Q ss_pred HHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCCCCcHH
Q 008705 252 KESLTKYEYLQGTFSFSNY---IQAQIAKAQYSL--------REFEQVEVIFEELLRNDPYRVDDMD 307 (557)
Q Consensus 252 ~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~ 307 (557)
++|+..|+++++.+|+++. +++.+|.++... |++++|+..|++++..+|.+.....
T Consensus 87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 153 (235)
T TIGR03302 87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD 153 (235)
T ss_pred HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence 9999999999999998765 688999999876 8999999999999999998755443
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=1.3e-13 Score=135.41 Aligned_cols=277 Identities=13% Similarity=0.025 Sum_probs=198.9
Q ss_pred CChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHH
Q 008705 231 LNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMD 307 (557)
Q Consensus 231 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 307 (557)
.|+..+.++.+|.++...|+.+.+...+.++....|. ..+.....+.++...|++++|...++++++.+|.+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL---- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----
Confidence 4667788888888888888888888888887776554 345667778888888888888888888888888653
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705 308 MYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE 383 (557)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 383 (557)
.++.. +..+.. .+....+...+......+|....++..+|.++..
T Consensus 78 ------------------------------~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 78 ------------------------------LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred ------------------------------HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH
Confidence 22221 222222 3444455555554445667777888899999999
Q ss_pred cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhHHhcCcHHH
Q 008705 384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS----RLWIAMAQCYETEQLHMLEE 459 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~~~~~~~~ 459 (557)
.|++++|+..++++++.+|++..++..+|.++...|++++|+.++++++...|.++ ..+..+|.++.. .|++++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~--~G~~~~ 204 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE--RGDYEA 204 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH--CCCHHH
Confidence 99999999999999999999999999999999999999999999999999887543 346689999999 999999
Q ss_pred HHHHHHHHHhcCCC--hHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705 460 AIKCYRRAANCNDS--EAIALN---QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE 534 (557)
Q Consensus 460 A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 534 (557)
|+..|++++...|. ...... .+...+...|....+..+ +.+........ ..+.........+.++...|+.++
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHH
Confidence 99999999876662 221111 233334445544433333 22222111100 112223333468888999999999
Q ss_pred HHHHHHHHhccC
Q 008705 535 AEVYCTRLLDYT 546 (557)
Q Consensus 535 A~~~~~~al~~~ 546 (557)
|...++.+....
T Consensus 283 a~~~L~~l~~~~ 294 (355)
T cd05804 283 LDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999998886643
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.66 E-value=6.7e-13 Score=132.04 Aligned_cols=302 Identities=12% Similarity=0.028 Sum_probs=226.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
.+++.....++...|++++|++.+++....-++....... +|.++..+|++++|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~-------------------------rA~ll~kLg~~~eA~ 58 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEK-------------------------RAELLLKLGRKEEAE 58 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHH-------------------------HHHHHHHcCCHHHHH
Confidence 4677788899999999999999999877766665544433 499999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch-hHHHHHHHHH
Q 008705 256 TKYEYLQGTFSFSNYIQAQIAKAQYSL-----REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF-SALSYLAHRV 329 (557)
Q Consensus 256 ~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 329 (557)
..|..+++.+|++...+..+..+.... .+.+.-..+|++.....|........--. ......+ ..+..++...
T Consensus 59 ~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~ 137 (517)
T PF12569_consen 59 KIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQ 137 (517)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHH
Confidence 999999999999999888888887333 35777888999988888864332221111 1111122 2233333333
Q ss_pred HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc---------------CcCC--HHHHHHHhHHHHhcCCchHHHH
Q 008705 330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL---------------DKNY--LSAWTLMGHEYVEMKNTPAAID 392 (557)
Q Consensus 330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------~p~~--~~~~~~l~~~~~~~~~~~~A~~ 392 (557)
+ ...-|.++..+-..|....+..-....+...... .|.. ..+++.++..|-..|++++|++
T Consensus 138 l--~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 138 L--RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred H--hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3 3346677777777776444433333333332211 1111 2456788999999999999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-
Q 008705 393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN- 471 (557)
Q Consensus 393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~- 471 (557)
+.+++++..|..++.+...|.++-..|++.+|...++.+-.+++.|-.+-...+..+.+ .|+.++|.+.+......+
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR--a~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR--AGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH--CCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999998888888999999 999999999988776544
Q ss_pred -CCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705 472 -DSE-------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507 (557)
Q Consensus 472 -p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (557)
|.. .+.....|.+|.+.|++..|+..|..+.+.+..
T Consensus 294 ~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 294 DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 211 334456799999999999999999998885543
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=4.5e-15 Score=123.59 Aligned_cols=128 Identities=18% Similarity=0.086 Sum_probs=119.8
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
-...|+++++++|++ ++.+|.++...|++++|+.+|++++..+|.++.+|..+|.++.. .|++++|+.+|++++.
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM--LKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--HhhHHHHHHHHHHHHh
Confidence 346899999999875 66789999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc
Q 008705 470 CNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH 529 (557)
Q Consensus 470 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 529 (557)
++|.++.+++++|.++...|++++|+..|+++++ ..|+++..+..++.+....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-------~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-------MSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 7899999998888776543
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.65 E-value=3.1e-14 Score=123.50 Aligned_cols=177 Identities=18% Similarity=0.145 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 008705 356 SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435 (557)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 435 (557)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|++.+|+..++++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444555556666555 5566666666666666666666555566665555556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705 436 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 515 (557)
Q Consensus 436 p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (557)
|+++++|..+|.+|.+ .|++++|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+.. ..+.+
T Consensus 131 p~d~~~~~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-------~~~ad 201 (257)
T COG5010 131 PTDWEAWNLLGAALDQ--LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL-------SPAAD 201 (257)
T ss_pred CCChhhhhHHHHHHHH--ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-------CCCCc
Confidence 6666666666666666 66666666666666666666666666666666666666666666666555 44445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 516 VEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 516 ~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
..+..+++.+...+|++.+|.....+-
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 566666666666666666665554443
No 95
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.65 E-value=2.7e-15 Score=136.75 Aligned_cols=274 Identities=17% Similarity=0.181 Sum_probs=196.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFS----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK 316 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 316 (557)
-|.-+++.|++...+..|+.+++...++ ..++.++|.+|+..++|++|+++-..=+.+...
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~--------------- 87 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL--------------- 87 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH---------------
Confidence 3888899999999999999999987665 356789999999999999998875433322110
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc------CCHHHHHHHhHHHHhcCC----
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK------NYLSAWTLMGHEYVEMKN---- 386 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~---- 386 (557)
+...-..+.+.-.+|+.+..+|.|++|+.+..+-+.+.. ....+++++|.+|...|+
T Consensus 88 -------------lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~ 154 (639)
T KOG1130|consen 88 -------------LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL 154 (639)
T ss_pred -------------hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC
Confidence 000111234455688888888888888888777665432 134678888888887664
Q ss_pred ----------------chHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------
Q 008705 387 ----------------TPAAIDAYRRAVDINPR------DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------ 438 (557)
Q Consensus 387 ----------------~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------ 438 (557)
++.|+++|..-+++... ..+++-+||..|+.+|+|+.|+..-+.-+.+....
T Consensus 155 ~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae 234 (639)
T KOG1130|consen 155 EAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE 234 (639)
T ss_pred CChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 23344555444443222 14567788888999999999998887776664332
Q ss_pred HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512 (557)
Q Consensus 439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (557)
.+++.++|.++.- .|+++.|+++|++.+.+ ... .....+.||..|.-..++++|+.|+.+-+.. ..+.+..
T Consensus 235 RRA~sNlgN~hif--lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI-AqeL~Dr 311 (639)
T KOG1130|consen 235 RRAHSNLGNCHIF--LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI-AQELEDR 311 (639)
T ss_pred HHhhcccchhhhh--hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 3578889999998 99999999999887654 222 3456788999999999999999999887773 2222334
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
.....+++.||..+-..|..++|+.+.++.+++
T Consensus 312 iGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 312 IGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 556778888999999999999999888877664
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.63 E-value=8e-14 Score=120.95 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=159.8
Q ss_pred HHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705 328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA 407 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (557)
.....+|.+..+ ..++..+...|+-+.+..+..++...+|.+.......|...+..|++..|+..++++....|++.++
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 344556667777 8899999999999999999999998899999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 487 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 487 (557)
|..+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.- .|+++.|..++..+....+.+..+..+++.+...
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L--~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL--RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH--cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 9999999999999999988899999999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 008705 488 LGRDEEAAFYYKKDLE 503 (557)
Q Consensus 488 ~g~~~~A~~~~~~al~ 503 (557)
.|++++|...-.+-+.
T Consensus 215 ~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 215 QGDFREAEDIAVQELL 230 (257)
T ss_pred cCChHHHHhhcccccc
Confidence 9999999887665443
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=8.9e-12 Score=114.26 Aligned_cols=292 Identities=12% Similarity=-0.029 Sum_probs=232.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHhccchh
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR-VDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~ 320 (557)
|..-+..|+|.+|.+...+.-+..+...-.+..-+.+-.++|+++.|-.++.++-+..+++ .......+.++...++..
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 6677788999999999999877777777778888899999999999999999999884433 345567788899999999
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH--------HHHHHHhHHHHhcCCchHHHH
Q 008705 321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL--------SAWTLMGHEYVEMKNTPAAID 392 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~l~~~~~~~~~~~~A~~ 392 (557)
.+..-...+....|.++++......+|...|++.....+..+.-+..--+. .+|..+-.-....+..+.-..
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 999999999999999999999999999999999999998887766542221 122222222222222333233
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705 393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 472 (557)
Q Consensus 393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p 472 (557)
+++..-..-.+++.....++.-+...|++++|.+....+++..-+ +.....++. .. .+++..=++..++.++..|
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~~--l~--~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIPR--LR--PGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHhh--cC--CCCchHHHHHHHHHHHhCC
Confidence 444443444456788888999999999999999999999987644 332222222 23 6888999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 473 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 473 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
+++..+..||.++.+.+.+.+|..+|+.+++ ..| +...+..+|..+.+.|+..+|.+.++.++...
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-------~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK-------LRP-SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-------cCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 344 56678999999999999999999999998653
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.62 E-value=8.7e-14 Score=136.17 Aligned_cols=225 Identities=18% Similarity=0.256 Sum_probs=204.2
Q ss_pred CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHH
Q 008705 230 NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMY 309 (557)
Q Consensus 230 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 309 (557)
..|+.|.....++..+...|-...|+.+|++. +.|-....||...|+..+|..+..+-++ .|.++-.+..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 57899999999999999999999999999987 5678889999999999999999999999 56667778888
Q ss_pred HHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH
Q 008705 310 SNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA 389 (557)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 389 (557)
+.+.....-++++..+.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 88887777777777776653 344667778888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
|.+.|.+++.++|++..+|.+++.+|.+.++-.+|...++++++.+-.++.+|.+.-.+... .|.+++|++.+.+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd--vge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD--VGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh--cccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999 9999999999999987
Q ss_pred cC
Q 008705 470 CN 471 (557)
Q Consensus 470 ~~ 471 (557)
+.
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 63
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=4.1e-14 Score=124.36 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=124.4
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
-+-.|+..|+++......++.. +|.. -+...++.++++..+++++..+|++...|..+|.+|...|+++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3556888999888654442221 1211 1223778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHH-hHHhcCc--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705 423 YALHYFRKSVFLQPNDSRLWIAMAQCY-ETEQLHM--LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 499 (557)
+|+..|++++++.|+++.++..+|.++ .. .|+ +++|...++++++.+|+++.+++.+|.++...|++++|+.+++
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~--~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQ--AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999975 56 677 5999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 008705 500 KDLER 504 (557)
Q Consensus 500 ~al~~ 504 (557)
++++.
T Consensus 169 ~aL~l 173 (198)
T PRK10370 169 KVLDL 173 (198)
T ss_pred HHHhh
Confidence 99984
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.62 E-value=1.3e-13 Score=142.98 Aligned_cols=266 Identities=12% Similarity=0.095 Sum_probs=205.2
Q ss_pred ccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 008705 204 NSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR 283 (557)
Q Consensus 204 ~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 283 (557)
..+|.+..+|..| +..+...+++++|+..++..++.+|+....++.+|.++++.+
T Consensus 25 ~~~p~n~~a~~~L-------------------------i~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~ 79 (906)
T PRK14720 25 NYSLSKFKELDDL-------------------------IDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRR 79 (906)
T ss_pred cCCcchHHHHHHH-------------------------HHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc
Confidence 4567778878776 888889999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHH
Q 008705 284 EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (557)
Q Consensus 284 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 363 (557)
++.++... .++...+.+.. + .+...+...+...+.+..+++.+|.||-..|++++|...|+++
T Consensus 80 ~~~~~~lv--~~l~~~~~~~~--------------~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 80 PLNDSNLL--NLIDSFSQNLK--------------W-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred chhhhhhh--hhhhhcccccc--------------h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99888877 77776665432 2 1222222233335666778999999999999999999999999
Q ss_pred HhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH-
Q 008705 364 LKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW- 442 (557)
Q Consensus 364 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~- 442 (557)
++.+|+++.+..++|..|... +.++|+.++.+|+.. +...+++..+..+..+.+..+|.+.+.+
T Consensus 143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~ 207 (906)
T PRK14720 143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFL 207 (906)
T ss_pred HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHH
Confidence 999999999999999999999 999999999999876 5666788888888888888888875542
Q ss_pred -------------------HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 443 -------------------IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 443 -------------------~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.-+-.+|.. .+++++++.+++.+++.+|.+..+...++.+|. +.|.. ...|+..++
T Consensus 208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~--~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 208 RIERKVLGHREFTRLVGLLEDLYEPYKA--LEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhh--hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 222266677 888999999999999999998888888888887 44443 555666555
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 504 RMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
.. .+--.-.++..|+.-|++-+.+++.+
T Consensus 283 ~s------------------~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 283 MS------------------DIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred Hh------------------ccccCCccHHHHHHHHHHHeeecCCC
Confidence 21 11111134567777777777666443
No 101
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=3.6e-12 Score=109.57 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=128.9
Q ss_pred ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705 232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN 311 (557)
Q Consensus 232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (557)
++.|...-.+..+....|+.+-|..+++++...+|++..+....|..+...|++++|+++|+..++.+|.+.......
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK-- 126 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK-- 126 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH--
Confidence 344444444577778889999999999999999999999999999999999999999999999999999864433322
Q ss_pred HHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHH
Q 008705 312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI 391 (557)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 391 (557)
--+...+|+.-+|++.+..-++..+.+.++|..++.+|+..|+|++|.
T Consensus 127 --------------------------------lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 127 --------------------------------LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred --------------------------------HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 223334555566666666666666666666666666666666666666
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhC---ChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 392 DAYRRAVDINPRDYRAWYGLGQAYEMMH---MPLYALHYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
-+|++.+-+.|.++..+..+|.+++.+| +..-|.++|.++++++|.+...++.+-.+
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 6666666666666666666666665554 34456666666666666655555544333
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=9.2e-14 Score=122.13 Aligned_cols=126 Identities=14% Similarity=0.202 Sum_probs=118.9
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhCC--hHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY-EMMHM--PLYAL 425 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~--~~~A~ 425 (557)
..++.++++..++++++.+|++...|..+|.++...|++++|+..|++++.++|++..++..+|.++ ...|+ +++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999999999974 67787 59999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
..++++++.+|+++.++..+|.++.. .|++++|+.+|+++++..|.+..
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~--~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFM--QADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999 99999999999999999887543
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=5.6e-14 Score=128.30 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=211.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY 258 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 258 (557)
+-+-|.-+++.|+....+..|+.+++....+...+..+ +..+|.+|+.+++|.+|+++-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAI---------------------YsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAI---------------------YSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHH---------------------HHHhcchhhhHhhHHHHHhhh
Confidence 45668889999999999999999999888776544332 223699999999999999864
Q ss_pred HHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705 259 EYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332 (557)
Q Consensus 259 ~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (557)
..=+.+ .-.....--.+|..+...|.|++|+.+..+-+.+...-. .++
T Consensus 79 ~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg-----------------------Drv--- 132 (639)
T KOG1130|consen 79 THDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG-----------------------DRV--- 132 (639)
T ss_pred hhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh-----------------------HHH---
Confidence 432221 122334456788889999999999998887765432110 000
Q ss_pred CCCChhHHHHHHHHHhhhCc--------------------hHHHHHHHHHHHhcCcC------CHHHHHHHhHHHHhcCC
Q 008705 333 DKYRPESCCIIGNYYSLKGQ--------------------HEKSVVYFRRALKLDKN------YLSAWTLMGHEYVEMKN 386 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~ 386 (557)
....+++.+|++|...|+ ++.|.++|..-+++... ...++-++|..|+-+|+
T Consensus 133 --~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGd 210 (639)
T KOG1130|consen 133 --LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGD 210 (639)
T ss_pred --hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeecc
Confidence 023445556666554443 34566666665555332 23456788899999999
Q ss_pred chHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHhHHhc
Q 008705 387 TPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ----P--NDSRLWIAMAQCYETEQL 454 (557)
Q Consensus 387 ~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p--~~~~~~~~l~~~~~~~~~ 454 (557)
|+.|+..-+.-+.+.... -+++.++|.++.-+|+++.|+++|++.+.+. . ..+...+.+|..|.- .
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl--l 288 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL--L 288 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH--H
Confidence 999998888777654322 5678899999999999999999999876542 2 235577889999998 9
Q ss_pred CcHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705 455 HMLEEAIKCYRRAANCND------SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 528 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 528 (557)
.++++|+.++.+-+.+.. ....+++.||..+...|..++|+.+.++.++.. ...........+..++...-..
T Consensus 289 ~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s-~ev~D~sgelTar~Nlsdl~~~ 367 (639)
T KOG1130|consen 289 KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS-LEVNDTSGELTARDNLSDLILE 367 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHhCCcchhhhhhhhhHHHHHH
Confidence 999999999988776532 235588999999999999999999988888732 2222222244556666666665
Q ss_pred cCCHH
Q 008705 529 HGRFE 533 (557)
Q Consensus 529 ~g~~~ 533 (557)
.|..+
T Consensus 368 lG~~d 372 (639)
T KOG1130|consen 368 LGQED 372 (639)
T ss_pred hCCCc
Confidence 55433
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=2e-11 Score=111.94 Aligned_cols=294 Identities=13% Similarity=0.044 Sum_probs=154.2
Q ss_pred hchhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705 154 VNRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN 233 (557)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~ 233 (557)
..+++..+++.+.+..+..+.-...+..-+...-+.|+++.|-.++.++-+..++..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l---------------------- 153 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL---------------------- 153 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH----------------------
Confidence 3455666666665543333333333333445556667777777777766665333221
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
......+.+....|+++.|.....++++..|.++.++....++|...|++.....+..++.+..--+.+-...+-+
T Consensus 154 --~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-- 229 (400)
T COG3071 154 --AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-- 229 (400)
T ss_pred --HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH--
Confidence 1112346666677777777777777777777777777777777777777777777766666544322211111110
Q ss_pred HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHH
Q 008705 314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDA 393 (557)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 393 (557)
.+|..+-+-....+..+.-..+++..-..-.+++.....++.-+...|+.++|.+.
T Consensus 230 ------------------------~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 230 ------------------------QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred ------------------------HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 01111100011111111111233322222233445555555556666666666666
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
.+.+++..-+. ..... .-...-+++..=++..++.++..|+++..+..+|..+.+ .+.+.+|..+|+.+++..|+
T Consensus 286 i~~~Lk~~~D~-~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k--~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 286 IEDALKRQWDP-RLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK--NKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHHHhccCh-hHHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH--hhHHHHHHHHHHHHHhcCCC
Confidence 66666544322 21111 112234555566666666666666666666666666666 66666666666666665544
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 474 EAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
...+..+|.++.++|+..+|.+.+++++.
T Consensus 361 -~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 361 -ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34455566666666666666666666654
No 105
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.4e-12 Score=111.95 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=79.8
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
....|+.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+..++...-.+...+|+.-+|++
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 33445555555555554444455555555555555555555555555555555555555554444444444555555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 008705 427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG---RDEEAAFYYKKDLE 503 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~ 503 (557)
.+...++..+.|.++|..++.+|.. .|+|++|.-|+++.+-+.|.++..+..+|.+++-+| +.+-|.++|.++++
T Consensus 142 ~ln~YL~~F~~D~EAW~eLaeiY~~--~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 142 ELNEYLDKFMNDQEAWHELAEIYLS--EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555 555555555555555555555555555555544443 34445555555555
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.57 E-value=2.9e-11 Score=133.95 Aligned_cols=327 Identities=12% Similarity=0.003 Sum_probs=238.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC----HHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN----WNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL 248 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~ 248 (557)
..++......+.++...|++++|...+..+....+.. ..... ......++.++...
T Consensus 406 ~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~--------------------~~~~~~~a~~~~~~ 465 (903)
T PRK04841 406 LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ--------------------AEFNALRAQVAIND 465 (903)
T ss_pred hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH--------------------HHHHHHHHHHHHhC
Confidence 3456677888999999999999999999886643221 10010 01122357888899
Q ss_pred hhhHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705 249 RMHKESLTKYEYLQGTFSFSN-----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS 323 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 323 (557)
|++++|...+++++...+... .+...+|.++...|++++|...+++++...........
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~---------------- 529 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY---------------- 529 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH----------------
Confidence 999999999999988544422 34567888899999999999999999876443211000
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--------CHHHHHHHhHHHHhcCCchHHHHHHH
Q 008705 324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--------YLSAWTLMGHEYVEMKNTPAAIDAYR 395 (557)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~ 395 (557)
...+...+|.++...|++++|...+++++..... ....+..+|.++...|++++|...++
T Consensus 530 ------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 597 (903)
T PRK04841 530 ------------ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR 597 (903)
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1234567889999999999999999998876221 12345678889999999999999999
Q ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHH----HHHHHHhHHhcCcHHHHHHH
Q 008705 396 RAVDINPR-----DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWI----AMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 396 ~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~----~l~~~~~~~~~~~~~~A~~~ 463 (557)
+++..... ...++..+|.++...|++++|...+.++..+.+.. ..... .....+.. .|+.+.|...
T Consensus 598 ~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~ 675 (903)
T PRK04841 598 KGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM--TGDKEAAANW 675 (903)
T ss_pred HhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH--CCCHHHHHHH
Confidence 99875332 24456678999999999999999999997653321 11111 12244455 7899999999
Q ss_pred HHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 464 YRRAANCNDSEA----IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539 (557)
Q Consensus 464 ~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 539 (557)
+.......+... ..+..++.++...|++++|...+++++..... .+.......++..+|.++...|+.++|...+
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~-~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS-LRLMSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877655332222 23567899999999999999999999985333 2233456778899999999999999999999
Q ss_pred HHHhccCCCch
Q 008705 540 TRLLDYTGPVS 550 (557)
Q Consensus 540 ~~al~~~~~~~ 550 (557)
.+++++..+..
T Consensus 755 ~~Al~la~~~g 765 (903)
T PRK04841 755 LEALKLANRTG 765 (903)
T ss_pred HHHHHHhCccc
Confidence 99999865443
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=8.7e-13 Score=115.66 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=115.4
Q ss_pred HhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705 187 KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS 266 (557)
Q Consensus 187 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 266 (557)
.+..+|..||+++..-.+..|.+..+...| |.||+...++..|..+|+++-...|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlL-------------------------gyCYY~~Q~f~~AA~CYeQL~ql~P 75 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLL-------------------------GYCYYRLQEFALAAECYEQLGQLHP 75 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 455566777777777666666665555444 7777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705 267 FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY 346 (557)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 346 (557)
......+..|..+++.+.+.+|+.....+...+.-....+..-+.+.+..+++..+..+.++.. ..+.+.+....|.+
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchhe
Confidence 6666666667777777777777666655544322222333444555555666655555544421 11345556666666
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
.++.|+++.|++-|+.+++...-.+-.-++++.++++.|++..|+++..+.++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66777777777777777666666666666666666777777777666655554
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.56 E-value=2.6e-13 Score=132.92 Aligned_cols=222 Identities=20% Similarity=0.235 Sum_probs=192.5
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705 265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344 (557)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 344 (557)
.|........++..+...|-...|+.+|++.-. |.....+|...|+..++..+..+.++ .|.++..|+.+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem--------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM--------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH--------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 344556678899999999999999999998744 44566778888888888888888777 677888999998
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA 424 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 424 (557)
++.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+++|.+..+.++++.|
T Consensus 465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 8887777777777766543 3446777888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 425 LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 425 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
..+|.+++.+.|++..+|++++..|.. .++..+|...++++++.+-.+..+|.+.-.+....|.+++|++.+.+.+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~--~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIR--LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHH--HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999988888999999999999999999999999887
No 109
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.55 E-value=1.9e-10 Score=111.35 Aligned_cols=408 Identities=13% Similarity=0.091 Sum_probs=220.8
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhcCC---chhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh----
Q 008705 95 LLAKSYFDCREYRRAAHVLRDQTGR---RSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST---- 167 (557)
Q Consensus 95 ~la~~~~~~~~y~~A~~~l~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---- 167 (557)
.||.-|++.|.|++|..+|++.+.. ...|-..+-.|..-+........++....+......-+++--...++.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 4599999999999999999998752 233444443344333222222222110011111111112211112211
Q ss_pred --------hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhc-cCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHH
Q 008705 168 --------SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVN-SYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD 238 (557)
Q Consensus 168 --------~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 238 (557)
++..+|.+..-|..+-. ...|+..+-+..|..|++ .+|.-... +.-...
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~G--------------------s~~~Lw 390 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVG--------------------SPGTLW 390 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCC--------------------ChhhHH
Confidence 23345666666655443 346677777777777764 44542210 000111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcC-CCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTF-SFS---NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY 314 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 314 (557)
.-.|..|...|+.+.|..+|+++.... +.- ..+|..-|..-....+++.|+.+.+++...... +. . .++
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~-~~-~-----~~y 463 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN-PE-L-----EYY 463 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc-hh-h-----hhh
Confidence 223888888889999999999887753 322 456777788888888888888888888764322 11 0 000
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY 394 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 394 (557)
..+. ....-++ .+..+|...+.+....|-++.....|++.+.+.--.+....+.|..+.+..-+++|.+.|
T Consensus 464 d~~~--pvQ~rlh-------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 464 DNSE--PVQARLH-------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred cCCC--cHHHHHH-------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0000 0000011 134556666666666777777777777777766666666667777666666777777777
Q ss_pred HHHHhhC--CCChHHHHHHHH---HHHHhCChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 395 RRAVDIN--PRDYRAWYGLGQ---AYEMMHMPLYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 395 ~~al~~~--p~~~~~~~~l~~---~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
++.+.+. |.-.++|...-. .-..-...+.|..+|+++++..|... .++...+..-.. -|.-..|+..|++|
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe--~GLar~amsiyera 612 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE--HGLARHAMSIYERA 612 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence 7776654 333444433221 12223356667777777777665321 244445555555 66667777777776
Q ss_pred HhcCCChHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 468 ANCNDSEAIALNQLAKLHH-----ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 468 l~~~p~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
-..-+.. -.+.+=.+|. .-| .......|+++++.+ .+..........|....+.|..+.|...|.-+
T Consensus 613 t~~v~~a--~~l~myni~I~kaae~yG-v~~TR~iYekaIe~L-----p~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 613 TSAVKEA--QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESL-----PDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HhcCCHH--HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhC-----ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 5433221 1111111111 111 233455666666631 11223345555666777777777777777776
Q ss_pred hccCCCch
Q 008705 543 LDYTGPVS 550 (557)
Q Consensus 543 l~~~~~~~ 550 (557)
-++.+|..
T Consensus 685 sq~~dPr~ 692 (835)
T KOG2047|consen 685 SQICDPRV 692 (835)
T ss_pred hhcCCCcC
Confidence 66655543
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.53 E-value=1.3e-12 Score=135.62 Aligned_cols=225 Identities=14% Similarity=0.096 Sum_probs=193.0
Q ss_pred hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH
Q 008705 263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI 342 (557)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (557)
...|.+..++..++..+...+++++|+..++..++..|+....+...+.++...+....+..+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~ 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL----------------N 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh----------------h
Confidence 357889999999999999999999999999999999999999999999988877775554333 3
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
++.......++ .++.++...+...+.+..+++.+|.+|-.+|+.++|...|+++++.+|+++.+..++|..|... +.+
T Consensus 89 ~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 45555555666 6777777777778888899999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH--------------------HHHHH
Q 008705 423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA--------------------LNQLA 482 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------~~~la 482 (557)
+|+.++.+|+.. +.. .+++.++..++.+.+..+|.+... +.-+-
T Consensus 167 KA~~m~~KAV~~--------------~i~--~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR--------------FIK--KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH--------------HHh--hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999999999976 555 778889999999998888876543 22223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705 483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 528 (557)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 528 (557)
..|...+++++++.+++.+++ ..|.+..+...++.+|..
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~-------~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILE-------HDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHh-------cCCcchhhHHHHHHHHHH
Confidence 678888899999999999999 789999999999999983
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.52 E-value=2.2e-12 Score=133.27 Aligned_cols=139 Identities=10% Similarity=0.004 Sum_probs=124.8
Q ss_pred HhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 008705 364 LKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI 443 (557)
Q Consensus 364 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 443 (557)
....|.+..++.++|.+....|.+++|...++.++++.|++..++..++.++.+++++++|+..+++++...|+++..++
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34467788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 444 AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 444 ~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
.+|.++.. .|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++.
T Consensus 159 ~~a~~l~~--~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDE--IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHH--hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998 999999999999999888888899999999999999999999999999884
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.52 E-value=2.2e-12 Score=133.25 Aligned_cols=195 Identities=16% Similarity=0.086 Sum_probs=159.7
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHH-HHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVY-FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
.|.....+-......|+.++|-.- ..++-+ +...-|.+. ...+++.-........|.+..++..||.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~La~i 95 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------VLERHAAVH----KPAAALPELLDYVRRYPHTELFQVLVARA 95 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------HHHHhhhhc----chHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 444555555566666666665432 222211 111122222 23334444444455678899999999999
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
....|.+++|...++.++++.|++..++..++.++.+ .+++++|+..+++++..+|+++.+++.+|.++.+.|++++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~--~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR--QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
..+|++++. ..|+.+.++..+|.++...|+.++|...|+++++...+..
T Consensus 174 ~~~y~~~~~-------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 174 DACFERLSR-------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 999999998 6899999999999999999999999999999999876544
No 113
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.52 E-value=3.7e-13 Score=125.07 Aligned_cols=258 Identities=12% Similarity=0.054 Sum_probs=186.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
..-++-.|+|..++..++ .....+. .......+.+++..+|+++.++.-... ..+....+...++..+...++.+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 556777899999997777 3233332 455678889999999998866544322 22333444555655554434444
Q ss_pred HHHHHHHHHHhhC--CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705 321 ALSYLAHRVFMTD--KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398 (557)
Q Consensus 321 ~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 398 (557)
....-+...+... +.++.+....|.++...|++++|++.+.+. .+.+.......+++.+++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444443333222 234556677788999999999999888754 567888888999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHhC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 399 DINPRDYRAWYGLGQAYEMMH--MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
+.+.+..-+....+++....| .+.+|...|++.....+.++..++.++.++.. +|++++|...+++++..+|+++.
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~--~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ--LGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH--CT-HHHHHHHHHHHCCC-CCHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhccCCHH
Confidence 888776666666666666666 69999999999988888899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhhhcCCcchHH
Q 008705 477 ALNQLAKLHHALGRD-EEAAFYYKKDLERMEAEEREGPNMVE 517 (557)
Q Consensus 477 ~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~ 517 (557)
++.+++.+....|+. +.+.+++.+... ..|+++.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~-------~~p~h~~ 271 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ-------SNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH-------HTTTSHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH-------hCCCChH
Confidence 999999999999998 556667766655 4676554
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=6.2e-13 Score=110.57 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=96.0
Q ss_pred HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705 358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 437 (557)
..|++++..+|++..+.+.+|..+...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.++++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 438 ~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
++..++.+|.++.. .|++++|+..|+++++.+|++..
T Consensus 84 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLA--LGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhccccch
Confidence 88888888888888 88888888888888888877655
No 115
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=9.3e-10 Score=106.68 Aligned_cols=392 Identities=16% Similarity=0.136 Sum_probs=260.3
Q ss_pred hhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhh-------cCCCCChhHHHHHHHHHHhcCChH-
Q 008705 122 VFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSW-------KNGTVDPFGLYLYGIVLKDKGNEN- 193 (557)
Q Consensus 122 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~g~~~~~~g~~~- 193 (557)
.-++.|.+|+.-.....++.++.+...+ .+.++.+.+...+ +.++.+-..|..+-....+.-+.-
T Consensus 156 ts~rvyrRYLk~~P~~~eeyie~L~~~d-------~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~ 228 (835)
T KOG2047|consen 156 TSIRVYRRYLKVAPEAREEYIEYLAKSD-------RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ 228 (835)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcc-------chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc
Confidence 4567788888887777777776643333 3344444444432 334555555555555544433221
Q ss_pred --HHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC---CC
Q 008705 194 --LARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS---FS 268 (557)
Q Consensus 194 --~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~ 268 (557)
.--.+++..+...|+.+.. ....+|..|.+.|.+++|...|++++..-- +.
T Consensus 229 slnvdaiiR~gi~rftDq~g~------------------------Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF 284 (835)
T KOG2047|consen 229 SLNVDAIIRGGIRRFTDQLGF------------------------LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF 284 (835)
T ss_pred ccCHHHHHHhhcccCcHHHHH------------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH
Confidence 1223445555555554431 122358888999999999999888876422 21
Q ss_pred HHH-----HHHHHHHHHhcc-------------cHHHHHHHHHHHHHh------------CCCCCCcHHHHHHHHHhccc
Q 008705 269 NYI-----QAQIAKAQYSLR-------------EFEQVEVIFEELLRN------------DPYRVDDMDMYSNVLYAKEC 318 (557)
Q Consensus 269 ~~~-----~~~la~~~~~~g-------------~~~~A~~~~~~~l~~------------~p~~~~~~~~~~~~~~~~~~ 318 (557)
..+ .+.-..+...++ +.+-....|+.++.. +|++.+.|.... -...++
T Consensus 285 t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~ 362 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGN 362 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCC
Confidence 111 111111111111 233344555555544 444444333322 223344
Q ss_pred hhHHHHHHHH-HHhhCCCC-----hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC----HHHHHHHhHHHHhcCCch
Q 008705 319 FSALSYLAHR-VFMTDKYR-----PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTLMGHEYVEMKNTP 388 (557)
Q Consensus 319 ~~~~~~~~~~-~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~ 388 (557)
..+....+.. +...+|.. ...|+..|..|...|+.+.|...|+++++.+-.. ..+|...|..-+...+++
T Consensus 363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence 4444444444 44456653 3578999999999999999999999999876332 567889999999999999
Q ss_pred HHHHHHHHHHhhCCC------------------ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 389 AAIDAYRRAVDINPR------------------DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 389 ~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
.|+++.++|...-.. +..+|...+......|-++.....|++.+.+.--.|.+..+.|..+.
T Consensus 443 ~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 443 AALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred HHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999998765322 25678888999999999999999999999999899999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhhhcCCcchHH-HHHHHHH
Q 008705 451 TEQLHMLEEAIKCYRRAANCN--DSEAIALNQLAKLHH---ALGRDEEAAFYYKKDLERMEAEEREGPNMVE-ALIFLAT 524 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~la~ 524 (557)
. ..-++++.+.|++.+.+. |...++|...-..+. .-...+.|...|+++++. ..|.++. +++..|.
T Consensus 523 e--h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~------Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 523 E--HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG------CPPEHAKTIYLLYAK 594 (835)
T ss_pred h--hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHH
Confidence 9 999999999999999885 455555554333322 234789999999999993 4455554 5566788
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705 525 HCRAHGRFEEAEVYCTRLLDYTGPVSFTHL 554 (557)
Q Consensus 525 ~~~~~g~~~~A~~~~~~al~~~~~~~~~a~ 554 (557)
...+.|--..|+..|+++...-++...-.+
T Consensus 595 lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 888899999999999998876555444333
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.4e-12 Score=108.41 Aligned_cols=118 Identities=23% Similarity=0.266 Sum_probs=112.0
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
+.|++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+.++++++..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM--LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence 468899999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHH
Q 008705 472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 518 (557)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 518 (557)
|.++..++.+|.++...|++++|+..|+++++ ..|++...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~ 121 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE-------ICGENPEY 121 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hccccchH
Confidence 99999999999999999999999999999999 56766553
No 117
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=116.05 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=72.6
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
+.+-.-|+-....++|++|+..|.+|++++|+++..|.+.+.+|.++|.++.|++.++.++.++|...++|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34444555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
+|++++|+..|++++.++|++...+.+|..+-..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 6666666666666666666666666555555554
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.46 E-value=3e-12 Score=103.99 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=94.4
Q ss_pred HhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705 364 LKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW 442 (557)
Q Consensus 364 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 442 (557)
..+. ++..+..+.+|..+...|++++|...|+-...++|.+...|++||.++..+|++++|+..|.+++.++|++++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 443 IAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
++.|.|+.. .|+.+.|.+.|+.++...
T Consensus 107 ~~ag~c~L~--lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLA--CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHh
Confidence 999999999 999999999999988875
No 119
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.2e-12 Score=114.24 Aligned_cols=119 Identities=18% Similarity=0.288 Sum_probs=109.4
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
+-+-.-|.-+++.++|.+|+..|.+||+++|+++..|.+.+.+|.++|+++.|++.++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH
Q 008705 452 EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 492 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 492 (557)
+|++++|++.|++++.++|++.....+|..+-.+++...
T Consensus 162 --~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 --LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999988888877766
No 120
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.43 E-value=6.7e-12 Score=116.71 Aligned_cols=232 Identities=16% Similarity=0.098 Sum_probs=137.1
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhh
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSW 169 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 169 (557)
.+..+.++++|+..|+|+..+.-+....++....++.++.|+.....+.....+ ++...
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~---------------------l~~~~ 93 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE---------------------LKELL 93 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH---------------------HHHCC
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH---------------------HHHHH
Confidence 456667788888888888887777666666666777777777664322222211 21111
Q ss_pred c--CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705 170 K--NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE 247 (557)
Q Consensus 170 ~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~ 247 (557)
. ..+.++......|.++...|++++|++.+.+. .+.++.. ....+++.
T Consensus 94 ~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~a-------------------------l~Vqi~L~ 143 (290)
T PF04733_consen 94 ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLA-------------------------LAVQILLK 143 (290)
T ss_dssp CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHH-------------------------HHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHH-------------------------HHHHHHHH
Confidence 1 12345566677777777788888887777654 3333322 23667777
Q ss_pred HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHH
Q 008705 248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR--EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL 325 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (557)
.++++.|.+.++.+.+.+.++.-+....|++....| .+.+|..+|+++....+.
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------------------------ 199 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------------------------ 199 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------------------------
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------------------------
Confidence 777777777777777666665555555555555544 366666666665443332
Q ss_pred HHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCc-hHHHHHHHHHHhhCCCC
Q 008705 326 AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNT-PAAIDAYRRAVDINPRD 404 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~ 404 (557)
.+.++..++.++...|++++|...+++++..+|+++.++.+++.+....|+. +.+.+++.+....+|.+
T Consensus 200 ----------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 200 ----------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp ----------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred ----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 3445555666666677777777777777666666666666666666666666 44445555555566655
Q ss_pred hH
Q 008705 405 YR 406 (557)
Q Consensus 405 ~~ 406 (557)
+.
T Consensus 270 ~~ 271 (290)
T PF04733_consen 270 PL 271 (290)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 121
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.43 E-value=8.6e-12 Score=101.37 Aligned_cols=107 Identities=17% Similarity=0.096 Sum_probs=101.9
Q ss_pred HHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 397 AVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 397 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
...+. ++..+..+.+|..+...|++++|...|+-...++|.+...|+++|.++.. +|++++|+.+|.+++.++|+++
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~--~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA--QKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCc
Confidence 44566 77888999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDLERM 505 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (557)
..++++|.++...|+.+.|.+.|+.++..+
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999954
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.5e-10 Score=101.79 Aligned_cols=282 Identities=13% Similarity=0.029 Sum_probs=212.3
Q ss_pred HHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHH
Q 008705 246 QELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL 325 (557)
Q Consensus 246 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (557)
.+..+|.+|++++..-.+..|.+...+..+|.||+...+|..|..+|+++-...|.........+..++..+.+..+...
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999888888889999999999888888
Q ss_pred HHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh
Q 008705 326 AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY 405 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (557)
+..+...+....+..-.-+-+.+..+++..+....++.-. .+......+.|.+.++.|++++|++-|+.+++...-.+
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 7776555444445555667777788888888777665321 25677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhc----CCCC-------------------------HHHHHHHHHHHhHHhcCc
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFL----QPND-------------------------SRLWIAMAQCYETEQLHM 456 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~-------------------------~~~~~~l~~~~~~~~~~~ 456 (557)
..-++++.++++.|++..|+++..+.++. .|.- ..+++..+.++.+ .|+
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq--~~n 256 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ--LRN 256 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh--ccc
Confidence 99999999999999999999998887754 3321 1345566777788 899
Q ss_pred HHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH
Q 008705 457 LEEAIKCYRRAANCN--DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE 534 (557)
Q Consensus 457 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 534 (557)
++.|.+.+...--.. .-+|..+.++|..-. .+++-+..+-+.-.+. ..|--++.+-++-.+|.+..-|+.
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~-------~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQ-------QNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHh-------cCCCChHHHHHHHHHHhhhHHHhH
Confidence 988877654321111 123556666664433 2344444444444454 455555566666666666655555
Q ss_pred HHHHH
Q 008705 535 AEVYC 539 (557)
Q Consensus 535 A~~~~ 539 (557)
|...+
T Consensus 329 AADvL 333 (459)
T KOG4340|consen 329 AADVL 333 (459)
T ss_pred HHHHH
Confidence 55443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.37 E-value=1.7e-10 Score=109.01 Aligned_cols=126 Identities=18% Similarity=0.113 Sum_probs=68.1
Q ss_pred cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447 (557)
Q Consensus 368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 447 (557)
|....+++..+..++..|++++|...++..+...|+|+..+...+.++...++..+|.+.+++++.+.|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705 448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495 (557)
Q Consensus 448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 495 (557)
++.+ .|++.+|+..++..+..+|+++..|..||..|..+|+..+|.
