Query 008705
Match_columns 557
No_of_seqs 1111 out of 2913
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 09:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-42 6E-47 344.0 43.6 367 155-556 12-378 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-42 2.3E-46 339.8 44.7 382 95-531 4-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 3.8E-40 1.3E-44 346.4 47.6 445 91-550 118-584 (597)
4 2gw1_A Mitochondrial precursor 100.0 2E-37 6.7E-42 319.4 36.0 408 90-550 6-483 (514)
5 2y4t_A DNAJ homolog subfamily 100.0 2.6E-36 8.8E-41 305.8 37.4 351 165-549 15-414 (450)
6 2xpi_A Anaphase-promoting comp 100.0 7.5E-36 2.6E-40 313.7 42.0 425 91-550 85-550 (597)
7 3fp2_A TPR repeat-containing p 100.0 2.3E-36 7.8E-41 313.4 35.6 402 90-551 25-497 (537)
8 3ieg_A DNAJ homolog subfamily 100.0 6.9E-35 2.3E-39 285.5 39.9 322 175-530 2-354 (359)
9 2y4t_A DNAJ homolog subfamily 100.0 4.7E-35 1.6E-39 296.5 39.2 369 82-536 18-445 (450)
10 2gw1_A Mitochondrial precursor 100.0 1.2E-34 3.9E-39 298.7 34.5 340 175-550 5-449 (514)
11 3ieg_A DNAJ homolog subfamily 100.0 2.1E-33 7.1E-38 275.0 39.7 305 238-551 6-341 (359)
12 3fp2_A TPR repeat-containing p 100.0 1.6E-33 5.4E-38 292.0 38.0 346 175-550 24-462 (537)
13 3hym_B Cell division cycle pro 100.0 4.6E-33 1.6E-37 269.4 32.2 297 169-533 15-322 (330)
14 4g1t_A Interferon-induced prot 100.0 8.2E-33 2.8E-37 281.8 34.2 349 173-548 48-462 (472)
15 3hym_B Cell division cycle pro 100.0 1.1E-31 3.7E-36 259.7 33.0 283 259-550 12-304 (330)
16 4g1t_A Interferon-induced prot 100.0 1.6E-31 5.4E-36 272.4 31.4 365 91-524 52-472 (472)
17 1fch_A Peroxisomal targeting s 100.0 6.7E-32 2.3E-36 265.6 23.9 299 244-545 34-359 (368)
18 1fch_A Peroxisomal targeting s 100.0 2.3E-31 7.8E-36 261.8 27.0 308 154-507 37-362 (368)
19 4eqf_A PEX5-related protein; a 100.0 1.5E-31 5.3E-36 262.8 24.5 279 174-503 63-355 (365)
20 4eqf_A PEX5-related protein; a 100.0 1.2E-30 4E-35 256.6 25.8 271 239-545 69-356 (365)
21 3cv0_A Peroxisome targeting si 100.0 1.2E-29 4.1E-34 245.0 29.5 286 174-507 19-318 (327)
22 2xm6_A Protein corresponding t 100.0 1.1E-27 3.8E-32 244.8 44.2 353 89-547 38-434 (490)
23 2h6f_A Protein farnesyltransfe 100.0 1.4E-29 4.9E-34 247.0 27.0 260 201-529 88-366 (382)
24 2h6f_A Protein farnesyltransfe 100.0 2.4E-29 8.3E-34 245.4 27.5 257 170-488 91-366 (382)
25 3cv0_A Peroxisome targeting si 100.0 1.9E-29 6.3E-34 243.6 25.1 266 239-547 25-317 (327)
26 2ooe_A Cleavage stimulation fa 100.0 2E-26 6.7E-31 238.0 39.0 355 157-547 27-456 (530)
27 2ooe_A Cleavage stimulation fa 100.0 1.2E-25 4E-30 232.2 42.8 416 87-548 10-495 (530)
28 2pl2_A Hypothetical conserved 100.0 6.5E-28 2.2E-32 218.0 22.5 201 334-544 2-213 (217)
29 2xm6_A Protein corresponding t 100.0 6.1E-25 2.1E-29 224.5 43.5 323 173-547 36-398 (490)
30 3uq3_A Heat shock protein STI1 100.0 6.3E-27 2.1E-31 217.6 25.8 241 174-484 3-256 (258)
31 3u4t_A TPR repeat-containing p 100.0 2.9E-27 1E-31 222.0 23.3 253 175-489 2-269 (272)
32 3sf4_A G-protein-signaling mod 100.0 2.2E-27 7.5E-32 236.4 22.1 310 173-534 6-365 (406)
33 2pl2_A Hypothetical conserved 100.0 3.9E-27 1.3E-31 212.9 21.7 200 266-502 2-212 (217)
34 3u4t_A TPR repeat-containing p 100.0 2.5E-26 8.7E-31 215.6 25.3 253 238-530 6-269 (272)
35 3mkr_A Coatomer subunit epsilo 99.9 4.5E-26 1.5E-30 215.3 26.2 278 241-539 5-288 (291)
36 3uq3_A Heat shock protein STI1 99.9 3.6E-26 1.2E-30 212.5 24.8 250 237-525 7-256 (258)
37 3e4b_A ALGK; tetratricopeptide 99.9 4.9E-26 1.7E-30 229.2 24.6 351 94-548 7-390 (452)
38 3mkr_A Coatomer subunit epsilo 99.9 2E-25 6.8E-30 210.8 26.9 275 184-497 7-287 (291)
39 4a1s_A PINS, partner of inscut 99.9 1.1E-25 3.8E-30 224.7 20.7 280 238-548 51-375 (411)
40 3sf4_A G-protein-signaling mod 99.9 8.6E-26 2.9E-30 224.9 19.5 280 236-546 10-337 (406)
41 3ro2_A PINS homolog, G-protein 99.9 2.8E-25 9.6E-30 214.8 21.1 281 237-548 7-335 (338)
42 4a1s_A PINS, partner of inscut 99.9 2.1E-25 7.1E-30 222.7 19.2 281 173-504 45-372 (411)
43 3ro2_A PINS homolog, G-protein 99.9 5.9E-25 2E-29 212.5 21.0 277 176-503 5-331 (338)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.8E-25 9.6E-30 208.7 16.9 251 241-539 11-269 (275)
45 3vtx_A MAMA; tetratricopeptide 99.9 7.5E-24 2.6E-28 186.1 24.2 174 335-517 3-176 (184)
46 2q7f_A YRRB protein; TPR, prot 99.9 2.2E-24 7.4E-29 198.6 21.1 209 241-485 29-237 (243)
47 2q7f_A YRRB protein; TPR, prot 99.9 3.9E-24 1.3E-28 196.8 22.7 220 173-451 20-239 (243)
48 2ho1_A Type 4 fimbrial biogene 99.9 1.1E-23 3.8E-28 195.1 24.5 210 333-551 32-244 (252)
49 3vtx_A MAMA; tetratricopeptide 99.9 8E-24 2.7E-28 186.0 22.0 172 369-549 3-174 (184)
50 1xnf_A Lipoprotein NLPI; TPR, 99.9 9.1E-25 3.1E-29 205.2 16.2 254 183-498 12-269 (275)
51 1ouv_A Conserved hypothetical 99.9 1.4E-22 4.6E-27 190.3 30.6 237 265-554 2-260 (273)
52 3e4b_A ALGK; tetratricopeptide 99.9 1.4E-23 4.9E-28 211.2 25.1 314 180-548 7-354 (452)
53 2vq2_A PILW, putative fimbrial 99.9 3.3E-23 1.1E-27 188.1 25.2 210 333-551 4-217 (225)
54 4abn_A Tetratricopeptide repea 99.9 5E-24 1.7E-28 215.8 21.8 212 321-542 86-318 (474)
55 4abn_A Tetratricopeptide repea 99.9 7.4E-24 2.5E-28 214.6 21.9 217 248-501 81-318 (474)
56 2ho1_A Type 4 fimbrial biogene 99.9 6.5E-23 2.2E-27 189.9 25.1 209 269-520 37-247 (252)
57 2vq2_A PILW, putative fimbrial 99.9 1.4E-22 4.7E-27 184.0 26.6 214 265-521 4-221 (225)
58 2ond_A Cleavage stimulation fa 99.9 1.9E-22 6.6E-27 192.7 24.5 230 193-476 33-276 (308)
59 4i17_A Hypothetical protein; T 99.9 1.7E-22 5.8E-27 184.1 22.2 185 334-527 4-225 (228)
60 2ond_A Cleavage stimulation fa 99.9 6.4E-22 2.2E-26 189.0 27.1 232 286-549 33-274 (308)
61 1ouv_A Conserved hypothetical 99.9 1.4E-21 4.7E-26 183.4 28.5 237 172-479 2-260 (273)
62 3ulq_A Response regulator aspa 99.9 1.7E-22 5.7E-27 199.6 22.3 294 242-546 19-369 (383)
63 4gyw_A UDP-N-acetylglucosamine 99.9 1.7E-22 5.7E-27 212.3 21.3 173 332-506 4-176 (723)
64 3ulq_A Response regulator aspa 99.9 7.4E-22 2.5E-26 195.0 24.8 238 237-504 105-368 (383)
65 1xi4_A Clathrin heavy chain; a 99.9 3.8E-20 1.3E-24 197.5 39.1 394 91-541 986-1441(1630)
66 4gyw_A UDP-N-acetylglucosamine 99.9 9E-23 3.1E-27 214.3 18.6 174 366-548 4-177 (723)
67 4i17_A Hypothetical protein; T 99.9 7.6E-22 2.6E-26 179.8 22.5 208 236-486 8-225 (228)
68 3nf1_A KLC 1, kinesin light ch 99.9 1.2E-22 4.2E-27 194.1 13.6 249 265-548 23-310 (311)
69 3q15_A PSP28, response regulat 99.9 6.1E-21 2.1E-25 188.0 23.2 238 271-546 103-366 (378)
70 3dra_A Protein farnesyltransfe 99.9 1.1E-19 3.7E-24 170.1 29.8 242 242-525 39-302 (306)
71 3qky_A Outer membrane assembly 99.9 5.9E-21 2E-25 177.8 19.3 197 331-536 9-252 (261)
72 3nf1_A KLC 1, kinesin light ch 99.9 6.4E-22 2.2E-26 189.1 12.9 249 171-472 22-309 (311)
73 3qky_A Outer membrane assembly 99.9 1.8E-20 6E-25 174.5 22.1 192 171-404 10-228 (261)
74 2pzi_A Probable serine/threoni 99.9 7.7E-21 2.6E-25 201.0 21.8 205 263-507 388-601 (681)
75 3dra_A Protein farnesyltransfe 99.9 1.2E-19 4.2E-24 169.7 26.6 221 322-548 52-291 (306)
76 3q15_A PSP28, response regulat 99.9 6.5E-20 2.2E-24 180.6 25.4 238 237-504 103-365 (378)
77 1hz4_A MALT regulatory protein 99.9 3.2E-19 1.1E-23 175.4 29.4 278 238-546 17-323 (373)
78 4ga2_A E3 SUMO-protein ligase 99.9 1.9E-21 6.4E-26 164.1 11.4 146 343-490 3-149 (150)
79 2pzi_A Probable serine/threoni 99.9 5.1E-21 1.7E-25 202.3 17.4 188 331-531 388-583 (681)
80 1hz4_A MALT regulatory protein 99.8 1.1E-18 3.6E-23 171.6 30.9 311 176-548 14-352 (373)
81 3urz_A Uncharacterized protein 99.8 3.4E-20 1.2E-24 166.0 17.3 165 336-503 3-185 (208)
82 1qqe_A Vesicular transport pro 99.8 5.1E-20 1.8E-24 174.2 19.0 216 242-485 44-284 (292)
83 1qqe_A Vesicular transport pro 99.8 5.6E-20 1.9E-24 174.0 19.0 226 250-526 32-284 (292)
84 1xi4_A Clathrin heavy chain; a 99.8 8.7E-18 3E-22 179.6 37.5 319 173-546 982-1310(1630)
85 1b89_A Protein (clathrin heavy 99.8 4E-21 1.4E-25 185.0 10.2 314 174-543 30-353 (449)
86 3urz_A Uncharacterized protein 99.8 1.1E-19 3.8E-24 162.6 18.5 178 303-484 4-199 (208)
87 3as5_A MAMA; tetratricopeptide 99.8 1.4E-19 4.8E-24 158.5 18.8 165 337-503 8-172 (186)
88 3as5_A MAMA; tetratricopeptide 99.8 1.6E-19 5.6E-24 158.0 19.2 170 304-475 9-178 (186)
89 4ga2_A E3 SUMO-protein ligase 99.8 8.5E-21 2.9E-25 160.1 9.0 147 376-531 2-149 (150)
90 4e6h_A MRNA 3'-END-processing 99.8 5.4E-17 1.8E-21 168.5 37.3 371 165-548 55-536 (679)
91 3edt_B KLC 2, kinesin light ch 99.8 2.1E-19 7E-24 169.0 16.2 237 280-546 12-282 (283)
92 2yhc_A BAMD, UPF0169 lipoprote 99.8 9.9E-19 3.4E-23 158.6 19.7 191 336-551 3-219 (225)
93 3dss_A Geranylgeranyl transfer 99.8 4.1E-17 1.4E-21 153.3 30.7 239 246-527 40-320 (331)
94 3edt_B KLC 2, kinesin light ch 99.8 2.1E-19 7.1E-24 168.9 14.7 228 248-503 14-280 (283)
95 4e6h_A MRNA 3'-END-processing 99.8 1.3E-15 4.6E-20 158.1 43.5 423 86-551 62-576 (679)
96 1b89_A Protein (clathrin heavy 99.8 9.1E-20 3.1E-24 175.6 11.2 291 184-542 11-308 (449)
97 2yhc_A BAMD, UPF0169 lipoprote 99.8 5.5E-18 1.9E-22 153.7 21.1 200 238-503 7-212 (225)
98 4gco_A Protein STI-1; structur 99.8 9.9E-19 3.4E-23 142.3 14.3 119 364-484 6-124 (126)
99 2r5s_A Uncharacterized protein 99.8 7.5E-19 2.6E-23 152.8 14.4 167 334-503 3-172 (176)
100 3dss_A Geranylgeranyl transfer 99.8 6.5E-17 2.2E-21 151.9 27.9 237 281-550 41-309 (331)
101 4gco_A Protein STI-1; structur 99.8 1.4E-18 4.6E-23 141.5 14.1 121 329-449 5-125 (126)
102 3q7a_A Farnesyltransferase alp 99.8 4.5E-17 1.5E-21 153.6 24.7 240 244-525 63-346 (349)
103 2r5s_A Uncharacterized protein 99.8 8.1E-19 2.8E-23 152.5 11.9 169 367-544 2-172 (176)
104 3qou_A Protein YBBN; thioredox 99.8 8.2E-18 2.8E-22 158.5 18.7 169 333-503 113-283 (287)
105 3q7a_A Farnesyltransferase alp 99.8 4.5E-17 1.5E-21 153.5 22.7 225 321-547 72-334 (349)
106 3qou_A Protein YBBN; thioredox 99.8 1.3E-17 4.4E-22 157.1 17.8 169 367-544 113-283 (287)
107 3gyz_A Chaperone protein IPGC; 99.8 2.5E-18 8.5E-23 144.0 11.3 122 352-475 17-138 (151)
108 4f3v_A ESX-1 secretion system 99.7 6.1E-18 2.1E-22 154.2 12.7 200 340-548 10-240 (282)
109 2vsy_A XCC0866; transferase, g 99.7 1.9E-17 6.6E-22 172.1 17.3 165 350-523 2-169 (568)
110 1p5q_A FKBP52, FK506-binding p 99.7 2.6E-19 9E-24 172.6 2.4 186 348-544 76-293 (336)
111 3gyz_A Chaperone protein IPGC; 99.7 8.4E-18 2.9E-22 140.8 9.6 110 392-503 23-132 (151)
112 2vsy_A XCC0866; transferase, g 99.7 7.7E-17 2.6E-21 167.6 18.6 157 384-549 2-161 (568)
113 2ifu_A Gamma-SNAP; membrane fu 99.7 2.4E-16 8.3E-21 150.1 20.4 188 343-537 42-253 (307)
114 3rjv_A Putative SEL1 repeat pr 99.7 2E-16 7E-21 141.7 18.4 183 354-551 3-203 (212)
115 2ifu_A Gamma-SNAP; membrane fu 99.7 3E-16 1E-20 149.4 19.4 217 247-496 3-253 (307)
116 2c2l_A CHIP, carboxy terminus 99.7 3.9E-17 1.3E-21 153.2 13.0 199 334-546 1-200 (281)
117 2vgx_A Chaperone SYCD; alterna 99.7 3.2E-17 1.1E-21 137.6 9.9 119 357-477 7-125 (148)
118 4f3v_A ESX-1 secretion system 99.7 1.1E-16 3.6E-21 146.1 13.6 203 275-523 13-248 (282)
119 3rjv_A Putative SEL1 repeat pr 99.7 1.1E-15 3.9E-20 136.8 19.0 176 253-472 4-199 (212)
120 1p5q_A FKBP52, FK506-binding p 99.7 5.2E-17 1.8E-21 156.5 10.2 155 349-505 125-295 (336)
121 2c2l_A CHIP, carboxy terminus 99.7 4E-16 1.4E-20 146.3 15.2 197 173-399 1-198 (281)
122 2fo7_A Synthetic consensus TPR 99.7 2.1E-15 7.2E-20 124.0 17.4 134 338-473 2-135 (136)
123 2xcb_A PCRH, regulatory protei 99.7 1.7E-16 6E-21 132.3 10.5 121 358-480 5-125 (142)
124 2vgx_A Chaperone SYCD; alterna 99.7 2.2E-16 7.4E-21 132.5 10.0 112 391-504 7-118 (148)
125 2fo7_A Synthetic consensus TPR 99.7 3.2E-15 1.1E-19 122.8 16.9 132 407-547 3-134 (136)
126 1dce_A Protein (RAB geranylger 99.7 3.5E-16 1.2E-20 160.4 12.2 188 352-548 44-270 (567)
127 2qfc_A PLCR protein; TPR, HTH, 99.7 1.7E-14 6E-19 136.3 22.6 176 368-546 72-267 (293)
128 3upv_A Heat shock protein STI1 99.6 4.1E-15 1.4E-19 121.0 15.2 114 371-486 4-123 (126)
129 2xcb_A PCRH, regulatory protei 99.6 4.8E-16 1.7E-20 129.6 9.7 111 392-504 5-115 (142)
130 3upv_A Heat shock protein STI1 99.6 4.1E-15 1.4E-19 121.1 14.1 116 336-451 3-124 (126)
131 2e2e_A Formate-dependent nitri 99.6 2.2E-15 7.7E-20 130.8 13.0 130 347-478 20-152 (177)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.5E-14 5E-19 129.7 18.6 133 338-475 7-155 (213)
133 3mv2_B Coatomer subunit epsilo 99.6 1.9E-14 6.6E-19 132.9 19.5 249 242-520 20-291 (310)
134 2qfc_A PLCR protein; TPR, HTH, 99.6 2.4E-14 8.1E-19 135.3 20.7 168 336-505 74-267 (293)
135 2fbn_A 70 kDa peptidylprolyl i 99.6 6.3E-16 2.1E-20 137.0 9.0 159 342-502 9-184 (198)
136 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.1E-14 3.9E-19 130.4 17.3 132 372-515 7-154 (213)
137 1a17_A Serine/threonine protei 99.6 1.5E-14 5.2E-19 123.8 17.3 128 338-467 14-143 (166)
138 1dce_A Protein (RAB geranylger 99.6 1.9E-14 6.6E-19 147.5 20.6 158 334-493 60-244 (567)
139 1a17_A Serine/threonine protei 99.6 2E-14 7E-19 123.0 17.3 134 371-506 13-148 (166)
140 2lni_A Stress-induced-phosphop 99.6 1.4E-14 4.8E-19 118.8 15.1 120 368-489 13-132 (133)
141 3u3w_A Transcriptional activat 99.6 3E-14 1E-18 134.6 19.0 169 375-546 79-267 (293)
142 2fbn_A 70 kDa peptidylprolyl i 99.6 8.3E-16 2.8E-20 136.3 7.7 165 372-545 5-186 (198)
143 2e2e_A Formate-dependent nitri 99.6 8.4E-15 2.9E-19 127.1 13.3 130 381-519 20-152 (177)
144 2vyi_A SGTA protein; chaperone 99.6 1.5E-14 5.1E-19 118.1 14.0 122 368-491 9-130 (131)
145 3mv2_B Coatomer subunit epsilo 99.6 4.8E-14 1.6E-18 130.3 17.7 252 276-550 20-287 (310)
146 2lni_A Stress-induced-phosphop 99.6 3.2E-14 1.1E-18 116.6 15.1 122 401-531 12-133 (133)
147 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.4E-16 4.7E-21 160.3 0.8 145 350-496 247-406 (457)
148 3sz7_A HSC70 cochaperone (SGT) 99.6 1.4E-14 4.9E-19 123.9 13.2 113 336-448 10-122 (164)
149 2vyi_A SGTA protein; chaperone 99.6 1.8E-14 6.3E-19 117.6 13.3 123 333-457 8-130 (131)
150 3sz7_A HSC70 cochaperone (SGT) 99.6 1.9E-14 6.6E-19 123.1 13.9 117 367-485 7-123 (164)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2E-15 6.8E-20 151.8 8.5 147 315-463 246-407 (457)
152 3u3w_A Transcriptional activat 99.6 5.9E-14 2E-18 132.6 17.6 164 341-506 79-268 (293)
153 4gcn_A Protein STI-1; structur 99.6 2.6E-14 8.9E-19 116.3 12.6 99 373-473 10-115 (127)
154 1na0_A Designed protein CTPR3; 99.6 1.6E-13 5.5E-18 110.9 16.6 116 371-488 9-124 (125)
155 3gw4_A Uncharacterized protein 99.6 8.7E-14 3E-18 123.4 15.7 153 349-503 4-175 (203)
156 3q49_B STIP1 homology and U bo 99.5 5.5E-14 1.9E-18 116.1 13.3 104 334-437 6-109 (137)
157 3q49_B STIP1 homology and U bo 99.5 5.9E-14 2E-18 115.9 13.5 121 366-488 4-129 (137)
158 1hxi_A PEX5, peroxisome target 99.5 5.2E-14 1.8E-18 113.3 12.5 100 339-438 19-118 (121)
159 2hr2_A Hypothetical protein; a 99.5 1.1E-14 3.8E-19 120.0 8.5 101 374-476 14-137 (159)
160 1na0_A Designed protein CTPR3; 99.5 2.4E-13 8.2E-18 109.8 16.4 115 337-451 9-123 (125)
161 1hxi_A PEX5, peroxisome target 99.5 4.7E-14 1.6E-18 113.6 11.8 103 372-476 18-120 (121)
162 3gw4_A Uncharacterized protein 99.5 6.8E-14 2.3E-18 124.1 13.5 156 314-471 3-177 (203)
163 2hr2_A Hypothetical protein; a 99.5 3.3E-14 1.1E-18 117.1 10.5 110 337-446 11-143 (159)
164 4gcn_A Protein STI-1; structur 99.5 1.3E-13 4.5E-18 112.1 13.7 109 439-549 8-116 (127)
165 1elw_A TPR1-domain of HOP; HOP 99.5 3.3E-13 1.1E-17 107.8 15.8 111 338-448 5-115 (118)
166 1elw_A TPR1-domain of HOP; HOP 99.5 3.5E-13 1.2E-17 107.7 15.8 114 370-485 3-116 (118)
167 3rkv_A Putative peptidylprolyl 99.5 7.3E-14 2.5E-18 119.2 12.1 114 337-450 11-143 (162)
168 3rkv_A Putative peptidylprolyl 99.5 8E-14 2.7E-18 118.9 12.1 118 371-490 11-147 (162)
169 2uy1_A Cleavage stimulation fa 99.5 5.9E-11 2E-15 119.8 34.6 347 175-544 13-412 (493)
170 2dba_A Smooth muscle cell asso 99.5 6.3E-13 2.2E-17 111.1 15.4 117 333-449 24-143 (148)
171 4b4t_Q 26S proteasome regulato 99.5 6E-13 2.1E-17 133.3 17.9 207 337-545 4-245 (434)
172 2dba_A Smooth muscle cell asso 99.5 5.2E-13 1.8E-17 111.6 14.5 120 366-487 23-145 (148)
173 2xev_A YBGF; tetratricopeptide 99.5 9.4E-13 3.2E-17 107.3 15.3 110 339-448 4-119 (129)
174 2if4_A ATFKBP42; FKBP-like, al 99.5 1E-13 3.5E-18 133.5 10.5 137 337-474 179-332 (338)
175 1wao_1 Serine/threonine protei 99.5 2.9E-14 1E-18 143.8 6.3 168 337-506 6-199 (477)
176 2kck_A TPR repeat; tetratricop 99.5 2.9E-13 1E-17 107.0 10.9 104 334-437 3-109 (112)
177 2xev_A YBGF; tetratricopeptide 99.5 1.1E-12 3.8E-17 106.8 14.6 116 373-490 4-125 (129)
178 2kck_A TPR repeat; tetratricop 99.5 5.2E-13 1.8E-17 105.6 12.1 108 366-475 1-111 (112)
179 2uy1_A Cleavage stimulation fa 99.5 5.3E-10 1.8E-14 112.8 36.1 375 91-506 15-415 (493)
180 1zu2_A Mitochondrial import re 99.4 3.3E-13 1.1E-17 110.8 9.9 92 349-440 14-126 (158)
181 1elr_A TPR2A-domain of HOP; HO 99.4 7.4E-13 2.5E-17 107.9 11.9 112 372-486 5-123 (131)
182 1elr_A TPR2A-domain of HOP; HO 99.4 7.2E-13 2.5E-17 108.0 11.6 115 336-451 3-124 (131)
183 2if4_A ATFKBP42; FKBP-like, al 99.4 1.2E-13 4.1E-18 132.9 7.8 134 368-503 176-327 (338)
184 1wao_1 Serine/threonine protei 99.4 3.6E-14 1.2E-18 143.1 3.8 125 407-540 8-134 (477)
185 1ihg_A Cyclophilin 40; ppiase 99.4 1.7E-12 5.9E-17 126.1 14.5 139 337-495 223-361 (370)
186 4b4t_Q 26S proteasome regulato 99.4 2.7E-12 9.3E-17 128.5 16.1 218 270-506 5-247 (434)
187 1zu2_A Mitochondrial import re 99.4 6.7E-13 2.3E-17 109.1 9.3 92 382-475 13-125 (158)
188 1ihg_A Cyclophilin 40; ppiase 99.4 1.6E-12 5.5E-17 126.4 13.8 114 371-504 223-336 (370)
189 3k9i_A BH0479 protein; putativ 99.4 3.7E-13 1.3E-17 107.7 7.6 94 350-443 3-99 (117)
190 3ro3_A PINS homolog, G-protein 99.4 2.2E-12 7.6E-17 109.4 12.7 138 406-546 10-159 (164)
191 3k9i_A BH0479 protein; putativ 99.4 4.2E-13 1.4E-17 107.4 7.2 97 383-481 2-101 (117)
192 3ro3_A PINS homolog, G-protein 99.3 6E-12 2.1E-16 106.7 11.3 137 338-504 10-158 (164)
193 2kat_A Uncharacterized protein 99.2 9.2E-11 3.2E-15 93.2 11.0 82 355-436 3-84 (115)
194 2kat_A Uncharacterized protein 99.2 8.3E-11 2.8E-15 93.5 10.6 85 388-474 2-86 (115)
195 2l6j_A TPR repeat-containing p 99.2 1.6E-11 5.4E-16 96.9 5.4 92 337-428 4-101 (111)
196 2l6j_A TPR repeat-containing p 99.2 1.8E-11 6.2E-16 96.5 5.0 92 371-464 4-101 (111)
197 1na3_A Designed protein CTPR2; 99.1 4E-10 1.4E-14 85.0 11.1 77 373-449 11-87 (91)
198 1na3_A Designed protein CTPR2; 99.1 3.5E-10 1.2E-14 85.3 10.7 85 403-489 7-91 (91)
199 1klx_A Cysteine rich protein B 99.1 1.8E-09 6.3E-14 88.6 13.4 113 419-548 9-129 (138)
200 3n71_A Histone lysine methyltr 99.0 1.9E-09 6.4E-14 107.8 13.9 132 411-544 315-463 (490)
201 3ma5_A Tetratricopeptide repea 99.0 1.1E-09 3.6E-14 84.5 8.8 69 401-471 3-71 (100)
202 3ma5_A Tetratricopeptide repea 99.0 1.5E-09 5.1E-14 83.6 9.6 70 367-436 3-72 (100)
203 3ly7_A Transcriptional activat 99.0 2.1E-08 7.2E-13 94.2 17.8 132 342-476 201-345 (372)
204 2kc7_A BFR218_protein; tetratr 99.0 7.9E-10 2.7E-14 85.0 7.0 90 341-438 4-94 (99)
205 1klx_A Cysteine rich protein B 99.0 2.4E-08 8.2E-13 81.9 15.2 88 343-434 31-126 (138)
206 3u64_A Protein TP_0956; tetrat 98.9 9.9E-08 3.4E-12 85.8 18.9 106 366-473 147-272 (301)
207 3n71_A Histone lysine methyltr 98.9 6.9E-09 2.4E-13 103.7 11.9 126 377-504 315-464 (490)
208 3ly7_A Transcriptional activat 98.9 5.8E-08 2E-12 91.3 16.9 145 363-517 186-345 (372)
209 3u64_A Protein TP_0956; tetrat 98.9 5.8E-08 2E-12 87.3 15.8 110 432-548 145-272 (301)
210 2kc7_A BFR218_protein; tetratr 98.9 4.5E-09 1.6E-13 80.6 7.7 92 179-303 3-95 (99)
211 3bee_A Putative YFRE protein; 98.7 1.5E-07 5E-12 70.7 10.2 70 334-403 3-75 (93)
212 3bee_A Putative YFRE protein; 98.7 1.9E-07 6.5E-12 70.1 10.6 71 367-437 2-75 (93)
213 1pc2_A Mitochondria fission pr 98.6 4E-07 1.4E-11 73.8 10.4 94 352-445 13-111 (152)
214 4g26_A Pentatricopeptide repea 98.6 5.6E-06 1.9E-10 83.4 21.0 166 336-503 24-203 (501)
215 3ffl_A Anaphase-promoting comp 98.6 4.9E-08 1.7E-12 79.4 4.7 126 10-202 22-148 (167)
216 3qwp_A SET and MYND domain-con 98.5 6.3E-07 2.1E-11 88.3 13.1 114 414-529 296-426 (429)
217 3qww_A SET and MYND domain-con 98.5 3.2E-07 1.1E-11 90.1 10.8 92 454-545 311-411 (433)
218 2v5f_A Prolyl 4-hydroxylase su 98.5 8.4E-07 2.9E-11 68.4 10.8 77 336-412 4-87 (104)
219 4g26_A Pentatricopeptide repea 98.5 3.1E-05 1.1E-09 78.0 25.1 162 307-470 30-204 (501)
220 1pc2_A Mitochondria fission pr 98.5 1.6E-06 5.6E-11 70.2 11.8 79 423-503 16-99 (152)
221 2v5f_A Prolyl 4-hydroxylase su 98.5 8.6E-07 3E-11 68.3 9.5 76 475-550 5-80 (104)
222 3qww_A SET and MYND domain-con 98.5 6.4E-07 2.2E-11 88.0 10.8 102 417-520 310-428 (433)
223 3qwp_A SET and MYND domain-con 98.4 3.4E-06 1.2E-10 83.1 13.1 95 449-545 297-400 (429)
224 4h7y_A Dual specificity protei 98.1 4E-05 1.4E-09 60.9 10.7 108 434-551 8-129 (161)
225 4h7y_A Dual specificity protei 98.0 0.00014 4.7E-09 57.8 12.8 105 367-474 9-127 (161)
226 1nzn_A CGI-135 protein, fissio 97.9 8E-05 2.7E-09 58.0 10.1 90 354-443 18-112 (126)
227 1nzn_A CGI-135 protein, fissio 97.9 0.00025 8.7E-09 55.2 11.7 91 422-521 18-113 (126)
228 1qsa_A Protein (soluble lytic 97.7 0.034 1.1E-06 56.9 28.7 124 411-544 220-347 (618)
229 3ffl_A Anaphase-promoting comp 97.6 0.00067 2.3E-08 55.3 10.9 97 444-542 25-148 (167)
230 3kae_A CDC27, possible protein 97.5 0.027 9.2E-07 45.5 19.4 201 91-302 34-241 (242)
231 3o48_A Mitochondria fission 1 97.2 0.0068 2.3E-07 47.3 11.4 97 156-278 21-121 (134)
232 3o48_A Mitochondria fission 1 97.0 0.0089 3E-07 46.6 10.7 75 370-444 39-117 (134)
233 1y8m_A FIS1; mitochondria, unk 96.9 0.026 9E-07 44.6 12.9 75 369-443 37-115 (144)
234 3txn_A 26S proteasome regulato 96.8 0.025 8.7E-07 54.1 15.0 99 443-544 103-209 (394)
235 1y8m_A FIS1; mitochondria, unk 96.8 0.046 1.6E-06 43.2 13.6 76 437-521 37-116 (144)
236 1qsa_A Protein (soluble lytic 96.6 0.76 2.6E-05 47.0 36.6 184 347-542 224-439 (618)
237 3txn_A 26S proteasome regulato 96.6 0.14 4.7E-06 49.0 17.9 163 305-469 21-209 (394)
238 4gns_B Protein CSD3, chitin bi 96.4 0.053 1.8E-06 56.5 14.7 56 376-431 342-397 (754)
239 4ady_A RPN2, 26S proteasome re 96.4 0.74 2.5E-05 49.0 23.2 43 92-134 232-274 (963)
240 3kae_A CDC27, possible protein 96.3 0.34 1.2E-05 39.2 17.7 99 173-301 30-146 (242)
241 3mkq_A Coatomer beta'-subunit; 96.3 0.15 5.2E-06 54.6 18.4 160 341-535 633-802 (814)
242 3mkq_B Coatomer subunit alpha; 96.1 0.18 6.2E-06 41.8 13.8 101 244-362 14-114 (177)
243 3mkq_A Coatomer beta'-subunit; 96.1 0.11 3.8E-06 55.7 16.4 97 280-397 610-707 (814)
244 4gns_B Protein CSD3, chitin bi 96.1 0.075 2.6E-06 55.4 13.8 116 349-467 260-397 (754)
245 4b4t_P 26S proteasome regulato 95.8 1.6 5.3E-05 42.8 22.8 190 351-545 30-247 (445)
246 2ff4_A Probable regulatory pro 95.7 0.2 6.8E-06 48.3 14.4 123 378-515 122-245 (388)
247 3spa_A Mtrpol, DNA-directed RN 95.7 0.14 4.7E-06 54.7 13.8 98 405-504 127-230 (1134)
248 1zbp_A Hypothetical protein VP 95.5 0.28 9.6E-06 43.5 13.2 112 155-266 10-131 (273)
249 3mkq_B Coatomer subunit alpha; 95.5 0.61 2.1E-05 38.7 14.4 43 349-396 17-59 (177)
250 4b4t_P 26S proteasome regulato 95.2 2.2 7.7E-05 41.7 20.4 187 248-434 29-247 (445)
251 3spa_A Mtrpol, DNA-directed RN 94.7 0.43 1.5E-05 51.0 14.1 100 370-471 126-231 (1134)
252 2ff4_A Probable regulatory pro 94.7 0.42 1.5E-05 46.0 13.3 112 343-469 121-233 (388)
253 1ya0_A SMG-7 transcript varian 94.7 0.2 6.8E-06 49.6 11.1 79 339-417 154-232 (497)
254 1zbp_A Hypothetical protein VP 94.6 0.75 2.6E-05 40.9 13.2 115 380-503 6-128 (273)
255 1ya0_A SMG-7 transcript varian 94.5 0.19 6.6E-06 49.7 10.5 80 372-451 153-232 (497)
256 4fhn_B Nucleoporin NUP120; pro 94.3 1.2 4.2E-05 49.6 17.6 145 342-493 817-989 (1139)
257 4b4t_R RPN7, 26S proteasome re 94.0 0.2 6.9E-06 49.0 9.4 97 405-503 131-236 (429)
258 4ady_A RPN2, 26S proteasome re 93.8 8.2 0.00028 41.2 33.2 185 349-544 386-588 (963)
259 3lvg_A Clathrin heavy chain 1; 93.6 1.8E-05 6.3E-10 75.7 -18.9 268 172-496 50-325 (624)
260 4b4t_S RPN3, 26S proteasome re 93.4 2.4 8.2E-05 41.8 15.5 126 338-471 232-374 (523)
261 4b4t_R RPN7, 26S proteasome re 93.2 0.51 1.7E-05 46.1 10.8 59 339-397 133-194 (429)
262 4b4t_S RPN3, 26S proteasome re 93.2 0.12 4.2E-06 50.7 6.2 74 475-550 231-304 (523)
263 4fhn_B Nucleoporin NUP120; pro 92.6 3 0.0001 46.5 17.1 120 376-501 817-964 (1139)
264 1wy6_A Hypothetical protein ST 83.2 15 0.00051 28.8 11.6 57 484-547 100-156 (172)
265 3lvg_A Clathrin heavy chain 1; 82.7 0.018 6E-07 55.7 -7.7 252 94-426 58-325 (624)
266 2wpv_A GET4, UPF0363 protein Y 81.2 18 0.00062 33.1 11.8 114 411-540 39-158 (312)
267 3lpz_A GET4 (YOR164C homolog); 80.9 35 0.0012 31.5 27.9 135 334-488 133-295 (336)
268 2wpv_A GET4, UPF0363 protein Y 77.6 42 0.0015 30.6 23.1 80 335-432 132-215 (312)
269 3ubw_A 14-3-3E, 14-3-3 protein 75.2 43 0.0015 29.5 14.8 58 239-296 35-94 (261)
270 4gq2_M Nucleoporin NUP120; bet 74.8 60 0.002 35.2 15.5 46 441-488 899-949 (950)
271 4gq2_M Nucleoporin NUP120; bet 74.4 51 0.0018 35.7 14.9 88 411-504 816-926 (950)
272 2qx5_A Nucleoporin NIC96; mRNA 73.6 32 0.0011 35.2 12.2 341 100-500 162-563 (661)
273 3esl_A Checkpoint serine/threo 73.4 22 0.00075 30.0 9.1 69 367-436 76-146 (202)
274 4b4t_O 26S proteasome regulato 72.4 53 0.0018 31.2 13.0 69 476-544 128-197 (393)
275 3esl_A Checkpoint serine/threo 69.4 33 0.0011 28.9 9.3 60 441-503 82-143 (202)
276 1wy6_A Hypothetical protein ST 68.7 40 0.0014 26.4 14.2 63 305-367 93-155 (172)
277 2br9_A 14-3-3E, 14-3-3 protein 68.4 59 0.002 28.2 14.3 56 239-294 9-66 (234)
278 3uzd_A 14-3-3 protein gamma; s 68.4 61 0.0021 28.3 15.0 60 239-298 8-69 (248)
279 4a1g_A Mitotic checkpoint seri 67.0 40 0.0014 27.0 8.9 83 105-209 50-134 (152)
280 2crb_A Nuclear receptor bindin 66.1 25 0.00085 25.1 6.5 35 477-511 17-51 (97)
281 3lpz_A GET4 (YOR164C homolog); 64.0 91 0.0031 28.7 26.4 25 178-202 37-61 (336)
282 1o9d_A 14-3-3-like protein C; 64.0 77 0.0026 27.9 15.1 57 239-295 12-72 (260)
283 2ijq_A Hypothetical protein; s 61.9 52 0.0018 26.6 8.8 67 178-264 34-104 (161)
284 2wvi_A Mitotic checkpoint seri 60.5 44 0.0015 27.1 8.2 83 106-210 46-130 (164)
285 3ax2_A Mitochondrial import re 56.2 32 0.0011 23.4 5.6 35 236-270 18-52 (73)
286 2w2u_A Hypothetical P60 katani 55.9 13 0.00043 26.3 3.8 17 383-399 31-47 (83)
287 4aez_C MAD3, mitotic spindle c 55.1 47 0.0016 28.5 7.8 81 106-208 100-182 (223)
288 2v6y_A AAA family ATPase, P60 54.8 13 0.00046 26.1 3.8 17 383-399 23-39 (83)
289 3ax2_A Mitochondrial import re 52.7 34 0.0012 23.3 5.3 29 342-370 22-50 (73)
290 3t5v_B Nuclear mRNA export pro 50.4 18 0.00062 35.1 5.2 72 478-549 179-254 (455)
291 2crb_A Nuclear receptor bindin 49.7 24 0.00084 25.1 4.2 29 176-204 15-43 (97)
292 3t5x_A PCI domain-containing p 47.4 29 0.00098 29.5 5.4 36 176-211 14-49 (203)
293 1om2_A Protein (mitochondrial 45.7 67 0.0023 23.2 6.2 35 235-269 20-54 (95)
294 2ijq_A Hypothetical protein; s 44.8 1.2E+02 0.0042 24.4 8.8 60 239-298 36-104 (161)
295 2rpa_A Katanin P60 ATPase-cont 41.6 29 0.001 24.0 3.6 26 374-399 15-40 (78)
296 3re2_A Predicted protein; meni 41.4 86 0.0029 29.0 7.5 69 474-544 254-324 (472)
297 3re2_A Predicted protein; meni 40.2 1.7E+02 0.0058 27.1 9.2 63 404-468 254-323 (472)
298 2cwy_A Hypothetical protein TT 40.0 79 0.0027 22.8 6.0 62 180-263 5-67 (94)
299 2w2u_A Hypothetical P60 katani 39.4 39 0.0013 23.7 4.2 28 177-204 20-47 (83)
300 3t5x_A PCI domain-containing p 36.8 64 0.0022 27.3 6.0 73 372-451 15-92 (203)
301 3t5v_B Nuclear mRNA export pro 36.2 91 0.0031 30.2 7.6 28 407-434 222-249 (455)
302 2v6y_A AAA family ATPase, P60 35.6 48 0.0016 23.2 4.2 28 177-204 12-39 (83)
303 4a5x_A MITD1, MIT domain-conta 33.7 54 0.0018 23.2 4.2 28 177-204 17-44 (86)
304 3iqu_A 14-3-3 protein sigma; s 33.7 2.3E+02 0.008 24.4 17.3 60 239-298 12-73 (236)
305 1om2_A Protein (mitochondrial 32.9 52 0.0018 23.8 3.9 28 342-369 25-52 (95)
306 3u84_A Menin; MLL, JUND, ledgf 32.4 3E+02 0.01 26.1 9.7 26 478-503 321-346 (550)
307 3u84_A Menin; MLL, JUND, ledgf 31.8 1.4E+02 0.0048 28.2 7.5 49 494-544 298-346 (550)
308 4aez_C MAD3, mitotic spindle c 31.4 2.5E+02 0.0084 24.0 9.8 33 436-470 147-179 (223)
309 4gq4_A Menin; tumor suppressor 28.5 2.5E+02 0.0085 26.6 8.5 65 403-469 260-331 (489)
310 2rpa_A Katanin P60 ATPase-cont 27.8 1.5E+02 0.0052 20.4 6.6 31 478-508 15-45 (78)
311 2ynq_A ESSB; membrane protein, 27.7 2.4E+02 0.0081 22.6 9.4 87 91-202 9-99 (161)
312 3lxu_X Tripeptidyl-peptidase 2 27.0 7.1E+02 0.024 28.0 13.4 31 352-382 1122-1152(1354)
313 1wfd_A Hypothetical protein 15 26.6 1.8E+02 0.006 20.8 7.9 25 485-509 25-49 (93)
314 2vkj_A TM1634; membrane protei 25.7 80 0.0027 22.2 3.7 34 174-207 51-84 (106)
315 4a5x_A MITD1, MIT domain-conta 25.2 1.8E+02 0.0062 20.4 8.4 30 480-509 21-50 (86)
316 4gq4_A Menin; tumor suppressor 25.0 2.5E+02 0.0086 26.6 7.9 50 493-544 282-331 (489)
317 3mv2_A Coatomer subunit alpha; 24.4 4.1E+02 0.014 24.2 15.1 29 272-300 117-145 (325)
318 1wfd_A Hypothetical protein 15 23.5 1.7E+02 0.0058 20.9 5.4 26 179-204 18-43 (93)
319 2npm_A 14-3-3 domain containin 22.4 4E+02 0.014 23.4 15.3 54 491-544 172-226 (260)
320 3bqo_A Telomeric repeat-bindin 21.0 2.1E+02 0.0071 23.9 5.9 40 274-313 122-161 (211)
321 2npm_A 14-3-3 domain containin 21.0 4.3E+02 0.015 23.2 16.0 56 239-294 32-92 (260)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-42 Score=344.04 Aligned_cols=367 Identities=20% Similarity=0.209 Sum_probs=351.3
Q ss_pred chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChh
Q 008705 155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNH 234 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~ 234 (557)
.++++.+.+.+.......|+++.++..+|.++...|++++|+..++++++.+|.+..+|..+
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l------------------ 73 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL------------------ 73 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH------------------
Confidence 34566666777777778999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY 314 (557)
Q Consensus 235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 314 (557)
|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+....+..++.++.
T Consensus 74 -------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 74 -------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp -------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred -------HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY 394 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 394 (557)
..++++++...+.+++..+|..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
++++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.. .|++++|+.+|++++...|.+
T Consensus 227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE--KGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCccc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSFTHL 554 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~a~ 554 (557)
+.++..+|.++...|++++|+..|+++++ ..|+++.++..+|.++.+.|++++|...|+++++++|. ...++
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~ 376 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAY 376 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTT-------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHH
Confidence 99999999999999999999999999998 78999999999999999999999999999999999865 44554
Q ss_pred hc
Q 008705 555 KN 556 (557)
Q Consensus 555 ~~ 556 (557)
.+
T Consensus 377 ~~ 378 (388)
T 1w3b_A 377 SN 378 (388)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.8e-42 Score=339.81 Aligned_cols=382 Identities=17% Similarity=0.150 Sum_probs=351.9
Q ss_pred HHHHHhhhhhhHHHHHHHHhhhcCCchh---hHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcC
Q 008705 95 LLAKSYFDCREYRRAAHVLRDQTGRRSV---FLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKN 171 (557)
Q Consensus 95 ~la~~~~~~~~y~~A~~~l~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 171 (557)
.+|..++..|+|++|+..++.+....|. .....+.... ..++ ++.+...+....+.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~--------------------~~~a~~~~~~a~~~ 62 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRR--------------------LDRSAHFSTLAIKQ 62 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--------------------HHHHHHHHHHHHhc
Confidence 3699999999999999999987643222 2222222111 1222 33344445556667
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705 172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH 251 (557)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~ 251 (557)
+|.++.+++.+|.++...|++++|+..|+++++.+|.+..+|..+ |.++...|++
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------~~~~~~~g~~ 117 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL-------------------------AAALVAAGDM 117 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHSCS
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH-------------------------HHHHHHcCCH
Confidence 899999999999999999999999999999999999999888776 9999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM 331 (557)
Q Consensus 252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (557)
++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+..++..++.++...++++++...+++++.
