Query 008708
Match_columns 557
No_of_seqs 728 out of 3553
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 15:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.5E-67 1.4E-71 560.9 40.7 503 14-555 240-760 (857)
2 PLN03081 pentatricopeptide (PP 100.0 6.8E-66 1.5E-70 540.2 40.1 498 23-555 82-597 (697)
3 PLN03218 maturation of RBCL 1; 100.0 6.1E-60 1.3E-64 497.4 60.0 470 13-490 387-891 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-59 2.7E-64 495.0 57.5 457 23-488 365-854 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 4.6E-57 1E-61 484.8 44.4 454 14-486 139-630 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-53 3.3E-58 447.0 47.3 449 14-484 105-568 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5E-25 1.1E-29 242.2 56.9 387 70-472 475-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-24 7.5E-29 235.5 56.9 441 14-472 381-829 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 3.2E-21 6.9E-26 181.4 36.6 370 95-480 115-490 (966)
10 PRK11788 tetratricopeptide rep 99.9 6E-21 1.3E-25 188.2 37.5 310 100-447 39-354 (389)
11 PRK11788 tetratricopeptide rep 99.9 2.3E-20 4.9E-25 184.1 34.6 299 137-474 41-346 (389)
12 PRK11447 cellulose synthase su 99.9 3.3E-18 7.1E-23 189.2 54.7 361 103-473 276-738 (1157)
13 PRK15174 Vi polysaccharide exp 99.9 9.6E-19 2.1E-23 180.9 44.6 330 99-439 45-380 (656)
14 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-18 1.2E-22 175.9 49.8 391 70-475 137-571 (615)
15 PRK11447 cellulose synthase su 99.9 1.4E-17 3E-22 184.3 54.7 420 38-475 125-700 (1157)
16 PRK10049 pgaA outer membrane p 99.9 4.4E-18 9.6E-23 179.9 48.4 406 55-476 10-457 (765)
17 KOG4626 O-linked N-acetylgluco 99.9 2.1E-18 4.5E-23 162.7 36.7 367 67-454 123-498 (966)
18 PRK10049 pgaA outer membrane p 99.9 2.9E-17 6.4E-22 173.7 47.8 418 22-456 12-470 (765)
19 PRK15174 Vi polysaccharide exp 99.9 5.2E-17 1.1E-21 168.1 47.0 362 64-438 46-418 (656)
20 TIGR00990 3a0801s09 mitochondr 99.9 9.9E-17 2.1E-21 166.6 47.2 368 99-479 130-541 (615)
21 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.5E-19 151.2 52.3 435 30-478 37-516 (822)
22 PRK09782 bacteriophage N4 rece 99.8 2.6E-14 5.7E-19 151.6 52.6 220 250-478 490-709 (987)
23 KOG2002 TPR-containing nuclear 99.8 2.3E-15 5.1E-20 149.7 38.9 412 62-482 309-752 (1018)
24 PRK09782 bacteriophage N4 rece 99.8 7.3E-14 1.6E-18 148.3 50.6 200 271-479 477-676 (987)
25 PRK14574 hmsH outer membrane p 99.8 1.2E-13 2.6E-18 143.7 51.0 411 30-454 73-525 (822)
26 KOG4422 Uncharacterized conser 99.7 3.5E-13 7.6E-18 122.4 40.3 426 24-473 112-588 (625)
27 KOG1915 Cell cycle control pro 99.7 8.6E-12 1.9E-16 115.0 45.6 463 3-479 45-540 (677)
28 KOG2076 RNA polymerase III tra 99.7 2.5E-12 5.4E-17 127.7 39.6 358 106-471 149-551 (895)
29 KOG2002 TPR-containing nuclear 99.7 3.9E-12 8.4E-17 127.2 38.8 429 34-473 208-707 (1018)
30 KOG2003 TPR repeat-containing 99.7 2.1E-13 4.7E-18 124.6 27.3 206 249-461 503-709 (840)
31 KOG2076 RNA polymerase III tra 99.6 2E-11 4.3E-16 121.4 40.8 363 68-439 147-554 (895)
32 KOG1155 Anaphase-promoting com 99.6 2.6E-11 5.7E-16 111.7 38.6 364 93-473 161-534 (559)
33 KOG2003 TPR repeat-containing 99.6 7E-12 1.5E-16 114.8 34.6 423 41-474 217-688 (840)
34 PRK10747 putative protoheme IX 99.6 1.2E-11 2.6E-16 121.0 39.2 292 109-439 97-389 (398)
35 KOG1126 DNA-binding cell divis 99.6 2E-13 4.3E-18 131.2 24.9 287 181-479 334-624 (638)
36 KOG4422 Uncharacterized conser 99.6 3.6E-12 7.9E-17 115.9 31.3 338 98-456 118-478 (625)
37 PRK10747 putative protoheme IX 99.6 1E-11 2.2E-16 121.4 37.3 283 144-473 97-388 (398)
38 KOG0495 HAT repeat protein [RN 99.6 6.1E-10 1.3E-14 107.0 47.0 367 101-484 521-889 (913)
39 TIGR00540 hemY_coli hemY prote 99.6 9.2E-12 2E-16 122.5 36.2 292 108-437 96-396 (409)
40 PF13429 TPR_15: Tetratricopep 99.6 4.8E-15 1E-19 138.4 12.5 261 101-402 13-274 (280)
41 PF13429 TPR_15: Tetratricopep 99.6 4.8E-15 1E-19 138.5 12.3 218 249-473 57-275 (280)
42 TIGR00540 hemY_coli hemY prote 99.6 7.2E-12 1.6E-16 123.2 34.6 288 143-472 96-396 (409)
43 COG2956 Predicted N-acetylgluc 99.6 8E-12 1.7E-16 109.8 29.9 291 144-473 48-345 (389)
44 KOG0495 HAT repeat protein [RN 99.6 4.3E-10 9.4E-15 108.0 43.2 385 73-472 419-813 (913)
45 KOG1915 Cell cycle control pro 99.6 1.5E-09 3.2E-14 100.6 44.5 447 12-473 89-583 (677)
46 KOG0547 Translocase of outer m 99.6 2.4E-10 5.2E-15 106.1 37.5 386 70-472 125-563 (606)
47 COG2956 Predicted N-acetylgluc 99.6 8.6E-11 1.9E-15 103.5 32.5 303 98-439 38-346 (389)
48 KOG1155 Anaphase-promoting com 99.5 6.1E-10 1.3E-14 102.8 38.4 351 70-439 174-535 (559)
49 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.3E-15 106.1 32.9 293 109-439 97-389 (400)
50 KOG1126 DNA-binding cell divis 99.5 1.4E-11 3.1E-16 118.7 27.1 283 111-439 334-619 (638)
51 COG3071 HemY Uncharacterized e 99.5 1.6E-09 3.6E-14 98.5 37.7 286 143-473 96-388 (400)
52 KOG1174 Anaphase-promoting com 99.5 9.6E-10 2.1E-14 100.0 32.0 369 99-480 100-505 (564)
53 KOG1156 N-terminal acetyltrans 99.4 8.1E-09 1.8E-13 99.5 39.1 392 64-477 11-470 (700)
54 KOG0547 Translocase of outer m 99.4 1E-09 2.3E-14 102.0 30.8 365 99-481 118-538 (606)
55 KOG1129 TPR repeat-containing 99.4 9.2E-11 2E-15 103.3 22.8 233 208-478 227-461 (478)
56 TIGR02521 type_IV_pilW type IV 99.4 2.5E-10 5.3E-15 103.9 26.9 200 270-473 30-230 (234)
57 PRK12370 invasion protein regu 99.4 7.9E-10 1.7E-14 113.1 32.0 233 164-439 254-501 (553)
58 TIGR02521 type_IV_pilW type IV 99.4 5.4E-10 1.2E-14 101.6 27.5 132 97-232 32-163 (234)
59 KOG3785 Uncharacterized conser 99.4 9.6E-09 2.1E-13 91.8 33.2 415 41-480 38-495 (557)
60 KOG1840 Kinesin light chain [C 99.4 3.6E-10 7.9E-15 110.1 26.6 247 131-403 199-477 (508)
61 PRK12370 invasion protein regu 99.4 6.2E-10 1.3E-14 113.9 29.3 269 128-441 253-536 (553)
62 KOG1840 Kinesin light chain [C 99.4 3.2E-10 7E-15 110.5 24.5 248 96-368 199-477 (508)
63 KOG2376 Signal recognition par 99.4 2E-07 4.3E-12 89.3 41.7 417 41-473 28-518 (652)
64 KOG1173 Anaphase-promoting com 99.3 2.9E-09 6.2E-14 101.0 28.2 284 128-454 241-530 (611)
65 PF12569 NARP1: NMDA receptor- 99.3 2.1E-08 4.6E-13 99.2 35.5 288 141-438 14-332 (517)
66 KOG1173 Anaphase-promoting com 99.3 5.7E-09 1.2E-13 99.1 29.6 277 161-478 239-521 (611)
67 KOG4162 Predicted calmodulin-b 99.3 1.6E-07 3.5E-12 92.7 39.9 379 92-477 319-785 (799)
68 KOG1129 TPR repeat-containing 99.3 6.9E-10 1.5E-14 97.9 20.0 223 171-403 228-456 (478)
69 KOG4318 Bicoid mRNA stability 99.3 6.5E-10 1.4E-14 110.4 21.9 90 118-222 12-101 (1088)
70 KOG4318 Bicoid mRNA stability 99.3 1.5E-09 3.2E-14 107.9 24.3 243 92-356 21-286 (1088)
71 KOG2047 mRNA splicing factor [ 99.3 2.3E-06 5.1E-11 82.9 43.8 367 98-471 250-719 (835)
72 KOG1174 Anaphase-promoting com 99.3 4.8E-08 1E-12 89.3 30.5 307 127-446 190-504 (564)
73 PF12569 NARP1: NMDA receptor- 99.3 1.5E-07 3.2E-12 93.3 36.8 129 273-404 196-333 (517)
74 KOG2047 mRNA splicing factor [ 99.2 2.7E-06 5.8E-11 82.5 42.5 199 273-473 389-613 (835)
75 PF13041 PPR_2: PPR repeat fam 99.2 3.9E-11 8.4E-16 78.5 6.6 47 340-386 2-48 (50)
76 PF13041 PPR_2: PPR repeat fam 99.2 5.2E-11 1.1E-15 77.9 6.8 50 374-423 1-50 (50)
77 KOG3785 Uncharacterized conser 99.2 8E-07 1.7E-11 79.8 33.9 384 67-473 29-455 (557)
78 COG3063 PilF Tfp pilus assembl 99.2 4.1E-08 8.9E-13 83.0 23.5 198 273-474 37-235 (250)
79 PRK11189 lipoprotein NlpI; Pro 99.2 7.5E-08 1.6E-12 90.2 28.2 217 75-300 41-265 (296)
80 PRK11189 lipoprotein NlpI; Pro 99.2 7.1E-08 1.5E-12 90.4 27.7 171 270-449 97-273 (296)
81 COG3063 PilF Tfp pilus assembl 99.1 1.1E-07 2.4E-12 80.5 24.8 131 99-233 38-168 (250)
82 KOG1156 N-terminal acetyltrans 99.1 4.1E-06 9E-11 81.4 38.6 384 72-471 87-507 (700)
83 cd05804 StaR_like StaR_like; a 99.1 1E-06 2.2E-11 85.8 35.0 199 96-333 6-213 (355)
84 KOG0548 Molecular co-chaperone 99.1 5E-07 1.1E-11 85.8 29.8 396 70-477 12-457 (539)
85 KOG2376 Signal recognition par 99.1 7.5E-06 1.6E-10 78.8 37.2 397 61-477 13-489 (652)
86 KOG4162 Predicted calmodulin-b 99.1 1.2E-05 2.7E-10 79.8 39.3 370 60-439 322-782 (799)
87 cd05804 StaR_like StaR_like; a 99.1 2.3E-06 4.9E-11 83.3 34.7 202 271-473 114-334 (355)
88 KOG4340 Uncharacterized conser 99.0 2.3E-06 5E-11 75.1 26.4 199 57-268 7-210 (459)
89 KOG4340 Uncharacterized conser 98.9 4.2E-06 9.1E-11 73.6 27.4 335 40-403 25-373 (459)
90 PRK04841 transcriptional regul 98.9 1.1E-05 2.3E-10 89.1 37.7 342 139-480 382-765 (903)
91 KOG3617 WD40 and TPR repeat-co 98.9 7.5E-07 1.6E-11 88.4 24.6 326 95-471 725-1105(1416)
92 KOG0548 Molecular co-chaperone 98.9 6.4E-05 1.4E-09 71.9 36.5 390 41-454 18-467 (539)
93 KOG1914 mRNA cleavage and poly 98.9 7.7E-05 1.7E-09 71.3 35.3 409 55-473 15-499 (656)
94 KOG1125 TPR repeat-containing 98.9 5.6E-07 1.2E-11 86.2 21.0 256 141-430 295-561 (579)
95 KOG0624 dsRNA-activated protei 98.9 3.8E-05 8.2E-10 69.1 30.7 313 101-447 43-375 (504)
96 KOG0624 dsRNA-activated protei 98.8 5E-05 1.1E-09 68.3 30.8 305 68-406 46-371 (504)
97 PF04733 Coatomer_E: Coatomer 98.8 2.8E-07 6.2E-12 85.0 17.6 148 281-439 112-264 (290)
98 KOG3616 Selective LIM binding 98.8 4E-06 8.8E-11 82.4 24.9 168 278-472 739-908 (1636)
99 PRK04841 transcriptional regul 98.8 3.4E-05 7.4E-10 85.2 35.9 337 104-440 382-760 (903)
100 KOG3616 Selective LIM binding 98.8 4.8E-05 1E-09 75.1 31.5 193 210-437 712-908 (1636)
101 PF04733 Coatomer_E: Coatomer 98.8 7.9E-08 1.7E-12 88.7 12.1 199 268-477 63-267 (290)
102 KOG1127 TPR repeat-containing 98.8 3.1E-05 6.7E-10 79.1 30.7 366 96-471 492-909 (1238)
103 KOG0985 Vesicle coat protein c 98.7 0.00063 1.4E-08 70.0 36.2 248 139-438 1056-1306(1666)
104 PLN02789 farnesyltranstransfer 98.7 3.3E-05 7.1E-10 72.5 26.1 203 250-458 51-267 (320)
105 KOG1125 TPR repeat-containing 98.7 2E-06 4.3E-11 82.5 18.0 219 248-473 297-525 (579)
106 KOG1128 Uncharacterized conser 98.7 1.5E-06 3.2E-11 85.6 17.4 188 274-473 427-614 (777)
107 COG5010 TadD Flp pilus assembl 98.7 1.2E-05 2.5E-10 70.0 20.9 159 310-472 70-228 (257)
108 PRK10370 formate-dependent nit 98.6 9.9E-06 2.1E-10 70.6 20.5 156 278-449 23-181 (198)
109 PLN02789 farnesyltranstransfer 98.6 0.00014 3E-09 68.3 29.2 116 270-388 141-267 (320)
110 KOG1128 Uncharacterized conser 98.6 3.6E-06 7.8E-11 83.0 18.9 229 169-421 401-633 (777)
111 KOG1127 TPR repeat-containing 98.6 0.00022 4.7E-09 73.2 31.1 180 288-471 800-992 (1238)
112 KOG1070 rRNA processing protei 98.6 6.9E-05 1.5E-09 79.3 28.3 207 165-409 1457-1667(1710)
113 TIGR03302 OM_YfiO outer membra 98.6 7.8E-06 1.7E-10 74.3 19.6 186 269-474 31-231 (235)
114 KOG1070 rRNA processing protei 98.6 6.2E-05 1.3E-09 79.6 27.7 234 201-468 1455-1693(1710)
115 KOG0985 Vesicle coat protein c 98.6 0.00015 3.1E-09 74.4 29.3 227 212-473 1056-1306(1666)
116 PRK15359 type III secretion sy 98.6 6.9E-06 1.5E-10 67.7 17.2 94 344-439 27-120 (144)
117 TIGR03302 OM_YfiO outer membra 98.6 1.9E-05 4.1E-10 71.7 21.9 172 249-439 46-231 (235)
118 PRK10370 formate-dependent nit 98.6 1.3E-05 2.7E-10 70.0 19.5 151 313-478 23-176 (198)
119 PF12854 PPR_1: PPR repeat 98.6 9.5E-08 2.1E-12 55.9 4.1 32 126-157 2-33 (34)
120 PF12854 PPR_1: PPR repeat 98.5 1.3E-07 2.8E-12 55.4 4.0 31 372-402 3-33 (34)
121 COG5010 TadD Flp pilus assembl 98.5 3.1E-05 6.8E-10 67.4 19.4 152 71-230 77-228 (257)
122 KOG3081 Vesicle coat complex C 98.5 5.5E-05 1.2E-09 65.8 20.7 171 258-439 95-270 (299)
123 PRK14720 transcript cleavage f 98.5 0.00012 2.5E-09 76.8 25.9 236 96-422 31-268 (906)
124 PRK15359 type III secretion sy 98.4 1.5E-05 3.3E-10 65.6 15.7 95 309-405 27-121 (144)
125 KOG3081 Vesicle coat complex C 98.4 0.00037 8E-09 60.8 24.0 144 250-404 122-270 (299)
126 TIGR02552 LcrH_SycD type III s 98.4 1.6E-05 3.4E-10 65.1 15.3 105 341-449 17-121 (135)
127 COG4783 Putative Zn-dependent 98.4 0.00015 3.2E-09 68.8 23.1 144 101-265 311-454 (484)
128 PRK15179 Vi polysaccharide bio 98.4 0.00015 3.2E-09 75.3 25.4 143 269-416 84-227 (694)
129 KOG3060 Uncharacterized conser 98.4 0.0002 4.3E-09 62.0 21.4 186 250-439 26-219 (289)
130 KOG3617 WD40 and TPR repeat-co 98.4 0.0041 8.8E-08 62.9 35.3 163 34-230 809-993 (1416)
131 KOG3060 Uncharacterized conser 98.3 0.00054 1.2E-08 59.4 22.7 187 181-370 27-220 (289)
132 PRK15179 Vi polysaccharide bio 98.3 0.00014 3E-09 75.5 23.0 148 302-453 82-229 (694)
133 PRK14720 transcript cleavage f 98.3 0.00029 6.2E-09 74.0 24.4 228 63-317 34-268 (906)
134 COG4783 Putative Zn-dependent 98.3 0.0014 3.1E-08 62.4 26.1 135 249-405 319-454 (484)
135 TIGR02552 LcrH_SycD type III s 98.2 8.7E-05 1.9E-09 60.7 15.4 96 308-405 19-114 (135)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.1E-05 2E-09 70.9 15.6 126 98-232 171-296 (395)
137 PF09976 TPR_21: Tetratricopep 98.1 0.00027 5.9E-09 58.4 15.9 126 98-230 14-144 (145)
138 PF09976 TPR_21: Tetratricopep 98.1 0.0004 8.7E-09 57.4 16.1 53 382-436 91-143 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00028 6.2E-09 67.6 16.1 117 349-472 177-294 (395)
140 KOG2053 Mitochondrial inherita 98.0 0.03 6.4E-07 57.7 40.9 221 40-268 24-258 (932)
141 KOG1130 Predicted G-alpha GTPa 98.0 0.00012 2.6E-09 67.7 11.7 131 308-438 197-342 (639)
142 KOG2053 Mitochondrial inherita 97.9 0.035 7.6E-07 57.2 43.7 386 37-438 55-534 (932)
143 KOG1914 mRNA cleavage and poly 97.9 0.024 5.1E-07 55.0 37.2 421 23-466 15-530 (656)
144 PF10037 MRP-S27: Mitochondria 97.9 0.00042 9.1E-09 66.8 15.4 121 269-389 64-186 (429)
145 KOG0553 TPR repeat-containing 97.9 0.00017 3.7E-09 64.2 11.7 97 351-451 91-187 (304)
146 TIGR00756 PPR pentatricopeptid 97.9 2.2E-05 4.8E-10 46.6 4.5 32 379-410 3-34 (35)
147 TIGR00756 PPR pentatricopeptid 97.9 2.2E-05 4.7E-10 46.6 4.4 33 133-165 2-34 (35)
148 cd00189 TPR Tetratricopeptide 97.9 0.00028 6.1E-09 53.1 11.8 90 347-438 6-95 (100)
149 PF10037 MRP-S27: Mitochondria 97.9 0.00027 5.8E-09 68.1 13.4 125 300-424 60-186 (429)
150 PLN03088 SGT1, suppressor of 97.9 0.00047 1E-08 66.3 15.2 96 349-448 10-105 (356)
151 PF13812 PPR_3: Pentatricopept 97.8 2.6E-05 5.7E-10 45.9 3.9 32 133-164 3-34 (34)
152 PF13812 PPR_3: Pentatricopept 97.8 3.5E-05 7.6E-10 45.4 4.4 28 379-406 4-31 (34)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00083 1.8E-08 53.3 13.8 98 343-440 4-105 (119)
154 cd00189 TPR Tetratricopeptide 97.8 0.00035 7.6E-09 52.6 11.1 97 378-476 2-98 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0012 2.6E-08 52.4 13.8 96 98-193 4-103 (119)
156 CHL00033 ycf3 photosystem I as 97.8 0.00045 9.7E-09 58.8 11.7 81 96-177 35-117 (168)
157 KOG0550 Molecular chaperone (D 97.8 0.0096 2.1E-07 55.6 20.5 273 104-405 57-350 (486)
158 PRK15363 pathogenicity island 97.7 0.0021 4.5E-08 52.3 14.2 95 343-439 37-131 (157)
159 PF08579 RPM2: Mitochondrial r 97.7 0.0006 1.3E-08 51.3 10.0 78 101-178 30-116 (120)
160 PRK15363 pathogenicity island 97.7 0.00083 1.8E-08 54.6 11.7 95 98-194 37-131 (157)
161 PRK02603 photosystem I assembl 97.7 0.0033 7.1E-08 53.7 16.0 89 95-184 34-124 (172)
162 PRK02603 photosystem I assembl 97.7 0.0036 7.8E-08 53.5 15.8 84 308-392 37-122 (172)
163 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.9E-08 49.5 10.5 27 360-386 88-114 (120)
164 PLN03088 SGT1, suppressor of 97.6 0.0023 4.9E-08 61.7 15.3 86 317-404 13-98 (356)
165 PF14938 SNAP: Soluble NSF att 97.6 0.027 5.8E-07 52.5 21.8 63 273-335 157-225 (282)
166 PF14938 SNAP: Soluble NSF att 97.6 0.029 6.3E-07 52.3 21.9 25 208-232 39-63 (282)
167 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.6E-08 54.7 13.1 26 343-368 74-99 (168)
168 PF12895 Apc3: Anaphase-promot 97.6 0.00018 3.9E-09 53.0 5.5 79 355-436 3-83 (84)
169 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.6E-09 53.2 5.3 47 110-156 3-50 (84)
170 PF05843 Suf: Suppressor of fo 97.5 0.002 4.3E-08 59.8 13.4 131 97-233 2-136 (280)
171 KOG1130 Predicted G-alpha GTPa 97.5 0.0023 5E-08 59.5 13.0 131 273-403 197-342 (639)
172 PRK10153 DNA-binding transcrip 97.5 0.02 4.4E-07 57.8 21.1 162 302-470 333-509 (517)
173 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.9E-09 41.7 3.4 29 98-126 2-30 (31)
174 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.5E-09 42.0 3.1 30 133-162 2-31 (31)
175 COG4700 Uncharacterized protei 97.5 0.033 7.2E-07 46.2 18.1 127 303-433 86-215 (251)
176 PRK10153 DNA-binding transcrip 97.5 0.0085 1.8E-07 60.4 18.1 142 335-479 331-486 (517)
177 PF12688 TPR_5: Tetratrico pep 97.5 0.0074 1.6E-07 47.3 13.9 93 101-193 6-102 (120)