T Consensus 383 all~--~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 383 ALLK--GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHh--cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 5555 555555555555555555555555555555555555444443
No 124
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.36 E-value=5.8e-10 Score=100.81 Aligned_cols=315 Identities=18% Similarity=0.139 Sum_probs=231.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
+.-....|.-++...++++|+..+.+.+..-.+..+-+..++ .+..+..+.|.|++++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG----------------------~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLG----------------------CLVTAHSEMGRYKEML 63 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------cchhhhhhhHHHHHHH
Confidence 344677888999999999999999999876554444333332 2356677788887776
Q ss_pred HHHHHHHhcCCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705 256 TKYEYLQGTFSF------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV 329 (557)
Q Consensus 256 ~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (557)
..--..++...+ --+++..+++.+...-++.+++.+-+..+.....++.
T Consensus 64 ~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~------------------------- 118 (518)
T KOG1941|consen 64 KFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG------------------------- 118 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc-------------------------
Confidence 554443332211 2346778888888888999998888877776443321
Q ss_pred HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705 330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403 (557)
Q Consensus 330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 403 (557)
..-......+|+.+...+.++++++.|++|++...+. ..++..+|..|...+++++|.-+..+|.++...
T Consensus 119 ----~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 119 ----QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred ----cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 1122455568999999999999999999999874332 356889999999999999999999999886432
Q ss_pred ----C------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 404 ----D------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 404 ----~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
+ ..+++.++..+..+|....|.++++++.++. +........+|.+|.. .|+.+.|..-|++|
T Consensus 195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~--~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS--RGDLERAFRRYEQA 272 (518)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh--cccHhHHHHHHHHH
Confidence 2 3467889999999999999999999998763 3446678889999999 99999999999999
Q ss_pred HhcCC------ChHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705 468 ANCND------SEAIALNQLAKLHHALGRDEE-----AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAE 536 (557)
Q Consensus 468 l~~~p------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 536 (557)
..... ....++...|.++....-..+ |++.-+++++.... .+..-.....+..++.+|..+|.-++=.
T Consensus 273 m~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~-IG~K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 273 MGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS-IGAKLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhccchhHHH
Confidence 86532 124467777777765544444 88888888884332 2233445678888999999999888777
Q ss_pred HHHHHHhc
Q 008705 537 VYCTRLLD 544 (557)
Q Consensus 537 ~~~~~al~ 544 (557)
..+.++-+
T Consensus 352 ~h~~ra~~ 359 (518)
T KOG1941|consen 352 AHVVRAHE 359 (518)
T ss_pred HHHHHHHH
Confidence 77766544
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=4.6e-10 Score=106.06 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=142.0
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
|..+..++-.+..++..|++++|+..++..+...|+++..+...+.++++.++.++|.+.+++++..+|.....+.++|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 493 (557)
++.+.|++.+|+..++..+..+|+++..|..++..|.. +|+..+|.. ..|..|...|++++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~--~g~~~~a~~-----------------A~AE~~~~~G~~~~ 443 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE--LGNRAEALL-----------------ARAEGYALAGRLEQ 443 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH--hCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999 998776654 45667788899999
Q ss_pred HHHHHHHHHHH
Q 008705 494 AAFYYKKDLER 504 (557)
Q Consensus 494 A~~~~~~al~~ 504 (557)
|+..+..+.++
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 99999998885
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=3.9e-09 Score=117.10 Aligned_cols=282 Identities=12% Similarity=-0.005 Sum_probs=201.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
......+|.++...|++++|...+++++...|........ .....+|.++...|++++|.
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI--------------------VATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH--------------------HHHHHHHHHHHHcCCHHHHH
Confidence 4566678899999999999999999999865543211110 12234688899999999999
Q ss_pred HHHHHHHhcCCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705 256 TKYEYLQGTFSF------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV 329 (557)
Q Consensus 256 ~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (557)
..+++++..... ....+..+|.++...|++++|...+++++........
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~------------------------- 566 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL------------------------- 566 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 999999865332 1235677899999999999999999999875322100
Q ss_pred HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC
Q 008705 330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404 (557)
Q Consensus 330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (557)
...+.....+..+|.++...|++++|...+.+++..... ...++..+|.++...|++++|...+.++..+.+..
T Consensus 567 -~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 567 -EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred -ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 000001223456788888899999999999998775321 24456678889999999999999999987753322
Q ss_pred ---hHHHH----HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-
Q 008705 405 ---YRAWY----GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKCYRRAANCND- 472 (557)
Q Consensus 405 ---~~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p- 472 (557)
..... .....+...|+.+.|..++.......+.... .+..++.++.. .|++++|...+++++....
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~--~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL--LGQFDEAEIILEELNENARS 723 (903)
T ss_pred cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHH
Confidence 11111 1224455678899998888776553322221 24678888888 9999999999999887521
Q ss_pred -----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705 473 -----SEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 505 (557)
Q Consensus 473 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (557)
....++..+|.++...|+.++|...+.++++..
T Consensus 724 ~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 724 LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 234578889999999999999999999999854
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=8e-11 Score=113.81 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 419 (557)
+...|..++..|++++|+.+|++++.++|++..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
++++|+..|+++++++|+++.+...++.|...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998888888888665
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=8.7e-11 Score=113.57 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=107.4
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 453 (557)
+...|...+..|++++|+..|++++.++|++..+++.+|.++..+|++++|+..+++++.++|.++.+++.+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-- 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-- 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--
Confidence 456688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
+|++++|+..|++++.++|+++.+...++.+...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888886665
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.27 E-value=1.1e-09 Score=97.33 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=125.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
.++..+|..|..++..|++.+|+..|++++...|...-+-... +.+|.++...|++.+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~----------------------l~la~a~y~~~~y~~ 60 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQ----------------------LMLAYAYYKQGDYEE 60 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHH----------------------HHHHHHHHHTT-HHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHH----------------------HHHHHHHHHcCCHHH
Confidence 4577899999999999999999999999999999876443322 567999999999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705 254 SLTKYEYLQGTFSFSN---YIQAQIAKAQYSLR-----------EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319 (557)
Q Consensus 254 A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 319 (557)
|+..+++.+..+|+++ .+++.+|.+++... ...+|+..|+.+++..|+..-+-.....+....
T Consensus 61 A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~--- 137 (203)
T PF13525_consen 61 AIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR--- 137 (203)
T ss_dssp HHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH---
Confidence 9999999999999864 57888888876653 346899999999999998754432221111110
Q ss_pred hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHH
Q 008705 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAA 390 (557)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A 390 (557)
..-..--+.+|..|...|.+..|+..++.+++..|+.. .++..++..|..+|..+.|
T Consensus 138 --------------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 138 --------------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --------------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred --------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 00112234577788888888888888888888777754 4567777777777776644
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.25 E-value=2.4e-09 Score=97.33 Aligned_cols=184 Identities=16% Similarity=0.118 Sum_probs=132.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
..++..+|..|..+...|++++|+..|++++..+|....+.... +.+|.++.+.++++
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~----------------------l~la~ayy~~~~y~ 86 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQ----------------------LDLIYAYYKNADLP 86 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH----------------------HHHHHHHHhcCCHH
Confidence 35678899999999999999999999999999999886554333 56799999999999
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705 253 ESLTKYEYLQGTFSFS---NYIQAQIAKAQYSLR------------------EFEQVEVIFEELLRNDPYRVDDMDMYSN 311 (557)
Q Consensus 253 ~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g------------------~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (557)
+|+..+++.++.+|++ +.+++.+|.++...+ ...+|+..|+++++..|+..-+-.....
T Consensus 87 ~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 87 LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 9999999999998875 567888888864443 1357889999999999976432222111
Q ss_pred HHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCch
Q 008705 312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTP 388 (557)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~ 388 (557)
+.... ..-.+--+.+|..|.+.|.+.-|+.-++.+++..|+. .+++..++..|..+|..+
T Consensus 167 l~~l~-----------------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~ 229 (243)
T PRK10866 167 LVFLK-----------------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA 229 (243)
T ss_pred HHHHH-----------------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence 11100 0011223356777777777777777777777766653 455666777777777777
Q ss_pred HHHHHHH
Q 008705 389 AAIDAYR 395 (557)
Q Consensus 389 ~A~~~~~ 395 (557)
+|.....
T Consensus 230 ~a~~~~~ 236 (243)
T PRK10866 230 QADKVAK 236 (243)
T ss_pred HHHHHHH
Confidence 7665544
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.21 E-value=4.2e-09 Score=95.72 Aligned_cols=164 Identities=15% Similarity=0.048 Sum_probs=139.2
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHH---HHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSA---WTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWY 409 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 409 (557)
.+..++..|..+...|++++|+..|++++...|....+ .+.+|.++.+.+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56778889999999999999999999999999987655 4889999999999999999999999999887 55688
Q ss_pred HHHHHHHHhC---------------C---hHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHhHHhc
Q 008705 410 GLGQAYEMMH---------------M---PLYALHYFRKSVFLQPNDSR-----------------LWIAMAQCYETEQL 454 (557)
Q Consensus 410 ~l~~~~~~~~---------------~---~~~A~~~~~~a~~~~p~~~~-----------------~~~~l~~~~~~~~~ 454 (557)
.+|.++...+ + ..+|+..|++.++..|++.. --+.+|..|.+ .
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~--~ 188 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK--R 188 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c
Confidence 8888764443 1 24688999999999998742 12456888999 9
Q ss_pred CcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 455 HMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKD 501 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (557)
|.|..|+.-++.+++..|+. .+++..++..|..+|..++|..+....
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999988765 569999999999999999998876554
No 132
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.17 E-value=9.7e-09 Score=96.43 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=117.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh-Cc
Q 008705 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK-GQ 352 (557)
Q Consensus 274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~ 352 (557)
..+.++... ++++|+.+|++++.+. ...|+...+. ..+..+|.+|... |+
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y--------------~~~G~~~~aA--------------~~~~~lA~~ye~~~~d 130 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIY--------------REAGRFSQAA--------------KCLKELAEIYEEQLGD 130 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHH--------------HHCT-HHHHH--------------HHHHHHHHHHCCTT--
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHH--------------HhcCcHHHHH--------------HHHHHHHHHHHHHcCC
Confidence 334444444 8888888888887542 2333333332 3455689999998 99
Q ss_pred hHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHhC
Q 008705 353 HEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-------YRAWYGLGQAYEMMH 419 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~ 419 (557)
+++|+.+|++|+++.... ...+..+|.++...|+|++|++.|+++....-++ ...+...+.++...|
T Consensus 131 ~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~ 210 (282)
T PF14938_consen 131 YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG 210 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC
Confidence 999999999999874221 3456789999999999999999999998753221 234567788999999
Q ss_pred ChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 420 MPLYALHYFRKSVFLQPND-----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~-----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
++..|...+++....+|.. ..+...+-.++..+....+++|+.-|.+...+++-
T Consensus 211 D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 211 DYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp -HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 9999999999999888754 33555566666554466788888888877666553
No 133
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.17 E-value=2.2e-09 Score=90.26 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=150.9
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY 415 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 415 (557)
++..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHH--HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705 416 EMMHMPLYALHYFRKSVFLQPNDSR--LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 493 (557)
.--|++.-|..-+.+-.+-+|+||- .|..+-. . .-++.+|...+.+-.+......+.+...... +|+..+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~--k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y---LgkiS~ 215 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---Q--KLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY---LGKISE 215 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---h--hCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---HhhccH
Confidence 9999999999999999999999975 3333321 2 4567777765544333333333333222221 222211
Q ss_pred HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
...++++..-............+.++.+|+.+...|+.++|...|+-++..+
T Consensus 216 -e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 216 -ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1223333331000000122346789999999999999999999999888754
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.17 E-value=4.1e-09 Score=93.57 Aligned_cols=176 Identities=20% Similarity=0.226 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705 269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS 348 (557)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 348 (557)
+..++..|..++..|+|.+|+..|++++...|.. +..+.+.+.+|.+++
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-------------------------------~~a~~A~l~la~a~y 53 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-------------------------------PYAPQAQLMLAYAYY 53 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-------------------------------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------------------------------hHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666555543 223444555555566
Q ss_pred hhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhc-----------CCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEM-----------KNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
..|+++.|+..+++.++..|+++ .+++.+|.+++.. +...+|+..|+..+...|++..+-.
T Consensus 54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~----- 128 (203)
T PF13525_consen 54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE----- 128 (203)
T ss_dssp HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH-----
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH-----
Confidence 66666666666666555555543 3455555544332 2234566666666666665532211
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHcCCH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLHHALGRD 491 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~ 491 (557)
|...+..+-. .-..--+.+|..|.+ .|.+..|+..++.+++..|+.+ .++..++..|.++|..
T Consensus 129 ---------A~~~l~~l~~---~la~~e~~ia~~Y~~--~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 129 ---------AKKRLAELRN---RLAEHELYIARFYYK--RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp ---------HHHHHHHHHH---HHHHHHHHHHHHHHC--TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred ---------HHHHHHHHHH---HHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 0000000000 001122445666666 6666666666666666666542 3566666666666666
Q ss_pred HHH
Q 008705 492 EEA 494 (557)
Q Consensus 492 ~~A 494 (557)
+.|
T Consensus 195 ~~a 197 (203)
T PF13525_consen 195 QAA 197 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 633
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=1e-09 Score=88.90 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGL 411 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 411 (557)
++++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344555555555666666666666655555543 3455555555555566666666665555555543 3455555
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSR 440 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 440 (557)
|.++...|++++|+.++++++...|++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55555555555555555555555555543
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.5e-09 Score=97.26 Aligned_cols=120 Identities=23% Similarity=0.268 Sum_probs=107.8
Q ss_pred CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh-cCcHHHHHHH
Q 008705 385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ-LHMLEEAIKC 463 (557)
Q Consensus 385 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~~~A~~~ 463 (557)
...+.-+.-++.-+..+|+|.+.|..||.+|..+|++..|...|.+++++.|+++..+..+|.++.... .....++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 346778888899999999999999999999999999999999999999999999999999999887611 2246689999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
+++++..+|.+..+++.||..++..|++.+|+..++..++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999984
No 137
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.14 E-value=1.1e-09 Score=102.71 Aligned_cols=168 Identities=22% Similarity=0.224 Sum_probs=111.6
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCC--C----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CC----HHHHHHH
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPR--D----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--ND----SRLWIAM 445 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~l 445 (557)
|..|...|++++|.++|.++....-. + ...+...+.+|... ++++|+.+|++++.+.- .+ ..++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44555555666666666555443211 1 23344455555444 77777777777776531 11 4467888
Q ss_pred HHHHhHHhc-CcHHHHHHHHHHHHhcCCC--h----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHH
Q 008705 446 AQCYETEQL-HMLEEAIKCYRRAANCNDS--E----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 518 (557)
Q Consensus 446 ~~~~~~~~~-~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 518 (557)
|.+|.. . |++++|+++|++|+.+... . ..++..+|.++...|+|++|+..|+++.................
T Consensus 121 A~~ye~--~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 121 AEIYEE--QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHCC--TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHH--HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 999988 8 8999999999999886321 1 34788999999999999999999999887321111112233456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 519 LIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 519 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
++..+.|++..|+...|...+++....+|.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 677889999999999999999999988763
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.14 E-value=1.6e-09 Score=93.42 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
...|+.+|.++...|++++|+..|++++.+.|+. +.++.++|.++.. .|++++|+.++++++.+.|.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~--~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS--NGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 4445566666666666666666666666554432 2356666666666 6666666666666666666666655555
Q ss_pred HHHHH-------HcCCHHHHHHHHHHHHHHHHhhhcCCcc
Q 008705 482 AKLHH-------ALGRDEEAAFYYKKDLERMEAEEREGPN 514 (557)
Q Consensus 482 a~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~ 514 (557)
|.++. ..|++++|...+++++.......+..|.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 55555 6677776666666666544443335553
No 139
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.8e-09 Score=96.80 Aligned_cols=121 Identities=19% Similarity=0.268 Sum_probs=95.5
Q ss_pred chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC---ChHHHHHHH
Q 008705 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH---MPLYALHYF 428 (557)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~ 428 (557)
..+.-+.-++.-+..+|++.+-|..+|.+|+..|++..|...|++++++.|+++..+..+|.++..+. +..++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35566666777777788888888888888888888888888888888888888888888888776543 346788888
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 429 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
++++..+|.+..+...+|..++. .|+|.+|+..++..+...|.+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe--~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFE--QGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhcCCCC
Confidence 88888888888888888888888 888888888888888876654
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.13 E-value=1.3e-09 Score=88.25 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=89.1
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIA 444 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 444 (557)
+.+++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|+++.|+.+|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3567888888889999999999999998888766 5678888999999999999999999988887775 567888
Q ss_pred HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
+|.++.. .|++++|+.++++++...|++..+.
T Consensus 82 ~~~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQE--LGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHH--hCChHHHHHHHHHHHHHCcCChhHH
Confidence 8889888 8999999999999988888876544
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=6.7e-08 Score=84.36 Aligned_cols=259 Identities=17% Similarity=0.112 Sum_probs=187.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705 240 FLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319 (557)
Q Consensus 240 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 319 (557)
|-..-++-.|+|..++..-.+.-... ........+++.|..+|++...+.-....- .....+...++.++...+..
T Consensus 13 F~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 13 FNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchh
Confidence 34566777899999888777764433 677888889999999998775544333221 11123334444444444444
Q ss_pred hHHH-HHHHHHHhh-CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705 320 SALS-YLAHRVFMT-DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397 (557)
Q Consensus 320 ~~~~-~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 397 (557)
+... .+.+.+... ...+......-|.+|...|++++|++...+. .+.++...-..++.++.+++-|...++++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 333332222 2333345556678899999999999888763 34566777778899999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 398 VDINPRDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 398 l~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
.+++.+ .++..||.++.. .++..+|..+|+..-+..|..+......+.|... +|++++|...++.++..+++
T Consensus 164 q~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~--~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ--LGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH--hcCHHHHHHHHHHHHhccCC
Confidence 988754 344455555543 3568899999999999888889999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHH
Q 008705 474 EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE 517 (557)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 517 (557)
+++++.++..+-...|...++..-+-.-+.. .+|+++-
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~------~~p~h~~ 277 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL------SHPEHPF 277 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh------cCCcchH
Confidence 9999999999999999987776655444442 5666654
No 142
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.12 E-value=1.2e-08 Score=92.56 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=200.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFS---NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE 317 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 317 (557)
.|.-++...++.+|+....+.+..-.+. ...+-.+..++..+|.|++++..--..+....+..+.
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds------------ 79 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS------------ 79 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 4666777788888888888777653332 2234455667778888887766544433322211110
Q ss_pred chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC-----HHHHHHHhHHHHhcCCchHHHH
Q 008705 318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY-----LSAWTLMGHEYVEMKNTPAAID 392 (557)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~ 392 (557)
...-+++..++..+....++.+++.+-+..+.+.... ..+...+|..+..++.++++++
T Consensus 80 ----------------~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le 143 (518)
T KOG1941|consen 80 ----------------DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE 143 (518)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence 0123567788999999999999999988887764332 3567789999999999999999
Q ss_pred HHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHhHHhcCc
Q 008705 393 AYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN----D------SRLWIAMAQCYETEQLHM 456 (557)
Q Consensus 393 ~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~------~~~~~~l~~~~~~~~~~~ 456 (557)
.|+.|+.+...+ ..++..||..+..+.++++|+.+..++.++... + ..+++.++..+.. .|+
T Consensus 144 sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~--~G~ 221 (518)
T KOG1941|consen 144 SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL--LGR 221 (518)
T ss_pred HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH--hcc
Confidence 999999875433 457889999999999999999999999876432 2 2366788999999 999
Q ss_pred HHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705 457 LEEAIKCYRRAANCN------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530 (557)
Q Consensus 457 ~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 530 (557)
..+|.++.+++.++. +-....+.-+|.+|...|+.+.|..-|+.+...... .+..-....++...|++.....
T Consensus 222 LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~-~gdrmgqv~al~g~Akc~~~~r 300 (518)
T KOG1941|consen 222 LGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS-LGDRMGQVEALDGAAKCLETLR 300 (518)
T ss_pred cccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999987763 233457788999999999999999999999874332 2233445667777777776555
Q ss_pred CHHH-----HHHHHHHHhccC
Q 008705 531 RFEE-----AEVYCTRLLDYT 546 (557)
Q Consensus 531 ~~~~-----A~~~~~~al~~~ 546 (557)
-..+ |+++-++++++.
T Consensus 301 ~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 301 LQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HhhcccccchhHHHHHHHHHH
Confidence 4444 888777777653
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.09 E-value=5.1e-09 Score=105.40 Aligned_cols=133 Identities=15% Similarity=0.042 Sum_probs=110.5
Q ss_pred HHHHHHHhhhC---chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC--------CchHHHHHHHHHHhh--CCCChHH
Q 008705 341 CIIGNYYSLKG---QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK--------NTPAAIDAYRRAVDI--NPRDYRA 407 (557)
Q Consensus 341 ~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~--~p~~~~~ 407 (557)
+..|..+...+ ++.+|+.+|+++++++|++..++..++.++.... +...+....++++.+ +|.++.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 45566665443 4789999999999999999999988888775542 234556666666553 7777888
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
+..+|..+...|++++|...+++++.++| +..+|..+|.++.. .|++++|+..|++|+.++|.++.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~--~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL--KGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999 58899999999999 99999999999999999999875
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=3.2e-09 Score=91.57 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHhcCcCC--HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHH
Q 008705 353 HEKSVVYFRRALKLDKNY--LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHY 427 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~ 427 (557)
+..+...+...++.++.. ...++.+|.++...|++++|+..|++++.+.|+. ..++.++|.++...|++++|+.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444333 4456677777777777777777777777665542 34677777777777777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHh-------HHhcCcHH-------HHHHHHHHHHhcCCCh
Q 008705 428 FRKSVFLQPNDSRLWIAMAQCYE-------TEQLHMLE-------EAIKCYRRAANCNDSE 474 (557)
Q Consensus 428 ~~~a~~~~p~~~~~~~~l~~~~~-------~~~~~~~~-------~A~~~~~~al~~~p~~ 474 (557)
|++++.+.|.....+..+|.++. . .|+++ +|+.+|++++..+|.+
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~--~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIE--QGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH--cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 77777777777777777776666 5 55655 5555666666666644
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=1.8e-09 Score=83.43 Aligned_cols=96 Identities=24% Similarity=0.469 Sum_probs=45.4
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 453 (557)
++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.+|++++...|.+..++..+|.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-- 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH--
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cCcHHHHHHHHHHHHhcC
Q 008705 454 LHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~~ 471 (557)
.|++++|...+.+++...
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 444444444444444433
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.09 E-value=2e-09 Score=93.15 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=62.0
Q ss_pred CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
...+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.++++++...|.++..+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34456666777777777777777777776665542 345666666666666666666666666666666666666666
Q ss_pred HHHhHHhcCcHHHHHHHHHHH
Q 008705 447 QCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~a 467 (557)
.++.. .|+...+...++++
T Consensus 114 ~~~~~--~g~~~~a~~~~~~A 132 (172)
T PRK02603 114 VIYHK--RGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHH--cCChHhHhhCHHHH
Confidence 66666 66666655554444
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.09 E-value=1.6e-09 Score=83.74 Aligned_cols=99 Identities=27% Similarity=0.521 Sum_probs=93.7
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM 418 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 418 (557)
+++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 008705 419 HMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 419 ~~~~~A~~~~~~a~~~~p~ 437 (557)
|+++.|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=99.08 E-value=2.6e-09 Score=87.37 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=97.0
Q ss_pred HHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705 363 ALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW 442 (557)
Q Consensus 363 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 442 (557)
+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|.+||.++..+++|++|+..|..+..++++||...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33445566677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 443 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
+..|.|+.. +|+.+.|+.+|+.++. .|.+.
T Consensus 109 f~agqC~l~--l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 109 FFTGQCQLL--MRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred chHHHHHHH--hCCHHHHHHHHHHHHh-CcchH
Confidence 999999999 9999999999999988 35443
No 149
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.08 E-value=2.3e-08 Score=105.21 Aligned_cols=210 Identities=16% Similarity=0.121 Sum_probs=156.9
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc-CcC----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC
Q 008705 327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL-DKN----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN 401 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 401 (557)
.+.+..+|+..-.|......+...++.++|.+.+++||.. ++. -...|..+-+....-|.-+.-.+.|++|.+..
T Consensus 1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC 1527 (1710)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc
Confidence 4445556677777777777777888888888888888764 222 23456655555556666666677777777755
Q ss_pred CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--hHHHHH
Q 008705 402 PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIALN 479 (557)
Q Consensus 402 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~ 479 (557)
. ....+..|..+|...+++++|.++|+.+++...+...+|..+|..++. .++-+.|...+.+|++.-|. +.....
T Consensus 1528 d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~--~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1528 D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR--QNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc--ccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 3 456677778888888888888888888888777777788888888887 77778888888888887776 667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 480 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
..|.+-++.|+.+.+...|+-.+. ..|...+.|.-+...-.++|+.+.+...|++++.+.
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~-------ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLS-------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHh-------hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 788888888888888888888777 677788888888888888888888888888887764
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=5.3e-10 Score=80.35 Aligned_cols=66 Identities=27% Similarity=0.590 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC-CchHHHHHHHHHHhhCC
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK-NTPAAIDAYRRAVDINP 402 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p 402 (557)
+.+|..+|.++...|++++|+.+|+++++++|+++.+|+.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555554
No 151
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.08 E-value=7.8e-07 Score=81.79 Aligned_cols=221 Identities=25% Similarity=0.261 Sum_probs=173.3
Q ss_pred hhhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705 249 RMHKESLTKYEYLQGTFSF--SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (557)
+.+..+...+...+...+. ........+..+...+++..+...+...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 88 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL---------------------------- 88 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------------------------
Confidence 4555566666666655554 2555666666666666666666666666542
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhH-HHHhcCCchHHHHHHHHHHhhCC---
Q 008705 327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGH-EYVEMKNTPAAIDAYRRAVDINP--- 402 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p--- 402 (557)
...+.....+...+..+...+++..++..+.+++...+.........+. ++...|+++.|+..+.+++...|
T Consensus 89 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (291)
T COG0457 89 ----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN 164 (291)
T ss_pred ----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 0233456677788888888888999999999999887777666666666 88999999999999999988776
Q ss_pred CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
.........+..+...++++.|+..+.+++...+. ....+..++..+.. .+++++|+..+.+++...|.....+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 242 (291)
T COG0457 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK--LGKYEEALEYYEKALELDPDNAEALYNL 242 (291)
T ss_pred chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH--cccHHHHHHHHHHHHhhCcccHHHHhhH
Confidence 34566667777788889999999999999999988 68889999999999 9999999999999999988877777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 008705 482 AKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~ 503 (557)
+..+...+.++++...+.+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 243 ALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888877789999999999888
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=4.6e-10 Score=80.66 Aligned_cols=65 Identities=29% Similarity=0.562 Sum_probs=31.8
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-ChHHHHHHHHHHHhcCC
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH-MPLYALHYFRKSVFLQP 436 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p 436 (557)
.+|..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344444444444444555555554444444444444444444444444 34444444444444443
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=3.7e-09 Score=91.51 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=102.0
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 410 (557)
+.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+++++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3566778999999999999999999999999887653 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
+|.++...|+...+...+.+++ ..+++|++++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~----------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE----------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH----------------------HHHHHHHHHHHHHHhhCchh
Confidence 9999999999877765555432 34567888888888888776
No 154
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=4.2e-07 Score=85.91 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=72.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCCC------CC--CcHHHHHHH
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL-RNDPY------RV--DDMDMYSNV 312 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~------~~--~~~~~~~~~ 312 (557)
...+....+..-+......+..+..+++..+...+..++..|++.+|.+.+...- ...|. .. -.+..++.|
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 3344445555555555555555555556666666666666666666665554321 11111 00 112344555
Q ss_pred HHhccchhHHHHHHHHHHhh---------C---------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHH
Q 008705 313 LYAKECFSALSYLAHRVFMT---------D---------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAW 374 (557)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~---------~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 374 (557)
.+..+.+.....++.+++.. . ..+-++.++.|..|...|++-.|.++|.++......++..|
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 55555555555555555430 0 01334455556666666666666666666666555556666
Q ss_pred HHHhHHHH
Q 008705 375 TLMGHEYV 382 (557)
Q Consensus 375 ~~l~~~~~ 382 (557)
..++.+.+
T Consensus 373 LRlAEcCi 380 (696)
T KOG2471|consen 373 LRLAECCI 380 (696)
T ss_pred HHHHHHHH
Confidence 65555543
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=8.9e-09 Score=86.67 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=99.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
...+..+|.+|..|-..|-..-|.-.|.+++.+.|.-++++.-| |..+...|+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyL-------------------------G~Yl~~a~~fd 116 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL-------------------------GIYLTQAGNFD 116 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHH-------------------------HHHHHhcccch
Confidence 44577899999999999999999999999999999999888655 99999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Q 008705 253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD 304 (557)
Q Consensus 253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 304 (557)
.|.+.|+..++++|....+....|..++.-|++.-|.+.+.+-.+.+|+++-
T Consensus 117 aa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 117 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999999999998763
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.06 E-value=1.2e-05 Score=81.93 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=150.7
Q ss_pred chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705 155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~ 234 (557)
.+++..+.+.+.++.+..|+.+.+..+.|.++.+.|+.++|..+++..-...+.+......
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~------------------- 82 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF------------------- 82 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH-------------------
Confidence 4567888888999999999999999999999999999999997777665566665544433
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHH-H
Q 008705 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNV-L 313 (557)
Q Consensus 235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~-~ 313 (557)
+-.+|.+++++++|..+|++++..+|. .+..+.+-.+|.+.+.|.+-.+.--+..+..|.++-.......+ +
T Consensus 83 ------l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 83 ------LQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred ------HHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 488999999999999999999999999 88889999999999998877777667777788776554433333 3
Q ss_pred Hhccchh---------HHHHHHHHHHhhC-CCChhH-HHHHHHHHhhhCchHHHHHHHHHH-Hhc-CcCCHHHHHHHhHH
Q 008705 314 YAKECFS---------ALSYLAHRVFMTD-KYRPES-CCIIGNYYSLKGQHEKSVVYFRRA-LKL-DKNYLSAWTLMGHE 380 (557)
Q Consensus 314 ~~~~~~~---------~~~~~~~~~~~~~-~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a-l~~-~p~~~~~~~~l~~~ 380 (557)
......+ -+...++..+... +..... ....-.++...|++++|..++..- .+. .+.+...-...+..
T Consensus 156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl 235 (932)
T KOG2053|consen 156 QSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL 235 (932)
T ss_pred HhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3332222 1233334444443 221111 112223455678888888888432 222 23333333344455
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCC
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRD 404 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~ 404 (557)
+...+++.+-.+...+++..++++
T Consensus 236 lk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 236 LKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHhcChHHHHHHHHHHHHhCCcc
Confidence 555666666666666655555554
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.06 E-value=1.4e-08 Score=85.08 Aligned_cols=117 Identities=17% Similarity=0.085 Sum_probs=83.3
Q ss_pred HhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCC
Q 008705 417 MMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGR 490 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~ 490 (557)
..++...+...+++.+...|+. ..+.+.+|.++.. .|++++|+..|+.++...|+. +.+...+|.++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~--~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE--QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4666777777777777777776 4456667777777 788888888888777766544 3467777888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
+++|+..++... ..+-.+.++..+|.++...|++++|+..|++++
T Consensus 101 ~d~Al~~L~~~~--------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIP--------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhcc--------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888877775532 345556677777888888888888888877764
No 158
>PRK11906 transcriptional regulator; Provisional
Probab=99.06 E-value=9.3e-09 Score=98.05 Aligned_cols=149 Identities=12% Similarity=0.075 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHH---hcCcCCHHHHHHHhHHHHhc---------CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705 352 QHEKSVVYFRRAL---KLDKNYLSAWTLMGHEYVEM---------KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419 (557)
Q Consensus 352 ~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 419 (557)
..+.|+.+|.+++ .++|.+..++-.++.++... ....+|.+.-+++++++|.|+.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567889999999 89999999998888887654 23567889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHcCCHHHHHHHH
Q 008705 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL-HHALGRDEEAAFYY 498 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~ 498 (557)
+++.|+..|++++.++|+.+.+|+..|.+... .|+.++|++.++++++++|....+-...-++ .+-....+.|+..|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~--~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFH--NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 99999999999999999999999999999999 9999999999999999999875543333333 33445678888877
Q ss_pred HHHH
Q 008705 499 KKDL 502 (557)
Q Consensus 499 ~~al 502 (557)
-+-.
T Consensus 431 ~~~~ 434 (458)
T PRK11906 431 YKET 434 (458)
T ss_pred hhcc
Confidence 6543
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.04 E-value=1.7e-08 Score=84.58 Aligned_cols=117 Identities=19% Similarity=0.095 Sum_probs=82.3
Q ss_pred hcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCc
Q 008705 383 EMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHM 456 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~ 456 (557)
..++...+...++..+..+|+. ..+.+.+|.++...|++++|+..|++++...|+. +.+...++.++.. .|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~--~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ--QGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH--cCC
Confidence 4666777777777777777776 4556667777777777777777777777766544 3356677777777 777
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008705 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL 502 (557)
Q Consensus 457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 502 (557)
+++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 101 ~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 8877777755 23334446677777888888888888877777653
No 160
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=9.9e-07 Score=88.43 Aligned_cols=323 Identities=18% Similarity=0.204 Sum_probs=196.3
Q ss_pred HHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhc
Q 008705 186 LKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQ-ELRMHKESLTKYEYLQGT 264 (557)
Q Consensus 186 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~l~~ 264 (557)
|...|+.+.|.+..+-+ .....|..++..+.....++- |.+++ .+++ ......++++.+
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDV-------------AkVClGhm~~-aRgaRAlR~a~q- 797 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDV-------------AKVCLGHMKN-ARGARALRRAQQ- 797 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccH-------------HHHhhhhhhh-hhhHHHHHHHHh-
Confidence 45578888887765543 234568778776654443322 22222 2222 222334455533
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705 265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344 (557)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 344 (557)
+|+. .-...|.+...+|..++|..+|++.-+. +.+-.++...|.++++..+++.--. -.-..+++..+
T Consensus 798 ~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DR--iHLr~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGEE--DEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDR--IHLRNTYYNYA 865 (1416)
T ss_pred CCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccc--eehhhhHHHHH
Confidence 3322 2233455566777777777777776542 3455566667777777666654111 11234667777
Q ss_pred HHHhhhCchHHHHHHHHHH----------HhcCcC----------CHHHHHHHhHHHHhcCCchHHHHHHHHHHhh----
Q 008705 345 NYYSLKGQHEKSVVYFRRA----------LKLDKN----------YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI---- 400 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~a----------l~~~p~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 400 (557)
..+...++.+.|+++|+++ +.-+|. +...|...|......|+.+.|+.+|..|-+.
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~V 945 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMV 945 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhe
Confidence 7777777778888777764 222332 2344556677777778888888777766442
Q ss_pred -----------------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc------CCCC---HH-----------HHH
Q 008705 401 -----------------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL------QPND---SR-----------LWI 443 (557)
Q Consensus 401 -----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~---~~-----------~~~ 443 (557)
...+..+.|.||..|...|++.+|+.+|.++-.. ..++ .+ -..
T Consensus 946 rI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v 1025 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLV 1025 (1416)
T ss_pred eeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHH
Confidence 2345677889999999999999999999886432 2111 11 122
Q ss_pred HHHHHHhHHhcC-cHHHHHHHHHHH------Hh-----------------cCC-ChHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 444 AMAQCYETEQLH-MLEEAIKCYRRA------AN-----------------CND-SEAIALNQLAKLHHALGRDEEAAFYY 498 (557)
Q Consensus 444 ~l~~~~~~~~~~-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 498 (557)
..+..|.. .| ....|+..|.+| ++ ++| .+|..+..-+..+....+|++|...+
T Consensus 1026 ~aArYyEe--~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1026 SAARYYEE--LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHH--cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23344444 44 666666666543 11 122 46778888889999999999998765
Q ss_pred HH------HHHHHHhhh---------------cCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 499 KK------DLERMEAEE---------------REG---PNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 499 ~~------al~~~~~~~---------------~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
-. ++..+...+ ... .....++..+|.+..++|.|..|-+-|.++
T Consensus 1104 ~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1104 CLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 44 444332210 011 124577888999999999999998888775
No 161
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.04 E-value=5.8e-07 Score=82.66 Aligned_cols=203 Identities=27% Similarity=0.258 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHh--cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH-
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALK--LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ- 413 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~- 413 (557)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+.+.......+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 56677788889999999999999999987 678888999999999999999999999999999988887666666666
Q ss_pred HHHHhCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcC
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQP---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS-EAIALNQLAKLHHALG 489 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g 489 (557)
++...|+++.|...+.+++...| .........+..+.. .++++.|+..+.+++...+. ....+..++..+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA--LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH--hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 89999999999999999988776 345566777777778 89999999999999999999 6899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
++++|...+..++. ..|.....+..++..+...|+++++...+.+++...|.
T Consensus 217 ~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALE-------LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHh-------hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999 56666677788888888888899999999999998764
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=99.03 E-value=6e-09 Score=85.24 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=98.3
Q ss_pred HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
+..+.++..+..+..|.-+...|++++|...|+-..-.+|.+++.|..||.|+.. +++|++|+.+|..+..+++++|.
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~--~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL--KKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcccCCCC
Confidence 3345555677888999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
..+..|.|+..+|+.+.|+.+|+.++.
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999998
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.02 E-value=1.9e-08 Score=101.27 Aligned_cols=143 Identities=17% Similarity=0.035 Sum_probs=118.2
Q ss_pred hcCcCCHHHH--HHHhHHHHhcCC---chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC--------ChHHHHHHHHHH
Q 008705 365 KLDKNYLSAW--TLMGHEYVEMKN---TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH--------MPLYALHYFRKS 431 (557)
Q Consensus 365 ~~~p~~~~~~--~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a 431 (557)
...|.+..+| +..|..+...++ ...|+.+|+++++++|++..++-.++.++.... +...+....+++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456666654 456666665544 779999999999999999999999888886542 234566666676
Q ss_pred Hhc--CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 008705 432 VFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 509 (557)
Q Consensus 432 ~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (557)
+.+ .|.++.++..+|..... .|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~--~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~------ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALV--KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN------ 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------
Confidence 664 77788999999999999 99999999999999999995 78999999999999999999999999999
Q ss_pred cCCcchHH
Q 008705 510 REGPNMVE 517 (557)
Q Consensus 510 ~~~~~~~~ 517 (557)
.+|..+.
T Consensus 482 -L~P~~pt 488 (517)
T PRK10153 482 -LRPGENT 488 (517)
T ss_pred -cCCCCch
Confidence 7888775
No 164
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.1e-09 Score=95.95 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=93.3
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 420 (557)
-..|+.|++.|+|..|...|++++..-.... .-+.++..... ++ -..++.+++.++.++++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~-----k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--AL-----KLACHLNLAACYLKLKE 272 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HH-----HHHHhhHHHHHHHhhhh
Confidence 3478888888888888888888876532210 00001110000 00 12356677777777777
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 008705 421 PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA-AFYYK 499 (557)
Q Consensus 421 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~ 499 (557)
|.+|+..+.+++.++|++..+++..|.++.. +|+++.|+..|++++++.|.+-.+...+..+-.+..++.+. .+.|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~--~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLA--LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777 77777777777777777777777777777776666555444 56666
Q ss_pred HHHH
Q 008705 500 KDLE 503 (557)
Q Consensus 500 ~al~ 503 (557)
+++.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6665
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.9e-09 Score=95.68 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=88.8
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
.++.+++.++.++++|.+|+..+.+++.++|++..+++..|.++..+|+++.|+..|++++++.|.|..+...+..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HhcCcHHH-HHHHHHHHHhcCC
Q 008705 452 EQLHMLEE-AIKCYRRAANCND 472 (557)
Q Consensus 452 ~~~~~~~~-A~~~~~~al~~~p 472 (557)
...+.+ ..+.|.+++..-+
T Consensus 338 --~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 --IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred --HHHHHHHHHHHHHHHhhccc
Confidence 555544 4788888876543
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=5.7e-08 Score=92.80 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=134.3
Q ss_pred HHHhHHHHhcC---CchHHHHHHHHHH---hhCCCChHHHHHHHHHHHHh---------CChHHHHHHHHHHHhcCCCCH
Q 008705 375 TLMGHEYVEMK---NTPAAIDAYRRAV---DINPRDYRAWYGLGQAYEMM---------HMPLYALHYFRKSVFLQPNDS 439 (557)
Q Consensus 375 ~~l~~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~ 439 (557)
+..|...+..+ ..+.|+.+|.+++ .++|....++..++.++... ....+|....+++++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 55666555544 3567899999999 99999999999999998754 234578999999999999999
Q ss_pred HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 008705 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL 519 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 519 (557)
.++..+|.++.. .++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++ .+|....+-
T Consensus 339 ~a~~~~g~~~~~--~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-------LsP~~~~~~ 409 (458)
T PRK11906 339 KILAIMGLITGL--SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ-------LEPRRRKAV 409 (458)
T ss_pred HHHHHHHHHHHh--hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cCchhhHHH
Confidence 999999999998 99999999999999999999999999999999999999999999999999 678765544
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHHhcc
Q 008705 520 IFLATH-CRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 520 ~~la~~-~~~~g~~~~A~~~~~~al~~ 545 (557)
...-.+ ..-....+.|+..|-+-.+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 333222 33345678888888765543
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.8e-09 Score=80.86 Aligned_cols=80 Identities=29% Similarity=0.305 Sum_probs=44.0
Q ss_pred hCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705 418 MHMPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 495 (557)
+|+++.|+.+|+++++..|. +...++.+|.++.. .|++++|+.++++ ...+|.++...+.+|.++.++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~--~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ--QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH--TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH--CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35555566666666555553 23445555666665 6666666666655 4455555555555566666666666666
Q ss_pred HHHHH
Q 008705 496 FYYKK 500 (557)
Q Consensus 496 ~~~~~ 500 (557)
..|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55554
No 168
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.98 E-value=3.5e-07 Score=96.59 Aligned_cols=221 Identities=13% Similarity=0.072 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHH
Q 008705 251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF 330 (557)
Q Consensus 251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (557)
-.+..+-|++.+..+|++...|......+.+.++.+.|.+.+++++..-..+.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee------------------------- 1494 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE------------------------- 1494 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH-------------------------
Confidence 3445677888888999999999999999999999999999999999753221110
Q ss_pred hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH
Q 008705 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410 (557)
Q Consensus 331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 410 (557)
..-.+|..+-++...-|.-+.-.+.|++|.+... ...++..+..+|...+.+++|.++|+..++........|..