T Consensus 118 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
.+|..+.++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 277 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 491 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 491 (557)
|.++...|++++|+..|+++++..|.++.++..+|.++.. .|++++|+..|+++++..|+++.++..+|.++...|++
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 355 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE--QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705 492 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR 531 (557)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 531 (557)
++|+..|+++++ ..|+.+.++..+|.++..+|+
T Consensus 356 ~~A~~~~~~a~~-------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 356 QEALMHYKEAIR-------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh-------hCCCCHHHHHhHHHHHHHccC
Confidence 999999999998 799999999999999998874
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-40 Score=346.45 Aligned_cols=445 Identities=17% Similarity=0.124 Sum_probs=374.2
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS 168 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (557)
...+.+|.+|+..|++++|+.+|+++.. ..+......+. +....++.+++..+....... .... .....+...
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~---~~~~-~~~~~~~~~ 192 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF-CLVKLYDWQGALNLLGETNPF---RKDE-KNANKLLMQ 192 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH-HHHHTTCHHHHHHHHCSSCTT---C-----------CC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH-HHHHHhhHHHHHHHHhccCCc---cccc-ccccccccc
Confidence 4667899999999999999999998843 22222222222 223445666666654321100 0000 000011111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH-----Hhhc------CCChhHHH
Q 008705 169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI-----LNSL------NLNNHWMK 237 (557)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~-----~~~l------~~~~~~~~ 237 (557)
....+.++.+++.+|.++.+.|++++|+..|+++++.+|.++.++..++.+...... ...+ .....+..
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 222355688999999999999999999999999999999999999988775431111 1111 00111111
Q ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705 238 --DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA 315 (557)
Q Consensus 238 --~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 315 (557)
...++..|...|++++|+..|+++++. |.+..++..+|.++...|++++|+..|+++++.+|.+...+..++.++..
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence 122366778899999999999999887 78899999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHH
Q 008705 316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYR 395 (557)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 395 (557)
.++.+++..++..++...|.++.++..+|.+|...|++++|+.+|+++++.+|.+..+|..+|.++...|++++|++.|+
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----
Q 008705 396 RAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----- 470 (557)
Q Consensus 396 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----- 470 (557)
+++...|++..+|..+|.+|...|++++|+.+|+++++..|.++.+|..+|.++.. .|++++|+.+|+++++.
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN--KSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999988
Q ss_pred -CCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 471 -NDSE-AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 471 -~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
+|.+ ..++..+|.++...|++++|+..|+++++ ..|+++.++..+|.+|...|++++|..+|+++++++|.
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL-------LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 6665 78999999999999999999999999999 57999999999999999999999999999999999876
Q ss_pred ch
Q 008705 549 VS 550 (557)
Q Consensus 549 ~~ 550 (557)
+.
T Consensus 583 ~~ 584 (597)
T 2xpi_A 583 EI 584 (597)
T ss_dssp CH
T ss_pred Ch
Confidence 54
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=319.44 Aligned_cols=408 Identities=13% Similarity=0.025 Sum_probs=324.0
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhh
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELST 167 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 167 (557)
....+.+|.+++..|+|++|+..|++++. +.+......+..+. . .+++..+...+.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~-~--------------------~g~~~~A~~~~~~ 64 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYV-S--------------------VGDLKKVVEMSTK 64 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--------------------HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHH-H--------------------HhhHHHHHHHHHH
Confidence 36678889999999999999999998754 22221111111111 1 1223333344455
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705 168 SWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE 247 (557)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~ 247 (557)
..+.+|.++.+++.+|.++...|++++|+..|++++..+|.+......+.. .......
T Consensus 65 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 122 (514)
T 2gw1_A 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE----------------------RNLNKQA 122 (514)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH----------------------HHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH----------------------HHHHHHH
Confidence 555566777777777777777777777777777777766655433322200 0001111
Q ss_pred HhhhHHHHHHHHHH----------------------------------Hhc--------CCCCHHHHHHHHHHHHh---c
Q 008705 248 LRMHKESLTKYEYL----------------------------------QGT--------FSFSNYIQAQIAKAQYS---L 282 (557)
Q Consensus 248 ~~~~~~A~~~~~~~----------------------------------l~~--------~p~~~~~~~~la~~~~~---~ 282 (557)
.+...+++..++.+ ... .|.+...+..+|.+++. .
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (514)
T 2gw1_A 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202 (514)
T ss_dssp HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence 11111111100000 000 13447788888988887 8
Q ss_pred ccHHHHHHHHHHHHH-----h--C-------CCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705 283 REFEQVEVIFEELLR-----N--D-------PYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS 348 (557)
Q Consensus 283 g~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 348 (557)
|++++|+..|+++++ . + |.+...+..++.++...++++++...+.+++..+|. +.++..+|.++.
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~ 281 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA 281 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHH
Confidence 999999999999999 5 4 344567788899999999999999999999999999 999999999999
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYF 428 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 428 (557)
..|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHH---cCCHHHHHHHHH
Q 008705 429 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI------ALNQLAKLHHA---LGRDEEAAFYYK 499 (557)
Q Consensus 429 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~ 499 (557)
+++++..|.++.++..+|.++.. .|++++|+.+|++++...|.++. ++..+|.++.. .|++++|+.+|+
T Consensus 362 ~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 362 SEAKRKFPEAPEVPNFFAEILTD--KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999888755 99999999999 999999999999
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 500 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
++++ ..|.++.++..+|.++...|++++|..+|+++++++|.+.
T Consensus 440 ~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 440 KASK-------LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHH-------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 9999 6889999999999999999999999999999999986643
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.6e-36 Score=305.78 Aligned_cols=351 Identities=13% Similarity=0.114 Sum_probs=320.8
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHH
Q 008705 165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASA 244 (557)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~ 244 (557)
+......+|.++..++.+|..+...|++++|+..|+++++.+|.+..+|..+ |.+
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------~~~ 69 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------ATV 69 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------HHH
Confidence 4445566899999999999999999999999999999999999999888766 999
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---CcHHHH------------
Q 008705 245 YQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV---DDMDMY------------ 309 (557)
Q Consensus 245 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~------------ 309 (557)
+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++..+|.+. ..+..+
T Consensus 70 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 70 FLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887 665554
Q ss_pred HHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH
Q 008705 310 SNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA 389 (557)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 389 (557)
+.++...++++++...+.+++...|.++.++..+|.+|...|++++|+..|+++++.+|.++.++..+|.++...|++++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHH------------HHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHh
Q 008705 390 AIDAYRRAVDINPRDYRAWYGL------------GQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQ 453 (557)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~ 453 (557)
|+..|++++..+|++...+..+ |.++...|++++|+.+|++++...|.++. .+..+|.++..
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~-- 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK-- 307 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH--
Confidence 9999999999999998888766 99999999999999999999999999854 78899999999
Q ss_pred cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH--------
Q 008705 454 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH-------- 525 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-------- 525 (557)
.|++++|+..+++++...|+++.++..+|.++...|++++|+.+|+++++ ..|+++.++..++.+
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-------HNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999 789999999999954
Q ss_pred ----HHHcC-----CHHHHHHHHHH-HhccCCCc
Q 008705 526 ----CRAHG-----RFEEAEVYCTR-LLDYTGPV 549 (557)
Q Consensus 526 ----~~~~g-----~~~~A~~~~~~-al~~~~~~ 549 (557)
|...| +.+++.+.|++ +++..|+.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 44455 66788999987 78777654
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-36 Score=313.69 Aligned_cols=425 Identities=11% Similarity=0.056 Sum_probs=353.0
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS 168 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (557)
.....+++.+...|+|++|+.+|++... +........+..+. ..+..++ +...+...
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~--------------------A~~~~~~~ 143 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYC-CTGDYAR--------------------AKCLLTKE 143 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HTTCHHH--------------------HHHHHHHT
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHH-HcCcHHH--------------------HHHHHHHH
Confidence 3445679999999999999999998764 22211111111111 1223333 33334443
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH
Q 008705 169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL 248 (557)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~ 248 (557)
.. .+.++.+++.+|.++.+.|++++|+..|++. .|......... ... ......+......+.+|.+|...
T Consensus 144 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 144 DL-YNRSSACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNAN-----KLL-MQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp CG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred hc-cccchhHHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccc-----ccc-ccccccchhHHHHHHHHHHHHHc
Confidence 22 2678999999999999999999999999963 34431111000 000 00011233445556679999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHH--------------------------------------HHHhcccHHHHHH
Q 008705 249 RMHKESLTKYEYLQGTFSFSNYIQAQIAK--------------------------------------AQYSLREFEQVEV 290 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~--------------------------------------~~~~~g~~~~A~~ 290 (557)
|++++|+..|+++++.+|++..++..++. .+...|++++|+.
T Consensus 214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999999999999999888776644 3446799999999
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC
Q 008705 291 IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY 370 (557)
Q Consensus 291 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 370 (557)
.|+++++. |.+...+..++.++...++++++..++++++..+|.+..++..++.++...|++++|+..++++++..|.+
T Consensus 294 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (597)
T 2xpi_A 294 YLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372 (597)
T ss_dssp HHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence 99999987 67788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
..++..+|.+|...|++++|+..|+++++.+|.+..+|..+|.+|...|++++|+..|+++++..|.+..++..+|.++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch-HHHHHHHHHHHHHc
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM-VEALIFLATHCRAH 529 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~~ 529 (557)
. .|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|+++++..+. .+..|+. ..++..+|.++.+.
T Consensus 453 ~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 453 Q--LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK-TQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp H--HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCSGGGHHHHHHHHHHHHHT
T ss_pred H--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc-cccchhhHHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999999999999999999999999999984332 1235664 88999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCch
Q 008705 530 GRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 530 g~~~~A~~~~~~al~~~~~~~ 550 (557)
|++++|...|+++++.+|++.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCH
T ss_pred cCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999986543
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=2.3e-36 Score=313.36 Aligned_cols=402 Identities=12% Similarity=0.052 Sum_probs=301.7
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh---HHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF---LRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS 166 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (557)
....+.+|..++..|+|++|+..|++++...|.. +...+..+ ... +++..+...+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~--------------------g~~~~A~~~~~ 83 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY-IST--------------------GDLEKVIEFTT 83 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHH-HHH--------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHc--------------------CCHHHHHHHHH
Confidence 4667888999999999999999988875422111 11111100 011 11222233333
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHH
Q 008705 167 TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQ 246 (557)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~ 246 (557)
+....+|.++.+++.+|.++...|++++|+..|+ ++..+|.....+ ...+.
T Consensus 84 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~----------------------------~~~~~ 134 (537)
T 3fp2_A 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS----------------------------IEPML 134 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------------------------------CHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH----------------------------HHHHH
Confidence 3444445555555555555555555555555553 555555444322 12233
Q ss_pred HHhhhHHHHHHHHHHHhcCCCCH-------------------------------------HHHHHHHHH--------HHh
Q 008705 247 ELRMHKESLTKYEYLQGTFSFSN-------------------------------------YIQAQIAKA--------QYS 281 (557)
Q Consensus 247 ~~~~~~~A~~~~~~~l~~~p~~~-------------------------------------~~~~~la~~--------~~~ 281 (557)
..+...+|+..+++++...|... .....++.. ...
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34444555555555554422111 012222222 223
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCc-------HHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchH
Q 008705 282 LREFEQVEVIFEELLRNDPYRVDD-------MDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE 354 (557)
Q Consensus 282 ~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 354 (557)
.|++++|+..|+++++.+|.+... +..++.++...++++++...+.+++..+|. +.++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 468999999999999999998653 566677788889999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 355 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 434 (557)
+|+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHHc----------CCHHHHHHHH
Q 008705 435 QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI------ALNQLAKLHHAL----------GRDEEAAFYY 498 (557)
Q Consensus 435 ~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~~ 498 (557)
.|+++.++..+|.++.. .|++++|+..|++++...|.+.. .+..+|.++... |++++|+.+|
T Consensus 374 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTD--RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp CTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 99999999999999999 99999999999999998775543 467778999999 9999999999
Q ss_pred HHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 499 KKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 499 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
+++++ ..|+++.++..+|.++...|++++|..+|+++++++|....
T Consensus 452 ~~a~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 452 TKACE-------LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHH-------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999 68999999999999999999999999999999999876543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=6.9e-35 Score=285.54 Aligned_cols=322 Identities=14% Similarity=0.111 Sum_probs=304.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES 254 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A 254 (557)
++..++.+|.++...|++++|+..|+++++.+|.+..++..+ |.++...|++++|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------a~~~~~~~~~~~A 56 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------ATVFLAMGKSKAA 56 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH-------------------------HHHHHHccCHHHH
Confidence 467899999999999999999999999999999999888666 9999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCCcHHHH------------HHHHHhccch
Q 008705 255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDP---YRVDDMDMY------------SNVLYAKECF 319 (557)
Q Consensus 255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~------------~~~~~~~~~~ 319 (557)
+..++++++..|+++.++..+|.++...|++++|+..|+++++.+| .+...+..+ +.++...+++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 57 LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 9999999999999999999999999999999999999999999999 877777666 6888899999
Q ss_pred hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
+++...+.+++...|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHH------------HHHHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHhcCcHHHHHHH
Q 008705 400 INPRDYRAWY------------GLGQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 400 ~~p~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~~A~~~ 463 (557)
.+|++..++. .+|.++...|++++|+..|+++++..|+++. ++..+|.++.. .|++++|+.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK--DEKPVEAIRI 294 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--ccCHHHHHHH
Confidence 9999988765 3488899999999999999999999999875 46679999999 9999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530 (557)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 530 (557)
|++++..+|+++.++..+|.++...|++++|+.+|+++++ ..|+++.++..++.++...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-------HNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 78999999999998887654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=4.7e-35 Score=296.50 Aligned_cols=369 Identities=15% Similarity=0.147 Sum_probs=323.9
Q ss_pred CccccccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHH
Q 008705 82 VMEEDEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISL 161 (557)
Q Consensus 82 ~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (557)
....+|......+.+|.+++..|+|++|+.+|++++.
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~------------------------------------------- 54 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD------------------------------------------- 54 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------
Confidence 3445566678888999999999999999998887521
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHH
Q 008705 162 ERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFL 241 (557)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 241 (557)
..|.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 55 ---------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------- 100 (450)
T 2y4t_A 55 ---------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR------------------------- 100 (450)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------
T ss_pred ---------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH-------------------------
Confidence 1477889999999999999999999999999999999998888666
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHhcccHHHHHHHHHHHHHhCCCCCCcH
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSFSN---YIQAQI------------AKAQYSLREFEQVEVIFEELLRNDPYRVDDM 306 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 306 (557)
|.++...|++++|+..|++++...|++. .++..+ |.++...|++++|+..|++++...|.+...+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999887 666555 6679999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH---------
Q 008705 307 DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM--------- 377 (557)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------- 377 (557)
..++.++...++++++...+.+++..+|.++.++..+|.+|...|++++|+..|++++..+|++...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred ---hHHHHhcCCchHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 378 ---GHEYVEMKNTPAAIDAYRRAVDINPRDY----RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 378 ---~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
|.++...|++++|+..|++++...|.++ ..+..+|.++...|++++|+..+++++...|+++.+|..+|.++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999984 478999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHHHHHhhhcCC
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL------------HHALG-----RDEEAAFYYKK-DLERMEAEEREG 512 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~~~~~~~~ 512 (557)
. .|++++|+..|+++++++|+++.++..++.+ |...| +.+++.+.|++ +++ ..
T Consensus 341 ~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-------~~ 411 (450)
T 2y4t_A 341 I--EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-------WH 411 (450)
T ss_dssp H--TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-------SC
T ss_pred H--hcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-------hC
Confidence 9 9999999999999999999999999999955 44445 56778888887 555 33
Q ss_pred cch----------HHHHHHHHHHHHHcCCHHHHH
Q 008705 513 PNM----------VEALIFLATHCRAHGRFEEAE 536 (557)
Q Consensus 513 ~~~----------~~~~~~la~~~~~~g~~~~A~ 536 (557)
|+. ...+..++..|..+|+.+++.
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 332 335666777777777766544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=298.71 Aligned_cols=340 Identities=13% Similarity=0.054 Sum_probs=310.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES 254 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A 254 (557)
.+..++.+|..+...|++++|+..|++++..+| +..+|..+ |.++...|++++|
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~l-------------------------a~~~~~~g~~~~A 58 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNL-------------------------SACYVSVGDLKKV 58 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhH-------------------------HHHHHHHhhHHHH
Confidence 457899999999999999999999999999999 57666555 9999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------------------------------
Q 008705 255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVD------------------------------ 304 (557)
Q Consensus 255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------------------ 304 (557)
+..++++++.+|+++.++..+|.++...|++++|+..|++++...|.+..
T Consensus 59 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 138 (514)
T 2gw1_A 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA 138 (514)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999874422
Q ss_pred -------------------------------------------------cHHHHHHHHHh---ccchhHHHHHHHHHHh-
Q 008705 305 -------------------------------------------------DMDMYSNVLYA---KECFSALSYLAHRVFM- 331 (557)
Q Consensus 305 -------------------------------------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~- 331 (557)
.+...+.+... .++++.+...+.+++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 22333444444 7889999999999888
Q ss_pred ----h--C-------CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705 332 ----T--D-------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398 (557)
Q Consensus 332 ----~--~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 398 (557)
. . |..+.++..+|.++...|++++|+.+|+++++.+|. ..++..+|.++...|++++|+..+++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5 3 556788999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705 399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
..+|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|.++.. .|++++|+..+++++...|.++.++
T Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~ 375 (514)
T 2gw1_A 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR--ENKFDDCETLFSEAKRKFPEAPEVP 375 (514)
T ss_dssp TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT--TTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch------HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCc
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM------VEALIFLATHCRA---HGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~ 549 (557)
..+|.++...|++++|+.+|+++++. .|.+ ..++..+|.++.. .|++++|..+|+++++.+|.+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIEL-------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-------hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999983 3444 4489999999999 999999999999999998654
Q ss_pred h
Q 008705 550 S 550 (557)
Q Consensus 550 ~ 550 (557)
.
T Consensus 449 ~ 449 (514)
T 2gw1_A 449 E 449 (514)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=2.1e-33 Score=274.97 Aligned_cols=305 Identities=11% Similarity=0.026 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE 317 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 317 (557)
.+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...+
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhCC---CChhHHHHH------------HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHH
Q 008705 318 CFSALSYLAHRVFMTDK---YRPESCCII------------GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYV 382 (557)
Q Consensus 318 ~~~~~~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 382 (557)
+++++...+.+++..+| .++.++..+ |.++...|++++|+.+|+++++.+|.++.++..+|.++.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999 888888877 789999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHh
Q 008705 383 EMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI------------AMAQCYE 450 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~------------~l~~~~~ 450 (557)
..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+++++..|+++.++. .+|.++.
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988665 3488899
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAI----ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 526 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 526 (557)
. .|++++|+..+++++...|+++. ++..+|.++...|++++|+.+|+++++ ..|+++.++..+|.++
T Consensus 246 ~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 246 R--DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ-------MEPDNVNALKDRAEAY 316 (359)
T ss_dssp H--TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHH
T ss_pred H--cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCcccHHHHHHHHHHH
Confidence 9 99999999999999999999874 467799999999999999999999999 6899999999999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCchh
Q 008705 527 RAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 527 ~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
...|++++|..+|+++++++|.+..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999876543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.6e-33 Score=291.99 Aligned_cols=346 Identities=16% Similarity=0.117 Sum_probs=300.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES 254 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A 254 (557)
.+..++.+|..+...|++++|+..|+++++.+|.+..+|..+ |.++...|++++|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~g~~~~A 78 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI-------------------------SACYISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHH-------------------------HHHHHHcCCHHHH
Confidence 467899999999999999999999999999999999888766 9999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcH----------------------------
Q 008705 255 LTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDM---------------------------- 306 (557)
Q Consensus 255 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---------------------------- 306 (557)
+..|+++++.+|+++.++..+|.++...|++++|+..|+ ++...|......
T Consensus 79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 157 (537)
T 3fp2_A 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999999995 777666544321
Q ss_pred ----------------------------------------HHHH--------HHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705 307 ----------------------------------------DMYS--------NVLYAKECFSALSYLAHRVFMTDKYRPE 338 (557)
Q Consensus 307 ----------------------------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (557)
..+. ......+++.++...+++++..+|.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~ 237 (537)
T 3fp2_A 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237 (537)
T ss_dssp -CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH
T ss_pred ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch
Confidence 1111 1111224778889999999999999866
Q ss_pred -------HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 339 -------SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 339 -------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
++..+|.++...|++++|+.+|+++++.+|. ..++..+|.++...|++++|+..|++++..+|+++.++..+
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 316 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 4777889999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 491 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 491 (557)
|.++...|++++|+..|+++++.+|.++.++..+|.++.. .|++++|+.+|++++...|.++.++..+|.++...|++
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK--QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCch
Q 008705 492 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH----------GRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~ 550 (557)
++|+.+|+++++..+.. .........+..+|.++... |++++|+.+|+++++.+|.+.
T Consensus 395 ~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQ-EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999853321 11222344567788999999 999999999999999987554
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=269.37 Aligned_cols=297 Identities=13% Similarity=0.060 Sum_probs=263.9
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH
Q 008705 169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL 248 (557)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~ 248 (557)
....+.++..++.+|..+...|++++|+..|+++++.+|.+..++..+ +.++...
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------~~~~~~~ 69 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH-------------------------IGTLVEL 69 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHH-------------------------HHHHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH-------------------------HHHHHHh
Confidence 344578889999999999999999999999999999999998777555 8889999
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHH
Q 008705 249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR-EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAH 327 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (557)
|++++|+..++++++.+|.++.++..+|.++...| ++++|+..|++++..+|.
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------- 123 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-------------------------- 123 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT--------------------------
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc--------------------------
Confidence 99999999999999999999999999999999999 999999999999998886
Q ss_pred HHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH
Q 008705 328 RVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA 407 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 407 (557)
.+.++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..+++++..+|.+..+
T Consensus 124 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 195 (330)
T 3hym_B 124 --------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195 (330)
T ss_dssp --------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred --------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHH
Confidence 456677888889999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705 408 WYGLGQAYEMMHMPLYALHYFRKSVFLQ---------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 408 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
+..+|.++...|++++|+.++++++... |..+.++..+|.++.. .|++++|+.+|++++...|+++.++
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK--LKKYAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhCccchHHH
Confidence 9999999999999999999999998875 6667889999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH-HHcCCHH
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC-RAHGRFE 533 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 533 (557)
..+|.++...|++++|+.+|+++++ ..|+++.++..++.++ ...|+.+
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALG-------LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTT-------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHc-------cCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999988 7888999999999988 4566544
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-33 Score=281.85 Aligned_cols=349 Identities=12% Similarity=0.045 Sum_probs=280.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcc---------CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNS---------YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLAS 243 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~ 243 (557)
+..+..+..+|.++...|++++|++.|++++++ +|....+|. .+|.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~-------------------------nla~ 102 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG-------------------------NYAW 102 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHH-------------------------HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHH-------------------------HHHH
Confidence 444678889999999999999999999999875 344444443 4599
Q ss_pred HHHHHhhhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 244 AYQELRMHKESLTKYEYLQGT--------FSFSNYIQAQIAKAQYSL--REFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
+|..+|++++|+..+++++++ .+..+.++..+|.++... +++++|+.+|+++++.+|++++++..++.++
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999875 335678888888776654 5799999999999999999999998888886
Q ss_pred Hh---ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC
Q 008705 314 YA---KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN 386 (557)
Q Consensus 314 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 386 (557)
.. .++..++...+++++..+|.++.++..+|..+.. .|++++|+.++++++..+|....++..+|.+|...|+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence 55 4566778888999999999999999888876654 4678899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-------------------CChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM-------------------HMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447 (557)
Q Consensus 387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 447 (557)
+++|+..|+++++.+|++..++..+|.+|... +.+++|+..|++++..+|.+..++..+|.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~ 342 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHH
Confidence 99999999999999999999999999988643 34678999999999999999999999999
Q ss_pred HHhHHhcCcHHHHHHHHHHHHhcCCChHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHHH-----------------H
Q 008705 448 CYETEQLHMLEEAIKCYRRAANCNDSEAI---ALNQLAKL-HHALGRDEEAAFYYKKDLERM-----------------E 506 (557)
Q Consensus 448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al~~~-----------------~ 506 (557)
++.. .|++++|+.+|++++.+.|++.. ++..+|.+ +...|++++|+.+|+++++.. .
T Consensus 343 ~~~~--~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~ 420 (472)
T 4g1t_A 343 LHAL--ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420 (472)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHH--hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999887644 46667765 457899999999999998621 1
Q ss_pred hhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 507 AEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 507 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
.....+|.++.++..+|.+|...|++++|+++|+++++++|.
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 112346788899999999999999999999999999998754
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=259.70 Aligned_cols=283 Identities=19% Similarity=0.234 Sum_probs=261.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh
Q 008705 259 EYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE 338 (557)
Q Consensus 259 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (557)
...+...|+++.++..+|..++..|++++|+..|+++++.+|.+...+..++.++...++++++...+.+++..+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH
Confidence 34455567777888889999999999999999999999999998888888888888899999999999999999999999
Q ss_pred HHHHHHHHHhhhC-chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 339 SCCIIGNYYSLKG-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 339 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
+++.+|.++...| ++++|+.+|+++++.+|.+..+|..+|.++...|++++|+..|++++...|.+..++..+|.++..
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHc
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN---------DSEAIALNQLAKLHHAL 488 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~ 488 (557)
.|++++|+.+|+++++..|.++.++..+|.++.. .|++++|+.++++++... |..+.++..+|.++...
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ--NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 999999999999999975 66678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 489 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 489 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
|++++|+.+|+++++ ..|.++.++..+|.++...|++++|..+|+++++++|.+.
T Consensus 250 g~~~~A~~~~~~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 250 KKYAEALDYHRQALV-------LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp TCHHHHHHHHHHHHH-------HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred cCHHHHHHHHHHHHh-------hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 999999999999999 5788999999999999999999999999999999987654
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=272.36 Aligned_cols=365 Identities=14% Similarity=0.028 Sum_probs=274.8
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhc
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWK 170 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (557)
.....||.+++..|+|++|+..|++++..... . ....
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~---------------------~----------------------~~~~ 88 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQ---------------------E----------------------HADQ 88 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------H----------------------SGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------------c----------------------Cccc
Confidence 34557899999999999999998886321000 0 0011
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHH--
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQEL-- 248 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~-- 248 (557)
.+|.....+..+|.+|...|++++|+.+|++++++.+..... ..+........+|.++...
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~ 151 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP-----------------YRIESPELDCEEGWTRLKCGG 151 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS-----------------SCCCCHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc-----------------cchhhHHHHHHHHHHHHHHcc
Confidence 346677889999999999999999999999998764321100 0001111122336555554
Q ss_pred hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh----ccchhH
Q 008705 249 RMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSL---REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA----KECFSA 321 (557)
Q Consensus 249 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~ 321 (557)
+++++|+..|+++++++|+++.++..++.+++.. ++.++|+..|+++++++|.+..++..++..+.. .++.++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 5799999999999999999999999999886654 666889999999999999998888777765544 467788
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-----------------
Q 008705 322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM----------------- 384 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------------- 384 (557)
+...+++++..+|..+.++..+|.+|...|++++|+..|+++++.+|++..++..+|.+|...
T Consensus 232 a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~ 311 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311 (472)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988643
Q ss_pred --CCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHH---HHHHHHHHH-hHHhcCcHH
Q 008705 385 --KNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR---LWIAMAQCY-ETEQLHMLE 458 (557)
Q Consensus 385 --~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~~-~~~~~~~~~ 458 (557)
+.+++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++.+.|++.. ++..+|.+. .. .|+++
T Consensus 312 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 389 (472)
T 4g1t_A 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ--MKCED 389 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT--SSCHH
T ss_pred HHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--CCCHH
Confidence 34678999999999999999999999999999999999999999999999887644 456677654 45 89999
Q ss_pred HHHHHHHHHHhcC------------------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc
Q 008705 459 EAIKCYRRAANCN------------------------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 514 (557)
Q Consensus 459 ~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 514 (557)
+|+..|++++.+. |+++.++..+|.+|...|++++|+++|+++++ ..|.
T Consensus 390 ~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe-------~~~~ 462 (472)
T 4g1t_A 390 KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE-------SGSL 462 (472)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCC
Confidence 9999999998764 55667899999999999999999999999999 6788
Q ss_pred hHHHHHHHHH
Q 008705 515 MVEALIFLAT 524 (557)
Q Consensus 515 ~~~~~~~la~ 524 (557)
.|.+..++|.
T Consensus 463 ~p~a~~~~G~ 472 (472)
T 4g1t_A 463 IPSASSWNGE 472 (472)
T ss_dssp ----------
T ss_pred CCcHhhcCCC
Confidence 8888887773
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=6.7e-32 Score=265.61 Aligned_cols=299 Identities=15% Similarity=0.125 Sum_probs=261.9
Q ss_pred HHHHHhhhHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705 244 AYQELRMHKESLT-KYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC 318 (557)
Q Consensus 244 ~~~~~~~~~~A~~-~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 318 (557)
++...|++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++.+|.+..++..++.++...++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5666789999998 9999988887764 4588999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHH----------------HHhHHHH
Q 008705 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWT----------------LMGHEYV 382 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~ 382 (557)
++++...+.+++..+|.++.++..+|.++...|++++|+..|++++...|.+...+. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999999877665 466666
Q ss_pred hcCCchHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHH
Q 008705 383 EMKNTPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEA 460 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A 460 (557)
..|++++|+..|++++..+|. +..++..+|.++...|++++|+.+|++++...|+++.++..+|.++.. .|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN--GNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--cCCHHHH
Confidence 999999999999999999999 899999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHcCCHHHHH
Q 008705 461 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE----REGPNMVEALIFLATHCRAHGRFEEAE 536 (557)
Q Consensus 461 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~ 536 (557)
+.+|++++...|.++.++..+|.++...|++++|+.+|+++++..+... ...+....++..+|.++...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999999999999999999999999999999999999999999432210 112333899999999999999999999
Q ss_pred HHHHHHhcc
Q 008705 537 VYCTRLLDY 545 (557)
Q Consensus 537 ~~~~~al~~ 545 (557)
.+++++++.
T Consensus 351 ~~~~~~l~~ 359 (368)
T 1fch_A 351 AADARDLST 359 (368)
T ss_dssp HHHTTCHHH
T ss_pred HhHHHHHHH
Confidence 999887764
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=100.00 E-value=2.3e-31 Score=261.79 Aligned_cols=308 Identities=16% Similarity=0.127 Sum_probs=254.8
Q ss_pred hchhHHHHHH-HHhhhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhh
Q 008705 154 VNRELISLER-ELSTSWKNGTVD----PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNS 228 (557)
Q Consensus 154 ~~~~l~~~~~-~l~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~ 228 (557)
..+++..+.. .+.+.....|.+ ...++.+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------ 104 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL------------ 104 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------
Confidence 3345555555 555555555555 45688899999999999999999999999999888877665
Q ss_pred cCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHH
Q 008705 229 LNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDM 308 (557)
Q Consensus 229 l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 308 (557)
|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++...|.+...+..
T Consensus 105 -------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 105 -------------GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp -------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred -------------HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 8888899999999999999999999999999999999999999999999999999988887655433
Q ss_pred HHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--CHHHHHHHhHHHHhcCC
Q 008705 309 YSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--YLSAWTLMGHEYVEMKN 386 (557)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~ 386 (557)
...... .......+..++.++ ..|++++|+.+|+++++.+|. ...++..+|.++...|+
T Consensus 172 ~~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 172 AEEGAG------------------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp --------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhh------------------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 322100 000112223466666 899999999999999999999 89999999999999999
Q ss_pred chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705 387 TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466 (557)
Q Consensus 387 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 466 (557)
+++|+..|++++..+|+++.++..+|.++...|++++|+..|++++++.|+++.++..+|.++.. .|++++|+..|++
T Consensus 233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 310 (368)
T 1fch_A 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN--LGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHhcCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705 467 AANCNDSE-----------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507 (557)
Q Consensus 467 al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (557)
++.+.|++ ..++..+|.++..+|++++|..+++++++.+.+
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 99998887 889999999999999999999999988875443
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=100.00 E-value=1.5e-31 Score=262.84 Aligned_cols=279 Identities=14% Similarity=0.088 Sum_probs=245.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
.+...++.+|..+...|++++|+..|+++++.+|.+..+|..+ |.++...|++++
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------g~~~~~~g~~~~ 117 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL-------------------------GITQAENENEQA 117 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHH-------------------------HHHHHHCCCHHH
Confidence 4556699999999999999999999999999999999888766 999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705 254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333 (557)
Q Consensus 254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (557)
|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++..|.+...+..++
T Consensus 118 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------------------- 174 (365)
T 4eqf_A 118 AIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK----------------------- 174 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-----------------------
Confidence 999999999999999999999999999999999999999999999987655443321
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN--YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
..+..+..+|.++...|++++|+.+|+++++.+|. ++.++..+|.++...|++++|+..|+++++.+|++..+|..+
T Consensus 175 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 175 -GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12345566899999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------------hHHHHH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALN 479 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~ 479 (557)
|.++...|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|++++.+.|+ ...++.
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN--LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999998876 367899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 480 QLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.++.++..+|+.+.|....++.+.
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCcHHHHHHHHHhhHH
Confidence 999999999999999888777555
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.2e-30 Score=256.57 Aligned_cols=271 Identities=14% Similarity=0.048 Sum_probs=238.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC 318 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 318 (557)
+.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|.
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------------- 131 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN----------------- 131 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------------
Confidence 445999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH----------hHHHHhcCCch
Q 008705 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM----------GHEYVEMKNTP 388 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~ 388 (557)
++.++..+|.+|...|++++|+.+|+++++++|++..++..+ |.++...|+++
T Consensus 132 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 132 -----------------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHH
T ss_pred -----------------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHH
Confidence 467788899999999999999999999999999876666554 99999999999
Q ss_pred HHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705 389 AAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466 (557)
Q Consensus 389 ~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 466 (557)
+|+..|++++..+|. ++.++..+|.++...|++++|+.+|+++++..|+++.+|..+|.++.. .|++++|+.+|++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN--GDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence 999999999999999 899999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE-----GPNMVEALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
++...|+++.++..+|.++...|++++|+.+|+++++..+..... ......++..++.++..+|+.+.|.....+
T Consensus 273 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 273 ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999999999999999999999999954331111 011467899999999999999999888777
Q ss_pred Hhcc
Q 008705 542 LLDY 545 (557)
Q Consensus 542 al~~ 545 (557)
.+..
T Consensus 353 ~l~~ 356 (365)
T 4eqf_A 353 DLDV 356 (365)
T ss_dssp CCGG
T ss_pred hHHH
Confidence 5443
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.2e-29 Score=244.97 Aligned_cols=286 Identities=16% Similarity=0.161 Sum_probs=254.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
.++..++.+|..+...|++++|+..|+++++.+|.+..+|..+ |.++...|++++
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------------------------~~~~~~~~~~~~ 73 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL-------------------------GLTQAENEKDGL 73 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHHHHHcCCHHH
Confidence 3556789999999999999999999999999999999888666 999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705 254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333 (557)
Q Consensus 254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (557)
|+..++++++.+|.+..++..+|.++...|++++|+..|++++...|.+...+..+....
T Consensus 74 A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 133 (327)
T 3cv0_A 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD-------------------- 133 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------------------
T ss_pred HHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH--------------------
Confidence 999999999999999999999999999999999999999999999998766554432110
Q ss_pred CCChhHHHHH-HH-HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 334 KYRPESCCII-GN-YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 334 ~~~~~~~~~l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
+.. .....+ +. ++...|++++|+.+++++++.+|.+..++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus 134 ~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 212 (327)
T 3cv0_A 134 VDI-DDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212 (327)
T ss_dssp -------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHH-HHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 001 111134 44 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------------hHHHHH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALN 479 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~ 479 (557)
|.++...|++++|+..|+++++..|.++.++..+|.++.. .|++++|+..|++++...|. ++.++.
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 290 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN--MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999 899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705 480 QLAKLHHALGRDEEAAFYYKKDLERMEA 507 (557)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (557)
.+|.++...|++++|...++++++....
T Consensus 291 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 291 FFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999998885443
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=1.1e-27 Score=244.82 Aligned_cols=353 Identities=15% Similarity=0.121 Sum_probs=269.3
Q ss_pred chhhHHHHHHHhhh----hhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHH
Q 008705 89 EDSDFYLLAKSYFD----CREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERE 164 (557)
Q Consensus 89 ~~~~~~~la~~~~~----~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (557)
.....+.+|.+|+. .+++++|+..|+++..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~---------------------------------------------- 71 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE---------------------------------------------- 71 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------------------------------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----------------------------------------------
Confidence 34778888999988 8889988887776522
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHH
Q 008705 165 LSTSWKNGTVDPFGLYLYGIVLKD----KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYF 240 (557)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 240 (557)
..++.+++.+|.++.. .+++++|+.+|+++.+. .+..++..|
T Consensus 72 --------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L------------------------ 117 (490)
T 2xm6_A 72 --------QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNL------------------------ 117 (490)
T ss_dssp --------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH------------------------
T ss_pred --------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH------------------------
Confidence 1345566666666666 66777777777776653 344444433
Q ss_pred HHHHHHH----HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 008705 241 LASAYQE----LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDPYRVDDMDMYSNV 312 (557)
Q Consensus 241 la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (557)
|.+|.. .+++++|+..|+++.+. .++.++..+|.+|.. .+++++|+.+|+++++. .+..++..++.+
T Consensus 118 -g~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 118 -GVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM 192 (490)
T ss_dssp -HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred -HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 666665 56666777777766543 456666667766665 56677777777776664 345566666666
Q ss_pred HHh----ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-
Q 008705 313 LYA----KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE- 383 (557)
Q Consensus 313 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 383 (557)
+.. .++.+++..+++++... .++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.++..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHT
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCC
Confidence 665 56666666666666554 357788888988886 78899999999998875 567888899999988
Q ss_pred ---cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705 384 ---MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM-----HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 455 (557)
Q Consensus 384 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 455 (557)
.+++++|+..|+++.+. .++.+++.+|.+|... +++++|+.+|+++++. .++.+++.+|.+|.. .|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~--~g 342 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR--LG 342 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--SC
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh--CC
Confidence 88999999999998765 5678889999999887 8999999999998876 467888999999987 66
Q ss_pred ---cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705 456 ---MLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 528 (557)
Q Consensus 456 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 528 (557)
++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++ . .++.+++.+|.+|..
T Consensus 343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-------~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-------Q--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------T--TCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-------C--CCHHHHHHHHHHHHc
Confidence 788999999999886 568889999999998 8899999999999887 2 357888999999998
Q ss_pred ----cCCHHHHHHHHHHHhccCC
Q 008705 529 ----HGRFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 529 ----~g~~~~A~~~~~~al~~~~ 547 (557)
.+++++|..+|+++++.+|
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998874
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=1.4e-29 Score=247.04 Aligned_cols=260 Identities=8% Similarity=0.009 Sum_probs=241.4
Q ss_pred HHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008705 201 ESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQY 280 (557)
Q Consensus 201 ~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 280 (557)
.++..+|.+..+|..+ |.++...|++++|+..|++++.++|++..+|..+|.++.
T Consensus 88 ~ai~~~p~~~~a~~~l-------------------------g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~ 142 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYF-------------------------RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK 142 (382)
T ss_dssp SEECCCHHHHHHHHHH-------------------------HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhhCChhhHHHHHHH-------------------------HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH
Confidence 4677788888777655 999999999999999999999999999999999999999
Q ss_pred hccc-HHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHH
Q 008705 281 SLRE-FEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVY 359 (557)
Q Consensus 281 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 359 (557)
..|+ +++|+..|++++.++|. ++.+|..+|.++...|++++|+.+
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P~----------------------------------~~~a~~~~g~~~~~~g~~~eAl~~ 188 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQPK----------------------------------NYQVWHHRRVLVEWLRDPSQELEF 188 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HcccCHHHHHHHHHHHHHHCCC----------------------------------CHHHHHHHHHHHHHccCHHHHHHH
Confidence 9997 99999999999999887 567888999999999999999999
Q ss_pred HHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCChHHH-----HHHHHHHHh
Q 008705 360 FRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM-MHMPLYA-----LHYFRKSVF 433 (557)
Q Consensus 360 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~a~~ 433 (557)
|+++++++|++..+|+.+|.++..+|++++|+..|+++++++|++..+|+.+|.++.. .|.+++| +.+|++++.
T Consensus 189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 5555888 599999999
Q ss_pred cCCCCHHHHHHHHHHHhHHhcC--cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-
Q 008705 434 LQPNDSRLWIAMAQCYETEQLH--MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG---------RDEEAAFYYKKD- 501 (557)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a- 501 (557)
++|++..+|+.+|.++.. .| ++++|+..++++ +.+|+++.++..+|.+|..+| .+++|+.+|+++
T Consensus 269 l~P~~~~a~~~l~~ll~~--~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~ 345 (382)
T 2h6f_A 269 LVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345 (382)
T ss_dssp HSTTCHHHHHHHHHHHTT--TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHc--cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999998 88 699999999998 999999999999999999985 258999999998
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHHHc
Q 008705 502 LERMEAEEREGPNMVEALIFLATHCRAH 529 (557)
Q Consensus 502 l~~~~~~~~~~~~~~~~~~~la~~~~~~ 529 (557)
++ .+|.....|..++..+..+
T Consensus 346 ~~-------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 346 KE-------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HT-------TCGGGHHHHHHHHHHHHHH
T ss_pred HH-------hCchhHHHHHHHHHHHHHH
Confidence 77 7999999999999887754
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=2.4e-29 Score=245.42 Aligned_cols=257 Identities=11% Similarity=0.033 Sum_probs=240.4
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh
Q 008705 170 KNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR 249 (557)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~ 249 (557)
..+|.++.+++.+|.++...|++++|+..|+++++++|.+..+|..+ |.++...|
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~-------------------------g~~l~~~g 145 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFR-------------------------RVLLKSLQ 145 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTT
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHH-------------------------HHHHHHcc
Confidence 45678889999999999999999999999999999999999999766 99999999
Q ss_pred h-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHH
Q 008705 250 M-HKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHR 328 (557)
Q Consensus 250 ~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (557)
+ +++|+..|++++.++|++..+|..+|.++...|++++|+..|+++++++|.
T Consensus 146 ~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--------------------------- 198 (382)
T 2h6f_A 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--------------------------- 198 (382)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------------------------
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---------------------------
Confidence 7 999999999999999999999999999999999999999999999999887
Q ss_pred HHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-cCCchHH-----HHHHHHHHhhCC
Q 008705 329 VFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE-MKNTPAA-----IDAYRRAVDINP 402 (557)
Q Consensus 329 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~al~~~p 402 (557)
++.+|+.+|.++...|++++|+.+|+++++++|++..+|+.+|.++.. .|.+++| +.+|++++.++|
T Consensus 199 -------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P 271 (382)
T 2h6f_A 199 -------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271 (382)
T ss_dssp -------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred -------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence 567888899999999999999999999999999999999999999999 5665888 599999999999
Q ss_pred CChHHHHHHHHHHHHhC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC---------cHHHHHHHHHHH-Hhc
Q 008705 403 RDYRAWYGLGQAYEMMH--MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---------MLEEAIKCYRRA-ANC 470 (557)
Q Consensus 403 ~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---------~~~~A~~~~~~a-l~~ 470 (557)
++..+|+.+|.++...| ++++|+..++++ +.+|+++.++..+|.+|.. +| .+++|+.+|+++ +++
T Consensus 272 ~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~--~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 272 HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED--MLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH--HHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH--HhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988 699999999998 9999999999999999998 74 359999999999 999
Q ss_pred CCChHHHHHHHHHHHHHc
Q 008705 471 NDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 471 ~p~~~~~~~~la~~~~~~ 488 (557)
+|.....|..++..+..+
T Consensus 349 DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 349 DTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 999999999999887654
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.9e-29 Score=243.61 Aligned_cols=266 Identities=14% Similarity=0.091 Sum_probs=245.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC 318 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 318 (557)
+.+|..+...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------- 87 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----------------- 87 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-----------------
Confidence 456999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH--------------hH-HHHh
Q 008705 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM--------------GH-EYVE 383 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~ 383 (557)
++.++..+|.++...|++++|+..|++++..+|.+...+..+ +. ++..
T Consensus 88 -----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 88 -----------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTS
T ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence 456788899999999999999999999999999988877776 66 6888
Q ss_pred cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705 384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~ 463 (557)
.|++++|+..+++++..+|.+..++..+|.++...|++++|+.+++++++..|+++.++..+|.++.. .|++++|+..