178 PF05843 Suf: Suppressor of fo 97.5 0.0029 6.3E-08 58.7 13.5 143 307-454 2-148 (280)
179 PRK10866 outer membrane biogen 97.4 0.082 1.8E-06 47.8 23.1 58 276-333 180-239 (243)
180 PF06239 ECSIT: Evolutionarily 97.4 0.0039 8.4E-08 53.3 12.5 104 304-426 45-153 (228)
181 PRK10866 outer membrane biogen 97.4 0.06 1.3E-06 48.7 20.8 183 271-473 32-239 (243)
182 KOG0553 TPR repeat-containing 97.4 0.0025 5.5E-08 57.0 11.5 95 317-415 92-186 (304)
183 PF06239 ECSIT: Evolutionarily 97.4 0.0042 9.1E-08 53.1 12.0 88 94-181 45-153 (228)
184 KOG2280 Vacuolar assembly/sort 97.4 0.21 4.5E-06 50.7 25.3 108 343-469 686-793 (829)
185 COG4700 Uncharacterized protei 97.4 0.018 3.8E-07 47.8 15.0 126 129-256 87-213 (251)
186 COG4235 Cytochrome c biogenesi 97.3 0.016 3.4E-07 52.3 15.5 101 338-440 153-256 (287)
187 COG4235 Cytochrome c biogenesi 97.3 0.014 3.1E-07 52.6 14.8 111 364-477 145-258 (287)
188 PF13281 DUF4071: Domain of un 97.3 0.068 1.5E-06 50.7 19.9 84 58-141 139-227 (374)
189 PF12688 TPR_5: Tetratrico pep 97.3 0.023 5E-07 44.6 14.2 18 384-401 46-63 (120)
190 PF13414 TPR_11: TPR repeat; P 97.3 0.0012 2.6E-08 46.3 6.5 61 377-438 4-65 (69)
191 PF13414 TPR_11: TPR repeat; P 97.2 0.0013 2.9E-08 46.2 6.3 63 96-159 3-66 (69)
192 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.4E-08 45.1 6.6 58 102-160 3-60 (65)
193 PF13432 TPR_16: Tetratricopep 97.2 0.0017 3.7E-08 44.9 6.7 55 384-439 5-59 (65)
194 PF14559 TPR_19: Tetratricopep 97.1 0.0019 4.2E-08 45.2 6.4 50 389-439 4-53 (68)
195 PF14559 TPR_19: Tetratricopep 97.1 0.0021 4.6E-08 44.9 6.2 62 352-416 2-63 (68)
196 KOG2041 WD40 repeat protein [G 97.1 0.42 9E-06 48.2 26.5 323 94-455 690-1066(1189)
197 PF13525 YfiO: Outer membrane 97.0 0.16 3.4E-06 44.7 19.0 48 276-325 146-197 (203)
198 KOG2796 Uncharacterized conser 97.0 0.043 9.4E-07 48.2 14.6 129 275-404 181-314 (366)
199 KOG2280 Vacuolar assembly/sort 97.0 0.5 1.1E-05 48.1 26.2 88 101-190 442-531 (829)
200 KOG2796 Uncharacterized conser 97.0 0.24 5.2E-06 43.7 19.9 162 281-452 159-325 (366)
201 COG3898 Uncharacterized membra 97.0 0.34 7.4E-06 45.4 29.5 203 271-483 188-400 (531)
202 PF03704 BTAD: Bacterial trans 96.9 0.031 6.7E-07 46.2 12.9 71 379-450 65-140 (146)
203 PRK10803 tol-pal system protei 96.9 0.039 8.5E-07 50.3 14.3 101 132-233 144-246 (263)
204 PRK15331 chaperone protein Sic 96.9 0.098 2.1E-06 43.0 14.9 92 346-439 42-133 (165)
205 KOG1538 Uncharacterized conser 96.9 0.1 2.2E-06 51.8 17.5 36 226-261 622-657 (1081)
206 PF13525 YfiO: Outer membrane 96.9 0.26 5.6E-06 43.3 18.9 61 172-233 11-71 (203)
207 PRK10803 tol-pal system protei 96.8 0.038 8.2E-07 50.4 13.8 94 344-439 146-245 (263)
208 KOG0550 Molecular chaperone (D 96.8 0.5 1.1E-05 44.7 25.0 269 69-370 58-350 (486)
209 PF13371 TPR_9: Tetratricopept 96.8 0.0097 2.1E-07 42.2 7.7 54 385-439 4-57 (73)
210 PF13281 DUF4071: Domain of un 96.8 0.54 1.2E-05 44.8 24.0 82 95-176 140-227 (374)
211 PF04840 Vps16_C: Vps16, C-ter 96.7 0.55 1.2E-05 44.3 27.2 108 343-470 179-286 (319)
212 PF13371 TPR_9: Tetratricopept 96.7 0.008 1.7E-07 42.7 6.7 58 104-162 3-60 (73)
213 PF13424 TPR_12: Tetratricopep 96.5 0.0094 2E-07 43.0 6.3 65 167-232 6-74 (78)
214 PF13424 TPR_12: Tetratricopep 96.5 0.012 2.6E-07 42.4 6.8 61 378-438 7-73 (78)
215 PF04840 Vps16_C: Vps16, C-ter 96.5 0.81 1.7E-05 43.2 30.3 109 308-436 179-287 (319)
216 PF03704 BTAD: Bacterial trans 96.5 0.037 7.9E-07 45.7 10.3 72 343-415 64-140 (146)
217 PF07079 DUF1347: Protein of u 96.4 0.99 2.1E-05 43.4 36.2 73 71-143 90-179 (549)
218 PF12921 ATP13: Mitochondrial 96.3 0.088 1.9E-06 41.8 11.0 96 341-456 2-98 (126)
219 PRK15331 chaperone protein Sic 96.2 0.18 3.8E-06 41.6 12.4 92 101-194 42-133 (165)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.12 2.7E-06 49.8 12.7 63 305-369 74-140 (453)
221 PF12921 ATP13: Mitochondrial 96.0 0.16 3.4E-06 40.4 10.8 97 305-421 1-98 (126)
222 KOG2041 WD40 repeat protein [G 95.9 2.3 5E-05 43.2 24.0 151 278-439 930-1085(1189)
223 KOG0543 FKBP-type peptidyl-pro 95.9 0.15 3.3E-06 48.1 12.0 95 377-474 258-354 (397)
224 KOG4555 TPR repeat-containing 95.9 0.25 5.5E-06 38.5 10.9 93 141-234 53-145 (175)
225 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.18 3.8E-06 48.8 12.5 99 338-442 72-176 (453)
226 KOG0543 FKBP-type peptidyl-pro 95.8 0.22 4.8E-06 47.0 12.6 126 102-232 214-354 (397)
227 COG5107 RNA14 Pre-mRNA 3'-end 95.7 2.2 4.8E-05 41.0 33.5 128 342-473 398-529 (660)
228 COG3118 Thioredoxin domain-con 95.6 1.7 3.6E-05 39.6 17.1 121 106-232 144-264 (304)
229 COG0457 NrfG FOG: TPR repeat [ 95.6 1.5 3.3E-05 39.0 27.0 198 272-473 60-263 (291)
230 PF07079 DUF1347: Protein of u 95.6 2.4 5.2E-05 40.9 41.3 387 66-473 51-522 (549)
231 COG3898 Uncharacterized membra 95.6 2.2 4.7E-05 40.3 31.7 281 109-405 97-392 (531)
232 PF10300 DUF3808: Protein of u 95.6 1.1 2.3E-05 45.1 17.5 161 310-473 192-374 (468)
233 PF09205 DUF1955: Domain of un 95.5 0.94 2E-05 35.6 13.3 64 378-442 88-151 (161)
234 KOG1585 Protein required for f 95.4 1.7 3.7E-05 38.2 19.6 207 205-434 32-250 (308)
235 KOG3941 Intermediate in Toll s 95.3 0.18 4E-06 44.9 9.5 106 303-427 64-174 (406)
236 PF10300 DUF3808: Protein of u 95.2 1.7 3.7E-05 43.7 17.8 176 257-439 178-375 (468)
237 smart00299 CLH Clathrin heavy 95.1 1.5 3.3E-05 35.7 15.4 42 276-318 12-53 (140)
238 PF04053 Coatomer_WDAD: Coatom 95.0 1.1 2.5E-05 44.3 15.6 103 105-231 270-374 (443)
239 KOG1538 Uncharacterized conser 95.0 4.6 0.0001 40.8 21.9 56 270-334 746-801 (1081)
240 COG1729 Uncharacterized protei 95.0 0.88 1.9E-05 40.8 13.1 87 108-194 153-243 (262)
241 KOG3941 Intermediate in Toll s 94.9 0.25 5.5E-06 44.1 9.4 117 268-403 64-186 (406)
242 PF04184 ST7: ST7 protein; In 94.9 2.7 5.9E-05 41.2 16.9 103 376-478 259-378 (539)
243 PF13512 TPR_18: Tetratricopep 94.9 0.89 1.9E-05 36.6 11.7 68 59-126 9-77 (142)
244 PF13428 TPR_14: Tetratricopep 94.7 0.11 2.3E-06 32.4 5.1 39 98-137 3-41 (44)
245 KOG1941 Acetylcholine receptor 94.7 2.3 4.9E-05 39.8 15.0 131 274-404 125-274 (518)
246 PF04053 Coatomer_WDAD: Coatom 94.7 2.1 4.6E-05 42.5 16.3 155 175-365 270-426 (443)
247 KOG2610 Uncharacterized conser 94.6 1.3 2.7E-05 40.9 13.1 157 244-403 111-274 (491)
248 COG1729 Uncharacterized protei 94.6 0.78 1.7E-05 41.2 11.8 58 382-439 184-243 (262)
249 PF09205 DUF1955: Domain of un 94.6 1.8 3.9E-05 34.1 14.1 139 177-337 13-151 (161)
250 PRK11906 transcriptional regul 94.5 4.7 0.0001 39.4 17.7 145 321-471 273-432 (458)
251 KOG4555 TPR repeat-containing 94.5 0.67 1.5E-05 36.2 9.7 90 104-194 51-143 (175)
252 PRK11906 transcriptional regul 94.5 3.3 7.1E-05 40.5 16.4 117 76-194 274-400 (458)
253 COG4105 ComL DNA uptake lipopr 94.4 3.6 7.8E-05 36.7 21.3 173 57-230 31-230 (254)
254 KOG1941 Acetylcholine receptor 94.4 1.8 3.8E-05 40.4 13.7 18 99-116 46-63 (518)
255 PF13512 TPR_18: Tetratricopep 94.3 2.3 5E-05 34.3 12.9 75 173-248 17-91 (142)
256 PF13428 TPR_14: Tetratricopep 94.2 0.14 3E-06 31.9 4.8 38 133-171 3-40 (44)
257 COG4649 Uncharacterized protei 94.2 2.7 5.9E-05 34.9 17.4 132 63-194 61-195 (221)
258 KOG2610 Uncharacterized conser 94.1 3.3 7.2E-05 38.3 14.8 162 214-377 113-284 (491)
259 smart00299 CLH Clathrin heavy 93.9 2.3 4.9E-05 34.6 12.8 85 100-192 11-95 (140)
260 PF08631 SPO22: Meiosis protei 93.8 5.7 0.00012 36.9 27.1 132 177-335 4-150 (278)
261 PF10602 RPN7: 26S proteasome 93.6 1.5 3.3E-05 37.4 11.4 97 97-193 37-140 (177)
262 KOG1585 Protein required for f 93.2 5.6 0.00012 35.2 19.2 54 344-398 193-249 (308)
263 PF13929 mRNA_stabil: mRNA sta 93.0 5 0.00011 36.6 14.0 60 129-188 200-260 (292)
264 KOG1258 mRNA processing protei 92.8 12 0.00026 37.8 29.7 124 306-432 297-421 (577)
265 COG3629 DnrI DNA-binding trans 92.6 1.4 3.1E-05 40.2 10.2 73 99-172 156-233 (280)
266 COG3118 Thioredoxin domain-con 92.5 8.3 0.00018 35.3 18.3 143 279-425 142-286 (304)
267 KOG1258 mRNA processing protei 92.5 13 0.00028 37.5 36.6 416 24-460 41-489 (577)
268 COG3629 DnrI DNA-binding trans 92.3 2.1 4.5E-05 39.1 10.9 77 343-420 155-236 (280)
269 PF10602 RPN7: 26S proteasome 92.3 2.4 5.3E-05 36.1 10.8 97 377-473 37-140 (177)
270 PF13170 DUF4003: Protein of u 92.2 10 0.00022 35.5 20.8 27 147-173 78-104 (297)
271 PF08631 SPO22: Meiosis protei 92.2 9.7 0.00021 35.4 26.5 188 282-472 46-272 (278)
272 PF11207 DUF2989: Protein of u 92.2 1.9 4.1E-05 37.0 9.8 81 142-224 118-198 (203)
273 PF04184 ST7: ST7 protein; In 92.2 13 0.00028 36.7 21.3 60 310-369 263-323 (539)
274 COG5107 RNA14 Pre-mRNA 3'-end 92.2 12 0.00026 36.3 34.5 144 308-457 399-546 (660)
275 PF13176 TPR_7: Tetratricopept 92.0 0.41 8.8E-06 28.2 4.2 23 379-401 2-24 (36)
276 KOG2114 Vacuolar assembly/sort 92.0 5.8 0.00013 41.5 14.4 175 171-366 339-515 (933)
277 PF13176 TPR_7: Tetratricopept 91.9 0.44 9.5E-06 28.0 4.3 26 206-231 1-26 (36)
278 COG4649 Uncharacterized protei 91.9 6.5 0.00014 32.8 14.4 123 282-404 69-195 (221)
279 PRK15180 Vi polysaccharide bio 91.6 3.7 8.1E-05 39.9 12.0 133 351-487 299-432 (831)
280 PF13170 DUF4003: Protein of u 91.5 12 0.00026 35.0 21.7 24 359-382 200-223 (297)
281 PF00515 TPR_1: Tetratricopept 91.0 0.61 1.3E-05 26.8 4.2 27 413-439 3-29 (34)
282 PF13929 mRNA_stabil: mRNA sta 90.8 13 0.00028 34.1 15.6 125 242-366 134-263 (292)
283 PF07719 TPR_2: Tetratricopept 89.9 0.77 1.7E-05 26.2 4.1 26 414-439 4-29 (34)
284 COG4105 ComL DNA uptake lipopr 89.9 14 0.00031 33.1 22.6 174 280-473 43-231 (254)
285 PF13431 TPR_17: Tetratricopep 89.7 0.48 1E-05 27.5 2.9 20 411-430 13-32 (34)
286 KOG1550 Extracellular protein 89.6 28 0.00061 36.1 19.9 180 253-442 229-428 (552)
287 PF13431 TPR_17: Tetratricopep 89.3 0.48 1E-05 27.4 2.7 20 446-465 13-32 (34)
288 COG0457 NrfG FOG: TPR repeat [ 89.2 15 0.00032 32.3 30.9 65 166-232 59-123 (291)
289 KOG0276 Vesicle coat complex C 88.9 7.2 0.00016 39.2 11.7 131 205-365 615-745 (794)
290 PF06552 TOM20_plant: Plant sp 88.8 2.3 5E-05 35.7 7.2 60 394-457 53-124 (186)
291 KOG4234 TPR repeat-containing 88.8 4.8 0.0001 34.4 9.1 96 347-447 101-202 (271)
292 KOG2114 Vacuolar assembly/sort 88.7 36 0.00077 36.1 26.7 144 101-262 373-516 (933)
293 KOG4570 Uncharacterized conser 88.6 8.3 0.00018 35.5 11.0 48 356-403 115-162 (418)
294 KOG1920 IkappaB kinase complex 88.5 45 0.00096 36.9 23.8 79 348-437 972-1052(1265)
295 PF00515 TPR_1: Tetratricopept 88.4 1.4 3.1E-05 25.2 4.4 27 378-404 3-29 (34)
296 KOG4234 TPR repeat-containing 88.4 6.3 0.00014 33.7 9.5 91 314-405 103-197 (271)
297 PF07035 Mic1: Colon cancer-as 88.2 14 0.00031 30.9 14.3 132 327-472 15-146 (167)
298 KOG4648 Uncharacterized conser 87.6 4 8.6E-05 37.9 8.6 54 314-368 105-158 (536)
299 PF02259 FAT: FAT domain; Int 87.6 28 0.0006 33.6 24.7 65 270-334 145-212 (352)
300 KOG1920 IkappaB kinase complex 87.3 52 0.0011 36.4 27.7 143 43-193 659-819 (1265)
301 cd00923 Cyt_c_Oxidase_Va Cytoc 87.3 5.6 0.00012 29.4 7.5 39 400-438 31-69 (103)
302 PF02259 FAT: FAT domain; Int 87.3 29 0.00063 33.4 22.9 66 304-369 144-212 (352)
303 COG4455 ImpE Protein of avirul 87.1 4.9 0.00011 34.8 8.3 56 136-192 6-61 (273)
304 PF13374 TPR_10: Tetratricopep 86.2 1.6 3.4E-05 26.4 3.9 20 172-191 8-27 (42)
305 COG4785 NlpI Lipoprotein NlpI, 86.0 23 0.00049 30.9 16.8 83 180-266 79-163 (297)
306 PF13374 TPR_10: Tetratricopep 86.0 2.3 4.9E-05 25.6 4.6 29 204-232 2-30 (42)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 85.9 8.2 0.00018 28.6 7.8 62 357-419 23-84 (103)
308 KOG4570 Uncharacterized conser 85.9 22 0.00048 32.9 12.1 99 94-194 62-163 (418)
309 KOG1586 Protein required for f 85.7 25 0.00054 31.1 18.7 62 383-446 161-228 (288)
310 KOG1550 Extracellular protein 85.6 49 0.0011 34.4 26.2 77 356-440 454-538 (552)
311 PF07719 TPR_2: Tetratricopept 85.5 1.9 4.2E-05 24.5 3.9 26 99-124 4-29 (34)
312 PF02284 COX5A: Cytochrome c o 84.7 9.8 0.00021 28.5 7.8 46 394-439 28-73 (108)
313 PF11207 DUF2989: Protein of u 84.2 18 0.00039 31.2 10.4 77 109-186 119-198 (203)
314 PF09613 HrpB1_HrpK: Bacterial 83.9 23 0.00051 29.3 13.3 67 72-142 22-88 (160)
315 PF02284 COX5A: Cytochrome c o 83.9 16 0.00035 27.4 8.8 60 359-419 28-87 (108)
316 KOG4648 Uncharacterized conser 82.9 9.9 0.00021 35.4 8.8 93 278-375 104-197 (536)
317 PF13181 TPR_8: Tetratricopept 82.9 2.2 4.7E-05 24.3 3.3 26 414-439 4-29 (34)
318 PRK09687 putative lyase; Provi 82.8 41 0.00088 31.3 29.3 138 304-457 140-278 (280)
319 KOG4279 Serine/threonine prote 82.8 47 0.001 34.8 14.1 103 57-159 198-315 (1226)
320 PF04097 Nic96: Nup93/Nic96; 82.4 70 0.0015 33.7 20.5 69 98-167 113-188 (613)
321 KOG0276 Vesicle coat complex C 81.5 23 0.00051 35.8 11.3 99 317-436 648-746 (794)
322 COG4785 NlpI Lipoprotein NlpI, 80.1 40 0.00087 29.5 15.6 63 131-194 99-161 (297)
323 PF00637 Clathrin: Region in C 80.1 1 2.2E-05 36.9 1.6 86 382-474 13-98 (143)
324 COG4455 ImpE Protein of avirul 80.0 15 0.00033 32.0 8.4 74 310-384 5-80 (273)
325 PF00637 Clathrin: Region in C 79.8 0.77 1.7E-05 37.6 0.8 54 102-155 13-66 (143)
326 PF09477 Type_III_YscG: Bacter 79.6 25 0.00053 26.7 8.6 85 69-161 15-99 (116)
327 PF13181 TPR_8: Tetratricopept 78.9 6.8 0.00015 22.2 4.5 27 206-232 3-29 (34)
328 PF06552 TOM20_plant: Plant sp 78.8 23 0.00049 30.0 8.9 76 358-442 52-138 (186)
329 PF07721 TPR_4: Tetratricopept 77.2 3.4 7.3E-05 22.0 2.6 21 100-120 5-25 (26)
330 KOG1464 COP9 signalosome, subu 77.0 57 0.0012 29.5 19.2 87 275-362 149-252 (440)
331 PF09613 HrpB1_HrpK: Bacterial 75.9 45 0.00097 27.7 14.5 53 351-405 20-73 (160)
332 PF13174 TPR_6: Tetratricopept 75.4 4.2 9E-05 22.8 2.9 25 101-125 5-29 (33)
333 PF07035 Mic1: Colon cancer-as 75.1 49 0.0011 27.8 15.4 32 258-289 16-47 (167)
334 PF07163 Pex26: Pex26 protein; 75.0 47 0.001 30.3 10.3 89 136-227 88-181 (309)
335 KOG4642 Chaperone-dependent E3 74.3 64 0.0014 28.8 11.3 113 354-470 23-141 (284)
336 KOG4077 Cytochrome c oxidase, 74.2 22 0.00048 27.9 7.0 43 397-439 70-112 (149)
337 PF13174 TPR_6: Tetratricopept 73.6 6.5 0.00014 21.9 3.4 21 383-403 7-27 (33)
338 PRK09687 putative lyase; Provi 73.2 80 0.0017 29.4 27.6 77 96-178 37-117 (280)
339 COG2976 Uncharacterized protei 72.4 63 0.0014 27.8 15.8 89 350-440 98-188 (207)
340 TIGR03504 FimV_Cterm FimV C-te 72.4 8.6 0.00019 23.8 3.8 23 417-439 5-27 (44)
341 PF07163 Pex26: Pex26 protein; 72.0 71 0.0015 29.3 10.7 88 277-364 89-181 (309)
342 TIGR03504 FimV_Cterm FimV C-te 71.6 9.1 0.0002 23.7 3.7 26 101-126 4-29 (44)
343 PF10345 Cohesin_load: Cohesin 71.2 1.4E+02 0.0031 31.5 34.5 154 317-471 372-559 (608)
344 PF10579 Rapsyn_N: Rapsyn N-te 70.3 16 0.00035 25.9 5.1 47 423-469 18-66 (80)
345 KOG0991 Replication factor C, 69.6 82 0.0018 28.0 12.7 35 374-409 237-271 (333)
346 TIGR02508 type_III_yscG type I 69.2 46 0.001 25.0 8.2 53 383-441 46-98 (115)
347 KOG2659 LisH motif-containing 69.1 69 0.0015 28.3 9.8 100 91-192 21-129 (228)
348 PF10579 Rapsyn_N: Rapsyn N-te 68.9 17 0.00036 25.9 5.0 46 388-433 18-65 (80)
349 KOG2471 TPR repeat-containing 68.9 1.3E+02 0.0028 30.0 14.4 106 315-422 249-380 (696)
350 TIGR02508 type_III_yscG type I 68.8 47 0.001 25.0 9.5 91 70-169 15-105 (115)
351 COG1747 Uncharacterized N-term 68.7 1.3E+02 0.0029 30.1 22.7 181 269-457 64-250 (711)
352 TIGR02561 HrpB1_HrpK type III 68.2 66 0.0014 26.4 12.0 51 73-125 23-73 (153)
353 COG2909 MalT ATP-dependent tra 68.0 1.8E+02 0.004 31.4 26.4 279 78-366 349-684 (894)
354 COG5159 RPN6 26S proteasome re 67.9 1E+02 0.0022 28.4 11.4 55 415-469 129-188 (421)
355 PF09986 DUF2225: Uncharacteri 67.9 62 0.0013 28.6 9.7 63 413-475 120-194 (214)
356 smart00028 TPR Tetratricopepti 67.5 11 0.00025 20.0 3.7 25 414-438 4-28 (34)
357 KOG1586 Protein required for f 67.5 92 0.002 27.8 19.2 33 209-241 159-191 (288)
358 PRK10941 hypothetical protein; 67.4 99 0.0021 28.5 11.2 77 134-213 184-260 (269)
359 PF12862 Apc5: Anaphase-promot 67.3 34 0.00074 25.4 7.0 56 177-232 9-69 (94)
360 PRK11619 lytic murein transgly 66.4 1.8E+02 0.004 30.8 32.1 50 422-472 323-372 (644)
361 KOG4507 Uncharacterized conser 65.6 39 0.00084 34.3 8.5 101 282-384 618-718 (886)
362 COG3947 Response regulator con 65.3 1.2E+02 0.0025 28.1 16.3 56 381-437 284-339 (361)
363 PRK10941 hypothetical protein; 65.2 93 0.002 28.7 10.6 76 99-175 184-260 (269)
364 PF14853 Fis1_TPR_C: Fis1 C-te 63.1 39 0.00085 22.0 5.8 31 418-450 8-38 (53)
365 KOG4077 Cytochrome c oxidase, 63.0 61 0.0013 25.6 7.4 46 360-405 68-113 (149)
366 COG1747 Uncharacterized N-term 62.1 1.8E+02 0.0039 29.3 25.7 98 92-194 62-159 (711)
367 KOG3807 Predicted membrane pro 61.5 90 0.002 29.2 9.5 58 172-231 281-338 (556)