T Consensus 1495 ----EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~ 1569 (1710)
T KOG1070|consen 1495 ----EKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIM 1569 (1710)
T ss_pred ----HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHH
Confidence 0112333334444444555556666666665432 23456666667777777777777777777766666677777
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
+|..++.+++-+.|...+.+|++.-|. +.......+.+-++ .|+.+.+...|+-.+...|...+.|.-+...-.+.
T Consensus 1570 y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk--~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1570 YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK--YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh--cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHcc
Confidence 777777777777777777777776666 45566666666666 77777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHH
Q 008705 489 GRDEEAAFYYKKDLE 503 (557)
Q Consensus 489 g~~~~A~~~~~~al~ 503 (557)
|+.+.+...|++++.
T Consensus 1648 ~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1648 GDIKYVRDLFERVIE 1662 (1710)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777777766
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.98 E-value=1.2e-09 Score=81.88 Aligned_cols=81 Identities=27% Similarity=0.411 Sum_probs=46.3
Q ss_pred cCCchHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHH
Q 008705 384 MKNTPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 461 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~ 461 (557)
.|+++.|+..++++++..|. +...++.+|.+|+..|++++|+.++++ .+.+|.++.....+|.++.. +|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~--l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK--LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH--TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH--hCCHHHHH
Confidence 45566666666666666553 244455556666666666666666666 55555555555555666666 66666666
Q ss_pred HHHHHH
Q 008705 462 KCYRRA 467 (557)
Q Consensus 462 ~~~~~a 467 (557)
++|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 666543
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.96 E-value=2.3e-09 Score=75.88 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
++..|++++|+..|+++++.+|++..+|+.+|.++..+|++++|+.+|+++++.+|
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 33333333333333333333333333333333333333333333333333333333
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.94 E-value=6.7e-06 Score=75.91 Aligned_cols=296 Identities=15% Similarity=0.060 Sum_probs=218.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
++--...|.+....|+-..|.+.-.++-++-..+.+.+..+ .-+..-.-.|+++.|.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhl-----------------------LeAQaal~eG~~~~Ar 140 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHL-----------------------LEAQAALLEGDYEDAR 140 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHH-----------------------HHHHHHHhcCchHHHH
Confidence 33344567777788888888888888765544444444333 3477777889999999
Q ss_pred HHHHHHHhcCCCCHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh--
Q 008705 256 TKYEYLQGTFSFSNY-IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT-- 332 (557)
Q Consensus 256 ~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 332 (557)
+-|+.++. +|+.-. -+..+-.--...|+.+.|+.+-+.+-...|.-.-+....-......|+++.+..+.+.....
T Consensus 141 ~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 141 KKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 99998865 343211 12222223346799999999999999999988777777777777889999888887654332
Q ss_pred -CCCCh---hHHHHHHHHHh-hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705 333 -DKYRP---ESCCIIGNYYS-LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA 407 (557)
Q Consensus 333 -~~~~~---~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (557)
.+... .+-..-+.... ...+...|...-.+++++.|+...+-..-+..+++.|+..++-..++.+.+..| ++.
T Consensus 220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~- 297 (531)
T COG3898 220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPD- 297 (531)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChH-
Confidence 22211 11122222222 234688899999999999999999999999999999999999999999999988 444
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHH---HhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKS---VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 484 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a---~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 484 (557)
++.+|....--+.++.-++++ ..+.|++.+.....+..-.. .|++..|..--+.+....|.. .++..|+.+
T Consensus 298 ---ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld--a~e~~~ARa~Aeaa~r~~pre-s~~lLlAdI 371 (531)
T COG3898 298 ---IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD--AGEFSAARAKAEAAAREAPRE-SAYLLLADI 371 (531)
T ss_pred ---HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh--ccchHHHHHHHHHHhhhCchh-hHHHHHHHH
Confidence 445555555555666666655 45679999999999999999 999999999999999988874 466778888
Q ss_pred HHHc-CCHHHHHHHHHHHHH
Q 008705 485 HHAL-GRDEEAAFYYKKDLE 503 (557)
Q Consensus 485 ~~~~-g~~~~A~~~~~~al~ 503 (557)
-... |+-.++..++-++++
T Consensus 372 eeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 372 EEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HhhccCchHHHHHHHHHHhc
Confidence 7765 999999999999997
No 172
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.94 E-value=1.1e-09 Score=98.32 Aligned_cols=228 Identities=13% Similarity=0.018 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY 258 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 258 (557)
+-..|.-|+++|+|++||.||.+++..+|.|+-.+.. .|.+|++...+..|...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~N-------------------------RA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHIN-------------------------RALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhh-------------------------HHHHHHHHHHHHHHHHhH
Confidence 4567899999999999999999999999998865543 499999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705 259 EYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE 338 (557)
Q Consensus 259 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (557)
..++.++.....+|...+.+-..+|...+|.+.++.++++.|.+.+....++.+-.. .+.. +.. ...|....
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl----~E~~-I~~---KsT~G~~~ 226 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL----RERK-IAT---KSTPGFTP 226 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch----Hhhh-HHh---hcCCCCCc
Confidence 999999988889999999999999999999999999999999976655444443221 1110 111 11111001
Q ss_pred H---------HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705 339 S---------CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409 (557)
Q Consensus 339 ~---------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (557)
+ .-.-|..+...|.++.++.++-+-+..+..+...... +..+.+..+++.++....+++..+|.......
T Consensus 227 A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s 305 (536)
T KOG4648|consen 227 ARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTS 305 (536)
T ss_pred cccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccC
Confidence 1 1124677778888888888887766554444333333 56677778889999888888888887777777
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR 440 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 440 (557)
+.|.+-...|...++...++.++.+.|.+..
T Consensus 306 ~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 306 GPPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred CCchhHHHHhhhhhcCcchhheeeecccccc
Confidence 7777777778888888888888888776543
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.92 E-value=7.3e-07 Score=78.47 Aligned_cols=188 Identities=16% Similarity=0.126 Sum_probs=139.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
.-+..||..|....+.|++++|++.|+.+...+|..+-+-..+ +.++.++++.+++++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~----------------------l~l~yA~Yk~~~y~~ 89 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQ----------------------LDLAYAYYKNGEYDL 89 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHH----------------------HHHHHHHHhcccHHH
Confidence 3467899999999999999999999999999999877543332 456999999999999
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705 254 SLTKYEYLQGTFSFSN---YIQAQIAKAQYSL--------REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL 322 (557)
Q Consensus 254 A~~~~~~~l~~~p~~~---~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 322 (557)
|+...++.+..+|.++ .+++..|.+++.. .-..+|+..|+..+...|+..-+-+....+-.....
T Consensus 90 A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~---- 165 (254)
T COG4105 90 ALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA---- 165 (254)
T ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH----
Confidence 9999999999988754 5677888887643 235788899999999999875544443332221111
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 323 SYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
-..--..+|+.|.+.|.+..|+..++.+++..|+. .+++..+...|..+|-.++|...-. .+.
T Consensus 166 -------------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~ 231 (254)
T COG4105 166 -------------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLG 231 (254)
T ss_pred -------------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHH
Confidence 11223457888888888888888888888876554 3567777788888888887766543 444
Q ss_pred hC
Q 008705 400 IN 401 (557)
Q Consensus 400 ~~ 401 (557)
.+
T Consensus 232 ~N 233 (254)
T COG4105 232 AN 233 (254)
T ss_pred hc
Confidence 43
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.92 E-value=4.7e-09 Score=74.28 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=51.4
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
.+|..+...|++++|+..|+++++.+|+++.+|..+|.++.. .|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ--QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCCC
Confidence 567788888888888888888888888888888888888888 8888888888888888888764
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.88 E-value=7.2e-08 Score=88.19 Aligned_cols=102 Identities=17% Similarity=0.058 Sum_probs=61.7
Q ss_pred HHHHHHhHHH-HhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHH
Q 008705 372 SAWTLMGHEY-VEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIA 444 (557)
Q Consensus 372 ~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~ 444 (557)
..++..+..+ ...|++++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444443 34566666666666666666655 3566666666666666666666666666655543 455666
Q ss_pred HHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
+|.++.. .|++++|+..|+++++..|+..
T Consensus 223 lg~~~~~--~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQD--KGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHCcCCH
Confidence 6666666 6666666666666666666554
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.87 E-value=1.2e-07 Score=74.93 Aligned_cols=96 Identities=24% Similarity=0.210 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---hHHHHH
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAIALN 479 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 479 (557)
.+++.+|.++..+|+.++|+.+|++++...... ..++..+|..+.. +|++++|+..+++++...|+ +..+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~--LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN--LGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 355666666666666666666666666654333 3456666666666 66666666666666666565 455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 480 QLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.++.++...|++++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666655554
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.87 E-value=8.9e-08 Score=92.12 Aligned_cols=125 Identities=18% Similarity=0.303 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh
Q 008705 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK 350 (557)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 350 (557)
+.-.+..++...++++.|+..|+++.+.+|+ +...++.++...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-------------------------------------v~~~LA~v~l~~ 213 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPE-------------------------------------VAVLLARVYLLM 213 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCc-------------------------------------HHHHHHHHHHhc
Confidence 3344445555667788888888888776653 344577777777
Q ss_pred CchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHH
Q 008705 351 GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRK 430 (557)
Q Consensus 351 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 430 (557)
++..+|+..+.++++.+|.+...+...+..++..++++.|+...++++...|.+...|+.|+.+|..+|+++.|+..++.
T Consensus 214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888877765
Q ss_pred HH
Q 008705 431 SV 432 (557)
Q Consensus 431 a~ 432 (557)
+-
T Consensus 294 ~P 295 (395)
T PF09295_consen 294 CP 295 (395)
T ss_pred Cc
Confidence 43
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.87 E-value=8.7e-08 Score=87.68 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=94.3
Q ss_pred hhHHHHHHHHH-hhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHH
Q 008705 337 PESCCIIGNYY-SLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWY 409 (557)
Q Consensus 337 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 409 (557)
....+..|..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|++++...|++ +.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45666666665 56799999999999999999998 5799999999999999999999999999988875 78899
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW 442 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 442 (557)
.+|.++..+|++++|+..|+++++..|++..+-
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999986543
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.86 E-value=2.7e-05 Score=72.03 Aligned_cols=288 Identities=13% Similarity=0.016 Sum_probs=217.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSF--SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 319 (557)
|.+-...|+-..|.+.-.+.-++-.. .+-++..-++.-.-.|+++.|.+-|+.++..-....-.+..+..-....|..
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccH
Confidence 66666778888888888777643322 4556677788888999999999999988763322222233333333457899
Q ss_pred hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc---CcCCH---HH--HHHHhHHHHhcCCchHHH
Q 008705 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL---DKNYL---SA--WTLMGHEYVEMKNTPAAI 391 (557)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~---~~--~~~l~~~~~~~~~~~~A~ 391 (557)
+.+..+...+...-|.-+.++...-...+..|+++.|++..+..... .++-. .+ +...+.... .-+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHH
Confidence 99999999999999999999988888899999999999999876543 22211 11 222222222 34578899
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHH---HHH
Q 008705 392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR---RAA 468 (557)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~---~al 468 (557)
..-.+++++.|+...+-..-+..++..|+..++-.+++.+.+..|. |.+ +..|.....|+ .++.-++ +..
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCC--cHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999885 443 33444411444 4444444 445
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhcc
Q 008705 469 NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH-GRFEEAEVYCTRLLDY 545 (557)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 545 (557)
.+.|++.+.....+..-..-|++..|..--+.+.. ..| ...++..++.+.... |+-.++..++-++++-
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-------~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-------EAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-------hCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 67899999999999999999999999998888887 445 456788899998766 9999999999999985
No 180
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2.1e-06 Score=75.23 Aligned_cols=254 Identities=15% Similarity=0.085 Sum_probs=175.4
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHH
Q 008705 276 AKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEK 355 (557)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 355 (557)
.+-++..|+|..++..-.+.-... ...+....+...+...|.+.....-.... ....-.+...++.+...-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHH
Confidence 456777899998887766654433 34444455555666665554332221111 11122344456666666666555
Q ss_pred HHHHHHHHHhc-C-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 008705 356 SVVYFRRALKL-D-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVF 433 (557)
Q Consensus 356 A~~~~~~al~~-~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 433 (557)
-+.-..+-+.. . ..+......-|.+++..|++++|++..... .+.++...-.+++.++.+++-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55444443322 2 223344556678899999999999888763 3455666667888999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHhH--HhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcC
Q 008705 434 LQPNDSRLWIAMAQCYET--EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 511 (557)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (557)
++.+ ..+..+|..+.. .-.+++.+|.-+|+..-...|..+..+...+.++..+|++++|...++.++. .
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~-------k 236 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD-------K 236 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh-------c
Confidence 8654 334445544443 1145789999999999998888899999999999999999999999999999 7
Q ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHH-HHHhccCC
Q 008705 512 GPNMVEALIFLATHCRAHGRFEEAEVYC-TRLLDYTG 547 (557)
Q Consensus 512 ~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~~~ 547 (557)
++.+++.+.++..+-...|...++..-+ .+.....|
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 8999999999999999999887665544 44444443
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.84 E-value=9.7e-08 Score=91.88 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=100.6
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP 421 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 421 (557)
.+-.++...++++.|+..|++..+.+|+ +...++.++...++-.+|++.+.+++..+|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678888888888888877754 5667888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
+.|+...++++...|.+...|..|+.+|.. .|++++|+..+..+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~--~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQ--LGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHh--cCCHHHHHHHHhcC
Confidence 888888888888888888888888888888 88888888777654
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.82 E-value=2e-06 Score=71.04 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=132.5
Q ss_pred HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh-hCCCChHHHHHHHHHHHHhCChH
Q 008705 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD-INPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
+....+.=+.+....-..+.+...|.. .-.+.+|....+.|++.+|...|.+++. +...++..+.++++..+..+++.
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 333444456666666666666666663 4577899999999999999999999987 67788999999999999999999
Q ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 423 YALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (557)
.|...+++..+.+|. .+.....+|..+.. .|++.+|...|+.++...|. +.+....+..+.++|+..+|..-+..
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa--~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAA--QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHh--cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999999999998875 46778889999999 99999999999999998876 66777788999999999999888877
Q ss_pred HHHHHHh
Q 008705 501 DLERMEA 507 (557)
Q Consensus 501 al~~~~~ 507 (557)
..+.+.+
T Consensus 219 v~d~~~r 225 (251)
T COG4700 219 VVDTAKR 225 (251)
T ss_pred HHHHHHh
Confidence 7764433
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.82 E-value=1.1e-07 Score=75.09 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=60.8
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN---DSRLWIAMA 446 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~ 446 (557)
+++.+|.++-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45666666666666666666666666654333 445666666666777777777777666666666 555556666
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHh
Q 008705 447 QCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
.++.. .|+.++|+..+-.++.
T Consensus 83 l~L~~--~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYN--LGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHH--CCCHHHHHHHHHHHHH
Confidence 66666 6777777666665543
No 184
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.5e-05 Score=80.35 Aligned_cols=265 Identities=15% Similarity=0.099 Sum_probs=165.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHH
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLT 256 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~ 256 (557)
..+|.++.-+...++.+.|+++|+++-. |. -.+...+.++..+++
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~--ha---------------------------------fev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGV--HA---------------------------------FEVFRMLKEYPKQIE 903 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCC--hH---------------------------------HHHHHHHHhChHHHH
Confidence 4688888888999999999999998632 10 123333445566665
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCC
Q 008705 257 KYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYR 336 (557)
Q Consensus 257 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (557)
.|-+- ..++.+|..-|..+...|+.+.|+.+|..+-. +..+..+...+|+.+++..+++. ..+
T Consensus 904 ~Yv~~----~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~e-----sgd 966 (1416)
T KOG3617|consen 904 QYVRR----KRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEE-----SGD 966 (1416)
T ss_pred HHHHh----ccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHh-----ccc
Confidence 55443 23457788889999999999999999998754 33444556667888888777665 346
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcC------cCCHHHHHHHhHHHHhcC--CchHHHHHHHHHHhhCCCChHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLD------KNYLSAWTLMGHEYVEMK--NTPAAIDAYRRAVDINPRDYRAW 408 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~ 408 (557)
..+++.+|+.|...|++.+|+.+|.+|-... ..+. .--.+..+....+ +.-.|-.+|+.. +. ..
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nlal~s~~~d~v~aArYyEe~----g~---~~ 1038 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLALMSGGSDLVSAARYYEEL----GG---YA 1038 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHhhcCchhHHHHHHHHHHc----ch---hh
Confidence 6789999999999999999999998875431 1110 0011111111111 122222333221 00 00
Q ss_pred HHHHHHHHHhCChHHHHHHHHH----------HHhcCC-CCHHHHHHHHHHHhHHhcCcHHHHHHHHHH------HHhc-
Q 008705 409 YGLGQAYEMMHMPLYALHYFRK----------SVFLQP-NDSRLWIAMAQCYETEQLHMLEEAIKCYRR------AANC- 470 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~----------a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~------al~~- 470 (557)
..-..+|.+.|++.+|++.-=+ +-.++| .||..+..-+..+.. ..+|++|+.++-. |+.+
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~--~~qyekAV~lL~~ar~~~~AlqlC 1116 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN--NQQYEKAVNLLCLAREFSGALQLC 1116 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112334445555555443211 112333 457777777888888 8888888876543 3332
Q ss_pred ---------------CC------Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 471 ---------------ND------SE---AIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 471 ---------------~p------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.| +. ..++..+|.++.++|.|..|-+-|.++-.
T Consensus 1117 ~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1117 KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 11 11 34788999999999999999988887755
No 185
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.81 E-value=1.7e-05 Score=80.85 Aligned_cols=288 Identities=12% Similarity=0.030 Sum_probs=198.4
Q ss_pred HhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705 187 KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS 266 (557)
Q Consensus 187 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 266 (557)
...+++.+|.....+.++.+|+...+. ...|..+.++|+.++|..+++..-...+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~-------------------------vLkaLsl~r~gk~~ea~~~Le~~~~~~~ 74 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAK-------------------------VLKALSLFRLGKGDEALKLLEALYGLKG 74 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHH-------------------------HHHHHHHHHhcCchhHHHHHhhhccCCC
Confidence 467899999999999999999877554 3348899999999999988888877788
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHH
Q 008705 267 FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNY 346 (557)
Q Consensus 267 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 346 (557)
++...+-.+-.+|..++++++|..+|++++..+|. .+.+..+-..+...+.+.+....+-++.+..|.++-.+..+..+
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 88888889999999999999999999999999999 77788888888888888888888888888888887765554444
Q ss_pred Hhh-hCch---------HHHHHHHHHHHhcC-cCCH-HHHHHHhHHHHhcCCchHHHHHHHHHH-h-hCCCChHHHHHHH
Q 008705 347 YSL-KGQH---------EKSVVYFRRALKLD-KNYL-SAWTLMGHEYVEMKNTPAAIDAYRRAV-D-INPRDYRAWYGLG 412 (557)
Q Consensus 347 ~~~-~g~~---------~~A~~~~~~al~~~-p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al-~-~~p~~~~~~~~l~ 412 (557)
+.. .... .-|...+++.++.. +-.. .-....-.++..+|.+++|.+.+..-+ + ..+.+...-...+
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 432 2222 23556667776655 2221 123344466778899999999994433 3 3344444445566
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHhH----------HhcCcHHHHHHHHHHHHhcCCChHH-HHHH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA-MAQCYET----------EQLHMLEEAIKCYRRAANCNDSEAI-ALNQ 480 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~----------~~~~~~~~A~~~~~~al~~~p~~~~-~~~~ 480 (557)
..+...+++.+-.+...+++...+++...+.. .-.++.. .-.+..+.-++..++.+......|. +...
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le 313 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE 313 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH
Confidence 78888999999999999999999987222211 1111111 0023334444444444443222332 3333
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 008705 481 LAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~ 500 (557)
+-.-+...|+.+++...|-+
T Consensus 314 l~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 314 LDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred HHHHhcccCChHHHHHHHHH
Confidence 44444566888886655533
No 186
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.80 E-value=2.7e-06 Score=75.00 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705 268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY 347 (557)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 347 (557)
.+..++..|....+.|++++|+..|+.+....|.. |....+...++..+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s-------------------------------~~~~qa~l~l~yA~ 81 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS-------------------------------PYSEQAQLDLAYAY 81 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------------------------cccHHHHHHHHHHH
Confidence 44556666677777777777777777777666653 23455666677777
Q ss_pred hhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcC--------CchHHHHHHHHHHhhCCCChHH---------
Q 008705 348 SLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMK--------NTPAAIDAYRRAVDINPRDYRA--------- 407 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~--------- 407 (557)
++.++++.|+...++-+.+.|+++ .+++..|.+++..= -..+|+..|+..+...|++.-+
T Consensus 82 Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~ 161 (254)
T COG4105 82 YKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK 161 (254)
T ss_pred HhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 777777777777777777666554 33555555544321 1345666666677777765111
Q ss_pred --------HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705 408 --------WYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 408 --------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~ 463 (557)
-..+|..|.+.|.+..|+..++.+++..|+. .+++..+..+|.. +|-.++|.+.
T Consensus 162 ~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~--lgl~~~a~~~ 226 (254)
T COG4105 162 LNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA--LGLTDEAKKT 226 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH--hCChHHHHHH
Confidence 1234555555555555555555555554433 2344555555555 5555555444
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.78 E-value=3.6e-09 Score=95.13 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=97.0
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 420 (557)
-..|+-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|++.+.+..|...+..|+.++.....+|...|.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 421 PLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 421 ~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
..+|.+.++.++.+.|++.+..-.++
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 99999999999999999766443333
No 188
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.7e-07 Score=78.00 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=77.1
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRD-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
.-|.-++..|+|++|...|..|+.+.|.. ...+.+.|.+..+++.++.|+..+.++++++|.+..++...+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34566667777777777777777776654 2345667777777888888888888888888877777777788887
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 484 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 484 (557)
+ +..+++|+..|++.++.+|....+....+.+
T Consensus 180 k--~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 K--MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred h--hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7 7888888888888888877766555554444
No 189
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00023 Score=68.84 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=43.7
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHh
Q 008705 168 SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSL 219 (557)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 219 (557)
-.+.+|.|...|+.+-.-+-.+ .+++....|++.+...|..+.+|...+..
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~ 62 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIER 62 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 3456899999999998877666 99999999999999999999999877543
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.72 E-value=2.8e-06 Score=70.18 Aligned_cols=153 Identities=16% Similarity=0.192 Sum_probs=128.0
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVF-LQPNDSRLWIAMAQCYETEQLHMLEE 459 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~~~~~~ 459 (557)
....=+++....-..+.+...|. ..-.+.||.....+|++.+|...|++++. +...++.++..++...+. .+++..
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa--~~~~A~ 142 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA--IQEFAA 142 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh--hccHHH
Confidence 33444566666666777777774 34467899999999999999999999986 567889999999999999 999999
Q ss_pred HHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 008705 460 AIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV 537 (557)
Q Consensus 460 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 537 (557)
|...+++..+.+|. .+.....+|..+...|++.+|...|+.++. ..| .+.+....+..+.++|+.++|..
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-------~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-------YYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-------hCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 99999999998874 467888899999999999999999999998 344 57788889999999999888877
Q ss_pred HHHHHhc
Q 008705 538 YCTRLLD 544 (557)
Q Consensus 538 ~~~~al~ 544 (557)
-+..+.+
T Consensus 215 q~~~v~d 221 (251)
T COG4700 215 QYVAVVD 221 (251)
T ss_pred HHHHHHH
Confidence 6665543
No 191
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.72 E-value=3.4e-08 Score=72.82 Aligned_cols=74 Identities=34% Similarity=0.425 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
|+-..++.++|.+|..+|++++|+.+|+++++.....+...|..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44567899999999999999999999999999744443344566889999999999999999999999999876
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=4.3e-08 Score=70.07 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=19.7
Q ss_pred CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705 385 KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 385 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 437 (557)
|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 33333333333333333333333333333333333333333333333333333
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=6.8e-08 Score=69.04 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=61.1
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705 416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 484 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 484 (557)
...|++++|+..|++++..+|++..++..+|.++.. .|++++|...+++++..+|+++.++..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK--QGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH--TT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 568999999999999999999999999999999999 9999999999999999999998888777754
No 194
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=8.3e-06 Score=77.40 Aligned_cols=366 Identities=16% Similarity=0.114 Sum_probs=225.8
Q ss_pred chhHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHHHh--ccCCCCHHHHHHHHHhhhcHHHHhhcCC
Q 008705 155 NRELISLERELSTSWKNGTVDPFGLYLYGIV-LKDKGNENLARTVFVESV--NSYPWNWNAWSELKSLCTSIDILNSLNL 231 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~l~~~~~~~~~~~~l~~ 231 (557)
+.+++...+.+..+...+..+..+++..+.+ +++.|.... ...++... ..+-.. ..+....+..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~------------~~~~~~gld~ 96 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADA------------PGDVSSGLSL 96 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhcc------------ccchhcchhh
Confidence 4455555555655555666666666666655 444444332 22222211 111000 0111122233
Q ss_pred ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC----CHH-HHHHHHHHHHhcccHHHHHHHHH---HHHHh---CC
Q 008705 232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF----SNY-IQAQIAKAQYSLREFEQVEVIFE---ELLRN---DP 300 (557)
Q Consensus 232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~-~~~~la~~~~~~g~~~~A~~~~~---~~l~~---~p 300 (557)
.+..+.++..|.+++....+..|++........... ... +-+..-..+....+.++|+.++. +++.. .+
T Consensus 97 ~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~ 176 (696)
T KOG2471|consen 97 KQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL 176 (696)
T ss_pred hcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 344566777888888888888888877766543211 111 11222233444455566655443 22221 11
Q ss_pred --CCCCc-------------------------HHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCch
Q 008705 301 --YRVDD-------------------------MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH 353 (557)
Q Consensus 301 --~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 353 (557)
++... .......+........+..-.+.+..+..+.+.+....++.++..|++
T Consensus 177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~ 256 (696)
T KOG2471|consen 177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNH 256 (696)
T ss_pred cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcch
Confidence 11100 111122233344444455555666667778889999999999999999
Q ss_pred HHHHHHHHHHH-hcCcC------C--HHHHHHHhHHHHhcCCchHHHHHHHHHHhh---------CC---------CChH
Q 008705 354 EKSVVYFRRAL-KLDKN------Y--LSAWTLMGHEYVEMKNTPAAIDAYRRAVDI---------NP---------RDYR 406 (557)
Q Consensus 354 ~~A~~~~~~al-~~~p~------~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~ 406 (557)
.+|.+.+...- ...|. . -..|.++|.+++.+|.|..+..+|.+|++. .| +..+
T Consensus 257 ~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~e 336 (696)
T KOG2471|consen 257 PKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSME 336 (696)
T ss_pred HHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchh
Confidence 99998876531 12222 1 234789999999999999999999999961 11 2367
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc-----------------------C--------
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-----------------------H-------- 455 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-----------------------~-------- 455 (557)
+.|+.|..|...|++-.|.++|.++......+|+.|..++.|++.... |
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~ 416 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIE 416 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeec
Confidence 889999999999999999999999999999999999999999875100 0
Q ss_pred ----------------cHHHHHHHHHHHHhcC---------------------------------------------C-C
Q 008705 456 ----------------MLEEAIKCYRRAANCN---------------------------------------------D-S 473 (557)
Q Consensus 456 ----------------~~~~A~~~~~~al~~~---------------------------------------------p-~ 473 (557)
..+-|.-|++.++-+- | +
T Consensus 417 ~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~s 496 (696)
T KOG2471|consen 417 ENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQS 496 (696)
T ss_pred ccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCC
Confidence 0234566666665431 1 0
Q ss_pred h-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH-----HcCCHHHHHH
Q 008705 474 E-----------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR-----AHGRFEEAEV 537 (557)
Q Consensus 474 ~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~ 537 (557)
. ..++...+.+-..+|+.-.|+..-++.+. -|+...++..||-+|. -+.+..+|..
T Consensus 497 sp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq--------~~~lS~~~kfLGHiYAaEAL~lldr~seA~~ 568 (696)
T KOG2471|consen 497 SPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQ--------LADLSKIYKFLGHIYAAEALCLLDRPSEAGA 568 (696)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHh--------hhhhhhHHHHHHHHHHHHHHHHcCChhhhhh
Confidence 1 12456677788899999999999999887 4667777777776664 4566677766
Q ss_pred HHHH
Q 008705 538 YCTR 541 (557)
Q Consensus 538 ~~~~ 541 (557)
.+.-
T Consensus 569 HL~p 572 (696)
T KOG2471|consen 569 HLSP 572 (696)
T ss_pred ccCh
Confidence 5544
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.5e-07 Score=68.36 Aligned_cols=64 Identities=28% Similarity=0.373 Sum_probs=32.1
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
.+|...+++++|+.++++++.++|+++..|..+|.++.. .|++++|+..|+++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~--~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ--LGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH--hccHHHHHHHHHHHHHHCCCcHHHH
Confidence 344445555555555555555555555555555555555 5555555555555555555444433
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.66 E-value=1.6e-07 Score=68.19 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=41.6
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA 444 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 444 (557)
..+|...+++++|++++++++..+|+++..|..+|.++..+|++.+|+..|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666666666665554433
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.65 E-value=8.5e-07 Score=78.92 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCY 449 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~ 449 (557)
..+.-++..|+|..|...|..-++..|++ +.+++.||.+++.+|+++.|...|..+++..|++ |++++.+|.+.
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 33333444444555555555555444443 3444455555555555555555555554444333 34455555555
Q ss_pred hHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 450 ETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 450 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
.. +|+.++|...|+++++..|..+.
T Consensus 226 ~~--l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 226 GR--LGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HH--hcCHHHHHHHHHHHHHHCCCCHH
Confidence 55 55555555555555555554433
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.62 E-value=1.2e-06 Score=70.39 Aligned_cols=110 Identities=23% Similarity=0.176 Sum_probs=93.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
..+..+|..|...++.|+|.+|++.|+.+....|...-+-. ..+.++.+|+..+++++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~q----------------------AqL~l~yayy~~~~y~~ 65 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQ----------------------AQLDLAYAYYKQGDYEE 65 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHH----------------------HHHHHHHHHHHccCHHH
Confidence 45778999999999999999999999999999997653332 22456999999999999
Q ss_pred HHHHHHHHHhcCCCC---HHHHHHHHHHHHhccc---------------HHHHHHHHHHHHHhCCCCCCc
Q 008705 254 SLTKYEYLQGTFSFS---NYIQAQIAKAQYSLRE---------------FEQVEVIFEELLRNDPYRVDD 305 (557)
Q Consensus 254 A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~ 305 (557)
|+..+++.++++|.+ ..+++..|.+++.+.. ..+|...|+++++..|++.-+
T Consensus 66 A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 66 AIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999998876 4678999999998876 889999999999999986543
No 199
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1.3e-06 Score=73.00 Aligned_cols=114 Identities=24% Similarity=0.104 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 482 (557)
+..-|.-++..|+|++|..-|..|+.+.|..+ ..+.+.|.+..+ ++.++.|+....++++++|.+..++...|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK--l~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK--LRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH--hhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 34457888999999999999999999998764 367889999999 99999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705 483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530 (557)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 530 (557)
.+|.++.++++|+.-|++.++ .+|...++.-..+++--...
T Consensus 176 eayek~ek~eealeDyKki~E-------~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILE-------SDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHH-------hCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999 78887777777666544433
No 200
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.56 E-value=2.6e-06 Score=68.40 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705 268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY 347 (557)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 347 (557)
.+..++..|...+..|+|++|++.|+.+....|.. +....+...+|.+|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-------------------------------~ya~qAqL~l~yay 57 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-------------------------------EYAEQAQLDLAYAY 57 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-------------------------------cccHHHHHHHHHHH
Confidence 34455666666666666666666666666666642 23445555666666
Q ss_pred hhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCC
Q 008705 348 SLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKN 386 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~ 386 (557)
+..+++++|+..+++-++++|.++ .+++..|.+++....
T Consensus 58 y~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 58 YKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 666666666666666666666543 345555555555443
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.56 E-value=2e-06 Score=76.59 Aligned_cols=104 Identities=16% Similarity=0.093 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQL 481 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 481 (557)
.|..+.-++..|+|..|...|..-++..|++ +.+++.||.+++. +|++++|...|..+.+-.|+. |++++.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~--qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA--QGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh--cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 6788888899999999999999999999987 6799999999999 999999999999999987765 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520 (557)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (557)
|.+...+|+.++|...|+++++ ..|....+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k-------~YP~t~aA~~ 253 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK-------RYPGTDAAKL 253 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH-------HCCCCHHHHH
Confidence 9999999999999999999999 5677665544
No 202
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.53 E-value=0.0013 Score=64.94 Aligned_cols=367 Identities=11% Similarity=0.065 Sum_probs=227.7
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHH
Q 008705 159 ISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD 238 (557)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 238 (557)
..+...+..++...|..-..|-..|..-.+.|..+.++++|++++.--|.....|..+.....
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~----------------- 124 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLK----------------- 124 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----------------
Confidence 445555666777778888889999999999999999999999999999998888877744322
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH-HHHHHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM-YSNVLY 314 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~~~~~~ 314 (557)
-..|+.+.-...|+++...... +...|-..-..-..++++..-..+|+++++.--.....+.. +...+.
T Consensus 125 -------n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 125 -------NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLN 197 (577)
T ss_pred -------ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHh
Confidence 1223333333344444332221 11222222222344444555555555554432211111100 000000
Q ss_pred h-----ccchhHHHHH-----------------------HHHHHhhCCCChhHHHHHH-------HHHhhhCchHHHHHH
Q 008705 315 A-----KECFSALSYL-----------------------AHRVFMTDKYRPESCCIIG-------NYYSLKGQHEKSVVY 359 (557)
Q Consensus 315 ~-----~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~ 359 (557)
. ....+++..+ ...+....+.-.+....+. .++.........+..
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 0 0111111111 1111111111111111111 222233334444455
Q ss_pred HHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705 360 FRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431 (557)
Q Consensus 360 ~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 431 (557)
|+..++. ++.....|..........|+++...-.|++++--.......|...+.-....|+.+-|-..+..+
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~ 357 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA 357 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh
Confidence 5555432 22334567778888889999999999999999888888999999999999999999999999988
Q ss_pred HhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc
Q 008705 432 VFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 510 (557)
Q Consensus 432 ~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (557)
.++. |..+.+...-+.+-.. .|++..|...+++..+..|+...+-...+....+.|+.+.+.. +............
T Consensus 358 ~~i~~k~~~~i~L~~a~f~e~--~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~ 434 (577)
T KOG1258|consen 358 CKIHVKKTPIIHLLEARFEES--NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKE 434 (577)
T ss_pred hhhcCCCCcHHHHHHHHHHHh--hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccccc
Confidence 8875 6667777777777777 9999999999999998889988888888888888999988884 2233321111111
Q ss_pred CCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCchhh
Q 008705 511 EGPNMVEALIFLATHC-RAHGRFEEAEVYCTRLLDYTGPVSFT 552 (557)
Q Consensus 511 ~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~ 552 (557)
...-....+...++.. .-.++.+.|...+.+++++.|++...
T Consensus 435 ~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 435 NNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 2222344555555554 44688999999999999999887654
No 203
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.48 E-value=8.9e-06 Score=62.96 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=75.0
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHH
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS----RLWIAMAQCY 449 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~ 449 (557)
+-..|....+.|+.+.|++.|.+++.+.|..+.+|.+.++.+..+|+.++|+..+++++++..... .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 334566777788888888888888888888888888888888888888888888888887754432 3567778888
Q ss_pred hHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 450 ETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 450 ~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
.. .|+.+.|...|+.+-++...
T Consensus 126 Rl--~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RL--LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HH--hCchHHHHHhHHHHHHhCCH
Confidence 88 88888888888887776544
No 204
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.47 E-value=0.00021 Score=71.42 Aligned_cols=176 Identities=16% Similarity=0.124 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHH------HhcC----cCCH-HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRA------LKLD----KNYL-SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY 405 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~----p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (557)
.+.+-..|.+|.+..++++|+++|++. +++. |... ..--..|.-+...|+++.|+..|-.+-..
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~----- 735 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL----- 735 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-----
Confidence 345566788888888899999988753 3321 2111 11223466677788888888887655221
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
..-..+......+.+|+..+....... .-...|-.++.-|.. .|+|+-|.+.|.++- ........|
T Consensus 736 ---~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan--~~dfe~ae~lf~e~~--------~~~dai~my 801 (1636)
T KOG3616|consen 736 ---IKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYAN--KGDFEIAEELFTEAD--------LFKDAIDMY 801 (1636)
T ss_pred ---HHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhcc--chhHHHHHHHHHhcc--------hhHHHHHHH
Confidence 112233344566777777666543322 122345556677777 777877777776652 122233456
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539 (557)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 539 (557)
.+.|++++|.+.-+++.. .......|...+.-+.+.|+|.+|...|
T Consensus 802 ~k~~kw~da~kla~e~~~--------~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG--------PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hccccHHHHHHHHHHhcC--------chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 677777777666655543 2233445555566666666666665554
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.47 E-value=2.5e-06 Score=81.67 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=35.1
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH---HHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA---WYGLGQAYEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~ 434 (557)
+|+++.+|+++|..+...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555554432 555555555555555555555555544
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=1.8e-06 Score=82.56 Aligned_cols=70 Identities=20% Similarity=0.161 Sum_probs=66.5
Q ss_pred hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL---WIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
.+|+++.+|+++|.+|..+|++++|+..|+++++++|++..+ |+++|.+|.. +|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~--LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY--REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999854 9999999999 999999999999999973
No 207
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.1e-05 Score=71.22 Aligned_cols=161 Identities=16% Similarity=-0.003 Sum_probs=118.7
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHhHHh
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL-QPND---SRLWIAMAQCYETEQ 453 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~---~~~~~~l~~~~~~~~ 453 (557)
+.+....|+..+|-..+.+.++-.|.+.-++..--.+++.+|+...-...+++.+-. +|+- ..+.-.++.++..
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-- 187 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-- 187 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH--
Confidence 445556788888888888888888888888877777888888888888888888766 5444 4455567777778
Q ss_pred cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHH
Q 008705 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFE 533 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 533 (557)
.|-|++|.+.-++++++++.+..+...++.++...|++.++.+.+.+.-..... ..---..-|...|.++...+.++
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---SWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---hhHHHhhhhHHHHHhhhcccchh
Confidence 888888888888888888888888888888888888888888887765441110 00011233555777888888888
Q ss_pred HHHHHHHHHh
Q 008705 534 EAEVYCTRLL 543 (557)
Q Consensus 534 ~A~~~~~~al 543 (557)
.|.+.|.+-+
T Consensus 265 ~aleIyD~ei 274 (491)
T KOG2610|consen 265 KALEIYDREI 274 (491)
T ss_pred HHHHHHHHHH
Confidence 8888886543
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=9.9e-05 Score=64.74 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=108.1
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC------CCChHHHHHH
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN------PRDYRAWYGL 411 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l 411 (557)
+.+.+..++.-.|+|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|+++-+.+ .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34456667777788888888888888777 5566677778888888888888888887554322 1234456677
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH---HHHHHHHHHH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLH 485 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 485 (557)
+.+|...+++.+|...|.+++..+|.++.+.++.+.|+.. .|+..+|++.++.++...|... .+.+++..+|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 7788888888888888888888888888888888888888 8999999999998888888642 2444444443
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.43 E-value=6.8e-06 Score=63.58 Aligned_cols=93 Identities=20% Similarity=0.123 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh----HHHHHHHHHH
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE----AIALNQLAKL 484 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~ 484 (557)
-.-|.+....|+.+.|++.|.+++.+.|..+.+|++.+..+.. .|+.++|+..+++++++.... ..++...|.+
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL--q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL--QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH--cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666666 666666666666666654322 2255566666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 008705 485 HHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~ 503 (557)
|..+|+.+.|..-|+.+.+
T Consensus 125 yRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHhCchHHHHHhHHHHHH
Confidence 6666666666666666665
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00034 Score=61.49 Aligned_cols=145 Identities=18% Similarity=0.162 Sum_probs=123.0
Q ss_pred chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHH
Q 008705 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRK 430 (557)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 430 (557)
..+..+..+++-+ ..+.+.+..++.-.|.|.-.+..+.+.++.+ |.++.....||.+-.+.|+.+.|..+|++
T Consensus 164 ~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 164 AEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred chhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3355666666544 3466778889999999999999999999988 66788889999999999999999999996
Q ss_pred HHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 431 SVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 431 a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
.-+.. .....+..+.+.++.- .+++.+|...|.+++..+|.++.+.++.|.|+.-.|+..+|++.++.++.+
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg--~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLG--QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheec--ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 54332 2234566778888888 999999999999999999999999999999999999999999999999983
No 211
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.40 E-value=2.7e-06 Score=70.47 Aligned_cols=88 Identities=26% Similarity=0.312 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC----------chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC--
Q 008705 353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN----------TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM-- 420 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-- 420 (557)
|+.|.+.++.....+|.+.+.++.-|..+.++.+ +++|+.-|++|+.++|+...+++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5677777777778888888888887777766533 4567777777777888888888888877765542
Q ss_pred ---------hHHHHHHHHHHHhcCCCCHH
Q 008705 421 ---------PLYALHYFRKSVFLQPNDSR 440 (557)
Q Consensus 421 ---------~~~A~~~~~~a~~~~p~~~~ 440 (557)
|++|..+|+++...+|++..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 34455555555555555443
No 212
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.39 E-value=3.6e-06 Score=69.78 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC-
Q 008705 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----------MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH- 455 (557)
Q Consensus 387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~- 455 (557)
++.|.+.++.....+|.+.+.+++.|.++..+. .+++|+.-|++++.++|+..+++..+|.+|.. .+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts--~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS--LAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HHh
Confidence 678999999999999999999999998887653 45678888999999999999999999999976 43
Q ss_pred ----------cHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008705 456 ----------MLEEAIKCYRRAANCNDSEAIALNQLAK 483 (557)
Q Consensus 456 ----------~~~~A~~~~~~al~~~p~~~~~~~~la~ 483 (557)
.|++|..+|++|...+|++......|..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4788999999999999998765554443
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.38 E-value=0.0024 Score=60.69 Aligned_cols=422 Identities=11% Similarity=0.080 Sum_probs=256.0
Q ss_pred ccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHH
Q 008705 85 EDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERE 164 (557)
Q Consensus 85 ~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (557)
+.|..-...|.|-.-|-.++.+++-.+++++..++-|.+-+....|+.|+... +++...+.-
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~------------------~df~svE~l 98 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR------------------KDFRSVESL 98 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh------------------hhHHHHHHH
Confidence 45667788899999999999999999999999999998888888899886322 112222222
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcC---------ChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhH
Q 008705 165 LSTSWKNGTVDPFGLYLYGIVLKDKG---------NENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHW 235 (557)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g---------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~ 235 (557)
+.+-++. ..+..+|.++-..-.+.+ ..-+|.+.--..+-.+|.....|.+.+........+..