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~ 228 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN--GNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc------------hHHHHHHHHHHHHHcCC
Q 008705 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN------------MVEALIFLATHCRAHGR 531 (557)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~ 531 (557)
|++++...|.++.++..+|.++...|++++|+.+|+++++ ..|. .+.++..+|.++...|+
T Consensus 229 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 229 YNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY-------MQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999 3455 78999999999999999
Q ss_pred HHHHHHHHHHHhccCC
Q 008705 532 FEEAEVYCTRLLDYTG 547 (557)
Q Consensus 532 ~~~A~~~~~~al~~~~ 547 (557)
+++|...++++++..|
T Consensus 302 ~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 302 PDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998887654
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=2e-26 Score=238.00 Aligned_cols=355 Identities=8% Similarity=0.021 Sum_probs=220.8
Q ss_pred hHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHH
Q 008705 157 ELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWM 236 (557)
Q Consensus 157 ~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~ 236 (557)
++..+...++++....|.++.+|..+|..+.+.|++++|+..|++++...| +...|..+
T Consensus 27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~-------------------- 85 (530)
T 2ooe_A 27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY-------------------- 85 (530)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH--------------------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH--------------------
Confidence 344444444444444444444444444444444444444444444444444 33333332
Q ss_pred HHHHHH-HHHHHHhhhHHHHH----HHHHHHhc---CCCCHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHhC
Q 008705 237 KDYFLA-SAYQELRMHKESLT----KYEYLQGT---FSFSNYIQAQIAKAQYS---------LREFEQVEVIFEELLRND 299 (557)
Q Consensus 237 ~~~~la-~~~~~~~~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~ 299 (557)
+ ......|++++|.+ .|++++.. +|.+..+|...+..... .|+++.|..+|++++. .
T Consensus 86 -----~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 86 -----LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp -----HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred -----HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 3 23345577776655 77777653 56677888887777655 7899999999999998 5
Q ss_pred CCCC--CcHHHHHHHHHhc-------------cchhHHHHHHHH------HHhh-----CCCC-------hhHHHHHHHH
Q 008705 300 PYRV--DDMDMYSNVLYAK-------------ECFSALSYLAHR------VFMT-----DKYR-------PESCCIIGNY 346 (557)
Q Consensus 300 p~~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~------~~~~-----~~~~-------~~~~~~la~~ 346 (557)
|... ..+..+....... +.+..+...+.. .+.. .|.. ...|......
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 6542 1222233322111 122222222221 1111 1111 1233222221
Q ss_pred Hhh----hCch----HHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-------cCCch-------HHHHHHHHHHh-hCCC
Q 008705 347 YSL----KGQH----EKSVVYFRRALKLDKNYLSAWTLMGHEYVE-------MKNTP-------AAIDAYRRAVD-INPR 403 (557)
Q Consensus 347 ~~~----~g~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~al~-~~p~ 403 (557)
... .++. .+++..|++++..+|.++.+|..+|..+.. .|+++ +|+..|++++. ..|+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 111 1122 366777888888888888888888877765 67776 77888888886 6787
Q ss_pred ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482 (557)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 482 (557)
+..+|..+|.++...|++++|...|+++++..|.++ .+|..+|.++.. .|++++|+.+|+++++..|.....+...+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR--AEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 788888888888888888888888888888777775 577778877777 77888888888888877776666666555
Q ss_pred HH-HHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705 483 KL-HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 483 ~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 547 (557)
.+ +...|++++|..+|+++++ ..|+++.++..++.++...|+.++|..+|++++...|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~-------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLK-------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH-------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCChhHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 55 3357788888888888877 4577777788888888788888888888888877643
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.96 E-value=1.2e-25 Score=232.22 Aligned_cols=416 Identities=12% Similarity=0.071 Sum_probs=311.5
Q ss_pred ccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh
Q 008705 87 EVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS 166 (557)
Q Consensus 87 ~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (557)
|........+++ +...|++++|..+|++++...|.....+..|...+. ..++...+...++
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~------------------~~~~~~~a~~~~~ 70 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI------------------KAKNYDKVEKLFQ 70 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH------------------HTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH------------------hcCCHHHHHHHHH
Confidence 344456667787 477899999999999998755543333222222110 1133455566677
Q ss_pred hhhcCCCCChhHHHHHHH-HHHhcCChHHHHH----HHHHHhcc---CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHH
Q 008705 167 TSWKNGTVDPFGLYLYGI-VLKDKGNENLART----VFVESVNS---YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKD 238 (557)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 238 (557)
+.+...| +..+|..++. .....|++++|.+ .|++++.. +|.+...|..++.+..... ...
T Consensus 71 ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~------~~~----- 138 (530)
T 2ooe_A 71 RCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE------AVG----- 138 (530)
T ss_dssp HHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSC------CCS-----
T ss_pred HHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCC------Ccc-----
Confidence 7777778 6778888885 4456788888776 88888754 5667777766633221100 000
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH--HHHHHHHHHH-------------HhcccHHHHHHHHHH------HHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSN--YIQAQIAKAQ-------------YSLREFEQVEVIFEE------LLR 297 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------~l~ 297 (557)
.+...|++++|..+|+++++ .|... .++...+... ...+++..|...+.. .++
T Consensus 139 -----~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 139 -----SYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp -----STTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred -----cHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 01237899999999999999 56543 2332222211 235678888877776 333
Q ss_pred h-----CCCCC-------CcHHHHHHHHHhc----cch----hHHHHHHHHHHhhCCCChhHHHHHHHHHhh-------h
Q 008705 298 N-----DPYRV-------DDMDMYSNVLYAK----ECF----SALSYLAHRVFMTDKYRPESCCIIGNYYSL-------K 350 (557)
Q Consensus 298 ~-----~p~~~-------~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~ 350 (557)
. .|... ..+..+....... ++. ..+...+++++...|.++.+|+.+|.++.. .
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhc
Confidence 2 22211 1222222111111 111 356778999999999999999999999986 7
Q ss_pred CchH-------HHHHHHHHHHh-cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHhCCh
Q 008705 351 GQHE-------KSVVYFRRALK-LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY-RAWYGLGQAYEMMHMP 421 (557)
Q Consensus 351 g~~~-------~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~ 421 (557)
|+++ +|+..|+++++ ..|++..+|..+|.++...|++++|...|+++++..|.++ .+|..+|.++...|++
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence 9987 99999999997 8999999999999999999999999999999999999985 6999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 422 LYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (557)
++|+..|+++++..|.....+...+.+ +.. .|++++|..+|+++++..|+++.++..++.++...|+.++|..+|++
T Consensus 373 ~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~--~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 373 KSGRMIFKKAREDARTRHHVYVTAALMEYYC--SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 999999999999999887777776665 446 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 501 DLERMEAEEREGPN----MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 501 al~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
++. ..|. ...+|...+......|+.+.+..++.++++..|.
T Consensus 451 al~-------~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLT-------SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHH-------SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHh-------ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 998 4333 3448888899999999999999999999999874
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=6.5e-28 Score=217.97 Aligned_cols=201 Identities=20% Similarity=0.214 Sum_probs=179.9
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705 414 AYEMM-----------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482 (557)
Q Consensus 414 ~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 482 (557)
++... |++++|+..|+++++++|+++.++..+|.++.. .|++++|+..|+++++++ +++.++..+|
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL--LGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 99999 999999999999999999999999999999999 999999999999999999 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
.++...|++++|+..|+++++ ..|+++.++..+|.++...|++++|+..|+++-.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~-------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALE-------QAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999 6899999999999999999999999999998754
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.96 E-value=6.1e-25 Score=224.48 Aligned_cols=323 Identities=15% Similarity=0.100 Sum_probs=291.9
Q ss_pred CCChhHHHHHHHHHHh----cCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH-
Q 008705 173 TVDPFGLYLYGIVLKD----KGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE- 247 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~- 247 (557)
+.++.+++.+|.++.. .+++++|+.+|+++++. .+..++..| |.+|..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~L-------------------------g~~y~~g 88 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVL-------------------------GLRYMNG 88 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH-------------------------HHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHH-------------------------HHHHHcC
Confidence 6789999999999999 99999999999999886 566766555 999998
Q ss_pred ---HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh----c
Q 008705 248 ---LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA----K 316 (557)
Q Consensus 248 ---~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~ 316 (557)
.+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..++.++.. .
T Consensus 89 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 89 EGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence 89999999999999875 588999999999998 89999999999999876 467888999999887 7
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCch
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTP 388 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~ 388 (557)
++.+++..+++++... .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .++++
T Consensus 165 ~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 8999999999998876 579999999999998 89999999999999875 568899999999997 89999
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc-----CcHHH
Q 008705 389 AAIDAYRRAVDINPRDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-----HMLEE 459 (557)
Q Consensus 389 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-----~~~~~ 459 (557)
+|+..|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. . +++++
T Consensus 241 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~--~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK--GAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH--CBTTBCCCHHH
T ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--CCCCCcCCHHH
Confidence 999999999876 468899999999999 99999999999999875 678999999999998 7 89999
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCH
Q 008705 460 AIKCYRRAANCNDSEAIALNQLAKLHHALG---RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRF 532 (557)
Q Consensus 460 A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~ 532 (557)
|+.+|+++.+. .++.+++.+|.+|...| ++++|+.+|+++++ . .++.+++.+|.+|.. .+++
T Consensus 315 A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-------~--~~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 315 AISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-------K--GEKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-------T--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-------C--CCHHHHHHHHHHHHcCCCCCCCH
Confidence 99999999986 45789999999999977 89999999999998 3 568899999999999 8999
Q ss_pred HHHHHHHHHHhccCC
Q 008705 533 EEAEVYCTRLLDYTG 547 (557)
Q Consensus 533 ~~A~~~~~~al~~~~ 547 (557)
++|..+|+++++..+
T Consensus 384 ~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 384 QQAAIWMRKAAEQGL 398 (490)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998753
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.3e-27 Score=217.62 Aligned_cols=241 Identities=15% Similarity=0.055 Sum_probs=222.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
..+..++.+|.++...|++++|+..|+++++.+ .+..++..+ |.++...|++++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~-------------------------~~~~~~~~~~~~ 56 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNR-------------------------AAAEYEKGEYET 56 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHH-------------------------HHHHHHcccHHH
Confidence 346789999999999999999999999999999 777777665 999999999999
Q ss_pred HHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705 254 SLTKYEYLQGTFSFS-------NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326 (557)
Q Consensus 254 A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (557)
|+..++++++..|.. +.++..+|.++...|++++|+..|++++...|.
T Consensus 57 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------------- 111 (258)
T 3uq3_A 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------------------- 111 (258)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------------
T ss_pred HHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------------------------
Confidence 999999999988876 789999999999999999999999999998874
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH
Q 008705 327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 406 (557)
+.++...|++++|+..+++++..+|....++..+|.++...|++++|+..|++++..+|.+..
T Consensus 112 -----------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 174 (258)
T 3uq3_A 112 -----------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174 (258)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -----------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence 245666788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC------CChHHHHHH
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN------DSEAIALNQ 480 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~ 480 (557)
++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+.+|++++++. |.+..++..
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA--VKEYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999999998 888888877
Q ss_pred HHHH
Q 008705 481 LAKL 484 (557)
Q Consensus 481 la~~ 484 (557)
++.+
T Consensus 253 l~~~ 256 (258)
T 3uq3_A 253 YYKA 256 (258)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7765
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.96 E-value=2.9e-27 Score=221.98 Aligned_cols=253 Identities=14% Similarity=0.076 Sum_probs=215.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKES 254 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A 254 (557)
++..++.+|.++...|++++|+..|+++++.+|.+..++..+ |.++...|++++|
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------~~~~~~~~~~~~A 56 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR-------------------------AVCYYELAKYDLA 56 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH-------------------------HHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-------------------------HHHHHHHhhHHHH
Confidence 456789999999999999999999999999999998877666 8899999999999
Q ss_pred HHHHHHHHhcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHH
Q 008705 255 LTKYEYLQGTFSFS----NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF 330 (557)
Q Consensus 255 ~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (557)
+..++++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.
T Consensus 57 ~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------- 106 (272)
T 3u4t_A 57 QKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT----------------------------- 106 (272)
T ss_dssp HHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------------------
T ss_pred HHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----------------------------
Confidence 999999998 4433 445899999999999999999999999998876
Q ss_pred hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH
Q 008705 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG 410 (557)
Q Consensus 331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 410 (557)
.+.++..+|.++...|++++|+.+|+++++.+|.+..++..+|......+++++|+..|+++++.+|++..++..
T Consensus 107 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 181 (272)
T 3u4t_A 107 -----RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181 (272)
T ss_dssp -----CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred -----cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 456778899999999999999999999999999999999999944445569999999999999999999999999
Q ss_pred HHHHHHHhCC---hHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHH
Q 008705 411 LGQAYEMMHM---PLYALHYFRKSVFLQ---PND-----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALN 479 (557)
Q Consensus 411 l~~~~~~~~~---~~~A~~~~~~a~~~~---p~~-----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 479 (557)
+|.++...|+ +++|+..|+++++.. |+. ..++..+|.++.. .|++++|+.+|+++++++|+++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI--NRDKVKADAAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCccHHHHHH
Confidence 9999999998 888999999998875 442 3678889999999 99999999999999999999999988
Q ss_pred HHHHHHHHcC
Q 008705 480 QLAKLHHALG 489 (557)
Q Consensus 480 ~la~~~~~~g 489 (557)
.++.+....+
T Consensus 260 ~l~~~~~~~~ 269 (272)
T 3u4t_A 260 GLKMKLEHHH 269 (272)
T ss_dssp HHC-------
T ss_pred Hhhhhhcccc
Confidence 8887765543
No 32
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=236.40 Aligned_cols=310 Identities=19% Similarity=0.140 Sum_probs=262.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
+.....++.+|.++...|++++|+..|+++++..|.+...... ..+.+|.++...|+++
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~ 64 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA---------------------IYSQLGNAYFYLHDYA 64 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHH---------------------HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHH---------------------HHHHHHHHHHHhcCHH
Confidence 4567789999999999999999999999999999998643211 1244699999999999
Q ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705 253 ESLTKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326 (557)
Q Consensus 253 ~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (557)
+|+..+++++.. .|....++..+|.++...|++++|+..+++++...|.....
T Consensus 65 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------- 123 (406)
T 3sf4_A 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------- 123 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---------------------
Confidence 999999999876 33456788999999999999999999999999876642110
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhCc--------------------hHHHHHHHHHHHhc------CcCCHHHHHHHhHH
Q 008705 327 HRVFMTDKYRPESCCIIGNYYSLKGQ--------------------HEKSVVYFRRALKL------DKNYLSAWTLMGHE 380 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 380 (557)
+..+.++..+|.+|...|+ +++|+.++++++.+ .+....++..+|.+
T Consensus 124 -------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 196 (406)
T 3sf4_A 124 -------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT 196 (406)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 1124577889999999999 99999999999887 34446689999999
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHH
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRDYR------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQC 448 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~ 448 (557)
+...|++++|+..+++++.+.+.... ++..+|.++...|++++|+.++++++.+.|.. ..++..+|.+
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 99999999999999999998765533 89999999999999999999999999887655 6788999999
Q ss_pred HhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHH
Q 008705 449 YETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 522 (557)
Q Consensus 449 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 522 (557)
+.. .|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|+++++.... ....+....++..+
T Consensus 277 ~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l 353 (406)
T 3sf4_A 277 YTL--LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE-VGDKSGELTARLNL 353 (406)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHH--hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hcCCcchhHHHHHH
Confidence 999 999999999999999874433 668999999999999999999999999985443 23356778899999
Q ss_pred HHHHHHcCCHHH
Q 008705 523 ATHCRAHGRFEE 534 (557)
Q Consensus 523 a~~~~~~g~~~~ 534 (557)
|.++...|+...
T Consensus 354 ~~~~~~~g~~~~ 365 (406)
T 3sf4_A 354 SDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHhhHhHH
Confidence 999999997733
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=3.9e-27 Score=212.85 Aligned_cols=200 Identities=18% Similarity=0.240 Sum_probs=150.5
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHH
Q 008705 266 SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGN 345 (557)
Q Consensus 266 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 345 (557)
|.++.++..+|.++...|++++|+..|+++++.+|. ++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------------------------------~~~a~~~lg~ 47 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----------------------------------DPEALYWLAR 47 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----------------------------------CHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHH
Confidence 566677777788888888888888888877777765 4567777788
Q ss_pred HHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-----------CCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 346 YYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-----------KNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 346 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
++...|++++|+..|+++++++|++..++..+|.++... |++++|+..|+++++++|++..++..+|.+
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 888888888888888888888888888888888888888 888888888888888888888888888888
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
+..+|++++|+..|+++++++ +++.++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE-DTPEIRSALAELYLS--MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred HHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 888888888888888888888 788888888888888 88888888888888888888888888888888888888888
Q ss_pred HHHHHHHH
Q 008705 495 AFYYKKDL 502 (557)
Q Consensus 495 ~~~~~~al 502 (557)
+..|+++-
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 88887654
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=2.5e-26 Score=215.57 Aligned_cols=253 Identities=19% Similarity=0.165 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhcc
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKE 317 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 317 (557)
.+..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++. .|.+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~------------- 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK------------- 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-------------
Confidence 345688888888888888888888888888888888888888888888888888888887 443221
Q ss_pred chhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705 318 CFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397 (557)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 397 (557)
..+.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++
T Consensus 72 -----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 72 -----------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp -----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred -----------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 135568899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc---HHHHHHHHHHHHhcC---
Q 008705 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM---LEEAIKCYRRAANCN--- 471 (557)
Q Consensus 398 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~---~~~A~~~~~~al~~~--- 471 (557)
++.+|.+..+++.+|......+++++|+..|+++++.+|+++.++..+|.++.. .|+ +++|+..|+++++..
T Consensus 135 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA--QDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--cCcchhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999555556699999999999999999999999999999999 998 899999999999875
Q ss_pred CC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcC
Q 008705 472 DS-----EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHG 530 (557)
Q Consensus 472 p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 530 (557)
|+ ...++..+|.+|...|++++|+.+|+++++ .+|+++.++-.++.+....+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA-------LDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHC-------
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCccHHHHHHHhhhhhcccc
Confidence 44 236899999999999999999999999999 68999999998887765543
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.95 E-value=4.5e-26 Score=215.27 Aligned_cols=278 Identities=10% Similarity=0.026 Sum_probs=242.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFS-NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 319 (557)
-..-.+..|+|++|+..++++....|++ .+....++++|...|+++.|+..++. .+|....++..++..+...++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3566788999999999999988888876 45778889999999999999988765 2555556677788888888899
Q ss_pred hHHHHHHHHHHhh--CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705 320 SALSYLAHRVFMT--DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397 (557)
Q Consensus 320 ~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 397 (557)
+++...++.++.. +|.++.+++.+|.++...|++++|+..|++ |.+..++..+|.++..+|++++|+..|+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998765 699999999999999999999999999988 889999999999999999999999999999
Q ss_pred HhhCCCChHHHHHHH--HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 398 VDINPRDYRAWYGLG--QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 398 l~~~p~~~~~~~~l~--~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
++.+|++.......+ .++...|++++|+..|+++++..|+++.+++.+|.++.. .|++++|+..|++++..+|+++
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA--QGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCH
Confidence 999998865444333 334455899999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 476 IALNQLAKLHHALGRDEE-AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 539 (557)
.++.++|.++...|+.++ +..+++++++ ..|+++.+. .+..+.+.|++|..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~-------~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD-------AHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------HCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------hCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999999999976 5689999998 689888754 4566667777776655
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-26 Score=212.46 Aligned_cols=250 Identities=16% Similarity=0.147 Sum_probs=224.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705 237 KDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK 316 (557)
Q Consensus 237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 316 (557)
..+.+|.++...|++++|+..|+++++.. .++.++..+|.++...|++++|+..|+++++..|.......
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK--------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH---------
Confidence 34556999999999999999999999999 88999999999999999999999999999998875422111
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
..+.++..+|.++...|++++|+.+|++++.+.|. +.++...|++++|+..+++
T Consensus 77 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 77 ------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHH
Confidence 12577889999999999999999999999999987 4677888899999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
++..+|.+..++..+|.++...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+.+|++++...|+++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~ 208 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK--LMSFPEAIADCNKAIEKDPNFVR 208 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 525 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 525 (557)
++..+|.++...|++++|+.+|+++++..+ .....|.+..++..++.+
T Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 209 AYIRKATAQIAVKEYASALETLDAARTKDA-EVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCh-hhcCCCchHHHHHHHHHh
Confidence 999999999999999999999999999422 222348888888877765
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.95 E-value=4.9e-26 Score=229.15 Aligned_cols=351 Identities=9% Similarity=-0.014 Sum_probs=183.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCC
Q 008705 94 YLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGT 173 (557)
Q Consensus 94 ~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 173 (557)
..+|..++..|++++|...|++... +
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~------------------------------------------------------~ 32 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAE------------------------------------------------------L 32 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------------H
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH------------------------------------------------------C
Confidence 4589999999999999998887522 1
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHh-
Q 008705 174 VDPFGLYLYGIVLKDKGNE---NLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELR- 249 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~- 249 (557)
.++.+++.+|.++...|+. ++|+.+|+++++. ++.++..| |.++...+
T Consensus 33 g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L-------------------------g~~~~~~~~ 84 (452)
T 3e4b_A 33 GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL-------------------------GRLLAAKPG 84 (452)
T ss_dssp TCCTGGGTCC-------------------------------CHHHH-------------------------HHHHHTC--
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH-------------------------HHHHHhCCC
Confidence 2234445555555555555 5666666665544 23333333 44333222
Q ss_pred ----hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCCcHHHHHHHHHhccchhH---
Q 008705 250 ----MHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRND-PYRVDDMDMYSNVLYAKECFSA--- 321 (557)
Q Consensus 250 ----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~--- 321 (557)
++++|+..|+++++. .++.+++.+|.+|...+...++...++...... +.++.+...++.++...+.++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 555566666665543 223355555555555544333322222222211 2234555555555555543322
Q ss_pred -HHHHHHHHHhhCCCChhHHHHHHHHHhhhC---chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc----CCchHHHHH
Q 008705 322 -LSYLAHRVFMTDKYRPESCCIIGNYYSLKG---QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM----KNTPAAIDA 393 (557)
Q Consensus 322 -~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~A~~~ 393 (557)
+..+.+.+.. .++.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+..
T Consensus 163 ~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 163 DVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 2222222222 23346666666666666 666666666666666666666666666666544 566666666
Q ss_pred HHHHHhhCCCChHHHHHHHHH-H--HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHH
Q 008705 394 YRRAVDINPRDYRAWYGLGQA-Y--EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAA 468 (557)
Q Consensus 394 ~~~al~~~p~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al 468 (557)
|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.+++.+|.+|..+ ...++++|+.+|+++.
T Consensus 240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh
Confidence 66665 5666666666666 3 3566666666666666643 3566666666666540 0016666666666665
Q ss_pred hcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008705 469 NCNDSEAIALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCT 540 (557)
Q Consensus 469 ~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~ 540 (557)
+.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+.||.+|.. ..++.+|..+|+
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR---------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT---------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh---------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 5666666666666655 2366666666666655 2345566666666653 346666666666
Q ss_pred HHhccCCC
Q 008705 541 RLLDYTGP 548 (557)
Q Consensus 541 ~al~~~~~ 548 (557)
++.+..++
T Consensus 383 ~A~~~g~~ 390 (452)
T 3e4b_A 383 LAKAQDTP 390 (452)
T ss_dssp HHHTTCCH
T ss_pred HHHHCCCH
Confidence 66665433
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=2e-25 Score=210.82 Aligned_cols=275 Identities=9% Similarity=-0.063 Sum_probs=220.1
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCH-HHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008705 184 IVLKDKGNENLARTVFVESVNSYPWNW-NAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQ 262 (557)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 262 (557)
...+..|+|.+|+..+++....+|.+. ++. ++++.+|...|++++|+..++..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~-------------------------~~l~r~yi~~g~~~~al~~~~~~- 60 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERD-------------------------VFLYRAYLAQRKYGVVLDEIKPS- 60 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHH-------------------------HHHHHHHHHTTCHHHHHHHSCTT-
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHH-------------------------HHHHHHHHHCCCHHHHHHHhccc-
Confidence 345667888888888877766666542 222 34477788888888887766542
Q ss_pred hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHH
Q 008705 263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRN--DPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESC 340 (557)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (557)
.|....++..++..+...|++++|+..+++++.. +|++...+..++.++...|+++++...+++ |.+++++
T Consensus 61 --~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~ 133 (291)
T 3mkr_A 61 --SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECM 133 (291)
T ss_dssp --SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHH
T ss_pred --CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHH
Confidence 4445666777777777778888888888887765 477777777778888888888887777666 6788999
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHh--HHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMG--HEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM 418 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 418 (557)
..+|.++...|++++|+..|+++++.+|++.......+ .++...|++++|+..|+++++.+|+++.+++.+|.++..+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999865544433 3444568999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705 419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE-AIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 497 (557)
Q Consensus 419 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 497 (557)
|++++|+..|++++..+|+++.++.++|.++.. .|++++ +..+++++++++|+++.+.. +..+.+.++++..-
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~--~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQH--LGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999976 57899999999999997653 34444455555443
No 39
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.1e-25 Score=224.74 Aligned_cols=280 Identities=15% Similarity=0.105 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
.+.+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.......
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------- 120 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN---------- 120 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc----------
Confidence 35579999999999999999999999999987 5789999999999999999999999987632110
Q ss_pred HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHhcCC-
Q 008705 314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL------DKNYLSAWTLMGHEYVEMKN- 386 (557)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~- 386 (557)
..+....++..+|.+|...|++++|+.+|++++.. .+....++..+|.++...|+
T Consensus 121 ------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (411)
T 4a1s_A 121 ------------------DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182 (411)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcc
Confidence 11224567888999999999999999999999988 55667789999999999999
Q ss_pred ----------------chHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-----
Q 008705 387 ----------------TPAAIDAYRRAVDIN------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS----- 439 (557)
Q Consensus 387 ----------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----- 439 (557)
+++|+..+++++.+. +....++..+|.++...|++++|+.+|++++++.+...
T Consensus 183 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 999999999998864 23356899999999999999999999999998876432
Q ss_pred -HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705 440 -RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512 (557)
Q Consensus 440 -~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (557)
.++..+|.++.. .|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++...... ...
T Consensus 263 ~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 339 (411)
T 4a1s_A 263 RRANSNLGNSHIF--LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDR 339 (411)
T ss_dssp HHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHHHHHH--CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CCh
Confidence 388999999999 999999999999999886643 6789999999999999999999999999854332 234
Q ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 513 PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 513 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
+....++..+|.++...|++++|..+|++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 556789999999999999999999999999998643
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=8.6e-26 Score=224.86 Aligned_cols=280 Identities=16% Similarity=0.147 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 008705 236 MKDYFLASAYQELRMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSN 311 (557)
Q Consensus 236 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (557)
...+.+|.++...|++++|+..|++++...|.++ .++..+|.++...|++++|+..|++++...+...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------- 81 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-------- 81 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--------
Confidence 3445679999999999999999999999999884 5788999999999999999999999987643211
Q ss_pred HHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcC
Q 008705 312 VLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMK 385 (557)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~ 385 (557)
..+..+.++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|
T Consensus 82 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 82 --------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 012235678889999999999999999999999886653 458999999999999
Q ss_pred C--------------------chHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH
Q 008705 386 N--------------------TPAAIDAYRRAVDI------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS 439 (557)
Q Consensus 386 ~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 439 (557)
+ +++|+..+++++.+ .+....++..+|.++...|++++|+.++++++++.+...
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 9 99999999999886 333466899999999999999999999999998865443
Q ss_pred ------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705 440 ------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507 (557)
Q Consensus 440 ------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (557)
.++..+|.++.. .|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|+++++....
T Consensus 222 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp CHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 388999999999 999999999999999876544 668999999999999999999999999985433
Q ss_pred hhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 508 EEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 508 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
. ...+....++..+|.++...|++++|..+|++++++.
T Consensus 300 ~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 300 L-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred c-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2245558899999999999999999999999999874
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=2.8e-25 Score=214.79 Aligned_cols=281 Identities=16% Similarity=0.142 Sum_probs=236.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 008705 237 KDYFLASAYQELRMHKESLTKYEYLQGTFSFSN----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNV 312 (557)
Q Consensus 237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (557)
..+..|..+...|++++|+..|+++++..|.++ .++..+|.++...|++++|+..+++++...+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------- 76 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---------- 76 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------
Confidence 345679999999999999999999999999984 678899999999999999999999998763311
Q ss_pred HHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCC
Q 008705 313 LYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKN 386 (557)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~ 386 (557)
...+..+.++..+|.++...|++++|+.++++++++.+.. ..++..+|.++...|+
T Consensus 77 ------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 77 ------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 0112235678889999999999999999999999886543 3488999999999999
Q ss_pred --------------------chHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC--
Q 008705 387 --------------------TPAAIDAYRRAVDIN------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-- 438 (557)
Q Consensus 387 --------------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-- 438 (557)
+++|+..+++++.+. +....++..+|.++...|++++|+.++++++++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998762 3335688999999999999999999999999875432
Q ss_pred ----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705 439 ----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 439 ----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (557)
..++..+|.++.. .|++++|+.++++++...+.. ..++..+|.++...|++++|+.+++++++.....
T Consensus 219 ~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 3388999999999 999999999999999875544 6689999999999999999999999999854332
Q ss_pred hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 509 EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 509 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
...+....++..+|.++...|++++|..++++++++.+.
T Consensus 297 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 -KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred -CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 234455778999999999999999999999999998653
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=2.1e-25 Score=222.73 Aligned_cols=281 Identities=18% Similarity=0.148 Sum_probs=240.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
+.....++.+|..+...|++++|+..|+++++..|.+...... ..+.+|.++...|+++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------~~~~lg~~~~~~g~~~ 103 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSA---------------------IYSQLGNAYFYLGDYN 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHH---------------------HHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHH---------------------HHHHHHHHHHHCCCHH
Confidence 3445678899999999999999999999999999998743211 1244599999999999
Q ss_pred HHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705 253 ESLTKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326 (557)
Q Consensus 253 ~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (557)
+|+..+++++.. .|....++..+|.++...|++++|+..|++++...+...
T Consensus 104 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------- 160 (411)
T 4a1s_A 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG----------------------- 160 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-----------------------
Confidence 999999999887 466778899999999999999999999999988643210
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhCc-----------------hHHHHHHHHHHHhcC------cCCHHHHHHHhHHHHh
Q 008705 327 HRVFMTDKYRPESCCIIGNYYSLKGQ-----------------HEKSVVYFRRALKLD------KNYLSAWTLMGHEYVE 383 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 383 (557)
..+....++..+|.+|...|+ +++|+.++++++++. +....++..+|.++..
T Consensus 161 -----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 235 (411)
T 4a1s_A 161 -----DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYL 235 (411)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 012235678889999999999 999999999998764 3345689999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhH
Q 008705 384 MKNTPAAIDAYRRAVDINPRDYR------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYET 451 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~ 451 (557)
.|++++|+..+++++.+.+.... ++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.++..
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 236 LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765433 88999999999999999999999999887644 6788999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 452 EQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
.|++++|+.++++++.+.+.. ..++..+|.+|...|++++|..+|+++++.
T Consensus 316 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 316 --LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999875432 458999999999999999999999999994
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=5.9e-25 Score=212.51 Aligned_cols=277 Identities=20% Similarity=0.168 Sum_probs=235.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
...++..|..+...|++++|+..|+++++..|.+...... ....+|.++...|++++|+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~~A~ 63 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSA---------------------IYSQLGNAYFYLHDYAKAL 63 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHH---------------------HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHH---------------------HHHHHHHHHHHcCCHHHHH
Confidence 4568899999999999999999999999999998643221 1234599999999999999
Q ss_pred HHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705 256 TKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV 329 (557)
Q Consensus 256 ~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (557)
..+++++.. .|....++..+|.++...|++++|+..++++++..+.....
T Consensus 64 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------ 119 (338)
T 3ro2_A 64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK------------------------ 119 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------------------------
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc------------------------
Confidence 999999876 34456788999999999999999999999999876543211
Q ss_pred HhhCCCChhHHHHHHHHHhhhCc--------------------hHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHh
Q 008705 330 FMTDKYRPESCCIIGNYYSLKGQ--------------------HEKSVVYFRRALKL------DKNYLSAWTLMGHEYVE 383 (557)
Q Consensus 330 ~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~ 383 (557)
+....++..+|.++...|+ +++|+.++++++.. .+....++..+|.++..
T Consensus 120 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 120 ----VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0124577789999999999 99999999999876 23345678999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhH
Q 008705 384 MKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYET 451 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~ 451 (557)
.|++++|+..+++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 999999999999999876543 3388999999999999999999999999886654 6788999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 452 EQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
.|++++|+.++++++...+.. ..++..+|.++...|++++|..+++++++
T Consensus 276 --~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 276 --LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999875433 45889999999999999999999999998
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=2.8e-25 Score=208.68 Aligned_cols=251 Identities=16% Similarity=0.046 Sum_probs=215.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTF----SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK 316 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 316 (557)
++......|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|++++..+|.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--------------- 75 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--------------- 75 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---------------
Confidence 3445556789999999999999874 456788999999999999999999999999998886
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|++
T Consensus 76 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 76 -------------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--
Q 008705 397 AVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-- 474 (557)
Q Consensus 397 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 474 (557)
+++.+|++......++.. ...|++++|+..+++++...|.+...+. ++.++.. .++.++|+..+++++...|..
T Consensus 137 a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 137 FYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLG--NISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp HHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTT--SSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHH--hcCHHHHHHHHHHHhcccccccc
Confidence 999999998766655544 6679999999999999999988876655 6666777 888999999999999887643
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 475 --AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539 (557)
Q Consensus 475 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 539 (557)
+.++..+|.++...|++++|+.+|+++++ ..|.+.. ..+.++...|++++|++.+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVA-------NNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 68899999999999999999999999998 6776543 3477888999999999887
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=7.5e-24 Score=186.14 Aligned_cols=174 Identities=20% Similarity=0.315 Sum_probs=168.5
Q ss_pred CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
.++.+|+.+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..+.+++...|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
+...++++.|+..+.+++...|.++.++..+|.++.. .|++++|+..|+++++++|.++.++..+|.+|..+|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS--MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchHH
Q 008705 495 AFYYKKDLERMEAEEREGPNMVE 517 (557)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~ 517 (557)
+.+|+++++ .+|.++.
T Consensus 161 ~~~~~~al~-------~~p~~a~ 176 (184)
T 3vtx_A 161 VKYFKKALE-------KEEKKAK 176 (184)
T ss_dssp HHHHHHHHH-------TTHHHHH
T ss_pred HHHHHHHHh-------CCccCHH
Confidence 999999999 6787653
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.2e-24 Score=198.56 Aligned_cols=209 Identities=17% Similarity=0.184 Sum_probs=99.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 241 LASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 241 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++.+|.
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------- 89 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS------------------- 89 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-------------------
Confidence 4455555555555555555555555555555555555555555555555555555444432
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh
Q 008705 321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI 400 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 400 (557)
.+.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++..
T Consensus 90 ---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 90 ---------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 23444455555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480 (557)
Q Consensus 401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 480 (557)
.|.+..++..+|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|+.+|++++..+|+++.++..
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY--KENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 555555555555555555555555555555555555555555555555555 555555555555555555555544444
Q ss_pred HHHHH
Q 008705 481 LAKLH 485 (557)
Q Consensus 481 la~~~ 485 (557)
++.+.
T Consensus 233 ~~~l~ 237 (243)
T 2q7f_A 233 KKLLG 237 (243)
T ss_dssp HTC--
T ss_pred HHHHH
Confidence 44443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=3.9e-24 Score=196.82 Aligned_cols=220 Identities=15% Similarity=0.121 Sum_probs=184.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
...+..++.+|..+...|++++|+..|+++++.+|.+..++..+ |.++...|+++
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l-------------------------a~~~~~~~~~~ 74 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF-------------------------ANLLSSVNELE 74 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHH-------------------------HHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHH-------------------------HHHHHHcCCHH
Confidence 34578899999999999999999999999999999998887666 99999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705 253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332 (557)
Q Consensus 253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (557)
+|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|.
T Consensus 75 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------- 123 (243)
T 2q7f_A 75 RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------------------------------- 123 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-------------------------------
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------------------------------
Confidence 9999999999999999999999999999999999999999999998886
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus 124 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 200 (243)
T 2q7f_A 124 ---NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200 (243)
T ss_dssp ---SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
.++...|++++|+.+|+++++.+|+++.++..++.+...
T Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 201 VTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999888776654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=1.1e-23 Score=195.07 Aligned_cols=210 Identities=16% Similarity=0.158 Sum_probs=200.3
Q ss_pred CCCC-hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 333 DKYR-PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 333 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
+|.. +.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 4444 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705 412 GQAYEMMHMPLYALHYFRKSVF--LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 489 (557)
|.++...|++++|+.+|++++. ..|.++.++..+|.++.. .|++++|+.+|++++...|.++.++..+|.++...|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ--MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999 888889999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 490 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 490 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
++++|+.+++++++ ..|....++..++.++...|++++|..+++++++..|.+..
T Consensus 190 ~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 190 EYVPARQYYDLFAQ-------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHT-------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHH-------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999998 78899999999999999999999999999999999876543
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=8e-24 Score=185.98 Aligned_cols=172 Identities=19% Similarity=0.283 Sum_probs=166.8
Q ss_pred CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 369 NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
+.+.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705 449 YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 528 (557)
Q Consensus 449 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 528 (557)
+.. .++++.|+..+.+++...|.++.++..+|.++..+|++++|+..|+++++ .+|.++.++..+|.++..
T Consensus 83 ~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 83 NFM--IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS-------IKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHH
T ss_pred HHH--cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-------hcchhhhHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999 689999999999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCc
Q 008705 529 HGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 529 ~g~~~~A~~~~~~al~~~~~~ 549 (557)
+|++++|+.+|+++++++|.+
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999998654
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=9.1e-25 Score=205.16 Aligned_cols=254 Identities=10% Similarity=-0.000 Sum_probs=203.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 008705 183 GIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQ 262 (557)
Q Consensus 183 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 262 (557)
+......|++++|+..|+++++..|.+.. ......+.+|.++...|++++|+..|++++
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDD---------------------ERAQLLYERGVLYDSLGLRALARNDFSQAL 70 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCc---------------------hhHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33445568899999999999987543321 111222445999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH
Q 008705 263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI 342 (557)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (557)
+.+|.++.++..+|.++...|++++|+..|+++++.+|. ++.++..
T Consensus 71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~ 116 (275)
T 1xnf_A 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT----------------------------------YNYAHLN 116 (275)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------CTHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc----------------------------------ccHHHHH
Confidence 999999999999999999999999999999999988876 3567778
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
+|.++...|++++|+.+|+++++.+|++.......+.. ...|++++|+..+++++...|.+...+. ++.++...++.+
T Consensus 117 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 194 (275)
T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHH
Confidence 88899999999999999999999999888666655544 5668999999999999998888766654 777778888889
Q ss_pred HHHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 423 YALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYY 498 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 498 (557)
+|+..+++++...|.. +.++..+|.++.. .|++++|+..|++++..+|.+... .+.++...|++++|+..+
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLS--LGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999999988877643 6788999999999 999999999999999998876543 367788888888888877
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=1.4e-22 Score=190.29 Aligned_cols=237 Identities=19% Similarity=0.216 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705 265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344 (557)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 344 (557)
.|.++.+++.+|.++...|++++|+.+|+++++ |. ++.+++.+|
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~----------------------------------~~~a~~~lg 45 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK----------------------------------ENSGCFNLG 45 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT----------------------------------CHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC----------------------------------CHHHHHHHH
Confidence 467888899999999999999999999999887 33 356777888
Q ss_pred HHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705 345 NYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416 (557)
Q Consensus 345 ~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 416 (557)
.+|.. .+++++|+.+|+++++.+ ++.+++.+|.++.. .+++++|+..|+++++.+ ++.+++.+|.+|.
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH
Confidence 88888 999999999999998875 78899999999999 999999999999998874 7889999999999
Q ss_pred H----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH---
Q 008705 417 M----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA--- 487 (557)
Q Consensus 417 ~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 487 (557)
. .+++++|+.+|+++++.. ++.++..+|.++..+. .+++++|+.+|+++++.. ++.+++.+|.+|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCS
T ss_pred cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC
Confidence 9 999999999999999875 6788889999887421 578999999999998874 57888999999999
Q ss_pred -cCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCchhhhh
Q 008705 488 -LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDYTGPVSFTHL 554 (557)
Q Consensus 488 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~a~ 554 (557)
.+++++|+.+|+++++ ..+ +.+++.+|.++.. .|++++|..+|+++++.+|++....+
T Consensus 198 ~~~~~~~A~~~~~~a~~-------~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 198 ATKNFKEALARYSKACE-------LEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp SCCCHHHHHHHHHHHHH-------TTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHh-------CCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998 433 7788999999998 99999999999999999876654443
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.92 E-value=1.4e-23 Score=211.16 Aligned_cols=314 Identities=14% Similarity=0.068 Sum_probs=239.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh---HHHHH
Q 008705 180 YLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH---KESLT 256 (557)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~---~~A~~ 256 (557)
..+|..+.+.|++++|+..|+++.+. .+..++..| |.+|...|+. ++|+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~L-------------------------g~~y~~~g~~~d~~~A~~ 59 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGL-------------------------ADIQVGTRDPAQIKQAEA 59 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTC-------------------------C-----------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHH-------------------------HHHHHccCCCCCHHHHHH
Confidence 56899999999999999999999875 345555444 8888888888 99999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhH---HHHHHHH
Q 008705 257 KYEYLQGTFSFSNYIQAQIAKAQYSLR-----EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSA---LSYLAHR 328 (557)
Q Consensus 257 ~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 328 (557)
.|+++++. ++.+++.+|.+++..+ ++++|+.+|+++++. .+..++..++.++...+.... +...+..
T Consensus 60 ~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 60 TYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp --------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99999876 6778999999777765 899999999999984 556799999999887665332 3333333
Q ss_pred HHhhCCCChhHHHHHHHHHhhhCchHH----HHHHHHHHHhcCcCCHHHHHHHhHHHHhcC---CchHHHHHHHHHHhhC
Q 008705 329 VFMTDKYRPESCCIIGNYYSLKGQHEK----SVVYFRRALKLDKNYLSAWTLMGHEYVEMK---NTPAAIDAYRRAVDIN 401 (557)
Q Consensus 329 ~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~ 401 (557)
+. .+..+.+++.+|.+|...+.+++ +..+++.+...+|. +++.+|.+|...| ++++|+..|+++.+..
T Consensus 135 a~--~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 135 WQ--AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HH--HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HH--HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 22 23468899999999999885544 44555555554444 9999999999999 9999999999999999
Q ss_pred CCChHHHHHHHHHHHHh----CChHHHHHHHHHHHhcCCCCHHHHHHHHHH-H--hHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 402 PRDYRAWYGLGQAYEMM----HMPLYALHYFRKSVFLQPNDSRLWIAMAQC-Y--ETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 402 p~~~~~~~~l~~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~--~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + .. .+++++|+.+|+++.+. .+
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~~--g~ 282 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE--LGDVEQMMKYLDNGRAA--DQ 282 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG--GCCHHHHHHHHHHHHHT--TC
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHC--CC
Confidence 99999999999999766 79999999999998 8999999999999 4 45 89999999999999875 47
Q ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcc
Q 008705 475 AIALNQLAKLHHALG-----RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 475 ~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 545 (557)
+.+++++|.+|. .| ++++|+.+|+++. +.++.+++.||.+|.. ..++++|..+|+++.+.
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 899999999998 56 9999999999865 5678899999999987 44999999999999986
Q ss_pred CCC
Q 008705 546 TGP 548 (557)
Q Consensus 546 ~~~ 548 (557)
..+
T Consensus 352 g~~ 354 (452)
T 3e4b_A 352 GQN 354 (452)
T ss_dssp TCT
T ss_pred ChH
Confidence 543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=3.3e-23 Score=188.09 Aligned_cols=210 Identities=18% Similarity=0.160 Sum_probs=198.4
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
.|.++.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-CChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705 413 QAYEMM-HMPLYALHYFRKSVF--LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489 (557)
Q Consensus 413 ~~~~~~-~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 489 (557)
.++... |++++|+.+++++++ ..|.+..++..+|.++.. .|++++|+.++++++...|.++.++..+|.++...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK--QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 999999 999999999999999 667778999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 490 RDEEAAFYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 490 ~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
++++|+.+++++++ ..| .++..+..++.++...|+.++|..+++.+.+.+|.+..
T Consensus 162 ~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 162 QLGDADYYFKKYQS-------RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp CHHHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999998 567 88888999999999999999999999999988866543
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=5e-24 Score=215.84 Aligned_cols=212 Identities=15% Similarity=0.166 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCch-HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH-EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
.+...+.......|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+|..+|.+|...|++++|+..|+++++
T Consensus 86 ~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 86 KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333444445556667889999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHh---------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc--------CcHHHHHH
Q 008705 400 INPRDYRAWYGLGQAYEMM---------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL--------HMLEEAIK 462 (557)
Q Consensus 400 ~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--------~~~~~A~~ 462 (557)
++|+ ..++..+|.++... |++++|+..|+++++++|+++.+|..+|.++.. . |++++|+.
T Consensus 166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALS 242 (474)
T ss_dssp TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHH
T ss_pred hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHhhccccchHHHHHH
Confidence 9998 79999999999999 999999999999999999999999999999999 9 99999999
Q ss_pred HHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 008705 463 CYRRAANCND---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYC 539 (557)
Q Consensus 463 ~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 539 (557)
+|++++.++| .++.+++++|.+|...|++++|+..|+++++ ..|+++.++..++.++...|++++|+..+
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA-------LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 8999999999999999999999999999999 68999999999999999999999999866
Q ss_pred HHH
Q 008705 540 TRL 542 (557)
Q Consensus 540 ~~a 542 (557)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 543
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=7.4e-24 Score=214.60 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=204.6
Q ss_pred HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccH-HHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHH
Q 008705 248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREF-EQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLA 326 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (557)
.+.+++++..+++.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------------------------- 135 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------------------------- 135 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-------------------------
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-------------------------
Confidence 45678889999999999999999999999999999999 9999999999999886
Q ss_pred HHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc---------CCchHHHHHHHHH
Q 008705 327 HRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM---------KNTPAAIDAYRRA 397 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a 397 (557)
++.++..+|.+|...|++++|+.+|+++++++|+ ..++..+|.++... |++++|+..|+++
T Consensus 136 ---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 136 ---------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp ---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 4678888999999999999999999999999999 79999999999999 9999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHh--------CChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHhHHhcCcHHHHHHHHHH
Q 008705 398 VDINPRDYRAWYGLGQAYEMM--------HMPLYALHYFRKSVFLQP---NDSRLWIAMAQCYETEQLHMLEEAIKCYRR 466 (557)
Q Consensus 398 l~~~p~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 466 (557)
++++|++..+|+.+|.+|... |++++|+.+|+++++++| .++.+|..+|.++.. .|++++|+..|++
T Consensus 206 l~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~ 283 (474)
T 4abn_A 206 VQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY--EESYGEALEGFSQ 283 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999 999999999999999 9999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 467 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 501 (557)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 501 (557)
++.++|+++.++..++.++...|++++|+..+.+.