368 KOG2422 Uncharacterized conser 61.4 2E+02 0.0043 29.5 19.7 164 69-232 247-447 (665)
369 PF09670 Cas_Cas02710: CRISPR- 61.2 1.7E+02 0.0037 28.7 12.7 58 102-160 137-198 (379)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 60.8 83 0.0018 25.0 8.8 43 114-156 81-124 (126)
371 KOG2066 Vacuolar assembly/sort 59.7 2.4E+02 0.0053 30.0 27.6 154 70-232 366-533 (846)
372 PF08424 NRDE-2: NRDE-2, neces 59.3 1.7E+02 0.0036 27.9 18.6 122 112-235 47-185 (321)
373 PF11663 Toxin_YhaV: Toxin wit 59.1 11 0.00024 29.9 2.9 35 105-141 104-138 (140)
374 KOG2396 HAT (Half-A-TPR) repea 58.8 2E+02 0.0044 28.9 34.9 239 220-473 298-557 (568)
375 PF09670 Cas_Cas02710: CRISPR- 58.5 1.7E+02 0.0038 28.6 11.8 52 317-369 142-197 (379)
376 KOG4507 Uncharacterized conser 58.1 40 0.00087 34.1 7.2 89 351-440 617-705 (886)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 57.7 89 0.0019 24.8 8.1 43 394-436 81-124 (126)
378 PF00244 14-3-3: 14-3-3 protei 57.6 1.5E+02 0.0032 26.8 10.3 57 276-332 6-63 (236)
379 PF11848 DUF3368: Domain of un 56.8 48 0.001 21.0 5.1 31 108-138 14-44 (48)
380 PF11846 DUF3366: Domain of un 56.4 54 0.0012 28.3 7.3 33 407-439 140-172 (193)
381 TIGR02561 HrpB1_HrpK type III 56.2 1.1E+02 0.0024 25.1 12.6 51 353-405 22-73 (153)
382 COG3947 Response regulator con 56.1 1.7E+02 0.0037 27.1 18.4 71 343-414 281-356 (361)
383 PF10345 Cohesin_load: Cohesin 55.9 2.7E+02 0.0059 29.4 34.1 49 352-400 372-428 (608)
384 PF14689 SPOB_a: Sensor_kinase 55.5 36 0.00077 23.0 4.7 27 412-438 24-50 (62)
385 PF11848 DUF3368: Domain of un 55.3 50 0.0011 20.9 5.0 31 423-453 14-44 (48)
386 PF13762 MNE1: Mitochondrial s 55.1 1.2E+02 0.0025 24.9 10.7 80 344-423 42-127 (145)
387 PF14689 SPOB_a: Sensor_kinase 53.6 37 0.0008 22.9 4.5 22 346-367 28-49 (62)
388 KOG0376 Serine-threonine phosp 53.5 31 0.00068 33.9 5.6 99 316-419 14-113 (476)
389 PF10366 Vps39_1: Vacuolar sor 53.5 79 0.0017 24.3 6.9 26 379-404 42-67 (108)
390 PRK11619 lytic murein transgly 53.2 3.1E+02 0.0067 29.2 40.0 268 81-368 84-373 (644)
391 PF11846 DUF3366: Domain of un 53.0 67 0.0015 27.8 7.4 42 117-160 132-173 (193)
392 COG2909 MalT ATP-dependent tra 52.8 3.4E+02 0.0073 29.6 28.6 220 214-436 425-684 (894)
393 PF04762 IKI3: IKI3 family; I 52.6 3.3E+02 0.0072 30.5 13.9 30 271-300 812-843 (928)
394 KOG2908 26S proteasome regulat 52.3 1.9E+02 0.0041 27.4 10.0 52 388-439 87-143 (380)
395 PRK07003 DNA polymerase III su 50.5 96 0.0021 33.3 8.9 83 78-163 182-277 (830)
396 cd08819 CARD_MDA5_2 Caspase ac 50.3 99 0.0021 22.6 7.7 35 108-147 48-82 (88)
397 KOG1464 COP9 signalosome, subu 50.3 2E+02 0.0044 26.2 18.8 173 197-369 19-219 (440)
398 KOG4521 Nuclear pore complex, 49.2 4.4E+02 0.0095 29.8 14.3 60 168-227 985-1044(1480)
399 KOG1308 Hsp70-interacting prot 48.9 6.8 0.00015 36.5 0.5 116 351-471 124-240 (377)
400 COG0735 Fur Fe2+/Zn2+ uptake r 48.3 1.1E+02 0.0025 24.9 7.5 60 120-180 10-69 (145)
401 KOG2297 Predicted translation 48.0 2.4E+02 0.0051 26.4 14.6 67 250-326 269-341 (412)
402 cd00280 TRFH Telomeric Repeat 48.0 1.4E+02 0.003 25.6 7.7 20 420-439 120-139 (200)
403 PF09477 Type_III_YscG: Bacter 47.5 1.3E+02 0.0028 23.1 8.5 79 356-441 21-99 (116)
404 KOG2908 26S proteasome regulat 47.4 2.6E+02 0.0056 26.6 10.1 57 176-232 85-143 (380)
405 KOG2471 TPR repeat-containing 47.2 3.1E+02 0.0068 27.6 17.9 107 350-458 249-381 (696)
406 cd00280 TRFH Telomeric Repeat 46.9 1.7E+02 0.0036 25.1 8.0 21 349-369 119-139 (200)
407 COG0735 Fur Fe2+/Zn2+ uptake r 46.9 1.3E+02 0.0029 24.5 7.7 63 397-460 7-69 (145)
408 KOG2066 Vacuolar assembly/sort 46.6 4E+02 0.0086 28.6 28.1 168 102-298 362-532 (846)
409 PF13762 MNE1: Mitochondrial s 46.1 1.7E+02 0.0036 24.0 12.0 79 310-388 43-127 (145)
410 COG2976 Uncharacterized protei 46.0 2E+02 0.0043 24.9 19.0 90 314-405 97-188 (207)
411 PF07575 Nucleopor_Nup85: Nup8 45.7 3.8E+02 0.0082 28.1 16.5 32 458-489 507-538 (566)
412 PF06957 COPI_C: Coatomer (COP 45.7 1.7E+02 0.0038 28.9 9.3 22 276-297 123-144 (422)
413 PF11817 Foie-gras_1: Foie gra 44.9 1.1E+02 0.0024 27.8 7.6 59 134-192 181-244 (247)
414 PF09986 DUF2225: Uncharacteri 44.0 2.3E+02 0.005 25.1 11.4 27 415-441 169-195 (214)
415 PF11663 Toxin_YhaV: Toxin wit 43.9 30 0.00064 27.6 3.2 29 424-454 108-136 (140)
416 PF00244 14-3-3: 14-3-3 protei 43.3 2.4E+02 0.0052 25.4 9.4 52 71-123 12-64 (236)
417 COG5187 RPN7 26S proteasome re 43.2 2.7E+02 0.006 25.8 14.3 131 237-369 79-220 (412)
418 PHA02875 ankyrin repeat protei 43.2 1.8E+02 0.004 28.7 9.8 22 213-238 8-29 (413)
419 KOG1839 Uncharacterized protei 42.3 4.2E+02 0.0091 30.3 12.3 157 280-436 941-1124(1236)
420 KOG4642 Chaperone-dependent E3 42.2 2.6E+02 0.0056 25.2 10.9 83 281-367 20-104 (284)
421 PRK13342 recombination factor 42.1 3.6E+02 0.0078 26.8 20.3 118 183-316 154-275 (413)
422 KOG1308 Hsp70-interacting prot 41.2 18 0.00039 33.9 1.9 119 316-439 124-243 (377)
423 KOG3364 Membrane protein invol 40.5 2E+02 0.0043 23.3 9.0 66 129-194 30-99 (149)
424 cd08819 CARD_MDA5_2 Caspase ac 40.5 1.5E+02 0.0032 21.8 6.6 66 115-186 21-86 (88)
425 PF08424 NRDE-2: NRDE-2, neces 40.4 3.3E+02 0.0072 25.9 18.8 118 323-442 48-185 (321)
426 PRK10564 maltose regulon perip 40.4 61 0.0013 30.0 5.1 31 344-374 260-290 (303)
427 COG5191 Uncharacterized conser 40.2 1.3E+02 0.0028 28.1 6.9 70 93-163 104-174 (435)
428 PF12862 Apc5: Anaphase-promot 40.0 1.5E+02 0.0033 21.9 7.2 23 172-194 47-69 (94)
429 COG2256 MGS1 ATPase related to 40.0 3.7E+02 0.0081 26.4 14.7 38 202-239 244-284 (436)
430 PRK10564 maltose regulon perip 40.0 69 0.0015 29.7 5.3 37 133-169 259-295 (303)
431 PF15297 CKAP2_C: Cytoskeleton 39.8 3.5E+02 0.0075 25.9 9.9 64 392-457 119-186 (353)
432 KOG2063 Vacuolar assembly/sort 39.3 5.7E+02 0.012 28.3 19.3 26 99-124 507-532 (877)
433 COG0790 FOG: TPR repeat, SEL1 39.3 3.2E+02 0.0069 25.4 25.4 116 286-407 92-222 (292)
434 PRK14958 DNA polymerase III su 39.0 2.9E+02 0.0062 28.4 10.2 38 86-125 190-227 (509)
435 KOG0376 Serine-threonine phosp 38.9 73 0.0016 31.6 5.6 109 277-390 10-119 (476)
436 COG0790 FOG: TPR repeat, SEL1 38.9 3.2E+02 0.007 25.3 24.1 114 252-371 93-221 (292)
437 KOG4567 GTPase-activating prot 38.8 3.4E+02 0.0073 25.5 10.1 72 116-192 263-344 (370)
438 KOG0128 RNA-binding protein SA 38.1 5.5E+02 0.012 27.8 31.4 368 97-471 114-559 (881)
439 PRK08691 DNA polymerase III su 37.8 5.4E+02 0.012 27.6 12.4 84 78-164 182-278 (709)
440 smart00386 HAT HAT (Half-A-TPR 37.5 70 0.0015 17.2 3.9 13 392-404 3-15 (33)
441 KOG0686 COP9 signalosome, subu 37.1 4.1E+02 0.009 26.0 12.9 60 99-158 153-214 (466)
442 PF10366 Vps39_1: Vacuolar sor 35.8 2E+02 0.0044 22.1 7.3 26 134-159 42-67 (108)
443 PF11817 Foie-gras_1: Foie gra 35.2 2.3E+02 0.005 25.7 8.2 62 169-230 181-244 (247)
444 TIGR02710 CRISPR-associated pr 35.2 4.4E+02 0.0095 25.8 11.9 55 102-156 136-196 (380)
445 KOG0890 Protein kinase of the 35.2 9.8E+02 0.021 29.8 25.7 304 75-405 1398-1731(2382)
446 COG5108 RPO41 Mitochondrial DN 34.6 2.5E+02 0.0054 29.4 8.5 47 101-147 33-81 (1117)
447 KOG4567 GTPase-activating prot 34.5 4E+02 0.0086 25.1 9.6 70 361-435 263-342 (370)
448 PRK12323 DNA polymerase III su 34.2 5E+02 0.011 27.7 10.9 82 79-163 188-282 (700)
449 KOG3364 Membrane protein invol 33.8 2.6E+02 0.0056 22.7 10.2 20 420-439 80-99 (149)
450 PF13877 RPAP3_C: Potential Mo 33.4 1.3E+02 0.0028 22.3 5.2 23 98-120 67-89 (94)
451 PF15297 CKAP2_C: Cytoskeleton 33.0 2.6E+02 0.0057 26.7 8.0 63 113-177 120-186 (353)
452 PF09454 Vps23_core: Vps23 cor 32.9 1.2E+02 0.0025 20.8 4.3 44 377-421 9-52 (65)
453 PF09868 DUF2095: Uncharacteri 32.5 1.8E+02 0.0039 22.4 5.5 26 101-126 66-91 (128)
454 KOG0890 Protein kinase of the 32.3 1.1E+03 0.024 29.5 28.4 314 101-440 1388-1731(2382)
455 KOG1839 Uncharacterized protei 31.9 8.5E+02 0.018 28.1 13.2 131 102-232 938-1085(1236)
456 KOG2063 Vacuolar assembly/sort 31.9 7.4E+02 0.016 27.4 16.6 166 273-438 506-711 (877)
457 PRK11639 zinc uptake transcrip 31.5 3.2E+02 0.0069 23.1 7.8 60 402-462 17-76 (169)
458 PF11768 DUF3312: Protein of u 31.5 5.9E+02 0.013 26.2 11.4 22 136-157 413-434 (545)
459 COG5108 RPO41 Mitochondrial DN 31.3 2.9E+02 0.0062 29.0 8.4 118 346-473 33-160 (1117)
460 KOG0292 Vesicle coat complex C 31.2 2.9E+02 0.0063 30.0 8.7 95 388-482 1003-1120(1202)
461 PRK11639 zinc uptake transcrip 31.1 2.9E+02 0.0063 23.3 7.6 41 140-180 34-74 (169)
462 PF12926 MOZART2: Mitotic-spin 31.0 2.1E+02 0.0046 20.9 8.0 41 432-472 29-69 (88)
463 cd07153 Fur_like Ferric uptake 30.7 1.6E+02 0.0034 22.7 5.6 36 110-145 14-49 (116)
464 PRK09462 fur ferric uptake reg 30.5 3E+02 0.0065 22.5 7.8 60 401-461 7-67 (148)
465 PF10475 DUF2450: Protein of u 30.5 4.6E+02 0.0099 24.5 11.2 119 100-230 102-223 (291)
466 COG4259 Uncharacterized protei 30.3 2.4E+02 0.0052 21.3 6.4 22 415-436 76-97 (121)
467 PRK09462 fur ferric uptake reg 30.1 3.1E+02 0.0067 22.4 7.6 35 146-180 32-66 (148)
468 PF09454 Vps23_core: Vps23 cor 28.6 1.1E+02 0.0025 20.9 3.7 47 130-177 7-53 (65)
469 KOG0551 Hsp90 co-chaperone CNS 28.3 4.6E+02 0.0099 25.0 8.5 97 341-439 81-181 (390)
470 PF14853 Fis1_TPR_C: Fis1 C-te 27.9 1.8E+02 0.0038 18.9 5.7 34 276-311 6-39 (53)
471 PF12926 MOZART2: Mitotic-spin 27.8 2.5E+02 0.0053 20.6 7.7 64 374-439 8-71 (88)
472 PF01475 FUR: Ferric uptake re 27.8 1.6E+02 0.0034 23.0 5.1 44 102-145 13-56 (120)
473 cd07153 Fur_like Ferric uptake 27.7 1.5E+02 0.0033 22.8 5.1 46 137-182 6-51 (116)
474 PF11838 ERAP1_C: ERAP1-like C 27.7 5.2E+02 0.011 24.3 19.7 81 147-233 146-230 (324)
475 PF09868 DUF2095: Uncharacteri 27.5 2.4E+02 0.0053 21.8 5.5 37 417-454 67-103 (128)
476 PRK09857 putative transposase; 26.7 5.4E+02 0.012 24.1 9.8 65 380-445 210-274 (292)
477 PF02847 MA3: MA3 domain; Int 26.6 2.6E+02 0.0056 21.3 6.2 19 313-331 9-27 (113)
478 KOG2659 LisH motif-containing 26.5 4.7E+02 0.01 23.4 9.6 99 128-231 23-130 (228)
479 PF02184 HAT: HAT (Half-A-TPR) 26.5 1.3E+02 0.0029 17.1 3.3 22 427-450 3-24 (32)
480 PRK14700 recombination factor 26.3 5.5E+02 0.012 24.1 16.3 170 111-299 40-229 (300)
481 PRK15180 Vi polysaccharide bio 26.2 6.9E+02 0.015 25.2 28.3 125 65-194 294-419 (831)
482 PF02847 MA3: MA3 domain; Int 26.1 3E+02 0.0065 21.0 6.9 23 275-297 6-28 (113)
483 KOG2034 Vacuolar sorting prote 26.0 9.1E+02 0.02 26.5 26.8 51 101-157 363-415 (911)
484 KOG1166 Mitotic checkpoint ser 26.0 3.8E+02 0.0083 29.9 9.0 71 388-458 90-161 (974)
485 KOG2396 HAT (Half-A-TPR) repea 25.7 7.2E+02 0.016 25.3 22.5 99 303-404 456-558 (568)
486 PRK09857 putative transposase; 25.5 5.7E+02 0.012 24.0 9.1 65 345-410 210-274 (292)
487 COG4003 Uncharacterized protei 25.0 2.7E+02 0.0057 20.0 5.2 26 101-126 36-61 (98)
488 PF04090 RNA_pol_I_TF: RNA pol 25.0 3.8E+02 0.0081 23.4 7.1 59 98-157 43-102 (199)
489 smart00777 Mad3_BUB1_I Mad3/BU 24.5 3.6E+02 0.0079 21.4 9.6 41 430-470 82-123 (125)
490 KOG0403 Neoplastic transformat 24.4 7.2E+02 0.016 24.8 15.9 77 413-491 347-427 (645)
491 PF03745 DUF309: Domain of unk 24.3 2.3E+02 0.005 19.1 6.1 32 143-174 11-42 (62)
492 PF13934 ELYS: Nuclear pore co 24.1 5.2E+02 0.011 23.1 12.1 94 318-422 90-183 (226)
493 KOG0686 COP9 signalosome, subu 24.1 7E+02 0.015 24.6 14.2 161 271-439 150-332 (466)
494 PHA02537 M terminase endonucle 24.0 5.3E+02 0.012 23.1 14.8 30 98-127 85-114 (230)
495 PHA02875 ankyrin repeat protei 24.0 3.4E+02 0.0074 26.8 8.0 198 257-472 16-225 (413)
496 PF01475 FUR: Ferric uptake re 23.4 1.7E+02 0.0036 22.8 4.6 46 415-460 11-56 (120)
497 PF10255 Paf67: RNA polymerase 23.3 4.3E+02 0.0093 26.1 8.0 100 304-403 70-191 (404)
498 KOG0551 Hsp90 co-chaperone CNS 22.8 6.8E+02 0.015 24.0 10.6 96 307-403 82-180 (390)
499 PF07575 Nucleopor_Nup85: Nup8 22.3 2.9E+02 0.0062 28.9 7.2 30 163-192 402-431 (566)
500 smart00777 Mad3_BUB1_I Mad3/BU 22.3 4E+02 0.0088 21.2 9.5 74 358-436 50-124 (125)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-67 Score=560.91 Aligned_cols=503 Identities=18% Similarity=0.238 Sum_probs=464.8
Q ss_pred hhhhhccchhchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhc
Q 008708 14 RKVEVFKDAADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQ 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~ 89 (557)
.+..+|+ .++.+|+++||.+++++.+.+ +|+.+|.. +...+..|+..++.++. .+...++.+.+.+++..+.+.
T Consensus 240 ~A~~lf~-~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~-M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 240 SARLVFD-RMPRRDCISWNAMISGYFENGECLEGLELFFT-MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHh-cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 7888994 458999999999999998766 77888884 46677888888887776 467889999999999999988
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 008708 90 SWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 169 (557)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 169 (557)
+ +.++..+|+.|+.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 318 g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 318 G-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred C-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 6 789999999999999999999999999999974 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF- 248 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~- 248 (557)
+.++.+|++.|+++.|.++++.+. +.+..|+..+++.|+++|++.|++++|.++|++|.+ ++..+|+.++.+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAE---RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999998 467899999999999999999999999999999875 588999999986
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 249 --ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 249 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
.++.++|..+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+.+.|+.++..++++|+.+|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 5889999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR-VN 405 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~ 405 (557)
.+|+.+ .||..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999987 579999999999999999999999999999999999999999999999999999999999999999 68
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccce
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLS 485 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 485 (557)
|+.|+..+|++++.+|++.|++++|.+++++|. +.||..+|.+|+.+|..+|+.+.++...+++.+..+......
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y-- 694 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY-- 694 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH--
Confidence 999999999999999999999999999999994 799999999999999999999999999888876555322222
Q ss_pred eeccCCCCCCCCCCCCcccccccCCCCCC-----CCCCccchhhhhhccCCCcc-----eeeecCCcccccccccccccc
Q 008708 486 ISVDEEDDDDDDDEDDDDNIYHDGDGDGD-----GDDNEDDAEETIACSGKEDE-----LIFFNGDHQRSQEGLHTLQTV 555 (557)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~i~~~-----~~~~~~~~~~~~~~~~~l~~~ 555 (557)
.+ +.|+|...|+|++ +.|++++++|.|||||||++ |..+|.+||++.+||..|+.+
T Consensus 695 ~l--------------l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 695 IL--------------LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred HH--------------HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 11 6799999999999 58999999999999999997 888999999999999998865
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-66 Score=540.19 Aligned_cols=498 Identities=19% Similarity=0.269 Sum_probs=454.6
Q ss_pred hchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhh
Q 008708 23 ADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMD 98 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (557)
....+.++|+.++.++...+ +|+.+|..+.......|+..++..+. .+...++.+.+.+++..+.+.+ +.++..+
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~ 160 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYM 160 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHH
Confidence 34456779999999998654 78888885443344456666666665 4677788999999999999886 7789999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
|+.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999974 79999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHH
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEV 255 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a 255 (557)
.|..+.+.+++..+. +.++.||..+++.|+++|++.|++++|.++|+.|.. ++.++||.++.+ .|+.++|