T Consensus 99 f~rCL~k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k------- 170 (660)
T COG5107 99 FGRCLKK-SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK------- 170 (660)
T ss_pred HHHHHhh-hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-------
Confidence 2221111 222333333332222222 12233333333344678887788777655443222111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHH-HHH---------HHHHHHH----hcccHHHHHHHHHHHHHh---
Q 008705 236 MKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNY-IQA---------QIAKAQY----SLREFEQVEVIFEELLRN--- 298 (557)
Q Consensus 236 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~---------~la~~~~----~~g~~~~A~~~~~~~l~~--- 298 (557)
..++.+.+.-...|.+++..--.+.+ .|. ..+.+-- ..--|-.|...++++..+
T Consensus 171 ---------wEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 171 ---------WEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRG 241 (660)
T ss_pred ---------HHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhcc
Confidence 12344455555666666553222211 110 1111111 111244555555555443
Q ss_pred ----CCCCCCc---------HHHHHHHHHhcc---------chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHH
Q 008705 299 ----DPYRVDD---------MDMYSNVLYAKE---------CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKS 356 (557)
Q Consensus 299 ----~p~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 356 (557)
+|-+... -..+-.+-+.+. ..+......++++..-+..+++|+....+....++-++|
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 1111100 011112222221 123455566778888899999999999999999999999
Q ss_pred HHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh------------------CCCC------------hH
Q 008705 357 VVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI------------------NPRD------------YR 406 (557)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~p~~------------~~ 406 (557)
+...++++...|. ....++..|-..++.++-..+|+++.+. +|.. .-
T Consensus 322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~ 398 (660)
T COG5107 322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTF 398 (660)
T ss_pred HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhh
Confidence 9999988776665 5556666666666655555556555431 1100 12
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
+|..+-..-.+..-.+.|...|-++-+..-....++..-|.+ +.. .|++.-|-..|+-.+...|+++......-..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~--~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA--TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh--cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 233333333444556778888888766542333333333322 233 79999999999999999999988888888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
...++-..|...|++++.++.. .....+|-.+......-|+...+...=++...+-|+.+.
T Consensus 477 i~inde~naraLFetsv~r~~~-----~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 477 IRINDEENARALFETSVERLEK-----TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHH-----hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 8999999999999999986543 244667888888888899999998888888888777644
No 214
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.3e-05 Score=66.43 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=83.6
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR------LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIA 477 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 477 (557)
..+.+|. ..++++|+.++++++++..+-.+ .+..+|.+|.. .+.++++|+.+|+++-+....+ ...
T Consensus 79 eA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs-dl~d~ekaI~~YE~Aae~yk~ees~ssANKC 156 (288)
T KOG1586|consen 79 EAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES-DLQDFEKAIAHYEQAAEYYKGEESVSSANKC 156 (288)
T ss_pred HHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh-hHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 3334443 33666677777666666543322 34467777765 1477888888888876653322 225
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
+...|..-...++|.+|+..|++....--...-..-..-..++.-|.|++-..+.-.+...+++-.+++|.-
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 666677777788888888888887762110000011122344556777777788888888888888877653
No 215
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.38 E-value=0.0026 Score=63.95 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHH-HHHHHHHHHHHhhhHHHH
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMK-DYFLASAYQELRMHKESL 255 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~-~~~la~~~~~~~~~~~A~ 255 (557)
.++-.-|.++.+..++++|+++|++--. ..--..|++ +.+|..... .---|.-+...|+++.|+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgda-----f~kaielar----------fafp~evv~lee~wg~hl~~~~q~daai 726 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDA-----FGKAIELAR----------FAFPEEVVKLEEAWGDHLEQIGQLDAAI 726 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccH-----HHHHHHHHH----------hhCcHHHhhHHHHHhHHHHHHHhHHHHH
Confidence 4455556667777777777777765311 000111211 112211111 011255666777777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCC
Q 008705 256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKY 335 (557)
Q Consensus 256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (557)
..|-.+-. ......+.....+|.+|+.+++.+..... ....+-..+..+...++++.+..++..+
T Consensus 727 nhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~------ 791 (1636)
T KOG3616|consen 727 NHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEA------ 791 (1636)
T ss_pred HHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhc------
Confidence 77665521 12222334455667777766665544322 1222334445555556666655554431
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-HHHHHHhHHHHhc-------------CCchHHHHHHHHH----
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-SAWTLMGHEYVEM-------------KNTPAAIDAYRRA---- 397 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~-------------~~~~~A~~~~~~a---- 397 (557)
.........|-+.|+|+.|.+.-.+.. .|... ..|...+.-+-+. |.++.|+..|.+.
T Consensus 792 --~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~d 867 (1636)
T KOG3616|consen 792 --DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDD 867 (1636)
T ss_pred --chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcch
Confidence 112223344555666666655554442 22221 2233333333333 3344444444432
Q ss_pred --Hh----hCCCC-hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705 398 --VD----INPRD-YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470 (557)
Q Consensus 398 --l~----~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~ 470 (557)
+. ..|+. ......+|.-+...|+...|...|-++-. |..-...|.. .+.+++|-+.-+. .
T Consensus 868 dmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~--s~lw~dayriakt---e 934 (1636)
T KOG3616|consen 868 DMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKA--SELWEDAYRIAKT---E 934 (1636)
T ss_pred HHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhh--hhhHHHHHHHHhc---c
Confidence 11 11221 34566677777778888888777766532 1122223333 4444444332211 1
Q ss_pred CCChHH--HHHH---------HHHHHHHcCCHHHHHHH------HHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHH
Q 008705 471 NDSEAI--ALNQ---------LAKLHHALGRDEEAAFY------YKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFE 533 (557)
Q Consensus 471 ~p~~~~--~~~~---------la~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 533 (557)
...+.. +.+. ...++-+.|-.+.|+.. |+-+.+.. . .......+.++..++..+...|+++
T Consensus 935 gg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdla-r-i~~k~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 935 GGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLA-R-IAAKDKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred ccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHH-H-HhhhccCccchhHHhhhhhhccchh
Confidence 111110 0000 11223333433333332 11111100 0 0012345678889999999999999
Q ss_pred HHHHHHHHHhccC
Q 008705 534 EAEVYCTRLLDYT 546 (557)
Q Consensus 534 ~A~~~~~~al~~~ 546 (557)
+|-+.|-.+++++
T Consensus 1013 daskhyveaikln 1025 (1636)
T KOG3616|consen 1013 DASKHYVEAIKLN 1025 (1636)
T ss_pred hhhHhhHHHhhcc
Confidence 9999999999886
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.35 E-value=8.7e-07 Score=65.23 Aligned_cols=64 Identities=33% Similarity=0.476 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS---EAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
..++..+|.+|.. .|++++|+.+|++++.+ .+. ...++.++|.++..+|++++|+.+++++++.
T Consensus 5 a~~~~~la~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRE--LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777 77777777777777654 112 2446777777777777777777777777763
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.35 E-value=0.00043 Score=69.74 Aligned_cols=161 Identities=19% Similarity=0.057 Sum_probs=116.1
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCC-hHH-----HHHHHHH-HH----HhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRD-YRA-----WYGLGQA-YE----MMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~-----~~~l~~~-~~----~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
-.+.--.|+-+.+++.+.++.+...-. +-+ ++..+.. +. .....+.|...+....+..|+..-..+..|
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 334445688888888888887622111 111 1111111 11 244567889999999999999988889999
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH
Q 008705 447 QCYETEQLHMLEEAIKCYRRAANCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 522 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 522 (557)
.++.. .|+.++|++.|++++.....- ...++.+|+++..+++|++|..+|.+..+. ..-...-..+..
T Consensus 275 R~~~~--~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 275 RLERL--KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKWSKAFYAYLA 346 (468)
T ss_pred HHHHH--hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------cccHHHHHHHHH
Confidence 99999 999999999999887543322 337888999999999999999999998872 334455566677
Q ss_pred HHHHHHcCCH-------HHHHHHHHHHhccC
Q 008705 523 ATHCRAHGRF-------EEAEVYCTRLLDYT 546 (557)
Q Consensus 523 a~~~~~~g~~-------~~A~~~~~~al~~~ 546 (557)
|-|+...|+. ++|.++|.++-.+.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 8889999988 88888888876553
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.34 E-value=0.0031 Score=60.13 Aligned_cols=408 Identities=12% Similarity=0.086 Sum_probs=205.2
Q ss_pred HHHhhhhhhHHHHHHHHhhhcCC---chhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCC
Q 008705 97 AKSYFDCREYRRAAHVLRDQTGR---RSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGT 173 (557)
Q Consensus 97 a~~~~~~~~y~~A~~~l~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 173 (557)
|-++-++|++.+|..+|.++-+. .+..+.- -.+.| +.-.+ -...+++.....+..+.+..|
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lke--Evl~g---rilnA-----------ffl~nld~Me~~l~~l~~~~~ 76 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKE--EVLGG---RILNA-----------FFLNNLDLMEKQLMELRQQFG 76 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH--HHHhh---HHHHH-----------HHHhhHHHHHHHHHHHHHhcC
Confidence 77888999999999999987542 2221110 00111 11111 122344555555666666778
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
..++...-.|...++.|.+.+|++.+..-...-......|.... .. ..-+++......++++...|++.+
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----i~-----~l~~df~l~~i~a~sLIe~g~f~E 146 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----IQ-----QLFSDFFLDEIEAHSLIETGRFSE 146 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----HH-----HHhhHHHHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999988766554333333333220 00 011233344457999999999999
Q ss_pred HHHHHHHHHhc-CC----CCHHHH----HHHHHHHHhc----c-------cHHHHHHHHHHHHHhCC--CC--CCc---H
Q 008705 254 SLTKYEYLQGT-FS----FSNYIQ----AQIAKAQYSL----R-------EFEQVEVIFEELLRNDP--YR--VDD---M 306 (557)
Q Consensus 254 A~~~~~~~l~~-~p----~~~~~~----~~la~~~~~~----g-------~~~~A~~~~~~~l~~~p--~~--~~~---~ 306 (557)
+..++++.+.. .| -+.+.+ ..+|+.|+-. . -|+.+.-+.+++-..+. .. ... .
T Consensus 147 gR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~ 226 (549)
T PF07079_consen 147 GRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELF 226 (549)
T ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHH
Confidence 99999998763 33 233333 2445544321 1 13333333333322221 00 000 0
Q ss_pred HHHHHHHH---------------------h---------------ccchhHHHHHHHHHHhhC--CCChhHHHHHHH---
Q 008705 307 DMYSNVLY---------------------A---------------KECFSALSYLAHRVFMTD--KYRPESCCIIGN--- 345 (557)
Q Consensus 307 ~~~~~~~~---------------------~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~--- 345 (557)
..+...++ . ..+.+++..+++.+.... +-..+.-...|.
T Consensus 227 s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 227 STIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 00000000 0 011122222222211110 000000111111
Q ss_pred HHhhhCchHHHHHHHHHHHhcCcCCHHHHHH------HhHHHH-hcC---CchHHHHHHHHHHhhCCCC---hHHHHHHH
Q 008705 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTL------MGHEYV-EMK---NTPAAIDAYRRAVDINPRD---YRAWYGLG 412 (557)
Q Consensus 346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------l~~~~~-~~~---~~~~A~~~~~~al~~~p~~---~~~~~~l~ 412 (557)
...+.++..+|..++.-...++|+.....-. +-.+.. ... +...=+..++.+-..+-+. ...+..-|
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 1223455555555555555555554311110 001111 000 0111112222222222211 12223344
Q ss_pred HHHHHhCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHH--HHHHHHh---------cCC---ChHHH
Q 008705 413 QAYEMMHM-PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK--CYRRAAN---------CND---SEAIA 477 (557)
Q Consensus 413 ~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~--~~~~al~---------~~p---~~~~~ 477 (557)
.-+...|. -++|+..++.+++..|.|..+-+..-... ...|.+|+. .+-+.+. +.| .+.+.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv----Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV----KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 55556666 78889999998888888765433222111 122333321 1112211 122 23344
Q ss_pred HHHHH--HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 478 LNQLA--KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 478 ~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
-+.|+ ..++..|++.++.-+-.=..+ ..| .+.++..+|.+.....+|++|..++...
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~-------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTK-------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH-------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44444 446788999999877666666 677 8999999999999999999999998764
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.0002 Score=65.11 Aligned_cols=160 Identities=9% Similarity=-0.035 Sum_probs=113.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCCCcHHHHHHHHHhccchh
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN-DPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
+.+....|++.+|-...+++++.+|.+.-++..--.+++..|+.+.-...+++++-. +|+-+
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp----------------- 172 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP----------------- 172 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-----------------
Confidence 556677888888888999999999988888877778888889988888888888765 44321
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705 321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI 400 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 400 (557)
-...+.-.++..+...|-+++|.+.-+++++++|.+..+....++++...|++.++.++..+.-..
T Consensus 173 --------------~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 173 --------------CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred --------------HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 112223345556667788888888888888888888878788888888888888887776654332
Q ss_pred CCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 401 NPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 401 ~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
-... ..-|..-+..+..-+.++.|+..|.+-+
T Consensus 239 Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 239 WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 2111 1123345666677778888888887644
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=6.2e-05 Score=65.27 Aligned_cols=197 Identities=14% Similarity=0.065 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhC-----CCCh
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-----PRDY 405 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 405 (557)
...+..-+..|...+++++|..++.++.+-..++. .++-..+.+..++..+.++..+|+++..+. |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 44556666777777777877777777775433332 223445556666677777777777776542 2222
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC----CChH
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCN----DSEA 475 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~ 475 (557)
..-...+--.....++++|+.+|++++.+-..+. +.+...+.++.+ ..++++|-..+.+-.... ....
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr--l~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR--LEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh--hHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 2222233333445566667777776666543331 233445556666 666666666665543321 1111
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 476 I--ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539 (557)
Q Consensus 476 ~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 539 (557)
. .+.....+|.-..+|..|..+++..-+. .....+++..+..+|-..|- .|+.+++...+
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi---p~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQI---PAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcC---ccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 1 2333333344444666666666665541 11123445555555544433 45555554443
No 221
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00019 Score=62.33 Aligned_cols=199 Identities=15% Similarity=0.115 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh
Q 008705 270 YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL 349 (557)
Q Consensus 270 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 349 (557)
..+...+.++...++|++|...+.++.+-..++...++. +..+-..+.....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA----------------------------AKayEqaamLake 83 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA----------------------------AKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH----------------------------HHHHHHHHHHHHH
Confidence 344555677777788888888888887655443322211 1112223333334
Q ss_pred hCchHHHHHHHHHHHhcC-----cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHh
Q 008705 350 KGQHEKSVVYFRRALKLD-----KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMM 418 (557)
Q Consensus 350 ~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~ 418 (557)
...+.++..+|+++..+. |+....-...+--..+..++++|+.+|++++.+-..+ .+.+...+.++.+.
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 455555555555555442 2222222333334457778999999999988764433 44556678889999
Q ss_pred CChHHHHHHHHHHHhc------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHc
Q 008705 419 HMPLYALHYFRKSVFL------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 419 ~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~ 488 (557)
.++.+|-..+.+-... .++....+.....++.. ..+|..|.++++...++ .|.+..++.+|-..| ..
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~--~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY--AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh--HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 9999988888765432 23334455666666666 78999999999997776 345566777766655 45
Q ss_pred CCHHHHHHHHH
Q 008705 489 GRDEEAAFYYK 499 (557)
Q Consensus 489 g~~~~A~~~~~ 499 (557)
|+.++....+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 67777665543
No 222
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.28 E-value=7.1e-05 Score=72.81 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=97.5
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHH
Q 008705 161 LERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240 (557)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 240 (557)
+..-+....+..+.+...+..-+..+...|+..+|..++..++...|....-... .-
T Consensus 198 ~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~l-----------------------LS 254 (886)
T KOG4507|consen 198 IGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIAL-----------------------LS 254 (886)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchh-----------------------hh
Confidence 3334444555677777777777777788999999999999999988765432221 24
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN 311 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (557)
+|.++.+.|...+|--++..++.-.|....-++.++.++.+.|++......|..+.+.+|..........+
T Consensus 255 laTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~ 325 (886)
T KOG4507|consen 255 LATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKH 325 (886)
T ss_pred HHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHH
Confidence 58889999999988888888887766666668889999999999999999999999988877665544433
No 223
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00044 Score=59.71 Aligned_cols=159 Identities=15% Similarity=0.154 Sum_probs=113.8
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcC----c-C-CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHH
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLD----K-N-YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWY 409 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~----p-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 409 (557)
.-|+.|....++..|-..|.++-+.. . . ....+...+.+| +..++++|+.++++++++..+- ...+.
T Consensus 39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~ 117 (288)
T KOG1586|consen 39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI 117 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence 36677777777777777777765542 1 1 233455555555 4459999999999999987654 33456
Q ss_pred HHHHHHHHh-CChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH-------
Q 008705 410 GLGQAYEMM-HMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA------- 475 (557)
Q Consensus 410 ~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------- 475 (557)
.+|.+|..- .++++|+.+|+++-+....+ ..++...+..-.. .++|.+|+..|+++....-+++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~--leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ--LEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 789998776 89999999999998765432 2355566666666 9999999999999877654443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
..++.-|.|+.-..+.-.+...+++..+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2456677788887888888888887777
No 224
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.26 E-value=0.0063 Score=60.40 Aligned_cols=311 Identities=13% Similarity=0.116 Sum_probs=217.7
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHH
Q 008705 193 NLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQ 272 (557)
Q Consensus 193 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 272 (557)
+.+...|...+...|.....|... |..-.+.|..+.++++|++.+.-.|.+...|
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kf-------------------------A~~E~klg~~~~s~~Vfergv~aip~SvdlW 116 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKF-------------------------ADYEYKLGNAENSVKVFERGVQAIPLSVDLW 116 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHH-------------------------HHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 667778888899999999888777 8888899999999999999999999998888
Q ss_pred HHHHH-HHHhcccHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705 273 AQIAK-AQYSLREFEQVEVIFEELLRNDPYR---VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS 348 (557)
Q Consensus 273 ~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 348 (557)
...-. +--..|+.+.-...|+++......+ ...|+.+......++.......++.+.+......-..++..=.-+.
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH
Confidence 65543 3445688888888999998865543 3456667777777778888888887777655433322222111111
Q ss_pred hh------CchHHHHHHHHHHHh-----------------------cCcCCHHHHHHHh-------HHHHhcCCchHHHH
Q 008705 349 LK------GQHEKSVVYFRRALK-----------------------LDKNYLSAWTLMG-------HEYVEMKNTPAAID 392 (557)
Q Consensus 349 ~~------g~~~~A~~~~~~al~-----------------------~~p~~~~~~~~l~-------~~~~~~~~~~~A~~ 392 (557)
.. -..++++..-..... ..+.....-..+. .++.......+.+-
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 11 111222111111110 0011111111111 12222223334444
Q ss_pred HHHHHHhh-----CC---CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHH
Q 008705 393 AYRRAVDI-----NP---RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY 464 (557)
Q Consensus 393 ~~~~al~~-----~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~ 464 (557)
.++..+.. .| .....|......-...|+++...-.|++++--.......|...+..... .|+.+-|...+
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~--~~~~~~~~~~~ 354 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES--SGDVSLANNVL 354 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH--cCchhHHHHHH
Confidence 44444431 22 2355677777778889999999999999998888889999999999999 99999999988
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 008705 465 RRAANC-NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV 537 (557)
Q Consensus 465 ~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 537 (557)
.++.++ .|..+.+...-+..-...|++..|...++++.+ ..|+...+-...+.+..+.|+.+.+..
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~-------e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIES-------EYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHh-------hCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 888876 466678888888888999999999999999998 449999998999999999999999983
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.26 E-value=8.3e-05 Score=71.52 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-CCChHHHHHHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-NDSEAIALNQL 481 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l 481 (557)
..+...+|.+..++|+.++|++.++..++..|. +-.+..++..++.. .+.|.++...+.+--++ -|+...+.+.-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe--lq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE--LQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh--cCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 344577999999999999999999999988775 35588899999999 99999999999886443 35666666665
Q ss_pred HHHHHH-cCC---------------HHHHHHHHHHHHH
Q 008705 482 AKLHHA-LGR---------------DEEAAFYYKKDLE 503 (557)
Q Consensus 482 a~~~~~-~g~---------------~~~A~~~~~~al~ 503 (557)
|.+-.+ .++ -..|.+.+.+|++
T Consensus 337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve 374 (539)
T PF04184_consen 337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE 374 (539)
T ss_pred HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH
Confidence 554433 122 1346677888887
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=5.1e-05 Score=71.03 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=109.5
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE-MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
+|+.+.+...+.+..+.|...|.+|.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777888888889999999999987666678888888888666 5666669999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
.|+.+.|..+|++++..-|... .+|......-.. .|+.+...++.+++.+..|.+..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~--~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK--YGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999998876654 578888888888 89999999999998888776443
No 227
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.1e-05 Score=69.59 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=87.8
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP 421 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 421 (557)
.-|+.++....|..|+.+|.+++.++|..+..|.+.+.++++.++++.+....++++++.|+....++.+|........+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 35777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 008705 422 LYALHYFRKSVFL 434 (557)
Q Consensus 422 ~~A~~~~~~a~~~ 434 (557)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999665
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.20 E-value=0.00021 Score=68.82 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=90.6
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQC 448 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 448 (557)
.+...+|.+..+.|+.++|++.++..++.+|. +..+..+|..++..++.+.++...+.+.-++. |.++...+.-+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 44567899999999999999999999988775 46688999999999999999999998865442 5555544444433
Q ss_pred HhHH-----------hcCc---HHHHHHHHHHHHhcCCChHHHHHHHHH------HHHHcCCHHHHHHHHHHHHH
Q 008705 449 YETE-----------QLHM---LEEAIKCYRRAANCNDSEAIALNQLAK------LHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 449 ~~~~-----------~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~------~~~~~g~~~~A~~~~~~al~ 503 (557)
-.+. +.|- -..|++.+.+|++.+|..+..+..+-. -..+.|+ .||+.|---.+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~ 413 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQ 413 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHH
Confidence 3220 0121 234778999999999988775544322 1334454 666666555554
No 229
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0082 Score=57.75 Aligned_cols=413 Identities=12% Similarity=0.048 Sum_probs=222.7
Q ss_pred hhHHHHHHHhhhhh--hHHHHHHHHhhhcCCchhh-HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705 91 SDFYLLAKSYFDCR--EYRRAAHVLRDQTGRRSVF-LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST 167 (557)
Q Consensus 91 ~~~~~la~~~~~~~--~y~~A~~~l~~~~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 167 (557)
....-+|..+-..| +...|++.++......+.+ ....+..-.|. .. + ...++++.+...|++
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~------lL-~--------~yT~N~elAksHLek 72 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGA------LL-L--------RYTKNVELAKSHLEK 72 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHH------HH-H--------HHhccHHHHHHHHHH
Confidence 45566788888888 8999999999876644333 22222222221 00 0 011122222233322
Q ss_pred hh---cCCCC----ChhHHHHHHHHHHhcC-ChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHH
Q 008705 168 SW---KNGTV----DPFGLYLYGIVLKDKG-NENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDY 239 (557)
Q Consensus 168 ~~---~~~~~----~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~ 239 (557)
.. +.-|. .-.+.-+++.++.+.. .+..|...++++++....++ .|..- ..+
T Consensus 73 A~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p-~wsck--------------------llf 131 (629)
T KOG2300|consen 73 AWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP-YWSCK--------------------LLF 131 (629)
T ss_pred HHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc-hhhHH--------------------HHH
Confidence 11 11121 2345667888888777 89999999999999776655 33321 123
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhc-CCCC-H--HHHHH--HHHHHHhc---ccHHHHHHHHHHHHHhCCCCCCcHHHH-
Q 008705 240 FLASAYQELRMHKESLTKYEYLQGT-FSFS-N--YIQAQ--IAKAQYSL---REFEQVEVIFEELLRNDPYRVDDMDMY- 309 (557)
Q Consensus 240 ~la~~~~~~~~~~~A~~~~~~~l~~-~p~~-~--~~~~~--la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~- 309 (557)
.++....-..++..|++.+.--.+. ++.. + .+.+. .+.++... .+...+.....++.+....++.-...+
T Consensus 132 QLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk 211 (629)
T KOG2300|consen 132 QLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK 211 (629)
T ss_pred HHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 4566666667777776664322211 1111 1 11111 22222222 223344444444444333322211111
Q ss_pred ------HHHHH-hccchhHHHHHHHHH----HhhCCC------------ChhH--H------HHHH-----HHHhhhCch
Q 008705 310 ------SNVLY-AKECFSALSYLAHRV----FMTDKY------------RPES--C------CIIG-----NYYSLKGQH 353 (557)
Q Consensus 310 ------~~~~~-~~~~~~~~~~~~~~~----~~~~~~------------~~~~--~------~~la-----~~~~~~g~~ 353 (557)
...++ ..|+........+++ ..+.+. .+.. | +.+. ..-...|-+
T Consensus 212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~ 291 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF 291 (629)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Confidence 11111 123332222222211 111110 1110 0 1111 111235667
Q ss_pred HHHHHHHHHHHhcCcC------CHHH--------HHHHhHHHHhcCCchHHHHHHHHHHhhC---CC-------ChHHHH
Q 008705 354 EKSVVYFRRALKLDKN------YLSA--------WTLMGHEYVEMKNTPAAIDAYRRAVDIN---PR-------DYRAWY 409 (557)
Q Consensus 354 ~~A~~~~~~al~~~p~------~~~~--------~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~-------~~~~~~ 409 (557)
++|.++-++++..... .... +-.+..+-.-.|++.+|++....+.+.. |. .+...+
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~ 371 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM 371 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Confidence 7777777777654211 1111 2345556667889999988887776643 33 245667
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh----------HH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPN-D--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE----------AI 476 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~--~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------~~ 476 (557)
.+|......+.++.|...|..+.+.-.. + ..+-.++|..|.. .|+-+.-.+.++.. .|.+ ..
T Consensus 372 LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~--~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 372 LLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR--IGDAEDLYKALDLI---GPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH--hccHHHHHHHHHhc---CCCCCCcchHHHHHHH
Confidence 7788778888899999999988876432 2 2244678888888 77766554444433 3331 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
+++..|...+.++++.||...+.+.++.. +......-..-.+..|+.+....|+..++.+..+-++++
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 67777888888999999999999988832 111111223445666888888889999888887777665
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.16 E-value=5.4e-05 Score=70.87 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=83.5
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM-MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
+|..+.....+.+..+.|...|.+|.+..+....+|...|.+... .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456666666666667777777777775555566777777777555 4444447777777777777777777777777777
Q ss_pred HhcCcHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 452 EQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.|+.+.|..+|++++..-|... .+|......-...|+.+....+.+++.+
T Consensus 83 --~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 --LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp --TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred --hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776655544 3566666666666776666666666666
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.15 E-value=5.7e-06 Score=52.74 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKS 218 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 218 (557)
|.+++.+|..+...|++++|++.|+++++.+|++..+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999999988743
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.12 E-value=0.0033 Score=60.00 Aligned_cols=32 Identities=13% Similarity=0.006 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
....++.+..- .|++++|++.+++++...|..
T Consensus 307 d~ATl~Ea~vL--~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 307 DVATLLEASVL--AGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHhhcCCcc
Confidence 33445555555 666666666666666665544
No 233
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.11 E-value=0.012 Score=57.62 Aligned_cols=219 Identities=11% Similarity=0.048 Sum_probs=156.8
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHhhhCc--------------hHHHHHHHHHHHhcCc-CCHHHHHHHhHHHHhcC-
Q 008705 322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ--------------HEKSVVYFRRALKLDK-NYLSAWTLMGHEYVEMK- 385 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~- 385 (557)
.....++++..-+..|++|+..+.++...++ .+++..+|++++..-- .+...++.++..--..-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3455667777788899999888777777666 6788888888876432 23344444444322222
Q ss_pred --CchHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcHHHHH
Q 008705 386 --NTPAAIDAYRRAVDINPRDY-RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHMLEEAI 461 (557)
Q Consensus 386 --~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~~~A~ 461 (557)
..+.-...+.+++.+...++ -+|..+-..-.+..-...|...|.++-+..-....++..-|.+ |.. .++..-|.
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c--skD~~~Af 421 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC--SKDKETAF 421 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh--cCChhHHH
Confidence 36667778888877654443 3455566666666677888999998876543332333333332 223 79999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705 462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG-PNMVEALIFLATHCRAHGRFEEAEVYCT 540 (557)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 540 (557)
+.|+-.+...++.+..-......+...++-..|...|++++.. ... .....+|..+-.....-|+...+++.-+
T Consensus 422 rIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-----~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 422 RIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-----VLSADKSKEIWDRMLEYESNVGDLNSILKLEK 496 (656)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-----cCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999999999999889999999999999999999999982 012 2345788888888899999999998887
Q ss_pred HHhccCC
Q 008705 541 RLLDYTG 547 (557)
Q Consensus 541 ~al~~~~ 547 (557)
+-....|
T Consensus 497 R~~~af~ 503 (656)
T KOG1914|consen 497 RRFTAFP 503 (656)
T ss_pred HHHHhcc
Confidence 7766655
No 234
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.1e-05 Score=67.84 Aligned_cols=93 Identities=24% Similarity=0.176 Sum_probs=83.9
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 455 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 455 (557)
.-|..++..++|..|+.+|.+++.++|..+..|.+.+.++++.++++.+.....+++++.|+.....+.+|.+... ..
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~--s~ 92 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ--SK 92 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh--hc
Confidence 4466677778899999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHHHhc
Q 008705 456 MLEEAIKCYRRAANC 470 (557)
Q Consensus 456 ~~~~A~~~~~~al~~ 470 (557)
.|++|+.+++++..+
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999999665
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.10 E-value=7.7e-06 Score=52.13 Aligned_cols=39 Identities=33% Similarity=0.680 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
|..+|.+|..+|++++|+..|+++++.+|+++.+|..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 334444444444444444444444444444444444333
No 236
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=98.08 E-value=0.0039 Score=61.04 Aligned_cols=140 Identities=21% Similarity=0.169 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC----CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc---C------
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP----NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC---N------ 471 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~---~------ 471 (557)
...|...+.+..+.|+++.|...+.++...++ ..+.+.+..+.++.. .|+..+|+..++..+.. .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~--~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA--QGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH--cCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34455555555555555555555555444331 123444444555555 55555555555444440 0
Q ss_pred -------------------------CChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705 472 -------------------------DSEAIALNQLAKLHHAL------GRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520 (557)
Q Consensus 472 -------------------------p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (557)
.....++..+|...... +..+++...|.++++ ..|....+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~k~~~ 296 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK-------LDPSWEKAWH 296 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-------hChhHHHHHH
Confidence 01134566677776666 788899999999998 7888999999
Q ss_pred HHHHHHHHcCC-----------------HHHHHHHHHHHhccCCCchhhh
Q 008705 521 FLATHCRAHGR-----------------FEEAEVYCTRLLDYTGPVSFTH 553 (557)
Q Consensus 521 ~la~~~~~~g~-----------------~~~A~~~~~~al~~~~~~~~~a 553 (557)
.+|..+.+.=+ ...|+..|-+++..++......
T Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~~ 346 (352)
T PF02259_consen 297 SWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQD 346 (352)
T ss_pred HHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHHH
Confidence 99988765411 1358999999999987644433
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.08 E-value=0.00049 Score=65.51 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=79.8
Q ss_pred HHHHHHHHHHH---hCChHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhHH-------hcCcHHHHHHHHHHHHhcCCChH
Q 008705 407 AWYGLGQAYEM---MHMPLYALHYFRK-SVFLQPNDSRLWIAMAQCYETE-------QLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 407 ~~~~l~~~~~~---~~~~~~A~~~~~~-a~~~~p~~~~~~~~l~~~~~~~-------~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
+.+..|.++.+ .|+.++|+..+.. .....+.+++++..+|.+|..- .....++|+..|.++...+|+ .
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~ 259 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-Y 259 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-c
Confidence 33344444444 4444445544444 2223334444444444444320 022367788888888887753 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHh-hhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDL----ERMEA-EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al----~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
..-.+++.++...|...+....+++.. ..+.+ .......+...+-.++.+..-.|++++|...+++++++.|+.
T Consensus 260 Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 260 YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344566666666665444443333333 11111 111233455666678888889999999999999999998764
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.06 E-value=0.01 Score=56.54 Aligned_cols=366 Identities=12% Similarity=0.050 Sum_probs=216.9
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcC-----------CC
Q 008705 164 ELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLN-----------LN 232 (557)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~-----------~~ 232 (557)
.|..-.+.+|.|...||.+...+-.+|.+++-.+.|++...-.|.-..+|.....-.-+..++.++. .-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 4555566789999999999999999999999999999999999999999986654322222222210 11
Q ss_pred hhHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---------hcccHHHHHHHHH
Q 008705 233 NHWMKDYFLASAYQELRM----------HKESLTKYEYLQGTFSFSNYIQAQIAKAQY---------SLREFEQVEVIFE 293 (557)
Q Consensus 233 ~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 293 (557)
+.|+.+ .-|.+.-+ .-+|.+..-...-..|.+...|...+..+. .+.+.+.-...|.
T Consensus 110 dLW~lY----l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 110 DLWMLY----LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hHHHHH----HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 233322 22222211 123333333333356777666766655543 3445667777888
Q ss_pred HHHHhCCCCCCcH-HHHHHHHHhc---------c----chhHHHHHHHHHH-------hhCCCChhH-----------HH
Q 008705 294 ELLRNDPYRVDDM-DMYSNVLYAK---------E----CFSALSYLAHRVF-------MTDKYRPES-----------CC 341 (557)
Q Consensus 294 ~~l~~~p~~~~~~-~~~~~~~~~~---------~----~~~~~~~~~~~~~-------~~~~~~~~~-----------~~ 341 (557)
+++...-.+.+-+ ..+-+.-... + -+-.+....+... ..+|.+-.. |.
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 8887654443221 1111110000 0 1111222222211 112111111 11
Q ss_pred HHHHHH-----hhhCc-hHHHH-HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 342 IIGNYY-----SLKGQ-HEKSV-VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 342 ~la~~~-----~~~g~-~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
.....- ...|+ +.+-+ -.+++++..-|-.++.|+-....+...++-+.|+...++++...|. ....++.+
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~ 342 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEY 342 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHH
Confidence 111111 11111 22222 3467777777888899999999899999999999999998887775 55667777
Q ss_pred HHHhCChHHHHHHHHHHHhc------------------CCC-CHH-----------HHHHHHHHHhHHhcCcHHHHHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFL------------------QPN-DSR-----------LWIAMAQCYETEQLHMLEEAIKCY 464 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~------------------~p~-~~~-----------~~~~l~~~~~~~~~~~~~~A~~~~ 464 (557)
|...++-+.-..+|+++++- +|. .++ +|+.+-..-.+ ..-.+.|...|
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r--~~Gl~aaR~~F 420 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLR--KRGLEAARKLF 420 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHH--HhhHHHHHHHH
Confidence 77777766666666655421 111 011 22222222233 44567788888
Q ss_pred HHHHhcCCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 465 RRAANCNDSEAIALNQLAKL-HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
-++-+..-....++..-|.+ +...|++.-|...|+-.+. ..|+++......-..+...|+-..|...|++++
T Consensus 421 ~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~-------~f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 421 IKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL-------KFPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH-------hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 88766542333444433433 5678999999999999998 577777777777778888999999999999776
Q ss_pred cc
Q 008705 544 DY 545 (557)
Q Consensus 544 ~~ 545 (557)
..
T Consensus 494 ~r 495 (660)
T COG5107 494 ER 495 (660)
T ss_pred HH
Confidence 54
No 239
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=0.015 Score=66.55 Aligned_cols=162 Identities=15% Similarity=0.074 Sum_probs=109.0
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhh---C----CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDI---N----PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
|.+....-....+..+-+-.+++++-. + ..-.+.|...|++....|+++.|..+.-+|.+.. -+.+....|
T Consensus 1632 W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~A 1709 (2382)
T KOG0890|consen 1632 WKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERA 1709 (2382)
T ss_pred HHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHH
Confidence 443333322333355666666665532 2 2337889999999999999999999999998876 567889999
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHhcC-CC----------h------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHh
Q 008705 447 QCYETEQLHMLEEAIKCYRRAANCN-DS----------E------AIALNQLAKLHHALGRD--EEAAFYYKKDLERMEA 507 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~ 507 (557)
..+.. .|+-..|+..+++.+..+ |+ . ..+...++.-....|++ ++-+++|..+.+
T Consensus 1710 K~lW~--~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~a---- 1783 (2382)
T KOG0890|consen 1710 KLLWQ--TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKA---- 1783 (2382)
T ss_pred HHHHh--hccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH----
Confidence 99999 999999999999999653 21 1 12344455555555653 244567777777
Q ss_pred hhcCCcchHHHHHHHHHHHH------------HcCCHHH---HHHHHHHHhccC
Q 008705 508 EEREGPNMVEALIFLATHCR------------AHGRFEE---AEVYCTRLLDYT 546 (557)
Q Consensus 508 ~~~~~~~~~~~~~~la~~~~------------~~g~~~~---A~~~~~~al~~~ 546 (557)
..|.....++.+|..|. +.|++.. |+..|.+++..+
T Consensus 1784 ---il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1784 ---ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred ---HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence 56666666666775543 3456555 666777777764
No 240
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.02 E-value=1.2e-05 Score=76.90 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=100.0
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP 421 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 421 (557)
..++-....++++.|+..|.+|++++|+++..+-+.+..+++.+++..|+..+.++++.+|....+|+..|.+...++++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 35666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
.+|+..|+....+.|+++.+...+..|-..
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 999999999999999999888777766544
No 241
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0066 Score=63.48 Aligned_cols=316 Identities=13% Similarity=0.049 Sum_probs=164.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHH----HHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705 182 YGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSID----ILNSLNLNNHWMKDYFLASAYQELRMHKESLTK 257 (557)
Q Consensus 182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~----~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~ 257 (557)
.|.+....+-|++|...|++- ..+..+..-|..-....+ .......|.-|.. +|.+..+.|...+|++.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsq---lakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQ---LAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHH---HHHHHHhcCchHHHHHH
Confidence 456666677777777777653 334444443322222111 1122233333332 35555566666666665
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCCh
Q 008705 258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRP 337 (557)
Q Consensus 258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (557)
|-++ +++..+........+.|.|++-+.++.-+.+.... +..-..+.-.+...++..++..+. ..|+.+
T Consensus 1127 yika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi-----~gpN~A 1195 (1666)
T KOG0985|consen 1127 YIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFI-----AGPNVA 1195 (1666)
T ss_pred HHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHh-----cCCCch
Confidence 5554 34444555555555666666666655555443221 111111222222333333332221 112222
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
-.-.+|+-.+..|.|+.|.-+|.. ..-|..++..+..+|+|..|+..-++| ++...|...+.++..
T Consensus 1196 -~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1196 -NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVD 1261 (1666)
T ss_pred -hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhc
Confidence 122355555556666655555432 334556666666777777777666665 345566666665555
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 497 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 497 (557)
.+.|.-|.-+=-..+ -.++-+-.+...|.. .|-+++-+..++.++-+...+...+..||.+|.+- ++++-.+.
T Consensus 1262 ~~EFrlAQiCGL~ii----vhadeLeeli~~Yq~--rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNII----VHADELEELIEYYQD--RGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hhhhhHHHhcCceEE----EehHhHHHHHHHHHh--cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 555443321110000 123445566777878 99999999999999988887788888888888765 56666666
Q ss_pred HHHHHHHHHhhh-cCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705 498 YKKDLERMEAEE-REGPNMVEALIFLATHCRAHGRFEEAE 536 (557)
Q Consensus 498 ~~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~ 536 (557)
++-...+..-.. -...+....|..+..+|.+-..|+.|.
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 555444211000 001233455666666666666666554
No 242
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.017 Score=55.61 Aligned_cols=365 Identities=12% Similarity=0.042 Sum_probs=215.5
Q ss_pred hHHHHHHHHhhhhcCCCCC---hhHHHHHHHHH-HhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCC
Q 008705 157 ELISLERELSTSWKNGTVD---PFGLYLYGIVL-KDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLN 232 (557)
Q Consensus 157 ~l~~~~~~l~~~~~~~~~~---~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~ 232 (557)
++..+.+.++....-.+.+ +.....+|.++ +-.+|++.|...++++..+...-+..+.
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd------------------ 85 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD------------------ 85 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh------------------
Confidence 4445555555554444433 45677777665 5588999999999998765433222210
Q ss_pred hhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CCCCCC--
Q 008705 233 NHWMKDYFLASAYQELR-MHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRN-DPYRVD-- 304 (557)
Q Consensus 233 ~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~-- 304 (557)
..+...-.++.+|.... .+..+...+.+++++....+ ...++++..+.-..++..|.+.+.--... ++-...
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~yl 165 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYL 165 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHH
Confidence 11222334688888887 78889999999999866654 35689999999999999999884322211 111110
Q ss_pred -cHHHHH--HHHHhccc---hhHHHHHHHHHHhhCCCCh---hH-----HHHHHHHHhhhCchHHHHHHHHHH---Hhc-
Q 008705 305 -DMDMYS--NVLYAKEC---FSALSYLAHRVFMTDKYRP---ES-----CCIIGNYYSLKGQHEKSVVYFRRA---LKL- 366 (557)
Q Consensus 305 -~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~-----~~~la~~~~~~g~~~~A~~~~~~a---l~~- 366 (557)
....++ .++....+ ...+...+..+......++ +. .+.--..|...|+...+...+++. +..
T Consensus 166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence 111111 12222223 3334444444444333222 21 112233455667776666555543 221
Q ss_pred CcC------------CH--HHHHHH----hHHH-------HhcCCchHHHHHHHHHHhhCCC------Ch--------HH
Q 008705 367 DKN------------YL--SAWTLM----GHEY-------VEMKNTPAAIDAYRRAVDINPR------DY--------RA 407 (557)
Q Consensus 367 ~p~------------~~--~~~~~l----~~~~-------~~~~~~~~A~~~~~~al~~~p~------~~--------~~ 407 (557)
.+. .+ -.|.-. +.+| +-.|-+++|.++-++++....+ .. ..