T Consensus 284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999876553
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=6.5e-23 Score=189.92 Aligned_cols=209 Identities=20% Similarity=0.155 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHh
Q 008705 269 NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYS 348 (557)
Q Consensus 269 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 348 (557)
+.++..+|.++...|++++|+..|++++..+|. .+.++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~la~~~~ 82 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------------------------------SADAHAALAVVFQ 82 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------------------------------hHHHHHHHHHHHH
Confidence 556666777777777777777777777666554 3445566666666
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD--INPRDYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+.
T Consensus 83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 677777777777777777776666777777777777777777777777766 566666667777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705 427 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (557)
+|+++++..|.++.++..+|.++.. .|++++|+.++++++...|.+..++..++.++...|++++|..+++++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--- 237 (252)
T 2ho1_A 163 YFEKSLRLNRNQPSVALEMADLLYK--EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--- 237 (252)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---
Confidence 7777777777777777777777777 77777777777777777777677777777777777777777777777766
Q ss_pred hhhcCCcchHHHHH
Q 008705 507 AEEREGPNMVEALI 520 (557)
Q Consensus 507 ~~~~~~~~~~~~~~ 520 (557)
..|+++.+..
T Consensus 238 ----~~p~~~~~~~ 247 (252)
T 2ho1_A 238 ----LYPGSLEYQE 247 (252)
T ss_dssp ----HCTTSHHHHH
T ss_pred ----HCCCCHHHHH
Confidence 4555555443
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=1.4e-22 Score=183.95 Aligned_cols=214 Identities=18% Similarity=0.153 Sum_probs=160.3
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705 265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344 (557)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 344 (557)
.|.++.++..+|.++...|++++|+..|+++++.+|. ++.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------------------------~~~~~~~l~ 49 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------------------------------NELAWLVRA 49 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------------------CHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------------------------------chHHHHHHH
Confidence 4556677777777777777777777777777777665 345666677
Q ss_pred HHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-CCchHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCh
Q 008705 345 NYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-KNTPAAIDAYRRAVD--INPRDYRAWYGLGQAYEMMHMP 421 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~ 421 (557)
.++...|++++|+.+|++++..+|.+..++..+|.++... |++++|+..+++++. ..|.+..++..+|.++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 7777777777777777777777777777777777777777 777777777777777 5555567777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-SEAIALNQLAKLHHALGRDEEAAFYYKK 500 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 500 (557)
++|+.+|+++++..|.++.++..+|.++.. .|++++|+..+++++...| .++.++..++.++...|+.++|..+++.
T Consensus 130 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 130 GLAEAYLKRSLAAQPQFPPAFKELARTKML--AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 777777777777777777777777777777 7777778777777777777 7777777777777777777777777777
Q ss_pred HHHHHHhhhcCCcchHHHHHH
Q 008705 501 DLERMEAEEREGPNMVEALIF 521 (557)
Q Consensus 501 al~~~~~~~~~~~~~~~~~~~ 521 (557)
+.+ ..|+++.+...
T Consensus 208 ~~~-------~~p~~~~~~~~ 221 (225)
T 2vq2_A 208 LQA-------NFPYSEELQTV 221 (225)
T ss_dssp HHH-------HCTTCHHHHHH
T ss_pred HHH-------hCCCCHHHHHH
Confidence 766 45666655543
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.9e-22 Score=192.66 Aligned_cols=230 Identities=11% Similarity=0.072 Sum_probs=197.1
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHh-c
Q 008705 193 NLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH-------KESLTKYEYLQG-T 264 (557)
Q Consensus 193 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~~l~-~ 264 (557)
++|+..|++++..+|.+..+|..++.+.... +..+...|++ ++|+..|++++. .
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~------------------~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~ 94 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS------------------SKLLAEKGDMNNAKLFSDEAANIYERAISTL 94 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------chhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence 7899999999999999999999884433211 1111234554 999999999999 6
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChh-HHHHH
Q 008705 265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPE-SCCII 343 (557)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 343 (557)
.|++..+|..+|.++...|++++|...|+++++..|.+ +. +|..+
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~~~ 140 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----------------------------------PTLVYIQY 140 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----------------------------------THHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----------------------------------ccHHHHHH
Confidence 99999999999999999999999999999999988763 33 77788
Q ss_pred HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh-cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE-MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
|.++...|++++|+..|+++++.+|....+|...+..... .|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus 141 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 8888899999999999999999999888888776666443 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc---CC-CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 423 YALHYFRKSVFL---QP-NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 423 ~A~~~~~~a~~~---~p-~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
+|+..|++++.. .| ....+|..++..+.. .|++++|..+++++++..|++..
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~--~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESN--IGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcccccc
Confidence 999999999995 45 367899999999998 99999999999999999997653
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.7e-22 Score=184.15 Aligned_cols=185 Identities=18% Similarity=0.140 Sum_probs=162.1
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc-CCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK-NYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
+.++..++.+|.++...|++++|+.+|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34678888889999999999999999999998888 78888888999999999999999999999999998888899999
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--hHHHHHHHHH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDS-------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIALNQLAK 483 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~ 483 (557)
.+|..+|++++|+..|+++++++|+++ .++..+|.++.. .|++++|+..|+++++++|+ ++.++..+|.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ--AGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH--hccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999999888888 568888888888 89999999999999998888 8888888888
Q ss_pred HHHHcCCH---------------------------HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH
Q 008705 484 LHHALGRD---------------------------EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR 527 (557)
Q Consensus 484 ~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 527 (557)
++...|+. ++|+.+|+++++ ..|+++.+...++.+..
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT-------LSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHHH
Confidence 88888887 899999999998 68999999888887754
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=6.4e-22 Score=189.04 Aligned_cols=232 Identities=12% Similarity=0.003 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCch-------HHHHH
Q 008705 286 EQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQH-------EKSVV 358 (557)
Q Consensus 286 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~ 358 (557)
++|+..|++++..+|.+++.|..++.++...+. .+...|++ ++|+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~---------------------------~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK---------------------------LLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------------HHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhch---------------------------hhhhccchhhcccchHHHHH
Confidence 567777777777777655444444433321100 01123554 78888
Q ss_pred HHHHHHh-cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH-HHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 359 YFRRALK-LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR-AWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 359 ~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
.|+++++ ++|++..+|..+|.++...|++++|+..|++++++.|.++. +|..+|.++...|++++|+..|+++++..|
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 8888888 68888888888888888888888888888888888888776 788888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-ch
Q 008705 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP-NM 515 (557)
Q Consensus 437 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~ 515 (557)
.+..+|...+.+... ..|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+|++++... ...| ..
T Consensus 166 ~~~~~~~~~a~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----~l~p~~~ 240 (308)
T 2ond_A 166 TRHHVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----SLPPEKS 240 (308)
T ss_dssp CCTHHHHHHHHHHHH-TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS----SSCGGGC
T ss_pred CCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc----CCCHHHH
Confidence 777777766665432 15888888888888888888888888888888888888888888888888710 0134 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 516 VEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 516 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
..+|..++.++...|++++|...++++++..|.+
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 6777888888888888888888888888877653
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=1.4e-21 Score=183.41 Aligned_cols=237 Identities=17% Similarity=0.185 Sum_probs=203.5
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH----
Q 008705 172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE---- 247 (557)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~---- 247 (557)
+|.++.+++.+|.++...|++++|+.+|+++++ |.+..++..+ |.++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~l-------------------------g~~~~~g~~~ 54 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNL-------------------------GVLYYQGQGV 54 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHH-------------------------HHHHHHTSSS
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHH-------------------------HHHHHcCCCc
Confidence 478899999999999999999999999999998 7777777655 999999
Q ss_pred HhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705 248 LRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYS----LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS 323 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 323 (557)
.+++++|+..|+++++.. ++.++..+|.++.. .+++++|+.+|+++++.+
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------ 108 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------------ 108 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------------
Confidence 999999999999999875 88999999999999 999999999999998753
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhh----hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHH
Q 008705 324 YLAHRVFMTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYR 395 (557)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 395 (557)
++.++..+|.+|.. .+++++|+.+|+++++.+ +..++..+|.++.. .+++++|+..|+
T Consensus 109 ------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 109 ------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYD 174 (273)
T ss_dssp ------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 35677888888888 899999999999998875 67888899999988 899999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHH--hcCcHHHHHHHHHHHHh
Q 008705 396 RAVDINPRDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 396 ~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~--~~~~~~~A~~~~~~al~ 469 (557)
++++.+ ++.+++.+|.+|.. .+++++|+.+|+++++..| +.++..+|.++..+ ..+++++|+.+|+++++
T Consensus 175 ~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 175 KACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 998874 57888999999999 9999999999999998865 78888899888641 15788999999999999
Q ss_pred cCCChHHHHH
Q 008705 470 CNDSEAIALN 479 (557)
Q Consensus 470 ~~p~~~~~~~ 479 (557)
..|.++....
T Consensus 251 ~~~~~a~~~l 260 (273)
T 1ouv_A 251 LGAKGACDIL 260 (273)
T ss_dssp HTCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 9887655443
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=1.7e-22 Score=199.65 Aligned_cols=294 Identities=13% Similarity=0.115 Sum_probs=218.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcC---CCCHHHHHH----HHHHHHhcccHHHHH-----------HHHHHHHHhCCCCC
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTF---SFSNYIQAQ----IAKAQYSLREFEQVE-----------VIFEELLRNDPYRV 303 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~----la~~~~~~g~~~~A~-----------~~~~~~l~~~p~~~ 303 (557)
....+..+++++|...++++.+.. ..+..+... ..+.....++++.+. ..++++-. .|...
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~ 97 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARL 97 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCc
Confidence 444556667777777666664422 123333311 122222334444444 44444322 22222
Q ss_pred CcHH------HHHHHHHhccchhHHHHHHHHHHhh------CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC--
Q 008705 304 DDMD------MYSNVLYAKECFSALSYLAHRVFMT------DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-- 369 (557)
Q Consensus 304 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 369 (557)
+.+. ..+.++...++++++...+++++.. .+..+.++..+|.+|...|++++|+.++++++++.+.
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 2222 2556666677777777777776665 2225578899999999999999999999999988443
Q ss_pred -----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHh-----
Q 008705 370 -----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVF----- 433 (557)
Q Consensus 370 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----- 433 (557)
...++..+|.++...|++++|+..|++++++.+.. ..++.++|.+|..+|++++|+.+|+++++
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999886544 35899999999999999999999999999
Q ss_pred cC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 008705 434 LQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----DSEAIALNQLAKLHHALGR---DEEAAFYYKKDLER 504 (557)
Q Consensus 434 ~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 504 (557)
.+ |..+.++..+|.++.. .|++++|+.++++++.+. |.....+..+|.++...|+ +++|+.++++.-
T Consensus 258 ~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-- 333 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYK--LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-- 333 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--
T ss_pred ccchhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--
Confidence 45 7778899999999999 999999999999999873 3334456789999999999 666666665541
Q ss_pred HHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 505 MEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 505 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
..+....++..+|.+|...|++++|..+|++++++.
T Consensus 334 ------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 334 ------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 457778899999999999999999999999999874
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=1.7e-22 Score=212.31 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=167.7
Q ss_pred hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
..|++++++..+|.+|...|++++|+.+|+++++++|++..++.++|.++..+|++++|+..|+++++++|++..+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 491 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 491 (557)
|.++..+|++++|+..|+++++++|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++.++|.++..+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~--~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD--SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008705 492 EEAAFYYKKDLERME 506 (557)
Q Consensus 492 ~~A~~~~~~al~~~~ 506 (557)
++|.+.++++++...
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999998543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=7.4e-22 Score=195.00 Aligned_cols=238 Identities=11% Similarity=-0.006 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 008705 237 KDYFLASAYQELRMHKESLTKYEYLQGT---FSF---SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYS 310 (557)
Q Consensus 237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (557)
..+++|.++...|++++|+..|++++.. .++ ...++..+|.++...|++++|+..++++++..+......
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---- 180 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN---- 180 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch----
Confidence 3456899999999999999999999886 233 457899999999999999999999999999876543211
Q ss_pred HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhc
Q 008705 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEM 384 (557)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~ 384 (557)
+....++..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+|...
T Consensus 181 -----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 181 -----------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 1124577889999999999999999999999885543 25799999999999
Q ss_pred CCchHHHHHHHHHHh-----hC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHhHHh
Q 008705 385 KNTPAAIDAYRRAVD-----IN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-----PNDSRLWIAMAQCYETEQ 453 (557)
Q Consensus 385 ~~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~l~~~~~~~~ 453 (557)
|++++|+.+|+++++ .+ |....++..+|.++..+|++++|+.++++++.+. |.....+..+|.++..
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-- 315 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS-- 315 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS--
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--
Confidence 999999999999999 46 7778899999999999999999999999999874 3333346779999999
Q ss_pred cCc---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 454 LHM---LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 454 ~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
.|+ +++|+..+++. ...|....++..+|.+|...|++++|..+|+++++.
T Consensus 316 ~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 316 GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 998 88888888877 344555678999999999999999999999999984
No 65
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=3.8e-20 Score=197.49 Aligned_cols=394 Identities=13% Similarity=0.054 Sum_probs=281.7
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhh-----HHHHHHHHhh---cccchHHHHHhhCCCCCchhhchhHHHHH
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVF-----LRCYALYLAG---EKRKEEEMIELEGPLGKSNAVNRELISLE 162 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~-----l~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (557)
+..=...+.|...|++.+|+.+|++..-....| +... ..+.. +.++..+.
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl-Li~tAIkaD~~Rv~ey--------------------- 1043 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL-LILTAIKADRTRVMEY--------------------- 1043 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH-HHHHHHHhChhhHHHH---------------------
Confidence 455567899999999999999999987432211 1111 00000 11111111
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHH----HHhhhcHHHHhhcCCChhHHHH
Q 008705 163 RELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSEL----KSLCTSIDILNSLNLNNHWMKD 238 (557)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----~~~~~~~~~~~~l~~~~~~~~~ 238 (557)
+.++. . ...-..|.++...|.+++|..+|+++- .+..+...+ .+.....+....+..+.- +
T Consensus 1044 --I~kLd---~---~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aervn~p~v---W 1108 (1630)
T 1xi4_A 1044 --INRLD---N---YDAPDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERCNEPAV---W 1108 (1630)
T ss_pred --HHHhh---h---ccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhcCCHHH---H
Confidence 11111 1 112338999999999999999999974 223332222 223333333334444443 4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC 318 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 318 (557)
+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..+.. ..-..++..+...++
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcC
Confidence 46799999999999999999886 788899999999999999999999999999988542 222247777777777
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705 319 FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 398 (557)
.+.+..+. ...+...+..+|..+...|++++|+.+|.++ ..|..+|.++..+|++++|++.++++.
T Consensus 1183 leele~fI------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1183 LAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHH------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 77655442 2234456778999999999999999999986 478899999999999999999999884
Q ss_pred hhCC-------------------------CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHh
Q 008705 399 DINP-------------------------RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 453 (557)
Q Consensus 399 ~~~p-------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 453 (557)
...+ .+++.+..++..|...|.+++|+.++++++.+++.+..++..+|.++.+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 4322 123344566778888999999999999999999988889988888887755
Q ss_pred cCcHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHhhhcCCcchHHHHHHHH
Q 008705 454 LHMLEEAIKCYRRAANCND-----SEAIALNQLAKLHHALGRDEEAAFYYKKDLER-----MEAEEREGPNMVEALIFLA 523 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~la 523 (557)
-++..++++.|...+.+.| .+...|..+..+|.+-|+++.|+..+-..... .-...-..+.++++++...
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai 1408 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHH
Confidence 6788889999998888776 67788999999999999999999544333220 0011113577899999999
Q ss_pred HHHHHcC---------------CHHHHHHHHHH
Q 008705 524 THCRAHG---------------RFEEAEVYCTR 541 (557)
Q Consensus 524 ~~~~~~g---------------~~~~A~~~~~~ 541 (557)
..|...+ ++..+...|.+
T Consensus 1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 9998776 66666666663
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=9e-23 Score=214.31 Aligned_cols=174 Identities=20% Similarity=0.244 Sum_probs=168.3
Q ss_pred cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 008705 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM 445 (557)
Q Consensus 366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 445 (557)
..|+++.++.++|.++..+|++++|+..|+++++++|++..+++++|.+|..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705 446 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 525 (557)
Q Consensus 446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 525 (557)
|.++.. +|++++|+++|+++++++|+++.++.++|.+|..+|++++|+.+|+++++ .+|+++.++.++|.+
T Consensus 84 g~~l~~--~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-------l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 84 GNTLKE--MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK-------LKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHH
T ss_pred HHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHhhhhhH
Confidence 999999 99999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCC
Q 008705 526 CRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 526 ~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
+..+|++++|.+.+++++++.|.
T Consensus 155 l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhChh
Confidence 99999999999999999987643
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.89 E-value=7.6e-22 Score=179.79 Aligned_cols=208 Identities=10% Similarity=0.101 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705 236 MKDYFLASAYQELRMHKESLTKYEYLQGTFS-FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY 314 (557)
Q Consensus 236 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 314 (557)
...+.+|.++...|++++|+..|+++++..| .+..+++.+|.++...|++++|+..|+++++.+|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------- 74 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------------- 74 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-------------
Confidence 4556677777778888888888888877777 77777777778888888888888887777777664
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-------HHHHHHhHHHHhcCCc
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-------SAWTLMGHEYVEMKNT 387 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~ 387 (557)
++.++..+|.+|...|++++|+..|+++++.+|++. .++..+|.++...|++
T Consensus 75 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 75 ---------------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence 467788888888888999999999999988888887 5688888888888999
Q ss_pred hHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHH
Q 008705 388 PAAIDAYRRAVDINPR--DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 465 (557)
Q Consensus 388 ~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 465 (557)
++|+..|+++++++|+ +..+++.+|.+|...| ...++++..+.+.++..+. +..... .+.+++|+.+|+
T Consensus 134 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~--~~~~~~--~~~~~~A~~~~~ 204 (228)
T 4i17_A 134 EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYA--SEKAKA--DAAFKKAVDYLG 204 (228)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHH--HHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHH--HHHHHH--HHHHHHHHHHHH
Confidence 9999999999888888 8888888888887654 4456777777766655443 334455 678899999999
Q ss_pred HHHhcCCChHHHHHHHHHHHH
Q 008705 466 RAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 466 ~al~~~p~~~~~~~~la~~~~ 486 (557)
++++++|+++.+...++.+..
T Consensus 205 ~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 205 EAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999888887754
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=194.15 Aligned_cols=249 Identities=14% Similarity=0.107 Sum_probs=197.1
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHH
Q 008705 265 FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIG 344 (557)
Q Consensus 265 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 344 (557)
.|....++..+|.++...|++++|+.+|+++++...... ....+..+.++..+|
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--------------------------~~~~~~~~~~~~~la 76 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS--------------------------GHDHPDVATMLNILA 76 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------------------------CSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--------------------------CCCCHHHHHHHHHHH
Confidence 556678899999999999999999999999987522100 001223457788899
Q ss_pred HHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--------CCChHHH
Q 008705 345 NYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN--------PRDYRAW 408 (557)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~ 408 (557)
.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+..+++++++. |....++
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999999999999987 46667889999999999999999999999999874 5557789
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC-------
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------- 473 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------- 473 (557)
..+|.++...|++++|+.+|++++.. .|....++..+|.++.. .|++++|+.++++++...|.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK--QGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999988 66667789999999999 99999999999999976432
Q ss_pred --------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 474 --------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 474 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
....+..++..+...+.+.+|...++++.. ..|..+.++..+|.++...|++++|..+|++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV-------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC-------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 123445555566677778888888888887 68999999999999999999999999999999998
Q ss_pred CCC
Q 008705 546 TGP 548 (557)
Q Consensus 546 ~~~ 548 (557)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 754
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=6.1e-21 Score=187.99 Aligned_cols=238 Identities=12% Similarity=0.105 Sum_probs=201.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh
Q 008705 271 IQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK 350 (557)
Q Consensus 271 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 350 (557)
.++.+|..+...|++++|+..|++++...+...+ .+..+.++..+|.+|...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------~~~~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD----------------------------DIEKAEFHFKVAEAYYHM 154 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC----------------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC----------------------------hHHHHHHHHHHHHHHHHc
Confidence 5678899999999999999999999987553221 112356788999999999
Q ss_pred CchHHHHHHHHHHHhcCcC-------CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC------ChHHHHHHHHHHHH
Q 008705 351 GQHEKSVVYFRRALKLDKN-------YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR------DYRAWYGLGQAYEM 417 (557)
Q Consensus 351 g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 417 (557)
|++++|+.++++++++.+. ...++..+|.++...|++++|+..|++++++.+. ...++.++|.+|..
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999987543 2457889999999999999999999999986432 25678999999999
Q ss_pred hCChHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHH
Q 008705 418 MHMPLYALHYFRKSVF-----LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----DSEAIALNQLAKLHHA 487 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~ 487 (557)
+|++++|+.+|++++. .+|..+.++..+|.++.. .|++++|+.++++++.+. |.....+..++.++..
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK--AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999 778888999999999999 999999999999999974 3445567788889988
Q ss_pred cCC---HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 488 LGR---DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 488 ~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
.|+ +.+|+.++++.- ..+....++..+|.+|...|++++|..+|++++++.
T Consensus 313 ~~~~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKKN--------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp SCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888 667776666521 356677888999999999999999999999998764
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=1.1e-19 Score=170.08 Aligned_cols=242 Identities=11% Similarity=0.027 Sum_probs=210.7
Q ss_pred HHHHHHHhhh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccc
Q 008705 242 ASAYQELRMH-KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR--EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKEC 318 (557)
Q Consensus 242 a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 318 (557)
.......|.+ ++|+..+.+++.++|++..+|..++.++...| ++++++..+..++..+|.+..+|..
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~---------- 108 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY---------- 108 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH----------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH----------
Confidence 3344555555 68999999999999999999999999999999 9999999999999999986555444
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHH----hhh---CchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch--H
Q 008705 319 FSALSYLAHRVFMTDKYRPESCCIIGNYY----SLK---GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP--A 389 (557)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~ 389 (557)
.+.++ ... +++++++.++.++++.+|.+..+|...+.+....|.++ +
T Consensus 109 ------------------------R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~ 164 (306)
T 3dra_A 109 ------------------------RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAK 164 (306)
T ss_dssp ------------------------HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHH
T ss_pred ------------------------HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHH
Confidence 44444 333 68899999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCC------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH-HHH
Q 008705 390 AIDAYRRAVDINPRDYRAWYGLGQAYEMMHM------PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE-AIK 462 (557)
Q Consensus 390 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~-A~~ 462 (557)
+++++.++++.+|.+..+|...+.+....+. +++++.++.+++..+|.+..+|+.++.++.. .|+..+ ...
T Consensus 165 EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~--~~~~~~~~~~ 242 (306)
T 3dra_A 165 ELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER--FDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH--TTCCGGGGHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh--cCCChHHHHH
Confidence 9999999999999999999999999999887 8999999999999999999999999999998 888555 455
Q ss_pred HHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH
Q 008705 463 CYRRAANCN---DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 525 (557)
Q Consensus 463 ~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 525 (557)
++.+++.++ |.++.++..+|.++.+.|+.++|+++|+.+.+. .+|.....|...+..
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~------~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK------YNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCGGGHHHHHHHHHT
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc------cChHHHHHHHHHHhh
Confidence 777777766 788899999999999999999999999998862 589888888877654
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=5.9e-21 Score=177.78 Aligned_cols=197 Identities=18% Similarity=0.159 Sum_probs=177.1
Q ss_pred hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---
Q 008705 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD--- 404 (557)
Q Consensus 331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--- 404 (557)
...+.++..++.+|..+...|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|++++..+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4567789999999999999999999999999999999998 8999999999999999999999999999998865
Q ss_pred hHHHHHHHHHHHH--------hCChHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHhHHhcCcHHH
Q 008705 405 YRAWYGLGQAYEM--------MHMPLYALHYFRKSVFLQPNDSRLW-----------------IAMAQCYETEQLHMLEE 459 (557)
Q Consensus 405 ~~~~~~l~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~ 459 (557)
..+++.+|.++.. .|++++|+..|+++++..|+++.+. +.+|.++.. .|++++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~ 166 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER--RELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHH
Confidence 6789999999999 9999999999999999999986655 888999999 999999
Q ss_pred HHHHHHHHHhcCCC---hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhhhcCCcch---HHHHHHHH
Q 008705 460 AIKCYRRAANCNDS---EAIALNQLAKLHHAL----------GRDEEAAFYYKKDLERMEAEEREGPNM---VEALIFLA 523 (557)
Q Consensus 460 A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~la 523 (557)
|+..|++++...|+ .+.+++.+|.+|..+ |++++|+..|+++++ ..|++ ..+...++
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ-------IFPDSPLLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH-------HCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH-------HCCCChHHHHHHHHHH
Confidence 99999999999988 577999999999977 899999999999999 45555 56777788
Q ss_pred HHHHHcCCHHHHH
Q 008705 524 THCRAHGRFEEAE 536 (557)
Q Consensus 524 ~~~~~~g~~~~A~ 536 (557)
.++...|+++++.
T Consensus 240 ~~~~~~~~~~~~~ 252 (261)
T 3qky_A 240 RARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHhhhhh
Confidence 8888887776544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=6.4e-22 Score=189.13 Aligned_cols=249 Identities=11% Similarity=0.022 Sum_probs=174.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHH
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNS--------YPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLA 242 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la 242 (557)
..|..+.+++.+|.++...|++++|+..|+++++. .|....++ ..+|
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~la 76 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML-------------------------NILA 76 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHH-------------------------HHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-------------------------HHHH
Confidence 45777889999999999999999999999999984 33333333 4459
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705 243 SAYQELRMHKESLTKYEYLQGTF--------SFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY 314 (557)
Q Consensus 243 ~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 314 (557)
.++...|++++|+..+++++... |....++..+|.++...|++++|+.+|+++++.....
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------ 144 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------ 144 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------
Confidence 99999999999999999999873 5567789999999999999999999999998764100
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCC
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKN 386 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~ 386 (557)
.....+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|+
T Consensus 145 --------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 210 (311)
T 3nf1_A 145 --------------LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210 (311)
T ss_dssp --------------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred --------------cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence 00011224567788999999999999999999999988 66677788899999999999
Q ss_pred chHHHHHHHHHHhhCCC---------Ch------HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 387 TPAAIDAYRRAVDINPR---------DY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 387 ~~~A~~~~~~al~~~p~---------~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
+++|+..+++++...|. .. ..+..++..+...+.+.+|+..++++....|..+.++..+|.++..
T Consensus 211 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~ 290 (311)
T 3nf1_A 211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR 290 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH
Confidence 99999999998875432 11 2222333333444445555555555555555555555556666655
Q ss_pred HhcCcHHHHHHHHHHHHhcCC
Q 008705 452 EQLHMLEEAIKCYRRAANCND 472 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p 472 (557)
.|++++|+.+|++++++.|
T Consensus 291 --~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 291 --QGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --HTCHHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHHhh
Confidence 5666666666655555443
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.8e-20 Score=174.54 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=138.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---HHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHH
Q 008705 171 NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWN---WNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQE 247 (557)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~ 247 (557)
..|.++..++.+|..+...|++++|+..|+++++.+|.+ ..++..+ |.++..
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l-------------------------g~~~~~ 64 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYL-------------------------ARAYYQ 64 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHH-------------------------HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHH-------------------------HHHHHH
Confidence 358889999999999999999999999999999999998 6666555 999999
Q ss_pred HhhhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHh--------cccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Q 008705 248 LRMHKESLTKYEYLQGTFSFS---NYIQAQIAKAQYS--------LREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAK 316 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 316 (557)
.|++++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~ 144 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR 144 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence 999999999999999998854 6789999999999 99999999999999999998765544433221111
Q ss_pred cchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC---CHHHHHHHhHHHHhc---------
Q 008705 317 ECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN---YLSAWTLMGHEYVEM--------- 384 (557)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~--------- 384 (557)
+. ....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.++..+
T Consensus 145 ~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~ 207 (261)
T 3qky_A 145 AK-----------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQ 207 (261)
T ss_dssp HH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGH
T ss_pred HH-----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcc
Confidence 10 1122445555555555555555555555555554 234555555555544
Q ss_pred -CCchHHHHHHHHHHhhCCCC
Q 008705 385 -KNTPAAIDAYRRAVDINPRD 404 (557)
Q Consensus 385 -~~~~~A~~~~~~al~~~p~~ 404 (557)
|++++|+..|+++++.+|++
T Consensus 208 ~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 208 PERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHCCCC
Confidence 44455555555555555544
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=7.7e-21 Score=200.97 Aligned_cols=205 Identities=9% Similarity=-0.107 Sum_probs=178.1
Q ss_pred hcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH--------HhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCC
Q 008705 263 GTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELL--------RNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDK 334 (557)
Q Consensus 263 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (557)
..+|+++.+.+..+ ...|++++|+..|++++ +.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p---------------------------------- 430 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS---------------------------------- 430 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT----------------------------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc----------------------------------
Confidence 45788887777766 78899999999999998 5545
Q ss_pred CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008705 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA 414 (557)
Q Consensus 335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 414 (557)
.+++++..+|.++...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++++|.+
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAAT 510 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
+..+|++++ +..|+++++++|+++.+++++|.++.. .|++++|+..|+++++++|++..++.++|.++...++.+++
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA--EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH--cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence 999999999 999999999999999999999999999 99999999999999999999999999999999887775555
Q ss_pred -HHHHHHHHHHHHh
Q 008705 495 -AFYYKKDLERMEA 507 (557)
Q Consensus 495 -~~~~~~al~~~~~ 507 (557)
...++++++.+..
T Consensus 588 ~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 588 TEEQIRDAARRVEA 601 (681)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhh
Confidence 5666666665544
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.86 E-value=1.2e-19 Score=169.71 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=193.3
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHhhhC--chHHHHHHHHHHHhcCcCCHHHHHHHhHHH----Hhc---CCchHHHH
Q 008705 322 LSYLAHRVFMTDKYRPESCCIIGNYYSLKG--QHEKSVVYFRRALKLDKNYLSAWTLMGHEY----VEM---KNTPAAID 392 (557)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----~~~---~~~~~A~~ 392 (557)
+..+...++..+|....+|...+.++...| ++++++.++.+++..+|++..+|...+.++ ... +++++++.
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 333334444444456778888888888888 999999999999999999999999999999 667 78999999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCChH--HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc------HHHHHHHH
Q 008705 393 AYRRAVDINPRDYRAWYGLGQAYEMMHMPL--YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM------LEEAIKCY 464 (557)
Q Consensus 393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~------~~~A~~~~ 464 (557)
++.++++.+|++..+|...+.+....|.++ +++.++.++++.+|.+..+|...+.++.. .+. ++++++++
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~--l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS--KKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS--SGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccchhhhHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999998 887 99999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 465 RRAANCNDSEAIALNQLAKLHHALGRDEEAA-FYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
.+++..+|.+..+|+.++.++...|+..+++ .+++++++. . ...+.++.++..+|.++.+.|+.++|+++|+.+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-~---~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL-E---KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG-G---GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc-c---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999865544 455555541 0 1237889999999999999999999999999999
Q ss_pred c-cCCC
Q 008705 544 D-YTGP 548 (557)
Q Consensus 544 ~-~~~~ 548 (557)
+ .+|.
T Consensus 286 ~~~Dpi 291 (306)
T 3dra_A 286 SKYNPI 291 (306)
T ss_dssp HTTCGG
T ss_pred hccChH
Confidence 6 6754
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.86 E-value=6.5e-20 Score=180.63 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 008705 237 KDYFLASAYQELRMHKESLTKYEYLQGTFS------FSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYS 310 (557)
Q Consensus 237 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (557)
..+++|..+...|++++|+..|++++...+ ....++..+|.++...|+++.|+..+++++...+.......
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~--- 179 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI--- 179 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh---
Confidence 456789999999999999999999987632 24568899999999999999999999999998765432111
Q ss_pred HHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC------CHHHHHHHhHHHHhc
Q 008705 311 NVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN------YLSAWTLMGHEYVEM 384 (557)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~ 384 (557)
..+.++..+|.+|...|++++|+.+|++++++.+. ...++..+|.++...
T Consensus 180 ------------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 180 ------------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12457788999999999999999999999987431 246788999999999
Q ss_pred CCchHHHHHHHHHHh-----hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHhHHhc
Q 008705 385 KNTPAAIDAYRRAVD-----INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP-----NDSRLWIAMAQCYETEQL 454 (557)
Q Consensus 385 ~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l~~~~~~~~~ 454 (557)
|++++|+.+|++++. .+|....++..+|.++..+|++++|+.++++++.+.+ .....+..++.++.. .
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~--~ 313 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE--T 313 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS--S
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--C
Confidence 999999999999999 7787889999999999999999999999999999853 334566778888888 8
Q ss_pred Cc---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 455 HM---LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 455 ~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
++ +.+|+..+++. ...|....++..+|.+|...|++++|..+|+++++.
T Consensus 314 ~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88 88898888873 333455668889999999999999999999999984
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.86 E-value=3.2e-19 Score=175.42 Aligned_cols=278 Identities=11% Similarity=-0.047 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSN-----YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNV 312 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (557)
...+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|.......
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 34568899999999999999999998877542 25778899999999999999999999987664322110
Q ss_pred HHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC--------cCCHHHHHHHhHHHHhc
Q 008705 313 LYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD--------KNYLSAWTLMGHEYVEM 384 (557)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~ 384 (557)
...++..+|.++...|++++|+.++++++... |....++..+|.++...
T Consensus 92 -----------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 92 -----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred -----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 12346678999999999999999999998864 23445677899999999
Q ss_pred CCchHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CCHHHHH-----HHHHHHhHH
Q 008705 385 KNTPAAIDAYRRAVDINPRD-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--NDSRLWI-----AMAQCYETE 452 (557)
Q Consensus 385 ~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~-----~l~~~~~~~ 452 (557)
|++++|...+++++...+.. ..++..+|.++...|++++|..++++++.+.+ ..+..+. ..+.++..
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 227 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM- 227 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH-
Confidence 99999999999999887653 45688899999999999999999999987632 2211221 34455778
Q ss_pred hcCcHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH
Q 008705 453 QLHMLEEAIKCYRRAANCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 528 (557)
Q Consensus 453 ~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 528 (557)
.|++++|...+++++...|.. ...+..+|.++...|++++|...+++++......+ ..+....++..+|.++..
T Consensus 228 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 228 -TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp -TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHH
Confidence 999999999999998876543 33567889999999999999999999988543311 122344588889999999
Q ss_pred cCCHHHHHHHHHHHhccC
Q 008705 529 HGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 529 ~g~~~~A~~~~~~al~~~ 546 (557)
.|++++|...+++++.+.
T Consensus 306 ~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HTCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHh
Confidence 999999999999998764
No 78
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=1.9e-21 Score=164.13 Aligned_cols=146 Identities=19% Similarity=0.181 Sum_probs=136.2
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
||.++...|++++|+..+++++..+|.++.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH-HHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705 423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC-YRRAANCNDSEAIALNQLAKLHHALGR 490 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 490 (557)
+|+..|+++++++|+++.++..+|.++.. .|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCK--NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999 9999887765 599999999999999999999988885
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=5.1e-21 Score=202.35 Aligned_cols=188 Identities=14% Similarity=0.014 Sum_probs=177.1
Q ss_pred hhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHH--------hcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC
Q 008705 331 MTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRAL--------KLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402 (557)
Q Consensus 331 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 402 (557)
..+|.++..++..+ ...|++++|+..|++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45778888888777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482 (557)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 482 (557)
++..+|+.+|.++..+|++++|+..|+++++++|+++.++.++|.++.. .|++++ +..|+++++++|+++.+++++|
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~--~g~~~~-~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL--AGNTDE-HKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH--HTCCCT-TCHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCChHH-HHHHHHHHHhCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999 9999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705 483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR 531 (557)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 531 (557)
.++..+|++++|+..|+++++ .+|++..+++++|.++...|+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPP-------TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT-------TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcc-------cCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999 799999999999999987665
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.85 E-value=1.1e-18 Score=171.63 Aligned_cols=311 Identities=12% Similarity=0.028 Sum_probs=237.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESL 255 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~ 255 (557)
+.++..+|.++...|++++|+..+++++...|........ .....+|.++...|++++|+
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~A~ 73 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI--------------------VATSVLGEVLHCKGELTRSL 73 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHH--------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHH--------------------HHHHHHHHHHHhcCcHHHHH
Confidence 4577889999999999999999999999988765321110 12245699999999999999
Q ss_pred HHHHHHHhcCCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705 256 TKYEYLQGTFSFS------NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV 329 (557)
Q Consensus 256 ~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (557)
..+++++...|.. ..++..+|.++...|++++|+..+++++...+.....
T Consensus 74 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~------------------------ 129 (373)
T 1hz4_A 74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE------------------------ 129 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT------------------------
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc------------------------
Confidence 9999998865432 2346789999999999999999999999875421100
Q ss_pred HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-----CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC-
Q 008705 330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-----YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR- 403 (557)
Q Consensus 330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~- 403 (557)
..|....++..+|.++...|++++|..++++++...+. ...++..+|.++...|++++|+..+++++.+.+.
T Consensus 130 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 130 --QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp --TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred --cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 00123456677999999999999999999999988764 3467889999999999999999999999986332
Q ss_pred -ChHHHH-----HHHHHHHHhCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 404 -DYRAWY-----GLGQAYEMMHMPLYALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 404 -~~~~~~-----~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
....+. .++.++...|++++|..++++++...|.. ...+..+|.++.. .|++++|+..+++++...+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--LGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHh
Confidence 222222 34456889999999999999999877653 3357889999999 99999999999999876432
Q ss_pred ------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705 474 ------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 474 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 547 (557)
...++..+|.++...|++++|...+++++......+ ....+...| +.....+++++...|
T Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g------------~~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 286 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG------------FISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC------------CCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred CcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc------------HHHHHHHcc--HHHHHHHHHHHhCCC
Confidence 234888899999999999999999999998533211 112222333 455666666666655
Q ss_pred C
Q 008705 548 P 548 (557)
Q Consensus 548 ~ 548 (557)
.
T Consensus 352 ~ 352 (373)
T 1hz4_A 352 L 352 (373)
T ss_dssp S
T ss_pred C
Confidence 4
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=3.4e-20 Score=165.98 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=124.3
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHH----------------HhHHHHhcCCchHHHHHHHHHHh
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTL----------------MGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
.++.++..|..+...|++++|+.+|++++..+|+++.+|+. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45677888888888999999999999999999988888888 77777788888888888888888
Q ss_pred hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc--HHHHHHHHHHHHhcCCChHHH
Q 008705 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM--LEEAIKCYRRAANCNDSEAIA 477 (557)
Q Consensus 400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~ 477 (557)
++|++..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|.. .|+ ...+...+++++...| ...+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~a 159 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL--TAEQEKKKLETDYKKLSSPTK-MQYA 159 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HHHHHHHHHHHHHC---CCCH-HHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCCCc-hhHH
Confidence 8887777777888888888888888888888888888777777777777765 443 4455666666654322 2335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
++.+|.++...|++++|+.+|+++++
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66677777777777777777777777
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=5.1e-20 Score=174.25 Aligned_cols=216 Identities=10% Similarity=-0.013 Sum_probs=174.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSF------SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA 315 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 315 (557)
|.+|...|++++|+..|++++.+.+. ...++..+|.++...|++++|+.+|++++.+.|....
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------- 112 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ----------- 112 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----------
Confidence 55677899999999999999987432 2568899999999999999999999999997654211
Q ss_pred ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhh-CchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCch
Q 008705 316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLK-GQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTP 388 (557)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~ 388 (557)
... ...++..+|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|+++
T Consensus 113 ---~~~--------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 113 ---FRR--------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp ---HHH--------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHH--------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 111 135677899999996 99999999999999998754 467889999999999999
Q ss_pred HHHHHHHHHHhhCCCChH-------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHhHHhcCc
Q 008705 389 AAIDAYRRAVDINPRDYR-------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR-----LWIAMAQCYETEQLHM 456 (557)
Q Consensus 389 ~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~l~~~~~~~~~~~ 456 (557)
+|+..|++++.+.|++.. ++..+|.++..+|++++|+.+|+++++++|.... .+..++..+..+..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999987643 6789999999999999999999999999998655 3455666665222678
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 457 LEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
+++|+..|++++.++|....++..+-...
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999999999998777766665544
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=5.6e-20 Score=173.98 Aligned_cols=226 Identities=10% Similarity=0.005 Sum_probs=184.1
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHH
Q 008705 250 MHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRV 329 (557)
Q Consensus 250 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (557)
++++|+..|+++ |.++...|++++|+..|.+++.+.+...+ .
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~---------- 73 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGN--------------E---------- 73 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTC--------------H----------
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------------H----------
Confidence 589999999987 56788899999999999999987543211 0
Q ss_pred HhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhc-CCchHHHHHHHHHHhhCC
Q 008705 330 FMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEM-KNTPAAIDAYRRAVDINP 402 (557)
Q Consensus 330 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p 402 (557)
+..+.++..+|.+|...|++++|+.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++++.|
T Consensus 74 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 74 ----DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 0124678889999999999999999999999987653 46789999999996 999999999999999987
Q ss_pred CC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 403 RD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSR-------LWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 403 ~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
.+ ..++..+|.++..+|++++|+.+|++++.+.|++.. .+..+|.++.. +|++++|+.+|++++.
T Consensus 150 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA--ATDAVAAARTLQEGQS 227 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHGGGC
T ss_pred hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Confidence 54 567899999999999999999999999999987643 67899999999 9999999999999999
Q ss_pred cCCChHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHH
Q 008705 470 CNDSEAI-----ALNQLAKLHH--ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 526 (557)
Q Consensus 470 ~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 526 (557)
++|.... .+..++..+. ..+++++|+..|++++. .+|....++..+-...
T Consensus 228 l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~-------l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 228 EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR-------LDKWKITILNKIKESI 284 (292)
T ss_dssp C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC-------CCHHHHHHHHHHHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc-------cHHHHHHHHHHHHHHh
Confidence 9998654 3455666664 45679999999988877 7787777766665544
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=8.7e-18 Score=179.62 Aligned_cols=319 Identities=12% Similarity=0.027 Sum_probs=187.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCC----CHHHHHHHHH--hhhcHHH----HhhcCCChhHHHHHHHH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPW----NWNAWSELKS--LCTSIDI----LNSLNLNNHWMKDYFLA 242 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~l~~--~~~~~~~----~~~l~~~~~~~~~~~la 242 (557)
..+|.---.....|...|.+.+|++.|++++ ..|. +...-..++. +...... +..+. ... .--+|
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd---~~d-~~eIA 1056 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD---NYD-APDIA 1056 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh---hcc-HHHHH
Confidence 5566666777888889999999999999999 4554 2211111221 1111111 11111 000 11158
Q ss_pred HHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705 243 SAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL 322 (557)
Q Consensus 243 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 322 (557)
.++...|.+++|..+|+++- .. ...+...+...|++++|.++++++ +.+.+|..++..+...|+++++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~~---~~A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----VN---TSAVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----CH---HHHHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888888862 11 111122233666677777766654 3456666777777777777777
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC
Q 008705 323 SYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP 402 (557)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 402 (557)
...+.++ .++..+..+|.++...|++++|+++|..+.+..+. +.+-..+|.+|.+.+++++ ++.|. ..
T Consensus 1125 IdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~ 1192 (1630)
T 1xi4_A 1125 IDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NG 1192 (1630)
T ss_pred HHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hC
Confidence 6666543 56666777777777777777777777776665533 2222346666666666653 33331 12
Q ss_pred CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482 (557)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 482 (557)
.+...+..+|..+...|++++|+.+|.++ ..|..+|.++.+ +|++++|+++++++ .+..+|...+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk--Lge~q~AIEaarKA-----~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH--LGEYQAAVDGARKA-----NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH--hCCHHHHHHHHHHh-----CCHHHHHHHH
Confidence 23345556666666677777777666664 356666666666 66677777666666 3345555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 483 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 483 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
.++...|++..|..+... +. .+++.+..++.+|...|.+++|+.++++++.++
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Ii----------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IV----------VHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hh----------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 555555555555555443 21 123334456666666666666666666666655
No 85
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=4e-21 Score=185.00 Aligned_cols=314 Identities=12% Similarity=0.060 Sum_probs=175.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
+++.+|..+|.++.+.|++++|++.|.++ .+..++..+ +..+...|++++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V-------------------------~~~ae~~g~~Ee 79 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV-------------------------VQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHH-------------------------HHHHHhCCCHHH
Confidence 44569999999999999999999999874 234445444 778888999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhC
Q 008705 254 SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTD 333 (557)
Q Consensus 254 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (557)
|+.+++.+.+..+ ++.+...++.+|.+.|++.++.++++. |+ ..++..+|..++..|.++++..++..+
T Consensus 80 Ai~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 80 LVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 9999999887544 377888999999999999999988852 43 458999999999999999999999875
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
..|..+|.++...|++++|++.++++ +++.+|...+.++...|+++.|..+... +..+|+ -...++.
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~ 215 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELIN 215 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHH
Confidence 58889999999999999999999999 4789999999999999999999887775 334444 3456889
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHc
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-----SEAIALNQLAKLHHAL 488 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~ 488 (557)
.|.+.|++++|+.++++++.+++....+|..+|.+|.+...++..+.++.|...+.+.| .++..|..+..+|...