T Consensus 237 ~~~~~~~~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 237 LGSARAGQQLHCCVL---KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred CCcHHHHHHHHHHHH---HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHH
Confidence 999999999999998 467889999999999999999999999999999964 589999999987 5899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 256 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 335 (557)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (557)
.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCcCHHHH
Q 008708 336 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPNQTIF 414 (557)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~ 414 (557)
.||..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 4799999999999999999999999999999999999999999999999999999999999999986 6999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccceeeccCCCCC
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDD 494 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (557)
++++++|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.++.. ...+..
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~~-------- 533 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVV-------- 533 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchHH--------
Confidence 99999999999999999999876 478999999999999999999999999999987665532 222222
Q ss_pred CCCCCCCcccccccCCCCCC-----CCCCccchhhhhhccCCCcc-----eeeecCCcccccccccccccc
Q 008708 495 DDDDEDDDDNIYHDGDGDGD-----GDDNEDDAEETIACSGKEDE-----LIFFNGDHQRSQEGLHTLQTV 555 (557)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~i~~~-----~~~~~~~~~~~~~~~~~l~~~ 555 (557)
+.++|...|+|++ +.|+++++++.|||||||++ |+.+|.+||.+.+||..|+++
T Consensus 534 -------L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 534 -------LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 6789999999998 58889999999999999997 888899999999999988765
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-60 Score=497.36 Aligned_cols=470 Identities=18% Similarity=0.316 Sum_probs=424.4
Q ss_pred hhhhhhccchhchhcchhHHHHH-----HHHHhh---ChHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHH
Q 008708 13 RRKVEVFKDAADEAGKKNWRRLM-----NQIEEV---GSAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVL 83 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~ 83 (557)
..++.+|+. ++.++++.|+.+. ..+... .+|..+++.+ . .|+..++..+. .+...++++.|.++|
T Consensus 387 ~eAl~Lfd~-M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 387 KDCIDLLED-MEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-R----NPTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred HHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-C----CCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 478888844 4677777666544 445543 3666666633 2 26666666655 577889999999999
Q ss_pred HHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008708 84 EWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 163 (557)
+.+.+.+ +.++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 461 ~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 461 RLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 9999876 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008708 164 PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN 243 (557)
Q Consensus 164 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 243 (557)
||..+|+.++.+|++.|++++|.++|++|... ..++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999742 25688999999999999999999999999999999999999999999
Q ss_pred HHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008708 244 SLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 320 (557)
Q Consensus 244 ~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 320 (557)
.++.+ .|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99986 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 321 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
++++|.++|++|...++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++.
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHh----c-------------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGK----N-------------------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||..||..++.++.
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999876432 1 124679999999999999999999999998888
Q ss_pred hcCCHHHHHHHHHhcCCCCCCCCcccceeeccC
Q 008708 458 TADERNEANELLGNFNHPNNEPGINGLSISVDE 490 (557)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (557)
..+..+.+..+++.+...+..|....++.+++.
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 999999999999988877777777777777664
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-59 Score=494.98 Aligned_cols=457 Identities=18% Similarity=0.284 Sum_probs=420.7
Q ss_pred hchhcchhHHHHHHHHH---hhChHHHHHHHhhhcCCCC-ChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHh
Q 008708 23 ADEAGKKNWRRLMNQIE---EVGSAVAVLRSERTRGQPL-PKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEM 97 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (557)
...+|+..+..+++.+. +.++|+.+|+.| ...+.. ++..++..+. .+...+..+.|.++++.+.. ++..
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M-~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~ 438 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDM-EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLS 438 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHH
Confidence 34566778888888885 455899999955 444544 4444555454 35667888999999887753 7899
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHhcc---cCCH
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE--RGVQQSTVTYNSLMSF---ETNY 252 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~---~~~~ 252 (557)
+.|++++|.++|+.|. ..++.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+ .|++
T Consensus 519 k~G~~eeAl~lf~~M~---~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMR---SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HCcCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999998 467899999999999999999999999999999986 6789999999999986 5889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 332 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 332 (557)
++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 008708 333 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 412 (557)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 412 (557)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----c-------------------CCHHHHHHHH
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT----A-------------------DERNEANELL 469 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~ 469 (557)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..++
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999876542 1 2346799999
Q ss_pred HhcCCCCCCCCcccceeec
Q 008708 470 GNFNHPNNEPGINGLSISV 488 (557)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~ 488 (557)
++|.+.+..|+..++..++
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHH
Confidence 9999999999988877665
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-57 Score=484.81 Aligned_cols=454 Identities=18% Similarity=0.245 Sum_probs=337.6
Q ss_pred hhhhhccchhchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHHH-hhhccchHHHHHHHHHHHhc
Q 008708 14 RKVEVFKDAADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQ 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~ 89 (557)
.+..+| +.+++||+++||.+++++.+.+ +|+.+|+. +...+..|+..++.++.+ +...+++..+.+++..+.+.
T Consensus 139 ~A~~~f-~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~-M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 139 HAWYVF-GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred HHHHHH-hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 678889 4458899999999999998765 78888885 455688888888877765 56677888899999998887
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 008708 90 SWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 169 (557)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 169 (557)
+ +.++..+|+.|+.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|...|+.||..||
T Consensus 217 g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 217 G-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred C-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 6 678889999999999999999999999999874 68889999999999999999999999999998999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF- 248 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~- 248 (557)
+.++.+|++.|+.+.|.+++..+. +.++.||..+|+.|+.+|++.|++++|.++|++|.. |+..+|+.++.+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVV---KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH---HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999988887 457888888888888888888888888888888863 677888888876
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 249 --ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 249 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 477888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|..+.+.+++..+.+.|
T Consensus 445 ~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 88888763 4667777777777777777777777777764 355555544443333333222222222222222221
Q ss_pred C------------------------------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 407 I------------------------------KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 407 ~------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
+ .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 1 3344455555555555555555555555555555555555555555555
Q ss_pred hhcCCHHHHHHHHHhcC-CCCCCCCccccee
Q 008708 457 KTADERNEANELLGNFN-HPNNEPGINGLSI 486 (557)
Q Consensus 457 ~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ 486 (557)
.+.|++++|.++++.|. ..+..|...++..
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 55555555555555554 3444444444443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-53 Score=447.02 Aligned_cols=449 Identities=15% Similarity=0.241 Sum_probs=410.3
Q ss_pred hhhhhccchh----chhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHH
Q 008708 14 RKVEVFKDAA----DEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEW 85 (557)
Q Consensus 14 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~ 85 (557)
.++.+|..+. ..+|..+|+.++.++.+.+ .+.+++. .+...+..|+..++..+. .+.+.|+.+.|.++|+.
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~-~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW-HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 6777886552 2578899999999998766 3456665 455566777777666665 56788999999999998
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 008708 86 LRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 165 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 165 (557)
+.+ ++..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|..||
T Consensus 184 m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 184 MPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred CCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 853 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 166 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 245 (557)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 245 (557)
..+|+.++.+|++.|++++|.++|+.|. .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999984 468999999999999999999999999999999999999999999
Q ss_pred hcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008708 246 MSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMV 322 (557)
Q Consensus 246 l~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 322 (557)
+.+ .+++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCH
Confidence 987 47899999999999999999999999999999999999999999999996 47899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 323 DQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 323 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (557)
++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 68999999999999999999999999999887
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC--C
Q 008708 402 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNN--E 478 (557)
Q Consensus 402 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 478 (557)
| ++.|+..+|++++.+|...|+++.|..+++++.+ +.|+ ..+|..+++.|.+.|++++|.++++.|.+.+. .
T Consensus 488 ~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 488 A---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred C---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 6 5789999999999999999999999999999976 4564 57999999999999999999999999987664 4
Q ss_pred CCcccc
Q 008708 479 PGINGL 484 (557)
Q Consensus 479 ~~~~~~ 484 (557)
|+..++
T Consensus 563 ~g~s~i 568 (697)
T PLN03081 563 PACTWI 568 (697)
T ss_pred CCeeEE
Confidence 665543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=5e-25 Score=242.21 Aligned_cols=387 Identities=15% Similarity=0.124 Sum_probs=180.2
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
+...++++.|.++++.+.+..+ .+...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+.|++++
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 3344555555555555544331 233444445555555555555555555554432 2244455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 229 (557)
|..+++++...++ .+...+..++..+...|++++|..+++.+++. .+.+..+|..++.+|...|++++|...|++
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA----APDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544322 23344444445555555555555555554421 133344455555555555555555555555
Q ss_pred HHHcCCC--------------------------------C-CHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHH
Q 008708 230 MAERGVQ--------------------------------Q-STVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVS 273 (557)
Q Consensus 230 ~~~~~~~--------------------------------~-~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~ 273 (557)
+.+.... | +...+..+.. ..+++++|..+++.+.... +.+...
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 4433211 1 1222222211 1344444444444444432 123334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
+..+...+...|++++|...|+++...+ |+..++..++.++.+.|++++|...++++.+.. +.+...++.+...|..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444445555555555555444432 222344444444555555555555555444432 2344444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
.|++++|...|+++.+.. +++..+++.++..+...|+ .+|+.+++++.+.. +.+..++..+..++...|++++|..+
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554443 3444445555555555555 44555555544431 22334444455555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 434 YKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 434 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
++++++.+ +.++.++..++.++.+.|+.++|.++++++
T Consensus 860 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 860 LRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555533 224445555555555555555555555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=3.5e-24 Score=235.53 Aligned_cols=441 Identities=14% Similarity=0.134 Sum_probs=308.7
Q ss_pred hhhhhccch--hchhcchhHHHHHHHHH---hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHh
Q 008708 14 RKVEVFKDA--ADEAGKKNWRRLMNQIE---EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRI 88 (557)
Q Consensus 14 ~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 88 (557)
.+...|..+ ..+.+...|..+...+. +.++|+..+... ....+............+...++++.|.++++.+..
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA-AQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-HhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 556666543 23445566666555444 445677777743 333333334444445566778999999999998887
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 008708 89 QSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALT 168 (557)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 168 (557)
.. +.++..+..+..+|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++...++. +..+
T Consensus 460 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 535 (899)
T TIGR02917 460 KQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRA 535 (899)
T ss_pred hC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHH
Confidence 64 3567889999999999999999999999998864 456778899999999999999999999999887544 7888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
+..+...+.+.|+.++|...+.++... .+.+...+..++..|.+.|++++|..+++.+.+.. +.+...|..+...