T Consensus 246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 111 00 111110 1111 1345677777777777654211 12 22
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC-h--
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFL---QPN-------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS-E-- 474 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~-------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~-~-- 474 (557)
+-.+..+-...|++.+|+.....+.+. .|. .+.+...+|..... .+.++.|...|..+.+.... +
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~s--v~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHS--VNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhh--cchHHHHHHHHHHHHHhhhHHHHH
Confidence 344566667789999999888777654 343 24466778887777 89999999999999887433 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP-----NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
..+-.++|.+|...|+-+.-. ++++.+...+ ..+ ....+++..|...+.++++.||....++.++..
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y----~~ld~i~p~n-t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLY----KALDLIGPLN-TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHH----HHHHhcCCCC-CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 335677999999988755433 3343221110 001 124567778888999999999999999999875
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00014 Score=63.03 Aligned_cols=112 Identities=17% Similarity=0.053 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhc--------cCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVN--------SYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE 247 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~ 247 (557)
..++...|.-+++.|+|.+|...|..|+. .-|..++ |..|..... ....+.+.|++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e-W~eLdk~~t--------------pLllNy~QC~L~ 242 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE-WLELDKMIT--------------PLLLNYCQCLLK 242 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH-HHHHHHhhh--------------HHHHhHHHHHhh
Confidence 45788899999999999999999998873 4466554 666643322 223456889999
Q ss_pred HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705 248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR 302 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 302 (557)
.|+|-++++....++...|.+..+++..|.++...=+..+|...|.++++++|.-
T Consensus 243 ~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 243 KEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999999999999999999999999999999999999964
No 244
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.92 E-value=1.5e-05 Score=76.12 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=101.2
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 455 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 455 (557)
.-+..++..+.++.|+..|.++++++|+.+..+.+.+.++.+.+++..|+.-+.++++.+|....+|+..|.+... .+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~--l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA--LG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh--HH
Confidence 4466777889999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 456 MLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 456 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
++.+|...|++...+.|+++.+...+..|-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999999998877766643
No 245
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.91 E-value=1.2e-05 Score=47.68 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=12.8
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705 395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYA 424 (557)
Q Consensus 395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 424 (557)
+++++++|+++.+|+++|.+|...|++++|
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444444444443
No 246
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0062 Score=53.82 Aligned_cols=219 Identities=11% Similarity=0.054 Sum_probs=142.4
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhh-hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch-HHHHHHHHHHhh
Q 008705 323 SYLAHRVFMTDKYRPESCCIIGNYYSL-KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP-AAIDAYRRAVDI 400 (557)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~ 400 (557)
..+...++..+|-+-.+|...-.++.. ..+..+-+.++...++-+|++..+|...-.+....|++. .-++..+.++..
T Consensus 63 l~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~ 142 (318)
T KOG0530|consen 63 LQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD 142 (318)
T ss_pred HHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc
Confidence 333444445555555555444444333 335677788888999999999999998888888888887 788889999999
Q ss_pred CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH----hcCcHHHHHHHHHHHHhcCCChHH
Q 008705 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE----QLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
+.++..+|...-.+....+.++.-+.+..+.++.+-.+-.+|+..-.+.... ..-..+.-+.+..+.+...|++..
T Consensus 143 DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS 222 (318)
T KOG0530|consen 143 DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES 222 (318)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999998889999999999998887766656665432111110 012344556777888888999999
Q ss_pred HHHHHHHHHHH-cC--CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH------HcCCHH---HHHHHHHHHh-
Q 008705 477 ALNQLAKLHHA-LG--RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR------AHGRFE---EAEVYCTRLL- 543 (557)
Q Consensus 477 ~~~~la~~~~~-~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~------~~g~~~---~A~~~~~~al- 543 (557)
+|..|.-++.. .| .+..-......... ......|..+-.+..+|. +.+.-+ +|...|+..-
T Consensus 223 aWnYL~G~l~~d~gl~s~s~vv~f~~~l~~------~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~ 296 (318)
T KOG0530|consen 223 AWNYLKGLLELDSGLSSDSKVVSFVENLYL------QLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAI 296 (318)
T ss_pred HHHHHHHHHHhccCCcCCchHHHHHHHHhh------ccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 99888888876 44 12333333333321 023344555555555552 223333 5666666655
Q ss_pred ccCC
Q 008705 544 DYTG 547 (557)
Q Consensus 544 ~~~~ 547 (557)
+.+|
T Consensus 297 ~~Dp 300 (318)
T KOG0530|consen 297 KVDP 300 (318)
T ss_pred ccCc
Confidence 5554
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.88 E-value=1.2e-05 Score=47.55 Aligned_cols=32 Identities=41% Similarity=0.451 Sum_probs=16.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495 (557)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 495 (557)
|+++++++|+++.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 248
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.87 E-value=0.054 Score=57.10 Aligned_cols=201 Identities=12% Similarity=-0.001 Sum_probs=116.2
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCCH--------------------------HHHHHHhHHHHhcCCchHHHHHHH
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYL--------------------------SAWTLMGHEYVEMKNTPAAIDAYR 395 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------------------------~~~~~l~~~~~~~~~~~~A~~~~~ 395 (557)
.-|......+..++|.+++.++++.-.+.. ......+.+.+-.+++..|.....
T Consensus 306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~ 385 (608)
T PF10345_consen 306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELE 385 (608)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 335555666777788888888875421100 123456667778899999999888
Q ss_pred HHHhhC---CC------ChHHHHHHHHHHHHhCChHHHHHHHH--------HHHhcCCCCH---HHHHHHHHHHhHHhcC
Q 008705 396 RAVDIN---PR------DYRAWYGLGQAYEMMHMPLYALHYFR--------KSVFLQPNDS---RLWIAMAQCYETEQLH 455 (557)
Q Consensus 396 ~al~~~---p~------~~~~~~~l~~~~~~~~~~~~A~~~~~--------~a~~~~p~~~---~~~~~l~~~~~~~~~~ 455 (557)
.+.... |. .+..++..|..+...|+.+.|+.+|. .+....+.+. -+..++..++.. .+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~--~~ 463 (608)
T PF10345_consen 386 FMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQY--ES 463 (608)
T ss_pred HHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHh--hc
Confidence 777643 22 36778999999999999999999998 3333333322 133455666655 44
Q ss_pred cHHH----HHHHHHHHHhcCCChHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 008705 456 MLEE----AIKCYRRAANCNDSEAI-----ALNQLAKLHH--ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT 524 (557)
Q Consensus 456 ~~~~----A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 524 (557)
.... +...+++.-....+.+. ++..+-.++. ..-...++...+..+++...+.....--..-++..++.
T Consensus 464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~ 543 (608)
T PF10345_consen 464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH 543 (608)
T ss_pred ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3222 44444433222111111 2222222221 12234588888888888541111122223344555666
Q ss_pred HHHHcCCHHHHHHHHHHHhcc
Q 008705 525 HCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 525 ~~~~~g~~~~A~~~~~~al~~ 545 (557)
.++ .|+..+......++...
T Consensus 544 ~lf-~~~~~e~~~~s~~a~~~ 563 (608)
T PF10345_consen 544 RLF-EGDVGEQAKKSARAFQL 563 (608)
T ss_pred HHH-cCCHHHHHHHHHHHHHH
Confidence 666 78888877777766654
No 249
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.86 E-value=0.00092 Score=65.42 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=87.3
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 416 EMMHMPLYALHYFRKSVFLQPNDSR-LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
...|+...|+.++..++...|.... ...+++.+... .|...+|-.++.+++.+....|..++.+|..+..+.+.+.|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~--~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH--YGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH--hhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3467888899999999988886543 57889999998 89899999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH
Q 008705 495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCR 527 (557)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 527 (557)
++.|+.+++ .+|.++.+-..|-.+-.
T Consensus 696 ~~~~~~a~~-------~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALK-------LTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHh-------cCCCChhhHHHHHHHHH
Confidence 999999999 67888777666554443
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.85 E-value=0.044 Score=55.45 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=104.9
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCC--HHH------HHHHhHHHH----hcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNY--LSA------WTLMGHEYV----EMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~------~~~l~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
.+.--.|+-+.++..+.++.+. ++- +-+ |+.....+. ...+.+.|.+.+.......|+..-..+..|
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g 274 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG 274 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3333456777777777776652 221 111 111111111 234567788888888888888888888888
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-AIALNQLAKLHHA 487 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 487 (557)
.++...|+.++|+..|++++.....- .-+++.++.++.. +++|++|..+|.+..+.+.-. ....+..|-++..
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~--~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF--QHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH--HchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 88888888888888888877433222 2356778888888 888888888888888765443 3455667778888
Q ss_pred cCCH-------HHHHHHHHHHHHHHH
Q 008705 488 LGRD-------EEAAFYYKKDLERME 506 (557)
Q Consensus 488 ~g~~-------~~A~~~~~~al~~~~ 506 (557)
.|+. ++|.++|.++-....
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHh
Confidence 8888 777777777766443
No 251
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.85 E-value=0.0067 Score=57.62 Aligned_cols=189 Identities=21% Similarity=0.188 Sum_probs=133.9
Q ss_pred hhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc----CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH----hC
Q 008705 348 SLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM----KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM----MH 419 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~ 419 (557)
...+++..|...+.++-.. ....+...++.+|... .+..+|...|+.+. ...++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3456777888888777652 2336677777777653 35777888888544 44567788888888876 45
Q ss_pred ChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhHH---hcC--cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cC
Q 008705 420 MPLYALHYFRKSVFLQPND-SRLWIAMAQCYETE---QLH--MLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LG 489 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~---~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g 489 (557)
+..+|..+|+++....-.. ..+...+|.+|..+ ..- +...|...|.++.... ++.+.+.+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 8889999999988875443 34477788877761 001 3337888888887765 67788888888755 34
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhccCCCchhh
Q 008705 490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG---------------RFEEAEVYCTRLLDYTGPVSFT 552 (557)
Q Consensus 490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~~~~~ 552 (557)
++.+|..+|.++.+ ... ....+.++ ++...| +...|..++.++....++....
T Consensus 206 d~~~A~~wy~~Aa~-------~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 273 (292)
T COG0790 206 DLKKAFRWYKKAAE-------QGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACE 273 (292)
T ss_pred CHHHHHHHHHHHHH-------CCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence 88899999999988 333 77788888 666665 8888899998888776555443
No 252
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.05 Score=57.30 Aligned_cols=225 Identities=11% Similarity=0.081 Sum_probs=121.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
-+.|.+|-.+|.+..+.|...+|++.|-++ ++++.+.+. ..+..+.|.|+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eV-------------------------i~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEV-------------------------IDVASRTGKYE 1150 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHH-------------------------HHHHHhcCcHH
Confidence 466889999999999999999999999886 333444444 44555666677
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705 253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332 (557)
Q Consensus 253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (557)
+-+.++..+.+... .+.+-..+..+|.+.++..+-.+.. ..|+. ......+.-.+..+.++.+.-++..
T Consensus 1151 dLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AGPNV-ANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cCCCc-hhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 76666665544211 2222333334444455544433221 22322 2334445555555555555444433
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
..-|..++..+...|+|..|...-++| ++...|-..+......+.+.-|--+--..+ -+.+-+-.+.
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----vhadeLeeli 1286 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----VHADELEELI 1286 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----EehHhHHHHH
Confidence 234555666677777777777766665 234455555555555444443321110000 0122233445
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
..|...|-|++-+..++.++.+..-.-.++..+|.+|.+
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 555555555555555555555544444455555555543
No 253
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.82 E-value=0.021 Score=59.09 Aligned_cols=281 Identities=17% Similarity=0.099 Sum_probs=183.9
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHh-----CCCCCCcHHHHHHHHHhcc---
Q 008705 251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL-----REFEQVEVIFEELLRN-----DPYRVDDMDMYSNVLYAKE--- 317 (557)
Q Consensus 251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~--- 317 (557)
...|...++.+.+. .+......+|.++..- .|.+.|+.+|+.+... .-..+.+...++.++....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677777776443 4566677777777654 6788999999888761 1114456667777776643
Q ss_pred --chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC---chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc----CCch
Q 008705 318 --CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG---QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM----KNTP 388 (557)
Q Consensus 318 --~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~ 388 (557)
+...+..++..+.... ++...+.+|.++..-. +..+|..+|..|.+. .+..+.+.++.+|..- .+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 4455666665544443 5677778888877655 567888998888754 5677888888877643 4678
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhH--HhcCcHHHHH
Q 008705 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMM-HMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYET--EQLHMLEEAI 461 (557)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~--~~~~~~~~A~ 461 (557)
.|..++.++.+.+ .+.+.+.++..+..- +.++.+...+.......-..+. .+......... ....+...+.
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 8999999988877 455555555555433 7777776666655544322211 11111111111 0012455666
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc---CCHHH
Q 008705 462 KCYRRAANCNDSEAIALNQLAKLHHAL----GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH---GRFEE 534 (557)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~ 534 (557)
..+.++.. ..++.+...+|.+|..- .+++.|...|.++.. .. +...+++|.++..- ..+..
T Consensus 460 ~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~-------~~---~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 460 SLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASE-------QG---AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred HHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH-------hh---hHHHhhhhhHHhcCcCcchhHH
Confidence 66666654 34567888888888765 368999999999887 22 88999999998742 22789
Q ss_pred HHHHHHHHhccCCCchh
Q 008705 535 AEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 535 A~~~~~~al~~~~~~~~ 551 (557)
|..+|.++.+.+.....
T Consensus 528 a~~~~~~~~~~~~~~~~ 544 (552)
T KOG1550|consen 528 AKRYYDQASEEDSRAYL 544 (552)
T ss_pred HHHHHHHHHhcCchhhh
Confidence 99999999887655443
No 254
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.012 Score=52.18 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHhcc-chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchH-HHHHHHHHHHh
Q 008705 288 VEVIFEELLRNDPYRVDDMDMYSNVLYAKE-CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE-KSVVYFRRALK 365 (557)
Q Consensus 288 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~ 365 (557)
|+.+...++..+|.+..+|...-.++...+ +..+-...+..++..+|.+-++|...-.+....|++. .-+++.+.++.
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~ 141 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD 141 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence 444444445555555444444444443322 2333334444445555555566665555666666666 66677777777
Q ss_pred cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-h-----CChHHHHHHHHHHHhcCCCCH
Q 008705 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM-M-----HMPLYALHYFRKSVFLQPNDS 439 (557)
Q Consensus 366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~-----~~~~~A~~~~~~a~~~~p~~~ 439 (557)
.+.++..+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...--+... . -..+.-+.+..+.+.+.|++.
T Consensus 142 ~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~Ne 221 (318)
T KOG0530|consen 142 DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNE 221 (318)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCc
Confidence 7777777777777777777777777777777777666665555432211111 1 122344566667777778887
Q ss_pred HHHHHHHHHHhHHhcC--cHHHHHHHHHHHH-hcCCChHHHHHHHHHHH
Q 008705 440 RLWIAMAQCYETEQLH--MLEEAIKCYRRAA-NCNDSEAIALNQLAKLH 485 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~--~~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 485 (557)
.+|..+.-++.. ..| .+.+-.......+ ......|..+-.+..+|
T Consensus 222 SaWnYL~G~l~~-d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 222 SAWNYLKGLLEL-DSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred cHHHHHHHHHHh-ccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 788777766653 022 2334444444443 33334455555555555
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.81 E-value=0.0097 Score=58.28 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=51.1
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC----CHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
.......|...+.+....|.++.|...+.++...++. .+.+.+..+.+....|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345667788888888888888888888888775421 456677778888888888888888887776
No 256
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00066 Score=59.08 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
...+.+.++++...|+|-++++.....+...|.+..+++..|.+... .=+..+|...|.++++++|.-..
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa--~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA--VWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh--hcCHHHHHHHHHHHHhcChhhHH
Confidence 44567778888888888888888888888888888888888888877 77788888888888888876543
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.75 E-value=5.8e-05 Score=44.95 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN 209 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (557)
|.+++.+|.++...|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 258
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.73 E-value=4.6e-05 Score=45.41 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN 209 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (557)
+.+|+.+|.++...|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.72 E-value=0.0016 Score=54.48 Aligned_cols=123 Identities=18% Similarity=0.111 Sum_probs=80.0
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP-LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 456 (557)
|......++.+.++..+++++.+...+.-.-..- ..+ ......++.. ...+...++..+.. .|+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~--~~~ 77 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLE--AGD 77 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHH--TT-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh--ccC
Confidence 4445566677777777777777654331110000 111 1111222222 13456778888888 999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 515 (557)
Q Consensus 457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (557)
+++|+..+++++..+|.+..++..+..+|...|+..+|+..|+++...+....+..|..
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 99999999999999999999999999999999999999999999998877666666643
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.70 E-value=0.045 Score=51.30 Aligned_cols=235 Identities=14% Similarity=0.059 Sum_probs=141.3
Q ss_pred HhcccHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC-chHHHH
Q 008705 280 YSLREFEQVEVIFEELLRND-PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG-QHEKSV 357 (557)
Q Consensus 280 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~ 357 (557)
...|+++.|..++.++-... ...++....+ ...++..|......+ +++.|.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~L---------------------------a~~~yn~G~~l~~~~~~~~~a~ 56 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEEL---------------------------ARVCYNIGKSLLSKKDKYEEAV 56 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHH---------------------------HHHHHHHHHHHHHcCCChHHHH
Confidence 46788999999998887655 2222222222 356677888888899 999999
Q ss_pred HHHHHHHhc----Cc---CC-------HHHHHHHhHHHHhcCCch---HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705 358 VYFRRALKL----DK---NY-------LSAWTLMGHEYVEMKNTP---AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420 (557)
Q Consensus 358 ~~~~~al~~----~p---~~-------~~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 420 (557)
..++++.++ .+ .. ..++..++.++...+.++ +|....+.+-...|+.+..+...-.+..+.++
T Consensus 57 ~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~ 136 (278)
T PF08631_consen 57 KWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD 136 (278)
T ss_pred HHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC
Confidence 999999887 21 11 244677888998888754 45556666666778777777555566666899
Q ss_pred hHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc--CCChHHHHHH---HHHHHHHcC--CHH
Q 008705 421 PLYALHYFRKSVFLQP-NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDSEAIALNQ---LAKLHHALG--RDE 492 (557)
Q Consensus 421 ~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~---la~~~~~~g--~~~ 492 (557)
.+++.+.+.+++..-+ .....-..+..+... .......|..++...+.. .|.... +.. +..++...+ +..
T Consensus 137 ~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l-~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~ 214 (278)
T PF08631_consen 137 EEEYEEILMRMIRSVDHSESNFDSILHHIKQL-AEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLS 214 (278)
T ss_pred hhHHHHHHHHHHHhcccccchHHHHHHHHHHH-HhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCcccc
Confidence 9999999999988654 222222222222111 034456777777777653 232221 222 122222222 222
Q ss_pred HH--HHHHHHHHHHHHhhh--cCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 493 EA--AFYYKKDLERMEAEE--REGPNM----VEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 493 ~A--~~~~~~al~~~~~~~--~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
.. ++.....++...... +..+.. ...+.+.|.-.++.++|++|..+|+-++
T Consensus 215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 333333333222111 122222 2344557888999999999999999776
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.69 E-value=6.2e-05 Score=44.83 Aligned_cols=29 Identities=34% Similarity=0.622 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
|+.+|.+|..+|++++|+..|+++++++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 33344444444444444444444444333
No 262
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.68 E-value=0.0068 Score=58.01 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH---cCCHHHHHHHH
Q 008705 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA---LGRDEEAAFYY 498 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~ 498 (557)
+.-+.+|++|++.+|++...+..+-.+..+ ....++..+-+++++..+|+++..|...-..... .-.+......|
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~--~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEK--VWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445667777777777777777766666666 6677777777777777777776665544333322 23466777777
Q ss_pred HHHHHHHHhhhcC-----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 499 KKDLERMEAEERE-----------GPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 499 ~~al~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
.+++..+...... ......++..+.....+.|-.+.|...++-.++++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 7777755432221 12235667778888999999999999999999875
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.61 E-value=0.00013 Score=43.34 Aligned_cols=29 Identities=45% Similarity=0.734 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
|+.+|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33344444444444444444444443333
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0085 Score=54.30 Aligned_cols=161 Identities=18% Similarity=0.065 Sum_probs=90.4
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH-HHHHHHHh
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW-IAMAQCYE 450 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~-~~l~~~~~ 450 (557)
+.-...+......|++.+|...|..++...|.+..+...++.+|...|+.+.|...+...-.....+...- ......+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 33444555666777777777777777777777777777777777777777777766654322221111111 01111222
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 530 (557)
+ .....+ ...+++.+..+|++..+.+.+|..+...|+.++|.+.+-..++.- ..-.+..+...+-.++...|
T Consensus 215 q--aa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d-----~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 Q--AAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD-----RGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred H--HhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----ccccCcHHHHHHHHHHHhcC
Confidence 2 222221 123444555677777777777777777777777777776666521 22344555566666666666
Q ss_pred CHHHHHHHHH
Q 008705 531 RFEEAEVYCT 540 (557)
Q Consensus 531 ~~~~A~~~~~ 540 (557)
.-+.+...++
T Consensus 287 ~~Dp~~~~~R 296 (304)
T COG3118 287 PADPLVLAYR 296 (304)
T ss_pred CCCHHHHHHH
Confidence 4433333333
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0064 Score=51.45 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCCHH---HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHH
Q 008705 424 ALHYFRKSVFLQPNDSR---LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFY 497 (557)
Q Consensus 424 A~~~~~~a~~~~p~~~~---~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 497 (557)
.....++...-++.... .-..++..+.. .|++++|+..++.++....+. ..+-.+||.+...+|.+++|+..
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve--~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVE--ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33344444444444322 33456667777 788888888888777543322 33566778888888888888777
Q ss_pred HHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 498 YKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 498 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
+..... ..-.+..-...|+++...|+.++|+..|+++++.++++
T Consensus 149 L~t~~~--------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDTIKE--------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred Hhcccc--------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 765443 12233345557888888888888888888888775433
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0037 Score=56.57 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEEL 295 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 295 (557)
.+.-....|++.+|...|..++...|++..+...++.++...|+.+.|..++..+
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 4667788999999999999999999999999999999999999999998877654
No 267
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.56 E-value=0.089 Score=50.86 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=97.9
Q ss_pred chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705 155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~ 234 (557)
.+++..+.+.+...+...|.+|..-.+.+.+....|.|+.|...+..+-..-.....+...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~------------------- 362 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRC------------------- 362 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHH-------------------
Confidence 4567777888888888899999999999999999999999988876554432222222222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCc
Q 008705 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDD 305 (557)
Q Consensus 235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 305 (557)
+-.....+|++++|.....-++...-+++++....|......|-++++...+++++.++|.....
T Consensus 363 ------~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 363 ------RLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred ------HHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 24556778999999999999988777788887777777788899999999999999998865443
No 268
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.55 E-value=0.078 Score=55.41 Aligned_cols=272 Identities=14% Similarity=0.017 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH---HHHhccchhHHHHHHHHHH-hhCCCChhHHHHH
Q 008705 268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN---VLYAKECFSALSYLAHRVF-MTDKYRPESCCII 343 (557)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 343 (557)
-...+...+..+...|...+|+..--.+ .+|.. +...+-+ -+...++..-+..+.+.+- ..--..|......
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~--aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~ 421 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEM--AADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ 421 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHH--HHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence 3566777777788888888887664433 12211 0111111 1222222222222222110 1112367777888
Q ss_pred HHHHhhhCchHHHHHHHHHHHhcCcC---------CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-----hHHHH
Q 008705 344 GNYYSLKGQHEKSVVYFRRALKLDKN---------YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-----YRAWY 409 (557)
Q Consensus 344 a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~ 409 (557)
+.......++.+|..+..++...-+. .....-..|.+....|++++|++..+.++..-|.+ ..+..
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 88888999999999888887654333 12334567788889999999999999999987765 45577
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCC----CHH--HHHHHHHHHhHHhcCc--HHHHHHHHHHHHh----cCCChHHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPN----DSR--LWIAMAQCYETEQLHM--LEEAIKCYRRAAN----CNDSEAIA 477 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~--~~~~l~~~~~~~~~~~--~~~A~~~~~~al~----~~p~~~~~ 477 (557)
.+|.+....|++++|..+.+++.+.... .-. +....+.++.. +|+ +.+....|...-. ..|.....
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~--qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA--QGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 8899999999999999999998876322 222 33445667777 883 3333444433322 23443333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVE-ALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
....+.++...-+++.+..-..+.++...... ..|.... +++.|+.++...|++++|......+..+-
T Consensus 580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 33333333333336666666666655322211 1233333 33489999999999999999998887653
No 269
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.27 Score=57.02 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHh---cC----CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705 421 PLYALHYFRKSVF---LQ----PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 421 ~~~A~~~~~~a~~---~~----p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 493 (557)
..+-+-.+++++- .+ ..-.++|...|.+... .|+++.|...+-+|.+.. -+.+....|..++..|+...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~--aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL--AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh--cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHH
Confidence 4555555555542 23 2346799999999999 999999999999998776 57889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCC----cc------hHHHHHHHHHHHHHcCCHH--HHHHHHHHHhccCCC
Q 008705 494 AAFYYKKDLERMEAEEREG----PN------MVEALIFLATHCRAHGRFE--EAEVYCTRLLDYTGP 548 (557)
Q Consensus 494 A~~~~~~al~~~~~~~~~~----~~------~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~ 548 (557)
|+..+++.++......... |. ...+.+.++......|+++ +-+.+|+.+.++.|.
T Consensus 1721 Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 9999999997543221111 11 1335566677777777753 567888999888764
No 270
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.53 E-value=0.16 Score=53.14 Aligned_cols=248 Identities=15% Similarity=0.020 Sum_probs=152.1
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHH
Q 008705 268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYY 347 (557)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 347 (557)
+|......|.......++.+|..+..++...-+....... .....+.....|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~-------------------------~~l~ae~~aL~a~va 468 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ-------------------------GDLLAEFQALRAQVA 468 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch-------------------------hhHHHHHHHHHHHHH
Confidence 5667778888888999999999998888765443111000 000123334467777
Q ss_pred hhhCchHHHHHHHHHHHhcCcCC-----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC----CChHHH--HHHHHHHH
Q 008705 348 SLKGQHEKSVVYFRRALKLDKNY-----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP----RDYRAW--YGLGQAYE 416 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~--~~l~~~~~ 416 (557)
...|++++|+.+.+.++..-|.. ..+...+|.+..-.|++++|..+.+.+.+... .....| ...+.++.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 78899999999999998877654 34566788888899999999999888887632 223333 34466777
Q ss_pred HhCC--hHHHHHHHHHHHh----cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCCh--HH-HHHHHHH
Q 008705 417 MMHM--PLYALHYFRKSVF----LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDSE--AI-ALNQLAK 483 (557)
Q Consensus 417 ~~~~--~~~A~~~~~~a~~----~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~~--~~-~~~~la~ 483 (557)
.+|+ +.+....|...-. ..|-........+.++.. .-+++.+..-..+.++. .|.. .. ++..|+.
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~--~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRA--WLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH--HHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 7883 3333333333222 223332333333333333 23355555555555544 2222 22 3458999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNM-VEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
++...|+.++|...+......+.... ..+.. ..++.-...+...+||..+|..+..+..
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 99999999999999999887544322 11111 2222223344557899999988887743
No 271
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.48 E-value=0.2 Score=52.93 Aligned_cols=106 Identities=10% Similarity=0.122 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHH-hcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 175 DPFGLYLYGIVLK-DKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 175 ~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
++.+.+.+|.++. ...++++|...+.+++.+...+. +..+ .+...+.++.++.+.+...
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~--~~d~-----------------k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHR--LTDL-----------------KFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hHHH-----------------HHHHHHHHHHHHHhcCHHH-
Confidence 4568899999987 78999999999999987764411 1111 1223455688888888777
Q ss_pred HHHHHHHHHhcCCC---CHHHH-HHH--HHHHHhcccHHHHHHHHHHHHHhCC
Q 008705 254 SLTKYEYLQGTFSF---SNYIQ-AQI--AKAQYSLREFEQVEVIFEELLRNDP 300 (557)
Q Consensus 254 A~~~~~~~l~~~p~---~~~~~-~~l--a~~~~~~g~~~~A~~~~~~~l~~~p 300 (557)
|...+++.++.... ....+ +.+ ...+...+++..|++.++.+.....
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 99999998875433 22222 222 2333334799999999999988653
No 272
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.47 E-value=0.00016 Score=66.17 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=80.0
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA 424 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 424 (557)
.-....|.++.|+..|..+++++|.....+...+.+++++++...|++.+..+++++|+....+-..|.+...+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 33455788999999999999999998888999999999999999999999999999998888888888888999999999
Q ss_pred HHHHHHHHhcCC
Q 008705 425 LHYFRKSVFLQP 436 (557)
Q Consensus 425 ~~~~~~a~~~~p 436 (557)
...+..+.+++-
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 999999888763
No 273
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.46 E-value=0.0038 Score=52.22 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=70.1
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH-HHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA-AIDAYRRAVDINPRDYRAWYGLGQAYEMM 418 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 418 (557)
.+..|......++.+.++..+++++.+.....-.-.. ...+-. ....++.. ...+...++..+...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 3444666677889999999999999886443110000 011111 11222221 234555677777778
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 419 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
|++++|+..+++++..+|.+..++..+..++.. .|+..+|++.|++...
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~--~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAA--QGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888887 8888888887777643
No 274
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.029 Score=55.09 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=75.7
Q ss_pred chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705 155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~ 234 (557)
+.+.....+.+....+..|+++...+..+..+...|+.+.|+..+..++. .-|..+-
T Consensus 246 ~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~------~~~kQ~~----------------- 302 (546)
T KOG3783|consen 246 NPDGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP------IRMKQVK----------------- 302 (546)
T ss_pred CccHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc------HHHHHHH-----------------
Confidence 34447777778888888899999999999999999998889999998887 2233331
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIA 276 (557)
Q Consensus 235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 276 (557)
.+..|-+|.++.-..+|..|-..+..+.+...-+.-.+..++
T Consensus 303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 303 SLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence 123355788889999999999999999887766665665555
No 275
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.42 E-value=0.12 Score=49.14 Aligned_cols=159 Identities=23% Similarity=0.300 Sum_probs=113.8
Q ss_pred hHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCCCC-hHHH
Q 008705 338 ESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINPRD-YRAW 408 (557)
Q Consensus 338 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~ 408 (557)
.....++..|.. ..+..+|..+|+.+. ....+.+.+.+|..|.. ..+..+|...|+++.+..-.. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 444555555543 345778888888544 45667788888888876 448889999999988875433 3447
Q ss_pred HHHHHHHHHhC-------ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHhcCCChHHHHH
Q 008705 409 YGLGQAYEMMH-------MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCNDSEAIALN 479 (557)
Q Consensus 409 ~~l~~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~ 479 (557)
+.+|.+|..-. +...|+..|.++.... ++.+...+|.+|..+ ...++.+|..+|.++.+... ....+
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~ 227 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACY 227 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHH
Confidence 77888776642 2336888888888765 778888999888762 12378999999999998876 77888
Q ss_pred HHHHHHHHcC---------------CHHHHHHHHHHHHH
Q 008705 480 QLAKLHHALG---------------RDEEAAFYYKKDLE 503 (557)
Q Consensus 480 ~la~~~~~~g---------------~~~~A~~~~~~al~ 503 (557)
.++ ++...| +...|..++.++..
T Consensus 228 ~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 228 NLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred HHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 888 666666 66666666666655
No 276
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0076 Score=55.20 Aligned_cols=105 Identities=14% Similarity=-0.087 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
+.-+-.-|.-|++.++|..|+.+|.+.|...-.+.+.-. ..+.+.|.+....|+|..|+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlna---------------------vLY~NRAAa~~~l~NyRs~l 139 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNA---------------------VLYTNRAAAQLYLGNYRSAL 139 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHH---------------------HHHhhHHHHHHHHHHHHHHH
Confidence 455666799999999999999999999987665554322 22455799999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705 256 TKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY 301 (557)
Q Consensus 256 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 301 (557)
.-+.+++..+|.+..+++.-|.|++.+..+.+|..+++..+.++..
T Consensus 140 ~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 140 NDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999999999999999999999877654
No 277
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00088 Score=61.07 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
++.+-.-|+-|+...+|..|+..|.+.++..-.+ ...|.+.+.+....|+|..|+....+++.++|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4456668999999999999999999999875333 455888999999999999999999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHhcC
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQ 435 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~ 435 (557)
.++..+.++.+|..+++..+.++
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999888876654
No 278
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.35 E-value=0.00022 Score=65.25 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=86.4
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcH
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 457 (557)
+...+..|.+++|++.|..++.++|.....+...+.++.+++++..|+.-|..++.++|+...-+-..|.+... +|++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl--lg~~ 198 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL--LGNW 198 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH--hhch
Confidence 44456778899999999999999999999999999999999999999999999999999999988888999988 9999
Q ss_pred HHHHHHHHHHHhcCCC
Q 008705 458 EEAIKCYRRAANCNDS 473 (557)
Q Consensus 458 ~~A~~~~~~al~~~p~ 473 (557)
++|...+..+.+++-+
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999988643
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.27 E-value=0.031 Score=57.88 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHhc-----CcCCHHHHHHHhHHHHhcC-----CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-
Q 008705 351 GQHEKSVVYFRRALKL-----DKNYLSAWTLMGHEYVEMK-----NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH- 419 (557)
Q Consensus 351 g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~- 419 (557)
.+.+.|+.+|+.+... ....+.+.+.+|.+|.... +...|+.+|.++-... ++.+.+.+|.++..-.
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK 340 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence 3455555555554430 0112333444444444422 3344444444444433 2334444444444333
Q ss_pred --ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHhcC
Q 008705 420 --MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 420 --~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~~~ 471 (557)
+...|..+|..|... .+..+.+.++.||..+ -..+...|..+++++.+.+
T Consensus 341 ~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 234444444444432 2344444444444431 1123444445555444443
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.20 E-value=0.02 Score=55.50 Aligned_cols=168 Identities=15% Similarity=0.053 Sum_probs=101.7
Q ss_pred HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705 330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409 (557)
Q Consensus 330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (557)
+...|...+++..++.++...|+++.|.+++++|+-.........+..-..-...|+ +.--|+. ..|..-..+.+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~~~~--~eNR~fflal~ 107 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLDYRR--PENRQFFLALF 107 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccCCcc--ccchHHHHHHH
Confidence 466888889999999999999999999999888874321111111100000000010 0000000 00111244556
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHH-HHHhHHhcCcHHHHHHHHHHHHhcCC-----ChHHHHHHHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMA-QCYETEQLHMLEEAIKCYRRAANCND-----SEAIALNQLA 482 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~-~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la 482 (557)
.......+.|-+..|+++++-.+.++|. ||-...... ....+ .++++--+..++....... .-|...+..+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr--s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR--SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA 185 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh--cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence 6677778888888888888888888888 665443333 33345 6777777777766544211 1235667777
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHHH
Q 008705 483 KLHHALGRD---------------EEAAFYYKKDLER 504 (557)
Q Consensus 483 ~~~~~~g~~---------------~~A~~~~~~al~~ 504 (557)
.++...++. ++|...+.+|+..
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 777777777 7888888888764
No 281
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.17 E-value=0.033 Score=42.85 Aligned_cols=105 Identities=19% Similarity=0.126 Sum_probs=76.0
Q ss_pred HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (557)
+|..|+..-.+..-|-|++|...+.++...... +..++..|+..+..+|+|++++..-++++..+...
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 344444443332268889999888888875321 24477789999999999999999999999988888
Q ss_pred hcCCcchHHHH----HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 509 EREGPNMVEAL----IFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 509 ~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
+....+....| +..|..+...|+.++|+..|+.+-+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 87777765555 45788899999999999999998664
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.14 E-value=0.00066 Score=40.27 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWN 209 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (557)
.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999998853
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.032 Score=47.33 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcccHHHHHHHHHH
Q 008705 240 FLASAYQELRMHKESLTKYEYLQGTFSFS---NYIQAQIAKAQYSLREFEQVEVIFEE 294 (557)
Q Consensus 240 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 294 (557)
.++..+.+.|++++|+..++.++....+. .-+-..+|++....|.+++|+..+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 34555555555555555555554332221 12234455555555555555554443
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.08 E-value=0.0009 Score=39.68 Aligned_cols=29 Identities=41% Similarity=0.693 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444444444444444444444333
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.08 E-value=0.041 Score=52.73 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH-HhcCcHHHHHHHHHHH
Q 008705 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET-EQLHMLEEAIKCYRRA 467 (557)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~~~~~~~~A~~~~~~a 467 (557)
.-+..|++|++.+|++...+..+-.+..+..+.++...-+++++..+|+++.+|..+-..... ...-.+++....|.++
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 344555566666665555555555555555555555555666666666555555444333221 0012344444444444
Q ss_pred HhcC------C------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 468 ANCN------D------------SEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 468 l~~~------p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
+..- . .-..++..+.....+.|..+.|+..++..++
T Consensus 129 l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 129 LRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 4320 0 0022445555566666777777777766666
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.46 Score=48.37 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=106.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 008705 182 YGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYL 261 (557)
Q Consensus 182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 261 (557)
.+.+-.--|.+++|.+.|-.+-+.+- -...+...|++-...++++..
T Consensus 740 ~aei~~~~g~feeaek~yld~drrDL---------------------------------Aielr~klgDwfrV~qL~r~g 786 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRRDL---------------------------------AIELRKKLGDWFRVYQLIRNG 786 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchhhh---------------------------------hHHHHHhhhhHHHHHHHHHcc
Confidence 34444556889999998876644321 134566777777777666654
Q ss_pred HhcCC--CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhH
Q 008705 262 QGTFS--FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPES 339 (557)
Q Consensus 262 l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (557)
-.-.. .-..++..+|..+..+..|++|.++|.+.-. ...+..+++..+.++++..++.. -|.+.+.
T Consensus 787 ~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~~----Lpe~s~l 854 (1189)
T KOG2041|consen 787 GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLART----LPEDSEL 854 (1189)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHHh----cCcccch
Confidence 22211 1345788889999999999999999887532 34567788888888888777665 4556666
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
+-.+|..+...|.-++|++.|-+.- .|.- -.+....++++.+|++.-++
T Consensus 855 lp~~a~mf~svGMC~qAV~a~Lr~s--~pka------Av~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 855 LPVMADMFTSVGMCDQAVEAYLRRS--LPKA------AVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHhhchHHHHHHHHHhcc--CcHH------HHHHHHHHHHHHHHHHHHHh
Confidence 6778888888888888888776531 1221 11334455566666655443
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.03 E-value=0.29 Score=45.85 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHhcCChHHHHHHHHHHhccC-CCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHh
Q 008705 186 LKDKGNENLARTVFVESVNSY-PWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR-MHKESLTKYEYLQG 263 (557)
Q Consensus 186 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~ 263 (557)
..++|+++.|..++.++-... ..++.....|+.. .|..|......+ ++++|...++++.+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~------------------~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARV------------------CYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHH------------------HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 457899999999999987655 4444444455433 345688888888 99999999999877
Q ss_pred cC----C---CC-------HHHHHHHHHHHHhcccHH---HHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705 264 TF----S---FS-------NYIQAQIAKAQYSLREFE---QVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326 (557)
Q Consensus 264 ~~----p---~~-------~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (557)
.- + .. ..++..++.++...+.++ +|....+.+-...|+.+........++....+.+.+...+
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHH
Confidence 62 1 11 234667788888776654 4555555555556665555444444444444445554444
Q ss_pred HHHHhh
Q 008705 327 HRVFMT 332 (557)
Q Consensus 327 ~~~~~~ 332 (557)
.+++..
T Consensus 145 ~~mi~~ 150 (278)
T PF08631_consen 145 MRMIRS 150 (278)
T ss_pred HHHHHh
Confidence 444443
No 288
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.056 Score=53.19 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCc
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR-FEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 549 (557)
-+..+|.++..+|+...|..+|..+++.........--.|.+++.+|..+..+|. ..++..++.+|-+...+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 5677899999999999999999999975444333444568899999999999999 999999999998876443
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.88 E-value=0.0015 Score=38.31 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWN 209 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (557)
++++.+|.++.+.|++++|+..|+++++.+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 368999999999999999999999999999974
No 290
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.76 E-value=0.97 Score=47.66 Aligned_cols=124 Identities=15% Similarity=0.012 Sum_probs=70.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
++.......+.+.|...+.+......-+. .++..+|.-... .+...+|...+..+.... .+.........+..
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~--~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al 323 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMG--NDVTDEQAKWRDDVIMRS-QSTSLLERRVRMAL 323 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHhccccc-CCcHHHHHHHHHHH
Confidence 33334455666777777776544333222 233444443333 322566677666654332 22233333344445
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
..++++.+...+...-. .........+++|+.+...|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~-------~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPM-------EAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCH-------hhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777776666665433 2234667788888887778888888888887744
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=0.93 Score=46.30 Aligned_cols=196 Identities=15% Similarity=0.054 Sum_probs=116.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC--CCChhHHHHHHHHHhhhC
Q 008705 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD--KYRPESCCIIGNYYSLKG 351 (557)
Q Consensus 274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g 351 (557)
+.|.+-.--|+|++|.+.|-.+-+. +....+....+++-....+++.....+ ...-.++..+|..+....
T Consensus 739 q~aei~~~~g~feeaek~yld~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~ 810 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMM 810 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3455555568888888887554221 222333444555555555544422221 123457888999999999
Q ss_pred chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431 (557)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 431 (557)
.+++|.++|.+.-.. -+...+++...+|++-.. ....-|++...+-.+|..+...|+-++|.+.|-+.