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987557788889998888887777 6778899999999999
Q ss_pred CCHHHHHHHHHHHHHH-----HHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 008705 489 GRDEEAAFYYKKDLER-----MEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLL 543 (557)
Q Consensus 489 g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 543 (557)
++++.|+..+-..... .-+..-..+.+.++++.....|. +....++..+..++
T Consensus 296 ~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 296 EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred chHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 9999998765443210 00000013556777877777776 33444455555555
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=1.1e-19 Score=162.60 Aligned_cols=178 Identities=13% Similarity=0.054 Sum_probs=154.1
Q ss_pred CCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHH----------------HHHHHhhhCchHHHHHHHHHHHhc
Q 008705 303 VDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCI----------------IGNYYSLKGQHEKSVVYFRRALKL 366 (557)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~ 366 (557)
.+.+...+..+...++++++...+.+++..+|.++.+++. +|.+|...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999999999999 999999999999999999999999
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC--hHHHHHHHHHHHhcCCCCHHHHHH
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM--PLYALHYFRKSVFLQPNDSRLWIA 444 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~ 444 (557)
+|++..++..+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...|+ ...+...|++++...|. ...++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 999999999999999999999999999999999999999999999999987764 45677788877653332 346788
Q ss_pred HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 484 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 484 (557)
+|.++.. .|++++|+.+|++++++.|+.. +...+..+
T Consensus 163 ~g~~~~~--~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 163 DGLSKLF--TTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHH--HHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred HHHHHHH--ccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 9999999 9999999999999999999753 33334443
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.4e-19 Score=158.46 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 416 (557)
...+..+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 008705 417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 496 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 496 (557)
..|++++|+.++++++...|.++.++..+|.++.. .|++++|+.++++++...|.++.++..+|.++...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN--LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH--cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666666666666666666666 6666666666666666666666666666666666666666666
Q ss_pred HHHHHHH
Q 008705 497 YYKKDLE 503 (557)
Q Consensus 497 ~~~~al~ 503 (557)
+++++++
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.6e-19 Score=158.02 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=163.2
Q ss_pred CcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh
Q 008705 304 DDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE 383 (557)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 383 (557)
..+..++.++...++++++...+.+++...|.++.++..+|.++...|++++|+.+++++++..|.+..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705 384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~ 463 (557)
.|++++|+..+++++..+|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++.. .|++++|+.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ--MGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--cCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcCCChH
Q 008705 464 YRRAANCNDSEA 475 (557)
Q Consensus 464 ~~~al~~~p~~~ 475 (557)
+++++...|++.
T Consensus 167 ~~~~~~~~~~~~ 178 (186)
T 3as5_A 167 FKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHcCCCch
Confidence 999999887654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=8.5e-21 Score=160.06 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=136.4
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 455 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 455 (557)
.||.++...|++++|+..+++++..+|.++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++.. .|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL--EE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cC
Confidence 4788888999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705 456 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY-YKKDLERMEAEEREGPNMVEALIFLATHCRAHGR 531 (557)
Q Consensus 456 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 531 (557)
++++|+.+|+++++++|+++.++..+|.++...|++++|... ++++++ .+|+++.++..++.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-------l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-------LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------hCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 599999 689999999999999998885
No 90
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.82 E-value=5.4e-17 Score=168.47 Aligned_cols=371 Identities=10% Similarity=-0.005 Sum_probs=242.8
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH---H---hh-----cC-C-
Q 008705 165 LSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI---L---NS-----LN-L- 231 (557)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~---~---~~-----l~-~- 231 (557)
++..+..+|.|...|..+.......+.++.|..+|++++...|.....|...+......+. . .. +. .
T Consensus 55 lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~ 134 (679)
T 4e6h_A 55 LNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL 134 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC
Confidence 3444445899999999999999999999999999999999999999999888776433222 1 11 11 1
Q ss_pred --C--hhHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHhc----CCCCHHHHHHHHHHHH---------hcccHH
Q 008705 232 --N--NHWMKDYFLASAYQELRMH--------KESLTKYEYLQGT----FSFSNYIQAQIAKAQY---------SLREFE 286 (557)
Q Consensus 232 --~--~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~l~~----~p~~~~~~~~la~~~~---------~~g~~~ 286 (557)
+ +-|..+ .......++. +.....|++++.. ++.+..+|........ ..++.+
T Consensus 135 ~~~sv~LW~~Y---l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 135 GNNDLSLWLSY---ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp CCCCHHHHHHH---HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred CCCCHHHHHHH---HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 1 222222 1112223322 3344777777753 5667777766655433 345678
Q ss_pred HHHHHHHHHHHhCCCCC--CcHHHHHHHHHhccc-------------hhHHHHHHHHHH----hh---CCCC--------
Q 008705 287 QVEVIFEELLRNDPYRV--DDMDMYSNVLYAKEC-------------FSALSYLAHRVF----MT---DKYR-------- 336 (557)
Q Consensus 287 ~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~----~~---~~~~-------- 336 (557)
.+..+|++++.. |... ..+..+.......+. +..+........ .+ .|..
T Consensus 212 ~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 212 YIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 888999999864 4321 122222222111111 111111111100 00 0110
Q ss_pred -----------hhHHHHHHHHHhhhC-------chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHH-HHHHHH
Q 008705 337 -----------PESCCIIGNYYSLKG-------QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAI-DAYRRA 397 (557)
Q Consensus 337 -----------~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a 397 (557)
...|......-...+ ..+.....|++++...|.++..|+..+..+...|+.++|+ ..|.++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 022222222222111 1234567788888888888888888888888888888886 888888
Q ss_pred HhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----------CCC-----------CHHHHHHHHHHHhHHhcC
Q 008705 398 VDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL-----------QPN-----------DSRLWIAMAQCYETEQLH 455 (557)
Q Consensus 398 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------~p~-----------~~~~~~~l~~~~~~~~~~ 455 (557)
+...|.+...|..++......|+++.|...|++++.. .|. ...+|...+.+..+ .|
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR--~~ 448 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR--IQ 448 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH--cC
Confidence 8888888888888888888888888888888888864 243 34578888888777 88
Q ss_pred cHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHH
Q 008705 456 MLEEAIKCYRRAANC-NDSEAIALNQLAKLHHALGR-DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFE 533 (557)
Q Consensus 456 ~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 533 (557)
..+.|...|.+|++. .+....++...|.+....++ .+.|..+|+.+++ ..|.++..+...+......|+.+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk-------~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK-------YFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH-------HHTTCHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------HCCCchHHHHHHHHHHHhCCCHH
Confidence 888888888888876 43445666677777666654 7888888888888 45677777778888888888888
Q ss_pred HHHHHHHHHhccCCC
Q 008705 534 EAEVYCTRLLDYTGP 548 (557)
Q Consensus 534 ~A~~~~~~al~~~~~ 548 (557)
.|..+|++++...|+
T Consensus 522 ~AR~lferal~~~~~ 536 (679)
T 4e6h_A 522 QVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHHHTTTSSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888887763
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=2.1e-19 Score=168.96 Aligned_cols=237 Identities=14% Similarity=0.128 Sum_probs=187.3
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh-hCCCChhHHHHHHHHHhhhCchHHHHH
Q 008705 280 YSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM-TDKYRPESCCIIGNYYSLKGQHEKSVV 358 (557)
Q Consensus 280 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~ 358 (557)
...|++++|+..|+++++... +... ..|..+.++..+|.++...|++++|+.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 64 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLE---------------------------KTSGHDHPDVATMLNILALVYRDQNKYKEAAH 64 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHH---------------------------HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH---------------------------HhcCCCCHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 356788888888888877432 1111 124456788999999999999999999
Q ss_pred HHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCChH
Q 008705 359 YFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI--------NPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 359 ~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
+|++++.. .|....++..+|.++...|++++|+..|++++.. +|....++..+|.++...|+++
T Consensus 65 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 65 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 99999987 4666788999999999999999999999999988 4666888999999999999999
Q ss_pred HHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc---------CCChHHHHHHHHHHH
Q 008705 423 YALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC---------NDSEAIALNQLAKLH 485 (557)
Q Consensus 423 ~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~ 485 (557)
+|+.+|++++++ .|....++..+|.++.. .|++++|+.++++++.. .+....++..++..+
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK--QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE 222 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 999999999998 66667889999999999 99999999999999986 344455777777777
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 486 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
...+....+.. +..+...........|..+.++..+|.++...|++++|..+|++++++.
T Consensus 223 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 223 ESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 76655444433 3444443333334568889999999999999999999999999999863
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=9.9e-19 Score=158.61 Aligned_cols=191 Identities=11% Similarity=0.031 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH---HHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR---AWY 409 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 409 (557)
.+..++.+|..+...|++++|+..|+++++..|.++ .+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467888999999999999999999999999988764 68999999999999999999999999999998864 788
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH-------------
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI------------- 476 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------- 476 (557)
.+|.++...+.. ....+..++..+.. .|++++|+..|+++++..|+++.
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRD--PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC------------------------------C--CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcC--cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 999998874311 01112223333333 44444444444444444444332
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 477 ----ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM---VEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 477 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
....+|.+|...|++++|+..|+++++ ..|++ +.++..+|.++.++|++++|+..++++....|.+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR-------DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 236789999999999999999999999 45554 5789999999999999999999999998876654
Q ss_pred hh
Q 008705 550 SF 551 (557)
Q Consensus 550 ~~ 551 (557)
.+
T Consensus 218 ~~ 219 (225)
T 2yhc_A 218 LE 219 (225)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 93
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=4.1e-17 Score=153.30 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=199.1
Q ss_pred HHHhhhH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHhccc----------HHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705 246 QELRMHK-ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLRE----------FEQVEVIFEELLRNDPYRVDDMDMYSNVLY 314 (557)
Q Consensus 246 ~~~~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 314 (557)
...|.+. +|+..+.+++..+|++..+|...+.++...+. +++++.++..++..+|.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------------- 106 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------------- 106 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-------------
Confidence 3455554 78899999999999999999888888877765 56666666666666665
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhC--chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC-chHHH
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKG--QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN-TPAAI 391 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~ 391 (557)
+..+|...+.++...+ .+++++.++.++++.+|.+..+|...+.+....|. +++++
T Consensus 107 ---------------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 107 ---------------------SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp ---------------------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ---------------------CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 6778888888888877 48999999999999999999999999999999998 58999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHh--------------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc---
Q 008705 392 DAYRRAVDINPRDYRAWYGLGQAYEMM--------------HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL--- 454 (557)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--- 454 (557)
+++.++++.+|.+..+|..++.++... +.+++++.++.+++..+|++..+|+.+..++.. .
T Consensus 166 ~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~--~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA--GSGR 243 (331)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS--SSCG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccCc
Confidence 999999999999999999999999887 568899999999999999999999877766655 4
Q ss_pred --------CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 008705 455 --------HMLEEAIKCYRRAANCNDSEAIALNQLAKLHH---ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523 (557)
Q Consensus 455 --------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 523 (557)
+.++++++++++++++.|++..++..++.+.. ..|..++...++.+.++ .+|....-|..++
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-------VDPMRAAYLDDLR 316 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH-------HCGGGHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH-------hCcchhhHHHHHH
Confidence 46899999999999999999777666665543 35778899999999998 6898887777766
Q ss_pred HHHH
Q 008705 524 THCR 527 (557)
Q Consensus 524 ~~~~ 527 (557)
.-+.
T Consensus 317 ~~~~ 320 (331)
T 3dss_A 317 SKFL 320 (331)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=2.1e-19 Score=168.93 Aligned_cols=228 Identities=12% Similarity=0.096 Sum_probs=178.6
Q ss_pred HhhhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccch
Q 008705 248 LRMHKESLTKYEYLQGT--------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECF 319 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 319 (557)
.|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.......
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------- 77 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL---------------- 77 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc----------------
Confidence 45555556555555542 255678899999999999999999999999997641000
Q ss_pred hHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhc--------CcCCHHHHHHHhHHHHhcCCchHHH
Q 008705 320 SALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--------DKNYLSAWTLMGHEYVEMKNTPAAI 391 (557)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~ 391 (557)
-...|..+.++..+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+
T Consensus 78 ----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 78 ----------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ----------CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0012234667889999999999999999999999988 4777889999999999999999999
Q ss_pred HHHHHHHhh--------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHhHHhc
Q 008705 392 DAYRRAVDI--------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL---------QPNDSRLWIAMAQCYETEQL 454 (557)
Q Consensus 392 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------~p~~~~~~~~l~~~~~~~~~ 454 (557)
..+++++.+ .|....++..+|.++...|++++|+.++++++++ .+.....+..++..+.. .
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 225 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES--K 225 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc--C
Confidence 999999998 6767889999999999999999999999999986 44555677777776654 4
Q ss_pred Cc------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 455 HM------LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 455 ~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
+. +.++...++......|..+.++..+|.+|...|++++|+.+|+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 226 DKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 44555555555445567788999999999999999999999999986
No 95
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.80 E-value=1.3e-15 Score=158.07 Aligned_cols=423 Identities=10% Similarity=0.083 Sum_probs=291.9
Q ss_pred cccchhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHH
Q 008705 86 DEVEDSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLEREL 165 (557)
Q Consensus 86 ~~~~~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (557)
+|.....-..+++.....++++++..+|+.++..-|....+...|+..+.+... . .++..+..-+
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~-----------~----~~~~~v~~lf 126 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKME-----------E----LDAAVIEPVL 126 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-------------C----CCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC-----------c----chHHHHHHHH
Confidence 454555555667777777788888888877765444333333333332211100 0 1244455556
Q ss_pred hhhhcCCC--CChhHHHHHHHHHHhcCCh----HH----HHHHHHHHhcc----CCCCHHHHHHHHHhhhcHHHHhhcCC
Q 008705 166 STSWKNGT--VDPFGLYLYGIVLKDKGNE----NL----ARTVFVESVNS----YPWNWNAWSELKSLCTSIDILNSLNL 231 (557)
Q Consensus 166 ~~~~~~~~--~~~~~~~~~g~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~a~~~l~~~~~~~~~~~~l~~ 231 (557)
++.+...| .++.+|..+.......++. ++ ....|++|+.. +|.....|.....+..... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~------~ 200 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK------P 200 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC------C
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc------c
Confidence 66665553 5666777776665555543 23 33667776652 5556666655533322100 0
Q ss_pred ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CH-HHHHHHHH-------------HHHhcccHHHHHHHHHHHH
Q 008705 232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSF-SN-YIQAQIAK-------------AQYSLREFEQVEVIFEELL 296 (557)
Q Consensus 232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~-~~~~~la~-------------~~~~~g~~~~A~~~~~~~l 296 (557)
+.-+...++.+.+..+|++++.. |. .. .+|..... +-....+|+.|...+...-
T Consensus 201 ----------~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 201 ----------VNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWL 269 (679)
T ss_dssp ----------CSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHH
Confidence 00112455678888899998864 43 22 12211110 1112234566666665432
Q ss_pred Hh-------CCCCC-------------------CcHHHHHHHHHhccc---------hhHHHHHHHHHHhhCCCChhHHH
Q 008705 297 RN-------DPYRV-------------------DDMDMYSNVLYAKEC---------FSALSYLAHRVFMTDKYRPESCC 341 (557)
Q Consensus 297 ~~-------~p~~~-------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 341 (557)
.. .|... ..|..+.. +...+ ...+..++++++...|..++.|+
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~--fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~ 347 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR--WESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWF 347 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH--HHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 21 11110 01122222 22221 23356788999999999999999
Q ss_pred HHHHHHhhhCchHHHH-HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh-----------CCC------
Q 008705 342 IIGNYYSLKGQHEKSV-VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI-----------NPR------ 403 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~p~------ 403 (557)
..+..+...|+.++|. ..|++|+...|.+...|...+......|+++.|...|++++.. .|.
T Consensus 348 ~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 348 NMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 9999999999999997 9999999999999999999999999999999999999999975 243
Q ss_pred -----ChHHHHHHHHHHHHhCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhHHhcC-cHHHHHHHHHHHHhcCCChHH
Q 008705 404 -----DYRAWYGLGQAYEMMHMPLYALHYFRKSVFL-QPNDSRLWIAMAQCYETEQLH-MLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 404 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~ 476 (557)
...+|...+....+.|..+.|...|.+|++. .+....+|...+.+... .+ +++.|.++|+++++..|+++.
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~--~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH--ISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT--TTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHCCCchH
Confidence 3457888899989999999999999999987 44557788877777666 65 489999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP---NMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
.+...+......|+.+.|..+|++++. ..| ....+|..........|+.+.+....+++.+..|++..
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~-------~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSID-------KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTT-------TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999999999999998 444 56788999999999999999999999999999987654
No 96
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=9.1e-20 Score=175.63 Aligned_cols=291 Identities=13% Similarity=0.089 Sum_probs=145.7
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 008705 184 IVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQG 263 (557)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 263 (557)
....+.|+.++|.+++++. +++.+|..| |.++...|++++|++.|.++
T Consensus 11 ~ll~~~~~ld~A~~fae~~-----~~~~vWs~L-------------------------a~A~l~~g~~~eAIdsfika-- 58 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-----NEPAVWSQL-------------------------AKAQLQKGMVKEAIDSYIKA-- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-----CChHHHHHH-------------------------HHHHHHcCCHHHHHHHHHcC--
Confidence 3445788899999999998 223467666 99999999999999999774
Q ss_pred cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHH
Q 008705 264 TFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCII 343 (557)
Q Consensus 264 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 343 (557)
.++..+...+.++...|++++|+.+++.+++..++ +.....++.++...|++.++..+.+. | +..+|..+
T Consensus 59 ---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~I 128 (449)
T 1b89_A 59 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQV 128 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTC-----C---------
T ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHH
Confidence 45668888899999999999999999999886443 45556677788888888887766532 3 44699999
Q ss_pred HHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHH
Q 008705 344 GNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLY 423 (557)
Q Consensus 344 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 423 (557)
|..+...|++++|..+|.++ ..|..+|.++..+|++++|++.++++ .++.+|...+.++...|+++.
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp --------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHH
Confidence 99999999999999999976 46889999999999999999999999 478999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 008705 424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL--GRDEEAAFYYKKD 501 (557)
Q Consensus 424 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a 501 (557)
|..+... +... +.-...++.+|.+ .|++++|+.++++++.+++.+..++..+|.+|.+- ++..+.++.|...
T Consensus 196 A~~~~l~-L~~~---ad~l~~lv~~Yek--~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 196 AQMCGLH-IVVH---ADELEELINYYQD--RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHTTTT-TTTC---HHHHHHHHHHHHH--TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHH-HHhC---HhhHHHHHHHHHH--CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9877765 3344 4445578899999 99999999999999999999999999999998765 3445555555444
Q ss_pred HHHHHhhhcCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 502 LERMEAEEREGP-----NMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 502 l~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
+. ..| +.+..|..+..+|...++++.|......-
T Consensus 270 in-------i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 270 VN-------IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp SC-------HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hc-------CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 43 334 56778899999999999999999866554
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.80 E-value=5.5e-18 Score=153.67 Aligned_cols=200 Identities=12% Similarity=0.059 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Q 008705 238 DYFLASAYQELRMHKESLTKYEYLQGTFSFSN---YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLY 314 (557)
Q Consensus 238 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 314 (557)
.+.+|..+...|++++|+..|++++..+|.++ .+++.+|.+++..|++++|+..|+++++.+|++.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~----------- 75 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP----------- 75 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----------
Confidence 44456666666666666666666666666663 4566666666666666666666666666666431
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHH
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAY 394 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 394 (557)
..+.+++.+|.++...+.. ....+..++..+...|++++|+..|
T Consensus 76 --------------------~~~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 76 --------------------NIDYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp --------------------THHHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHH
Confidence 1234556666665543321 1112233444444566777777777
Q ss_pred HHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 395 RRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 395 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
+++++.+|++..++..+..+....+. .......+|.++.. .|++++|+..|+++++..|++
T Consensus 120 ~~~l~~~P~~~~a~~a~~~l~~~~~~-----------------~~~~~~~~a~~~~~--~~~~~~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 120 SKLVRGYPNSQYTTDATKRLVFLKDR-----------------LAKYEYSVAEYYTE--RGAWVAVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHCcCC
Confidence 77777777776554322221111100 01123456777777 777777777777777777765
Q ss_pred H---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 475 A---IALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 475 ~---~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
+ .++..+|.++.++|++++|+..++++..
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 4 5677777777777777777777776654
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=9.9e-19 Score=142.32 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=77.0
Q ss_pred HhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 008705 364 LKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI 443 (557)
Q Consensus 364 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 443 (557)
..++|+...++..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+|.
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 008705 444 AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 484 (557)
Q Consensus 444 ~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 484 (557)
.+|.++.. +|++++|+..|+++++++|++..++..++.+
T Consensus 86 ~lg~~~~~--~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVA--MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666 6666666666666666666666666666554
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=7.5e-19 Score=152.75 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=150.2
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
|...+.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 334567888999999999999999999999999999999999999999999999999999999999999 8877766665
Q ss_pred HHH-HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCC
Q 008705 414 AYE-MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGR 490 (557)
Q Consensus 414 ~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 490 (557)
+.. ..+...+|+..++++++.+|+++.+++.+|.++.. .|++++|+..|++++..+|.. +.++..+|.++...|+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ--VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 533 33445568999999999999999999999999999 999999999999999999875 6699999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008705 491 DEEAAFYYKKDLE 503 (557)
Q Consensus 491 ~~~A~~~~~~al~ 503 (557)
.++|+..|++++.
T Consensus 160 ~~~A~~~y~~al~ 172 (176)
T 2r5s_A 160 GNAIASKYRRQLY 172 (176)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999987
No 100
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.79 E-value=6.5e-17 Score=151.92 Aligned_cols=237 Identities=13% Similarity=0.086 Sum_probs=193.5
Q ss_pred hcccHH-HHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHH
Q 008705 281 SLREFE-QVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVY 359 (557)
Q Consensus 281 ~~g~~~-~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 359 (557)
..|++. +|+..+.+++..+|.+..+|.....++...+.. . .++ .....+++++.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~---~~~---------~~~~~l~~EL~~ 96 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------K---SPE---------ESAALVKAELGF 96 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------S---CHH---------HHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------c---cch---------hhhHHHHHHHHH
Confidence 445554 788888888888887666555554444322110 0 000 001237899999
Q ss_pred HHHHHhcCcCCHHHHHHHhHHHHhcCC--chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC-hHHHHHHHHHHHhcCC
Q 008705 360 FRRALKLDKNYLSAWTLMGHEYVEMKN--TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM-PLYALHYFRKSVFLQP 436 (557)
Q Consensus 360 ~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p 436 (557)
+..++..+|.+..+|...+.++...++ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|
T Consensus 97 ~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p 176 (331)
T 3dss_A 97 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 176 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999995 8999999999999999999999999999999999 5999999999999999
Q ss_pred CCHHHHHHHHHHHhHHhc--------------CcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCH
Q 008705 437 NDSRLWIAMAQCYETEQL--------------HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL-----------GRD 491 (557)
Q Consensus 437 ~~~~~~~~l~~~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~ 491 (557)
.+..+|..++.++.. . +.++++++++.+++..+|++..+|+.+..++... +.+
T Consensus 177 ~N~SAW~~R~~ll~~--l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l 254 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQ--LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVL 254 (331)
T ss_dssp CCHHHHHHHHHHHHH--HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence 999999999999988 6 5789999999999999999999998777776665 457
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCch
Q 008705 492 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR---AHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
++++++++++++ ..|++..++..++.+.. ..|..++...++.+++++||-..
T Consensus 255 ~~el~~~~elle-------~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 255 QSELESCKELQE-------LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHh-------hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 899999999998 68888776666655433 36888999999999999997654
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=1.4e-18 Score=141.50 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=115.5
Q ss_pred HHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH
Q 008705 329 VFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW 408 (557)
Q Consensus 329 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (557)
+..++|..++.+..+|+.|+..|++++|+.+|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|++..+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 449 (557)
+.+|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998875
No 102
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.78 E-value=4.5e-17 Score=153.58 Aligned_cols=240 Identities=13% Similarity=0.050 Sum_probs=200.6
Q ss_pred HHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHH
Q 008705 244 AYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLR-EFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSAL 322 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 322 (557)
+....+..++|+..+++++..+|++..+|..++.++...| .+++++..+++++..+|.+
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn-------------------- 122 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS-------------------- 122 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC--------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc--------------------
Confidence 3344455678999999999999999999999999999999 5999999999999988874
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHhhh-C-chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch--------HHHH
Q 008705 323 SYLAHRVFMTDKYRPESCCIIGNYYSLK-G-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP--------AAID 392 (557)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~ 392 (557)
..+|...+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++ ++++
T Consensus 123 --------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 123 --------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp --------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 56777777777776 6 8899999999999999999999999999999988888 9999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCC-------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcH--------
Q 008705 393 AYRRAVDINPRDYRAWYGLGQAYEMMHM-------PLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML-------- 457 (557)
Q Consensus 393 ~~~~al~~~p~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~-------- 457 (557)
++.++++.+|.+..+|...+.+....++ +++++.++++++..+|++..+|+.+..++.. .|+.
T Consensus 189 ~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~--~~~~~~~~~~~~ 266 (349)
T 3q7a_A 189 WCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH--FSLPLVPILPAI 266 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCCSGGGHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cCCCcccccccc
Confidence 9999999999999999999999999887 7899999999999999999999999888887 6653
Q ss_pred ------------HHHHHHHHHHHhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 008705 458 ------------EEAIKCYRRAANCN------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL 519 (557)
Q Consensus 458 ------------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 519 (557)
.+-.......+... +..+.++..++.+|...|+.++|.++++...+. .+|-....|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~------~dpir~~yw 340 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE------YDQMRAGYW 340 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCGGGHHHH
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------hChHHHHHH
Confidence 22222222222222 466789999999999999999999999998752 688888888
Q ss_pred HHHHHH
Q 008705 520 IFLATH 525 (557)
Q Consensus 520 ~~la~~ 525 (557)
...+..
T Consensus 341 ~~~~~~ 346 (349)
T 3q7a_A 341 EFRRRE 346 (349)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.78 E-value=8.1e-19 Score=152.54 Aligned_cols=169 Identities=13% Similarity=-0.031 Sum_probs=149.1
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
+|.....++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3445567889999999999999999999999999999999999999999999999999999999999999 887776666
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch--HHHHHHHHH
Q 008705 447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM--VEALIFLAT 524 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~ 524 (557)
.+.... .+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++ ..|.. +.++..+|.
T Consensus 81 ~~~~~~-~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 81 KLELHQ-QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-------VNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHH-HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTTTTTHHHHHHHH
T ss_pred HHHHHh-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hCcccChHHHHHHHHH
Confidence 554320 33445689999999999999999999999999999999999999999998 67764 669999999
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q 008705 525 HCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 525 ~~~~~g~~~~A~~~~~~al~ 544 (557)
++...|+.++|...|++++.
T Consensus 153 ~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999875
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.78 E-value=8.2e-18 Score=158.46 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=161.6
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
.|..++.+..+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999997777777788
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCC
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGR 490 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 490 (557)
..+...++.++|+..|++++..+|+++.+++.+|.++.. .|++++|+..|++++..+|++ ..++..++.++...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~--~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ--VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999999999 999999999999999999998 8899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008705 491 DEEAAFYYKKDLE 503 (557)
Q Consensus 491 ~~~A~~~~~~al~ 503 (557)
.++|...|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999987
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.77 E-value=4.5e-17 Score=153.53 Aligned_cols=225 Identities=11% Similarity=0.045 Sum_probs=186.7
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHhhhC-chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-C-CchHHHHHHHHH
Q 008705 321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKG-QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-K-NTPAAIDAYRRA 397 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~a 397 (557)
++..+...++..+|.+..+|...+.++...| .+++++.++.+++..+|++..+|...+.++... + ++++++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3444455555555567788888898888888 599999999999999999999999999999998 8 999999999999
Q ss_pred HhhCCCChHHHHHHHHHHHHhCChH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc-------HHHHHH
Q 008705 398 VDINPRDYRAWYGLGQAYEMMHMPL--------YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM-------LEEAIK 462 (557)
Q Consensus 398 l~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-------~~~A~~ 462 (557)
++.+|++..+|...+.+....|.++ +++.++.++++.+|.+..+|...+.++.. .++ ++++++
T Consensus 152 L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~--l~~~~~~~~~~~eELe 229 (349)
T 3q7a_A 152 LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS--RPGAETSSRSLQDELI 229 (349)
T ss_dssp TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT--STTCCCCHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccccchHHHHHHHH
Confidence 9999999999999999999999888 99999999999999999999999999998 886 799999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCHHH----------------HH-HHHHHHHHHHHhh--hcCCcchHHHHHHHH
Q 008705 463 CYRRAANCNDSEAIALNQLAKLHHALGRDEE----------------AA-FYYKKDLERMEAE--EREGPNMVEALIFLA 523 (557)
Q Consensus 463 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----------------A~-~~~~~al~~~~~~--~~~~~~~~~~~~~la 523 (557)
++++++..+|++..+|+.+..++...|+... .. ..-+.+++..... ....+..+.++..++
T Consensus 230 ~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 230 YILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 9999999999999999999999998887510 00 1111122111000 012256788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHh-ccCC
Q 008705 524 THCRAHGRFEEAEVYCTRLL-DYTG 547 (557)
Q Consensus 524 ~~~~~~g~~~~A~~~~~~al-~~~~ 547 (557)
.+|...|+.++|.+.|+.+. +.+|
T Consensus 310 d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 99999999999999999987 5553
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=1.3e-17 Score=157.13 Aligned_cols=169 Identities=13% Similarity=-0.009 Sum_probs=160.2
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
.|.+...+..+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999999997776777777
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch--HHHHHHHHH
Q 008705 447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM--VEALIFLAT 524 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~la~ 524 (557)
..+.. .++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++ .+|++ ..++..++.
T Consensus 193 ~~l~~--~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~-------~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 193 IELLX--QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR-------XDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHH--HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTGGGGHHHHHHHH
T ss_pred HHHHh--hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-------cccccccchHHHHHHH
Confidence 77888 89999999999999999999999999999999999999999999999999 57877 899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q 008705 525 HCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 525 ~~~~~g~~~~A~~~~~~al~ 544 (557)
++...|+.++|...|++++.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999875
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=2.5e-18 Score=144.03 Aligned_cols=122 Identities=13% Similarity=0.111 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431 (557)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 431 (557)
++-.+-..+++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33344456777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 432 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 432 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
++++|+++.+|+.+|.++.. +|++++|+.+|++++.+.|+.+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~--lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLR--LKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999 9999999999999999998865
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.75 E-value=6.1e-18 Score=154.24 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=175.8
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHH-------hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHH--
Q 008705 340 CCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLM-------GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYG-- 410 (557)
Q Consensus 340 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-- 410 (557)
.+..|.-+ ..+++..|...|.+++.++|+..++|..+ +.++...++..+++..+++.+.+.|....+++.
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34445555 58999999999999999999999999999 899999999999999999999988876544444
Q ss_pred -------------------HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 411 -------------------LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 411 -------------------l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
++.++...|++++|...|..++...|.+. ..+.+|.++.. .+++++|+..|+++....
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~--~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA--AERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH--TTCHHHHHHHHTTGGGCS
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH--cCCHHHHHHHHHHhhccC
Confidence 77899999999999999999999999888 99999999999 999999999999887764
Q ss_pred CCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 008705 472 DSE--AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-MVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 472 p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 548 (557)
+.. ..+++.+|.++..+|++++|+.+|++++.. ...|. .+.+++.+|.++.++|+.++|...|++++..+|.
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-----~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-----PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-----CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 332 458999999999999999999999999861 11155 7789999999999999999999999999999986
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=1.9e-17 Score=172.13 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=123.9
Q ss_pred hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHH
Q 008705 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFR 429 (557)
Q Consensus 350 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 429 (557)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+.+|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHH
Q 008705 430 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL---GRDEEAAFYYKKDLERME 506 (557)
Q Consensus 430 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~ 506 (557)
++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++... |++++|...|+++++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~--- 156 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALED--AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA--- 156 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH---
T ss_pred HHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh---
Confidence 8888888888888888888888 88888888888888888888888888888888888 888888888888888
Q ss_pred hhhcCCcchHHHHHHHH
Q 008705 507 AEEREGPNMVEALIFLA 523 (557)
Q Consensus 507 ~~~~~~~~~~~~~~~la 523 (557)
..|.....+..++
T Consensus 157 ----~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 ----QGVGAVEPFAFLS 169 (568)
T ss_dssp ----HTCCCSCHHHHTT
T ss_pred ----cCCcccChHHHhC
Confidence 4565555555554
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.74 E-value=2.6e-19 Score=172.57 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=130.7
Q ss_pred hhhCchHHHHHHHHH----HHhcCcCCHHHHHHHhHHHH------------hcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 348 SLKGQHEKSVVYFRR----ALKLDKNYLSAWTLMGHEYV------------EMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
...+.+++|+..+++ ++.+.|.. ++...|.... .++++++|+..|++++..+|.+..++..+
T Consensus 76 ~~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~ 153 (336)
T 1p5q_A 76 DLPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER 153 (336)
T ss_dssp TCCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHH
Confidence 334566677777766 66666665 4444443332 45566677777777777777777777777
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPND---------------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
|.++...|++++|+..|++++.+.|.+ ..++.++|.++.. .|++++|+.+|++++.++|+++.
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK--LQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHH
Confidence 777777777777777777777777776 5677777777777 77777777777777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHhc
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEA-EVYCTRLLD 544 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 544 (557)
+++.+|.+|..+|++++|+.+|+++++ ..|.+..++..++.++...|++++| ...|++++.
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQ-------LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777 5677777777777777777777777 445555554
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=8.4e-18 Score=140.79 Aligned_cols=110 Identities=11% Similarity=0.065 Sum_probs=107.0
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
..+++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++.. .|++++|+.+|++++.++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI--KEQFQQAADLYAVAFALG 100 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HccHHHHHHHHHHHHhhC
Confidence 456778889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
|+++.+++++|.+|..+|++++|+.+|+++++
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=7.7e-17 Score=167.59 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=134.7
Q ss_pred cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHH
Q 008705 384 MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKC 463 (557)
Q Consensus 384 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~ 463 (557)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++.. .|++++|+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT--QQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 008705 464 YRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH---GRFEEAEVYCT 540 (557)
Q Consensus 464 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~ 540 (557)
|+++++.+|+++.++..+|.++...|++++|+.+|+++++ ..|+++.++..+|.++... |++++|...++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ-------LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 6899999999999999999 99999999999
Q ss_pred HHhccCCCc
Q 008705 541 RLLDYTGPV 549 (557)
Q Consensus 541 ~al~~~~~~ 549 (557)
++++.+|..
T Consensus 153 ~al~~~p~~ 161 (568)
T 2vsy_A 153 AAVAQGVGA 161 (568)
T ss_dssp HHHHHTCCC
T ss_pred HHHhcCCcc
Confidence 999998764
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=2.4e-16 Score=150.06 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=126.7
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCC------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHH
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNY------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYG 410 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 410 (557)
.|.+|...|++++|+.+|.+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+.. ..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556667778888888888877765432 3467778888888888888888888887764321 456777
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------HHHH
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIAL 478 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~ 478 (557)
+|.+|.. |++++|+.+|++++.+.|.. ..++..+|.++.. +|++++|+.+|++++.+.|.+ ..++
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR--QQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence 8888877 88888888888888776543 4567778888888 888888888888887764432 2367
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 008705 479 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEV 537 (557)
Q Consensus 479 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 537 (557)
..+|.++..+|++++|+.+|++++ ..+. . ...........++..+ ..|+.+.+..
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al-~~p~-~-~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY-SIPG-F-SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TSTT-S-TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-CCCC-C-CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777778888888888888888877 3211 0 0112233444555544 4566544433
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=2e-16 Score=141.68 Aligned_cols=183 Identities=14% Similarity=-0.027 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC----ChHHHHHHHH
Q 008705 354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH----MPLYALHYFR 429 (557)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 429 (557)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577788888765 67888888888888888888888888888775 478888888888887 6 8888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHhHHh--cCcHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 008705 430 KSVFLQPNDSRLWIAMAQCYETEQ--LHMLEEAIKCYRRAANCND--SEAIALNQLAKLHHA----LGRDEEAAFYYKKD 501 (557)
Q Consensus 430 ~a~~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 501 (557)
++.+ +.++.+++.+|.+|..+. .+++++|+.+|+++.+..| .++.++++||.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8865 567888888888886311 4688888888888888877 358888888888888 78888999999888
Q ss_pred HHHHHhhhcCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCCCchh
Q 008705 502 LERMEAEEREGPNMVEALIFLATHCRAH-G-----RFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 502 l~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~ 551 (557)
++ . +.++.+++.||.+|... | ++++|+.+|+++++...+...
T Consensus 156 ~~-------~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~ 203 (212)
T 3rjv_A 156 SS-------L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGC 203 (212)
T ss_dssp HH-------T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HH-------c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 87 3 55667888888888764 3 888999999888887654443
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.71 E-value=3e-16 Score=149.42 Aligned_cols=217 Identities=13% Similarity=0.001 Sum_probs=162.8
Q ss_pred HHhhhHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705 247 ELRMHKESLTKYEYLQGTFSFS-----------NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA 315 (557)
Q Consensus 247 ~~~~~~~A~~~~~~~l~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 315 (557)
..|++.+|.++++++.+..+.. ...+...|.++...|++++|+..|.+++...+...+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------- 71 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS----------- 71 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----------
Confidence 3577888888888776643321 113344455666666666666666666655432110
Q ss_pred ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC------CHHHHHHHhHHHHhcCCchH
Q 008705 316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN------YLSAWTLMGHEYVEMKNTPA 389 (557)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~ 389 (557)
. .....++..+|.+|...|++++|+.+|++++.+.+. ...++..+|.+|.. |++++
T Consensus 72 ---~--------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 72 ---L--------------FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp ---H--------------HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred ---H--------------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 0 012356778999999999999999999999988543 24678899999998 99999
Q ss_pred HHHHHHHHHhhCCCC------hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcH
Q 008705 390 AIDAYRRAVDINPRD------YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHML 457 (557)
Q Consensus 390 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~ 457 (557)
|+.+|++++.+.|.. ..++..+|.+|..+|++++|+.+|++++.+.|.+ ...+..+|.++.. .|++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~--~g~~ 211 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH--RADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH--cCCH
Confidence 999999999987654 5788999999999999999999999999986543 3478889999999 9999
Q ss_pred HHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHcCCHHHHHH
Q 008705 458 EEAIKCYRRAANCNDSEA-----IALNQLAKLHHALGRDEEAAF 496 (557)
Q Consensus 458 ~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 496 (557)
++|+.+|++++ +.|... ..+..++..+ ..|+.+.+..
T Consensus 212 ~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 212 VAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999999 888653 2455566655 5677665544
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=3.9e-17 Score=153.20 Aligned_cols=199 Identities=13% Similarity=0.062 Sum_probs=165.8
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
|..+..+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 493 (557)
++..+|++++|+..|+++++++|+++..+......... ..++...........|.++.+...++.++ .|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-----HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 99999999999999999999988764322212211111 12223333344456777788877787765 689999
Q ss_pred HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccC
Q 008705 494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH-GRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 546 (557)
|++.++++++ ..|.+......++.++.+. +.+++|...|.++.+..
T Consensus 154 A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHE-------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGT-------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhc-------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999998 7899988888888888777 77999999999998753
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=3.2e-17 Score=137.58 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 357 VVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHH
Q 008705 437 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 477 (557)
Q Consensus 437 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 477 (557)
+++.+++.+|.++.. .|++++|+.+|++++.+.|+++..
T Consensus 87 ~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQ--XGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCCCcc
Confidence 888888888888888 888888888888888888776543
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=1.1e-16 Score=146.07 Aligned_cols=203 Identities=11% Similarity=-0.022 Sum_probs=165.6
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHH-------HHHH
Q 008705 275 IAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCII-------GNYY 347 (557)
Q Consensus 275 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------a~~~ 347 (557)
.|..+ ..+++..|...|.+++..+|.. +++|..+ +.++
T Consensus 13 ~~~~~-~~~d~~~A~~~F~~a~~~dP~~----------------------------------~Daw~g~~a~g~~~~~~L 57 (282)
T 4f3v_A 13 SAVSM-LPMSEARSLDLFTEITNYDESA----------------------------------CDAWIGRIRCGDTDRVTL 57 (282)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHCTTC----------------------------------HHHHHHHHHTTCCCHHHH
T ss_pred HHhcc-cCCCHHHHHHHHHHHHHhChhh----------------------------------hHHHHhHHHccCCcHHHH
Confidence 33444 5788888888888888888874 5566656 6777
Q ss_pred hhhCchHHHHHHHHHHHhcCcCCHHH---------------------HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChH
Q 008705 348 SLKGQHEKSVVYFRRALKLDKNYLSA---------------------WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR 406 (557)
Q Consensus 348 ~~~g~~~~A~~~~~~al~~~p~~~~~---------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 406 (557)
...+++.+++..+++++.+.|....+ +..++.++...|++++|.+.|..++...|.+.
T Consensus 58 ~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~- 136 (282)
T 4f3v_A 58 FRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL- 136 (282)
T ss_dssp HHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-
Confidence 77788888999999999887765443 34477889999999999999999998899888
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC--CC-hHHHHHHH
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN--DS-EAIALNQL 481 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l 481 (557)
+.+.+|.++...+++++|+.+|+++....+.. ..+++.+|.++.. +|++++|+.+|++++... |. .+.+++.+
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~--LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN--LALFTEAERRLTEANDSPAGEACARAIAWYL 214 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 99999999999999999999999887653221 3488999999999 999999999999998654 55 67799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHH
Q 008705 482 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 523 (557)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 523 (557)
|.++..+|+.++|...|++++. .+|+ ..+...|.
T Consensus 215 glaL~~lGr~deA~~~l~~a~a-------~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQT-------THPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-------HSCC-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-------cCCc-HHHHHHHh
Confidence 9999999999999999999998 5787 77666554
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=1.1e-15 Score=136.75 Aligned_cols=176 Identities=13% Similarity=0.060 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705 253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332 (557)
Q Consensus 253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (557)
+|+..|+++.+. .++.+++.+|.++...+++++|+.+|+++.+..
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------------------------------- 48 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------------------------------- 48 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------------
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------------------------------
Confidence 566777777664 678888888888888888888888888887642
Q ss_pred CCCChhHHHHHHHHHhhhC----chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCC--
Q 008705 333 DKYRPESCCIIGNYYSLKG----QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINP-- 402 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p-- 402 (557)
++.+++.+|.+|.. + ++++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++++..+
T Consensus 49 ---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 122 (212)
T 3rjv_A 49 ---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD 122 (212)
T ss_dssp ---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH
T ss_pred ---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc
Confidence 45677778888877 6 78888888888854 5678888888888887 7888888888888888777
Q ss_pred CChHHHHHHHHHHHH----hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc-C-----cHHHHHHHHHHHHhcCC
Q 008705 403 RDYRAWYGLGQAYEM----MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-H-----MLEEAIKCYRRAANCND 472 (557)
Q Consensus 403 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~-----~~~~A~~~~~~al~~~p 472 (557)
.++.+++.||.+|.. .+++++|+.+|+++++. |.++.+++.+|.+|.. . | ++++|+.+|+++.+...
T Consensus 123 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~--g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 123 AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ--GEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH--CBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc--CCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 347888888888888 77888888888888887 6667788888888876 3 2 78888888888887644
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.69 E-value=5.2e-17 Score=156.47 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=142.6
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---------------hHHHHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---------------YRAWYGLGQ 413 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~ 413 (557)
..+++++|+..|++++..+|....++..+|.++...|++++|+..|++++.++|.+ ..+|.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888889899999999999999999999999999999999988 589999999
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 493 (557)
+|..+|++++|+.+|+++++++|+++.+++.+|.++.. +|++++|+.+|+++++++|++..++..++.++...|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA--VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHH
Q 008705 494 A-AFYYKKDLERM 505 (557)
Q Consensus 494 A-~~~~~~al~~~ 505 (557)
| ...|++++..+
T Consensus 283 a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 283 REKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9 55778777644
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.68 E-value=4e-16 Score=146.33 Aligned_cols=197 Identities=7% Similarity=-0.046 Sum_probs=141.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
|.++..++.+|..+...|++++|+..|+++++.+|.+..++..+ |.++...|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~~~~~ 55 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-------------------------ALCYLKMQQPE 55 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-------------------------HHHHHHTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------HHHHHHhcCHH
Confidence 56788999999999999999999999999999999999888766 99999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhh
Q 008705 253 ESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMT 332 (557)
Q Consensus 253 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (557)
+|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...+.......... .............
T Consensus 56 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 132 (281)
T 2c2l_A 56 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERR 132 (281)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997654333222221111 1111111122233
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc-CCchHHHHHHHHHHh
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM-KNTPAAIDAYRRAVD 399 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~ 399 (557)
.+.++.+...++.++ .|++++|+..++++++.+|++......++.++... +.+++|.+.|.++.+
T Consensus 133 ~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 133 IHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444455544454443 45556666666666666555555544444444444 445555555555544
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=2.1e-15 Score=123.97 Aligned_cols=134 Identities=29% Similarity=0.585 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
++++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
.|++++|+.++++++...|.++.++..+|.++.. .|++++|+.++++++..+|.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--HccHHHHHHHHHHHHccCCC
Confidence 7777777777777777777777777777777777 77777777777777776664
No 123
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=1.7e-16 Score=132.28 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=93.4
Q ss_pred HHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705 358 VYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 437 (557)
..|++++.++|++..+++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45667777778878888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705 438 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480 (557)
Q Consensus 438 ~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 480 (557)
++.+++.+|.++.. .|++++|+.+|++++.+.|.++.....
T Consensus 85 ~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 85 EPRFPFHAAECHLQ--LGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp CTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 88888888888888 888888888888888877766554433
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.66 E-value=2.2e-16 Score=132.47 Aligned_cols=112 Identities=18% Similarity=0.092 Sum_probs=108.6
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705 391 IDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470 (557)
Q Consensus 391 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~ 470 (557)
-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++.. .|++++|+.+|++++.+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA--MGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 471 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 471 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
+|+++.+++.+|.++...|++++|+.+|+++++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999983
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.66 E-value=3.2e-15 Score=122.84 Aligned_cols=132 Identities=30% Similarity=0.451 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
+|+.+|.++...|++++|+..++++++..|.++.++..+|.++.. .|++++|+..+++++...|.++.++..+|.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH--hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555 555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705 487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 547 (557)
..|++++|+.+++++++ ..|..+.++..+|.++...|++++|..++++++..+|
T Consensus 81 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALE-------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 55555555555555554 2344444555555555555555555555555554443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=3.5e-16 Score=160.43 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=174.7
Q ss_pred chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCC----------chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC--
Q 008705 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKN----------TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH-- 419 (557)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-- 419 (557)
..++|+..+.+++..+|++..+|...+.++...|+ +++++..+.++++.+|+++.+|+..+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34688999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC-cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc----------
Q 008705 420 MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH-MLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL---------- 488 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------- 488 (557)
++++++.++.++++.+|.+..+|...+.++.. .| .++++++++.++++.+|.+..+|...+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~--l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQ--AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHH--cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 67999999999999999999999999999999 99 999999999999999999999999999999885
Q ss_pred ----CCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHH------------HHHHHHHHhccCCC
Q 008705 489 ----GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEE------------AEVYCTRLLDYTGP 548 (557)
Q Consensus 489 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~~~ 548 (557)
+.+++|++++.+++. .+|++..+|+.++.++...+++++ |+..|.+++.++|.