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 999999999999999999999999753 24566788889999999999999999999998754 3345556555443
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 249 ---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQA 325 (557)
Q Consensus 249 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (557)
.+++++|...|+.+.+..+ .+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 5889999999998887643 356678888888888889999988888887653 34566777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 326 RTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..+++.+.... +.+...+..+...+...|++++|...|+.+...+ |+..++..++.++.+.|++++|.+.++++.+.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777776554 3455566666666666677777777666666543 33345555555566666666666666555543
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
. +.+...+..+...|...|++++|..+|+++.+.. ++++..+..+...+...|+ .+|..+++++
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 2 3345555555555555566666666655555432 3334444444444444444 4444444443
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-21 Score=181.37 Aligned_cols=370 Identities=14% Similarity=0.135 Sum_probs=307.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY-QIIL 173 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~ll 173 (557)
...+|..+.+.+...|++.+|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 35678889999999999999999999999875 336889999999999999999999999998874 4554433 3455
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHhcccCC
Q 008708 174 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY--NSLMSFETN 251 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~~ 251 (557)
..+...|++++|...|.++++.. +-=..+|+.|...+-.+|+...|+..|++..+..+.--...+ ..+.+..+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC----CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 56667899999999999998642 222467899999999999999999999999876433222233 335566788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQARTVFK 330 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 330 (557)
+++|...|.......+. ....+..+...|...|.++.|+..|++.++. .|+ ...|+.|..++-..|++.+|...++
T Consensus 268 ~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999888775322 4677888999999999999999999999885 444 5689999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 008708 331 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 410 (557)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 410 (557)
+.+... +....+.+.|...|...|.++.|..+|....+-. +--...++.|...|-++|++++|+..|++.+. +.|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 998763 4456788999999999999999999999988753 33456789999999999999999999999987 5777
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCC
Q 008708 411 -QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 411 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (557)
...|+.+...|-..|+.+.|++.+.+++. +.|.. ..++.|.+.+...|+..+|+..++...+.++.-.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 68899999999999999999999999987 56765 6889999999999999999999999886666433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=6e-21 Score=188.22 Aligned_cols=310 Identities=16% Similarity=0.145 Sum_probs=239.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILKLF 176 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~ 176 (557)
......+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+......++ ..++..+...|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 334556778899999999999999875 44677899999999999999999999999987543222 25678888999
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 256 (557)
...|++++|..+|+++++. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 118 ~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------- 177 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------- 177 (389)
T ss_pred HHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------
Confidence 9999999999999999742 24567889999999999999999999999887753221100
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
.....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+|+++...+
T Consensus 178 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 178 ------------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred ------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 011235567778888999999999999988753 3345677778888888999999999998888653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
......+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 2222456778888888888888888888888775 456666678888888888888888888888764 578778887
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH
Q 008708 417 IMDAYGK---NKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 417 l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7776654 457888888888888766666665
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.3e-20 Score=184.12 Aligned_cols=299 Identities=15% Similarity=0.132 Sum_probs=242.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH
Q 008708 137 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK 216 (557)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (557)
....+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.++............++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999998754 36678888999999999999999999998752110000113567888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008708 217 AGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEE 296 (557)
Q Consensus 217 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 296 (557)
.|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.
T Consensus 120 ~g~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE---------------------------------GDFAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred CCCHHHHHHHHHHHHcC---------------------------------CcchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99999999999888764 123567888999999999999999999999
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 297 MLDAGVRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 372 (557)
Q Consensus 297 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (557)
+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 987653332 1245677788899999999999999998754 34567888899999999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 373 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
.....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+ ..|+...+..+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHH
Confidence 223467889999999999999999999999875 56777778899999999999999999999988 46888888888
Q ss_pred HHHHhh---cCCHHHHHHHHHhcCC
Q 008708 453 LSLAKT---ADERNEANELLGNFNH 474 (557)
Q Consensus 453 ~~~~~~---~g~~~~a~~~~~~~~~ 474 (557)
+..+.. .|+.+++..+++++.+
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHH
Confidence 876654 5688999988887764
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=3.3e-18 Score=189.21 Aligned_cols=361 Identities=14% Similarity=0.060 Sum_probs=261.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHH------------
Q 008708 103 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTY------------ 169 (557)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~------------ 169 (557)
...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..|++..+..+... ...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 456778899999999999998864 44788899999999999999999999999887654322 1111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---- 245 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---- 245 (557)
......+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|++.|+++.+..... ...+..+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~ 429 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 122446778899999999999998642 4556778889999999999999999999988754321 1111111
Q ss_pred -----------------------------------------hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 246 -----------------------------------------MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 246 -----------------------------------------l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
....+++++|.+.|++..+..+. +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 01247788888888888876433 566777888888999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----------------------------
Q 008708 285 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----------------------------- 335 (557)
Q Consensus 285 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------- 335 (557)
|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999998887643 223333333333333444444444444332110
Q ss_pred ----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 336 ----------RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 336 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|...|++++|.+.++.+.+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 123455566778888889999999999999988874 667888889999999999999999999988764
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF--PP---DQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
. +.+...+..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|...+++..
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 33466777788888899999999999999876321 12 12355666788899999999999998865
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=9.6e-19 Score=180.94 Aligned_cols=330 Identities=9% Similarity=0.006 Sum_probs=235.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
...++..+.+.|++++|..+++...... +.+...+..++.++...|++++|+..++++....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445566666777777777777776653 334555666666666677777777777777765433 55666667777777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HhcccCCHHHHHH
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS-LMSFETNYKEVSK 257 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~a~~ 257 (557)
.|++++|...+++++.. .+.+...+..++..+...|++++|...++.+......+....++. .+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLA----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777642 134455666677777777777777777776655433332222221 1223567777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHH
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ----ARTVFKCMR 333 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~ 333 (557)
.++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 77776665433444555566778888999999999999988764 4567778888889999999885 788899888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-H
Q 008708 334 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ-T 412 (557)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~ 412 (557)
+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...|+++.+. .|+. .
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 754 4467788889999999999999999999988864 556677888889999999999999999998875 3443 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.+..+..++...|++++|...|+++.+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344456778899999999999999887
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=5.7e-18 Score=175.89 Aligned_cols=391 Identities=13% Similarity=0.060 Sum_probs=268.3
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
+...++++.|.+.|+.+.+.. |++..|..+..+|.+.|++++|++.++...+.. +.+..+|..+..+|...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 455677888888888777654 456677788888888888888888888877764 3356677778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC----------------------------C
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL----------------------------K 201 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------------------~ 201 (557)
|+..|......+...+... ..++..+... .+.......++...... .
T Consensus 213 A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQS-AQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHhCCCccHHH-HHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 8777766544322212111 1111111110 11111111111100000 0
Q ss_pred CCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHH
Q 008708 202 PDQ-KMFHMMIYM---YKKAGGYEKARKLFALMAERG-VQQST-VTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVV 272 (557)
Q Consensus 202 ~~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~~~~-~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~ 272 (557)
+.. ..+..+... ....+++++|...|+...+.+ ..|+. ..++.+-. ..|++++|...++......+. ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 000 000111110 122368999999999998765 22332 23333222 368999999999999886422 466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
.|..+...+...|++++|+..|+++++.. +.+..+|..+...+...|++++|...|++..... +.+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 88888999999999999999999998764 4567888899999999999999999999998764 446777888889999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHHhcCC
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ------TIFTTIMDAYGKNKD 426 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~ 426 (557)
+.|++++|+..|++..... +.+...++.+..++...|++++|.+.|++..+.....+. ..++..+..+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999988763 556788999999999999999999999998875211111 112222233445699
Q ss_pred hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 427 FDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
+++|..++++.++. .|+. ..+..+...+...|++++|...+++..+.
T Consensus 524 ~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999998874 4544 56888899999999999999999887644
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1.4e-17 Score=184.27 Aligned_cols=420 Identities=12% Similarity=0.042 Sum_probs=295.6
Q ss_pred HHhhChHHHHHHHhhhcCCCCChHHHHHHHHH-hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 008708 38 IEEVGSAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAE 116 (557)
Q Consensus 38 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (557)
..+.++|+..++.. ....+.+.......... ....++++.|.+.++.+.+..+ -+...+..+...+...|++++|+
T Consensus 125 ~g~~~eA~~~~~~~-l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 125 TGRTEEALASYDKL-FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred CCCHHHHHHHHHHH-ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHH
Confidence 34566888888853 33333333322222222 2345789999999999988863 45677889999999999999999
Q ss_pred HHHHHHHhCCC------------------CCC-HHHH----------------------------------HHHHHHHHh
Q 008708 117 KVLSFMNKKGY------------------APS-VVSH----------------------------------TALMEAYGR 143 (557)
Q Consensus 117 ~~~~~~~~~g~------------------~~~-~~~~----------------------------------~~li~~~~~ 143 (557)
+.|+++..... .+. ...+ ......+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99998765320 000 0001 012345667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHH------------HHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM------------FHMMI 211 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~l~ 211 (557)
.|++++|+..|++.++..+. +..++..+..++.+.|++++|+..|+++++.... .+.... .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~--~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPH--SSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ccchhHHHHHHHhhhHHHHHHHH
Confidence 89999999999999886543 7888899999999999999999999999864321 111111 12235
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHH------------
Q 008708 212 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYAL------------ 276 (557)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 276 (557)
..+.+.|++++|+..|+++...... +...+.. +....|++++|++.|++..+..+. +...+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHH
Confidence 5678899999999999999987432 2222222 233468999999999998875432 2323222
Q ss_pred ------------------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 277 ------------------------------LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 277 ------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
+...+...|++++|+..|++.++.. +.+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2334556788899999999888763 335667788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH--------------------------------------------HcCCHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYV--------------------------------------------NASDMEGAEK 362 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~--------------------------------------------~~g~~~~A~~ 362 (557)
..++++.+.. +.++..+..+...+. ..|+.++|..
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999887643 223333333333333 3444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 363 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
+++ ..+++...+..+...+.+.|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++.+.+.
T Consensus 595 ~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 595 LLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred HHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 443 124566677788999999999999999999999863 456888999999999999999999999988863
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 443 PP-DQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 443 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
.| +...+..+..++...|++++|.++++++...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 44 4566777888899999999999999998754
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=4.4e-18 Score=179.87 Aligned_cols=406 Identities=12% Similarity=0.085 Sum_probs=265.3
Q ss_pred CCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 55 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 134 (557)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 134 (557)
..+..+..+.--+.-+...|+.+.|.+++..+.... +.....+..+...+.+.|++++|.++|++..+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 345555555555555556677778887777776532 2445567778888888888888888888877663 3456677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 008708 135 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 214 (557)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (557)
..++..+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++++.. +.+...+..++.++
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l 160 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA----PQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 77777888888888888888888776333 455 7777777888888888888888887532 34555666677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHhcc--------cCCH---HHHHHHHHHHHHC-CCCCCHH-HH-
Q 008708 215 KKAGGYEKARKLFALMAERGVQQST------VTYNSLMSF--------ETNY---KEVSKIYDQMQRA-GLQPDVV-SY- 274 (557)
Q Consensus 215 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~--------~~~~---~~a~~~~~~~~~~-~~~~~~~-~~- 274 (557)
...|..+.|+..++.... .|+. ......+.. .+++ ++|.+.++.+.+. ...|+.. .+
T Consensus 161 ~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 777888888877765543 1211 001111110 1123 5667777777653 1222211 11
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 008708 275 ---ALLINAYGKARREEEALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP---DICSYTTM 347 (557)
Q Consensus 275 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 347 (557)
...+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|..+|+++.+..... .......+
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 11133445668888888888888776422 222 22224667888888888888888876543111 13445566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-----------VPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 6677888888888888888776420 122 2345567777788888888888888887652 455777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPN 476 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (557)
+..++..+...|++++|++.+++.++ +.|+ ...+...+..+...|++++|+.+++++.+..
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 78888888888888888888888877 3454 4566666677888888888888887776433
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2.1e-18 Score=162.66 Aligned_cols=367 Identities=14% Similarity=0.152 Sum_probs=302.3
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcC
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVS-HTALMEAYGRGG 145 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g 145 (557)
..-++..|++..|+.+++.+.+..+ .....|..+..++...|+.+.|.+.|...++.+ |+... ...+...+-..|
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhc
Confidence 3446777899999999999988763 457789999999999999999999999999874 55443 444555666689
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 008708 146 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYKKAGGYEKAR 224 (557)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 224 (557)
+.++|...|.+.++..+. =...|+.|...+-.+|+.-.|++.|+++++. .|+ ...|..|...|...+.++.|.
T Consensus 199 rl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-----dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-----DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred ccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC-----CCcchHHHhhHHHHHHHHhcchHHH
Confidence 999999999998886442 4567889999999999999999999999853 344 468999999999999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 225 KLFALMAERGVQQST-VTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
..|...... +|+. +.+..+-.. .|..+-|+..|++.....+. -...|+.|..++-..|+..+|.+.|.+.+..
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999988764 3443 233333322 58899999999999986432 3678999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 008708 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN-VITY 379 (557)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 379 (557)
. +......+.|...|...|.+++|..+|....+-. +.-...++.|...|-++|++++|+..|++.+.. .|+ ...|
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~ 425 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADAL 425 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHH
Confidence 3 3446688999999999999999999999988642 223467899999999999999999999999875 555 5789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLS 454 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~ 454 (557)
+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|...|..+|+..+|++-++..++ ++||. ..+-.++-
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLH 498 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHH
Confidence 99999999999999999999999974 565 67899999999999999999999999998 67775 44555544
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=2.9e-17 Score=173.67 Aligned_cols=418 Identities=13% Similarity=0.077 Sum_probs=314.6
Q ss_pred hhchhcchhHHHHHHHHHhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHH
Q 008708 22 AADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLM 101 (557)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 101 (557)
...++=+--|.+|..-.++.++|+.++... ....+.+..........+...++++.|.++++.+.+..+ .++..+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~-~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRY-RVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 345666778999999888999999888843 323455555555566667888999999999999887753 45677789
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
++.++...|++++|...++++.+.. +.+.. +..+..++...|++++|+..++++.+..+. +...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998873 44666 889999999999999999999999997554 66666778888889999
Q ss_pred HHHHHHHHHHhHhccCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH--
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQ------KMFHMMIYMYK-----KAGGY---EKARKLFALMAER-GVQQSTV-TYN-- 243 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~-- 243 (557)
.+.|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~------~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 166 SAPALGAIDDANL------TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred hHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 9999999987742 2221 11222233222 22334 7788889888854 2222221 111
Q ss_pred -----HHhcccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 008708 244 -----SLMSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLD 314 (557)
Q Consensus 244 -----~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~ 314 (557)
..+...+++++|...|+.+.+.+.+ |+. ....+...|...|++++|+.+|+++.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1223458899999999999987633 332 22235778999999999999999987643111 1345666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 315 AFAISGMVDQARTVFKCMRRDRC-----------SPD---ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 380 (557)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (557)
++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... |.+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 88999999999999999986531 123 2355677889999999999999999998874 77788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
.++..+...|++++|++.+++..+.. +.+...+...+..+.+.|++++|..+++++++ ..|+......+-...
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999999999999853 33467777888889999999999999999998 467666554444433
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.2e-17 Score=168.12 Aligned_cols=362 Identities=10% Similarity=0.012 Sum_probs=276.8
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008708 64 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143 (557)
Q Consensus 64 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 143 (557)
.-....+...|+++.|+.+++.+....+ -+......++.+....|++++|...|+++.... |.+...+..+...+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3344556677899999999998888763 345566777788888999999999999999875 4467889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 223 (557)
.|++++|+..++++....+. +...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCHHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999886433 67788889999999999999999999886432 2333344344 347889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 008708 224 RKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE----ALAVFEE 296 (557)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~ 296 (557)
...++.+.+....++...+.. .+...|++++|...++......+ .+...+..+...+...|++++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999887643333333322 22347999999999999998753 367788889999999999985 8999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008708 297 MLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 376 (557)
Q Consensus 297 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (557)
+.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...|+++...+ +.+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~ 352 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTS 352 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch
Confidence 98763 4467789999999999999999999999998764 4456778888999999999999999999998764 2233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF----TTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..+..+..++...|++++|...|+++.+....-....| ..+-.++...+..++......++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 44555678899999999999999999875211112233 333344444555554445555553
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=9.9e-17 Score=166.65 Aligned_cols=368 Identities=14% Similarity=0.061 Sum_probs=271.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
+......|.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.+++.++..+. +..++..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 457888999999999999999999876 578889999999999999999999999999887543 67788889999999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------------
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER------------------------- 233 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------- 233 (557)
.|++++|+..|..+...+ +. +......++..+........+...++.-...
T Consensus 207 lg~~~eA~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIID--GF--RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhC--CC--ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999999887775421 11 1111111111111110111111111100000
Q ss_pred --CCCCCH-HH-HHHH---h--cccCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 234 --GVQQST-VT-YNSL---M--SFETNYKEVSKIYDQMQRAG-LQP-DVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 234 --~~~~~~-~~-~~~l---l--~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
...+.. .. ...- + ...+++++|.+.|+.....+ ..| ....+..+...+...|++++|+..|++.++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 000000 00 0000 0 11257889999999998764 223 45678888889999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
+.....|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..... +.+...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 3346688889999999999999999999998764 4467889999999999999999999999999875 5677888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KA-------KNILLS 454 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~-------~~~l~~ 454 (557)
..++.+.|++++|+..|++..+. .+.+...|..+..++...|++++|+..|++.++. .|+. .. +...+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHH
Confidence 99999999999999999999875 2445889999999999999999999999999873 3321 11 111222
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 455 LAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
.+...|++++|..++++....++..
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3344699999999999987665433
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.2e-14 Score=151.16 Aligned_cols=435 Identities=12% Similarity=0.111 Sum_probs=303.9
Q ss_pred hHHHHHHHHH--hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 008708 30 NWRRLMNQIE--EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYG 107 (557)
Q Consensus 30 ~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 107 (557)
.+...+.... ++..|+..|+ ......|.....+...+.-+...|+.+.|+.+++...... +........+...|.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~-qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQ-EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHH
Confidence 3444444333 3346777777 3445555544344444444556688888888888877222 233444445566888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 187 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 187 (557)
..|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 8899999999999988875 335677778888888889999999988888765 3444555445555555666666888
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH------HHHHhcc--------cCC--
Q 008708 188 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT------YNSLMSF--------ETN-- 251 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~ll~~--------~~~-- 251 (557)
.++++++.. +.+...+..+..++.+.|-...|.++..+-... ..+.... ....+.. ..+
T Consensus 191 ~~ekll~~~----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 191 ASSEAVRLA----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 888888532 456677778888888888888888776553321 1111100 1111110 112
Q ss_pred -HHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 252 -YKEVSKIYDQMQRA-GLQPDV-----VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ 324 (557)
Q Consensus 252 -~~~a~~~~~~~~~~-~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (557)
.+.++.-++.+... +..|.. ....-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+..++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555555542 222321 22234566788999999999999999988876667788999999999999999
Q ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------CCCH-HHHHHHHHH
Q 008708 325 ARTVFKCMRRDR-----CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-------------VPNV-ITYGTLIKG 385 (557)
Q Consensus 325 A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~l~~~ 385 (557)
|..+++.+.... .+++......|..+|...+++++|..+++.+.+... .||- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999987653 123444467889999999999999999999987311 1222 234556777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNE 464 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 464 (557)
+...|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+.. +.|+. .+....+.++...|++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHH
Confidence 889999999999999998764 66899999999999999999999999987776 45654 567778888999999999
Q ss_pred HHHHHHhcCCCCCC
Q 008708 465 ANELLGNFNHPNNE 478 (557)
Q Consensus 465 a~~~~~~~~~~~~~ 478 (557)
|..+++.+....++
T Consensus 503 A~~~~~~l~~~~Pe 516 (822)
T PRK14574 503 MELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999877654443
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=2.6e-14 Score=151.62 Aligned_cols=220 Identities=11% Similarity=-0.017 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
++..+|...+....... |+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566777666666543 45444444455556889999999999887654 455555667777888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 409 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 409 (557)
++..+.. +.+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++++|...|++..+.. +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 9888764 333334444444555669999999999998876 4678889999999999999999999999998863 44
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 410 NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 410 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+...+..+..++...|++++|+..+++.++.. |-+...+..+..++...|++++|...+++..+..+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 57788888889999999999999999998842 345678889999999999999999999998755543
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.3e-15 Score=149.67 Aligned_cols=412 Identities=13% Similarity=0.121 Sum_probs=305.6
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 62 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY 141 (557)
Q Consensus 62 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 141 (557)
.++-....+...|+++.|...|....+...-. ....+.-|..+|.+.|+.+.|...|+.+.... +.+..+...|...|
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHH
Confidence 34444455677788999988888777665211 13345578889999999999999999888763 44567777777777
Q ss_pred HhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc-cCCCCCCCHHHHHHHHHHHHH
Q 008708 142 GRGG----RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKK 216 (557)
Q Consensus 142 ~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 216 (557)
...+ ..+.|..++.+..+.- +.|...|..+...+-.. +.-.++.+|..+++. ...+..+.....|.+...+..