T Consensus 811 ~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 999999999875322 244566666666665433 33445778888888999999999999999888653
Q ss_pred HhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 501 (557)
Q Consensus 432 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (557)
- .|. + .+ ..... ++++.+|++..++-. -|.-.......+.-+...++.-+|++..+++
T Consensus 879 s--~pk---a--Av-~tCv~--LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 879 S--LPK---A--AV-HTCVE--LNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred c--CcH---H--HH-HHHHH--HHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 2 121 1 11 22334 677888877766531 1332333333344444555666666655554
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.66 E-value=0.072 Score=51.65 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=33.6
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 167 TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
.+++..|-....+..++.++.++|++..|-+..++|+-
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999999874
No 293
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.65 E-value=0.024 Score=50.36 Aligned_cols=95 Identities=28% Similarity=0.398 Sum_probs=67.6
Q ss_pred cCcHHHHHHHHHHHHhc----CC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc------CCcchHHHHH
Q 008705 454 LHMLEEAIKCYRRAANC----ND---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER------EGPNMVEALI 520 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~ 520 (557)
...+++|+..|.-|+-. .. .-+..+..+|++|...|+.+....++++|++.+...-. ..-+...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 44566677766665532 11 12557888999999999977777777777765443211 1224467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 521 FLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 521 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
.+|.+..+.|++++|..+|.+++.....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999986433
No 294
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.60 E-value=0.0053 Score=35.92 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPY 301 (557)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 301 (557)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666664
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.48 E-value=0.0043 Score=37.24 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 518 ALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 518 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
++..||.+|.+.|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999977553
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.48 E-value=0.0045 Score=37.15 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=8.3
Q ss_pred HHHHHHHHhCChHHHHHHHHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRK 430 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~ 430 (557)
.||.+|..+|++++|+.+|++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444
No 297
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.48 E-value=1.8 Score=47.32 Aligned_cols=332 Identities=10% Similarity=-0.061 Sum_probs=176.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH-------hhh
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL-------RMH 251 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~-------~~~ 251 (557)
+.....++...+.|+.|+..|+++....|...+.+...- -.|.....+ ..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 535 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQF----------------------RLGITLLEKASEQGDPRDF 535 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHH----------------------HhhHHHHHHHHhcCChHHH
Confidence 334556778889999999999999999998877665552 223333222 357
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc-----chhHHHHHH
Q 008705 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE-----CFSALSYLA 326 (557)
Q Consensus 252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 326 (557)
++|+..|+++- ..|.-|--+...|.+|..+|++++-+++|.-+++..|.++..-...-.+.+... ....+....
T Consensus 536 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (932)
T PRK13184 536 TQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFM 614 (932)
T ss_pred HHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888763 356667778889999999999999999999999999998876544333322211 001111111
Q ss_pred HHHHhhCCCChh-----------------------------HHHH-HH-HHHhhhCchHHHHHHHHHHHhcCcCCHHHHH
Q 008705 327 HRVFMTDKYRPE-----------------------------SCCI-IG-NYYSLKGQHEKSVVYFRRALKLDKNYLSAWT 375 (557)
Q Consensus 327 ~~~~~~~~~~~~-----------------------------~~~~-la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 375 (557)
--++..-|.... .... +. .+-+-.|..---...|+++....+- .+..
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 692 (932)
T PRK13184 615 LLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY--RALA 692 (932)
T ss_pred HHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH--HHHH
Confidence 111111111100 0000 00 0011123333334556666655433 5555
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhh-----CCCCh--------HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH-
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDI-----NPRDY--------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL- 441 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~- 441 (557)
..-.+...+|+++-+.......-+. .|.+. ..|..-..+......++++.+.+. .+.|.....
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 769 (932)
T PRK13184 693 DIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDPTLILYA 769 (932)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCHHHHHHH
Confidence 5666667888877665544433211 11111 112111223333345555554332 223322211
Q ss_pred HHHHH-HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705 442 WIAMA-QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520 (557)
Q Consensus 442 ~~~l~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (557)
+...+ .++...+..-.-.+++.+++...-............++|....++++|-+.+...-.. ....+...++.
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 844 (932)
T PRK13184 770 FDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLD-----LLLDEYSEAFV 844 (932)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChh-----hhccccchHHH
Confidence 11111 1111100112222333333222111111234445566777788889888887543221 12345667888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Q 008705 521 FLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 521 ~la~~~~~~g~~~~A~~~~~~al 543 (557)
..|-.+.-.++-+.|...|..+.
T Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 845 LYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHHhcCchhHHHHHHhhcc
Confidence 88888889999999999998887
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.47 E-value=0.26 Score=44.11 Aligned_cols=189 Identities=14% Similarity=0.112 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHH
Q 008705 283 REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362 (557)
Q Consensus 283 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 362 (557)
.+.++|+..|++++++.+...+.- -.++-.+..+++..+++++-...|.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWG------------------------------FKALKQmiKI~f~l~~~~eMm~~Y~q 90 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWG------------------------------FKALKQMIKINFRLGNYKEMMERYKQ 90 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhH------------------------------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 478899999999999987643311 01222234444555555555555544
Q ss_pred HHhcC-----cCCHH-HHHHHhHHHHhcCCchHHHHHHHHHHhh--CCCChHHH----HHHHHHHHHhCChHHHHHHHHH
Q 008705 363 ALKLD-----KNYLS-AWTLMGHEYVEMKNTPAAIDAYRRAVDI--NPRDYRAW----YGLGQAYEMMHMPLYALHYFRK 430 (557)
Q Consensus 363 al~~~-----p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~ 430 (557)
.+..- .++.+ ....+-..-....+.+--.++|+..++. +..+.+.| ..||.+|+..+.|..-.+.+++
T Consensus 91 lLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 91 LLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 44321 11111 1111111111223333333333333321 22233333 3567777777766665555555
Q ss_pred HHhcCCC-----C-------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--hHHHH----HHHHHHHHHcCCHH
Q 008705 431 SVFLQPN-----D-------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIAL----NQLAKLHHALGRDE 492 (557)
Q Consensus 431 a~~~~p~-----~-------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~----~~la~~~~~~g~~~ 492 (557)
.-..... + .+++..-...|.. +++-.+-...|++++.+... +|.++ -.=|..+.+.|+++
T Consensus 171 Lh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~--qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe 248 (440)
T KOG1464|consen 171 LHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTE--QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFE 248 (440)
T ss_pred HHHHhccccCchhhhccchhhhhHhhHhhhhhh--hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHH
Confidence 4332211 0 1233333445555 55555666667776655322 22222 22244566667777
Q ss_pred HHHHHHHHHHH
Q 008705 493 EAAFYYKKDLE 503 (557)
Q Consensus 493 ~A~~~~~~al~ 503 (557)
+|-.-|=++.+
T Consensus 249 ~AhTDFFEAFK 259 (440)
T KOG1464|consen 249 KAHTDFFEAFK 259 (440)
T ss_pred HHHhHHHHHHh
Confidence 77666666655
No 299
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.42 E-value=1.2 Score=45.24 Aligned_cols=112 Identities=20% Similarity=0.149 Sum_probs=71.0
Q ss_pred HHHHHhhhCchHHHHHHH----------HHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 343 IGNYYSLKGQHEKSVVYF----------RRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~----------~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
.|..+...|+.++|+... +-+-+++....+.....+..+.....+.-|-+.|.+.=+. ..+.
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiV 780 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLV 780 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHh
Confidence 345556667777666542 2233344455556666666677777777777777664221 2355
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
+++...+++.+|....++--+.- +.+++-.|..+.. ..++++|.+.|.+|
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE--~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAE--NDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhh--hhhHHHHHHHHHHh
Confidence 66777888888877665543332 3467777888877 88888888777766
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.37 E-value=0.07 Score=40.92 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=70.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-----------h
Q 008705 182 YGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR-----------M 250 (557)
Q Consensus 182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~-----------~ 250 (557)
++..++..||+-+|+++.+..+...+.+..+|.-. ...|.++..+. -
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh----------------------~~QG~if~~lA~~ten~d~k~~y 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLH----------------------RLQGTIFYKLAKKTENPDVKFRY 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHH----------------------HHHhHHHHHHHHhccCchHHHHH
Confidence 46778999999999999999999998887666322 22344443332 1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008705 251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN 298 (557)
Q Consensus 251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 298 (557)
.-.+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 60 Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 345788899999999988888888888777777778888777777754
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.28 E-value=0.023 Score=37.30 Aligned_cols=39 Identities=26% Similarity=0.063 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHH
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSE 215 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 215 (557)
+.+|.+|..+++.|+|++|..+.+.+++..|.|..+..-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 468999999999999999999999999999999876543
No 302
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.27 E-value=0.017 Score=52.32 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
-...+.-....|+.++|...|+.|+.+.|++++++...|+.....++.-+|-.+|-+++.+.|.+..++.+.+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344555566788889999999999999999999999999988888888889999999999999888888776654
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.21 E-value=0.097 Score=43.34 Aligned_cols=85 Identities=15% Similarity=-0.024 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
..+..+..+-...++.+++...+.-.--+.|..+..-..-|.++.. .|++.+|+..|+.+....|..+.+--.++.|+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~--r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV--RGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH--hCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3455666667788899999999998888999999999999999999 99999999999999888899898888999999
Q ss_pred HHcCCHH
Q 008705 486 HALGRDE 492 (557)
Q Consensus 486 ~~~g~~~ 492 (557)
..+|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 9988865
No 304
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.17 E-value=0.39 Score=37.19 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=53.6
Q ss_pred HhCChHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh-------cCCChH--
Q 008705 417 MMHMPLYALHYFRKSVFLQPN------------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-------CNDSEA-- 475 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~-- 475 (557)
.-|.|++|...+++++....+ |.-++..|+.++.. +|+|++++..-.+++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~--Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG--LGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 345556666666655544311 12345556666666 6666666555555543 333332
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc
Q 008705 476 --IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 513 (557)
Q Consensus 476 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 513 (557)
.+.++.|..+...|+.++|+..|+.+.+.+....+.-|
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~~ 138 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEMP 138 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--T
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCc
Confidence 35567788888899999999999998886654443333
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.15 E-value=0.12 Score=42.82 Aligned_cols=86 Identities=12% Similarity=-0.120 Sum_probs=77.5
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
...+..+..+-...++.+++...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34566677778889999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHH
Q 008705 451 TEQLHMLE 458 (557)
Q Consensus 451 ~~~~~~~~ 458 (557)
. +|+.+
T Consensus 90 ~--~~D~~ 95 (160)
T PF09613_consen 90 A--LGDPS 95 (160)
T ss_pred H--cCChH
Confidence 8 88754
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.11 E-value=0.26 Score=44.11 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-----CC-CCcHHHHHHHHHhccc
Q 008705 249 RMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDP-----YR-VDDMDMYSNVLYAKEC 318 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~-~~~~~~~~~~~~~~~~ 318 (557)
...++|+..|++++++.+... .++-++..+.+.+++|++-...|.+++..-. +. .......-........
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 478899999999999987643 4667888899999999999999988875321 11 1111111111112222
Q ss_pred hhHHHHHHHHHHhh--CCCChhHH----HHHHHHHhhhCchHHHHHHHHHHHhcCcC------------CHHHHHHHhHH
Q 008705 319 FSALSYLAHRVFMT--DKYRPESC----CIIGNYYSLKGQHEKSVVYFRRALKLDKN------------YLSAWTLMGHE 380 (557)
Q Consensus 319 ~~~~~~~~~~~~~~--~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~ 380 (557)
.+-+..+++..+.. +..+...| ..+|.+|+..|+|.+-.+.+++.-..... -.+++..-...
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 33333333322221 11222333 45788888888877766666554432111 12345555566
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCC--hHH----HHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRD--YRA----WYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~--~~~----~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
|...++-.+-...|++++.+...- +.+ .-.-|..+.+.|+|++|-..|-.|++...
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 777777777777788877764332 222 12234556677778888777777776543
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.09 E-value=0.12 Score=44.60 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 515 (557)
Q Consensus 439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (557)
..++..+|..|.+ .|+.++|+++|.++....... ...+..+..+....|++.....+..++-...... +.....
T Consensus 36 r~~~~~l~~~~~~--~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCK--IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERR 112 (177)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHH
Confidence 3467788888888 888888888888877654332 4467778888888888888888888887754331 111122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 516 VEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
......-|..+...++|.+|...|-.+..-.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2344456677778889999888887775543
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.99 E-value=0.096 Score=39.18 Aligned_cols=42 Identities=26% Similarity=0.169 Sum_probs=16.2
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 008705 394 YRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435 (557)
Q Consensus 394 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 435 (557)
+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333444444444444444444444444444444444444433
No 309
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.99 E-value=3.2 Score=45.47 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=73.3
Q ss_pred HHHHhhhhhhHHHHHHHHhhhcCCchh-hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCC
Q 008705 96 LAKSYFDCREYRRAAHVLRDQTGRRSV-FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTV 174 (557)
Q Consensus 96 la~~~~~~~~y~~A~~~l~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 174 (557)
.-.++...+.|++|+..++++...-|. --..-+.+.+|-. -.+++.+. .....+.++..+++.+. ..|.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~ 550 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGIT-LLEKASEQ--------GDPRDFTQALSEFSYLH-GGVG 550 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHH-HHHHHHhc--------CChHHHHHHHHHHHHhc-CCCC
Confidence 356788899999999999988642211 1111122333310 11111111 11156777888877755 4688
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNA 212 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 212 (557)
.|.-+.-.|.+|.+.|+++|-+++|.-+++..|.++..
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 551 APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88999999999999999999999999999999998864
No 310
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.97 E-value=0.029 Score=50.88 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=80.8
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM-- 418 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 418 (557)
...+.-....|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+...-..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~ 199 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSA 199 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHH
Confidence 344555677899999999999999999999999999999999999999999999999999999999988876543221
Q ss_pred --CChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhH
Q 008705 419 --HMPLYALHYFRKSVFLQP-NDSRLWIAMAQCYET 451 (557)
Q Consensus 419 --~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~ 451 (557)
.++-..+..-.+.+..-+ .+......+-..|+.
T Consensus 200 iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~ 235 (472)
T KOG3824|consen 200 IDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL 235 (472)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 122223333333333223 334444555556654
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.97 E-value=0.021 Score=37.55 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcH
Q 008705 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM 306 (557)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 306 (557)
.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456677777777777777777777777777765443
No 312
>PRK10941 hypothetical protein; Provisional
Probab=95.93 E-value=0.094 Score=48.27 Aligned_cols=70 Identities=14% Similarity=0.013 Sum_probs=45.8
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
++-.+|...++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+-...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666666666554433
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.91 E-value=1.9 Score=42.03 Aligned_cols=120 Identities=13% Similarity=-0.005 Sum_probs=78.9
Q ss_pred HHhHHHHhcCC-chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH--HHHHHH---------hcCCC---CHH
Q 008705 376 LMGHEYVEMKN-TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH--YFRKSV---------FLQPN---DSR 440 (557)
Q Consensus 376 ~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~~~~a~---------~~~p~---~~~ 440 (557)
.-|.-+.+.|. -++|+..++.+++..+.+...-...-. +-...|.+|+. .+.+.+ .+.|- +.+
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 34556667776 889999999999999888644322111 11111222211 111111 12222 233
Q ss_pred HHHHHHH--HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 441 LWIAMAQ--CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 441 ~~~~l~~--~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (557)
.-+.++. .++. .|+|.++.-+-.=..++.| .+.++..+|.++....+|++|..++..
T Consensus 462 ian~LaDAEyLys--qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYS--QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4444444 3455 8999999988888888899 799999999999999999999999876
No 314
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.90 E-value=0.13 Score=38.44 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGRDEEAAFYY 498 (557)
Q Consensus 424 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~ 498 (557)
.+..+++.+..+|++..+.+.+|..+.. .|++++|++.+-.++..++.. ..+...+-.++...|.-+.-..-|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~--~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA--AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 4667888999999999999999999999 999999999999999988765 445556666666666544333333
No 315
>PRK10941 hypothetical protein; Provisional
Probab=95.88 E-value=0.092 Score=48.34 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHH
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRL 441 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 441 (557)
++-.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|..-++..++..|+++.+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 344445555555555555555555555555555555555555555555555555555555555444
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.85 E-value=0.048 Score=52.60 Aligned_cols=120 Identities=13% Similarity=-0.018 Sum_probs=82.3
Q ss_pred HhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHH
Q 008705 382 VEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 461 (557)
Q Consensus 382 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~ 461 (557)
...|+.-.|-.-...++...|.++......+.+...+|.|+.|...+..+-..-.........+-..... +|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~--l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG--LARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc--hhhHHHHH
Confidence 3567777777777778887777777777777788888888887777665544433333344444445555 77777777
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 462 KCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 462 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
..-+-.+...-.++++..-.|-....+|-++++..++++.+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 777777666666666666666666677777777777777776
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.82 E-value=0.016 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCC
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPW 208 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 208 (557)
..++.+|.++...|++++|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999998885
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.64 E-value=0.024 Score=32.46 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=10.4
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~ 434 (557)
..+|.++...++++.|+..++++++.
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33344444444444444444444333
No 319
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.58 E-value=0.019 Score=49.75 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=58.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 008705 483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTH 553 (557)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a 553 (557)
....+.++.+.|.+.|.+++. ..|+....|+.+|....+.|+++.|...|++.++++|++..-+
T Consensus 3 ~~~~~~~D~~aaaely~qal~-------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE-------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA 66 (287)
T ss_pred chhcccCChHHHHHHHHHHhh-------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccch
Confidence 445677899999999999999 7899999999999999999999999999999999999886543
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=1.3 Score=37.13 Aligned_cols=147 Identities=11% Similarity=0.078 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705 178 GLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK 257 (557)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~ 257 (557)
--|+-+.-+.+.++.++|+..|...-+..-.+...+-. +-.+.+..+.|+...|+..
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~-----------------------mr~at~~a~kgdta~AV~a 116 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLAR-----------------------MRAATLLAQKGDTAAAVAA 116 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHH-----------------------HHHHHHHhhcccHHHHHHH
Confidence 34556666677777788888777766554444332222 2347777778888888888
Q ss_pred HHHHHhcCCC--C--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705 258 YEYLQGTFSF--S--NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333 (557)
Q Consensus 258 ~~~~l~~~p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (557)
|..+-...|- - -.+...-+.++...|-|++.....+.+-. ..+
T Consensus 117 Fdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---------------------------------d~n 163 (221)
T COG4649 117 FDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---------------------------------DGN 163 (221)
T ss_pred HHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccC---------------------------------CCC
Confidence 8877554332 1 12345556666777777766554443211 122
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEY 381 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 381 (557)
|.+..+.-.+|..-++.|++.+|...|..... +...+......+.+.
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 33444455577777788888888888877665 444444444444443
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.43 E-value=0.4 Score=36.87 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=66.7
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHH---HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLW---IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
+.-++..|++-+|++..+..+...+++...| ..-|.++. +.+...+..+....+.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~--------------~lA~~ten~d~k~~yLl------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFY--------------KLAKKTENPDVKFRYLL------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHH--------------HHHHhccCchHHHHHHH-------
Confidence 4556666777777777777766666555333 22222222 22222222222222222
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
.++++|.++.. ..|..+..++.+|.-+....-|+++..-.++++.+..|
T Consensus 62 ----~sve~~s~a~~-------Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 62 ----GSVECFSRAVE-------LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred ----HhHHHHHHHhc-------cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 35667777776 78888999999999888888899999999999988654
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.25 E-value=0.5 Score=40.68 Aligned_cols=122 Identities=13% Similarity=-0.016 Sum_probs=82.1
Q ss_pred hhHHHHHHHHhhhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCCh
Q 008705 156 RELISLERELSTSWKNG--TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNN 233 (557)
Q Consensus 156 ~~l~~~~~~l~~~~~~~--~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~ 233 (557)
..+..+..+++....+. ..--.++..+|..|.+.|+.++|++.|.++............
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id------------------- 74 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID------------------- 74 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-------------------
Confidence 34455555565543221 122357889999999999999999999998775543322211
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC--CCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 008705 234 HWMKDYFLASAYQELRMHKESLTKYEYLQGTF--SFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRND 299 (557)
Q Consensus 234 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 299 (557)
..+.+..+.+..+++..+...+.++-... +.+. .+....|..+...++|..|-..|-.+....
T Consensus 75 ---~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 75 ---MCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 12345777788888888888888875532 2222 244566778888999999999987775443
No 323
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.83 Score=45.80 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=43.8
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH-HHhhCCCChHHHHHH------HHHHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR-AVDINPRDYRAWYGL------GQAYEM 417 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------~~~~~~ 417 (557)
..+...+....+...+..++..+|.+..+..+++......|....+...+.. +....|++......+ +.....
T Consensus 75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (620)
T COG3914 75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL 154 (620)
T ss_pred hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence 3333444444444444555555555555555554444444433333333322 444444444333222 444444
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRLW 442 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~~ 442 (557)
+|+..++.....++....|.++++.
T Consensus 155 l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 155 LGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred hccHHHHHHHHHHHHHhhhhhhhhH
Confidence 4444455555555555544444433
No 324
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.19 E-value=2 Score=43.68 Aligned_cols=178 Identities=15% Similarity=0.163 Sum_probs=88.6
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCC---H-HHHHHHhHHHHhcCCchHHHHHHHHHHh--hCCCChHHHHHHHHHH
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNY---L-SAWTLMGHEYVEMKNTPAAIDAYRRAVD--INPRDYRAWYGLGQAY 415 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 415 (557)
.+|..+...|++.+|.+.|.+.=..+..- . --.+-.+..++..|..++-....++--+ .+-+.+. .-+..+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmL 713 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEML 713 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHh
Confidence 45666666777777777776532111100 0 1123455666666666655555544322 1112222 234555
Q ss_pred HHhCChHHHHHHH----------HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 416 EMMHMPLYALHYF----------RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 416 ~~~~~~~~A~~~~----------~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
...|+.++|+... +-+-+++..+.+.+..++..+.. ...+.-|.+.|++.-. ...+..++
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~--l~~~gLAaeIF~k~gD--------~ksiVqlH 783 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK--LDSPGLAAEIFLKMGD--------LKSLVQLH 783 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh--ccccchHHHHHHHhcc--------HHHHhhhe
Confidence 6667777666543 22223333344445555555555 5555555555554421 12344455
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
...+++.+|...-++.-+ -.+.+++-.|+.+....+|++|.+.|.++
T Consensus 784 ve~~~W~eAFalAe~hPe----------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHPE----------FKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eecccchHhHhhhhhCcc----------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 566666666655443222 12345555555555555555555555554
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.08 E-value=3.9 Score=40.42 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=69.3
Q ss_pred HHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 008705 446 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL--GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523 (557)
Q Consensus 446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 523 (557)
-..+.. .|-+.+|...|.+...+.|-....+..+..+-..+ -+..-+..+|+.++.. ...+++.|...-
T Consensus 467 l~~~~e--~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-------fg~d~~lw~~y~ 537 (568)
T KOG2396|consen 467 LDWAYE--SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-------FGADSDLWMDYM 537 (568)
T ss_pred HHHHHH--hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-------hCCChHHHHHHH
Confidence 344445 67788999999988888887766666555543222 2367778888888873 337788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 524 THCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
......|..+.+-..|.+|++.-.+..
T Consensus 538 ~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 538 KEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HhhccCCCcccccHHHHHHHHhhChhh
Confidence 888889999999999998887644433
No 326
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.01 E-value=0.054 Score=49.28 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=65.8
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH-HhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705 325 LAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL-MGHEYVEMKNTPAAIDAYRRAVDINPR 403 (557)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~p~ 403 (557)
.+.+.....+.++..|...+.+....|.+.+--..|.++++.+|.+.+.|.. -+..+...++++.+...|.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444455566778888888877777788888888888888888888888776 556677778888888888888888888
Q ss_pred ChHHHHHH
Q 008705 404 DYRAWYGL 411 (557)
Q Consensus 404 ~~~~~~~l 411 (557)
++..|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 88877644
No 327
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=1.5 Score=44.15 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=105.7
Q ss_pred hCchHHHHHHHHHHHhcCcCCHHHHHH--HhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHH
Q 008705 350 KGQHEKSVVYFRRALKLDKNYLSAWTL--MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHY 427 (557)
Q Consensus 350 ~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 427 (557)
.+...-++..+...+.+++.++..+.. +...+...+....+.-..+.++..+|.+..+..+|+.+....|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344444666666666777777766433 466667778888889999999999999999999999988887777666655
Q ss_pred HHH-HHhcCCCCHHHHHHH------HHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705 428 FRK-SVFLQPNDSRLWIAM------AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 490 (557)
Q Consensus 428 ~~~-a~~~~p~~~~~~~~l------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 490 (557)
+.. +....|.+......+ +..... +|+..++....+++....|.++.+...+.....+.-.
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs 191 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL--LGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS 191 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence 555 788888888877666 777777 8999999999999999999998777777666444433
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.99 E-value=0.42 Score=38.93 Aligned_cols=69 Identities=10% Similarity=-0.142 Sum_probs=32.2
Q ss_pred hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
..++.+++...+...--+.|+....-..-|.++...|++.+|+..++....-.+..+..--.++.|+..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 344444444444444444444444444444444444444444444444444444444444444444444
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.99 E-value=0.35 Score=39.40 Aligned_cols=82 Identities=17% Similarity=0.011 Sum_probs=64.0
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
......-...++++++...+...--+.|+.+.+-..-|.++.. .|++.+|+..|+....-.+..+...-.++.|+..+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~--rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA--RGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH--cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 3344444557888888888888777888888888888888888 88888888888888877777777777788888888
Q ss_pred CCHH
Q 008705 489 GRDE 492 (557)
Q Consensus 489 g~~~ 492 (557)
|+.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 7754
No 330
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.90 E-value=0.075 Score=48.39 Aligned_cols=88 Identities=8% Similarity=0.016 Sum_probs=73.5
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH-HHHHHhhhCchHHHHHHHHHHHhcCcC
Q 008705 291 IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI-IGNYYSLKGQHEKSVVYFRRALKLDKN 369 (557)
Q Consensus 291 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 369 (557)
.|.+.-...|.++..|..++......+.+.....++..++...|.+.+.|.. .+.-+...++++.+...|.+++..+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4556666778888888888888888888999999999999999999999877 555677788999999999999999999
Q ss_pred CHHHHHHHh
Q 008705 370 YLSAWTLMG 378 (557)
Q Consensus 370 ~~~~~~~l~ 378 (557)
.+..|...-
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 988886543
No 331
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.85 E-value=0.38 Score=52.79 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=125.6
Q ss_pred HHHHhHHHHhcCCchHHHH------HHHH-HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC--------CCC
Q 008705 374 WTLMGHEYVEMKNTPAAID------AYRR-AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ--------PND 438 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~ 438 (557)
....|......|.+.+|.+ .+.. .-.+.|.....+..++.++..+++.++|+..-.++.-+. |+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3455666667777777777 4442 223567778889999999999999999999988876542 445
Q ss_pred HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhc
Q 008705 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 510 (557)
Q Consensus 439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (557)
...+.+++..... .++...|+..+.++..+ .|.-.....+++.++...++++.|+.+.+.|+........
T Consensus 1015 ~~~y~nlal~~f~--~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFA--VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred HHHhhHHHHHHHh--ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6677888888888 88889999999888765 3444556788999999999999999999999984333222
Q ss_pred -CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 511 -EGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 511 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
..-.....+..+++.+..+|++..|....+....+
T Consensus 1093 ~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 22345666777888888888888777766665543
No 332
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.85 E-value=0.047 Score=47.46 Aligned_cols=60 Identities=22% Similarity=0.422 Sum_probs=47.7
Q ss_pred HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh
Q 008705 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY 405 (557)
Q Consensus 346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 405 (557)
.....++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345667788888888888888888888888888888888888888888888888888763
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.83 E-value=0.086 Score=32.60 Aligned_cols=31 Identities=45% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (557)
.++.++|.+|...|++++|..++++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4677788888888888888888888887443
No 334
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=2.1 Score=42.96 Aligned_cols=166 Identities=13% Similarity=0.107 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHH
Q 008705 282 LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFR 361 (557)
Q Consensus 282 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 361 (557)
...|++|...|.-+....+.+.-.. ++...|+..+....++.+...+|+.+-|....+
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~----------------------lL~ssPYHvdsLLqva~~~r~qgD~e~aadLie 308 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLI----------------------LLISSPYHVDSLLQVADIFRFQGDREMAADLIE 308 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceee----------------------eeccCCcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence 4557788888877776544332111 123457777888888888888888777777666
Q ss_pred HHHhc-----C----------------cCCHH---HHHHHhHHHHhcCCchHHHHHHHHHHhhCCC-ChHHHHHHHHHH-
Q 008705 362 RALKL-----D----------------KNYLS---AWTLMGHEYVEMKNTPAAIDAYRRAVDINPR-DYRAWYGLGQAY- 415 (557)
Q Consensus 362 ~al~~-----~----------------p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~- 415 (557)
+++-. . |.+-. +.+..-..+...|-+..|.++++-.+.++|. |+-+...+..+|
T Consensus 309 R~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 309 RGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred HHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 66521 1 11111 1222233445678888888888888888887 666655555544
Q ss_pred HHhCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHhHHhcCc---HHHHHHHHHHHHhcCC
Q 008705 416 EMMHMPLYALHYFRKSVF-----LQPNDSRLWIAMAQCYETEQLHM---LEEAIKCYRRAANCND 472 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~---~~~A~~~~~~al~~~p 472 (557)
.+..+|.--+..++..-. .-|+.+ .-..++..|.. ... -+.|...+.+|+...|
T Consensus 389 LrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~--~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 389 LRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLR--KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHh--cCChhhHHHHHHHHHHHHHhCc
Confidence 345566666666655422 223322 22345555554 333 4567777888877665
No 335
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.64 E-value=3.7 Score=37.98 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH--HhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL--MGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
.+|+.+..+|..|...|++.+|..+|-.. ++...... +-...... -.|.....+...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTK---------------GYPSEADLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHh---------------cCCcchhHHHHHH
Confidence 47889999999999999999988887532 22222111 11122222 2333444444444
Q ss_pred H-HHHHhCChHHHHHHHHHHHhc
Q 008705 413 Q-AYEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 413 ~-~~~~~~~~~~A~~~~~~a~~~ 434 (557)
. .|...++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 3 466678888888766665544
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.64 E-value=0.31 Score=43.38 Aligned_cols=61 Identities=26% Similarity=0.392 Sum_probs=38.6
Q ss_pred HHHHHHHHHhHHhcCcH-------HHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 441 LWIAMAQCYETEQLHML-------EEAIKCYRRAANCND------SEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 441 ~~~~l~~~~~~~~~~~~-------~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
++..+|++|.. .|+. ..|+..|++++.... +...+.+.+|.+..+.|++++|..+|.+++.
T Consensus 120 l~LrlAWlyR~--~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 120 LCLRLAWLYRD--LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 34445555544 4443 344445555554322 2245778888888888999999888888887
No 337
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.41 Score=48.25 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=57.3
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 449 (557)
+-|.-.++..+|..+++.|...+..-|.| ......++.+|..+.+.+.|.+++++|-+.+|.++-....+-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444556666666777666666655544 344556666666677777777777777666666666555555555
Q ss_pred hHHhcCcHHHHHHHHHHHHh
Q 008705 450 ETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 450 ~~~~~~~~~~A~~~~~~al~ 469 (557)
.. .+.-++|+.+..+...
T Consensus 439 ~~--E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 439 LA--EDKSEEALTCLQKIKS 456 (872)
T ss_pred HH--hcchHHHHHHHHHHHh
Confidence 55 6666666666665543
No 338
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.25 E-value=0.15 Score=49.97 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=75.1
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc---CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM---KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 419 (557)
-|+-.+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+|+.|+.++..++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 344444456677888888888888888888888888777765 35566777777888888888888999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCH
Q 008705 420 MPLYALHYFRKSVFLQPNDS 439 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~~ 439 (557)
++.+|+.+...+....|.+.
T Consensus 460 r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hHHHhhhhHHHHhhcCchhh
Confidence 99998888887777777553
No 339
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.15 E-value=0.61 Score=33.27 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY 258 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 258 (557)
....|.-++...+.++|+..++++++..+.....|..|+- +..+|...|+|.+.+.+-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~----------------------l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGY----------------------LIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999998888877743 477899999999988766
Q ss_pred HHHHh
Q 008705 259 EYLQG 263 (557)
Q Consensus 259 ~~~l~ 263 (557)
.+-++
T Consensus 67 ~~Q~~ 71 (80)
T PF10579_consen 67 LQQLE 71 (80)
T ss_pred HHHHH
Confidence 55443
No 340
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=6.3 Score=38.07 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC--chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----ChHHHHH
Q 008705 353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN--TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----MPLYALH 426 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~ 426 (557)
.++-+.+...+++.+|+...+|+.+..++.+.+. +..=+....++++.+|.+..+|...=.+..... ...+=+.
T Consensus 91 ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ 170 (421)
T KOG0529|consen 91 LDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE 170 (421)
T ss_pred hHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH
Confidence 4455566666666666666666666666665543 455566666666666666666654444333322 2344556
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 427 YFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
+..+++.-++.+..+|.....++.
T Consensus 171 ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 171 FTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHhccchhhhHHHHHHHHHH
Confidence 666666666666666665555544
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.86 E-value=10 Score=40.10 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=21.4
Q ss_pred HHHhhhhhhHHHHHHHH----hhhcCCchhhHHHHHHHHh
Q 008705 97 AKSYFDCREYRRAAHVL----RDQTGRRSVFLRCYALYLA 132 (557)
Q Consensus 97 a~~~~~~~~y~~A~~~l----~~~~~~~~~~l~~~~~~l~ 132 (557)
---.+++|.++.|..+. .........|..+...|..
T Consensus 118 Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 118 IYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 33445789999999999 3333444556555544444
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.82 E-value=1.6 Score=34.82 Aligned_cols=76 Identities=28% Similarity=0.246 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH-hCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHH
Q 008705 268 SNYIQAQIAKAQYSLR---EFEQVEVIFEELLR-NDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCII 343 (557)
Q Consensus 268 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 343 (557)
+....+.+|+++.... +..+.+.+++.+++ ..|.. +-+..+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~---------------------------------rRe~lyYL 77 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER---------------------------------RRECLYYL 77 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc---------------------------------chhhhhhh
Confidence 4455677777776654 45667777777776 33332 34556667
Q ss_pred HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH
Q 008705 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL 376 (557)
Q Consensus 344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 376 (557)
+..+++.++|++++.+.+..++..|++..+...
T Consensus 78 Avg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 78 AVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 777888888888888888888888887766544
No 343
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=93.77 E-value=7.8 Score=38.44 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=73.9
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHH
Q 008705 195 ARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQ 274 (557)
Q Consensus 195 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 274 (557)
-...|+.++...+.+...|... .....+.+.+.+--.+|.+++..+|+++++|..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~y-------------------------i~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~ 144 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSY-------------------------IAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIY 144 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHH-------------------------HHHHHHhcchhHHHHHHHHHHHhCCCCchhHHh
Confidence 3457888888888888877665 333444555888889999999999999999999
Q ss_pred HHHHHHhccc-HHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705 275 IAKAQYSLRE-FEQVEVIFEELLRNDPYRVDDMDMYSN 311 (557)
Q Consensus 275 la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (557)
-|.-.+..+. .+.|..+|.+.++.+|+.+..+..+-.
T Consensus 145 aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 145 AAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 9988887776 899999999999999998877655443
No 344
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.93 Score=45.83 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
+.+-|.-.++..+|..+++.|...+..-|.| ......++.||.. +.+.+.|+++++.|-+.+|.++-....+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~--L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK--LEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3445667788999999999999999887766 3466788999999 9999999999999999999999988888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 008705 482 AKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~~ 504 (557)
-.+....|+-++|+.+..+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88999999999999998887764
No 345
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.72 E-value=0.64 Score=35.17 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=38.4
Q ss_pred cCcHHHHHHHHHHHHhcCC---------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705 454 LHMLEEAIKCYRRAANCND---------SEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 505 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (557)
.|++.+|++.+.+.+.... ....++.++|.++...|++++|+..++++++..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6778888777777665421 123467788888899999999999999998843
No 346
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.68 E-value=0.29 Score=48.13 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=80.7
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM---HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL 454 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 454 (557)
|.-.+..+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-+..+++++|....+|+.|+.++.. +
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e--l 458 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE--L 458 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH--H
Confidence 33344455677899999999999999988888888888765 566678888889999999999999999999999 9
Q ss_pred CcHHHHHHHHHHHHhcCCChH
Q 008705 455 HMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~~p~~~ 475 (557)
+++.+|+.+...+....|.+.
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhh
Confidence 999999999988887777543
No 347
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=3.1 Score=40.07 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHhHHHH------------hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC-
Q 008705 354 EKSVVYFRRALKLDKNYLSAWTLMGHEYV------------EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM- 420 (557)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~- 420 (557)
+++++.=.+.+..+|+...+|...-.++. ...-.++-+.+...+++.+|++..+|+.+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 34556666666667776666554322222 22245677888899999999999999999999987764
Q ss_pred -hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH------cCCH
Q 008705 421 -PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA------LGRD 491 (557)
Q Consensus 421 -~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g~~ 491 (557)
+..=+.+++++++.+|.+..+|...-.+..... .....+-+.+..+++..++.+..+|.....++.. .|+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~- 204 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN- 204 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc-
Confidence 578899999999999999888877665554400 2224566788899999899998898888777653 232
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 008705 492 EEAAFYYKKDLERMEAEEREGPNMVEALIF 521 (557)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 521 (557)
.-....+.+-++......-.+|++..+|+.
T Consensus 205 ~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 205 FMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred cCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 011233333333333333368888888876
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.65 E-value=0.13 Score=31.81 Aligned_cols=30 Identities=40% Similarity=0.441 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 516 VEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
..++.++|.+|..+|++++|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999875
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.46 E-value=1.2 Score=49.23 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=125.4
Q ss_pred HHHHHHHhhhCchHHHHH------HHH-HHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--------CCCh
Q 008705 341 CIIGNYYSLKGQHEKSVV------YFR-RALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN--------PRDY 405 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~------~~~-~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~ 405 (557)
...|......|.+.+|.+ .+. ..-.+.|.....+..++.++...+++++|+..-.++.-+. |+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 445555566677776766 444 2233467778889999999999999999999988876542 4456
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-----
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND----- 472 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p----- 472 (557)
..+.+++...+..++...|+..+.++..+ .|.-.....+++.++.. .++++.|+++.+.|.....
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~--v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG--VEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhcCc
Confidence 77888998889999999999999888764 35555567888888888 8999999999999988632
Q ss_pred ---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705 473 ---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507 (557)
Q Consensus 473 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (557)
.....+..+++++...+++..|....+.....+..
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 22446777888888888888888877777665443
No 350
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=7.7 Score=40.98 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=34.4
Q ss_pred HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc
Q 008705 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL 366 (557)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 366 (557)
.++..+..+.-|..+++..........+++...|..++.+|++++|...|-+++..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 33444444444444444422222224456677888888999999999888888764
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=4.3 Score=34.14 Aligned_cols=142 Identities=15% Similarity=0.017 Sum_probs=95.8
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh--HHHHHHHHHHHHhCChH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY--RAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~ 422 (557)
.-|...+.-.++-..|..++++ ...+..++|+..|...-+-+-... -+.+..|.+....|+..
T Consensus 47 y~yw~~s~as~sgd~flaAL~l---------------A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta 111 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKL---------------AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTA 111 (221)
T ss_pred eehhcccccccchHHHHHHHHH---------------HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHH
Confidence 3344555555555555555543 355678888888887766554443 34566778888889999
Q ss_pred HHHHHHHHHHhcCCC--CH--HHHHHHHHHHhHHhcCcHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705 423 YALHYFRKSVFLQPN--DS--RLWIAMAQCYETEQLHMLEEAIKCYRRAA-NCNDSEAIALNQLAKLHHALGRDEEAAFY 497 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~--~~--~~~~~l~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 497 (557)
.|+..|..+-.-.|. -. .+...-+.++.. .|.|++-....+..- ..+|-...+...||..-++.|++..|..+
T Consensus 112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD--~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~ 189 (221)
T COG4649 112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD--NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSW 189 (221)
T ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc--cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHH
Confidence 999999887665432 11 233445666677 888888766655432 22444456778899999999999999999
Q ss_pred HHHHHH
Q 008705 498 YKKDLE 503 (557)
Q Consensus 498 ~~~al~ 503 (557)
|.....
T Consensus 190 F~qia~ 195 (221)
T COG4649 190 FVQIAN 195 (221)
T ss_pred HHHHHc
Confidence 998776
No 352
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.33 E-value=0.43 Score=36.14 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=48.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 485 HHALGRDEEAAFYYKKDLERMEAEEREG--PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
..+.|++.+|.+.+.+............ .....+...+|.++...|++++|...+++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4578999999999999888543322211 1346678889999999999999999999999874
No 353
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.25 E-value=1.1 Score=42.85 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcC--------CH----------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKN--------YL----------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD 404 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~--------~~----------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 404 (557)
-|..+++.++|..|..-|..++++..+ .+ .+-..+..+|+.+++.+.|+..-.+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 466778889999999999999987322 11 123467788888888888888888888888888
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKS 431 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a 431 (557)
+.-+...+.++..+.+|.+|-..+--+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877665544
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.11 E-value=1.7 Score=34.67 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 517 EALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 517 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
+..+.||.-+.+.|+|+.+..+.+.+++..|+
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 34444555555555555555555555554433
No 355
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.02 E-value=14 Score=39.19 Aligned_cols=55 Identities=7% Similarity=-0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
...+..+...|+...|...+..++. . .++.-...++.+..+.|.++.|+....++
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~-------~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVA-------S--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-------c--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 4567778888999999999988777 2 23455677888888999988888766544
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.00 E-value=3.4 Score=35.89 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=24.5
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhCChHHH
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR----DYRAWYGLGQAYEMMHMPLYA 424 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A 424 (557)
++..+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444333 33444555555555544322 244555555555555555544
No 357
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=92.94 E-value=5.2 Score=33.94 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=85.2
Q ss_pred ChhHHHHHHHHHhh-hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHH-----hcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705 336 RPESCCIIGNYYSL-KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV-----EMKNTPAAIDAYRRAVDINPRDYRAWY 409 (557)
Q Consensus 336 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (557)
+|+.+..+|.++.. +.+|++|...|+.--.-+ .++...+.+|..++ ..++...|++.+..+... +++.+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHh
Confidence 55666666655543 345566666655543322 23344444444333 123455666666655542 3444555
Q ss_pred HHHHHHHHh-----C--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH----------------------hcCcHHHH
Q 008705 410 GLGQAYEMM-----H--MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE----------------------QLHMLEEA 460 (557)
Q Consensus 410 ~l~~~~~~~-----~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~----------------------~~~~~~~A 460 (557)
.+|.++..- + +.++|..++.++..+. +..+-+.|...++.+ -..+.+.|
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka 187 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKA 187 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHH
Confidence 555544321 1 1445666666665543 222233333333220 04567778
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHH
Q 008705 461 IKCYRRAANCNDSEAIALNQLAKLHHAL----GRDEEAAFYYKKDLERM 505 (557)
Q Consensus 461 ~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 505 (557)
.++-.+|-++ .++.+..++.+.|..- ++.++|..+-.++.+..
