BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008706
         (557 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4XYE0|IF2_PSEMY Translation initiation factor IF-2 OS=Pseudomonas mendocina (strain
           ymp) GN=infB PE=3 SV=1
          Length = 828

 Score = 35.0 bits (79), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 427 SSPVEVLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQVGRSQSCVG 477
           S PVE+LG+ +G    G+  M  A+  ++R   + R+GKF++V  +++  G
Sbjct: 562 SIPVEILGL-DGTPDAGDEMMVVADEKKAREVALFRQGKFREVKLARAHAG 611


>sp|Q9ZF22|IF2_PROVU Translation initiation factor IF-2 OS=Proteus vulgaris GN=infB PE=3
           SV=1
          Length = 917

 Score = 34.7 bits (78), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 417 NGVQSEVQSS--SSPVEVLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQV 469
           N +  EVQS+  S PVE+LG+ N  S+  E T+   E  ++R   + R+GKF++V
Sbjct: 638 NELGQEVQSAGPSMPVEILGLSNVPSAGDEATVVRDEK-KAREVALYRQGKFREV 691


>sp|B4F2B9|IF2_PROMH Translation initiation factor IF-2 OS=Proteus mirabilis (strain
           HI4320) GN=infB PE=3 SV=1
          Length = 916

 Score = 34.7 bits (78), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 417 NGVQSEVQSS--SSPVEVLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQV 469
           N +  EVQS+  S PVE+LG+ N  S+  E T+   E  ++R   + R+GKF++V
Sbjct: 637 NELGKEVQSAGPSMPVEILGLSNVPSAGDEATVVRDEK-KAREVALYRQGKFREV 690


>sp|P55440|Y4FB_RHISN Uncharacterized protein y4fB OS=Rhizobium sp. (strain NGR234)
           GN=NGR_a03790 PE=4 SV=1
          Length = 664

 Score = 33.1 bits (74), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 16/97 (16%)

Query: 31  AMARISVAA----SAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEI----------RLQN 76
           A+ RI+V A    S+  GTGFLI   LLLT +  + S   A  A +          RL+ 
Sbjct: 73  AVCRINVPAPVGDSSDWGTGFLIGPRLLLTNNHVIDSAEDALKATVEFGYELDAEGRLKR 132

Query: 77  GVAAALVPHRFFITS--SVLDLTIVGLDSADGDSNAP 111
                L P   F+TS    LD T+V ++    D   P
Sbjct: 133 TTRFRLSPQDGFVTSPRDALDYTVVAIEENSEDGATP 169


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.127    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,644,012
Number of Sequences: 539616
Number of extensions: 8873085
Number of successful extensions: 25856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 25463
Number of HSP's gapped (non-prelim): 298
length of query: 557
length of database: 191,569,459
effective HSP length: 123
effective length of query: 434
effective length of database: 125,196,691
effective search space: 54335363894
effective search space used: 54335363894
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)