BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008708
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 289 EALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART---------VFKCMRRDRCSP 339
EAL +++E GV+ + YN+LL +++ ++ +FK D+ P
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQXIVDKVVP 103
Query: 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 398
+ ++T V D E A ++ K G P + +YG + G+ + + +K E+
Sbjct: 104 NEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
>pdb|2HYU|A Chain A, Human Annexin A2 With Heparin Tetrasaccharide Bound
pdb|2HYV|A Chain A, Human Annexin A2 With Heparin Hexasaccharide Bound
pdb|2HYW|A Chain A, Human Annexin A2 With Calcium Bound
pdb|2HYW|B Chain B, Human Annexin A2 With Calcium Bound
Length = 308
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 253 KEVSKIYDQMQRAGLQPDVVS-----YALLINAYGKARREEEALAVFEEMLDAGVRPTHK 307
+E++++Y +M + L+ D++S + L+ A K RR E+ + E++D R +
Sbjct: 110 QEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYD 169
Query: 308 A 308
A
Sbjct: 170 A 170
>pdb|1XJL|A Chain A, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
pdb|1XJL|B Chain B, Structure Of Human Annexin A2 In The Presence Of Calcium
Ions
Length = 319
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 253 KEVSKIYDQMQRAGLQPDVVS-----YALLINAYGKARREEEALAVFEEMLDAGVRPTHK 307
+E++++Y +M + L+ D++S + L+ A K RR E+ + E++D R +
Sbjct: 121 QEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYD 180
Query: 308 A 308
A
Sbjct: 181 A 181
>pdb|1W7B|A Chain A, Annexin A2: Does It Induce Membrane Aggregation By A New
Multimeric State Of The Protein
Length = 339
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 253 KEVSKIYDQMQRAGLQPDVVS-----YALLINAYGKARREEEALAVFEEMLDAGVRPTHK 307
+E++++Y +M + L+ D++S + L+ A K RR E+ + E++D R +
Sbjct: 141 QEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYD 200
Query: 308 A 308
A
Sbjct: 201 A 201
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396
S + +Y AY+ ++ GA K RLK+ G+ +IT G +K + K+ LE +
Sbjct: 78 ISAGVIAYHNTKFAYLR--EVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLE-LD 134
Query: 397 EIYDKMRVNGI----KPNQTIFTTIMDAY 421
+ ++ + ++ KP+ IF + A+
Sbjct: 135 DFFEHVIISDFEGVKKPHPKIFKKALKAF 163
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT-IMDAYGKNKDFDSAVVWYKEMESCG 441
+G +L + M+ + + G P + + M+ G +D+ AV+WYK+ G
Sbjct: 50 FQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG 109
Query: 442 FPPDQKAKNIL 452
P Q+ ++
Sbjct: 110 LPQAQQNLGVM 120
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 133 SHTALMEAYGRGGRYKNAEAIFRR 156
++T L Y GG+Y NAE IFR+
Sbjct: 340 AYTDLANXYAEGGQYSNAEDIFRK 363
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 133 SHTALMEAYGRGGRYKNAEAIFRR 156
++T L Y GG+Y NAE IFR+
Sbjct: 340 AYTDLANMYAEGGQYSNAEDIFRK 363
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 242 YNSLM---SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV---FE 295
YN++M + + +KE+ + ++ AGL PD++SYA + G R++++A + E
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG--RQDQDAGTIERCLE 225
Query: 296 EMLDAGVR 303
+M G++
Sbjct: 226 QMSQEGLK 233
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 391 NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKN 450
N+EK++EI DK ++N I N + ++A E ES G+ D A N
Sbjct: 111 NIEKIIEILDKKKINHIVANTIV-------------LENAAKIINEFESRGYNVD--AVN 155
Query: 451 ILLSLAK 457
+ +S AK
Sbjct: 156 VFISYAK 162
>pdb|3VN5|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase H3
Length = 257
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438
K Y K NL KMM + K+ + +K + ++D Y + F V++ E E
Sbjct: 144 KLYRKFRNLNKMMTHFYKLLIERVKEECGVSEVVVDKYQPSNPFGEDVIFETEAE 198
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 193 LDEEKSPLKPDQKMFHMMIYMYKKAG---GYEKARKLFA---LMAERGVQQSTVTYNSLM 246
L E K P+ P + + H ++Y G E+AR + A L AE G ST T +
Sbjct: 138 LKEGKEPIPPREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAF 197
Query: 247 SFETN 251
S ET+
Sbjct: 198 STETD 202
>pdb|3JPZ|A Chain A, Crystal Structure Of Lombricine Kinase
pdb|3JPZ|B Chain B, Crystal Structure Of Lombricine Kinase
pdb|3JQ3|A Chain A, Crystal Structure Of Lombricine Kinase, Complexed With
Substrate Adp
Length = 366
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 267 LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNIL-------LDAFAIS 319
+QP V ++ N G +EE+ VF+E+ DA + HK + LDA +
Sbjct: 48 IQPSVDNFG---NCIGLIAGDEESYEVFKELFDAVINEKHKGFGPNDSQPAPDLDASKLV 104
Query: 320 GMVDQARTVFKC-MRRDR-----CSPDICS 343
G + V C +R R C P C+
Sbjct: 105 GGQFDEKYVKSCRIRTGRGIRGLCYPPSCT 134
>pdb|3DM7|A Chain A, Crystal Structure Of The Vps75 Histone Chaperone
pdb|3DM7|B Chain B, Crystal Structure Of The Vps75 Histone Chaperone
Length = 234
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 58 LPKDLVLGTLVRLKQLKKWNVVSEV-LEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAE 116
L + + +R K + + ++ +EWL ++S ++ DF + +G +GDF + +
Sbjct: 64 LSQHVSFANYIRASDFKYXDTIDKIKVEWLALESE-XYDTRDFSITFHFHGIEGDFKEQQ 122
Query: 117 KVLSFMNKKG 126
F KKG
Sbjct: 123 VTKVFQIKKG 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,899,687
Number of Sequences: 62578
Number of extensions: 582620
Number of successful extensions: 1616
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 47
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)