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 7765 5577777777776653 34777777777666544 433446666655521 112234667889999999999
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCCH-------HHHHH--HhcccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 008708 217 AGGYEKARKLFALMAER---GVQQST-------VTYNS--LMSFETNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGK 283 (557)
Q Consensus 217 ~g~~~~A~~~~~~~~~~---~~~~~~-------~~~~~--ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 283 (557)
.|++++|...|...... ...++. ..||. +....++.+.|.+.|..+.+.. |. +..|.-++.....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHh
Confidence 99999999999998865 122232 24554 2334688999999999999863 33 3445555544455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc--------
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNA-------- 354 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-------- 354 (557)
.+...+|..+++...... ..++..++.+...+.+...+..|..-|..+.+. ...+|+.+.-.|.+.|...
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 678899999999988753 556777777888899999999999988777654 2236777777777766532
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 355 ----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 355 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+..++|+++|.+.+... |.|...-|.++-.++..|++.+|..+|.+..+.. .-...+|-.+..+|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 56788999999998876 7788999999999999999999999999999864 33567899999999999999999
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcc
Q 008708 431 VVWYKEMESCGF-PPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGIN 482 (557)
Q Consensus 431 ~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 482 (557)
+++|+...+.-. .-+..+...|.+++.+.|.+.+|.+.+....+..+....-
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 999998876433 3466789999999999999999999998877666654443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=7.3e-14 Score=148.29 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...|+++... +|+...+..+..+
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 3344444444444 5666777766666654 355544444455556889999999999887654 4455556677788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+.+.|++++|...++...+.. +++...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999988764 444444444555555679999999999999875 56788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 431 VVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 431 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
...+++.++.. +.+...+..+..++...|+.++|...+++..+..+..
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999843 3355677888889999999999999999987665543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.2e-13 Score=143.72 Aligned_cols=411 Identities=12% Similarity=0.065 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 008708 30 NWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQ 109 (557)
Q Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (557)
.|-.+....++..+|+..++... ...+.+..........+...++++.|.++++.+.+..+ -++..+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhc
Confidence 33344444456667888887543 33344444444444567778999999999999998874 4567778889999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 110 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 189 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 189 (557)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..+. +...+..+..++.+.|-...|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999887 466666655555555567776799999999997544 7778888899999999999999887
Q ss_pred HHhHhccCCCCCCCHHHH--HHHHHHHH---------HcCC---HHHHHHHHHHHHHc-CCCCC-HHHHH-------HHh
Q 008708 190 MTLLDEEKSPLKPDQKMF--HMMIYMYK---------KAGG---YEKARKLFALMAER-GVQQS-TVTYN-------SLM 246 (557)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~g~---~~~A~~~~~~~~~~-~~~~~-~~~~~-------~ll 246 (557)
.+-. .-+.+....+ ...+.-.. ...+ .+.|+.-++.+... +..|. ...|. .++
T Consensus 227 ~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 227 KENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 6642 1222222111 00111111 1122 34455566665542 22232 22222 123
Q ss_pred cccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC
Q 008708 247 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG-----VRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~ 321 (557)
...++..++++.|+.+...+.+....+-..+..+|...+++++|..+|..+.... ..++......|..+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 3478999999999999998866566788899999999999999999999997643 12344446789999999999
Q ss_pred HHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 322 VDQARTVFKCMRRDRC-----------SPD--I-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 322 ~~~A~~~~~~~~~~~~-----------~~~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
+++|..+++.+.+... .|+ - ..+..++..+...|+..+|++.++++.... |-|......+.+.+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999999987321 122 2 335566778899999999999999998875 889999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
..|.+.+|.+.++.+.... +-+..+....+.++...|++++|..+.+.+.+ ..|+......|-.
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred hcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 9999999999997776542 44567777888899999999999999999988 4676655444443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.5e-13 Score=122.43 Aligned_cols=426 Identities=13% Similarity=0.119 Sum_probs=222.0
Q ss_pred chhcchhHHHHHHHHHh--hChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCC-CCCHhhHH
Q 008708 24 DEAGKKNWRRLMNQIEE--VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFL 100 (557)
Q Consensus 24 ~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 100 (557)
.+-.+++=|.+++.+.. ..++.-+++++..++.++....-.+.+.-.+-.+..+.-..=++|....+.+ +.+..+|
T Consensus 112 ~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW- 190 (625)
T KOG4422|consen 112 DPLQVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW- 190 (625)
T ss_pred CchhhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-
Confidence 44556777788777764 4477778887767777777666555443222222222222222333222111 1111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
+.|.+.+ -+|+.. +.+..++..||.++++-...+.|.+++++......+.+..+|+.+|.+-.-
T Consensus 191 -------K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-- 254 (625)
T ss_pred -------ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--
Confidence 2232222 223222 225556666666666666666666666666655555666666666543221
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHhccc----CCH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK----ARKLFALMAERGVQQSTVTYNSLMSFE----TNY 252 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 252 (557)
....++..+|+ .....||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++... +..
T Consensus 255 --~~~K~Lv~EMi---sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 255 --SVGKKLVAEMI---SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred --hccHHHHHHHH---HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 12244555554 23456666666666666666665544 344555666666666666666665532 112
Q ss_pred HHHHHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQR----AGLQ----PDVVSYALLINAYGKARREEEALAVFEEMLDAG----VRPTH---KAYNILLDAFA 317 (557)
Q Consensus 253 ~~a~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~li~~~~ 317 (557)
+.+..++.++.. ..++ .|...|..-+..|.+..+.+.|.++..-+.... +.|+. .-|..+..+.|
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 223333333322 1122 234445666666767777777766655443210 12221 23455666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CH----
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NL---- 392 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~---- 392 (557)
.....+.-...|+.|.-.-+-|+..+...++++..-.|+++-.-++|..++..|...+...-.-++..+++.. +.
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 6677777777777776666666666666777777777777766666666666554333333333333333322 10
Q ss_pred ----HH-----HHHH-------HHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC---CHHHHHHH
Q 008708 393 ----EK-----MMEI-------YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF-PP---DQKAKNIL 452 (557)
Q Consensus 393 ----~~-----a~~~-------~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p---~~~~~~~l 452 (557)
.. |..+ -.+|.+. .......+.++-.+.+.|..++|.+++..+.+.+- .| ......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 00 1111 1122222 23445566666667777777777777777644321 12 22233344
Q ss_pred HHHHhhcCCHHHHHHHHHhcC
Q 008708 453 LSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 453 ~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.....+.+....|...++-+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 555666667777777766654
No 27
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=8.6e-12 Score=114.98 Aligned_cols=463 Identities=12% Similarity=0.109 Sum_probs=331.7
Q ss_pred CCCchHHHHHh-hhhhhccchh--chhcchhHHHHHH---HHHhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccch
Q 008708 3 MLAPRKFMQKR-RKVEVFKDAA--DEAGKKNWRRLMN---QIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW 76 (557)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (557)
|.||...-+++ |+.+-|+|.+ +..++-.|-.-.. .......|.+++.+. .......-+..+.....--+.+..
T Consensus 45 ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERA-Ldvd~r~itLWlkYae~Emknk~v 123 (677)
T KOG1915|consen 45 ITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERA-LDVDYRNITLWLKYAEFEMKNKQV 123 (677)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhcccccchHHHHHHHHHHhhhhH
Confidence 66777777776 8888998773 3334444443222 112233567777743 222222223333333322333456
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008708 77 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRR 156 (557)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 156 (557)
..|.-+++.+...-+ --...|.-.+.+=-..|++..|.++|++..+. .|+..+|++.|..=.+-..++.|..+|++
T Consensus 124 NhARNv~dRAvt~lP--RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 124 NHARNVWDRAVTILP--RVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred hHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678888888877642 12345566666667789999999999999886 79999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008708 157 MQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ 236 (557)
Q Consensus 157 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 236 (557)
..- +.|+..+|....+.-.+.|+...|..+|..+++.-. .-..+...+.+....=..+..++.|.-+|+-.++.-++
T Consensus 200 fV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 200 FVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred Hhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 876 458999999999988999999999999999986311 11122345666666666788899999999988875332
Q ss_pred CC-HHHHHHHhcc---cCCHHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 237 QS-TVTYNSLMSF---ETNYKEVSK--------IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 237 ~~-~~~~~~ll~~---~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
.. ...|...... .|+...... -|+.+.+.+ +.|-.+|-..+..-...|+.+...++|++.+.. ++|
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 22 2344444443 555433332 244555553 347778888888888899999999999999875 455
Q ss_pred CHH-------HHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhC
Q 008708 305 THK-------AYNILLDA---FAISGMVDQARTVFKCMRRDRCSPDICSYTTML----SAYVNASDMEGAEKFFRRLKQD 370 (557)
Q Consensus 305 ~~~-------~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~ 370 (557)
-.. .|.-+-.+ -....+.+.+.++++..++ -++....||.-+= ....++.++..|.+++....
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 321 22222222 2357899999999999887 4455556655443 34457889999999999776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHH
Q 008708 371 GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAK 449 (557)
Q Consensus 371 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~ 449 (557)
|..|-..+|...|..-.+.++++....+|++.++.+ +-+..+|......=...|+.+.|..+|.-+++.....-+ ..|
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 568999999999999999999999999999999875 557788998888888999999999999999875422222 467
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 450 NILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
.+.+..-...|.++.|+.+++++.+.....
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 777777788999999999999988655543
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=2.5e-12 Score=127.67 Aligned_cols=358 Identities=13% Similarity=0.194 Sum_probs=215.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 106 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 185 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 185 (557)
+...|++++|.+++.++.+.. +.+...|..|...|-..|+.++++..+-......+. |...|..+.....+.|++..|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 333466666666666666553 335566666666666666666666655444333332 445666666666666666666
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-------cCCHHHHHHH
Q 008708 186 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-------ETNYKEVSKI 258 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-------~~~~~~a~~~ 258 (557)
.-.|.++++.. +++...+-.-...|-+.|+...|...|.++.....+.+..-+..++.. .++-+.|.+.
T Consensus 227 ~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 227 RYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666422 344444444555666666666666666666655332222222222211 2223555555
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------CCHHHHH
Q 008708 259 YDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR---------------------------PTHKAYN 310 (557)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~ 310 (557)
++..... +-..+...++.++..|.+...++.|......+...... ++..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 5554442 12234455677777777777777777777666552111 22222 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 311 ILLDAFAISGMVDQARTVFKCMRRDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
.++-++......+....+........ ..-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22223333333333333344444443 3334567788888888888888998888888876545567788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhhcC
Q 008708 389 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME--------SCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g 460 (557)
.|.+++|.+.|++.+... +.+...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 888899988888888652 3345666677778888888888888888753 2334555566666667778888
Q ss_pred CHHHHHHHHHh
Q 008708 461 ERNEANELLGN 471 (557)
Q Consensus 461 ~~~~a~~~~~~ 471 (557)
+.++-......
T Consensus 541 k~E~fi~t~~~ 551 (895)
T KOG2076|consen 541 KREEFINTAST 551 (895)
T ss_pred hHHHHHHHHHH
Confidence 87775544433
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=3.9e-12 Score=127.20 Aligned_cols=429 Identities=13% Similarity=0.102 Sum_probs=266.8
Q ss_pred HHHHHHhhChHHHHHHHhhhcCCCCChHHH--HHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 008708 34 LMNQIEEVGSAVAVLRSERTRGQPLPKDLV--LGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQG 110 (557)
Q Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 110 (557)
.+..+.+...|+..|.+ ..+..|..-+.. ++.+. .+.....+..+++.+..+-...+ .+|...+.|...|.-.|
T Consensus 208 Cf~kl~~~~~a~~a~~r-alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFER-ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHhccchhhHHHHHHH-HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcc
Confidence 34455666777777764 333333222221 22221 23344456677777776666553 56677788888888888
Q ss_pred ChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 111 DFNKAEKVLSFMNKKGYA--PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 111 ~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
++..+..+...+...... --..+|-.+.++|-..|++++|...|.+..+....--...+.-+...+...|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 888888888777664211 113457777888888888888888887766643322234445567778888888888888
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHH--
Q 008708 189 FMTLLDEEKSPLKPDQKMFHMMIYMYKKAG----GYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYD-- 260 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~~~~-- 260 (557)
|+.+.+. .+.+..+...|...|...+ ..+.|..++.+..+.- ..|...|-.+-.. .++....+.+|.
T Consensus 365 fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 365 FEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8888753 3455667777777776664 5566777777766643 2233344333222 233333344333
Q ss_pred --HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCCHH------
Q 008708 261 --QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA---GVRPTH------KAYNILLDAFAISGMVD------ 323 (557)
Q Consensus 261 --~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~------ 323 (557)
.+...+..+.+...|.+...+...|++++|...|...... ...++. .+--.+...+-..++++
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3334444566667777777777777777777777766543 111222 12222333333334444
Q ss_pred ----------------------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC
Q 008708 324 ----------------------------QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD-GFVP 374 (557)
Q Consensus 324 ----------------------------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p 374 (557)
+|...++...... ..++..+..+...+.+...+..|.+-|....+. ...+
T Consensus 520 k~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 4444444444322 234444555555566666666666655554432 1236
Q ss_pred CHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 375 NVITYGTLIKGYAK------------VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 375 ~~~~~~~l~~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
|..+.-.|++.|.. .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+..
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~- 676 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT- 676 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-
Confidence 77777777776653 345788999999998764 4567777888888999999999999999998854
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 443 PPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 443 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.-...+|-.+...|...|++..|.++++.+.
T Consensus 677 ~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 677 SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999999998866
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.1e-13 Score=124.59 Aligned_cols=206 Identities=15% Similarity=0.185 Sum_probs=146.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
.|+++.|.+.|++........... .-.+.-.+-..|++++|++.|-++... +..+..+.-.+...|....+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ea-lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEA-LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHH-HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 356777777777776653322222 223344566778888888887776432 233556667777778778888888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
+.+... -++.|+...+-|...|-+.|+-..|.+.+-+--.- ++-+..+...|...|....-+++++.+|++..- +.
T Consensus 581 ~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 766653 34567788888888888888888888776654433 466778888888888888888888888888764 57
Q ss_pred cCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 409 PNQTIFTTIMDA-YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 409 p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
|+..-|..++.. +.+.|+++.|..++++...+ ++.|...+..|++.|...|-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888888877754 45788888888888888764 67778888888888877763
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=2e-11 Score=121.44 Aligned_cols=363 Identities=15% Similarity=0.125 Sum_probs=273.5
Q ss_pred HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008708 68 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 147 (557)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 147 (557)
..+...|+.+.|.+++..++++.+ .+...|..|..+|-+.|+.+++...+-..-... +.|...|-.+.....+.|.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344555999999999999999974 678899999999999999999999887776664 45789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH----HHHHHHHHHHHcCCHHHH
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK----MFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 223 (557)
+.|.-.|.+.++..+. +...+---...|-+.|+...|..-|.++.... .+.|.. ..-.+++.+...++-+.|
T Consensus 224 ~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999987554 44455556678999999999999999998532 122222 223356677788888999
Q ss_pred HHHHHHHHHcC----CCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC---------------------------CCHH
Q 008708 224 RKLFALMAERG----VQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ---------------------------PDVV 272 (557)
Q Consensus 224 ~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~ 272 (557)
.+.++.....+ --|+..++..++-....++.+......+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998887632 2345556666666667777777777666552111 2222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVR--PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
+ .-++-++.+.+..+....+...+.+..+. -+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 12223344455555555555555555533 34567899999999999999999999999987666678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR--------VNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~ 422 (557)
|...|.+++|.+.|+..+... |.+...--.|...+.+.|+.++|.+.+..+. ..+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999999874 5566667778888999999999999999864 2345566666667777888
Q ss_pred hcCChhHHHHHHHHHHh
Q 008708 423 KNKDFDSAVVWYKEMES 439 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~ 439 (557)
..|+.++-+.....|+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVD 554 (895)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 89998886666666654
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.6e-11 Score=111.66 Aligned_cols=364 Identities=14% Similarity=0.130 Sum_probs=261.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHH
Q 008708 93 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL--TYQ 170 (557)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~ 170 (557)
+.++..+....-.+.+.|....|...|-..... .|-.=.+|..|..... +. +........ ...|.. .=-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHhc-CcccchHHHHH
Confidence 445566666677777888889999988887764 1334445544443332 22 222222221 221211 112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHhcc
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV--QQSTVTYNSLMSF 248 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~ 248 (557)
.+..++....+.+++.+-..... ..|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~---~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLS---SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 34456667778888888777776 345555555555566667778999999999999988632 1256677776655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
..+-.+..-+-...... -+--+.|...+.+.|.-.++.++|...|+..++.+ +.....|+.+..-|....+...|+.-
T Consensus 309 ~~~~skLs~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HhhhHHHHHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 44322222222222221 12234677888899999999999999999999865 34566888889999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
++...+-. +.|-..|-.|.++|.-.+...-|+-+|++..... |.|...|.+|+.+|.+.++.++|++.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99998764 6688999999999999999999999999999875 7789999999999999999999999999999875 3
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 409 PNQTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPDQ--KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 409 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.+...+..+..+|-+.++.++|.+.+++.++ .|...+. ....-|...+.+.+++++|..+.....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4668899999999999999999999988765 3322221 223335567788899999988766554
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=7e-12 Score=114.84 Aligned_cols=423 Identities=11% Similarity=0.086 Sum_probs=283.7
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHHHH--hhhccchHHHHHHHHHHHhcCCC-CC--CHhhHHHHHHHHHhcCChhHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTLVR--LKQLKKWNVVSEVLEWLRIQSWW-DF--NEMDFLMLITAYGKQGDFNKA 115 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A 115 (557)
..+|+..++ .+.+....|+.-.+..-.. .-+.+.+.+|+++++.+..+-+- +. .....+.+.-.+.+.|+++.|
T Consensus 217 ~~ealntye-iivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 217 TAEALNTYE-IIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHhhhhh-hhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 446666665 3455566665544322211 22345688899999888776431 11 123456667778899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------------CCCHHHHHHHHH-----HHHH
Q 008708 116 EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP------------RPSALTYQIILK-----LFVE 178 (557)
Q Consensus 116 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------~~~~~~~~~ll~-----~~~~ 178 (557)
+.-|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+..-. .|+....+..+. -+-+
T Consensus 296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 9999998876 48877666666677778999999999999976422 233333332221 1111
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHH-----H--------HH--------HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQK-----M--------FH--------MMIYMYKKAGGYEKARKLFALMAERGVQQ 237 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~--------~~--------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 237 (557)
. +-..|++.+-...+.-..-+.|+-. + +. .-...|.+.|+++.|+++++-..+..-+.
T Consensus 374 ~-~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 374 E-NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred h-hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 1 1122333322222111222333321 1 11 11345789999999999998887653332
Q ss_pred CHHHHHHH-----hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 238 STVTYNSL-----MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNIL 312 (557)
Q Consensus 238 ~~~~~~~l-----l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 312 (557)
....-+.+ +.+..++.+|..+-+...... .-+......-.+.....|++++|.+.|++.+.....-. .....+
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfni 530 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNI 530 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHh
Confidence 22222222 223456778888777766542 22444444444555678999999999999986532222 222233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 313 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
.-.+-..|++++|+..|-++..- +..+......+.+.|....+...|++++.+.... ++.|+....-|.+.|-+.|+-
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccch
Confidence 44577889999999999876532 1336778888899999999999999999887765 578899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHh
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS-LAKTADERNEANELLGN 471 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~ 471 (557)
..|.+.+-.--.. ++-+..+...|..-|....-+++|+.+|++..- +.|+..-|..++. ++++.|++..|..+++.