T Consensus 202 ~~~~~~~~eel~~~~~ai~-------~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFF-------TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHH-------HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cccHHHHHHHHHHHHHHHh-------hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 567999999999999 699999999999999999998766 56667777777654
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.65 E-value=1.7e-14 Score=136.27 Aligned_cols=176 Identities=11% Similarity=-0.050 Sum_probs=146.6
Q ss_pred cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---
Q 008705 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND--- 438 (557)
Q Consensus 368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--- 438 (557)
|.....+...+..+...|++++|++.+.++++..+... ..++.+|.++...|++++|+.+|++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44455667788888999999999999999998877653 345678889999999999999999999875543
Q ss_pred ---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHH---hcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705 439 ---SRLWIAMAQCYETEQLHMLEEAIKCYRRAA---NCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 439 ---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al---~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (557)
..++..+|.+|.. .|++++|+.+|++++ ...|.+ ..+++++|.+|..+|++++|+.+++++++... .
T Consensus 152 ~~~~~~~~~lg~~y~~--~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-~ 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-R 228 (293)
T ss_dssp THHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-h
Confidence 5689999999999 999999999999999 444543 26899999999999999999999999998543 2
Q ss_pred hcCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccC
Q 008705 509 EREGPNMVEALIFLATHCRAHGRFEEA-EVYCTRLLDYT 546 (557)
Q Consensus 509 ~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 546 (557)
.........+++.+|.++..+|++++| ..+|++++.+.
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 233445688999999999999999999 88899998763
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.1e-15 Score=121.04 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=73.8
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
...+..+|..+...|++++|+..|++++..+|+++.+|..+|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcCcHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH
Q 008705 451 TEQLHMLEEAIKCYRRAANCN------DSEAIALNQLAKLHH 486 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~ 486 (557)
. .|++++|+..|++++.++ |.+..++..++.+..
T Consensus 84 ~--~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 A--VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp H--TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred H--HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 6 666666666666666666 666666665555544
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.64 E-value=4.8e-16 Score=129.58 Aligned_cols=111 Identities=18% Similarity=0.184 Sum_probs=104.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 392 DAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 392 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
..|++++.++|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++.. .|++++|+.+|++++.++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS--LGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcC
Confidence 567888899999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 472 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 472 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
|+++.+++.+|.++...|++++|+.+|+++++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999983
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.1e-15 Score=121.05 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=110.9
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY 415 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 415 (557)
.++.+..+|..+...|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhH
Q 008705 416 EMMHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYET 451 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~ 451 (557)
..+|++++|+..|+++++++ |.+..++..++.+...
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999999888887654
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=2.2e-15 Score=130.78 Aligned_cols=130 Identities=14% Similarity=0.229 Sum_probs=117.5
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH-HHHhCCh--HH
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA-YEMMHMP--LY 423 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~--~~ 423 (557)
+...|++++|+..+++++..+|.+..+|..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899998 99
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHH
Q 008705 424 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 478 (557)
Q Consensus 424 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 478 (557)
|+.+|++++..+|+++.++..+|.++.. .|++++|+..|++++...|.++...
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFM--QANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH--cccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999999999999999999 9999999999999999999875543
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=1.5e-14 Score=129.70 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=124.2
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
..++.+|..+...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|.+..+++.+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 456789999999999999999999986 33 678999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDS----------------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 475 (557)
.|++++|+..|+++++..|.+. .++..+|.++.. .|++++|+..|++++.+.|.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK--KEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCSGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH--ccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999888766 899999999999 9999999999999999999863
No 133
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.63 E-value=1.9e-14 Score=132.87 Aligned_cols=249 Identities=10% Similarity=-0.022 Sum_probs=189.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchh
Q 008705 242 ASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFS 320 (557)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 320 (557)
..-.+-.|+|..++....++ .|. .....+.+.+++..+|++.... ..+....+...++..+. +.
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc--
Confidence 55567789999988855443 333 2346677788888888876421 11111113333333332 11
Q ss_pred HHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc--CCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705 321 ALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK--NYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398 (557)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 398 (557)
+...+++.+...+..+.++..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45556666665556677788999999999999999999999999887 889999999999999999999999999999
Q ss_pred hhCCC------ChHHHHHHHHHHHHhC--ChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705 399 DINPR------DYRAWYGLGQAYEMMH--MPLYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468 (557)
Q Consensus 399 ~~~p~------~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al 468 (557)
+.+|+ .......-|++....| ++.+|..+|+++....|+ .+..+.+ ++.. +|++++|...++.++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~--~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ--QRNIAEAQGIVELLL 238 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH--HTCHHHHHHHHHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH--cCCHHHHHHHHHHHH
Confidence 99983 2333333355566667 999999999999988886 3334444 8888 999999999999887
Q ss_pred hc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHH
Q 008705 469 NC----------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 520 (557)
Q Consensus 469 ~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 520 (557)
+. +|+++.++.+++.+...+|+ +|.++++++.+ ..|+++.+.-
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-------~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-------LDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-------TTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-------hCCCChHHHH
Confidence 76 48899999999999999998 89999999998 7899886543
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.63 E-value=2.4e-14 Score=135.35 Aligned_cols=168 Identities=10% Similarity=-0.039 Sum_probs=144.8
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-----
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD----- 404 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----- 404 (557)
....+...+..+...|++++|+..++++++..+... ..++.+|.++...|++++|+..+++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345566788899999999999999999999877644 346678999999999999999999999876543
Q ss_pred -hHHHHHHHHHHHHhCChHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC---
Q 008705 405 -YRAWYGLGQAYEMMHMPLYALHYFRKSV---FLQPNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--- 473 (557)
Q Consensus 405 -~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 473 (557)
..++..+|.+|...|++++|+.+|++++ +..|++. .++.++|.+|.. .|++++|+.++++++.+.+.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~--~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL--DSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCc
Confidence 5689999999999999999999999999 4456643 689999999999 99999999999999987532
Q ss_pred ---hHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH
Q 008705 474 ---EAIALNQLAKLHHALGRDEEA-AFYYKKDLERM 505 (557)
Q Consensus 474 ---~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 505 (557)
.+.+++++|.+|..+|++++| ..+|++++...
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 277899999999999999999 88899999854
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.62 E-value=6.3e-16 Score=137.03 Aligned_cols=159 Identities=13% Similarity=0.040 Sum_probs=122.8
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh----------------
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY---------------- 405 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------- 405 (557)
..+......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++.+.|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3455556677888888777766666666778888999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
.++..+|.++..+|++++|+.+|++++.++|.++.+++.+|.++.. .|++++|+.+|++++.++|.++.++..++.++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY--FGFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHcCCHHHHH-HHHHHHH
Q 008705 486 HALGRDEEAA-FYYKKDL 502 (557)
Q Consensus 486 ~~~g~~~~A~-~~~~~al 502 (557)
...++..++. ..|.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 8888777766 3344433
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=1.1e-14 Score=130.41 Aligned_cols=132 Identities=15% Similarity=0.082 Sum_probs=120.8
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
..++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 457788999999999999999999985 34 788999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCChH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705 452 EQLHMLEEAIKCYRRAANCNDSEA----------------IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 515 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (557)
.|++++|+..|++++...|.+. .+++.+|.++...|++++|+.+|+++++ ..|..
T Consensus 84 --~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~ 154 (213)
T 1hh8_A 84 --TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS-------MKSEP 154 (213)
T ss_dssp --TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCCSG
T ss_pred --cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH-------cCccc
Confidence 9999999999999999877655 8999999999999999999999999998 56665
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=1.5e-14 Score=123.76 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555444455555555555
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HhHHhcCcHHHHHHHHHHH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQC--YETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~~~A~~~~~~a 467 (557)
.|++++|+.+|++++..+|.+..++..++.+ +.. .|++++|+..+.++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK--QKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHcccch
Confidence 5555555555555555444444444322222 333 44444444444443
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=1.9e-14 Score=147.53 Aligned_cols=158 Identities=9% Similarity=0.065 Sum_probs=145.4
Q ss_pred CCChhHHHHHHHHHhhhCc----------hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC--CchHHHHHHHHHHhhC
Q 008705 334 KYRPESCCIIGNYYSLKGQ----------HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK--NTPAAIDAYRRAVDIN 401 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~ 401 (557)
|....+|...+.++...|+ +++++.+++++++.+|++..+|...+.++...+ +++++++.+.++++.+
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d 139 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD 139 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc
Confidence 3355666667777776666 899999999999999999999999999999999 6699999999999999
Q ss_pred CCChHHHHHHHHHHHHhC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhc--------------CcHHHHHHHHHH
Q 008705 402 PRDYRAWYGLGQAYEMMH-MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL--------------HMLEEAIKCYRR 466 (557)
Q Consensus 402 p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--------------~~~~~A~~~~~~ 466 (557)
|++..+|...+.+....| .++++++++.++++.+|.+..+|..++.++.. . +.+++|++++.+
T Consensus 140 ~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~--l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ--LHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH--HSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh--hcccccccccccccHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999887 5 678999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHH
Q 008705 467 AANCNDSEAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 467 al~~~p~~~~~~~~la~~~~~~g~~~~ 493 (557)
++.++|++..+|+.++.++...+++++
T Consensus 218 ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 218 AFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 999999999999999999999988665
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.61 E-value=2e-14 Score=122.98 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=124.9
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
...+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQL--AKLHHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~ 506 (557)
. .|++++|+.+|++++...|.+..++..+ +..+...|++++|+..+.++.....
T Consensus 93 ~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 93 A--LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp H--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 9 9999999999999999999998888554 4448889999999999999887543
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-14 Score=118.83 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=76.7
Q ss_pred cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447 (557)
Q Consensus 368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 447 (557)
|....++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+++++++..|.++.++..+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q 008705 448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 489 (557)
Q Consensus 448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 489 (557)
++.. .|++++|+.+|++++..+|.+..++..++.++..+|
T Consensus 93 ~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEA--MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHH--HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 6666 666666666666666666666666666666665554
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.60 E-value=3e-14 Score=134.61 Aligned_cols=169 Identities=12% Similarity=-0.047 Sum_probs=137.4
Q ss_pred HHHhHHHHhcCCchHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHH
Q 008705 375 TLMGHEYVEMKNTPAAIDAYRRAVDINPRDYR------AWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLW 442 (557)
Q Consensus 375 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~ 442 (557)
...+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+.+|++++...+.. ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34467778889999999999998887766544 23458888888889999999999999864432 3478
Q ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705 443 IAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 515 (557)
Q Consensus 443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (557)
..+|.+|.. .|++++|+.+|++++.. .+....+++++|.+|..+|++++|+.+++++++.... ....+..
T Consensus 159 ~~lg~~y~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~-~~~~~~~ 235 (293)
T 3u3w_A 159 NAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMALI 235 (293)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCTTH
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-cCcHHHH
Confidence 999999999 99999999999999952 2233558999999999999999999999999985433 2334556
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHhccC
Q 008705 516 VEALIFLATHCRAHG-RFEEAEVYCTRLLDYT 546 (557)
Q Consensus 516 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 546 (557)
+.+++.+|.++..+| ++++|..+|++++.+.
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 899999999999999 5799999999999763
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.60 E-value=8.3e-16 Score=136.25 Aligned_cols=165 Identities=12% Similarity=0.044 Sum_probs=129.6
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH------------
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS------------ 439 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------------ 439 (557)
......+......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++.+.|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 34445566677788888888888777776677788999999999999999999999999999999887
Q ss_pred ----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705 440 ----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 515 (557)
Q Consensus 440 ----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (557)
.++..+|.++.. .|++++|+.++++++.++|.++.+++.+|.++..+|++++|+.+|+++++ ..|.+
T Consensus 85 ~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~ 155 (198)
T 2fbn_A 85 NIEISCNLNLATCYNK--NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-------LNPNN 155 (198)
T ss_dssp HHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTC
T ss_pred HHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------HCCCc
Confidence 899999999999 99999999999999999999999999999999999999999999999999 68999
Q ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHHHhcc
Q 008705 516 VEALIFLATHCRAHGRFEEAE-VYCTRLLDY 545 (557)
Q Consensus 516 ~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 545 (557)
..++..++.++...|+..++. ..|.+++..
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998888 555555543
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.60 E-value=8.4e-15 Score=127.13 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=118.1
Q ss_pred HHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhHHhcCcH--
Q 008705 381 YVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHML-- 457 (557)
Q Consensus 381 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~-~~~~~~~~~-- 457 (557)
+...|++++|+..+++++..+|.+..+|..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +.. .|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~--~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ--ASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--TTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--cCCcch
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 888 9998
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 008705 458 EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL 519 (557)
Q Consensus 458 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 519 (557)
++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++ ..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD-------LNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh-------hCCCCccHH
Confidence 9999999999999999999999999999999999999999999999 667665433
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=1.5e-14 Score=118.13 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=75.2
Q ss_pred cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008705 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQ 447 (557)
Q Consensus 368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 447 (557)
|....++..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|+++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34445555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705 448 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 491 (557)
Q Consensus 448 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 491 (557)
++.. .|++++|+.+|++++...|.++.++..++.++...|++
T Consensus 89 ~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSS--LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHH--hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 6666 66666666666666666666666666666666655543
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.59 E-value=4.8e-14 Score=130.26 Aligned_cols=252 Identities=11% Similarity=-0.000 Sum_probs=187.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCCCcH-HHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchH
Q 008705 276 AKAQYSLREFEQVEVIFEELLRNDPYRVDDM-DMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHE 354 (557)
Q Consensus 276 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 354 (557)
.+-.+..|+|..++.- +-+..|.+.... ....+.+...|++... ...+....+...++.++. ++
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHhc--cc--
Confidence 3557789999999884 344555544332 3334556666665431 011112224445555543 22
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP--RDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 355 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
|+..|++.+...+....++..+|.++...|++++|++.+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999998887666677788999999999999999999999999887 789999999999999999999999999999
Q ss_pred hcCCC------CHHHHHHHHHHHhHHhcC--cHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008705 433 FLQPN------DSRLWIAMAQCYETEQLH--MLEEAIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYYKKDL 502 (557)
Q Consensus 433 ~~~p~------~~~~~~~l~~~~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 502 (557)
+.+|+ .......-+++... .| ++.+|...|+++....|+ .+..+++ ++..+|++++|...++.++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~--~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFA--TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHH--HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 99883 23333334555666 66 999999999999988887 3444444 8999999999999999766
Q ss_pred HHHHhhhc---CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 503 ERMEAEER---EGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 503 ~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
+....... .+|+++.++.+++.+....|+ +|.++++++.+..|...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 63211000 148899999999999999998 99999999999987654
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-14 Score=116.63 Aligned_cols=122 Identities=18% Similarity=0.114 Sum_probs=116.4
Q ss_pred CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHH
Q 008705 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 480 (557)
Q Consensus 401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 480 (557)
.|.+..+++.+|.++...|++++|+..|++++...|.++.++..+|.++.. .|++++|+.++++++...|.++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 355688999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCC
Q 008705 481 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGR 531 (557)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 531 (557)
+|.++...|++++|+.+|+++++ ..|.+..++..++.++..+|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALD-------LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-------HCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH-------hCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999 688999999999999998875
No 147
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=1.4e-16 Score=160.26 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=106.4
Q ss_pred hCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---------------hHHHHHHHHH
Q 008705 350 KGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---------------YRAWYGLGQA 414 (557)
Q Consensus 350 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~ 414 (557)
.+++++|+..|++++...|....++..+|..++..|++++|+..|++++.++|.+ ..+|+++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777777777777777777777777777776 5677777777
Q ss_pred HHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q 008705 415 YEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 494 (557)
Q Consensus 415 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 494 (557)
|..+|++++|+.+|+++++++|+++.+++.+|.++.. +|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL--MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777 77777777777777777777777777777777777777666
Q ss_pred HH
Q 008705 495 AF 496 (557)
Q Consensus 495 ~~ 496 (557)
..
T Consensus 405 ~~ 406 (457)
T 1kt0_A 405 DR 406 (457)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=1.4e-14 Score=123.90 Aligned_cols=113 Identities=16% Similarity=0.090 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAY 415 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 415 (557)
.+..++.+|.++...|++++|+.+|+++++++|.+..+|..+|.++...|++++|+..|++++.++|++..+|+.+|.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 416 EMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 416 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
..+|++++|+.+|+++++++|+++..|...+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 666666666666666666666665555444443
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=1.8e-14 Score=117.60 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=117.4
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHH
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLG 412 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 412 (557)
+|..+..+..+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++..+|++..+++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML 457 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 457 (557)
.++...|++++|+.+|++++...|+++.++..+|.++.. .|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK--LREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--HhcC
Confidence 999999999999999999999999999999999999998 8764
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.58 E-value=1.9e-14 Score=123.10 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=108.2
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
++.....+..+|.++...|++++|+..|++++.++|++..+|+.+|.+|..+|++++|+.+|+++++++|+++.+|+.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
.++.. .|++++|+.+|++++.++|+++.++...+...
T Consensus 87 ~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 87 LARFD--MADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHH--ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999 99999999999999999999988766665443
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.58 E-value=2e-15 Score=151.77 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=131.2
Q ss_pred hccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---------------HHHHHHHhH
Q 008705 315 AKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---------------LSAWTLMGH 379 (557)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~ 379 (557)
..++++++...+.......|..+..+..+|..+...|++++|+..|++++.++|.+ ..+|.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667777888899999999999999999999999999999998 689999999
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705 380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 459 (557)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 459 (557)
++..+|++++|+..|++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++.. .+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~--~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK--AKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH--HHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999988
Q ss_pred HHHH
Q 008705 460 AIKC 463 (557)
Q Consensus 460 A~~~ 463 (557)
|.+.
T Consensus 404 a~~~ 407 (457)
T 1kt0_A 404 RDRR 407 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.57 E-value=5.9e-14 Score=132.62 Aligned_cols=164 Identities=10% Similarity=-0.052 Sum_probs=138.4
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHH------HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHH
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS------AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAW 408 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~ 408 (557)
...+..+...|++++|+..++++++..+..+. .+..+|.++...|++++|+..|++++...+.. ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34567788899999999999999998776554 23358999999999999999999999965443 3378
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh------H
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQ-------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------A 475 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~ 475 (557)
..+|.+|..+|++++|+.+|+++++.. +....++.++|.+|.. +|++++|+.++++++.+.+.. +
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~--~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL--DSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999531 2234588999999999 999999999999999875432 7
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q 008705 476 IALNQLAKLHHALGR-DEEAAFYYKKDLERME 506 (557)
Q Consensus 476 ~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 506 (557)
.+++.+|.++..+|+ +++|+.+|++++....
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 899999999999995 6999999999998554
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=2.6e-14 Score=116.26 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=54.9
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-------HHHHHHH
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-------SRLWIAM 445 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l 445 (557)
++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555555555555554433 2345556
Q ss_pred HHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 446 AQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
|.++.. .|++++|+.+|++++...|+
T Consensus 90 g~~~~~--~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 90 GNAFQK--QNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHH--cCCHHHHHHHHHHHHhhCcC
Confidence 666666 66666666666666665543
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.56 E-value=1.6e-13 Score=110.87 Aligned_cols=116 Identities=28% Similarity=0.533 Sum_probs=68.0
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
..++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555655555566666666666655555555555556666665
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 488 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 488 (557)
. .|++++|+..|++++...|.++.++..++.++...
T Consensus 89 ~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 K--QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp H--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred H--hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 5 56666666666666655555555555555555443
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.55 E-value=8.7e-14 Score=123.45 Aligned_cols=153 Identities=17% Similarity=0.060 Sum_probs=76.5
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCChH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI------NPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
..|++++|...++......+....++..+|.++...|++++|+..+++++.+ .+....++..+|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666443333322244555566666666666666666666666552 2223444555555555555555
Q ss_pred HHHHHHHHHHhc---CCCC----HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC--h----HHHHHHHHHHHHHcC
Q 008705 423 YALHYFRKSVFL---QPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--E----AIALNQLAKLHHALG 489 (557)
Q Consensus 423 ~A~~~~~~a~~~---~p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g 489 (557)
+|+.++++++.+ .+++ ..++..+|.++.. .|++++|+.++++++.+.+. + ..++..+|.++...|
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALH--FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 555555555554 2222 2344555555555 55555555555555543211 1 123455555555555
Q ss_pred CHHHHHHHHHHHHH
Q 008705 490 RDEEAAFYYKKDLE 503 (557)
Q Consensus 490 ~~~~A~~~~~~al~ 503 (557)
++++|..+++++++
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=5.5e-14 Score=116.10 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
+..+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++.++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34455555555555555666666666666555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCC
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p~ 437 (557)
++...|++++|+..|++++.+.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555554
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.55 E-value=5.9e-14 Score=115.92 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=104.0
Q ss_pred cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHH
Q 008705 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAM 445 (557)
Q Consensus 366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 445 (557)
.+|..+..+..+|.++...|++++|+..|++++..+|++..++..+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhcCcHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHc
Q 008705 446 AQCYETEQLHMLEEAIKCYRRAANCNDS-----EAIALNQLAKLHHAL 488 (557)
Q Consensus 446 ~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~ 488 (557)
|.++.. .|++++|+..|++++.+.|+ +..+...+..+..+.
T Consensus 84 ~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 84 GQCQLE--MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHH--HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999988877 556666666555443
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=5.2e-14 Score=113.31 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMM 418 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 418 (557)
.++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCC
Q 008705 419 HMPLYALHYFRKSVFLQPND 438 (557)
Q Consensus 419 ~~~~~A~~~~~~a~~~~p~~ 438 (557)
|++++|+..|+++++.+|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 55555555555555555543
No 159
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=1.1e-14 Score=119.98 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=54.8
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHhhCCC-------C-----hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-------
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVDINPR-------D-----YRAWYGLGQAYEMMHMPLYALHYFRKSVFL------- 434 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 434 (557)
+..+|..+...|++++|+..|+++++++|+ + ..+|.++|.++..+|++++|+..|++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344444444444444444444444444444 2 225555555555555555555555555555
Q ss_pred CCCCHHHH----HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 435 QPNDSRLW----IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 435 ~p~~~~~~----~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
+|+++.+| +++|.++.. +|++++|+.+|++++++.|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~--lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDG--LGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHhHHHHHHH--CCCHHHHHHHHHHHHhcCCCcHH
Confidence 66666666 666666666 66666666666666666555433
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=2.4e-13 Score=109.84 Aligned_cols=115 Identities=29% Similarity=0.569 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 416 (557)
+.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
..|++++|+.+|++++..+|.++.++..+|.++..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998876
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.54 E-value=4.7e-14 Score=113.59 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=93.5
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
..++.+|..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 452 EQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 452 ~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
.|++++|+..|+++++.+|.+..
T Consensus 98 --~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 --EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --HHHHHHHHHHHHHHHC-------
T ss_pred --cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998653
No 162
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.53 E-value=6.8e-14 Score=124.14 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=128.3
Q ss_pred HhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHh------cCcCCHHHHHHHhHHHHhcCCc
Q 008705 314 YAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK------LDKNYLSAWTLMGHEYVEMKNT 387 (557)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~~~~ 387 (557)
...|+++++...++.+....+..+.++..+|.++...|++++|+.++++++. ..+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4567888888855555444446788999999999999999999999999998 3455667899999999999999
Q ss_pred hHHHHHHHHHHhh---CCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHhHHhc
Q 008705 388 PAAIDAYRRAVDI---NPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP--ND----SRLWIAMAQCYETEQL 454 (557)
Q Consensus 388 ~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~l~~~~~~~~~ 454 (557)
++|+..+++++.+ .+++ ..++..+|.++...|++++|+.++++++.+.+ .+ ..++..+|.++.. .
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~ 160 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ--E 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH--C
Confidence 9999999999997 4433 56789999999999999999999999997642 22 2356899999999 9
Q ss_pred CcHHHHHHHHHHHHhcC
Q 008705 455 HMLEEAIKCYRRAANCN 471 (557)
Q Consensus 455 ~~~~~A~~~~~~al~~~ 471 (557)
|++++|+.++++++.+.
T Consensus 161 g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIF 177 (203)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=3.3e-14 Score=117.14 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcC-------CHH-----HHHHHhHHHHhcCCchHHHHHHHHHHhh----
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKN-------YLS-----AWTLMGHEYVEMKNTPAAIDAYRRAVDI---- 400 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 400 (557)
...+...|+.+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456788999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCChHHH----HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 401 ---NPRDYRAW----YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 401 ---~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
+|++..+| +++|.++..+|++++|+..|++++++.|++..+...+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 99999999999999999999999999998865443333
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.53 E-value=1.3e-13 Score=112.07 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHH
Q 008705 439 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 518 (557)
Q Consensus 439 ~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 518 (557)
+.++..+|.++.. .|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++..+......+....+
T Consensus 8 A~a~~~lG~~~~~--~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYK--QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4567788888888 89999999999999988898888888999999999999999999999888543322223344678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 008705 519 LIFLATHCRAHGRFEEAEVYCTRLLDYTGPV 549 (557)
Q Consensus 519 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 549 (557)
+..+|.++..+|++++|+++|++++...|+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 9999999999999999999999999987654
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=3.3e-13 Score=107.77 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 418 MHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
.|++++|+..|+++++.+|+++.++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 5555555555555555555555554444443
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=3.5e-13 Score=107.65 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=109.3
Q ss_pred CHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705 370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449 (557)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 449 (557)
....+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 008705 450 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 485 (557)
Q Consensus 450 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 485 (557)
.. .|++++|+..+++++..+|.++.++..++.+.
T Consensus 83 ~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EF--LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HH--TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HH--HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99 99999999999999999999999999888775
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=7.3e-14 Score=119.18 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhc------------------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKL------------------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAV 398 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 398 (557)
+..+...|..++..|++++|+..|.+++.+ +|....++.++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888888888888888888888887 44444555555555555555555555555555
Q ss_pred hhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHHh
Q 008705 399 DINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDS-RLWIAMAQCYE 450 (557)
Q Consensus 399 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~ 450 (557)
.++|+++.+|+.+|.++..+|++++|+..|++++.++|+++ .+...++.+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555 33444444433
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.52 E-value=8e-14 Score=118.93 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=108.5
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhh------------------CCCChHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDI------------------NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
...+...|..++..|++++|+..|++++.+ +|.+..+|.++|.+|..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567889999999999999999999999998 66777899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCC
Q 008705 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA-IALNQLAKLHHALGR 490 (557)
Q Consensus 433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 490 (557)
.++|+++.+++.+|.++.. +|++++|+..|++++.++|+++ .+...++.+....++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIA--AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHH--HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999998 667777777655443
No 169
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.51 E-value=5.9e-11 Score=119.80 Aligned_cols=347 Identities=10% Similarity=-0.012 Sum_probs=212.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHH------------HhhcCC-C---hhHHHH
Q 008705 175 DPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDI------------LNSLNL-N---NHWMKD 238 (557)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~------------~~~l~~-~---~~~~~~ 238 (557)
.+...|..+...+-.|+++.+..+|++++...| +...|...+........ +..+.. + ..|..+
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 344445555555555889999999999999888 77788877665433211 000110 1 112111
Q ss_pred HHHHHHHH----HHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------------hcccHHHHHHHHHHHHHhCC
Q 008705 239 YFLASAYQ----ELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQY--------------SLREFEQVEVIFEELLRNDP 300 (557)
Q Consensus 239 ~~la~~~~----~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--------------~~g~~~~A~~~~~~~l~~~p 300 (557)
...+. ..++.+.+..+|++++..-+....-+...-..+. ..+.+..|...|+.+....+
T Consensus 92 ---i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 92 ---IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp ---HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 11111 3466677777777777742222222211111111 11233444555555554332
Q ss_pred C-CCCcHHHHHHHHHhc--cc-----hhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHH
Q 008705 301 Y-RVDDMDMYSNVLYAK--EC-----FSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS 372 (557)
Q Consensus 301 ~-~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 372 (557)
. ....|..+....... +- ...+..++++++...|..+..|+..+..+...|+.++|...|++++.. |.+..
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence 2 111222222221111 00 233456777777778888888888888888888888888888888888 87776
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhC----------CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDIN----------PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW 442 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 442 (557)
.|...+... +.++....+..+.... +....+|...+......+..+.|...|.++ ...+....+|
T Consensus 248 l~~~y~~~~----e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~ 322 (493)
T 2uy1_A 248 LSLYYGLVM----DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVF 322 (493)
T ss_dssp HHHHHHHHT----TCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHH
T ss_pred HHHHHHhhc----chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHH
Confidence 666544331 1112111111111000 112356777777777788899999999999 4333456677
Q ss_pred HHHHHHHhHHhcC-cHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 008705 443 IAMAQCYETEQLH-MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 521 (557)
Q Consensus 443 ~~l~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 521 (557)
...+.+... .+ +.+.|..+|+.+++..|+.+..+...+......|+.+.|...|+++. .....|..
T Consensus 323 i~~A~lE~~--~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----------k~~~lw~~ 389 (493)
T 2uy1_A 323 IYCAFIEYY--ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----------KTSRMWDS 389 (493)
T ss_dssp HHHHHHHHH--HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----------CBHHHHHH
T ss_pred HHHHHHHHH--HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHHHH
Confidence 777766665 55 58999999999999888888888888888888999999998888862 24677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc
Q 008705 522 LATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 522 la~~~~~~g~~~~A~~~~~~al~ 544 (557)
........|+.+.+...+++++.
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888999999998888875
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.3e-13 Score=111.14 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=81.8
Q ss_pred CCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC---HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHH
Q 008705 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY---LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWY 409 (557)
Q Consensus 333 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 409 (557)
.+.....++.+|..+...|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556667777777777777777777777777777765 666777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705 410 GLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449 (557)
Q Consensus 410 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 449 (557)
.+|.++...|++++|+.+|++++.++|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7777777777777777777777777777766666666554
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6e-13 Score=133.27 Aligned_cols=207 Identities=10% Similarity=-0.044 Sum_probs=171.1
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----------------HHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----------------SAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
|.+....|.-+...|++++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666778888999999999999999999877642 3578999999999999999999999998
Q ss_pred hCCCCh------HHHHHHHHHHHHhCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 400 INPRDY------RAWYGLGQAYEMMHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 400 ~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
..+... .+...+|.++...|++++|+.++++++... +....++..+|.++.. .|++++|+.+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ--KKQYKDSLALINDL 161 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH--HTCHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 765442 345668888888999999999999998753 2336788999999999 99999999999998
Q ss_pred Hhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008705 468 ANC------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTR 541 (557)
Q Consensus 468 l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 541 (557)
+.. .+....++..++.+|...|++++|..++++++................+..+|.++...|++++|..+|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 865 33446799999999999999999999999999844332111122356788899999999999999999999
Q ss_pred Hhcc
Q 008705 542 LLDY 545 (557)
Q Consensus 542 al~~ 545 (557)
+++.
T Consensus 242 a~~~ 245 (434)
T 4b4t_Q 242 SFES 245 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.2e-13 Score=111.65 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=113.1
Q ss_pred cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHH
Q 008705 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLW 442 (557)
Q Consensus 366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 442 (557)
.+|.....+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+.+|++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 008705 443 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 487 (557)
Q Consensus 443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 487 (557)
..+|.++.. .|++++|+.+|++++.++|++..++..++.+...
T Consensus 103 ~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEK--LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHH--HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999 9999999999999999999999998888877543
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.48 E-value=9.4e-13 Score=107.30 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH---HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC---hHHHHHHH
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL---SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD---YRAWYGLG 412 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~ 412 (557)
.++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345556666666666666666666666666555 556666666666666666666666666666655 55566666
Q ss_pred HHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 413 QAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC 448 (557)
Q Consensus 413 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 448 (557)
.++..+|++++|+..|++++...|+++.+......+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 666666666666666666666666555544444333
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.48 E-value=1e-13 Score=133.48 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH-----------------HHHHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL-----------------SAWTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
+..+..+|..+...|++++|+.+|++++...|.+. .++.++|.++..+|++++|+..|++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46678899999999999999999999999998865 2555566666666666666666666666
Q ss_pred hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 400 INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 400 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
++|++..+|+.+|.+|..+|++++|+..|+++++++|+++.++..++.+... ..+..+++...|.+++...|.+
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~-~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ-EKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCC
Confidence 6666666666666666666666666666666666666655555555555322 0344555555556555555544
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=2.9e-14 Score=143.78 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 416 (557)
+..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++..+|++++|+..|+++++++|++..+++.+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHH--HhHHhcCcHHHHHHHHH-----------HHHhcCCChH--------
Q 008705 417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQC--YETEQLHMLEEAIKCYR-----------RAANCNDSEA-------- 475 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~--~~~~~~~~~~~A~~~~~-----------~al~~~p~~~-------- 475 (557)
.+|++++|+..|+++++++|++..++..++.+ +.. .|++++|+..++ +++.+.|...
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 163 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK--QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH--HHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGS
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHhccccccchhHhhhhhhhcccccccccccccccc
Confidence 99999999999999999999999999999998 778 899999999999 7777765431
Q ss_pred ---HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHH
Q 008705 476 ---IALNQLAKLHHALGR--DEEAAFYYKKDLERME 506 (557)
Q Consensus 476 ---~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~ 506 (557)
..+..+...+...+. ...+...+.++.+.+.
T Consensus 164 itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~ 199 (477)
T 1wao_1 164 VTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLS 199 (477)
T ss_dssp CCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHc
Confidence 223333444444443 3444456666666544
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.47 E-value=2.9e-13 Score=107.02 Aligned_cols=104 Identities=16% Similarity=0.272 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC--ChHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR--DYRAWYGL 411 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l 411 (557)
|.++.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4444444445555555555555555555555554444444444555554555555555555555544444 44444444
Q ss_pred HHHHHHh-CChHHHHHHHHHHHhcCCC
Q 008705 412 GQAYEMM-HMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 412 ~~~~~~~-~~~~~A~~~~~~a~~~~p~ 437 (557)
|.++... |++++|+.++++++...|.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 4444444 4444454444444444443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.47 E-value=1.1e-12 Score=106.84 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=103.9
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY---RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMA 446 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~ 446 (557)
+++.+|..+...|++++|+..|++++..+|++. .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467889999999999999999999999999988 799999999999999999999999999999999 88999999
Q ss_pred HHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q 008705 447 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 490 (557)
Q Consensus 447 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 490 (557)
.++.. .|++++|+..|++++...|+++.+......+-...++
T Consensus 84 ~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 84 LSQYG--EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHH--cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99999 9999999999999999999988877666665554443
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=5.2e-13 Score=105.56 Aligned_cols=108 Identities=17% Similarity=0.225 Sum_probs=103.0
Q ss_pred cCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC--CHHHHH
Q 008705 366 LDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN--DSRLWI 443 (557)
Q Consensus 366 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~ 443 (557)
++|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368888899999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhHHhc-CcHHHHHHHHHHHHhcCCChH
Q 008705 444 AMAQCYETEQL-HMLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 444 ~l~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~ 475 (557)
.+|.++.. . |++++|++++++++...|.++
T Consensus 81 ~l~~~~~~--~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 81 AKADALRY--IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTT--CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 9 999999999999999988753
No 179
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.45 E-value=5.3e-10 Score=112.83 Aligned_cols=375 Identities=9% Similarity=0.022 Sum_probs=226.8
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcCCch--hhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRS--VFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS 168 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (557)
-..|--+...|=.|++++|..+|++++...+ .....|+.|..... +. ...+..+.......
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~---~~--------------~~~i~~~fe~al~~ 77 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVS---QK--------------KFKLYEVYEFTLGQ 77 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC---------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC---ch--------------HHHHHHHHHHHHHH
Confidence 5667777778888999999999999988433 33333444443211 00 01112222222222
Q ss_pred hcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHHHhccCCCCHH-HHHHHHHhhhcHHHHhhcCCChhHHHHHHHHH
Q 008705 169 WKNGTVDPFGLYLYGIVLK----DKGNENLARTVFVESVNSYPWNWN-AWSELKSLCTSIDILNSLNLNNHWMKDYFLAS 243 (557)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~p~~~~-a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~ 243 (557)
...++.++.+|......+. .+|+.+.+..+|++++..-+.+.. .|.....+....... .. ...
T Consensus 78 vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~---------~~---~~~ 145 (493)
T 2uy1_A 78 FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI---------TG---KKI 145 (493)
T ss_dssp STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH---------HH---HHH
T ss_pred cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc---------cH---HHH
Confidence 3346778888888887765 357788999999999995433332 232222221111000 00 001
Q ss_pred HHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Q 008705 244 AYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYSL-------REFEQVEVIFEELLRNDPYRVDDMDMYSNVLYA 315 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 315 (557)
+-...+.+..|...|+.+....+. +...|......-... +........|++++...|..+..|..++..+..
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 111223344444444444432222 233333322221111 002344556666666666666666666666666
Q ss_pred ccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHh----------cCcCCHHHHHHHhHHHHhcC
Q 008705 316 KECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK----------LDKNYLSAWTLMGHEYVEMK 385 (557)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------~~p~~~~~~~~l~~~~~~~~ 385 (557)
.++.+.+..++.+++.. |.+...+...+... ..+ +....+..+.. ..+....+|...+....+.+
T Consensus 226 ~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 66666666666666666 66555554433331 111 11111111110 11123466888888888888
Q ss_pred CchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHH
Q 008705 386 NTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH-MPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY 464 (557)
Q Consensus 386 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~ 464 (557)
+.+.|...|.++ ...+.....|...+.+....+ +.+.|...|+.+++..|+++..|...+..... .|+.+.|...|
T Consensus 301 ~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~--~~~~~~aR~l~ 377 (493)
T 2uy1_A 301 GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR--IGDEENARALF 377 (493)
T ss_dssp CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHH
T ss_pred CHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHH
Confidence 999999999999 443345667777777766666 69999999999999999999998888888888 99999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008705 465 RRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 465 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 506 (557)
+++ +.....|......-...|+.+.+...+++++..+.
T Consensus 378 er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 378 KRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 998 34567788888888888999999999999998554
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=3.3e-13 Score=110.85 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=72.3
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCch----------HHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTP----------AAIDAYRRAVDINPRDYRAWYGLGQAYEMM 418 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 418 (557)
+.+.+++|+..++++++++|+++.+|+++|.++...++++ +|+..|+++++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999998888887754 888888888888888888888888888776
Q ss_pred C-----------ChHHHHHHHHHHHhcCCCCHH
Q 008705 419 H-----------MPLYALHYFRKSVFLQPNDSR 440 (557)
Q Consensus 419 ~-----------~~~~A~~~~~~a~~~~p~~~~ 440 (557)
| ++++|+.+|+++++++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 4 666677777777666666543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=7.4e-13 Score=107.93 Aligned_cols=112 Identities=12% Similarity=0.157 Sum_probs=58.9
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC-------HHHHHH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND-------SRLWIA 444 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~ 444 (557)
..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555554443 455555
Q ss_pred HHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 445 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
+|.++.. .|++++|+.+|++++...| ++.....++.+..
T Consensus 85 la~~~~~--~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFK--EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHH--hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 5555555 5555555555555555555 3444444444443
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=7.2e-13 Score=108.01 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC-------hHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD-------YRAW 408 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~ 408 (557)
.+..++.+|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..+++++...|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 357788999999999999999999999999999999999999999999999999999999999998877 8899
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
+.+|.++...|++++|+.+|++++...| ++..+..++.+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 68888888887765
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.44 E-value=1.2e-13 Score=132.92 Aligned_cols=134 Identities=10% Similarity=0.106 Sum_probs=94.5
Q ss_pred cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh-----------------HHHHHHHHHHHHhCChHHHHHHHHH
Q 008705 368 KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY-----------------RAWYGLGQAYEMMHMPLYALHYFRK 430 (557)
Q Consensus 368 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~l~~~~~~~~~~~~A~~~~~~ 430 (557)
+.....+..+|..+...|++++|+..|++++...|.+. .+|+++|.+|..+|++++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33456788999999999999999999999999999876 4899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 008705 431 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL-HHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 431 a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 503 (557)
+++++|+++.+++.+|.++.. +|++++|+.+|++++.++|++..++..++.+ ....+..+++...|.+++.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~--~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAE--LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999 9999999999999999999999999999998 4456778888999999988
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.43 E-value=3.6e-14 Score=143.11 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
++..+|.++...|++++|+.+|+++++++|+++.++..+|.++.. +|++++|+..++++++++|.++.+++++|.+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344556666666666666666666666666666666666666666 666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 008705 487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH--CRAHGRFEEAEVYCT 540 (557)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~ 540 (557)
.+|++++|+..|+++++ ..|++..++..++.+ +.+.|++++|++.++
T Consensus 86 ~~g~~~eA~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHH-------HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666666666666 455555566666665 666666666666666
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=1.7e-12 Score=126.13 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYE 416 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 416 (557)
+..+..+|..+...|++++|+..|+++++..+... +..........+|.+..+|.++|.+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788889999999999999999888432211 001122222344444555555555555
Q ss_pred HhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 008705 417 MMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 495 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 495 (557)
.+|++++|+.+++++++++|+++.+++.+|.++.. +|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG--LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555 555555555555555555555555555555555555555544
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.7e-12 Score=128.45 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhh
Q 008705 270 YIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSL 349 (557)
Q Consensus 270 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 349 (557)
......|..+...|+|++|++.|.++++..|...+.....+......+ ....++..+|.+|..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~al~~l~~~y~~ 67 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN-----------------EQETSILELGQLYVT 67 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHH
Confidence 456677888899999999999999999998876543221110000000 012346779999999
Q ss_pred hCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC------ChHHHHHHHHHHHH
Q 008705 350 KGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR------DYRAWYGLGQAYEM 417 (557)
Q Consensus 350 ~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 417 (557)
.|++++|+.++.+++...+... .+...+|.++...|++++|+..+++++...+. ...++..+|.+|..
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 9999999999999988765433 23556788888889999999999999875332 26688899999999
Q ss_pred hCChHHHHHHHHHHHhcC------CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC---Ch----HHHHHHHHHH
Q 008705 418 MHMPLYALHYFRKSVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND---SE----AIALNQLAKL 484 (557)
Q Consensus 418 ~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p---~~----~~~~~~la~~ 484 (557)
.|++++|+.++++++... +....++..+|.+|.. .|++++|..++++++...+ .. ...+..+|.+
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK--LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 999999999999987652 3336688999999999 9999999999999987632 11 3467788999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHH
Q 008705 485 HHALGRDEEAAFYYKKDLERME 506 (557)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~~~~ 506 (557)
+...|++++|..+|.++++...
T Consensus 226 ~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhh
Confidence 9999999999999999987543
No 187
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=6.7e-13 Score=109.07 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=85.7
Q ss_pred HhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 382 VEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP----------LYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 382 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
.+.+.+++|++.++++++++|+++.+|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3556799999999999999999999999999999998875 599999999999999999999999999998
Q ss_pred HhcC-----------cHHHHHHHHHHHHhcCCChH
Q 008705 452 EQLH-----------MLEEAIKCYRRAANCNDSEA 475 (557)
Q Consensus 452 ~~~~-----------~~~~A~~~~~~al~~~p~~~ 475 (557)
+| ++++|+.+|++|++++|++.
T Consensus 93 --lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 --FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp --HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred --hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 75 89999999999999999875
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.41 E-value=1.6e-12 Score=126.37 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=98.8
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYE 450 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 450 (557)
...+..+|..+...|++++|+..|+++++..+... +.....+.....|.+..++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999998654321 112244555677888999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 451 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 451 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
. +|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++.
T Consensus 285 ~--~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 K--MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp H--TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h--ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9 999999999999999999999999999999999999999999999999985
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.41 E-value=3.7e-13 Score=107.71 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=64.1
Q ss_pred hCchHHHHHHHHHHHhc---CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHH
Q 008705 350 KGQHEKSVVYFRRALKL---DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 350 ~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
.|++++|+.+|+++++. +|++..++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46667777777777776 466667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHH
Q 008705 427 YFRKSVFLQPNDSRLWI 443 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~ 443 (557)
.|++++...|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 77777777777665543
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.40 E-value=2.2e-12 Score=109.43 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC------
Q 008705 406 RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------ 473 (557)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~------ 473 (557)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++.. .|++++|+.++++++...+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 455666777777777777777777766654321 2467778888888 88888888888888776432
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 008705 474 EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYT 546 (557)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 546 (557)
...++..+|.++...|++++|+.+++++++..... ...+....++..+|.++...|++++|..++++++++.
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 25578889999999999999999999998854332 2235567788999999999999999999999998764
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.40 E-value=4.2e-13 Score=107.39 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=85.9
Q ss_pred hcCCchHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705 383 EMKNTPAAIDAYRRAVDI---NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 459 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 459 (557)
..|++++|+..|+++++. +|++..++..+|.+|..+|++++|+.+|+++++.+|+++.++..+|.++.. .|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN--LGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH--cCCHHH
Confidence 468999999999999999 588899999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhcCCChHHHHHHH
Q 008705 460 AIKCYRRAANCNDSEAIALNQL 481 (557)
Q Consensus 460 A~~~~~~al~~~p~~~~~~~~l 481 (557)
|+..|++++...|+++.+....
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999988765433
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.34 E-value=6e-12 Score=106.71 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCH------HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYL------SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
.++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 3455566666666666666666666665533211 23444445555555555555555444443222100
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC------ChHHHHHHHHHHH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND------SEAIALNQLAKLH 485 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~ 485 (557)
.+....++..+|.++.. .|++++|+.++++++...+ ....++..+|.++
T Consensus 85 -----------------------~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 85 -----------------------RAVEAQSCYSLGNTYTL--LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 00013345556666666 6666666666666654421 1234566667777
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 008705 486 HALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 486 ~~~g~~~~A~~~~~~al~~ 504 (557)
...|++++|..+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 7777777777777666653
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.21 E-value=9.2e-11 Score=93.23 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705 355 KSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 355 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 434 (557)
+|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.+..+|+.+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CC
Q 008705 435 QP 436 (557)
Q Consensus 435 ~p 436 (557)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.21 E-value=8.3e-11 Score=93.49 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 388 PAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 388 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
++|+..|++++..+|+++.+++.+|.++...|++++|+.+|++++..+|.++.+|..+|.++.. .|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG--QGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HhcCCCh
Q 008705 468 ANCNDSE 474 (557)
Q Consensus 468 l~~~p~~ 474 (557)
+.+.|..