T Consensus 188 ~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 188 LQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred HHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 8887777766 3466666777766432 36678888777777743
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.78 E-value=6.8 Score=39.33 Aligned_cols=130 Identities=16% Similarity=0.095 Sum_probs=70.5
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 419 (557)
...++.++..+|-++.|+.+.+ ++...+ .+.++.|+.+.|.+..++ .++...|..||.....+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT--------DPDHRF---ELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence 4456667777777777765432 233333 334567777777664432 336677888888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 499 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 499 (557)
+++-|..+|+++-. +..+..+|.- .|+.+.=.+..+.+......+ ..-.++...|+.++.+..+.
T Consensus 362 ~~~lAe~c~~k~~d--------~~~L~lLy~~--~g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 362 NIELAEECYQKAKD--------FSGLLLLYSS--TGDREKLSKLAKIAEERGDIN-----IAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHH--CT-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHhhcC--------ccccHHHHHH--hCCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCCHHHHHHHHH
Confidence 88888888877532 3344555555 666555555544444332211 11223344555555555544
Q ss_pred H
Q 008705 500 K 500 (557)
Q Consensus 500 ~ 500 (557)
+
T Consensus 427 ~ 427 (443)
T PF04053_consen 427 E 427 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 359
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.64 E-value=8.8 Score=35.84 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=59.8
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA 424 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 424 (557)
....+..+..+-++.-..+++++|.+..++..++..- ..-..+|.+.++++++..... +...+.....|...+|
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~----yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI----YRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH----HhhHHHHhhhccchhh
Confidence 3334445566667777777888888877777776542 334566777777777643221 1122222222222222
Q ss_pred HHHHHHHHhcCCCCHHH--HHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705 425 LHYFRKSVFLQPNDSRL--WIAMAQCYETEQLHMLEEAIKCYRRAANCND 472 (557)
Q Consensus 425 ~~~~~~a~~~~p~~~~~--~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p 472 (557)
. .....+..+ -..++.|-.+ +|+..+|++.++...+..|
T Consensus 266 ~-------~rRDtnvl~YIKRRLAMCARk--lGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 Q-------LRRDTNVLVYIKRRLAMCARK--LGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred h-------hhcccchhhHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhcc
Confidence 1 111122222 2345666666 7777777777766655554
No 360
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.33 E-value=17 Score=38.49 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=64.4
Q ss_pred HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-hHHH
Q 008705 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI-ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-MVEA 518 (557)
Q Consensus 441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~ 518 (557)
.+...|.++.. .+++.+.+..++...+...-.... .|.....+-...|+...|..++++++... ..|+ ...+
T Consensus 463 ~~q~wA~~E~s-l~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~-----~~~~~~~ev 536 (881)
T KOG0128|consen 463 VLQLWAQVEAS-LLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV-----VDPEDALEV 536 (881)
T ss_pred HHHHHHHHHHH-HhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC-----cCchhHHHH
Confidence 44444555443 267788888888777665544444 67777778888899999999999888731 2343 3456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 519 LIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 519 ~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
+..+-......|.++.....-.+.+
T Consensus 537 ~~~~~r~Ere~gtl~~~~~~~~~~~ 561 (881)
T KOG0128|consen 537 LEFFRRFEREYGTLESFDLCPEKVL 561 (881)
T ss_pred HHHHHHHHhccccHHHHhhhHHhhc
Confidence 6666677777788777666555543
No 361
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=5.4 Score=36.43 Aligned_cols=201 Identities=11% Similarity=0.008 Sum_probs=122.6
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcC--------CHHHHHHHhHHHHhcCCchHHHHHH---HHHHhhC--CCChHH
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKN--------YLSAWTLMGHEYVEMKNTPAAIDAY---RRAVDIN--PRDYRA 407 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~---~~al~~~--p~~~~~ 407 (557)
..+++-....+++++|+..|.+.+..... ...+...++.+|...|++..-.+.. +.+.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677777888999999999998865211 2345678899999999876543333 3332221 222222
Q ss_pred HHHHHHHH-HHhCChHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhHHhcCcHHHHHHHHHHHHhc------CCCh
Q 008705 408 WYGLGQAY-EMMHMPLYALHYFRKSVFLQPNDSR------LWIAMAQCYETEQLHMLEEAIKCYRRAANC------NDSE 474 (557)
Q Consensus 408 ~~~l~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~l~~~~~~~~~~~~~~A~~~~~~al~~------~p~~ 474 (557)
...|..-+ .....++.-+..+...++......+ .-..+..++.+ .|+|.+|+......+.. .++-
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~--~~~YsdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYK--TGKYSDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHhhcCccce
Confidence 22222111 1233455555555555543322212 22456677788 99999999887765532 2344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH--HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL--IFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
..++..-..+|....+..++...+..+-... ... .-|....+. ..-|..+....+|..|..+|-.+++-
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~A-ns~-YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLA-NSA-YCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHh-hcc-CCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 5677778889999999988888887765521 111 123333333 33366777888999999999998875
No 362
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=12 Score=37.87 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=103.7
Q ss_pred hCchHHHHHHHHHHHhc------------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----CC----------
Q 008705 350 KGQHEKSVVYFRRALKL------------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----NP---------- 402 (557)
Q Consensus 350 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p---------- 402 (557)
...|++|...|.-+... .|-+...+..++.++..+|+.+-|.....+++-. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44567777777766654 4667788999999999999999988888887632 11
Q ss_pred ------CC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH----
Q 008705 403 ------RD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQLHMLEEAIKCYRRAA---- 468 (557)
Q Consensus 403 ------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al---- 468 (557)
.+ ..+.+..-+...+.|-+..|.++++-.++++|. ||.+...+..+|.. ...+|+=-++.++..-
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL-rareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL-RAREYQWIIELSNEPENMNK 409 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH-HHHhHHHHHHHHHHHHhhcc
Confidence 11 233344455667789999999999999999998 88776666666653 1566666666666552
Q ss_pred -hcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 008705 469 -NCNDSEAIALNQLAKLHHALGR---DEEAAFYYKKDLER 504 (557)
Q Consensus 469 -~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 504 (557)
..-|+.+ .-..+|..|..... -..|...+.+|+..
T Consensus 410 l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 410 LSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 2234432 22345555655554 45677778888774
No 363
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=1.1 Score=40.81 Aligned_cols=65 Identities=18% Similarity=0.051 Sum_probs=39.8
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (557)
..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|+..+...++..|+++.+-.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666554433
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.82 E-value=0.26 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFV 200 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~ 200 (557)
|.+.+.+|.++...|++++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4578899999999999999999876
No 365
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.78 E-value=7.7 Score=35.23 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCC
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQY-SLREFEQVEVIFEELLRNDP 300 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p 300 (557)
.++|.+....|+|++.+..+.+++..+|. +.+-...+..+|- ..|....+...+........
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~ 68 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE 68 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc
Confidence 56799999999999999999999988775 4444555555553 34666666666666555443
No 366
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.65 E-value=0.26 Score=26.86 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 517 EALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 517 ~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
.+.+.+|.++...|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998763
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.63 E-value=9.6 Score=34.97 Aligned_cols=59 Identities=25% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (557)
.+...+|..|.. .|++++|+++|+.+......+ ..++..+..|+...|+.+..+.+.-+
T Consensus 179 ~l~~~~A~ey~~--~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFR--LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345677888888 888888888888886543222 34667777888888887776665433
No 368
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.63 E-value=21 Score=37.93 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=43.2
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhhcCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 476 IALNQLAKLHH-ALGRDEEAAFYYKKDLERMEAEEREGPNMV-EALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 476 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
..+...|.++. .+++.+.|....+..+. ..-... ..|+....+-...|+...|..++++|+.-
T Consensus 462 ~~~q~wA~~E~sl~~nmd~~R~iWn~imt-------y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 462 EVLQLWAQVEASLLKNMDKAREIWNFIMT-------YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HHHHHHHHHHHHHhhchhhhhHhhhcccc-------CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 34445555544 34677888887777666 222233 36777788888889999999988888764
No 369
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.51 E-value=1.2 Score=42.79 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=71.0
Q ss_pred HHHHHhccchhHHHHHHHHHHhhCC--------CCh----------hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH
Q 008705 310 SNVLYAKECFSALSYLAHRVFMTDK--------YRP----------ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL 371 (557)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 371 (557)
+...+.++.+..+.--+..+++.-. ..+ .+.-.+..||...++.+-|+.+-.+.+.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4456677888888777777766431 211 1234688899999999999999999999999999
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAV 398 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al 398 (557)
.-+...+.++..+.+|.+|-+.+.-+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776654
No 370
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.46 E-value=0.57 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHH--HHHHhccCCCC
Q 008705 177 FGLYLYGIVLKDKGNENLARTV--FVESVNSYPWN 209 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p~~ 209 (557)
+.++.+|..+..+|++++|+.. |.-+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4678899999999999999999 54777777653
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.35 E-value=17 Score=36.50 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=80.1
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCC-HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHH
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNY-LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYAL 425 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 425 (557)
....++++++....... ++-|.- ..-...++..+...|-++.|+..-+ |++..+.|+ .+.|+.+.|.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLA---l~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELA---LQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHH---HHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHH---HhcCCHHHHH
Confidence 34578888877776522 222332 2335566777778888887776532 455555544 5689999888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
+..+ ..+++..|..+|..... .|+++-|.++|+++-. +..|..+|...|+.+.=.+..+.+..
T Consensus 339 ~~a~-----~~~~~~~W~~Lg~~AL~--~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 339 EIAK-----ELDDPEKWKQLGDEALR--QGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHCC-----CCSTHHHHHHHHHHHHH--TTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHH-----hcCcHHHHHHHHHHHHH--cCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7553 33578899999999999 9999999999998732 34566677777776655555544444
No 372
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=91.33 E-value=11 Score=34.21 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHh-hhcCCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHhcc
Q 008705 491 DEEAAFYYKKDLERMEA-EEREGPNMVEALIFLATHC-RAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 491 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~ 545 (557)
.+.|...|++|++.... -.+.+|-.-...++.+..| ...|+.++|....+++++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 47888899999986655 3344555555666666665 4589999999998888753
No 373
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.00 E-value=14 Score=34.65 Aligned_cols=196 Identities=10% Similarity=0.004 Sum_probs=94.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705 273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ 352 (557)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 352 (557)
..+.+...+..+..+-++.-..+++++|....++..++.- ......++..+++++++.. +..+...+.....|.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhcc
Confidence 3344445555666666777777777777766555544421 1112233444444433321 111111111111111
Q ss_pred hHHHHHHHHHHHhcCcCCHH--HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC--hHHHHHHHHHHHHhCChHHHHHHH
Q 008705 353 HEKSVVYFRRALKLDKNYLS--AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD--YRAWYGLGQAYEMMHMPLYALHYF 428 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~ 428 (557)
..+|. .+. ..+.. .-..++.+..++|+..+|++.++...+..|-. ..++-+|..++....-|.+....+
T Consensus 262 ~~da~------~rR-Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 262 QHEAQ------LRR-DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred chhhh------hhc-ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111 11222 23457888889999999999999888776632 223344555555444444433333
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHhH-----------HhcCc---HHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 429 RKSVFLQ-PNDSRLWIAMAQCYET-----------EQLHM---LEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 429 ~~a~~~~-p~~~~~~~~l~~~~~~-----------~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
-+.-++. |.++.+.+.-+.+-.+ .+.|- -..|++...++.+.+|..|..+..+
T Consensus 335 akYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 335 AKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 3332222 3333222211111100 00221 2357888899999998877655443
No 374
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.87 E-value=13 Score=34.31 Aligned_cols=138 Identities=19% Similarity=0.096 Sum_probs=70.7
Q ss_pred CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
.++..+..+|..+.+.|++.+|..+|-.. ++...... ..-.+....+-.|.....+...+.+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~-------------~~ll~~~~~~~~~~e~dlfi~RaVL 149 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAY-------------VMLLEEWSTKGYPSEADLFIARAVL 149 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHH-------------HHHHHHHHHHTSS--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHH-------------HHHHHHHHHhcCCcchhHHHHHHHH
Confidence 46788999999999999988887776432 12221111 0011122233456666666666554
Q ss_pred -HhHHhcCcHHHHHHHHHHHHhc----CC-----------ChHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHhhhc
Q 008705 449 -YETEQLHMLEEAIKCYRRAANC----ND-----------SEAIALNQL--AKLHHALGRDEEAAFYYKKDLERMEAEER 510 (557)
Q Consensus 449 -~~~~~~~~~~~A~~~~~~al~~----~p-----------~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 510 (557)
|.. .++...|...+....+. .| ..|. ++-+ -..-.+.+ +...|....+.......
T Consensus 150 ~yL~--l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~e~~----~~~~F~~L~~~Y~~~L~ 222 (260)
T PF04190_consen 150 QYLC--LGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTCERD----NLPLFKKLCEKYKPSLK 222 (260)
T ss_dssp HHHH--TTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHHHHT-----HHHHHHHHHHTHH---
T ss_pred HHHH--hcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCch-HHHHHHHHHHHhcC----cHHHHHHHHHHhCcccc
Confidence 445 79999998877666554 32 2222 1111 11122333 23556665554443333
Q ss_pred CCcchHHHHHHHHHHHHHcCC
Q 008705 511 EGPNMVEALIFLATHCRAHGR 531 (557)
Q Consensus 511 ~~~~~~~~~~~la~~~~~~g~ 531 (557)
.+|........+|..|+....
T Consensus 223 rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 223 RDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHTHHHHHHHHHHHH---S
T ss_pred ccHHHHHHHHHHHHHHCCCCC
Confidence 456777788889999887543
No 375
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.83 E-value=0.78 Score=27.34 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhCChHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHY 427 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~ 427 (557)
|+.+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444444444444444
No 376
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=2 Score=39.11 Aligned_cols=72 Identities=21% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 447 (557)
++=..+...++++.|..+..+.+.++|.++.-+.-.|.+|.++|.+.-|+..+...++..|+++.+-...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 444567778888888888888888888888888888888888888888888888888888888765544433
No 377
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.59 E-value=2.2 Score=39.33 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al 468 (557)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|.. .|+...|+..|++.-
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~--~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV--NGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--cCCchHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555 555555555555443
No 378
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=90.51 E-value=10 Score=32.29 Aligned_cols=55 Identities=16% Similarity=0.037 Sum_probs=34.9
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHhc
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANC 470 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~~ 470 (557)
.+....+.+.|..+--++.+++ .+.+-.++...|..+ --++-++|..+-.+|.++
T Consensus 177 ~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 3444567788888888887764 556666666666541 123566777776666654
No 379
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.33 E-value=12 Score=32.70 Aligned_cols=161 Identities=14% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhc---hhHHHHHHHHhhhhc--
Q 008705 96 LAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVN---RELISLERELSTSWK-- 170 (557)
Q Consensus 96 la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~-- 170 (557)
=|.|-+...+.-+....+++..+....+-.+ ..+..-.+..+-+..+ ..+......+ ..+-...+.++++..
T Consensus 28 Dg~Cr~eRtdLI~~Ry~~~~~pt~~~ky~~l--~~le~Y~kCielAa~I-q~i~~~e~k~~R~~a~~~s~~~l~~L~~~t 104 (203)
T PF11207_consen 28 DGWCRYERTDLIWHRYELKKNPTDKNKYQLL--EALEKYSKCIELAAQI-QHIKQKERKTDRFRALLHSYQELERLQEET 104 (203)
T ss_pred chhhccHhHHHHHHHHHHhcCCchHHHHHHH--HHHHHHHHHHHHHhcC-eeechHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777777777666643333332221 1122111122222222 1111111111 122222333333322
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCC-CCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYP-WNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR 249 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~ 249 (557)
.+..+|.++|. +...-+-++|...|-++-...- ..++. .+.+|..|. ..
T Consensus 105 k~S~dP~llYy----~Wsr~~d~~A~~~fL~~E~~~~l~t~el-------------------------q~aLAtyY~-kr 154 (203)
T PF11207_consen 105 KNSQDPYLLYY----HWSRFGDQEALRRFLQLEGTPELETAEL-------------------------QYALATYYT-KR 154 (203)
T ss_pred ccCCCccHHHH----HhhccCcHHHHHHHHHHcCCCCCCCHHH-------------------------HHHHHHHHH-cc
Confidence 24667766553 2344445677777776643222 12222 233455554 67
Q ss_pred hhHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcccHHHHH
Q 008705 250 MHKESLTKYEYLQGTFSF----SNYIQAQIAKAQYSLREFEQVE 289 (557)
Q Consensus 250 ~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~ 289 (557)
+.++++..+.++++..+. +++++..++.+++..|+++.|-
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 889999999999987443 6899999999999999999874
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.24 E-value=2 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=17.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705 274 QIAKAQYSLREFEQVEVIFEELLRNDPYR 302 (557)
Q Consensus 274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 302 (557)
..|.-+++..+.++|+..++++++..++.
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~ 39 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDR 39 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCCh
Confidence 34444555666666666666666665553
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.21 E-value=0.64 Score=29.15 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhhhcCCc
Q 008705 93 FYLLAKSYFDCREYRRAAHVLRDQTGRR 120 (557)
Q Consensus 93 ~~~la~~~~~~~~y~~A~~~l~~~~~~~ 120 (557)
.+-||++|+.+|+++.|..+|+.+....
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4679999999999999999999987533
No 382
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.78 E-value=0.61 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcc
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNS 205 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 205 (557)
.++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999874
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.53 E-value=1.9 Score=39.74 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=43.7
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVF 433 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 433 (557)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566666667777777777777777777777777777777777777777777777766654
No 384
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.47 E-value=0.66 Score=28.00 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=16.1
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDI 400 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 400 (557)
++..+|.+-+..++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455556666666666666666655543
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=26 Score=38.17 Aligned_cols=165 Identities=17% Similarity=0.136 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhc----CcCCHHHHHHHhHHHHhcCCc--hHHHHHHHHHHhhCCCChH------
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKL----DKNYLSAWTLMGHEYVEMKNT--PAAIDAYRRAVDINPRDYR------ 406 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~~~~------ 406 (557)
-+..++.+|...|++++|++.+.+...- ++.....+-.+-......+.. +-..++-.-.+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 3566888999999999999999998873 333334444444444455544 5555555555555554310
Q ss_pred -----HH--HHHHHHHHHhCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhHHh------cCcHHHHHHH--HHHHHh-
Q 008705 407 -----AW--YGLGQAYEMMHMPLYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQ------LHMLEEAIKC--YRRAAN- 469 (557)
Q Consensus 407 -----~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~------~~~~~~A~~~--~~~al~- 469 (557)
.- .....-|......+-++.+++.++..+.. +...+..+...|...- .++-+++.+. .++...
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 00 11122345667778889999999887655 3444455555554300 1222233333 222222
Q ss_pred ------cCCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 470 ------CNDS-------EAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 470 ------~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.+|. ....+...+.++.++|+.++|+..|-..+.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1221 134677888889999999999999887776
No 386
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.17 E-value=1.7 Score=40.71 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 356 SVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
|..+|.+|..+.|.....+..+|.++...|+.-.|+=+|-+++-.....+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666655555554433344555555555544
No 387
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.25 E-value=23 Score=33.38 Aligned_cols=128 Identities=16% Similarity=0.050 Sum_probs=77.5
Q ss_pred CchHHHHHHHHHHHhcCc-CCHHHHHHHhHHHHh-----cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH
Q 008705 351 GQHEKSVVYFRRALKLDK-NYLSAWTLMGHEYVE-----MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA 424 (557)
Q Consensus 351 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 424 (557)
+-.+++...+.+++.... .-....-.++.++.. .-++..-..+|.-...+.| ++.+-.+.+.......-.+.+
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhH
Confidence 445677777777776542 222222223333322 2355555666666666666 444445566666555556667
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 425 LHYFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 425 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
+...+..... -......+...|..+.+ +|+.++|...|++++.+.++..+..+..
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~r--Lgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLAR--LGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHH--hCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7666655443 12334456677888888 8999999999999988887776644433
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.89 E-value=29 Score=34.16 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=45.7
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcC---------cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLD---------KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
..+.+++...|||..|++.++.. +++ +-+...++.+|-+|+.+++|.+|++.|...+-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999887643 222 22456688999999999999999999998875
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.84 E-value=2 Score=40.28 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
|..+|.+|+.+.|.+...++.+|.++...|+.-.|+.+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888886655556677777766654
No 390
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.70 E-value=4.4 Score=37.12 Aligned_cols=69 Identities=23% Similarity=0.142 Sum_probs=55.5
Q ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705 442 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512 (557)
Q Consensus 442 ~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (557)
+...+..|.. .|.+.+|+++.++++.++|-+...+..+-.++...|+--.|...|++.-+.+...-+.+
T Consensus 282 lgkva~~yle--~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 282 LGKVARAYLE--AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHH--cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 4455667777 89999999999999999998888888888999999998888888888777655544443
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.65 E-value=6.6 Score=36.05 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=45.1
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
....+..|.+.|.+.+|+.+.++++.++|-+...+..+-.++...|+--.++..|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456677788888888888888888888888888888888888888777777776653
No 392
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.54 E-value=44 Score=35.76 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcc-CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNS-YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES 254 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A 254 (557)
..++..+|..+++.|++++|...|.+.+.. +|... ..-+....+..+-
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V-------------------------------i~kfLdaq~IknL 416 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV-------------------------------IKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH-------------------------------HHHhcCHHHHHHH
Confidence 457888999999999999999999999863 33211 1122333333344
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705 255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPY--RVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332 (557)
Q Consensus 255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (557)
..+++.+.+..-.+.+--..+-.||.++++.+.-.+..++ .+. ..-.....-.++...+-.+.+..++.+...
T Consensus 417 t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 417 TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 4445555444333444445555667777766554333322 221 111233344455555555555555544221
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHH
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 362 (557)
+.. .+-..+...++|++|+.++..
T Consensus 492 ---he~---vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 492 ---HEW---VLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred ---CHH---HHHHHHHHhcCHHHHHHHHhc
Confidence 111 233445567778888777654
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=87.42 E-value=11 Score=30.25 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 008705 252 KESLTKYEYLQG--TFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL 296 (557)
Q Consensus 252 ~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 296 (557)
.++.++|..+.. +....+..+...|..+...|++.+|..+|+.++
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 377888887765 466788889999999999999999999998764
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.96 E-value=1.6 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.494 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 008705 190 GNENLARTVFVESVNSYPWNWNAWSELKS 218 (557)
Q Consensus 190 g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 218 (557)
|+.+.|..+|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56889999999999999999999987743
No 395
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.30 E-value=30 Score=32.65 Aligned_cols=34 Identities=9% Similarity=-0.063 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 008705 249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL 282 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 282 (557)
+-.++|+..-.-+..+.|..++++-..+.+.++.
T Consensus 210 ~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~ 243 (415)
T COG4941 210 DLCDEAIRLGRLLARLLPGEPEALGLLALMLLQE 243 (415)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3457888888888889999999888777776543
No 396
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.08 E-value=27 Score=31.98 Aligned_cols=78 Identities=10% Similarity=0.064 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcC
Q 008705 388 PAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLH 455 (557)
Q Consensus 388 ~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~ 455 (557)
...++.+.+|....... ......+|..|...|++++|+.+|+.+....... ..+...+..|+.. .|
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~--~~ 232 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR--LG 232 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH--hC
Confidence 34455555555533211 3344578888888888888888888886543322 3455667777777 88
Q ss_pred cHHHHHHHHHHH
Q 008705 456 MLEEAIKCYRRA 467 (557)
Q Consensus 456 ~~~~A~~~~~~a 467 (557)
+.++.+.+.-+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 887777665444
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.34 E-value=1.5 Score=27.57 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 519 LIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 519 ~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
.+.||..|..+|+.+.|.+.++.++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367999999999999999999999964
No 398
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=30 Score=31.80 Aligned_cols=279 Identities=15% Similarity=0.057 Sum_probs=146.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008705 180 YLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYE 259 (557)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 259 (557)
..++.-..+.+++++|+..|.+.+.....-.+... .+.-.....++.+|...|++..--+...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~-----------------nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL-----------------NEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh-----------------hHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 45677778899999999999999976433222111 0111122335777777777665433333
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh--HHHHHHHHHHhhCCCCh
Q 008705 260 YLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS--ALSYLAHRVFMTDKYRP 337 (557)
Q Consensus 260 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 337 (557)
... +++... --.+..++.+..++..|..++.+.....++...=.+. +-..++ +.
T Consensus 70 ~sr-------e~m~~f--------tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL---------r~ 125 (421)
T COG5159 70 SSR-------EAMEDF--------TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL---------RL 125 (421)
T ss_pred hhH-------HHHHHh--------cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 221 111111 0112234555556666655544433222211110000 000111 12
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----CCCChH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKL------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----NPRDYR 406 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~ 406 (557)
+.-+.+...++..|+|.+|+......+.. .+.-..++..-..+|.+..+..++...+..|-.. .|....
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlq 205 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQ 205 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHH
Confidence 34456788889999999998877665432 2445567777788888888888887777665442 232222
Q ss_pred HH--HHHHHHHHHhCChHHHHHHHHHHHhcCC---CCHHHHH-----HHHHHHhHHhcCcHHHHHHHHH--HHHh-cCCC
Q 008705 407 AW--YGLGQAYEMMHMPLYALHYFRKSVFLQP---NDSRLWI-----AMAQCYETEQLHMLEEAIKCYR--RAAN-CNDS 473 (557)
Q Consensus 407 ~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~-----~l~~~~~~~~~~~~~~A~~~~~--~al~-~~p~ 473 (557)
+. ..-|.....-.+|..|-.+|-++++-.. .+..+.. .+..+. .+..++-...+. ..++ .+..
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM----lN~~~evk~vl~~K~t~~~y~~r 281 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM----LNRREEVKAVLRNKNTLKHYDDR 281 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH----HhhHHHHHHHHccchhHhhhhhh
Confidence 22 2234555667788889888888876432 2333322 222222 333343333322 1222 2334
Q ss_pred hHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 008705 474 EAIALNQLAKLHHA--LGRDEEAAFYYKKDLE 503 (557)
Q Consensus 474 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 503 (557)
...++...+..+.. +.+|..|+.-|..-+.
T Consensus 282 ~I~am~avaea~~NRsL~df~~aL~qY~~el~ 313 (421)
T COG5159 282 MIRAMLAVAEAFGNRSLKDFSDALAQYSDELH 313 (421)
T ss_pred hHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhc
Confidence 45566666666543 3466666666665544
No 399
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.24 E-value=44 Score=33.59 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 398 (557)
..-...++.+++.... +.-++..++.+|... ..++-...+++.++.+-++...-..++..|.. ++.+.+..+|.+++
T Consensus 82 ~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 82 NQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 3334444444444332 334455555555555 34445555555555555554444445444433 55556666666655
Q ss_pred h
Q 008705 399 D 399 (557)
Q Consensus 399 ~ 399 (557)
.
T Consensus 159 y 159 (711)
T COG1747 159 Y 159 (711)
T ss_pred H
Confidence 4
No 400
>PF12854 PPR_1: PPR repeat
Probab=84.76 E-value=2.3 Score=24.86 Aligned_cols=30 Identities=17% Similarity=-0.057 Sum_probs=26.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVES 202 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 202 (557)
+.|...|..+-..+.+.|+.++|+++|++.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 567788999999999999999999999874
No 401
>PF13041 PPR_2: PPR repeat family
Probab=84.22 E-value=2.1 Score=27.64 Aligned_cols=40 Identities=18% Similarity=0.015 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705 515 MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHL 554 (557)
Q Consensus 515 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~ 554 (557)
+...|..+-..+.+.|++++|.+.|++..+..-..+...+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty 41 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY 41 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3457888899999999999999999999987655444443
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.13 E-value=20 Score=35.27 Aligned_cols=61 Identities=16% Similarity=0.028 Sum_probs=42.7
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhh-CCCC-hHHHHHHHHH--HHHhCChHHHHHHHHHHHhc
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDI-NPRD-YRAWYGLGQA--YEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~-~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~~ 434 (557)
....+..++..++|..|...+...... .+.. ...+..+... +...-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667778899999999999998885 3322 2344444444 45567888999999887764
No 403
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=83.80 E-value=3 Score=23.54 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 421 PLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 421 ~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
++.|...|++++...|.++.+|...+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 44444455555554454444444443
No 404
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.68 E-value=8.3 Score=27.49 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (557)
.+...|.-+-+.|++.+|+.+|+++++.+.......|+.+.-..
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 34455556677889999999999988877666666677665433
No 405
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=41 Score=31.84 Aligned_cols=172 Identities=16% Similarity=0.100 Sum_probs=93.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCc
Q 008705 273 AQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQ 352 (557)
Q Consensus 273 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 352 (557)
..+...|+..++|.+|+.....+++.-..-. -.+.-.+++..-...|+...+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlD----------------------------DK~lLvev~llESK~y~~l~N 183 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLD----------------------------DKILLVEVHLLESKAYHALRN 183 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----------------------------cccceeeehhhhhHHHHHHhc
Confidence 5677888889999999888777664211100 001122344444555566666
Q ss_pred hHHHHHHHHHHHhcC-----cCCHHH--HHHHhHHHHhcCCchHHHHHHHHHHhhCC---CChHH---HHHHHHHHHHhC
Q 008705 353 HEKSVVYFRRALKLD-----KNYLSA--WTLMGHEYVEMKNTPAAIDAYRRAVDINP---RDYRA---WYGLGQAYEMMH 419 (557)
Q Consensus 353 ~~~A~~~~~~al~~~-----p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~---~~~l~~~~~~~~ 419 (557)
..+|...+..|-... |....+ =..-|..+....+|..|..+|-++++-.. ++..+ +..+-.+-..++
T Consensus 184 l~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln 263 (411)
T KOG1463|consen 184 LPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN 263 (411)
T ss_pred chhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc
Confidence 666666555543321 111111 12234555556777777777777776321 12222 222233333445
Q ss_pred ChHH--HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC
Q 008705 420 MPLY--ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 472 (557)
Q Consensus 420 ~~~~--A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p 472 (557)
..++ ++-.-+.+++....+.++...++.++....+.+|+.|+..|..-+..+|
T Consensus 264 ~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 264 LPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred CHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 5544 3333344555566667777777777765335577777777777766554
No 406
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.87 E-value=51 Score=32.99 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=23.6
Q ss_pred ChhH-HHHHHHHHhhhCchHHHHHHHHHHHhc
Q 008705 336 RPES-CCIIGNYYSLKGQHEKSVVYFRRALKL 366 (557)
Q Consensus 336 ~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~ 366 (557)
.++. ...+|++++..|+|+.|...|+.+.+-
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~D 237 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKD 237 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4443 456889999999999999998877653
No 407
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=34 Score=32.18 Aligned_cols=124 Identities=12% Similarity=0.046 Sum_probs=81.6
Q ss_pred chhHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---HHHHHHHHHhhhcHHHHhhc
Q 008705 155 NRELISLERELSTSWKN--GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN---WNAWSELKSLCTSIDILNSL 229 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~l 229 (557)
+..++++.+.+++..++ ...-.+++..+|..|.+.|+.+.|.+.+.+..+..-.- .+...
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf--------------- 145 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVF--------------- 145 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHH---------------
Confidence 44566666666666554 23446789999999999999999999998876643211 11111
Q ss_pred CCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 008705 230 NLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300 (557)
Q Consensus 230 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 300 (557)
...-+|..|....-..+.++....+++...+ ........|.......+|.+|-.+|-..+....
T Consensus 146 -------~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 146 -------YKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred -------HHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 1122466666666666666666666665443 223456667777888899999999888876544
No 408
>PF13041 PPR_2: PPR repeat family
Probab=82.11 E-value=7 Score=25.11 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
...|..+-..+.+.|++++|.+.|++..+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45677788888888888888888888877
No 409
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.78 E-value=21 Score=31.55 Aligned_cols=72 Identities=6% Similarity=-0.029 Sum_probs=60.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
...+.+.+...+++...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|+.......+.+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 345677888999999999999999999998888999999999999999999999999998766555554443
No 410
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.35 E-value=1.1e+02 Score=34.49 Aligned_cols=108 Identities=18% Similarity=0.033 Sum_probs=55.0
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH---HHHHHHH
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW---IAMAQCY 449 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~---~~l~~~~ 449 (557)
.+...|..+.+.+.+++|.-.|+++=++. . --.+|...|++.+|+....+. .+.-.... ..|+.-+
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle----k----Al~a~~~~~dWr~~l~~a~ql---~~~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKLE----K----ALKAYKECGDWREALSLAAQL---SEGKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccHH----H----HHHHHHHhccHHHHHHHHHhh---cCCHHHHHHHHHHHHHHH
Confidence 34445555556666666655555442211 1 123444556666666655443 22222222 4555556
Q ss_pred hHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 450 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 450 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (557)
.. .+++-+|-+.....+. +|.... .+|.+...|++|+..-..
T Consensus 1010 ~e--~~kh~eAa~il~e~~s-d~~~av------~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VE--QRKHYEAAKILLEYLS-DPEEAV------ALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HH--cccchhHHHHHHHHhc-CHHHHH------HHHhhHhHHHHHHHHHHh
Confidence 66 7888888777776654 233222 223344456666655444
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.89 E-value=13 Score=32.78 Aligned_cols=59 Identities=24% Similarity=0.120 Sum_probs=39.1
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Q 008705 380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND 438 (557)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 438 (557)
.+++.+...+|+...+.-++.+|.+......+-+++...|++++|...++-+-.+.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34555666666666666666666666666666666666677777776666666666665
No 412
>PF12854 PPR_1: PPR repeat
Probab=79.68 E-value=5.3 Score=23.31 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhHHhcCcHHHHHHHHH
Q 008705 440 RLWIAMAQCYETEQLHMLEEAIKCYR 465 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~~~A~~~~~ 465 (557)
..|..+...+.+ .|+.++|.+.|+
T Consensus 8 ~ty~~lI~~~Ck--~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCK--AGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHH--CCCHHHHHHHHH
Confidence 344444444444 555555544444
No 413
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=3.7 Score=38.74 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=75.7
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
.++-.+..++++.|..-+.+++..-... ...+..+... +...+...-.....+++.+-...+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~------------s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQ------------SRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhccc------------cccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 5667778888888888888776532100 0000000000 011111122333444666777777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705 423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 484 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 484 (557)
.|+.....++..++....+++..+..+.. ..++++|++.++.+....|++..+...+..+
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~--~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKL--LKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHh--hhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 77777777777677777777777777777 7788888888888877777776655544444
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.13 E-value=1.1e+02 Score=33.75 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=47.9
Q ss_pred HhhhCchHHHHHHHHHHHhcCcC-CHHHHHHHhHHHHhc--------CCchHHHHH--HHHHHh-------hCCC-----
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKN-YLSAWTLMGHEYVEM--------KNTPAAIDA--YRRAVD-------INPR----- 403 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~--------~~~~~A~~~--~~~al~-------~~p~----- 403 (557)
|......+-++.+++.++..+.. ....+..+...|.+. ++-+++.+. .++... .+|.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~ 680 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER 680 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh
Confidence 45566777788888888776654 333444444444332 122333333 222221 1111
Q ss_pred --ChHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 008705 404 --DYRAWYGLGQAYEMMHMPLYALHYFRKSVF 433 (557)
Q Consensus 404 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 433 (557)
....|...+.++.++|+.++|+..|-..+.
T Consensus 681 ~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 681 LNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred ccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 144566677777788888888877766553
No 415
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.42 E-value=79 Score=31.90 Aligned_cols=98 Identities=12% Similarity=-0.002 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHH
Q 008705 266 SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGN 345 (557)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 345 (557)
|-+...+..+-.++-....+.-...++.+++....+ .-++..++.++... ..+.+-.+..++++.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 333344455555555555566666677777766543 34556666666665 5566667777777777777777778888
Q ss_pred HHhhhCchHHHHHHHHHHHhc
Q 008705 346 YYSLKGQHEKSVVYFRRALKL 366 (557)
Q Consensus 346 ~~~~~g~~~~A~~~~~~al~~ 366 (557)
.|.. ++-.++..+|.+++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 8877 8889999999998764
No 416
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=78.23 E-value=4.8 Score=37.99 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=66.7
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
...+++.+-+..+.+..|+.....++..++....+++..+..+....++++|+..+..+....|++..+...+..+-.
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 345577888889999999988888888888889999999999999999999999999999999999877666554443
No 417
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.13 E-value=18 Score=35.64 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 008705 241 LASAYQELRMHKESLTKYEYLQGT---------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLR 297 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 297 (557)
+..++.-+|+|..|++.++.+ ++ .+-....++..|-+|..+++|.+|+..|..++-
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999998865 22 222455689999999999999999999999875
No 418
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.19 E-value=80 Score=30.81 Aligned_cols=133 Identities=9% Similarity=0.038 Sum_probs=75.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhc----CCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCCCcHHHHH
Q 008705 242 ASAYQELRMHKESLTKYEYLQGT----FSF-----SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP--YRVDDMDMYS 310 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~ 310 (557)
...+....++.+|..+-+..+.. +.. ....|+.+..++...|+...-...+...+.... ++.+..
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~q---- 208 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQ---- 208 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhH----
Confidence 33445567888888777666542 111 133455666666666776655555555554322 111111
Q ss_pred HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc--CcC--CHHHHHHHhHHHHhcCC
Q 008705 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--DKN--YLSAWTLMGHEYVEMKN 386 (557)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~--~~~~~~~l~~~~~~~~~ 386 (557)
+...+.+-..|...+.|+.|-....+..-- ..+ .....+.+|.+..-+++
T Consensus 209 --------------------------avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld 262 (493)
T KOG2581|consen 209 --------------------------AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD 262 (493)
T ss_pred --------------------------HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc
Confidence 122334455566667777777766655411 111 22335567777777888
Q ss_pred chHHHHHHHHHHhhCCCC
Q 008705 387 TPAAIDAYRRAVDINPRD 404 (557)
Q Consensus 387 ~~~A~~~~~~al~~~p~~ 404 (557)
|..|.+++-.|+...|.+
T Consensus 263 YssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 263 YSSALEYFLQALRKAPQH 280 (493)
T ss_pred hhHHHHHHHHHHHhCcch
Confidence 888888888888887764
No 419
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=50 Score=30.39 Aligned_cols=167 Identities=13% Similarity=0.150 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cC----CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--CChHHH
Q 008705 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVE----MK----NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM--HMPLYA 424 (557)
Q Consensus 355 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~A 424 (557)
.|++.-...+..+|....+|...-.+... .. -.+.-+..+..+++.+|++..+|...-.++... ..+..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence 45555555555666665565544333322 11 234556778888889999999998887777655 567777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH---hHHhcCcHHHH---HHHHHHHHhcCCChHHHHHHH---HHHHHHcCCHHHHH
Q 008705 425 LHYFRKSVFLQPNDSRLWIAMAQCY---ETEQLHMLEEA---IKCYRRAANCNDSEAIALNQL---AKLHHALGRDEEAA 495 (557)
Q Consensus 425 ~~~~~~a~~~~p~~~~~~~~l~~~~---~~~~~~~~~~A---~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~ 495 (557)
+...++.++.++.+--+|...-.++ .. .+++..+ .++-..++..++.+..+|... -......|++-.=.
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~--~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk 207 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIED--LFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQK 207 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchh--hccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHH
Confidence 7888888888888877665544433 11 2333333 444445666788888877766 33333445443221
Q ss_pred HHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 008705 496 FYYKKDLERMEAEEREGPNMVEALIFLAT 524 (557)
Q Consensus 496 ~~~~~al~~~~~~~~~~~~~~~~~~~la~ 524 (557)
++++-++.+....-.+|++..+|..+-.
T Consensus 208 -~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 208 -YLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred -HHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 4555555444444467877777765443
No 420
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=75.71 E-value=91 Score=31.22 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERM 505 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (557)
..-|.-|.+.|+...|..+|..++...
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 344667778888888888888887743
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.43 E-value=90 Score=30.51 Aligned_cols=125 Identities=9% Similarity=-0.048 Sum_probs=74.1
Q ss_pred hhhCchHHHHHHHHHHHhc----CcC-----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----CCC-ChHHHHHHH
Q 008705 348 SLKGQHEKSVVYFRRALKL----DKN-----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----NPR-DYRAWYGLG 412 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~----~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~l~ 412 (557)
....++.+|..+-+..+.. +.. ....|+.+..+|...|+...-...+...+.. +.. .....+.|-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 3456777777665554432 111 1234666666666677655544444433331 111 133445566
Q ss_pred HHHHHhCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 413 QAYEMMHMPLYALHYFRKSVFL----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
..|...+.|+.|-....+..-- +...++.++.+|.+..- +++|..|.++|-+|+...|.+
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai--qldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI--QLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh--hcchhHHHHHHHHHHHhCcch
Confidence 6777778888887777665421 11224566777888877 888888888888888888864
No 422
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.60 E-value=57 Score=33.54 Aligned_cols=102 Identities=15% Similarity=-0.028 Sum_probs=63.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705 243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL 322 (557)
Q Consensus 243 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 322 (557)
.+..+.|+++.|.++..++ ++..-|.++|.+....+++..|.++|.++..... +-.++...|+.+.+
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~--------LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGS--------LLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhh--------hhhhhhhcCChhHH
Confidence 3456788888888876665 4566789999999999999999999998854321 22223334444444
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHH
Q 008705 323 SYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362 (557)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 362 (557)
..+...+......+. --.+|...|+++++++.+.+
T Consensus 712 ~~la~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGKNNL-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcccch-----HHHHHHHcCCHHHHHHHHHh
Confidence 444444333333222 12345566777776666544
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.40 E-value=69 Score=31.62 Aligned_cols=61 Identities=5% Similarity=-0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHH--HHHH--HhHHHHhcCCchHHHHHHHHHHhh
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS--AWTL--MGHEYVEMKNTPAAIDAYRRAVDI 400 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~--l~~~~~~~~~~~~A~~~~~~al~~ 400 (557)
....+...+..++|..|...|......-|.... .+.. .|..+...-++++|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667778999999999999999885333333 3333 344556778899999999998765
No 424
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.24 E-value=7.2 Score=21.58 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHH
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRAL 364 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al 364 (557)
|..+-..|.+.|++++|...|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3445555566666666666665544
No 425
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=70.90 E-value=7 Score=21.64 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 518 ALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 518 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
.|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3667888999999999999999998764
No 426
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.14 E-value=3.2e+02 Score=35.13 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH---hcC---cHHHHHHHHHHHHhcCCChHHHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE---QLH---MLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---~~~---~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
++.+...|....++|+.++|-..|..|++++..-+.+|..-|...... ..+ --..|+.||-+|.... ++..+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhhH
Confidence 556777899999999999999999999999888888888888765430 011 1245777777776653 223344
Q ss_pred HHHHHHHHHc
Q 008705 479 NQLAKLHHAL 488 (557)
Q Consensus 479 ~~la~~~~~~ 488 (557)
-.++.+++-+
T Consensus 2891 k~iakvLwLl 2900 (3550)
T KOG0889|consen 2891 KLIAKVLWLL 2900 (3550)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 427
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=1.1e+02 Score=29.24 Aligned_cols=278 Identities=14% Similarity=0.043 Sum_probs=158.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcc--CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705 180 YLYGIVLKDKGNENLARTVFVESVNS--YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK 257 (557)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~ 257 (557)
+..+......+++++++..|..++.. .|.+.+.-.... -.....++..+...|+..+-...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~k-----------------E~~Ilel~~ll~~~~~~~~lr~l 70 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEK-----------------EQSILELGDLLAKEGDAEELRDL 70 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHH-----------------HHHHHHHHHHHHhccchhHHHHH
Confidence 45556666777889999999998874 344333222110 01123458888888887766555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH----HHHH-HHhccchhHHHHHHHHHHhh
Q 008705 258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM----YSNV-LYAKECFSALSYLAHRVFMT 332 (557)
Q Consensus 258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~ 332 (557)
....-. .+...+ -.++.++.+.+++..+.-.+.... .-.+ -+..... ..++
T Consensus 71 i~~~Rp-------f~~~v~--------KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek---RtFL------ 126 (411)
T KOG1463|consen 71 ITSLRP-------FLSSVS--------KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK---RTFL------ 126 (411)
T ss_pred HHHHHH-------HHHHhh--------hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh---HHHH------
Confidence 554422 111111 122334444444443332222211 1111 0111100 1111
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc----C--cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----C
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL----D--KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----N 401 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~ 401 (557)
+...-..+...|...++|.+|+......+.. + +.-.+++..-...|....+..+|...+..|-.. .