T Consensus 609 sqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 609 SQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999887665543 567888988899889999999999999998865 7899999987774 56789999999999987
Q ss_pred cCC
Q 008708 472 FNH 474 (557)
Q Consensus 472 ~~~ 474 (557)
..+
T Consensus 686 ~hr 688 (840)
T KOG2003|consen 686 IHR 688 (840)
T ss_pred HHH
Confidence 653
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=1.2e-11 Score=120.98 Aligned_cols=292 Identities=13% Similarity=0.120 Sum_probs=195.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTAL-MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 187 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 187 (557)
.|++++|.+.+....+.. +++..+..+ ..+..+.|+++.|.+.+.++.+..+.+...........+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999888876652 233333333 45557899999999999999875333222232344678889999999999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCC
Q 008708 188 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 267 (557)
.++.+.+. .+.+......+...|.+.|++++|..++..+.+.+..++. ....+
T Consensus 175 ~l~~~~~~----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l---------------------- 227 (398)
T PRK10747 175 GVDKLLEV----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML---------------------- 227 (398)
T ss_pred HHHHHHhc----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH----------------------
Confidence 99999753 2556788889999999999999999999999887543211 11000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
-..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +++... .+
T Consensus 228 --~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~ 300 (398)
T PRK10747 228 --EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VL 300 (398)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HH
Confidence 0012222333333334445555555555332 2446667777777777777777777777777663 344421 12
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
+.+....++.+++.+..+...+.. |-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 333345577777777777777653 556666777777777778888888888777764 57777777777777777888
Q ss_pred hHHHHHHHHHHh
Q 008708 428 DSAVVWYKEMES 439 (557)
Q Consensus 428 ~~A~~~~~~m~~ 439 (557)
++|.+++++...
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2e-13 Score=131.22 Aligned_cols=287 Identities=14% Similarity=0.128 Sum_probs=224.6
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHhcccCCHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG--VQQSTVTYNSLMSFETNYKEVSKI 258 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~a~~~ 258 (557)
+..+|...|..+.+ ...-+..+...+..+|...+++++|.++|+.+.+.. ...+...|.+.+....+.-+.--+
T Consensus 334 ~~~~A~~~~~klp~----h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPS----HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHH----hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 56788888888532 223334677778889999999999999999887653 123566777777765554443344
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 259 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
-+.+.... +-.+.+|..+.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 44444443 336789999999999999999999999999875 44 67889988888999999999999999888542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
+.+-..|.-+...|.+.++++.|+-.|+++.+.+ |-+.+....++..+-+.|+.++|+++++++...+. -|+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHH
Confidence 2233456667789999999999999999999876 66888888999999999999999999999997652 344444455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
+..+...+++++|+..++++.+ +.|+. ..+..+...|.+.|+.+.|..-+--+.+.++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6667788999999999999998 66766 567888899999999999999888877666644
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.6e-12 Score=115.94 Aligned_cols=338 Identities=15% Similarity=0.223 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG--RGGRYK-NAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
+=+.|+.+ ...|.+..+.-+|+.|.+.|.+.+...-..|++.-+ ...++- .-++.|-.|.+.|-. +..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----
Confidence 33445544 446777888888888888877767666666554322 222222 223444455444322 22232
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 254 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 254 (557)
+.|.+ |. ++-+. .+.+..++..+|.+.|+--..+.|.++|++......+.+..+||.++.... +..
T Consensus 191 ---K~G~v--Ad-L~~E~-------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-~~~ 256 (625)
T KOG4422|consen 191 ---KSGAV--AD-LLFET-------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-YSV 256 (625)
T ss_pred ---ccccH--HH-HHHhh-------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-hhc
Confidence 23333 22 33232 255678999999999999999999999999998888899999999987521 111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE----ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD-QARTVF 329 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~ 329 (557)
..++..+|......||..|+|+++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++.. .|..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 26788999999999999999999999999998864 5677888999999999999999999998888764 455555
Q ss_pred HHHHhC----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHHcCCHHH
Q 008708 330 KCMRRD----RC----SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNV---ITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 330 ~~~~~~----~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~---~~~~~l~~~~~~~g~~~~ 394 (557)
.++... .. +.+...|...+..|.+..+.+.|.++..-+... -+.|+. .-|..+..+.|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 22 235566788889999999999998887765432 133442 346778888899999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 395 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
....|+.|.-.-.-|+..+...++++..-.|.++-.-+++.++...|..-+......++..+
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 99999999877677899999999999999999999999999888776444444333333333
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=1e-11 Score=121.44 Aligned_cols=283 Identities=13% Similarity=0.121 Sum_probs=212.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYE 221 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~ 221 (557)
.|+++.|.+.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHH
Confidence 688888887777654432221 223333345557888888888888888642 34433222 3366778888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008708 222 KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 301 (557)
Q Consensus 222 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 301 (557)
.|...++.+.+.. +-+......+...|.+.|++++|..++..+.+.+
T Consensus 171 ~Al~~l~~~~~~~---------------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 171 AARHGVDKLLEVA---------------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 8888888777652 2356778888999999999999999999999876
Q ss_pred CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 302 VRPTH-------KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 374 (557)
Q Consensus 302 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (557)
..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 54322 13334444444555667777777776543 2457888899999999999999999999999874 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+.... ++.+....++.+++.+..+...+.. +-|+..+.++...|.+.|++++|.+.|+.+.+ ..|+...+..+..
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLAD 369 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHH
Confidence 66432 2334445699999999999998763 55677889999999999999999999999998 5799999999999
Q ss_pred HHhhcCCHHHHHHHHHhcC
Q 008708 455 LAKTADERNEANELLGNFN 473 (557)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~ 473 (557)
++.+.|+.++|..++++..
T Consensus 370 ~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.62 E-value=6.1e-10 Score=107.01 Aligned_cols=367 Identities=12% Similarity=0.101 Sum_probs=192.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
.-.+.|.+.+-++-|+.+|...++- ++-+...|......--..|..+....+|++....- +-....|......+-..|
T Consensus 521 ~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAG 598 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcC
Confidence 3344444444444445555444443 12234444444444444455555555555554432 223334444444445555
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHhcccCCHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT-YNSLMSFETNYKEVSKIY 259 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~a~~~~ 259 (557)
+...|..++..+.+. .+.+..+|.+-+..-....+++.|..+|.+....+..+-+.+ +..+....++.++|.+++
T Consensus 599 dv~~ar~il~~af~~----~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 599 DVPAARVILDQAFEA----NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred CcHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 555555555555431 122444555555555555555555555555544322222111 111223345555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 260 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 339 (557)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 339 (557)
++..+.- +--...|..+...+-+.++.+.|...|..=.+. ++..+..|..|...--+.|.+-+|..++++..-.+ +.
T Consensus 675 Ee~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 675 EEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 5555431 112234445555555555555555555443322 22233344444444455555555555555554433 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...|-..|..-.+.|+.+.|..++.+.++. .+.+...|..-|....+.++-......+++ +..|+.....+..
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~ 825 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAK 825 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHH
Confidence 4555555555555555555555555555543 244444555545444444443332222222 2446666777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccc
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGL 484 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 484 (557)
.+....+++.|...|.+.++. .|| ..+|..+...+.++|.-+.-.+++.++....+..+..+.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence 888888899999999999874 454 478888899999999988888999888766665554443
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=9.2e-12 Score=122.48 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=141.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 186 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 186 (557)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+..+.+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777777666542 33 23333445666666777777777777665433332233333456666777777777
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCC
Q 008708 187 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAG 266 (557)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 266 (557)
..++.+.+. .|.+..++..+...+...|++++|.+.+..+.+.++.+.. .+..+..
T Consensus 174 ~~l~~l~~~----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------- 229 (409)
T TIGR00540 174 HGVDKLLEM----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------- 229 (409)
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------
Confidence 777777642 1345556667777777777777777777777665422111 1100000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008708 267 LQPDVVSYALLINAYGKARREEEALAVFEEMLDAG---VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS 343 (557)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 343 (557)
..+.. ....+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|..++++..+.. |+...
T Consensus 230 -----~a~~~----~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 230 -----KAEIG----LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred -----HHHHH----HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 00000 011111111222222222211 01244455555555555555555555555555432 11110
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008708 344 ---YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV--ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 418 (557)
Q Consensus 344 ---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 418 (557)
...........++.+.+.+.++...+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 0111111122344455555555544432 2233 344455555555555555555555322222345555555555
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008708 419 DAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m 437 (557)
..+.+.|+.++|.+++++.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555554
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.8e-15 Score=138.44 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=63.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKG-YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
.+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33455555555555555554332221 1223334444444444455555555555555544322 33344444443 455
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIY 259 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~ 259 (557)
+++++|.+++....+. .++...+..++..+...++++++..+++.+....
T Consensus 91 ~~~~~A~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------------------------- 140 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP------------------------- 140 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------------------------
T ss_pred cccccccccccccccc-----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------------------------
Confidence 5555555555444321 1233334444444555555555555554433210
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 260 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 339 (557)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 339 (557)
..+.+...|..+...+.+.|+.++|+..+++.++.. +.+......++..+...|+.+++..+++...+.. +.
T Consensus 141 ------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 141 ------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp ---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 012344445555555555555555555555555432 2234445555555555555555555554444332 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
++..+..+..+|...|+.++|+..|++..... +.|......+.+++...|+.++|.++.+++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 33344444555555555555555555544432 334444445555555555555555544443
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=4.8e-15 Score=138.48 Aligned_cols=218 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
.++++.|...++.+...+.. +...+..++.. ...+++++|.+++....+. .+++..+...+..+...++++++..+
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHH
Confidence 34455555555555444322 44556666666 6888999999988877654 35666777888888899999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008708 329 FKCMRRDR-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 407 (557)
Q Consensus 329 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (557)
++.+.... .+.+...|..+...+.+.|+.++|+..+++..+.. |.|......++..+...|+.+++.+++....+..
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~- 210 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA- 210 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 99876542 34577788888889999999999999999998874 4467788889999999999999888888877653
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 408 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 408 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+.|+..+..+..+|...|++++|+.++++..+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 5566778888999999999999999999988743 4577788888899999999999998887764
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=7.2e-12 Score=123.22 Aligned_cols=288 Identities=13% Similarity=0.072 Sum_probs=202.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHHHHHcCCH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYMYKKAGGY 220 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 220 (557)
..|+++.|.+.+.+..+..+. ....+.....++...|+.+.|.+++.++.+. .|+. .+.-.....+...|++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCCH
Confidence 468888888888777665332 2334445566777788888888888887642 2332 2334457777778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 221 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 221 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
+.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.
T Consensus 170 ~~Al~~l~~l~~~~---------------------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 170 HAARHGVDKLLEMA---------------------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88888887777652 225667888999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 301 GVRPTHKAYNILLDAF---AISGMVDQARTVFKCMRRDRC---SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 374 (557)
Q Consensus 301 ~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (557)
+..+.......-..++ ...+..+++...+..+..... +.++..+..++..+...|+.++|.+++++..+.. |
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--p 294 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--G 294 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--C
Confidence 6543332211111222 222333333345554444321 2378889999999999999999999999999864 3
Q ss_pred CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 375 NVIT---YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ--TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 449 (557)
Q Consensus 375 ~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 449 (557)
|... ...........++.+.+.+.+++..+.. +-|+ ....++...|.+.|++++|.+.|+........|++..+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 3331 1122222334578889999998888752 3345 67779999999999999999999954433368999989
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc
Q 008708 450 NILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
..+...+.+.|+.++|.+++++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999875
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=8e-12 Score=109.82 Aligned_cols=291 Identities=16% Similarity=0.178 Sum_probs=180.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 223 (557)
..+.++|.++|-+|.+..+. +..+-.+|.+.|.+.|..+.|+++++.+++.+.........+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45667777777777664322 34444566677777777777777777776422111111123344566667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008708 224 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 303 (557)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 303 (557)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.
T Consensus 127 E~~f~~L~de~---------------------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 127 EDIFNQLVDEG---------------------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHhcch---------------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 77776665531 112334556777777778888888887777766544
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 304 PTH----KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 379 (557)
Q Consensus 304 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (557)
+.. ..|.-|...+....+++.|..++.+..+.. +..+..--.+...+...|+++.|.+.++...+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 332 245555566666677888888888777654 234444555667778888888888888888877544445667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-- 457 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-- 457 (557)
..|..+|.+.|+.++....+.++.+.. +....-..+...-....-.+.|..++.+-+. -.|+...+..++..-.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcc
Confidence 788888888888888888888877653 3333334444433333334555554444443 2688888887776543
Q ss_pred -hcCCHHHHHHHHHhcC
Q 008708 458 -TADERNEANELLGNFN 473 (557)
Q Consensus 458 -~~g~~~~a~~~~~~~~ 473 (557)
..|...+...++++|.
T Consensus 329 aeeg~~k~sL~~lr~mv 345 (389)
T COG2956 329 AEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccchhhhHHHHHHHH
Confidence 3445666666666654
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=4.3e-10 Score=107.98 Aligned_cols=385 Identities=13% Similarity=0.077 Sum_probs=186.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFM----NKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
+..|..|..++..+++.- +-++..|.+-...=-.+|+.+...+++++- ...|+.-+...|-.=...|-..|..-
T Consensus 419 LetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 334444555555544432 233444444444444555555555555432 22344555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 149 NAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 149 ~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
.+..+....+..|+.- -..||..-...|.+.+.++-|..+|..+++ -++.+...|...+..--..|..+....+
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq----vfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ----VFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh----hccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 5555555555544431 123455555555555555555555555543 2334444555555444455555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008708 227 FALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 303 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 303 (557)
|+++...-. .....|-.... ..|+...|..++.+..+..+. +...|..-+........++.|..+|.+.... .
T Consensus 573 lqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 573 LQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 555554311 11222221111 135555555555555554332 4445555555555555555555555555442 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
|+..+|..-+...--.+..++|.+++++.++. .|+ .-.|..+.+.+-+.++.+.|...|..-.+. +|.....|-.|
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL 725 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL 725 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence 44444444444444455555555555555443 222 234445555555555555555555443332 23333344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADER 462 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 462 (557)
...=-+.|++-+|..++++..-.+ +-+...|-..|..-.+.|..+.|..+..++++. ++.+...|..-+....+.++-
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 444455555555555555555433 334555555555555555555555555555442 233334555555555555555
Q ss_pred HHHHHHHHhc
Q 008708 463 NEANELLGNF 472 (557)
Q Consensus 463 ~~a~~~~~~~ 472 (557)
......+++.
T Consensus 804 Tks~DALkkc 813 (913)
T KOG0495|consen 804 TKSIDALKKC 813 (913)
T ss_pred hHHHHHHHhc
Confidence 5555555544
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.5e-09 Score=100.58 Aligned_cols=447 Identities=12% Similarity=0.153 Sum_probs=319.8
Q ss_pred Hhhhhhhccch--hchhcchhHHHHHHHHH---hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHH
Q 008708 12 KRRKVEVFKDA--ADEAGKKNWRRLMNQIE---EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWL 86 (557)
Q Consensus 12 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 86 (557)
.+|+..+|+++ ...+++..|-.-+..-- ....|..++.+ ....-|.-+...+..+..-..+|...-|.++|+.-
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dR-Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDR-AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHH-HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34899999877 56778888876655333 34467777774 33344455556666666666778888999999743
Q ss_pred HhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CC-CC
Q 008708 87 RIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-GP-RP 164 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~ 164 (557)
.. +.|+...|.+.|..=.+-+.++.|..++++..-- .|++..|-.-...=.++|++..|..+|+..... |- .-
T Consensus 168 ~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 168 ME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred Hc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 32 5689999999999999999999999999998765 589999999999999999999999999988764 11 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCC
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL--------FALMAERGVQ 236 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~ 236 (557)
+...+.+...--.++..++.|.-+|+-+++.- +.......|..+...=-+.|+....... |+.+.+.+.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~--pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np- 319 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI--PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP- 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-
Confidence 22334444444456778999999999998632 1122255676676666666776555443 333443321
Q ss_pred CCHHH---HHHHhcccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH----HH----HHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 237 QSTVT---YNSLMSFETNYKEVSKIYDQMQRAGLQPDVV-SYALL----IN----AYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 237 ~~~~~---~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l----i~----~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
.|-.+ |-.|....|+.+...++|+.....-++.... .|.-. |+ .-....+.+.+.++|+..++. ++.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 23333 3445556799999999999998864332221 12111 11 124568899999999999883 455
Q ss_pred CHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 305 THKAYNILLDAF----AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 380 (557)
Q Consensus 305 ~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (557)
...||..+=-+| .++.++..|.+++...+ |.-|-.-+|...|..-.+.++++.+..+|++.++-+ |-+..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 566666554444 46788999999998877 447888899999999999999999999999999986 77889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNG-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-- 457 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-- 457 (557)
.....-...|+.+.|..+|.-++... +......|-+.|+--...|.++.|..+++.+++. .+-..+|-.+...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccc
Confidence 88888889999999999999998642 1122456777777777899999999999999873 344456655554322
Q ss_pred ---hcC-----------CHHHHHHHHHhcC
Q 008708 458 ---TAD-----------ERNEANELLGNFN 473 (557)
Q Consensus 458 ---~~g-----------~~~~a~~~~~~~~ 473 (557)
..+ +...|+.+++++.
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 334 5667788887654
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.4e-10 Score=106.13 Aligned_cols=386 Identities=15% Similarity=0.107 Sum_probs=253.5
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFN-EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRY 147 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 147 (557)
+-..+.++.|.+.+.|++... |+ +..|.....+|...|++++..+--.+.++.+ |+ +.++..-.+++-..|++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccH
Confidence 455677888888888888776 45 6778888888888888888888887777763 44 55677777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-----------
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----------- 216 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 216 (557)
++|+.=..-..-.+.-.+..+-..+=+.+-+. |..-...-+......+-|+.....+....+..
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 87765333221111111222211111111111 11222222211122333433322222221110
Q ss_pred --------------cC---CHHHHHHHHHHHHHc-CCCCCHH---------HHHHHhc-----ccCCHHHHHHHHHHHHH
Q 008708 217 --------------AG---GYEKARKLFALMAER-GVQQSTV---------TYNSLMS-----FETNYKEVSKIYDQMQR 264 (557)
Q Consensus 217 --------------~g---~~~~A~~~~~~~~~~-~~~~~~~---------~~~~ll~-----~~~~~~~a~~~~~~~~~ 264 (557)
.+ .+..|...+.+-... -..++.. .-..++. ..|+.-.+..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01 223333332221110 0011111 1111122 15788888888998888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 265 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
....++ ..|--+..+|....+.++....|++..+.. +-++.+|..-..++.-.+++++|..=|++..... +.+...|
T Consensus 355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 754433 337778889999999999999999998865 4567788888888888999999999999998764 3366778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcCHHH--HHHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-----IKPNQTI--FTTI 417 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~--~~~l 417 (557)
-.+..+..+.+.+++++..|++..+. +|..+..|+.....+...+++++|.+.|+..++.. +..+... --.+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 88888888999999999999999876 57778899999999999999999999999998642 1112222 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
+-.- =.+++..|..++.++.+ +.|.. ..+..+...-...|+.++|+++|++.
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2222 23899999999999988 45544 57889999999999999999999874
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=8.6e-11 Score=103.46 Aligned_cols=303 Identities=16% Similarity=0.142 Sum_probs=219.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILK 174 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~ 174 (557)
+|..=++.+. ..+.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++.+.+.+.---+. ..+...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 4444344333 568899999999999864 34666777899999999999999999998876521111 234556777
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 254 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 254 (557)
-|...|-++.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+..+-
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------- 178 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------- 178 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-------------
Confidence 8999999999999999997532 23345677899999999999999999988887654332211
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
-...|.-+...+....+.+.|..++.+..+.. +..+..--.+.+.+...|+++.|++.++.+.+
T Consensus 179 ---------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 179 ---------------IAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred ---------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 12346667777777888999999999988764 23344445567788889999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008708 335 DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF 414 (557)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 414 (557)
.+..--..+...|..+|...|+.++....+.++.+.. +....-..+...-....-.+.|..++.+-+.. +|+...+
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf 318 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGF 318 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHH
Confidence 7655556677888889999999999999999988764 34444444444445555566777666665554 6899988
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHh
Q 008708 415 TTIMDAYGK---NKDFDSAVVWYKEMES 439 (557)
Q Consensus 415 ~~l~~~~~~---~g~~~~A~~~~~~m~~ 439 (557)
..++..-.. -|...+.+.+++.|+.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHH
Confidence 888886543 3456667777777764
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.1e-10 Score=102.84 Aligned_cols=351 Identities=16% Similarity=0.151 Sum_probs=221.8
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCh
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHT--ALMEAYGRGGRY 147 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~ 147 (557)
++..+..+.|...|.......+ ..-..|..|.... -+.+.+.. .... .+.+...+. .+..++-...+.