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 9887753
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.6e-11 Score=96.88 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCC------hHHHHH
Q 008705 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRD------YRAWYG 410 (557)
Q Consensus 337 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 410 (557)
+..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666655 555555
Q ss_pred HHHHHHHhCChHHHHHHH
Q 008705 411 LGQAYEMMHMPLYALHYF 428 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~ 428 (557)
+|.++..+|+++.|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 555555555555554443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.8e-11 Score=96.52 Aligned_cols=92 Identities=9% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC------HHHHHH
Q 008705 371 LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND------SRLWIA 444 (557)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~ 444 (557)
..++..+|.++...|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|+++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666665 555666
Q ss_pred HHHHHhHHhcCcHHHHHHHH
Q 008705 445 MAQCYETEQLHMLEEAIKCY 464 (557)
Q Consensus 445 l~~~~~~~~~~~~~~A~~~~ 464 (557)
+|.++.. .|++++|+..+
T Consensus 84 ~~~~~~~--~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGA--VGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHH--HHCCCCCSSSS
T ss_pred HHHHHHH--HHhHhhhHhHH
Confidence 6666665 55555554433
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=4e-10 Score=85.02 Aligned_cols=77 Identities=29% Similarity=0.570 Sum_probs=32.1
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCY 449 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 449 (557)
++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|+++++++|+++.++..+|.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444433
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.14 E-value=3.5e-10 Score=85.35 Aligned_cols=85 Identities=28% Similarity=0.491 Sum_probs=80.9
Q ss_pred CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHH
Q 008705 403 RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 482 (557)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 482 (557)
.+..+++.+|.++...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+.+|++++..+|.++.++..+|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3577899999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcC
Q 008705 483 KLHHALG 489 (557)
Q Consensus 483 ~~~~~~g 489 (557)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998765
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.08 E-value=1.8e-09 Score=88.64 Aligned_cols=113 Identities=13% Similarity=0.046 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHH
Q 008705 419 HMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEA 494 (557)
Q Consensus 419 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 494 (557)
+++++|+.+|+++.+....... +|.+|.. .+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~--g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNS--QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCT--TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHc--CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4567777777777776543333 7777777 77777788888877765 567777778888777 7788888
Q ss_pred HHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCC
Q 008705 495 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 495 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 548 (557)
+.+|+++.+ . .++.+++.||.+|.. .+++++|..+|+++.+...+
T Consensus 81 ~~~~~~Aa~-------~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACG-------L--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHH-------T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHc-------C--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 888888776 2 456777788888877 77888888888888776544
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.03 E-value=1.9e-09 Score=107.81 Aligned_cols=132 Identities=12% Similarity=0.041 Sum_probs=112.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCCh---
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFL-----QPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSE--- 474 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~--- 474 (557)
.+..+..+|++++|+..+++++++ .|++ ..++.++|.+|.. +|+|++|+.++++++.+ .|++
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~--~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY--LQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 444566789999999999999875 3455 4578899999999 99999999999999875 3444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-hcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE-EREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
...+++||.+|..+|++++|+.+|+++++..... +...|...+....++.++..+|.+++|...|.++.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5589999999999999999999999999966654 456688888899999999999999999999999865
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=1.1e-09 Score=84.46 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=36.9
Q ss_pred CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 401 NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 401 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|..+|.++.. .|++++|+..|++++.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER--LDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhh
Confidence 455555555555555555555555555555555555555555555555555 555555555555555443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=1.5e-09 Score=83.62 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=47.6
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5666667777777777777777777777777777777777777777777777777777777777766544
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.98 E-value=2.1e-08 Score=94.22 Aligned_cols=132 Identities=9% Similarity=-0.007 Sum_probs=101.6
Q ss_pred HHHHHHhhh---CchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC----CchHHHH----HHHH--HHhhCCCChHHH
Q 008705 342 IIGNYYSLK---GQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK----NTPAAID----AYRR--AVDINPRDYRAW 408 (557)
Q Consensus 342 ~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~----~~~~--al~~~p~~~~~~ 408 (557)
..|..+... ..+.+|+.+|+++++++|++..++..++.+|.... ....... .++. ++..+|.++.++
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~ 280 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY 280 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHH
Confidence 344444443 44689999999999999999999888877775221 1111112 2221 224678889999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHH
Q 008705 409 YGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 476 (557)
Q Consensus 409 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 476 (557)
..++..+...|++++|+..+++++.++|+ ...|..+|.++.. .|++++|+..|++|+.++|..+.
T Consensus 281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~--~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 281 QIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM--KGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999998899999999999999999974 7788899999999 99999999999999999998764
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.98 E-value=7.9e-10 Score=84.99 Aligned_cols=90 Identities=19% Similarity=0.285 Sum_probs=62.9
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHH-HHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLS-AWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMH 419 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 419 (557)
+..|..+...|++++|+..|+++++.+|.+.. +++.+|.++...|++++|+..|++++.++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34666777777777777777777777777777 77777777777777777777777777777777766633 4
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 008705 420 MPLYALHYFRKSVFLQPND 438 (557)
Q Consensus 420 ~~~~A~~~~~~a~~~~p~~ 438 (557)
.+.+++..|+++...+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4556666666666555543
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.95 E-value=2.4e-08 Score=81.89 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=45.1
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHh----cCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH-
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVE----MKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM- 417 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 417 (557)
+|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.||.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 455555444555555555555543 344555555555554 45555555555555543 345555555555555
Q ss_pred ---hCChHHHHHHHHHHHhc
Q 008705 418 ---MHMPLYALHYFRKSVFL 434 (557)
Q Consensus 418 ---~~~~~~A~~~~~~a~~~ 434 (557)
.+++++|+.+|+++.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 45555555555555544
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.92 E-value=9.9e-08 Score=85.80 Aligned_cols=106 Identities=17% Similarity=0.102 Sum_probs=68.7
Q ss_pred cCcCCHHHHHHHhHHHHh-----cCC------chHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHh-----CChHHHHHH
Q 008705 366 LDKNYLSAWTLMGHEYVE-----MKN------TPAAIDAYRRAVDINPR--DYRAWYGLGQAYEMM-----HMPLYALHY 427 (557)
Q Consensus 366 ~~p~~~~~~~~l~~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~~ 427 (557)
.+|+++++++..|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 356666665555544322 122 35667777777777776 455777777777764 777777777
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHhHHhc-CcHHHHHHHHHHHHhcCCC
Q 008705 428 FRKSVFLQPND-SRLWIAMAQCYETEQL-HMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 428 ~~~a~~~~p~~-~~~~~~l~~~~~~~~~-~~~~~A~~~~~~al~~~p~ 473 (557)
|+++++++|+. ..+++.+|..+.. . |++++|.+++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~--~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCI--PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTT--TTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCCC
Confidence 77777777754 7777777777665 4 6777777777777776655
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.90 E-value=6.9e-09 Score=103.74 Aligned_cols=126 Identities=13% Similarity=-0.015 Sum_probs=102.7
Q ss_pred HhHHHHhcCCchHHHHHHHHHHhh-----CCCC---hHHHHHHHHHHHHhCChHHHHHHHHHHHhc-----CCCCH---H
Q 008705 377 MGHEYVEMKNTPAAIDAYRRAVDI-----NPRD---YRAWYGLGQAYEMMHMPLYALHYFRKSVFL-----QPNDS---R 440 (557)
Q Consensus 377 l~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~---~ 440 (557)
.+..+..+|++++|+..+++++++ .|++ ..++.+||.+|..+|+|++|+.++++++.+ .|+++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344566789999999999999875 3444 567889999999999999999999999875 35554 4
Q ss_pred HHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEA---IALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
.++++|.+|.. +|++++|+.+|++|+.+ .|+++ .....++.++..++.+++|...|.++.+.
T Consensus 395 ~l~nLa~~~~~--~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWH--AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999 99999999999999875 45554 46778999999999999999999998774
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.89 E-value=5.8e-08 Score=91.27 Aligned_cols=145 Identities=15% Similarity=0.015 Sum_probs=111.7
Q ss_pred HHhcCcCCHHH--HHHHhHHHHhcCC---chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCh----HHHHH----HHH
Q 008705 363 ALKLDKNYLSA--WTLMGHEYVEMKN---TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMP----LYALH----YFR 429 (557)
Q Consensus 363 al~~~p~~~~~--~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~----~~A~~----~~~ 429 (557)
+....|.+..+ ++..|..++..++ ..+|+.+|+++++++|+...++..++.+|...... ..... .++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 33445665554 3455666665544 57899999999999999999999888888532111 11111 122
Q ss_pred --HHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 008705 430 --KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 507 (557)
Q Consensus 430 --~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 507 (557)
.++...|.++.++..++..+.. .|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~--~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr---- 338 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALV--KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN---- 338 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHhcccCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----
Confidence 2335679999999999999998 99999999999999999975 67888999999999999999999999999
Q ss_pred hhcCCcchHH
Q 008705 508 EEREGPNMVE 517 (557)
Q Consensus 508 ~~~~~~~~~~ 517 (557)
.+|..+.
T Consensus 339 ---L~P~~~t 345 (372)
T 3ly7_A 339 ---LRPGANT 345 (372)
T ss_dssp ---HSCSHHH
T ss_pred ---cCCCcCh
Confidence 6787653
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.88 E-value=5.8e-08 Score=87.27 Aligned_cols=110 Identities=16% Similarity=0.023 Sum_probs=93.3
Q ss_pred HhcCCCCHHHHHHHHHHHhH---------HhcCcHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHc-----CCHHHHH
Q 008705 432 VFLQPNDSRLWIAMAQCYET---------EQLHMLEEAIKCYRRAANCNDS--EAIALNQLAKLHHAL-----GRDEEAA 495 (557)
Q Consensus 432 ~~~~p~~~~~~~~l~~~~~~---------~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~ 495 (557)
-+.+|+++..++..|.+... +..+...+|...++++++++|+ +..++..+|.+|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 34578888877777666543 0123467899999999999999 677999999999995 9999999
Q ss_pred HHHHHHHHHHHhhhcCCcch-HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCC
Q 008705 496 FYYKKDLERMEAEEREGPNM-VEALIFLATHCRA-HGRFEEAEVYCTRLLDYTGP 548 (557)
Q Consensus 496 ~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 548 (557)
.+|+++++ ..|+. ..+++.+|..+.. .|++++|..++++++..+|.
T Consensus 225 ~~ferAL~-------LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 225 TAFEHLTR-------YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHH-------HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHH-------hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999 68875 9999999999988 49999999999999998765
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.88 E-value=4.5e-09 Score=80.65 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhccCCCCHH-HHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHH
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVNSYPWNWN-AWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTK 257 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~ 257 (557)
.+..|..+...|++++|+..|+++++.+|.+.. +|..+ |.++...|++++|+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l-------------------------g~~~~~~~~~~~A~~~ 57 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLM-------------------------GNAYRKLGDWQKALNN 57 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHH-------------------------HHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH-------------------------HHHHHHcCCHHHHHHH
Confidence 356788888888888999999888888888877 77655 8888888888888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 008705 258 YEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRV 303 (557)
Q Consensus 258 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 303 (557)
|+++++.+|++..++.. +.+.+++..|++++..+|.+.
T Consensus 58 ~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 58 YQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 88888888888776643 677788888888877777654
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.68 E-value=1.5e-07 Score=70.66 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHhhhCc---hHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCC
Q 008705 334 KYRPESCCIIGNYYSLKGQ---HEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPR 403 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 403 (557)
|.+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4444555555555443333 455555555555555555555555555555555555555555555555544
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=1.9e-07 Score=70.06 Aligned_cols=71 Identities=7% Similarity=-0.065 Sum_probs=46.6
Q ss_pred CcCCHHHHHHHhHHHHhcCC---chHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Q 008705 367 DKNYLSAWTLMGHEYVEMKN---TPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN 437 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 437 (557)
+|+++..+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666654444 566666666666666666666666666666666666666666666666665
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=4e-07 Score=73.78 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcC---CchHHHHHHHHHHhhC-C-CChHHHHHHHHHHHHhCChHHHHH
Q 008705 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMK---NTPAAIDAYRRAVDIN-P-RDYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
....+.+.|.+.+..++.+.++.+.+|.++...+ +.++++..++..++.+ | ++.+.+|.+|..+.++|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445556666666666666777777777777766 4557777777777766 5 446667777777777777777777
Q ss_pred HHHHHHhcCCCCHHHHHHH
Q 008705 427 YFRKSVFLQPNDSRLWIAM 445 (557)
Q Consensus 427 ~~~~a~~~~p~~~~~~~~l 445 (557)
++++++++.|++..+....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHH
Confidence 7777777777766554443
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.56 E-value=5.6e-06 Score=83.41 Aligned_cols=166 Identities=9% Similarity=0.003 Sum_probs=130.4
Q ss_pred Chh-HHHHHHHHHhhhCchHHHHHHHHHHHhcC-cCCHHHHHHHhHHHHhcCC---------chHHHHHHHHHHhhC-CC
Q 008705 336 RPE-SCCIIGNYYSLKGQHEKSVVYFRRALKLD-KNYLSAWTLMGHEYVEMKN---------TPAAIDAYRRAVDIN-PR 403 (557)
Q Consensus 336 ~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~al~~~-p~ 403 (557)
.|+ .+..+-..+.+.|+.++|+..|+++.+.. +-+..+|..+-..+...+. .+.|.+.|++..... +.
T Consensus 24 spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 24 SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 344 35556678889999999999999988764 2346677777777765554 577888998887643 22
Q ss_pred ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHHHH
Q 008705 404 DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQL 481 (557)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 481 (557)
+..+|..+...|.+.|++++|..+|+++.+.. ..+...|..+-..|.+ .|+.++|.++|++..+.. ..+...+..+
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~--~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR--KGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 67788889999999999999999999887653 3367788888889998 999999999999887753 2346678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 008705 482 AKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 482 a~~~~~~g~~~~A~~~~~~al~ 503 (557)
...+.+.|+.++|.+++++..+
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHH
Confidence 9999999999999999998776
No 215
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.56 E-value=4.9e-08 Score=79.41 Aligned_cols=126 Identities=11% Similarity=0.073 Sum_probs=83.5
Q ss_pred HHHHHHHHHhHhchhHHHHHHHHHHcCCCCCCCCCCCCCccccCCCccccccccCCCCCCCCCCCCcCCCCCCccccccc
Q 008705 10 ELRSAIRQLSNRCLYSAAKWAAEQLVGIEQDPAKYTPTNTRFQRGSSSIRRRFRTNDITSTPVAGVSYVSTPVMEEDEVE 89 (557)
Q Consensus 10 ~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (557)
-|++.++++.+.|||++++.++++|+++...++...+. ...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp---------------------------------------~~~ 62 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP---------------------------------------PQK 62 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH---------------------------------------HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH---------------------------------------HHH
Confidence 47899999999999999999999999997543221000 012
Q ss_pred hhhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHH-HhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhh
Q 008705 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALY-LAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTS 168 (557)
Q Consensus 90 ~~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (557)
....+++|.++|..|+|.+|...|++++.......+.-+.. ..+. + +... .
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~--------~--ss~p-----------------~- 114 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN--------S--ASTP-----------------Q- 114 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------------------------------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc--------c--CCCc-----------------c-
Confidence 35677889999999999999999998754221111110000 0000 0 0000 0
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008705 169 WKNGTVDPFGLYLYGIVLKDKGNENLARTVFVES 202 (557)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 202 (557)
....+.+.++.|.++.|+.+.|++++|+..++.+
T Consensus 115 s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 115 SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0012456789999999999999999999998875
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.54 E-value=6.3e-07 Score=88.28 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=92.6
Q ss_pred HHHHhCChHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCCh---HHH
Q 008705 414 AYEMMHMPLYALHYFRKSVFL-----QPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSE---AIA 477 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~ 477 (557)
-+..+|++++|+..+++++++ .|++ ..++.++|.+|.. +|++++|+.++++++.+ .|++ ...
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~--~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN--LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 355688999999999999875 3455 4578899999999 99999999999999875 3444 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-hcCCcchHHHHHHHHHHHHHc
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAE-EREGPNMVEALIFLATHCRAH 529 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~~~~ 529 (557)
+++||.+|..+|++++|+.+|+++++..... +...|....++.+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976654 445677777778888877654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.53 E-value=3.2e-07 Score=90.14 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=81.1
Q ss_pred cCcHHHHHHHHHHHHhc-----CCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hhcCCcchHHHHHHHHH
Q 008705 454 LHMLEEAIKCYRRAANC-----NDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA-EEREGPNMVEALIFLAT 524 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~la~ 524 (557)
.|+|++|+..+++++.+ .|++ ..++.++|.+|..+|++++|+.+++++++...+ .+...|+....+.+||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 78999999999999875 4555 457899999999999999999999999996554 34567888999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcc
Q 008705 525 HCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 525 ~~~~~g~~~~A~~~~~~al~~ 545 (557)
+|..+|++++|..+|++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.52 E-value=8.4e-07 Score=68.40 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC-------cCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHH
Q 008705 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLD-------KNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAW 408 (557)
Q Consensus 336 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 408 (557)
++.-|+.+|..++..|+|..|+..|++|++.. +....++..+|.++.++|+++.|+..+++++.+.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45667778888888888888888888877653 22345566666666666666666666666666666666665
Q ss_pred HHHH
Q 008705 409 YGLG 412 (557)
Q Consensus 409 ~~l~ 412 (557)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.52 E-value=3.1e-05 Score=77.95 Aligned_cols=162 Identities=9% Similarity=-0.046 Sum_probs=132.3
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhhC-CCChhHHHHHHHHHhhhC---------chHHHHHHHHHHHhcC-cCCHHHHH
Q 008705 307 DMYSNVLYAKECFSALSYLAHRVFMTD-KYRPESCCIIGNYYSLKG---------QHEKSVVYFRRALKLD-KNYLSAWT 375 (557)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~ 375 (557)
......+...|+.+++..++..+.... +.+..+|..+-..+...+ ..++|...|++..... +-+..+|.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 334455567899999999999887653 346677777777776544 4688999999987754 23577899
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhHHh
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDIN-PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQ 453 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 453 (557)
.+...|.+.|++++|..+|++..+.. ..+..+|..+...|.+.|+.++|..+|+++.+.. ..+...|..+..++.+
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~-- 187 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD-- 187 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh--
Confidence 99999999999999999999988753 2378889999999999999999999999998754 3357889999999999
Q ss_pred cCcHHHHHHHHHHHHhc
Q 008705 454 LHMLEEAIKCYRRAANC 470 (557)
Q Consensus 454 ~~~~~~A~~~~~~al~~ 470 (557)
.|+.++|.+++++..+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.6e-06 Score=70.20 Aligned_cols=79 Identities=14% Similarity=-0.000 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC---cHHHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCHHHHHHH
Q 008705 423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---MLEEAIKCYRRAANCN-D-SEAIALNQLAKLHHALGRDEEAAFY 497 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~ 497 (557)
.+...|.+.+..++.+..+.+.+|+++.+ .+ +.++++..++..++.+ | ...++++++|..+.+.|+|++|..+
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~--S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVR--SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444445455555555555555555 44 3445555555555554 4 3345555555555555555555555
Q ss_pred HHHHHH
Q 008705 498 YKKDLE 503 (557)
Q Consensus 498 ~~~al~ 503 (557)
++++++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555555
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=8.6e-07 Score=68.35 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
+.-.+.+|..++..|++..|+.+|+++++.........+..+.++..+|.++.++|++++|+.+++++++++|.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 4567899999999999999999999999965443323457889999999999999999999999999999987664
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.46 E-value=6.4e-07 Score=88.04 Aligned_cols=102 Identities=16% Similarity=0.078 Sum_probs=77.9
Q ss_pred HhCChHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCCh---HHHHHH
Q 008705 417 MMHMPLYALHYFRKSVFL-----QPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSE---AIALNQ 480 (557)
Q Consensus 417 ~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~ 480 (557)
..|++++|+..|++++++ .|+++ .++.++|.+|.. +|+|++|+.++++++.+ .|++ ...+++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~--~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY--MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 457888999999888874 45554 467889999999 99999999999999875 3444 457899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhh-hcCCcchHHHHH
Q 008705 481 LAKLHHALGRDEEAAFYYKKDLERMEAE-EREGPNMVEALI 520 (557)
Q Consensus 481 la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~ 520 (557)
||.+|..+|++++|+.+|+++++..... +...|...++..
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 9999999999999999999999966543 233344444433
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=3.4e-06 Score=83.06 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=83.0
Q ss_pred HhHHhcCcHHHHHHHHHHHHhc-----CCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hhcCCcchHHHH
Q 008705 449 YETEQLHMLEEAIKCYRRAANC-----NDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEA-EEREGPNMVEAL 519 (557)
Q Consensus 449 ~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 519 (557)
+.. .|++++|+..+++++.+ .|++ ..++.++|.+|..+|++++|+.++++++..... .+...|.....+
T Consensus 297 ~~~--~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 297 LKA--HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHH--TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHh--hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 445 89999999999999975 3444 458899999999999999999999999986554 346678889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 520 IFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 520 ~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
++||.+|..+|++++|..+|++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.07 E-value=4e-05 Score=60.86 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=85.7
Q ss_pred cCCCCHHHHHHHHHHHhHHhcCcH------HHHHHHHHHHHhcCCCh--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705 434 LQPNDSRLWIAMAQCYETEQLHML------EEAIKCYRRAANCNDSE--------AIALNQLAKLHHALGRDEEAAFYYK 499 (557)
Q Consensus 434 ~~p~~~~~~~~l~~~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~ 499 (557)
+.|++++.|......... .|+. ++-+..|++|+..-|.. ...|...|.. ...++.++|...|+
T Consensus 8 ~~p~~yd~W~~yl~llE~--~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEK--NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp --CCSHHHHHHHHHHHHH--HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH--cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 468888888888888887 7887 77788888888766542 3356666644 56689999999999
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 008705 500 KDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVSF 551 (557)
Q Consensus 500 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 551 (557)
.+++. ....+.+|...|....++|+...|.+.+.+++...|.+.+
T Consensus 85 ~a~~~-------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 85 MARAN-------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHH-------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHH-------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 99983 3445999999999999999999999999999999876653
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.01 E-value=0.00014 Score=57.79 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=51.3
Q ss_pred CcCCHHHHHHHhHHHHhcCCc------hHHHHHHHHHHhhCCCC--------hHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 008705 367 DKNYLSAWTLMGHEYVEMKNT------PAAIDAYRRAVDINPRD--------YRAWYGLGQAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 432 (557)
.|++++.|..........|+. +.-++.|++|+..-|.. ...|...+.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344444444444444444444 44444444444433321 2233333322 33355555555555555
Q ss_pred hcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh
Q 008705 433 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 474 (557)
Q Consensus 433 ~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 474 (557)
.+....+.+|...|..-.+ +|+...|.+.+.+++.+.|..
T Consensus 88 ~~hKkFAKiwi~~AqFEiR--qgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELS--QGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHHHHHHHHHHHHHHH--cccHHHHHHHHHHHhccCCCc
Confidence 5544455555555555555 555555555555555555543
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.93 E-value=8e-05 Score=57.98 Aligned_cols=90 Identities=12% Similarity=-0.023 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchH---HHHHHHHHHhhC-C-CChHHHHHHHHHHHHhCChHHHHHHH
Q 008705 354 EKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPA---AIDAYRRAVDIN-P-RDYRAWYGLGQAYEMMHMPLYALHYF 428 (557)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~l~~~~~~~~~~~~A~~~~ 428 (557)
..+...|.+.+..++....+.+.+|+++....+... ++.+++..+..+ | ..-+.++.||..+.++|+|.+|..++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444555555455555555666666555554444 555555555544 2 23445555666666666666666666
Q ss_pred HHHHhcCCCCHHHHH
Q 008705 429 RKSVFLQPNDSRLWI 443 (557)
Q Consensus 429 ~~a~~~~p~~~~~~~ 443 (557)
+..++..|++..+..
T Consensus 98 ~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 98 RGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHCTTCHHHHH
T ss_pred HHHHHhCCCCHHHHH
Confidence 666666665554443
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.85 E-value=0.00025 Score=55.15 Aligned_cols=91 Identities=15% Similarity=0.036 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH---HHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCHHHHHH
Q 008705 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE---AIKCYRRAANCN-D-SEAIALNQLAKLHHALGRDEEAAF 496 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~ 496 (557)
..+...|.+....++.+..+.+.+|+++.+ ..+..+ ++.+++..+..+ | ..-+.++.+|..+.+.|+|++|..
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~--S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR--TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTT--SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344455555555555566666666666665 554444 666666666554 3 344566666666666666666666
Q ss_pred HHHHHHHHHHhhhcCCcchHHHHHH
Q 008705 497 YYKKDLERMEAEEREGPNMVEALIF 521 (557)
Q Consensus 497 ~~~~al~~~~~~~~~~~~~~~~~~~ 521 (557)
+++.+++ ..|++..+...
T Consensus 96 ~~~~lL~-------~eP~n~QA~~L 113 (126)
T 1nzn_A 96 YVRGLLQ-------TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHH-------HCTTCHHHHHH
T ss_pred HHHHHHH-------hCCCCHHHHHH
Confidence 6666666 45655555443
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.74 E-value=0.034 Score=56.92 Aligned_cols=124 Identities=15% Similarity=0.002 Sum_probs=73.2
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 486 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 486 (557)
++.......+.+.|...+.+.....+-+.. .+..++.-... .+...++...+.+......++...- ..+....
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e-~~~r~Al 296 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMAL 296 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH--cCCChHHHHHHHhccccCCChHHHH-HHHHHHH
Confidence 344444455777788777766543333322 22233333333 3435566666666655444433333 3333445
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 487 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 487 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
+.|+++.|..+|+..-. .........+++|+.+...|+.++|..+|+++..
T Consensus 297 r~~d~~~a~~~~~~l~~-------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPM-------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCT-------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHccc-------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 66888888887766443 2234577788888888888888888888888765
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.59 E-value=0.00067 Score=55.26 Aligned_cols=97 Identities=11% Similarity=-0.045 Sum_probs=64.5
Q ss_pred HHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-----
Q 008705 444 AMAQCYETEQLHMLEEAIKCYRRAANCNDSE---------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE----- 509 (557)
Q Consensus 444 ~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----- 509 (557)
.-...+.. .|.|+.|+-....++.+..++ ..++..+|.+++..|+|..|...|++++.......
T Consensus 25 dqik~L~d--~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 25 DHVRDMAA--AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHH--hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33444445 677777777666655543222 23667777777777777777777777766433100
Q ss_pred -------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 510 -------------REGPNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 510 -------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
...+.+.++.+.+|.||.+.|++++|+..++.+
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 012345689999999999999999999998764
No 230
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.49 E-value=0.027 Score=45.52 Aligned_cols=201 Identities=15% Similarity=0.099 Sum_probs=111.2
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHH-hh-CCCCCchhhchhHHHHHHHHhhh
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIE-LE-GPLGKSNAVNRELISLERELSTS 168 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~l~~~ 168 (557)
+-..+++-++|-.|+|.||+.+|-+.....+.+....+.+...+.++....++ +. +-+++...+.-+ +..+
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~-------~~~f 106 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR-------IQEM 106 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH-------HHTT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc-------ccee
Confidence 45788899999999999999999988777777666655544444333222222 11 122222222211 2222
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHH--hhhcHHHHhhcC-CChhHHHHHHHHHH
Q 008705 169 WKNGTVD-PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKS--LCTSIDILNSLN-LNNHWMKDYFLASA 244 (557)
Q Consensus 169 ~~~~~~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~--~~~~~~~~~~l~-~~~~~~~~~~la~~ 244 (557)
.- +|.| ...+.++|.++.+.|+.+||+..|..+...+|-....-..+-. .....+.-+-.. ........+.....
T Consensus 107 fv-d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~ 185 (242)
T 3kae_A 107 FV-DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSI 185 (242)
T ss_dssp SC-CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHH
T ss_pred ee-ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHH
Confidence 22 3555 4567788999999999999999999999999875543211100 000000000000 00111111111111
Q ss_pred HHHHhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 008705 245 YQELRMHKESLTKYEYLQGTFSFS-NYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYR 302 (557)
Q Consensus 245 ~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 302 (557)
-...--.+ ...++-...-|.- .......|..++..|-.++...+|..+.+.+|..
T Consensus 186 ~lHe~~s~---~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 186 EFHESLSP---SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHCCH---HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHHhccH---HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 01100011 2233333344553 3344567788999999999999999999999853
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.16 E-value=0.0068 Score=47.26 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=72.1
Q ss_pred hhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHhccCCCC-HHHHHHHHHhhhcHHHHhhcCC
Q 008705 156 RELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNE---NLARTVFVESVNSYPWN-WNAWSELKSLCTSIDILNSLNL 231 (557)
Q Consensus 156 ~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~~~~~~l~~ 231 (557)
.++..+.+....-. .+...+.+.|.+|.++.+..+. .+++.+++..++.+|.. -+++
T Consensus 21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~L------------------ 81 (134)
T 3o48_A 21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECL------------------ 81 (134)
T ss_dssp HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH------------------
T ss_pred HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHH------------------
Confidence 45666666665533 4556788999999999888765 46888999888877743 3333
Q ss_pred ChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008705 232 NNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKA 278 (557)
Q Consensus 232 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 278 (557)
|++|..+.+.|+|++|.++.+.+++..|++..+......+
T Consensus 82 -------YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 82 -------YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp -------HHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 5568899999999999999999999999988766554433
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.00 E-value=0.0089 Score=46.60 Aligned_cols=75 Identities=7% Similarity=-0.030 Sum_probs=44.1
Q ss_pred CHHHHHHHhHHHHhcCCc---hHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHH
Q 008705 370 YLSAWTLMGHEYVEMKNT---PAAIDAYRRAVDINPR-DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIA 444 (557)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 444 (557)
.+.+.+.+|+++....+. ..++..++..+..+|. .-+.++.||..+.++|+|++|..+.+.+++..|++..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 345555666666655543 3466666666665552 35556666666666666666666666666666666554433
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.92 E-value=0.026 Score=44.58 Aligned_cols=75 Identities=7% Similarity=-0.026 Sum_probs=44.8
Q ss_pred CCHHHHHHHhHHHHhcCCc---hHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHH
Q 008705 369 NYLSAWTLMGHEYVEMKNT---PAAIDAYRRAVDINPR-DYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWI 443 (557)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 443 (557)
-...+.+.+|+++....+. .+++..++..+...|. .-+.++.||..+.++|+|.+|..+.+..++..|++..+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3455566666666665543 3466666666665553 3445566666666666666666666666666666655443
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.85 E-value=0.025 Score=54.07 Aligned_cols=99 Identities=14% Similarity=0.003 Sum_probs=75.0
Q ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcc-h
Q 008705 443 IAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-M 515 (557)
Q Consensus 443 ~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~ 515 (557)
..+|..|.. .|+|.+|.+.+.+.... +.. -.+++..-..+|...|++.++...+.++...... ...+|. .
T Consensus 103 ~kL~~l~~~--~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i~ 179 (394)
T 3txn_A 103 ARLIALYFD--TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHHH
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHHH
Confidence 378899999 99999998888887763 111 1457778888999999999999999999874322 212332 3
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Q 008705 516 VEALIFLATHCR-AHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 516 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 544 (557)
+.....-|.++. ..++|.+|..+|-.++.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 455666788889 89999999999988863
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.82 E-value=0.046 Score=43.22 Aligned_cols=76 Identities=13% Similarity=-0.035 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHhHHhcCcH---HHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCC
Q 008705 437 NDSRLWIAMAQCYETEQLHML---EEAIKCYRRAANCND-SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 512 (557)
Q Consensus 437 ~~~~~~~~l~~~~~~~~~~~~---~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 512 (557)
..+.+.+++|+++.+ ..+. .+++.+++..+...| ..-+.++.+|..+.++|+|++|..+.+.+++ ..
T Consensus 37 vs~~t~F~YAw~Lv~--S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~-------~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIK--STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE-------HE 107 (144)
T ss_dssp SCHHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------TC
T ss_pred CcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cC
Confidence 345566666666665 4432 356666666666555 3345666666666666666666666666666 56
Q ss_pred cchHHHHHH
Q 008705 513 PNMVEALIF 521 (557)
Q Consensus 513 ~~~~~~~~~ 521 (557)
|++..+...
T Consensus 108 P~n~QA~~L 116 (144)
T 1y8m_A 108 RNNKQVGAL 116 (144)
T ss_dssp CCCHHHHHH
T ss_pred CCcHHHHHH
Confidence 666555443
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.62 E-value=0.76 Score=46.96 Aligned_cols=184 Identities=5% Similarity=-0.158 Sum_probs=103.1
Q ss_pred HhhhCchHHHHHHHHHHHhcCcCCHH-H---HHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChH
Q 008705 347 YSLKGQHEKSVVYFRRALKLDKNYLS-A---WTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPL 422 (557)
Q Consensus 347 ~~~~g~~~~A~~~~~~al~~~p~~~~-~---~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 422 (557)
.....+.+.|...+.+.....+-+.. . +..++.-....+...++...+.+......++.. .-.++......|++.
T Consensus 224 rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRR 302 (618)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHH
T ss_pred HHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHH
Confidence 33445666777766655432222211 1 122222222333344555666655443332222 222222334557777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-----------------------CCh-----
Q 008705 423 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----------------------DSE----- 474 (557)
Q Consensus 423 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~----- 474 (557)
.|..+|.++-......+...+.+|..+.. .|+.++|...|+++.... +..
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~--~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~ 380 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLE--RGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT 380 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHH--cCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence 77777766544333456666777777777 777777777777665421 000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRL 542 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 542 (557)
.......+..+...|....|...+...+. .. ++.-...++.+....|.+..++....+.
T Consensus 381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~-------~~--~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 381 QGPEMARVRELMYWNLDNTARSEWANLVK-------SK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HSHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHCCChhhHHHHHHHHHh-------cC--CHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 01234566778889999999888887765 21 2344557788888899998887666543
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.58 E-value=0.14 Score=49.03 Aligned_cols=163 Identities=7% Similarity=-0.080 Sum_probs=78.8
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHH-----HHHHHHHhh-hCchHHHHHHHHHHHhcCcCCH----H--
Q 008705 305 DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESC-----CIIGNYYSL-KGQHEKSVVYFRRALKLDKNYL----S-- 372 (557)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~----~-- 372 (557)
+...++.++...++.+++..+.......-+.-+.+. ..+-..+.. .+..+.-+..+..+++...+.- .
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666555433332222221 122222222 2223333344444443222111 1
Q ss_pred HHHHHhHHHHhcCCchHHHHHHHHHHhhCCC--C----hHHHHHHHHHHHHhCChHHHHHHHHHHHhcC---CCCHH---
Q 008705 373 AWTLMGHEYVEMKNTPAAIDAYRRAVDINPR--D----YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ---PNDSR--- 440 (557)
Q Consensus 373 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~--- 440 (557)
.-..+|..|+..|+|.+|.+.+.+..+.-.. + .+++..-.++|..++++.++...+.++.... +.+|.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 1225666666666666666666665552111 1 3344455556666666666666666664432 12222
Q ss_pred -HHHHHHHHHh-HHhcCcHHHHHHHHHHHHh
Q 008705 441 -LWIAMAQCYE-TEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 441 -~~~~l~~~~~-~~~~~~~~~A~~~~~~al~ 469 (557)
....-|..+. . .++|.+|...|-.++.
T Consensus 181 ~i~~~~Gi~~l~~--~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 181 ALDLQSGILHAAD--ERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHT--TSCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHh--ccCHHHHHHHHHHHHh
Confidence 2334455555 5 6666666666666653
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.053 Score=56.46 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=34.8
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHH
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKS 431 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 431 (557)
.-+..+...|+++-|+++-++++...|.+...|+.|+.+|..+|+|+.|+-.++-+
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33444555666666666666666666666666666666666666666666555544
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.36 E-value=0.74 Score=49.00 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=31.1
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhc
Q 008705 92 DFYLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGE 134 (557)
Q Consensus 92 ~~~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~ 134 (557)
+.+...+|.+..++.+.+..+|.++.+.....+.+...|..++
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~ 274 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVS 274 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 5666789999999999999999997654444445545555553
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.29 E-value=0.34 Score=39.24 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=75.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhH
Q 008705 173 TVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHK 252 (557)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~ 252 (557)
|..++.-.+++.+++-.|.|..|+-.+.+. +...+.++.+.||....+|.
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l------------------------------NT~Ts~YYk~LCy~klKdYk 79 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKL------------------------------NTCTSKYYESLCYKKKKDYK 79 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHTC------------------------------CBHHHHHHHHHHHHHTTCHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHhc------------------------------chHHHHHHHHHHHHHHHHHH
Confidence 555678888999999999999887766432 11233466788999999999
Q ss_pred HHHHHHHHHHh--c--C-------------CCCH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 008705 253 ESLTKYEYLQG--T--F-------------SFSN-YIQAQIAKAQYSLREFEQVEVIFEELLRNDPY 301 (557)
Q Consensus 253 ~A~~~~~~~l~--~--~-------------p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 301 (557)
.|+..++++++ . + |.+. ..+..+|.++.+.|+.++|+.+|......+|-
T Consensus 80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 99999999983 2 2 2333 35678899999999999999999999998874
No 241
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.15 Score=54.62 Aligned_cols=160 Identities=16% Similarity=0.055 Sum_probs=82.2
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Q 008705 341 CIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHM 420 (557)
Q Consensus 341 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 420 (557)
..+..++...|.++.|+...+ ++... .......|++++|.+..+. .++...|..+|..+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 445555566666666654432 11111 2344567777777776432 3467778888888888888
Q ss_pred hHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH
Q 008705 421 PLYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 492 (557)
Q Consensus 421 ~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 492 (557)
++.|+.+|.++-.. ...+...+..++..... .|++..|..+|.+.- + ......+|...++++
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~--~~~~~~A~~~~~~~g-----~---~~~a~~~~~~~~~~~ 766 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET--TGKFNLAFNAYWIAG-----D---IQGAKDLLIKSQRFS 766 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHT-----C---HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH--cCchHHHHHHHHHcC-----C---HHHHHHHHHHcCChH
Confidence 88888888775221 12333334444444444 444444444433320 0 112223344444444
Q ss_pred HHHHHHHHHHHHHHhhhcCCcc--hHHHHHHHHHHHHHcCCHHHH
Q 008705 493 EAAFYYKKDLERMEAEEREGPN--MVEALIFLATHCRAHGRFEEA 535 (557)
Q Consensus 493 ~A~~~~~~al~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 535 (557)
+|...-++. ..+. .+.+....+..+...|+.+.|
T Consensus 767 ~A~~lA~~~---------~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 767 EAAFLGSTY---------GLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHT---------TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHh---------CCChHHHHHHHHHHHHHHHhccchhHH
Confidence 444433220 1233 345556666666677765433
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.18 Score=41.80 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=72.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHH
Q 008705 244 AYQELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALS 323 (557)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 323 (557)
...+.|+++.|.+..+.+ ++...|..+|......|+++-|+.+|.++- .+..+.-++...|+.+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHHHH
Confidence 456889999999998876 678899999999999999999999999872 3445555666677777766
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHH
Q 008705 324 YLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362 (557)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 362 (557)
.+.+.+...... .....++...|+++++++.|.+
T Consensus 81 kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 665554433321 2233445556777777766654
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.11 E-value=0.11 Score=55.66 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=60.1
Q ss_pred HhcccHHHHHH-HHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHH
Q 008705 280 YSLREFEQVEV-IFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVV 358 (557)
Q Consensus 280 ~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 358 (557)
...+++++|.. ++. .-|+ ..........+...+..+.+..+.+ ++... .......|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHH
Confidence 45677777754 321 1120 1222444555555666666554431 22222 334566788888887
Q ss_pred HHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705 359 YFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397 (557)
Q Consensus 359 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 397 (557)
..+ ..++...|..+|..+.+.++++.|+++|.++
T Consensus 674 ~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 674 LLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 754 2356788999999999999999999999876
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.075 Score=55.35 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=82.9
Q ss_pred hhCc-hHHHHHHHHHHHhcCcCCHHHHHHHhHHHH--hcC-CchHHHHHHHHHHhh--------CCCC----------hH
Q 008705 349 LKGQ-HEKSVVYFRRALKLDKNYLSAWTLMGHEYV--EMK-NTPAAIDAYRRAVDI--------NPRD----------YR 406 (557)
Q Consensus 349 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~-~~~~A~~~~~~al~~--------~p~~----------~~ 406 (557)
..++ ++.|+.++++....+|.... .+..+.+.. ..+ +--+|+..+.++++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3445 57799999998888886533 222222222 122 233566666666531 2222 22
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHH
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 467 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~a 467 (557)
.+..-+..+...|+++-|+.+.++++...|.+...|..|+.+|.. +|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~--l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK--KEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH--TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH--hccHHHHHHHHhcC
Confidence 444556677789999999999999999999999999999999999 99999999887765
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=1.6 Score=42.83 Aligned_cols=190 Identities=8% Similarity=-0.071 Sum_probs=113.6
Q ss_pred CchHHHHHHHHHHHhc------CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHH---HH-HhCC
Q 008705 351 GQHEKSVVYFRRALKL------DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQA---YE-MMHM 420 (557)
Q Consensus 351 g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~---~~-~~~~ 420 (557)
|+++.|++.+...-+. .+....+...+..++...|+++...+.+.-..........+-..+... +. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5666666655333221 122345566667777777777776665544433322222222111111 11 1122
Q ss_pred hHHHHHHHHHHHhc----CCC-------CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc----CCC--hHHHHHHHHH
Q 008705 421 PLYALHYFRKSVFL----QPN-------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALNQLAK 483 (557)
Q Consensus 421 ~~~A~~~~~~a~~~----~p~-------~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~la~ 483 (557)
.+... ....+.. ... ..+....++.++.. .|++.+|...+.....- .+. -.+++.....
T Consensus 110 ~d~~~--~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~--~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 110 LDLNT--RISVIETIRVVTENKIFVEVERARVTKDLVEIKKE--EGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp THHHH--HHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred hhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22111 1111211 111 24566789999999 99999999999887532 111 1457888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 008705 484 LHHALGRDEEAAFYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHGRFEEAEVYCTRLLDY 545 (557)
Q Consensus 484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 545 (557)
++...+++.+|...++++........ ..| -....+...|.++...++|.+|..+|..++..
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999999765332211 112 23456677899999999999999999998764
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.67 E-value=0.2 Score=48.27 Aligned_cols=123 Identities=11% Similarity=-0.094 Sum_probs=86.4
Q ss_pred hHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHH-HHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCc
Q 008705 378 GHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYA-LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 456 (557)
Q Consensus 378 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A-~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 456 (557)
|......|+.+.|...+++++.+....+-.- .. ...+-.+ ...+++.. ..+...++..+.. .|+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~--~g~ 186 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIA--CGR 186 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHH--TTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHH--CCC
Confidence 3444456888888888888888764432110 00 0111111 11121111 2345567778888 999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcch
Q 008705 457 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 515 (557)
Q Consensus 457 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 515 (557)
+.+|+..+.+++..+|-+..++..+..++...|+..+|+..|+++.+.+..+-+..|..
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999999999999999999988777666666643
No 247
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.66 E-value=0.14 Score=54.73 Aligned_cols=98 Identities=5% Similarity=-0.038 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHHHHH
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFL----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALN 479 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 479 (557)
...+..+...|.+.|+.++|...|....+. ..-+...|+.+...|.+ .|+.++|.++|++..... ..+...|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck--~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR--QGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 456888999999999999999999876532 24468899999999999 999999999999998753 23567788
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHH
Q 008705 480 QLAKLHHALGRD-EEAAFYYKKDLER 504 (557)
Q Consensus 480 ~la~~~~~~g~~-~~A~~~~~~al~~ 504 (557)
.+-.++.+.|+. ++|..+|++..+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 888899999985 7888999998873
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.52 E-value=0.28 Score=43.55 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=78.7
Q ss_pred chhHHHHHHHHhhhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhh---cHHHH-h---
Q 008705 155 NRELISLERELSTSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCT---SIDIL-N--- 227 (557)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~---~~~~~-~--- 227 (557)
...+..+...+...++.+|.|+.....+...++-.|+++.|.+-++.+.+++|.....-..+..++. ....+ .
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~ 89 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 89 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4567778888888888999999999999999999999999999999999999987654433322221 11111 1
Q ss_pred ---hcCCChhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Q 008705 228 ---SLNLNNHWMKDYFLASAYQELRMHKESLTKYEYLQGTFS 266 (557)
Q Consensus 228 ---~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 266 (557)
-+..+..|......+......|+.++|...-.++++.-|
T Consensus 90 ~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 90 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 123455566666666666666666666666666655544
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.61 Score=38.66 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=20.0
Q ss_pred hhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRR 396 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 396 (557)
..|+++.|.+..+.. ++...|..+|...+..|+++-|.++|.+
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344555554444332 2344455555555555555555544444
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.23 E-value=2.2 Score=41.70 Aligned_cols=187 Identities=9% Similarity=-0.008 Sum_probs=111.4
Q ss_pred HhhhHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH----Hhcc
Q 008705 248 LRMHKESLTKYEYLQGT------FSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL----YAKE 317 (557)
Q Consensus 248 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~----~~~~ 317 (557)
.|++++|++.+..+.+. .+....+...+..++...|+++...+.+.-+.+.......+...+.+.. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 47788888777554432 2335777888889999999999887777655443332222221111111 1111
Q ss_pred chh--HHHHHHHHHHhhCCC-------ChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCc------CCHHHHHHHhHHHH
Q 008705 318 CFS--ALSYLAHRVFMTDKY-------RPESCCIIGNYYSLKGQHEKSVVYFRRALKLDK------NYLSAWTLMGHEYV 382 (557)
Q Consensus 318 ~~~--~~~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~ 382 (557)
..+ .-..+.......... +......++.+|...|++.+|...+.....-.- .-.+.+.....++.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 111 111111111111111 334456788888888999999888887653211 11356677788888
Q ss_pred hcCCchHHHHHHHHHHh---hCCCC----hHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705 383 EMKNTPAAIDAYRRAVD---INPRD----YRAWYGLGQAYEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~---~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 434 (557)
..+++..|...++++.. ..+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88888888888887642 22223 234566788888888888888888887653
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.72 E-value=0.43 Score=51.03 Aligned_cols=100 Identities=7% Similarity=-0.081 Sum_probs=83.7
Q ss_pred CHHHHHHHhHHHHhcCCchHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC-CCCHHHHHH
Q 008705 370 YLSAWTLMGHEYVEMKNTPAAIDAYRRAVDI----NPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-PNDSRLWIA 444 (557)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 444 (557)
....+..+...|.+.|+.++|...|....+. ..-+..+|..+...|.+.|+.++|...|+++.+.. .-|...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3456888999999999999999999775432 23378899999999999999999999999998754 346788999
Q ss_pred HHHHHhHHhcCc-HHHHHHHHHHHHhcC
Q 008705 445 MAQCYETEQLHM-LEEAIKCYRRAANCN 471 (557)
Q Consensus 445 l~~~~~~~~~~~-~~~A~~~~~~al~~~ 471 (557)
+-.++.+ .|+ .++|.++|++.....