T Consensus 127 ---Rq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc 203 (411)
T KOG1463|consen 127 ---RQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC 203 (411)
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc
Confidence 1233456888999999999999887766542 2 223456777788899999999998888776542 1
Q ss_pred CCChH--HHHHHHHHHHHhCChHHHHHHHHHHHhcCC---CCHHH---HHHHHHHHhHHhcCcHHHHHHH--HHHHHhcC
Q 008705 402 PRDYR--AWYGLGQAYEMMHMPLYALHYFRKSVFLQP---NDSRL---WIAMAQCYETEQLHMLEEAIKC--YRRAANCN 471 (557)
Q Consensus 402 p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~---~~~l~~~~~~~~~~~~~~A~~~--~~~al~~~ 471 (557)
|.... .-..-|..+....+|..|..+|=++++-.. ++..+ +-.+-.|-.. .+..++--.. -+.+++..
T Consensus 204 pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIM--ln~~ddv~~lls~K~~l~y~ 281 (411)
T KOG1463|consen 204 PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIM--LNLPDDVAALLSAKLALKYA 281 (411)
T ss_pred CHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHH--hcCHHHHHHHHhhHHHHhcc
Confidence 21111 122335666667899999999999987542 22333 3333344444 5666654443 34566666
Q ss_pred CChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 008705 472 DSEAIALNQLAKLHHAL--GRDEEAAFYYKKDLE 503 (557)
Q Consensus 472 p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~ 503 (557)
..+..++...|..+.+. .+|+.|+.-|+.-+.
T Consensus 282 g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 282 GRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred CcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 77788888888887653 467777777776655
No 428
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.89 E-value=99 Score=28.70 Aligned_cols=107 Identities=8% Similarity=-0.061 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES 254 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A 254 (557)
-.+++-.+|..|.+.++.+.+.++..+.++..-...- .-+-+....-+|.+|....-..+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~-------------------KiDv~l~kiRlg~~y~d~~vV~e~ 174 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL-------------------KIDVFLCKIRLGLIYGDRKVVEES 174 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-------------------chhhHHHHHHHHHhhccHHHHHHH
Confidence 4678999999999999999999999888764321100 001111223347777777777777
Q ss_pred HHHHHHHHhcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 008705 255 LTKYEYLQGTFSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300 (557)
Q Consensus 255 ~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 300 (557)
++..+.+++...+ ........|.......+|.+|-.++..++....
T Consensus 175 lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 175 LEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7777777776544 223445667777778888888888877776543
No 429
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.63 E-value=51 Score=30.96 Aligned_cols=57 Identities=25% Similarity=0.107 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCC----C----HHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQPN----D----SRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
...|+.+|.+.++|..|-..+.- +.++.. + ...+..+|.+|.. .++..+|..+..++
T Consensus 106 rl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe--~~d~veae~~inRa 170 (399)
T KOG1497|consen 106 RLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLE--DDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 44556666666666655544421 222110 0 1133445555555 55555555555444
No 430
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.57 E-value=9.2 Score=27.30 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=10.0
Q ss_pred hcCCchHHHHHHHHHHh
Q 008705 383 EMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~ 399 (557)
..|++++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34566666666666554
No 431
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=67.91 E-value=60 Score=31.62 Aligned_cols=82 Identities=16% Similarity=0.038 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHhhhcC------CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCCh
Q 008705 103 CREYRRAAHVLRDQTG------RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDP 176 (557)
Q Consensus 103 ~~~y~~A~~~l~~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 176 (557)
.|=..+|-++|+...+ .++.|...|+.-|+.=..-...... -.+...+..-+..+...++.-....|.+.
T Consensus 73 nGiIHECDRLLR~~e~~~~~~~Lp~~FhaIYalALsELa~f~~~~~~----~~~~~~v~efFdaAlER~e~Gl~~~p~s~ 148 (404)
T PF12753_consen 73 NGIIHECDRLLRNSEEEEKKKELPDRFHAIYALALSELAIFKAEEEE----EKKREKVSEFFDAALERVELGLEKFPDSI 148 (404)
T ss_dssp HHHHHHHHHHHHHSS-GG---GS-HHHHHHHHHHHHHHHHTHHHHGG----GS-TT--HHHHHHHHHHHHHGGSSS--H-
T ss_pred ccchHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHhhcchhh----hhhhhhHHHHHHHHHHHHHhhhhcCCCch
Confidence 3447788888887642 3456766676655531100011000 11122345567778888888788889988
Q ss_pred hHHHHHHHHHHh
Q 008705 177 FGLYLYGIVLKD 188 (557)
Q Consensus 177 ~~~~~~g~~~~~ 188 (557)
.+.+..+.++++
T Consensus 149 ~L~l~~skIll~ 160 (404)
T PF12753_consen 149 LLLLAKSKILLQ 160 (404)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 888887777654
No 432
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=67.85 E-value=65 Score=26.19 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=61.0
Q ss_pred HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHH
Q 008705 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYAL 425 (557)
Q Consensus 346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 425 (557)
.+...+.....+.+++..+..++.+...+..+..+|.+.+ ..+.++.++. .++.... -..+.++...+-++++.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~-~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDI-EKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCH-HHHHHHHHHcCcHHHHH
Confidence 3444567777888888877777666677777777776543 3445555542 1111111 12333444455555555
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
..+.+.- .... ...++.. ..++++.|++++.+ +.++..|..++..+.
T Consensus 90 ~l~~k~~----~~~~----Al~~~l~-~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 90 ELYKKDG----NFKD----AIVTLIE-HLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHhhc----CHHH----HHHHHHH-cccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 5554421 1111 1111111 03566666666664 234555655554443
No 433
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.29 E-value=41 Score=32.72 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC---CHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN---YLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
.++..+|..|...|+.+.|++.|-++-..... ....|.++..+-..+|+|..-..+-.++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45667788888888888888888875544322 234466666667777777777766666654
No 434
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=66.70 E-value=29 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
..+||..+..+|+.+..++|++-|-
T Consensus 53 CHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 53 CHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HhhHHHHHHHcCChHHHHHHHHHHH
Confidence 4567777777888877777776543
No 435
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=66.69 E-value=1e+02 Score=28.09 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhc-CC--CCHHHHHHHHHHHHh-cccHHHHHHHHHHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGT-FS--FSNYIQAQIAKAQYS-LREFEQVEVIFEEL 295 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~~ 295 (557)
.++|.+..+.++|++.+....++++. .| -+.+-...+..+|-. .|....+...+..+
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 45688888899999999999998876 43 355666666666644 46666777776654
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.25 E-value=2e+02 Score=30.78 Aligned_cols=102 Identities=12% Similarity=0.187 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------cHHHHHHHHHh---ccchhHHHHHHHHHHh-hCCCCh
Q 008705 268 SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD------DMDMYSNVLYA---KECFSALSYLAHRVFM-TDKYRP 337 (557)
Q Consensus 268 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~ 337 (557)
.+++...+-..|....+|+.-+.+.+.+-++ |+..+ ....++-.+.. .|+.+++....-.+++ ..+..|
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 5666677777777888888777776655443 32111 11122222222 2444444444333333 345567
Q ss_pred hHHHHHHHHHhh---------hCchHHHHHHHHHHHhcCcCC
Q 008705 338 ESCCIIGNYYSL---------KGQHEKSVVYFRRALKLDKNY 370 (557)
Q Consensus 338 ~~~~~la~~~~~---------~g~~~~A~~~~~~al~~~p~~ 370 (557)
+.+|..|++|.. .+..+.|++.|+++++..|..
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 777777777643 344566777777777777653
No 437
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=64.42 E-value=74 Score=28.65 Aligned_cols=36 Identities=6% Similarity=-0.077 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHhccCCCchh
Q 008705 516 VEALIFLATHCR---------AHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 516 ~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
+..+...|..+. ..++...|..+++++++++|.--+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 445555677663 456889999999999999876443
No 438
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.27 E-value=18 Score=20.45 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 518 ALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 518 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
.|..+-..|.+.|++++|.+.|.+..+.+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 35667888999999999999999987653
No 439
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.23 E-value=27 Score=28.66 Aligned_cols=43 Identities=14% Similarity=-0.184 Sum_probs=24.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhccc
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLRE 284 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 284 (557)
+...+..|++.-|.++.+.++..+|++..+...++.++..+|.
T Consensus 77 A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 77 AQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666666666666666555543
No 440
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=63.07 E-value=1.4e+02 Score=28.33 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC------CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN------YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YR 406 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 406 (557)
-.+++...|.+|.+.|+-+.|.+.+++..+..-. -.-....+|..|....-..+.++..+..++...+- -+
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 4578889999999999999999998887654321 12234456777766655555555555555544321 12
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcC
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQ 435 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 435 (557)
.-..-|.......+|.+|-..|-.++...
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 22334555666788899988888877654
No 441
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=62.84 E-value=17 Score=20.59 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=9.9
Q ss_pred HHHHHHHHhCChHHHHHHHHHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKS 431 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a 431 (557)
.+-..|.+.|++++|...|.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 442
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.83 E-value=53 Score=33.79 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
.+.|+++.|..+..++ ++..-|-.||.+... .+++..|.+||.++..
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~--~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS--AGELPLASECFLRARD 694 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh--cccchhHHHHHHhhcc
Confidence 4556666665544432 344556666666666 6666677776666644
No 443
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.53 E-value=90 Score=33.11 Aligned_cols=59 Identities=5% Similarity=0.011 Sum_probs=42.9
Q ss_pred HhhhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHhCCCCCCcH
Q 008705 248 LRMHKESLTKYEYLQGT-FSFSNYIQAQIAKAQYS---------LREFEQVEVIFEELLRNDPYRVDDM 306 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~ 306 (557)
-|+-.+|+...-.+++. .|-.++.+..-|++|-. .+..+.|+.+|+++.+..|......
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGI 324 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGI 324 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccc
Confidence 46677888888777765 34466667777777643 4667899999999999999754443
No 444
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.04 E-value=1.4e+02 Score=27.86 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---hHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAI---ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512 (557)
Q Consensus 439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (557)
..+|.++|..|.+ .++.+.+.+.+.+.+...-. ..+ .-..+|.+|..+.-.++.++..+..++ + ++..
T Consensus 115 ~ea~~n~aeyY~q--i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE---k-GgDW 188 (412)
T COG5187 115 SEADRNIAEYYCQ--IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE---K-GGDW 188 (412)
T ss_pred HHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH---h-CCCH
Confidence 3456666666666 66666666655554432211 111 223344444433333333333333333 1 1111
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
...-......|.......+|.+|...+-.++..
T Consensus 189 eRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 189 ERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 111122223344444555666666666555543
No 445
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=62.03 E-value=15 Score=26.54 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=9.7
Q ss_pred hcCCchHHHHHHHHHHh
Q 008705 383 EMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~ 399 (557)
+.|+.++|+.+|++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 33556666666666554
No 446
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=61.46 E-value=87 Score=25.39 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=30.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
++..+|+-++-.+.+....+ .....|..+..+|..|.+.|+..+|.+.+.+|.+..
T Consensus 95 ~lv~~~kkDqLdki~~~l~k-------n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKK-------NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhh-------ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34455555555555555443 344566677777777777777777777777776654
No 447
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.44 E-value=2.9e+02 Score=31.37 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=80.8
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST 167 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 167 (557)
.--++++|.+|..+|+-.+|++.|..+.+ ....|++-..+.+.- ++ ..+.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p-~~---------~sv~------------------ 971 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLP-KR---------FSVA------------------ 971 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcC-CC---------Cchh------------------
Confidence 35678889999999999999999998876 333455554333221 00 0000
Q ss_pred hhcCCCCCh---hHHHHHH-HHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHH
Q 008705 168 SWKNGTVDP---FGLYLYG-IVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLAS 243 (557)
Q Consensus 168 ~~~~~~~~~---~~~~~~g-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~ 243 (557)
....|..+ .-||+.. +++.+.+-.+++++.-.+||+.-|..+.....+.. .+=.
T Consensus 972 -dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t---------------------~vFn 1029 (1480)
T KOG4521|consen 972 -DGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALIST---------------------TVFN 1029 (1480)
T ss_pred -cCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHH---------------------HHHH
Confidence 00111112 2234443 44556777888999999999887776643322211 1123
Q ss_pred HHHHHhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcccHH
Q 008705 244 AYQELRMHKESLTKYEYLQGTFSFS---NYIQAQIAKAQYSLREFE 286 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~ 286 (557)
-...+|.+.+|...+- .+|+. ...+.++-.+++..|.++
T Consensus 1030 hhldlgh~~qAy~ai~----~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1030 HHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred hhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhccchH
Confidence 3455666666665433 34442 235566667777776654
No 448
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.32 E-value=39 Score=24.15 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHhcCCCCHH
Q 008705 251 HKESLTKYEYLQGTFSFSNY 270 (557)
Q Consensus 251 ~~~A~~~~~~~l~~~p~~~~ 270 (557)
|.+|++.+.+++...|+++.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhCCChHH
Confidence 44444444455555666554
No 449
>PRK12798 chemotaxis protein; Reviewed
Probab=60.75 E-value=1.8e+02 Score=28.78 Aligned_cols=106 Identities=11% Similarity=-0.022 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcc-CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNS-YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
+...-...|...+-.|+-.+|.+.+..+-.. .|....++..| ..-..+...+..+
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laL------------------------v~a~l~~~~dP~~ 166 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLAL------------------------VQGNLMVATDPAT 166 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHH------------------------HHHHHhcccCHHH
Confidence 4555666777778888888888887765432 23333333333 1223445567888
Q ss_pred HHHHHHHHHhcCCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Q 008705 254 SLTKYEYLQGTFSFSN---YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD 304 (557)
Q Consensus 254 A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 304 (557)
|+..|+.+-=..|... .++..-..+....|+.+++..+-.+.+....+.+-
T Consensus 167 Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~Y 220 (421)
T PRK12798 167 ALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPY 220 (421)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCch
Confidence 9999998877777642 23333344456788888888888888877666543
No 450
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=60.60 E-value=1.6e+02 Score=28.22 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=54.9
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHH
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A 460 (557)
+..+|+...|.+.-.+ .++ .+-..|.....++...++|++-..+.. . ...|-.|.-...++.. .|+..+|
T Consensus 187 li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~-s----kKsPIGyepFv~~~~~--~~~~~eA 256 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAK-S----KKSPIGYEPFVEACLK--YGNKKEA 256 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHh-C----CCCCCChHHHHHHHHH--CCCHHHH
Confidence 3455665555544222 232 245666667777777777765544332 1 2234445555566666 7777777
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705 461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 497 (557)
Q Consensus 461 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 497 (557)
..+..++ +. ......|.+.|++.+|.+.
T Consensus 257 ~~yI~k~----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 257 SKYIPKI----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHhC----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 7776661 11 3345566777777777654
No 451
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=60.38 E-value=1.8e+02 Score=28.59 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=39.6
Q ss_pred CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705 386 NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431 (557)
Q Consensus 386 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 431 (557)
..-+|+..++.++..+|.++.....+..+|..+|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3557888889999999999999999999999999999999988653
No 452
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.44 E-value=33 Score=28.17 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=25.4
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 419 (557)
.....+...+..|++.-|.++...++..+|++..+...++.++..+|
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666666666655555555443
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.54 E-value=1.9e+02 Score=28.42 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhhhcCCc
Q 008705 440 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAIALNQLAKLHHALGRDEEAAFYYKKDLERM---EAEEREGP 513 (557)
Q Consensus 440 ~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~ 513 (557)
.++..+|.-|.. .|+.+.|+++|-++-....+ ....+.++-.+-...|+|..-..+-.++.... .......|
T Consensus 151 ra~~Dl~dhy~~--cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLD--CGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHH--hccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 356667777777 77777777777775443222 23355666666666777776666666665521 00000112
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 514 NMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 514 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
. .+...-|...+..++|..|..+|-.+.
T Consensus 229 ~--kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 A--KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 233444555566668888888876553
No 454
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=58.22 E-value=43 Score=24.27 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=15.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHhh
Q 008705 487 ALGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~ 508 (557)
..|+.++|+.+|++++..+...
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHH
Confidence 3477777777777777765543
No 455
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=58.18 E-value=1e+02 Score=25.06 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc
Q 008705 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL 366 (557)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 366 (557)
.++..+++.+++..+...+......+|+....+|.+|.+.|+..++-+.+++|-+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34556677777777777777767778888888888888888888888888888764
No 456
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.61 E-value=1.4e+02 Score=27.70 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=13.1
Q ss_pred hHHHHhcCCchHHHHHHHHHHhh
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDI 400 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~ 400 (557)
+...+-..+|..|++.++++++.
T Consensus 42 ad~LvV~rdF~aal~tCerglqs 64 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQS 64 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666666553
No 457
>PRK12798 chemotaxis protein; Reviewed
Probab=57.56 E-value=2e+02 Score=28.42 Aligned_cols=193 Identities=11% Similarity=-0.021 Sum_probs=90.8
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHh-HHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMG-HEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEM 417 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 417 (557)
-|-.-+..|+-.++.+.+...-... |.....+..+. -..+...+..+|++.|..+--..|.. .-++..-..+...
T Consensus 118 ~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~ 197 (421)
T PRK12798 118 DGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQ 197 (421)
T ss_pred HHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHh
Confidence 3444445666666666554432111 11222222222 22334456666777776666666654 1122222333455
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHhHHhcCcHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHcCCHH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRL---WIAMAQCYETEQLHMLEEAIKCYRRAANC-NDS-EAIALNQLAKLHHALGRDE 492 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~la~~~~~~g~~~ 492 (557)
.|+.+++..+-.+.+.....++.+ +..+...+.. .++-.. ...+...+.. +|. ...+|..++..-...|+.+
T Consensus 198 ~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~--~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~ 274 (421)
T PRK12798 198 LGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVR--LDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGKTE 274 (421)
T ss_pred cCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHh--cccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHH
Confidence 666666666666666555444332 2223333333 221111 1223333333 222 2446666677767777777
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 493 EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 493 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
-|...-++++.... ....+...+.++-+-...-..+.++|.+.+..
T Consensus 275 lA~~As~~A~~L~~---~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 275 LARFASERALKLAD---PDSADAARARLYRGAALVASDDAESALEELSQ 320 (421)
T ss_pred HHHHHHHHHHHhcc---CCCcchHHHHHHHHHHccCcccHHHHHHHHhc
Confidence 77776666666321 12233344444444444444455555554443
No 458
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.50 E-value=2.1e+02 Score=28.17 Aligned_cols=54 Identities=17% Similarity=0.029 Sum_probs=35.5
Q ss_pred HhHHHHhcCCchHHHHHHHHHHhhCCC-----ChHHHHHHHHHH--HHhCChHHHHHHHHH
Q 008705 377 MGHEYVEMKNTPAAIDAYRRAVDINPR-----DYRAWYGLGQAY--EMMHMPLYALHYFRK 430 (557)
Q Consensus 377 l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~--~~~~~~~~A~~~~~~ 430 (557)
.+..++..++|..|...|..+....+. ....+..+..+| ...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 445677888888888888888876432 133444454444 445667788888875
No 459
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=56.32 E-value=2.1e+02 Score=28.15 Aligned_cols=54 Identities=11% Similarity=-0.093 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCC-----HHHH--HHHHHHHHhcccHHHHHHHHHH
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFS-----NYIQ--AQIAKAQYSLREFEQVEVIFEE 294 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~--~~la~~~~~~g~~~~A~~~~~~ 294 (557)
.+..++..++|..|...|+.+....+.. ...+ ...|..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4667889999999999999998875421 1223 3445556778899999999986
No 460
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.27 E-value=21 Score=25.57 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=8.8
Q ss_pred cCcHHHHHHHHHHHHh
Q 008705 454 LHMLEEAIKCYRRAAN 469 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~ 469 (557)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4555555555555544
No 461
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=55.62 E-value=1.1e+02 Score=24.79 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=33.8
Q ss_pred HHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 008705 244 AYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFE 293 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 293 (557)
.+...+.....+.+++.++..++.++.....+..++... +..+.+..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344556788888888888888777777788887777654 3344444444
No 462
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=55.46 E-value=35 Score=19.21 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677778888888888888877665
No 463
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=52.81 E-value=16 Score=32.83 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=17.9
Q ss_pred HHHhhhCchHHHHHHHHHHHhcC
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLD 367 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~ 367 (557)
.-.+..|+++.|+.....+++.+
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcC
Confidence 33456788889988888888875
No 464
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.51 E-value=2.2e+02 Score=27.28 Aligned_cols=35 Identities=6% Similarity=-0.058 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 514 NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 514 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
.++.+-+.-+..+.-.|++.++..++..++-+.|+
T Consensus 211 ~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 211 LNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred chHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 45566666677777777888888888888777655
No 465
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.98 E-value=53 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
+..+..++.++...|+.++|....+++..+.|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444
No 466
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.25 E-value=76 Score=31.25 Aligned_cols=108 Identities=14% Similarity=0.032 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh-----
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH----- 251 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~----- 251 (557)
..++..|+++.....|.+|+.++-.|=+.+...-+-+.... +. ..+...-+..||+.+.+.
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~V------DN--------yallnLDIVWCYfrLknitcL~D 229 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELV------DN--------YALLNLDIVWCYFRLKNITCLPD 229 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhh------cc--------hhhhhcchhheehhhcccccCCh
Confidence 45677888889999999999988877554433222221111 00 001111123333333221
Q ss_pred -----HHHHHH--------HHHHHhc-CCCCH------HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 008705 252 -----KESLTK--------YEYLQGT-FSFSN------YIQAQIAKAQYSLREFEQVEVIFEELLRN 298 (557)
Q Consensus 252 -----~~A~~~--------~~~~l~~-~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 298 (557)
..|.+. +.++..+ .+..+ ..+...|.+.+++|+-++|.+.++.+...
T Consensus 230 Ae~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 230 AEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 122222 2222222 22222 23466788999999999999999988653
No 467
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=50.95 E-value=31 Score=19.77 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHhccC
Q 008705 517 EALIFLATHCRAH----GRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 517 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 546 (557)
.+.+.+|.+|..- .+..+|..+|+++.+..
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 4567788887643 38999999999987653
No 468
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.75 E-value=19 Score=34.87 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC------------HHHHHHHHHHHhccCCCchhhhhh
Q 008705 491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR------------FEEAEVYCTRLLDYTGPVSFTHLK 555 (557)
Q Consensus 491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~a~~ 555 (557)
...|+.+++++.. .+.|+.|..+|.++..+|| |.+|...+.+|-.....-....+.
T Consensus 334 ~~~Al~yL~kA~d---------~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLd 401 (404)
T PF12753_consen 334 IKKALEYLKKAQD---------EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILD 401 (404)
T ss_dssp HHHHHHHHHHHHH---------S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHHHhhc---------cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 3456666666665 4556677777777776665 667888888877665444444433
No 469
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.63 E-value=1.4e+02 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
|..+|-.+++.+++.+|+..+-.+-.
T Consensus 321 Yty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 321 YTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 470
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=2.3e+02 Score=26.90 Aligned_cols=179 Identities=14% Similarity=0.050 Sum_probs=98.8
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHH--HHhcCc--CCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR--ALKLDK--NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
..+..-....|...++.+..+...+..|+|..|-.++-. ++-.+| ++..+....-..-.-+.+++.|++.+.+.-+
T Consensus 116 ~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 116 QHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444455667778899999999999999999876543 333333 3344433333334456789999988877655
Q ss_pred h-CCCC---------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHhHHhc-CcHHHH
Q 008705 400 I-NPRD---------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--------NDSRLWIAMAQCYETEQL-HMLEEA 460 (557)
Q Consensus 400 ~-~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~l~~~~~~~~~-~~~~~A 460 (557)
. +.++ .++|. +-+..+-.=++..+....-.++-..| ..|..+..++.+..- . .+...+
T Consensus 196 ~IDs~~f~~~~~~l~qRtWL-iHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvt--nk~~rr~~ 272 (432)
T KOG2758|consen 196 YIDSKSFSTSAQQLQQRTWL-IHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVT--NKRRRRNR 272 (432)
T ss_pred HHcccccccHHHHHHHHHHH-HHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhc--chHhhHHH
Confidence 3 2222 12222 11122222222223322222222222 234555566665554 3 566777
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008705 461 IKCYRRAANCNDSE-AIALNQLAKLHHALGRDEEAAFYYKKDLERM 505 (557)
Q Consensus 461 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 505 (557)
++.+-++++..... .+.....-.|++-.-+++.|...++++-+.+
T Consensus 273 lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl 318 (432)
T KOG2758|consen 273 LKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVL 318 (432)
T ss_pred HHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 88888887764311 1112223345555568999999888887743
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.95 E-value=1.8e+02 Score=25.18 Aligned_cols=40 Identities=10% Similarity=-0.071 Sum_probs=29.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL 282 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 282 (557)
..++++.|.+++|.+.+++... +|++......++.+-...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 5678999999999999999988 777666555554443333
No 472
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=48.74 E-value=2.1e+02 Score=26.09 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHh-hhcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Q 008705 491 DEEAAFYYKKDLERMEA-EEREGPNMVEALIFLATHCR-AHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 491 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 544 (557)
.+.|...|+.|.+.... -.+.+|-.-...++.+.+|. -+++.++|....+++++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56888999999885443 22334444444555555544 56999999988777765
No 473
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.61 E-value=1.7e+02 Score=29.01 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 178 GLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
++.+-|.+.+.+|+-++|.++|+.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566779999999999999999998864
No 474
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.14 E-value=38 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
..+...|.-.-..|++++|+.+|.++++
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4466778888899999999999999876
No 475
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=47.18 E-value=95 Score=21.55 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (557)
...|.-+-..|++++|+.+|.++++.+...
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 344455566788888888888888865443
No 476
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=47.05 E-value=41 Score=19.74 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=21.4
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHhccC
Q 008705 516 VEALIFLA--THCRAHG-----RFEEAEVYCTRLLDYT 546 (557)
Q Consensus 516 ~~~~~~la--~~~~~~g-----~~~~A~~~~~~al~~~ 546 (557)
+.+.+.+| .++..-. +.++|..+|+++.+.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 35667777 4444432 5799999999987653
No 477
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.56 E-value=81 Score=27.50 Aligned_cols=49 Identities=16% Similarity=0.013 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 008705 251 HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP 300 (557)
Q Consensus 251 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 300 (557)
....++..++.+...| ++.++..++.++...|+.++|.....++....|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445566677777677 677888899999999999999999999999999
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.71 E-value=1.3e+02 Score=24.05 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCChhHHHHHH
Q 008705 106 YRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYG 183 (557)
Q Consensus 106 y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g 183 (557)
.++|+..|.+... .+++|++....|.-... ...+.. +.+.. ...+...+..+-..|
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~~-dp~~if--------------------~~L~~-~~IG~~~AlfYe~~A 106 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNCD-EPRELF--------------------QFLYS-KGIGTKLALFYEEWA 106 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcC-CHHHHH--------------------HHHHH-CCcchhhHHHHHHHH
Confidence 5667776666543 67888888666554321 122222 22211 223456677888889
Q ss_pred HHHHhcCChHHHHHHHHH
Q 008705 184 IVLKDKGNENLARTVFVE 201 (557)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~ 201 (557)
..+...|++.+|.++|+.
T Consensus 107 ~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 107 QLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 999999999999999874
No 479
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=45.46 E-value=1.6e+02 Score=23.54 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG--------PNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
+..+|....+.+++-.++-.|++|+...+...... .-.+....+||..+..+|+.+-.++|++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 34567777777788888888888777544321111 012345667999999999999999998755
No 480
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=45.36 E-value=72 Score=26.75 Aligned_cols=119 Identities=6% Similarity=-0.023 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcH--------------HHHhhcCCChhHHHHHHHHHH
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSI--------------DILNSLNLNNHWMKDYFLASA 244 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~--------------~~~~~l~~~~~~~~~~~la~~ 244 (557)
....++.....|+.++|+..+.++...--.....|-.+....... ...+............-.+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 455678888999999999999998764433332222221000000 000001112223333445888
Q ss_pred HHHHhhhHHHHHHHHHHHhc-------CCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 008705 245 YQELRMHKESLTKYEYLQGT-------FSF-SNYIQAQIAKAQYSLREFEQVEVIFEELLR 297 (557)
Q Consensus 245 ~~~~~~~~~A~~~~~~~l~~-------~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 297 (557)
.+..|+...|.+.++.+-.. -|- ....-...|..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 89999999999999887321 111 233456778889999999999999998875
No 481
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.91 E-value=80 Score=33.62 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=63.9
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCC----HHHHHHHhHHHH--hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNY----LSAWTLMGHEYV--EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 416 (557)
-++..+..+++..+.--|..++.+-|.+ .....+.+.+++ ..|++..++.-..-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3556666777777766666666666632 222344444444 3457777777777777777777777777777777
Q ss_pred HhCChHHHHHHHHHHHhcCCCCHH
Q 008705 417 MMHMPLYALHYFRKSVFLQPNDSR 440 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~~p~~~~ 440 (557)
..++++-|++...-.....|.+..
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcch
Confidence 777777777776666666676643
No 482
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.61 E-value=37 Score=24.38 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
.+..+...|.-+-+.|+|++|+.+|..+++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 483
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=44.03 E-value=41 Score=24.08 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705 353 HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI 400 (557)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 400 (557)
.++|+..+.+|+..+ ..|++++|+.+|..+++.
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHH
No 484
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.59 E-value=2.8e+02 Score=25.92 Aligned_cols=22 Identities=14% Similarity=-0.078 Sum_probs=12.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHh
Q 008705 242 ASAYQELRMHKESLTKYEYLQG 263 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~ 263 (557)
...++..++|++=-..+.+...
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~ 28 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQ 28 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHH
Confidence 3445556666665555555543
No 485
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.20 E-value=2.8e+02 Score=25.88 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=41.6
Q ss_pred HHHHhhhCchHHHHHHHHHHHhcCcC--CHHHHHHHhHH---HHhcCCch----HHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 344 GNYYSLKGQHEKSVVYFRRALKLDKN--YLSAWTLMGHE---YVEMKNTP----AAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 344 a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~---~~~~~~~~----~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
...+...++|++=-..+.+..+...+ ..+..+..+.. ...+.... .-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34566778888877777777644322 11111222221 22222211 34566666777888888888888777
Q ss_pred HHH
Q 008705 415 YEM 417 (557)
Q Consensus 415 ~~~ 417 (557)
+..
T Consensus 87 ~~~ 89 (277)
T PF13226_consen 87 WVH 89 (277)
T ss_pred HHH
Confidence 643
No 486
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=42.23 E-value=2.1e+02 Score=29.87 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=62.3
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705 416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 495 (557)
.+....+.+....+.-+.-........+..+..+.. .+..+.|-.+|++.+..+|+ ..++..|.-+.+.|-...|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD--VNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh--hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 345556666666666555555556667777888888 89999999999999998887 67788888899999888888
Q ss_pred HHHHH
Q 008705 496 FYYKK 500 (557)
Q Consensus 496 ~~~~~ 500 (557)
..+.+
T Consensus 95 ~~~~~ 99 (578)
T PRK15490 95 LILKK 99 (578)
T ss_pred HHHHH
Confidence 88773
No 487
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.41 E-value=9.5e+02 Score=31.48 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc----CC----HHHHHHHHHHHhccC
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH----GR----FEEAEVYCTRLLDYT 546 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~----~~~A~~~~~~al~~~ 546 (557)
.+.+...|....+.|+.++|-..|..|++ .+...+.+|...|...... +. -..|..+|-++....
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQ-------i~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQ-------IDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHH-------HHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc
Confidence 55677789999999999999999999999 4555677777777665432 22 234555555555543
No 488
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.30 E-value=80 Score=33.62 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC----hHHHHHHHHHHH--HhCChHHHHHH
Q 008705 354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD----YRAWYGLGQAYE--MMHMPLYALHY 427 (557)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~--~~~~~~~A~~~ 427 (557)
+++..++.++++.. .-|...+..+++..|..-|..++.+-|.+ .....+.+.++. ..|++..++.-
T Consensus 44 ~di~v~l~ra~~~~--------~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 44 EDIEVFLSRALELK--------EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred cchHHHHHHHHHHH--------hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 35555555555432 23566777888888888888888888754 333445555554 45788999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHH
Q 008705 428 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 428 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 481 (557)
..-++...|....++...+.+|.. .++++-|++...-.....|.+..+....
T Consensus 116 ~~la~~~~p~i~~~Ll~r~~~y~a--l~k~d~a~rdl~i~~~~~p~~~~~~eif 167 (748)
T KOG4151|consen 116 CELALESQPRISKALLKRARKYEA--LNKLDLAVRDLRIVEKMDPSNVSASEIF 167 (748)
T ss_pred hhhhhhccchHHHHHhhhhhHHHH--HHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 999999999999999999999999 9999999999887788888885544433
No 489
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.27 E-value=1.3e+02 Score=21.58 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=19.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc
Q 008705 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGP 513 (557)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 513 (557)
|.-.-..|++++|+.+|.++++.+.......|
T Consensus 13 Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~ 44 (77)
T cd02683 13 AVELDQEGRFQEALVCYQEGIDLLMQVLKGTK 44 (77)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34445667888888888887775544333334
No 490
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=40.00 E-value=2.3e+02 Score=29.61 Aligned_cols=82 Identities=7% Similarity=-0.002 Sum_probs=65.3
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHH
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A 460 (557)
+.+....+.+....+.-+.-...........+..+...+..+.|-.+|++.+..+|+ ..++..+.-+.+ .|-...|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~ 93 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN--TGLAKDA 93 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh--hhhhhHH
Confidence 334555677776766666555556677777888899999999999999999999988 677888888888 9998899
Q ss_pred HHHHHH
Q 008705 461 IKCYRR 466 (557)
Q Consensus 461 ~~~~~~ 466 (557)
...+++
T Consensus 94 ~~~~~~ 99 (578)
T PRK15490 94 QLILKK 99 (578)
T ss_pred HHHHHH
Confidence 888873
No 491
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.79 E-value=5.1e+02 Score=27.89 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=66.4
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHH
Q 008705 379 HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLE 458 (557)
Q Consensus 379 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~ 458 (557)
..+...|+..+|.+.-++. + -.+-+.|......+...+++++-.++-+. .. .|-.+.=...++.. .|+.+
T Consensus 692 ~~li~~g~~k~a~ql~~~F-k--ipdKr~~wLk~~aLa~~~kweeLekfAks---kk--sPIGy~PFVe~c~~--~~n~~ 761 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDF-K--IPDKRLWWLKLTALADIKKWEELEKFAKS---KK--SPIGYLPFVEACLK--QGNKD 761 (829)
T ss_pred HHHHHccchHHHHHHHHhc-C--CcchhhHHHHHHHHHhhhhHHHHHHHHhc---cC--CCCCchhHHHHHHh--cccHH
Confidence 3455667777777655443 2 22455666677778888888865444332 22 24445555666777 89999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 459 EAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYY 498 (557)
Q Consensus 459 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 498 (557)
+|.+++-++-. .+ .....|.+.|++.+|.+.-
T Consensus 762 EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 762 EAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHH
Confidence 99998876622 22 5778888999999888754
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.80 E-value=1.9e+02 Score=23.26 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
+.+.|.-.... +.....+..|...|..+...|++.+|.+.|+.
T Consensus 82 p~~if~~L~~~-----~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSK-----GIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44555554441 23455566667777777788888888777753
No 493
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.05 E-value=74 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhC
Q 008705 389 AAIDAYRRAVDIN 401 (557)
Q Consensus 389 ~A~~~~~~al~~~ 401 (557)
.|...|++.+...
T Consensus 5 RAR~IyeR~v~~h 17 (32)
T PF02184_consen 5 RARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHhC
Confidence 3334444444333
No 494
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=38.03 E-value=11 Score=39.15 Aligned_cols=54 Identities=13% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHh--cCCC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 008705 241 LASAYQELRMHKESLTKYEYLQG--TFSF-SNYIQAQIAKAQYSLREFEQVEVIFEE 294 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~--~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 294 (557)
-+..+...|++..|..++.++-. +.+. ........|.+....|+++.|+..+..
T Consensus 30 Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 30 AARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 37788889999999988888752 2232 344566778888889999999888865
No 495
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.52 E-value=5.6e+02 Score=27.65 Aligned_cols=103 Identities=14% Similarity=0.024 Sum_probs=68.4
Q ss_pred HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHH
Q 008705 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYAL 425 (557)
Q Consensus 346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 425 (557)
-+...|+..+|.+.-.+. + -.+-..|......+...+++++-.+.-+. ...+-.+.-...++...|+.++|.
T Consensus 693 ~li~~g~~k~a~ql~~~F-k--ipdKr~~wLk~~aLa~~~kweeLekfAks-----kksPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDF-K--IPDKRLWWLKLTALADIKKWEELEKFAKS-----KKSPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHccchHHHHHHHHhc-C--CcchhhHHHHHHHHHhhhhHHHHHHHHhc-----cCCCCCchhHHHHHHhcccHHHHh
Confidence 344567777777654432 2 22345677777888888888876554332 222444555567788999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705 426 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466 (557)
Q Consensus 426 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 466 (557)
+|+-++-.+ + ....+|.. .|++.+|.++--+
T Consensus 765 KYiprv~~l----~----ekv~ay~~--~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVGGL----Q----EKVKAYLR--VGDVKEAADLAAE 795 (829)
T ss_pred hhhhccCCh----H----HHHHHHHH--hccHHHHHHHHHH
Confidence 998765322 2 67778888 9999998876543
No 496
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=37.38 E-value=2.2e+02 Score=22.88 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcC
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLD 367 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 367 (557)
+.++.+-.++...|+.+....+.++...++
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~ 32 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGID 32 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCC
Confidence 344555566666777777777776665554
No 497
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=36.14 E-value=3.7e+02 Score=31.44 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=58.1
Q ss_pred CcHHHHHHHHHHHHhc----CCC--hHHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHHHHHhh
Q 008705 455 HMLEEAIKCYRRAANC----NDS--EAIALNQLAKLHHALG--------------------RDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~al~~~~~~ 508 (557)
..+++|+.+|.++... .|. ..++...++.++.... .-.++.....+++..-. .
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l-~ 437 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQL-K 437 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhh-h
Confidence 3466777777777532 122 1345566666666666 66777777777776211 1
Q ss_pred hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 509 EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 509 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
.-...+....+..+|.+|...|-..++.-+.+.++..
T Consensus 438 ~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 438 DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1122345788899999999999888887777776544
No 498
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.35 E-value=3.1e+02 Score=24.11 Aligned_cols=115 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHH-HHHHHHHhcCCCCHHHHHHHHHH
Q 008705 370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYAL-HYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
+....+.+-+.....|+++.|-++|--.+...+-|.+..-.+|.--...+.-..+. ++++......|............
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~ 119 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRR 119 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhh
Q ss_pred ------------------------HhHHhcCc--------HHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH
Q 008705 449 ------------------------YETEQLHM--------LEEAIKCYRRAANCND--SEAIALNQLAKLHH 486 (557)
Q Consensus 449 ------------------------~~~~~~~~--------~~~A~~~~~~al~~~p--~~~~~~~~la~~~~ 486 (557)
+.- ... +++.++-+...+-.-| ++++.++..|.|+.
T Consensus 120 ~~~pvfrsGs~t~tp~y~~~~LW~~l~--~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L 189 (199)
T PF04090_consen 120 IIAPVFRSGSRTHTPLYAITWLWILLI--QEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHL 189 (199)
T ss_pred cccccccCCCcccchHHHHHHHHHHHH--hhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
No 499
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.10 E-value=4.6e+02 Score=26.00 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=34.8
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-------YRAWYGLGQAYEMMHMPLYALHYFRKSVF 433 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 433 (557)
+..+-+.+.-+|+ .+| --+.++++|.. ..+-+..|-+|..+++|.+|+..|-.++-
T Consensus 238 L~GLlR~H~lLgD-hQa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHILLGD-HQA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHhhh-hHh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777 344 33445555543 11226678888888888888888877653
No 500
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.70 E-value=2.2e+02 Score=22.06 Aligned_cols=44 Identities=18% Similarity=0.051 Sum_probs=24.7
Q ss_pred HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 490 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 490 (557)
-|.+-.. .|++..|.+...++.+..+..+..+..-|..-..+||
T Consensus 65 ~Gl~al~--~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 65 RGLIALA--EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 3444444 6777777777777765544444445444555554443
Done!