T Consensus 206 LI~glcK--~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGR--QDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHH--HTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcC
Confidence 9999999 898 578999999998764
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.70 E-value=0.42 Score=45.96 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=75.1
Q ss_pred HHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHH-HHHHHHHHhhCCCChHHHHHHHHHHHHhCCh
Q 008705 343 IGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAA-IDAYRRAVDINPRDYRAWYGLGQAYEMMHMP 421 (557)
Q Consensus 343 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A-~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 421 (557)
.|......|+.+.|...+.+|+.+.....-. ... ...+-.+ ...++.. ...+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCH
Confidence 3444445689999999999999886432110 000 0111111 1111111 123445577788888999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 422 LYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 422 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
.+|+..+..++..+|-+-.++..+-.++.. .|+..+|+..|+++-.
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~--~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYL--SDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Confidence 999999999999999888888888888888 8999999988887644
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.70 E-value=0.2 Score=49.64 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEM 417 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 417 (557)
.+..+|++......+..|..+|.+|..+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4566888888888888999999999999999999999999999989998889999899888776678888888877654
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.58 E-value=0.75 Score=40.85 Aligned_cols=115 Identities=12% Similarity=-0.041 Sum_probs=71.5
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHH
Q 008705 380 EYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 459 (557)
Q Consensus 380 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 459 (557)
..++.|+.++|+......++.+|.|......+.+.+...|+++.|...++.+.+++|.....-..+..+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~--------- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK--------- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH---------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH---------
Confidence 34567778888888888888888888888888888888888888888888888888776443222211111
Q ss_pred HHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 460 AIKCYRRAANC--------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 460 A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
|...=.+++.- .|........-+......|+.++|...-.++.+
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11111112211 122222333445555667888888888877776
No 255
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.52 E-value=0.19 Score=49.73 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=73.9
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYET 451 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 451 (557)
..+..+|.+......+..|..+|.+|..+.|++...++.||.+....|+.-+|+.+|-+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999887789999999888765
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.30 E-value=1.2 Score=49.56 Aligned_cols=145 Identities=10% Similarity=-0.039 Sum_probs=98.5
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhC--------------------
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDIN-------------------- 401 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------- 401 (557)
.+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-.--
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34555666677765544 234456667777889999999999999999998763210
Q ss_pred ---CCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCC
Q 008705 402 ---PRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP-NDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 473 (557)
Q Consensus 402 ---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~ 473 (557)
...+..|..+..++...+.++.++...+.|++..+ ++. ..|..+-..+.. .|+|++|...+...-.. ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~--l~~ye~Ay~aL~~~pd~-~~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA--AGKFDAAHVALMVLSTT-PL 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH--HCCSGGGGHHHHHHHHS-SS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh--hCCHHHHHHHHHhCCCH-HH
Confidence 11134566778888999999999999999998754 333 267777788888 99999998877654322 12
Q ss_pred hHHHHHHHHHHHHHcCCHHH
Q 008705 474 EAIALNQLAKLHHALGRDEE 493 (557)
Q Consensus 474 ~~~~~~~la~~~~~~g~~~~ 493 (557)
....+..+...+...|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 24455555555555555443
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.2 Score=49.00 Aligned_cols=97 Identities=14% Similarity=0.001 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC---CHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC--CChH----
Q 008705 405 YRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPN---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN--DSEA---- 475 (557)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~---- 475 (557)
..++..+|..|...|+++.|.+.|.++...... -..++.....++.. .+++..+...+.++.... ..++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~--~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF--YNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 446677888888888888888888877654322 24566677777777 788888888887775441 1122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
......|.++...++|.+|...|-.+..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2344456666777788888777776654
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.83 E-value=8.2 Score=41.20 Aligned_cols=185 Identities=12% Similarity=0.032 Sum_probs=99.3
Q ss_pred hhCchHHHHHHHHHHHhcC-cCC----HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCC---C---C----hHHHHHHHH
Q 008705 349 LKGQHEKSVVYFRRALKLD-KNY----LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINP---R---D----YRAWYGLGQ 413 (557)
Q Consensus 349 ~~g~~~~A~~~~~~al~~~-p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~---~----~~~~~~l~~ 413 (557)
..|+.++++..+.+-+... .++ ..+.+.+|.++...+ .+++..+...+..+. . + ..+-.+||.
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566667777766655421 111 233445555544444 467777777665432 0 1 134456666
Q ss_pred HHHHhCChHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCH
Q 008705 414 AYEMMHMPLYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 491 (557)
Q Consensus 414 ~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 491 (557)
++...++ +++...+...+..+.... .+-..+|.++.. .|+-+-...++..+.+...+...-...+|..+...|+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vG--Tgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLG--TGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc--cCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 6665554 456666766665332211 234566777776 77766555555555543333222223344444566777
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 492 EEAAFYYKKDLERMEAEEREGPN-MVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 492 ~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
+.+....+..... .+|. ...+-+.+|..|...|+...-...+..+..
T Consensus 541 e~~~~li~~L~~~------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 541 ELADDLITKMLAS------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp GGGHHHHHHHHHC------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 7666665554440 1111 122234467777888987666667777765
No 259
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.65 E-value=1.8e-05 Score=75.69 Aligned_cols=268 Identities=13% Similarity=0.088 Sum_probs=166.8
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhh
Q 008705 172 GTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMH 251 (557)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~ 251 (557)
.-+.|.+|..+|.++...|...+||+.|-++ .+|.+..-. ..+..+.|.+
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eV----------------------------i~~A~~~~~~ 99 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEV----------------------------VQAANTSGNW 99 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHH----------------------------HHHTTTSSCC
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHH----------------------------HHHHHhCCCH
Confidence 3567899999999999999999999999886 456554322 3444566778
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHHh
Q 008705 252 KESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVFM 331 (557)
Q Consensus 252 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (557)
++-+.+++.+.+. -..+.+-..+..+|.+.++..+-.+.+ ..| +.......|.-++..+.++.+..++..
T Consensus 100 edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl-----~~~-N~A~iq~VGDrcf~e~lYeAAKilys~--- 169 (624)
T 3lvg_A 100 EELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI-----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNN--- 169 (624)
T ss_dssp TTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT-----SCC-SSSCTHHHHHHHHHSCCSTTSSTTGGG---
T ss_pred HHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH-----cCC-CcccHHHHHHHHHHccCHHHHHHHHHh---
Confidence 8777777766543 334445556666777776654322221 123 233345556666666666655433322
Q ss_pred hCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 332 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
..-|..++.++...|++..|++.-++| +++.+|-.........+++.-|-.+--..+- .++. +-.+
T Consensus 170 -----isN~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~el 235 (624)
T 3lvg_A 170 -----VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEEL 235 (624)
T ss_dssp -----SCCCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGG
T ss_pred -----CccHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHH
Confidence 222334677777888888887766554 4556777777777788877777655544442 2322 2235
Q ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh-c-CCC------hHHHHHHHHH
Q 008705 412 GQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-C-NDS------EAIALNQLAK 483 (557)
Q Consensus 412 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~-~-~p~------~~~~~~~la~ 483 (557)
...|...|-|++-+..++.++.+..-...++..||.+|.+ -++++-.+.++.-.. + -|. ....|..+..
T Consensus 236 v~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK---Y~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK---FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS---SCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence 5667778888888888888887777777788888887765 344444444432111 0 121 1235666777
Q ss_pred HHHHcCCHHHHHH
Q 008705 484 LHHALGRDEEAAF 496 (557)
Q Consensus 484 ~~~~~g~~~~A~~ 496 (557)
+|..-.+++.|..
T Consensus 313 LY~~ydE~DnA~l 325 (624)
T 3lvg_A 313 LYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHhcchhHHHHHH
Confidence 7777777776653
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=2.4 Score=41.75 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCC-------HHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCCh-----
Q 008705 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNY-------LSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDY----- 405 (557)
Q Consensus 338 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----- 405 (557)
..+..+-+.|...+.++.|..+..++. .|.. ..-++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gf 309 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhH
Confidence 355567777888888999998888874 3321 23356788999999999999999999988777542
Q ss_pred --HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC
Q 008705 406 --RAWYGLGQAYEMMHMPLYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 471 (557)
Q Consensus 406 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~ 471 (557)
.++..+..+-..+|+..+- ..|. .+.. -..|..++.++..+....+..++.-++..+..+
T Consensus 310 r~~a~K~lI~V~LLlG~iP~r-~lf~-----q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~D 374 (523)
T 4b4t_S 310 LQQSNKLHCCIQLLMGDIPEL-SFFH-----QSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKD 374 (523)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHT-----TTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHhHHhhcCCCCCh-HHhh-----chhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccC
Confidence 1222333333445665431 1111 1222 123556666665422333444554444444443
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.51 Score=46.13 Aligned_cols=59 Identities=8% Similarity=0.115 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHhcCc---CCHHHHHHHhHHHHhcCCchHHHHHHHHH
Q 008705 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLDK---NYLSAWTLMGHEYVEMKNTPAAIDAYRRA 397 (557)
Q Consensus 339 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 397 (557)
++..+|.+|...|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555555555555555443221 12233444444444444444444444444
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.12 Score=50.71 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 008705 475 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTGPVS 550 (557)
Q Consensus 475 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 550 (557)
..++..+-+.|...+.+++|..+..++.- +.....+......++.+|.++.-+++|.+|.+++..|+...|++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 45677788888888888888888887642 111011223356677789999999999999999999988776653
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.59 E-value=3 Score=46.47 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=89.8
Q ss_pred HHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcC--------------------
Q 008705 376 LMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQ-------------------- 435 (557)
Q Consensus 376 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 435 (557)
.+...+...+.++-+.+ .+...|.++..-+.+|.++...|++++|..+|+++..--
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44555667788876654 344567777778999999999999999999999874211
Q ss_pred ---CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCCCh-H----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008705 436 ---PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-A----IALNQLAKLHHALGRDEEAAFYYKKD 501 (557)
Q Consensus 436 ---p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~~~~a 501 (557)
...+..|..+..++.. .+.++.++++.+.|++..+.+ . ..|.++-..+...|+|++|...+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~--~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFE--ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHH--TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 1123456677788888 999999999999999865432 2 26777888899999999998777543
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.22 E-value=15 Score=28.80 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=33.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 008705 484 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLDYTG 547 (557)
Q Consensus 484 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 547 (557)
.+..+|+-++-.+.+...+. ..+-.+..+..+|..|.+.|+..+|.+.+.+|.+..-
T Consensus 100 ~lv~~~KkDqLdki~~~~l~-------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILK-------NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC---------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHhHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34555666655555555433 3445566667777777777777777777776666543
No 265
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.73 E-value=0.018 Score=55.66 Aligned_cols=252 Identities=17% Similarity=0.145 Sum_probs=139.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhcCCchhhHHHHHHHHhhcccchHHHHHhhCCCC---CchhhchhHHHHHHHHhhhhc
Q 008705 94 YLLAKSYFDCREYRRAAHVLRDQTGRRSVFLRCYALYLAGEKRKEEEMIELEGPLG---KSNAVNRELISLERELSTSWK 170 (557)
Q Consensus 94 ~~la~~~~~~~~y~~A~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~l~~~~~ 170 (557)
..||+++.+.+...+|+..|-++.++....--. -.+...+++++.+..+.... +...+..++.-+...+.++..
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi---~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVV---QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHH---HHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSST
T ss_pred HHHHHHHHccCchHHHHHHHHhCCChHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHH
Confidence 347888888888888887776665543221000 01112223333332221111 111222222222222221111
Q ss_pred -----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHH
Q 008705 171 -----NGTVDPFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAY 245 (557)
Q Consensus 171 -----~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~ 245 (557)
.+|+.+ -.-..|.-++..|.|+.|.-+|..+-. + .. ++.++
T Consensus 135 lEefl~~~N~A-~iq~VGDrcf~e~lYeAAKilys~isN-----~---ak-------------------------LAstL 180 (624)
T 3lvg_A 135 LEEFINGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNVSN-----F---GR-------------------------LASTL 180 (624)
T ss_dssp TTSTTSCCSSS-CTHHHHHHHHHSCCSTTSSTTGGGSCC-----C---TT-------------------------TSSSS
T ss_pred HHHHHcCCCcc-cHHHHHHHHHHccCHHHHHHHHHhCcc-----H---HH-------------------------HHHHH
Confidence 123322 234567777777777777666654321 1 11 26667
Q ss_pred HHHhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHH
Q 008705 246 QELRMHKESLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYL 325 (557)
Q Consensus 246 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (557)
..+|+|..|++.-+++ +++..|-....++...+++.-|.-+--.++- .|+..+
T Consensus 181 V~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~--------------------- 233 (624)
T 3lvg_A 181 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELE--------------------- 233 (624)
T ss_dssp SSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCS---------------------
T ss_pred HHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHH---------------------
Confidence 7777777777766555 3445566677777777777766655555443 222211
Q ss_pred HHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh-hC-CC
Q 008705 326 AHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD-IN-PR 403 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~-p~ 403 (557)
.+...|...|-+++-+..++.++.+...+....+.+|.+|.+- ++++-.++++--.. ++ |+
T Consensus 234 ----------------elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipK 296 (624)
T 3lvg_A 234 ----------------ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 296 (624)
T ss_dssp ----------------GGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTT
T ss_pred ----------------HHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHH
Confidence 2556677788888888888888888888888888888877654 45666655543211 11 21
Q ss_pred ------ChHHHHHHHHHHHHhCChHHHHH
Q 008705 404 ------DYRAWYGLGQAYEMMHMPLYALH 426 (557)
Q Consensus 404 ------~~~~~~~l~~~~~~~~~~~~A~~ 426 (557)
....|..+.-+|..-.+|+.|..
T Consensus 297 viracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 297 VLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 24557788888888888887653
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.16 E-value=18 Score=33.07 Aligned_cols=114 Identities=10% Similarity=-0.051 Sum_probs=63.3
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-----CCChHHHHHHHHHHH
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEAIALNQLAKLH 485 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~ 485 (557)
+..=|.+.+++++|++.+..... .+.+ .|++..|.....-.++. .+-+......+..++
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~--------------~ll~--~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL--------------SFLK--AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--------------HHHH--TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--------------HHHH--CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34445667778888777655432 2223 33333333321111111 122233444444444
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008705 486 HALGRDE-EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCT 540 (557)
Q Consensus 486 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 540 (557)
......+ .=..+.+++++-..+.+...-.++..+..+|..+.+.|++.+|..+|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4332111 124566667764433333355789999999999999999999999885
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.95 E-value=35 Score=31.52 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHHHHHHHH
Q 008705 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRAWYGLGQ 413 (557)
Q Consensus 334 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 413 (557)
-.+|+.+..+|..|...+++.+|..+|- +. +.+.+..+..+-..+...+. |.....+...+.
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHH
Confidence 3588899999999999999999888873 21 11122333333222222222 233333333333
Q ss_pred -HHHHhCChHHHHHHHHHHHh----cC------------------CCCHHH-HHHHHHHHhHHhcCc---HHHHHHHHHH
Q 008705 414 -AYEMMHMPLYALHYFRKSVF----LQ------------------PNDSRL-WIAMAQCYETEQLHM---LEEAIKCYRR 466 (557)
Q Consensus 414 -~~~~~~~~~~A~~~~~~a~~----~~------------------p~~~~~-~~~l~~~~~~~~~~~---~~~A~~~~~~ 466 (557)
.|...++...|...+....+ .+ |..|.. +..+...-+. .+. +..-.+.|+.
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q--~~~~~lF~~L~~~Y~~ 272 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQ--KGSPDLFRQLKSKYEA 272 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHH--SCCHHHHHHHHHHTHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 46677888888776554432 12 223321 1122222233 443 3444555666
Q ss_pred HHhcCC-ChHHHHHHHHHHHHHc
Q 008705 467 AANCND-SEAIALNQLAKLHHAL 488 (557)
Q Consensus 467 al~~~p-~~~~~~~~la~~~~~~ 488 (557)
.++.+| .....+..+|.+|+..
T Consensus 273 ~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 273 NLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHhcHHHHHHHHHHHHHHHcCC
Confidence 666666 6667777888888755
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.62 E-value=42 Score=30.63 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHhhhCchHHHHHHHHHHHhcCcCCHHHHHHHhHHHHhc---CCchHHHHHHHHHHhhCCCChHHHHHH
Q 008705 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLDKNYLSAWTLMGHEYVEM---KNTPAAIDAYRRAVDINPRDYRAWYGL 411 (557)
Q Consensus 335 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l 411 (557)
.+|+.+..+|..|...|++.+|..+|-.. +.+++..+..+-.-+... |...+ ...+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHH
Confidence 47888999999999999999988887521 111233333332222222 32222 2222222
Q ss_pred H-HHHHHhCChHHHHHHHHHHH
Q 008705 412 G-QAYEMMHMPLYALHYFRKSV 432 (557)
Q Consensus 412 ~-~~~~~~~~~~~A~~~~~~a~ 432 (557)
+ ..|...|+...|...+....
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 2 24556788888877776554
No 269
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=75.24 E-value=43 Score=29.47 Aligned_cols=58 Identities=9% Similarity=-0.032 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYS-LREFEQVEVIFEELL 296 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~l 296 (557)
.++|.+..+.++|++.+....++.+.++. +.+-...+..+|-. .|....+...+..+.
T Consensus 35 v~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 35 VYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 45678888888888888888888876654 45555556555543 244455555554443
No 270
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.77 E-value=60 Score=35.21 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcC-CChHH----HHHHHHHHHHHc
Q 008705 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAI----ALNQLAKLHHAL 488 (557)
Q Consensus 441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----~~~~la~~~~~~ 488 (557)
.|..+..++.. .+-++-++.+.+.|+... ++++. .+..+-......
T Consensus 899 YY~hV~~LFE~--~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFE--ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 56677777777 888888888888888653 33332 455554444433
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=74.41 E-value=51 Score=35.72 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=64.3
Q ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc-C------------------
Q 008705 411 LGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-N------------------ 471 (557)
Q Consensus 411 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~-~------------------ 471 (557)
+...+...|.++-|. ..+...|.++..-+.+|.++.. .|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~--~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLK--SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHH--TTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 555666677776543 3456667777777888888888 88888888888876421 0
Q ss_pred ----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008705 472 ----DSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 504 (557)
Q Consensus 472 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 504 (557)
......|...+.++...+-++-++..-+.|++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 011236778899999999999999999999983
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.62 E-value=32 Score=35.23 Aligned_cols=341 Identities=9% Similarity=-0.036 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHhhhcCCc----hhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCC
Q 008705 100 YFDCREYRRAAHVLRDQTGRR----SVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVD 175 (557)
Q Consensus 100 ~~~~~~y~~A~~~l~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 175 (557)
.+++|.++.|+.+.++....- ..|..+...|..+..++.....+.
T Consensus 162 ~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~------------------------------- 210 (661)
T 2qx5_A 162 LLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYST------------------------------- 210 (661)
T ss_dssp HHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---------------------------------------------
T ss_pred HHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHH-------------------------------
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH--
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE-- 253 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~-- 253 (557)
.-.+.|...+. .+...||.-...|.-++.|......+..+...-.-..++-+..+-...+.-+.
T Consensus 211 -----------~l~~ey~~~~r---~~~~~DpyK~AvY~Iig~cD~~~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~ 276 (661)
T 2qx5_A 211 -----------KLHTEYNQHIK---SSLDGDPYRLAVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVY 276 (661)
T ss_dssp ------------------------------CHHHHHHHHHHHTCCGGGCCCGGGCCSHHHHHHHHHHTCCC---------
T ss_pred -----------HHHHHHHHHHh---CCCCCCHHHHHHHHHHhcccccccchHHHhccHHHHHHHHHHhccCCCccccccc
Q ss_pred ---HHHHHHHHHhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHhccchhHHHHHHHHHH
Q 008705 254 ---SLTKYEYLQGTFSFSNYIQAQIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVLYAKECFSALSYLAHRVF 330 (557)
Q Consensus 254 ---A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (557)
.+.-+++.+.........- ....++.-.|+|+.|+.++-+. +...-..++-.+...|-... -..++
T Consensus 277 e~ytL~~LQ~~I~~yGe~~F~~-lYf~vLlLtgqFE~AI~~L~~~------~~vdAVH~AIaL~~~gLL~~----~~~ll 345 (661)
T 2qx5_A 277 ERYSLEDFQNIIISYGPSRFSN-YYLQTLLLSGLYGLAIDYTYTF------SEMDAVHLAIGLASLKLFKI----DSSTR 345 (661)
T ss_dssp -CCCHHHHHHHHHHHCGGGGTT-CHHHHHHHTTCHHHHHHHHHTT------CHHHHHHHHHHHHHTTC------------
T ss_pred ccccHHHHHHHHHHhhhhhhhh-HHHHHHHHHhhHHHHHHHHHhc------CchhHHHHHHHHHHcCCccC----CCccc
Q ss_pred hhCCCChhHHHHHHHHH------hhhCchHHHHHHHHHHHhcC-cCCHHHHHH-HhHHHHhcCCchH-------------
Q 008705 331 MTDKYRPESCCIIGNYY------SLKGQHEKSVVYFRRALKLD-KNYLSAWTL-MGHEYVEMKNTPA------------- 389 (557)
Q Consensus 331 ~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~-p~~~~~~~~-l~~~~~~~~~~~~------------- 389 (557)
..++. .....++... +...+...|+.||--.-..+ ++....... +..+-.+.++++.
T Consensus 346 s~~~~--~~~lN~arLI~~Yt~~F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~ 423 (661)
T 2qx5_A 346 LTKKP--KRDIRFANILANYTKSFRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIP 423 (661)
T ss_dssp -----------CHHHHHHHHHTTTTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEEC
T ss_pred ccCCC--cccccHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCc
Q ss_pred -HHHHHHHHHhhCC---CChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHhHHhcC----------
Q 008705 390 -AIDAYRRAVDINP---RDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---------- 455 (557)
Q Consensus 390 -A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---------- 455 (557)
.++-+...+.+.. -...+....|.-....|++++|+.+|.-+-+.+.--.-+-..++.+... ..
T Consensus 424 G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~--~~~~~~~~~~~~ 501 (661)
T 2qx5_A 424 GVIEERQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSA--SDLDQPLVGPDD 501 (661)
T ss_dssp CHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SCTTSCSSCSSC
T ss_pred chHHHhhcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc--cccccccccccc
Q ss_pred ----cHHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHH--HHcCCHHHHHHHHHH
Q 008705 456 ----MLEEAIKCYRRAANCNDS-----------EAIALNQLAKLH--HALGRDEEAAFYYKK 500 (557)
Q Consensus 456 ----~~~~A~~~~~~al~~~p~-----------~~~~~~~la~~~--~~~g~~~~A~~~~~~ 500 (557)
+...-...+.+....++. ....+..+..++ ...|+++.|+..+++
T Consensus 502 ~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 502 NSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp CTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.38 E-value=22 Score=29.95 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=43.5
Q ss_pred CcCCHHHHHHHhHHHHhcCCchHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Q 008705 367 DKNYLSAWTLMGHEYVEMKNTPAAIDAYRRAVD--INPRDYRAWYGLGQAYEMMHMPLYALHYFRKSVFLQP 436 (557)
Q Consensus 367 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 436 (557)
+|.....|...+..+ ..++..++...|.-... +....+..|...|..+...|++.+|...|+..++..-
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344456666666654 23335566677666655 3444566666777777777777777777777777553
No 274
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.39 E-value=53 Score=31.22 Aligned_cols=69 Identities=6% Similarity=-0.115 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 476 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 476 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
.+...++..|...|+.++|..+++++-..+.......| .....+...+..+...+++..+...+-..+.
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35567788888999999999999988876655443343 3455566677888888998887777666654
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.38 E-value=33 Score=28.89 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHHhcCcHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 441 LWIAMAQCYETEQLHMLEEAIKCYRRAANCND--SEAIALNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 441 ~~~~l~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
+|..++..+. .+...++..+|.-.....- ..+..|...|..+...|++.+|..+|+..++
T Consensus 82 lWl~Ya~~~~---~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 82 IWIWYINLFL---SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHS---TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc---ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444431 2335566666666655532 3345555666666666666666666666666
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=68.69 E-value=40 Score=26.41 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=46.9
Q ss_pred cHHHHHHHHHhccchhHHHHHHHHHHhhCCCChhHHHHHHHHHhhhCchHHHHHHHHHHHhcC
Q 008705 305 DMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLD 367 (557)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 367 (557)
..+..-..+..+++.+++..+...++...+.+|+....+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 334444556667777888888777766777788889999999999999999998888887653
No 277
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=68.41 E-value=59 Score=28.18 Aligned_cols=56 Identities=9% Similarity=-0.034 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYS-LREFEQVEVIFEE 294 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~ 294 (557)
.+++.+..+.++|++.+....++.+.++. +.+-...+..+|-. .|....+...+..
T Consensus 9 v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiiss 66 (234)
T 2br9_A 9 VYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 66 (234)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46688888899999999999999887654 55555666665543 2444444444443
No 278
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=68.39 E-value=61 Score=28.33 Aligned_cols=60 Identities=7% Similarity=-0.082 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHh
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYS-LREFEQVEVIFEELLRN 298 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~ 298 (557)
.++|.+..+.++|++.+....++....+. +.+-...+..+|-. .|....+...+..+.+.
T Consensus 8 v~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqk 69 (248)
T 3uzd_A 8 VQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQK 69 (248)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 45688889999999999999999887665 55556666666643 35555566665544443
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.97 E-value=40 Score=26.96 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=56.0
Q ss_pred hHHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCChhHHHHH
Q 008705 105 EYRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLY 182 (557)
Q Consensus 105 ~y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 182 (557)
=.++|+..|.+... .+++|++....|...... ..+. .+.+.. ...+...+..+-..
T Consensus 50 lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~d-p~~i--------------------f~~L~~-~~IG~~~AlfYe~w 107 (152)
T 4a1g_A 50 LLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD-LHQF--------------------FEFLYN-HGIGTLSSPLYIAW 107 (152)
T ss_dssp HHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC-HHHH--------------------HHHHHT-TTTTTTBHHHHHHH
T ss_pred HHHHHHHHhcccccccCCHHHHHHHHHHHHhcCC-HHHH--------------------HHHHHH-CCCcHHHHHHHHHH
Confidence 35666666665443 778888887776654321 1222 222221 23456778888999
Q ss_pred HHHHHhcCChHHHHHHHHHHhccCCCC
Q 008705 183 GIVLKDKGNENLARTVFVESVNSYPWN 209 (557)
Q Consensus 183 g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (557)
|..+...|++.+|..+|+..++....-
T Consensus 108 A~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 108 AGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999876543
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.11 E-value=25 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhcC
Q 008705 477 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 511 (557)
Q Consensus 477 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 511 (557)
.+...+..+...|+|++|+++.+++...+......
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777777788888877777777655544433
No 281
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.99 E-value=91 Score=28.75 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 008705 178 GLYLYGIVLKDKGNENLARTVFVES 202 (557)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~a 202 (557)
.+-.++.-|.++++|++|++++-..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3444556678889999999876654
No 282
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=63.97 E-value=77 Score=27.93 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHh-cccHHHHHHHHHHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTF--SF-SNYIQAQIAKAQYS-LREFEQVEVIFEEL 295 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~ 295 (557)
.+++.+..+.++|++.+....++.+.+ +. +.+-...+..+|-. .|....+...+..+
T Consensus 12 v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissi 72 (260)
T 1o9d_A 12 VYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSI 72 (260)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 467888888999999999999998876 43 55555556555533 24444555555443
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=61.95 E-value=52 Score=26.57 Aligned_cols=67 Identities=9% Similarity=-0.002 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCCCC---HHHHHHHHH-hhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHH
Q 008705 178 GLYLYGIVLKDKGNENLARTVFVESVNSYPWN---WNAWSELKS-LCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKE 253 (557)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~-~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~ 253 (557)
--+..|..++..|+|=+|-++++.+-...+.. ...|..|++ + -.|......|+..-
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~l--------------------AvAl~H~~rgN~~G 93 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVA--------------------AGAYKHFDFEDDDG 93 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHH--------------------HHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--------------------HHHHHHHHhCCHHH
Confidence 34777888999999999999999999877654 345555533 2 23667778899999
Q ss_pred HHHHHHHHHhc
Q 008705 254 SLTKYEYLQGT 264 (557)
Q Consensus 254 A~~~~~~~l~~ 264 (557)
|...+.+++..
T Consensus 94 A~~ll~~Al~~ 104 (161)
T 2ijq_A 94 MRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998763
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.47 E-value=44 Score=27.09 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCChhHHHHHH
Q 008705 106 YRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYG 183 (557)
Q Consensus 106 y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g 183 (557)
.++|+..|.+... .+++|++....|.... ....+. .+.+.. ...+...+..|...|
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~-~~p~~i--------------------f~~L~~-~~IG~~~AlfY~~wA 103 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLC-NEPLDM--------------------YSYLHN-QGIGVSLAQFYISWA 103 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC-SCHHHH--------------------HHHHHH-TTSSTTBHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhc-CCHHHH--------------------HHHHHH-CCcchhhHHHHHHHH
Confidence 5666666665443 6788888876666542 111222 222222 234567788899999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCCCH
Q 008705 184 IVLKDKGNENLARTVFVESVNSYPWNW 210 (557)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 210 (557)
..+...|++.+|..+|+..++....-.
T Consensus 104 ~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 104 EEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999999998765433
No 285
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=56.20 E-value=32 Score=23.43 Aligned_cols=35 Identities=3% Similarity=-0.033 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCHH
Q 008705 236 MKDYFLASAYQELRMHKESLTKYEYLQGTFSFSNY 270 (557)
Q Consensus 236 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 270 (557)
+....+|..+...|++++|...|-+++...|.-..
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 33344577777777777777777777777665544
No 286
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=55.89 E-value=13 Score=26.27 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=9.2
Q ss_pred hcCCchHHHHHHHHHHh
Q 008705 383 EMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~ 399 (557)
..|++++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45556665555555443
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.10 E-value=47 Score=28.48 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhcC--CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHhhhhcCCCCChhHHHHHH
Q 008705 106 YRRAAHVLRDQTG--RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELSTSWKNGTVDPFGLYLYG 183 (557)
Q Consensus 106 y~~A~~~l~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g 183 (557)
.++|+..|.+... .+++|++....|.... .... .+...|.. ...+...+..|-..|
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~-~~p~--------------------~if~~L~~-~~IG~~~AlfYe~wA 157 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYI-DEPV--------------------ELFSFLAH-HHIGQESSIFYEEYA 157 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-SCHH--------------------HHHHHHHH-TTCSTTBHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHcc-CCHH--------------------HHHHHHHH-CCcchhHHHHHHHHH
Confidence 5566666665443 6778888876666432 1111 22222222 234567788899999
Q ss_pred HHHHhcCChHHHHHHHHHHhccCCC
Q 008705 184 IVLKDKGNENLARTVFVESVNSYPW 208 (557)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~ 208 (557)
..+...|++.+|..+|+..++....
T Consensus 158 ~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 158 NYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999987654
No 288
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=54.79 E-value=13 Score=26.14 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=8.9
Q ss_pred hcCCchHHHHHHHHHHh
Q 008705 383 EMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 383 ~~~~~~~A~~~~~~al~ 399 (557)
..|++++|+.+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44555555555555443
No 289
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.66 E-value=34 Score=23.31 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcCC
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKNY 370 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 370 (557)
.+|..+...|++++|..+|-+|+...|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45666666666666666666666665553
No 290
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.44 E-value=18 Score=35.14 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhhcCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCc
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERME-AEEREG--PNMVEALIFLATHCRAHGRFEEAEVYCTRLLDY-TGPV 549 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 549 (557)
...+-.+|++.|+..-+...++..-.... ...... .+.+..++.+|+++...++|.+|.+.+..|+.. .|.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34566889999999998888865443100 000011 245678889999999999999999999999998 6654
No 291
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.66 E-value=24 Score=25.11 Aligned_cols=29 Identities=10% Similarity=-0.082 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
+-.+-.++..+.+.|+|++||++.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566788999999999999999988763
No 292
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=47.42 E-value=29 Score=29.46 Aligned_cols=36 Identities=8% Similarity=-0.126 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhccCCCCHH
Q 008705 176 PFGLYLYGIVLKDKGNENLARTVFVESVNSYPWNWN 211 (557)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 211 (557)
...+|.+|+.+...++|.+|.+.|..|++..|....
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 457899999999999999999999999999987643
No 293
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=45.71 E-value=67 Score=23.20 Aligned_cols=35 Identities=3% Similarity=0.017 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCH
Q 008705 235 WMKDYFLASAYQELRMHKESLTKYEYLQGTFSFSN 269 (557)
Q Consensus 235 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 269 (557)
++....+|..+...|+++.|+.+|-+++...|.-.
T Consensus 20 Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 20 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 34445578888888999999998888887766533
No 294
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.83 E-value=1.2e+02 Score=24.40 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCCC---H---HHHHH---HHHHHHhcccHHHHHHHHHHHHHh
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSFS---N---YIQAQ---IAKAQYSLREFEQVEVIFEELLRN 298 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~---~~~~~---la~~~~~~g~~~~A~~~~~~~l~~ 298 (557)
+..+..++..|+|-+|-+.++.+....+.. . ..+.+ .|..+...|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455788888999999999999998876544 1 12233 344566789999999999999874
No 295
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=41.61 E-value=29 Score=24.02 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=17.9
Q ss_pred HHHHhHHHHhcCCchHHHHHHHHHHh
Q 008705 374 WTLMGHEYVEMKNTPAAIDAYRRAVD 399 (557)
Q Consensus 374 ~~~l~~~~~~~~~~~~A~~~~~~al~ 399 (557)
...+|+-|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34566777777777777777776665
No 296
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=41.42 E-value=86 Score=29.00 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 474 EAIALNQLAKLHHALG--RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 474 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
.|.++-+||.+-...- ....++..|.+++...... ....+..-|..+|-++.+.+++.+|+..+-.+-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~y--Y~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKRE--YSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHH--STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHH--hccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3455555555544322 1223778888888743322 2344566788899999999999999999987754
No 297
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.23 E-value=1.7e+02 Score=27.11 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHhCCh--HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHH
Q 008705 404 DYRAWYGLGQAYEMMHMP--LYALHYFRKSVFL-----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 468 (557)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al 468 (557)
.+.++.+||.+-...--. ..++.+|.+++.. .......+..+|..+.+ .+++.+|++.+-.+-
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR--~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYR--KKKYYEAIASWVDAG 323 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhh--cchHHHHHHHHHHHH
Confidence 455666666655433222 2266666666653 22334455666666666 677777776666553
No 298
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=40.04 E-value=79 Score=22.76 Aligned_cols=62 Identities=11% Similarity=-0.068 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhccCCCC-HHHHHHHHHhhhcHHHHhhcCCChhHHHHHHHHHHHHHHhhhHHHHHHH
Q 008705 180 YLYGIVLKDKGNENLARTVFVESVNSYPWN-WNAWSELKSLCTSIDILNSLNLNNHWMKDYFLASAYQELRMHKESLTKY 258 (557)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 258 (557)
+..|..++..|+|=+|-++++..-...|.. ...|..++.+. .|......|+. |...+
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~A--------------------va~~h~~~gn~--a~~ll 62 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLA--------------------AALHQRRLGRP--GLRNL 62 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--------------------HHHHHHHTTCC--CHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHH--------------------HHHHHHHcCcH--HHHHH
Confidence 557888899999999999999998877643 23344543322 25555566776 77777
Q ss_pred HHHHh
Q 008705 259 EYLQG 263 (557)
Q Consensus 259 ~~~l~ 263 (557)
.+++.
T Consensus 63 ~~a~~ 67 (94)
T 2cwy_A 63 RKAEA 67 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77755
No 299
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.43 E-value=39 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
.-+...|.-.-+.|++++|+.+|.++++
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456667778899999999999998876
No 300
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.82 E-value=64 Score=27.25 Aligned_cols=73 Identities=8% Similarity=-0.043 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHhcCCchHHHHHHHHHHhhCCCChHH-----HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008705 372 SAWTLMGHEYVEMKNTPAAIDAYRRAVDINPRDYRA-----WYGLGQAYEMMHMPLYALHYFRKSVFLQPNDSRLWIAMA 446 (557)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 446 (557)
.-.+.+|.+++..++|.+|.+.+..|+...|.+... +..+.-+-..+|+... ...+++- +. ..+..+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~~----~~--~~y~~L~ 87 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKKY----HL--MQFAEVT 87 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHT----TC--GGGHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhhC----ch--hHHHHHH
Confidence 346789999999999999999999999988876433 3334444456777654 3334321 11 2366677
Q ss_pred HHHhH
Q 008705 447 QCYET 451 (557)
Q Consensus 447 ~~~~~ 451 (557)
.+...
T Consensus 88 ~Avr~ 92 (203)
T 3t5x_A 88 RAVSE 92 (203)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 301
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.20 E-value=91 Score=30.24 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhc
Q 008705 407 AWYGLGQAYEMMHMPLYALHYFRKSVFL 434 (557)
Q Consensus 407 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 434 (557)
..|.+|.++...++|.+|...+..|+..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3455555555566666666665555555
No 302
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.61 E-value=48 Score=23.21 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
.-+...|.-.-+.|+|++|+.+|..+++
T Consensus 12 i~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 12 RKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3456667778899999999999998876
No 303
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.73 E-value=54 Score=23.18 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 177 FGLYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
..+...|.-.-..|++++|+.+|..+++
T Consensus 17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 17 ATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456677777889999999999999886
No 304
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=33.65 E-value=2.3e+02 Score=24.44 Aligned_cols=60 Identities=5% Similarity=-0.157 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHh
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTFSF-SNYIQAQIAKAQYS-LREFEQVEVIFEELLRN 298 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~ 298 (557)
.++|.+..+.++|++.+....++.+.++. +.+-...+..+|-. .|....+...+..+.+.
T Consensus 12 v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqk 73 (236)
T 3iqu_A 12 IQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQK 73 (236)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 56688889999999999999999887665 55556666666644 35556666666554433
No 305
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=32.92 E-value=52 Score=23.76 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=20.2
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHhcCcC
Q 008705 342 IIGNYYSLKGQHEKSVVYFRRALKLDKN 369 (557)
Q Consensus 342 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 369 (557)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4677777777777777777777776554
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=32.43 E-value=3e+02 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLE 503 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~ 503 (557)
|..+|-.+++.+++.+|+..+..+-.
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 307
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=31.82 E-value=1.4e+02 Score=28.23 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 494 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 494 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
++..|.+++...... ....+..-|..+|-++.+.+++.+|+..+-.+-.
T Consensus 298 ~~~L~~~AI~sa~~~--Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTY--YRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHH--STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 677777777633221 2345566788899999999999999999987754
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.43 E-value=2.5e+02 Score=24.03 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHhc
Q 008705 436 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 470 (557)
Q Consensus 436 p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~~ 470 (557)
-..+..|...|..+.. .|++.+|..+|+.+++.
T Consensus 147 ~~~AlfYe~wA~~lE~--~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 147 QESSIFYEEYANYFES--RGLFQKADEVYQKGKRM 179 (223)
T ss_dssp TTBHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHc
Confidence 3445555566666666 66666666666666554
No 309
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=28.47 E-value=2.5e+02 Score=26.65 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHHhCCh--HHHHHHHHHHHhc-----CCCCHHHHHHHHHHHhHHhcCcHHHHHHHHHHHHh
Q 008705 403 RDYRAWYGLGQAYEMMHMP--LYALHYFRKSVFL-----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 469 (557)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~al~ 469 (557)
..+.++.+||.+-...-.. ..++.+|++++.. .......|..+|-.+.+ .+++.+|++.+..+-.
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R--~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR--NRNVREALQAWADTAT 331 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHH--hhhHHHHHHHhhhhhh
Confidence 3466777777766543322 2367777777763 23345566677777777 7888888877776643
No 310
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.79 E-value=1.5e+02 Score=20.42 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 008705 478 LNQLAKLHHALGRDEEAAFYYKKDLERMEAE 508 (557)
Q Consensus 478 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 508 (557)
...+|+=|...|+|+.|+.+|+.+++.+.+.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999999988865543
No 311
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=27.69 E-value=2.4e+02 Score=22.62 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=54.4
Q ss_pred hhHHHHHHHhhhhhhHHHHHHHHhhhcC----CchhhHHHHHHHHhhcccchHHHHHhhCCCCCchhhchhHHHHHHHHh
Q 008705 91 SDFYLLAKSYFDCREYRRAAHVLRDQTG----RRSVFLRCYALYLAGEKRKEEEMIELEGPLGKSNAVNRELISLERELS 166 (557)
Q Consensus 91 ~~~~~la~~~~~~~~y~~A~~~l~~~~~----~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (557)
...+.-|...|-..+|...+..|++... ....+..+++. +.++.-..++-..++..
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SY-I~~e~Ls~eQKenIln~------------------- 68 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSY-VMTESLTEEQRQTVSNN------------------- 68 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHH-HHTSSSCHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHH-HHccCCCHHHHHHHHhh-------------------
Confidence 6778889999999999999999998754 22344444433 43433222222222111
Q ss_pred hhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008705 167 TSWKNGTVDPFGLYLYGIVLKDKGNENLARTVFVES 202 (557)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 202 (557)
-.....-.+++=+++...|++++|+.+-+..
T Consensus 69 -----itlkSde~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 69 -----ITLKTDEQYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp -----CCTTSCHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----CCccCCHHHHHHHHHHcCCchHHHHHHHHhc
Confidence 1222233455557788899999999887664
No 312
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.05 E-value=7.1e+02 Score=27.97 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHhcCcCCHHHHHHHhHHHH
Q 008705 352 QHEKSVVYFRRALKLDKNYLSAWTLMGHEYV 382 (557)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 382 (557)
+.+++.++|++.++..|++..++..+-+.+.
T Consensus 1122 ~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHPKHLQANLLLIQNIE 1152 (1354)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCccHHHHHHHHHhhh
Confidence 4566777788888778887777766655443
No 313
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=26.58 E-value=1.8e+02 Score=20.80 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=18.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhh
Q 008705 485 HHALGRDEEAAFYYKKDLERMEAEE 509 (557)
Q Consensus 485 ~~~~g~~~~A~~~~~~al~~~~~~~ 509 (557)
.-..|++++|+.+|..+++.+....
T Consensus 25 ~D~~g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 25 LDAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888888655433
No 314
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.71 E-value=80 Score=22.24 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=28.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhccCC
Q 008705 174 VDPFGLYLYGIVLKDKGNENLARTVFVESVNSYP 207 (557)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 207 (557)
.++..+...|.-+++.++|.+|...|+++.....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 4566777888999999999999999999986544
No 315
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.18 E-value=1.8e+02 Score=20.41 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 008705 480 QLAKLHHALGRDEEAAFYYKKDLERMEAEE 509 (557)
Q Consensus 480 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 509 (557)
..|.-.-..|++++|+.+|..+++.+....
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334445677888888888888887655443
No 316
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.04 E-value=2.5e+02 Score=26.61 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 008705 493 EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 493 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 544 (557)
.++..|++++...... ....+...|..+|-++.+.+++.+|+..+..+-.
T Consensus 282 ~~~~Lf~~AI~~ar~~--Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTY--YRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHHH--STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh--cccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 3556777777633221 2344566788899999999999999999988754
No 317
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.36 E-value=4.1e+02 Score=24.22 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 008705 272 QAQIAKAQYSLREFEQVEVIFEELLRNDP 300 (557)
Q Consensus 272 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p 300 (557)
....|.-+...|++.+|+..|+.++..-|
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 45667778889999999999999987654
No 318
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.53 E-value=1.7e+02 Score=20.87 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhc
Q 008705 179 LYLYGIVLKDKGNENLARTVFVESVN 204 (557)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (557)
+...|.-.-..|+|++|+.+|..+++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555555666666666555544
No 319
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.41 E-value=4e+02 Score=23.40 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Q 008705 491 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR-AHGRFEEAEVYCTRLLD 544 (557)
Q Consensus 491 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 544 (557)
.+.|...|+.|.+....-.+.+|-.....++.+..|. -+|+.++|....+++++
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578888999988551112233433344445555554 48999999998888775
No 320
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.04 E-value=2.1e+02 Score=23.93 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=20.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 008705 274 QIAKAQYSLREFEQVEVIFEELLRNDPYRVDDMDMYSNVL 313 (557)
Q Consensus 274 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 313 (557)
+.-.++...|.+++|.+.+++....++.+......+..+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3344566677777777777777766665554444444333
No 321
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.97 E-value=4.3e+02 Score=23.21 Aligned_cols=56 Identities=7% Similarity=-0.091 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHhc-ccHHHHHHHHHH
Q 008705 239 YFLASAYQELRMHKESLTKYEYLQGTF---SF-SNYIQAQIAKAQYSL-REFEQVEVIFEE 294 (557)
Q Consensus 239 ~~la~~~~~~~~~~~A~~~~~~~l~~~---p~-~~~~~~~la~~~~~~-g~~~~A~~~~~~ 294 (557)
.+++.+..+.++|++.+....++.+.+ +. +.+-...+..+|-.. |....+...+..
T Consensus 32 v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiiss 92 (260)
T 2npm_A 32 VYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISS 92 (260)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456777778888888888888887765 33 455555555555432 333444444433
Done!