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~P--~~W~AWleL~~li---t~~e~~~~----l~~~-l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRYP--WFWSAWLELSELI---TDIEILSI----LVVG-LPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcCC--cchHHHHHHHHhh---chHHHHHH----HHhc-CcccchHHHHHHHHHHHHHHHHH
Confidence 3556666777777766665432 2223333333322 22222222 2211 111111111 233455555567
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 227 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (557)
++++.-.+.....|.+.+...-+....+.-...+++.|+.+|+.+.+.+.-. -.|..+|+.++-. +..+-.- .++
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-l~dmdlySN~LYv--~~~~skL--s~L 318 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-LDDMDLYSNVLYV--KNDKSKL--SYL 318 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-chhHHHHhHHHHH--HhhhHHH--HHH
Confidence 7777777777666665555544445555556677777777777776532111 1344566655432 2221111 111
Q ss_pred HHH--HHcCCCCCHHH-HHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 228 ALM--AERGVQQSTVT-YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 228 ~~~--~~~~~~~~~~~-~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
..- .-...+|.+.+ ....-+..+..+.|...|+...+.++. ....|+.+..-|....+...|++.++.+++-. +.
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR 396 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence 111 11112222211 001111234566777777777776433 56788899999999999999999999998864 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
|-..|-.|.++|.-.+...-|+-.|++...-. +.|...|.+|...|.+.++.++|++.|++....| ..+...+..|.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHH
Confidence 77899999999999999999999999998754 5588999999999999999999999999999877 557788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH----CCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 385 GYAKVNNLEKMMEIYDKMRV----NGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|-+.++.++|...|++-++ .|...+ ...-.-|..-+.+.+++++|..+......
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999999999988765 232222 22222345566788888888877766654
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=1.1e-10 Score=106.12 Aligned_cols=293 Identities=14% Similarity=0.158 Sum_probs=213.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
.|+|.+|+++..+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+.-..++...+..........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999988777633 34556666777888899999999999988764456677777788889999999999999
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC
Q 008708 189 FMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 268 (557)
..++.+.. +.+..+......+|.+.|++.....++..+.+.|.-.+... ..+
T Consensus 176 v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~------------------~~l------ 227 (400)
T COG3071 176 VDQLLEMT----PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA------------------ARL------ 227 (400)
T ss_pred HHHHHHhC----cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH------------------HHH------
Confidence 99987643 55677888899999999999999999999998875443321 000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 348 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 348 (557)
-..+|..++.-....+..+.-...++..... .+-++..-.+++.-+..+|+.++|.++..+..+.+..|+. ...
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 2235555665555555555555566655433 2445556666777778888888888888888777655552 222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
-.+.+-++...-++..+...+.. +.++..+.+|+..|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|++.
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 34556677776666666655542 445577778888888888888888888877764 678888888888888888888
Q ss_pred HHHHHHHHHHh
Q 008708 429 SAVVWYKEMES 439 (557)
Q Consensus 429 ~A~~~~~~m~~ 439 (557)
+|.++.++.+.
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 88888877764
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.4e-11 Score=118.71 Aligned_cols=283 Identities=12% Similarity=0.079 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 111 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 111 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
+..+|...|++.... +..+..+...+..+|...+++++|.++|+.+.+..+- -+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346777777775544 2223345556677777777777777777777664321 244556555533211 112222
Q ss_pred H-HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCC
Q 008708 189 F-MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 267 (557)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 267 (557)
+ +.+++. -+-.+.+|.++.++|.-+++.+.|++.|++..+.. |
T Consensus 409 Laq~Li~~----~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p------------------------------ 452 (638)
T KOG1126|consen 409 LAQDLIDT----DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--P------------------------------ 452 (638)
T ss_pred HHHHHHhh----CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--C------------------------------
Confidence 2 222221 13445677777777777777777777777776541 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
....+|+.+..-+.....+|.|...|+..+... +-+-..|.-+.-.|.+.++++.|.-.|++..+-+ +.+.+....+
T Consensus 453 -~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~ 529 (638)
T KOG1126|consen 453 -RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHI 529 (638)
T ss_pred -ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhh
Confidence 133444444444455555555555555544321 1111233334444555555555555555554432 2233444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
...+.+.|+.++|+++++++.... +.|+..--..+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 455555555555555555555443 223333333344444455555555555555543 122244445555555555555
Q ss_pred hHHHHHHHHHHh
Q 008708 428 DSAVVWYKEMES 439 (557)
Q Consensus 428 ~~A~~~~~~m~~ 439 (557)
+.|+.-|--+.+
T Consensus 608 ~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 608 DLALLHFSWALD 619 (638)
T ss_pred hHHHHhhHHHhc
Confidence 555555555544
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.6e-09 Score=98.52 Aligned_cols=286 Identities=15% Similarity=0.128 Sum_probs=230.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
..|+|.+|.++..+-.+.+.. ....|..-..+.-..|+.+.+-.++.++-+. .-.++....-+........|+++.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchh
Confidence 369999999999988777655 3456667778888899999999999998642 224566677777888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 223 ARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 223 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
|..-++++.+.+ +-+.........+|.+.|++.....++.++.+.|.
T Consensus 172 A~~~v~~ll~~~---------------------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 172 ARENVDQLLEMT---------------------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred HHHHHHHHHHhC---------------------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 998888887753 23566778888999999999999999999999887
Q ss_pred CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 303 RPTHK-------AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 303 ~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (557)
-.+.. +|..+++-....+..+.-...++..... ...++..-.+++.-+.+.|+.++|.++.++..+.+..|+
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 65543 6777777777777777766777776543 244677778888999999999999999999998876666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
. ...-.+.+.++.+.-++..++-.+. .+.++..+.++...|.+.+.|.+|...|+...+ ..|+..++..+..+
T Consensus 298 L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~ 370 (400)
T COG3071 298 L----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADA 370 (400)
T ss_pred H----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHH
Confidence 2 2233566778888888888877664 355678899999999999999999999998887 68999999999999
Q ss_pred HhhcCCHHHHHHHHHhcC
Q 008708 456 AKTADERNEANELLGNFN 473 (557)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~ 473 (557)
+.+.|+..+|.+..++..
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 999999999999998755
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9.6e-10 Score=100.02 Aligned_cols=369 Identities=13% Similarity=0.093 Sum_probs=256.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C-hHHH-------------HHHHHHHHhCC--
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-R-YKNA-------------EAIFRRMQSSG-- 161 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~-~~~A-------------~~~~~~m~~~~-- 161 (557)
-...+.+|...++-+.|...+...+..- ....-|.++..+.+.| + ++.. ++.+.-..+.+
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 3457788888888888888776655432 1222233333222222 1 1211 11111111211
Q ss_pred -------------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 162 -------------PRPSALTYQIILKLFV--EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 162 -------------~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
..|...+....+.+++ -.++...|...+-.+-. ...++-|......+..++...|+.++|+..
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~--~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHD--NTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHh--hccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 2333333334444443 33455555555544432 456778888999999999999999999999
Q ss_pred HHHHHHcCCC--CCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 227 FALMAERGVQ--QSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 227 ~~~~~~~~~~--~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
|++....++- .....|..++...|++++...+...+.... .-+...|-.-+......++++.|+.+-++.++.. +.
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r 332 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PR 332 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cc
Confidence 9998765321 123457778888899998888887776542 1233344444555667789999999999988753 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI- 383 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~- 383 (557)
+...|..-...+...|+.++|.-.|+...... +-+..+|..|+..|...|.+.+|.-+-++.... ++.+..+.+.+.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 44556555667888999999999999887543 457889999999999999999999888877664 356777776663
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 384 KGYA-KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 384 ~~~~-~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
..|. ....-++|.+++++.+.. .|+ ....+.+...|...|+.+.++.+++..+. ..||....+.|...+...+.
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhh
Confidence 3333 223458899999988864 566 56778888899999999999999999987 68999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 008708 462 RNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~ 480 (557)
+.+|...+....+.++...
T Consensus 487 ~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHHHhcCccch
Confidence 9999999999886666543
No 53
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=8.1e-09 Score=99.54 Aligned_cols=392 Identities=15% Similarity=0.149 Sum_probs=229.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008708 64 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143 (557)
Q Consensus 64 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 143 (557)
+..+.++...+++...+++.+.+.+.. +-...+.....-.+...|+-++|......-.... ..+.++|..+.-.+..
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 344445555566666777666666532 2334555555556666677777777766665543 3366677777777766
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 223 (557)
..++++|+..|......+.. |...+.-+.-.-++.++++.....-..+++. .+.....|..++.++.-.|++..|
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777665433 5555555555555666666666655555531 123345566666666677777777
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHhc---------ccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 008708 224 RKLFALMAERG-VQQSTVTYNSLMS---------FETNYKEVSKIYDQMQRAGLQPDVV-SYALLINAYGKARREEEALA 292 (557)
Q Consensus 224 ~~~~~~~~~~~-~~~~~~~~~~ll~---------~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 292 (557)
..+++...+.. -.|+...+..... -.|..++|.+.+..-...- .|.. .-.+-...+.+.+++++|..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 77777666543 2344433332111 1344555555444433221 1211 22334455667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHH-HH----------------------------------HHHHHhCC
Q 008708 293 VFEEMLDAGVRPTHKAYNILLD-AFAISGMVDQAR-TV----------------------------------FKCMRRDR 336 (557)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~----------------------------------~~~~~~~~ 336 (557)
++..++.. .||..-|...+. ++.+-.+.-++. .+ +..+.+.|
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 77777665 355544433333 232222222222 33 33333334
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hCC----------CCCCHH--HHHHHHHHHHHcCCHHHHH
Q 008708 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLK--------QDG----------FVPNVI--TYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~----------~~p~~~--~~~~l~~~~~~~g~~~~a~ 396 (557)
+++ ++..+.+.|-. +.++- +++++. ..| -+|... ++..++..+-+.|+++.|.
T Consensus 319 ~p~---vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred CCc---hhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 332 22222222211 11111 222221 111 145554 4556788899999999999
Q ss_pred HHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 397 EIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 397 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
.+++..+.+ .|+ ...|..-.+.+..+|++++|..++++..+.+ .||...-.--+....+.++.++|.++..+..+.
T Consensus 392 ~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 392 EYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999999975 666 4667777788999999999999999999865 556555556677788899999999999988766
Q ss_pred CC
Q 008708 476 NN 477 (557)
Q Consensus 476 ~~ 477 (557)
+.
T Consensus 469 ~~ 470 (700)
T KOG1156|consen 469 GF 470 (700)
T ss_pred cc
Confidence 54
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1e-09 Score=102.00 Aligned_cols=365 Identities=14% Similarity=0.076 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
+-...+-|.+.|++++|++.|...++. .|+ +..|.....+|...|+|++..+.-.+.++.++. -...+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 345677889999999999999999987 477 888999999999999999999988887775332 2345555566777
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcC--CCCCHHHHHHHhccc-----
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL-MAERG--VQQSTVTYNSLMSFE----- 249 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~--~~~~~~~~~~ll~~~----- 249 (557)
..|++++|+.=..-+-- ..++ .+..+--.+=+.+-+. |....++ +.+.+ +-|+....++.....
T Consensus 195 ~lg~~~eal~D~tv~ci--~~~F-~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCI--LEGF-QNASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hhccHHHHHHhhhHHHH--hhhc-ccchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 77888777643222110 0011 1111111111111111 1111111 11111 334444444433210
Q ss_pred -----------CCHHHHHHHH------------HHHHHC------CCCCC---------HHHHHHHHHHHHhcCCHHHHH
Q 008708 250 -----------TNYKEVSKIY------------DQMQRA------GLQPD---------VVSYALLINAYGKARREEEAL 291 (557)
Q Consensus 250 -----------~~~~~a~~~~------------~~~~~~------~~~~~---------~~~~~~li~~~~~~g~~~~A~ 291 (557)
....++.+.+ +.+.+. ....+ ..+.......+.-.|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 0112222211 111111 11111 222333333455678889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 292 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (557)
.-|+..++....+ ...|-.+..+|....+.++....|+.....+ +-++.+|..-.+.+.-.+++++|..=|++.+...
T Consensus 347 ~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998865332 3337778888999999999999999998765 4467788888888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------
Q 008708 372 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD------ 445 (557)
Q Consensus 372 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------ 445 (557)
+-+...|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v 500 (606)
T KOG0547|consen 425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIV 500 (606)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccc
Confidence 567788888888889999999999999999876 566689999999999999999999999999987 3444
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCc
Q 008708 446 ---QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481 (557)
Q Consensus 446 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (557)
+.+..+++-.-. .+++..|..++++..+.++....
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHH
Confidence 222233332222 38999999999999877775443
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=9.2e-11 Score=103.28 Aligned_cols=233 Identities=16% Similarity=0.155 Sum_probs=194.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|...|.+..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----------------------------------~~~~dTfllLskvY~ridQP 272 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----------------------------------FPHPDTFLLLSKVYQRIDQP 272 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----------------------------------CCchhHHHHHHHHHHHhccH
Confidence 55788888888888888888776654 45777888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
..|+.++.+-++. .+.++.........+...++.++|.++++...+.. +.++....++...|...++++-|+.+|+++
T Consensus 273 ~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 273 ERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred HHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 9999999998875 23344444567778889999999999999998764 456777788888999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 445 (557)
++.| .-++..|+.+.-+|...++++.++..|++....--.|+ ..+|-.+.......|++..|.+.|+-.+..+ ...
T Consensus 351 LqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h 428 (478)
T KOG1129|consen 351 LQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQH 428 (478)
T ss_pred HHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cch
Confidence 9999 55889999999999999999999999999886533344 5678888888899999999999999998753 334
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 446 QKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
...++.|.-.-.+.|+++.|+.++.......+.
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 478999999999999999999999987655543
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=2.5e-10 Score=103.85 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667888899999999999999999998753 4456788888999999999999999999988764 446677888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
.+...|++++|.+.+++...... +.....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999887532 2345567778899999999999999999998753 345678888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+|..++++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999875 35566777788888999999999999887764
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=7.9e-10 Score=113.12 Aligned_cols=233 Identities=10% Similarity=0.017 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q 008708 164 PSALTYQIILKLFVE-----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK---------AGGYEKARKLFAL 229 (557)
Q Consensus 164 ~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~ 229 (557)
.+...|...+++... .+.+++|..+|+++++.. +.+...|..+..++.. .+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld----P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS----PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 455555555544321 134567777887777532 2334455555554432 2346788888877
Q ss_pred HHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008708 230 MAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 309 (557)
Q Consensus 230 ~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 309 (557)
..+.. +-+...+..+...+...|++++|...|+++.+.. +.+...+
T Consensus 330 Al~ld---------------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~ 375 (553)
T PRK12370 330 ATELD---------------------------------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIK 375 (553)
T ss_pred HHhcC---------------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 77642 1244455555556666666666666666666543 2334455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+..++...|++++|...+++..+.... +...+..++..+...|++++|...++++.....+.+...+..+..++...
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence 56666666666666666666666654321 22222333334555666666666666665443122344455566666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 390 NNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|++++|...+.++... .|+ ....+.+...|...| +.|...++.+.+
T Consensus 455 G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 455 GKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred CCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 6666666666665443 223 233344444555555 355555555543
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=5.4e-10 Score=101.61 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344555555556666666666666555442 223445555555555555555555555555544322 334444455555
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
...|++++|.+.+.+++... ..+.....+..+..++...|++++|...+.+...
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554311 1112223344444455555555555555544443
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=9.6e-09 Score=91.79 Aligned_cols=415 Identities=14% Similarity=0.135 Sum_probs=249.1
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 120 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 120 (557)
+..|+++++....-+....++.-.=+....-++|++++|+..+..+.... .++...+..|.-++.-.|.+.+|..+-.
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 44677777743322222222222333345567888888888888887754 3555666677777777788888888765
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC
Q 008708 121 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL 200 (557)
Q Consensus 121 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 200 (557)
+..+ ++-.-..|+....+.|+-++-..+.+.+... ..--.+|.....-.-.+.+|++++.+++..
T Consensus 116 ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d----- 180 (557)
T KOG3785|consen 116 KAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD----- 180 (557)
T ss_pred hCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 5432 4444555556666667766666655554321 111223333333344678899999988742
Q ss_pred CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-----cCCHHH--HHHHH----------HHH
Q 008708 201 KPDQKMFHM-MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-----ETNYKE--VSKIY----------DQM 262 (557)
Q Consensus 201 ~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~--a~~~~----------~~~ 262 (557)
.|+....|. +.-+|.+..-++-+.++++-.... ++.++...|..... .|+..+ ...+. +.+
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 344444554 455777888888888888776654 22233333332221 122111 11111 111
Q ss_pred HHCC------------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHcC
Q 008708 263 QRAG------------LQPD-----VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDA-----FAISG 320 (557)
Q Consensus 263 ~~~~------------~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g 320 (557)
.+.+ +-|. +..-..|+-.|.+.++..+|..+.+++.- ..|.......+..+ .....
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 1111 0111 22334566678899999999999887642 12333333222222 11222
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 321 MVDQARTVFKCMRRDRCSPDIC-SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIY 399 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (557)
...-|.+.|+-.-..+..-|.. .-.++.+.+.-..++++++.+++.+..-=...|...|| +..+++..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHH
Confidence 3566677776665554443332 24456666677778999999999887754444555554 789999999999999999
Q ss_pred HHHHHCCCCcCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 400 DKMRVNGIKPNQTIF-TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 400 ~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
-++....++ |..+| ..+.++|.+.++++.|..++-++- -+.+. ..+..+..-|.+.+.+--|.+.+..+...++
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 888755444 44455 556678999999999987765553 23333 3455666789999999999999988877766
Q ss_pred CCC
Q 008708 478 EPG 480 (557)
Q Consensus 478 ~~~ 480 (557)
.|.
T Consensus 493 ~pE 495 (557)
T KOG3785|consen 493 TPE 495 (557)
T ss_pred Ccc
Confidence 553
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=3.6e-10 Score=110.13 Aligned_cols=247 Identities=21% Similarity=0.266 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-----GP-RPSALTY-QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 203 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (557)
..+...+...|...|+++.|..+++...+. |. .|...+. ..+...|...+++++|..+|+.++......+.++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888999999999999999887654 21 2333333 3467788899999999999999886533223233
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 008708 204 ----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDV-VSYALLI 278 (557)
Q Consensus 204 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li 278 (557)
..+++.|..+|.+.|++++|...++...+ +++..... ..|.+ ..++.++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------------------I~~~~~~~-~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------------------IYEKLLGA-SHPEVAAQLSELA 332 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------------------HHHHhhcc-ChHHHHHHHHHHH
Confidence 35677788889999999999998865543 34442111 12222 2466777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CC-CHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDA---GVRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDR----C--SP-DICSY 344 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~-~~~~~ 344 (557)
..|...+++++|..++....+. -..++ ..+++.|...|...|++++|.++|+++.... . .+ ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 7888899999999888876432 11112 2467777777777777777777777665421 1 11 12345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQ----DG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~----~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
+.+...|.+.+++.+|.++|.+... .| .+....+|..|...|...|+++.|.++.+.+.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6666666666666666666655322 11 11223456666666666666666666655554
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=6.2e-10 Score=113.88 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=177.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHhH
Q 008708 128 APSVVSHTALMEAYGR-----GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE---------ANKFKEAEEVFMTLL 193 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~ 193 (557)
+.+...|...+.+... .+.+++|+..|++..+..+. +...|..+..++.. .+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3466666666555321 24588999999998876543 45566655554432 244789999999988
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHH
Q 008708 194 DEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVS 273 (557)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~ 273 (557)
+.. +.+..++..+...+...|++++|...|++..+.+ +.+...
T Consensus 332 ~ld----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------------------------P~~~~a 374 (553)
T PRK12370 332 ELD----HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---------------------------------PISADI 374 (553)
T ss_pred hcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------------CCCHHH
Confidence 532 4567788888888889999999999998888752 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+++......+.++..+..+..++..
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 777788888888888888888888776422 2223334444566678888888888887765423345567777788888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
.|++++|...+.++.... +.+....+.+...|...| ++|...++.+.+. ...+....+.. ..+.-.|+.+.+..
T Consensus 454 ~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~ 528 (553)
T PRK12370 454 KGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKM 528 (553)
T ss_pred CCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHH
Confidence 889888888888876542 223344555556666666 4777777776642 12232233333 33445667666666
Q ss_pred HHHHHHhCC
Q 008708 433 WYKEMESCG 441 (557)
Q Consensus 433 ~~~~m~~~~ 441 (557)
+ +++.+.+
T Consensus 529 ~-~~~~~~~ 536 (553)
T PRK12370 529 W-NKFKNED 536 (553)
T ss_pred H-HHhhccc
Confidence 6 7776543
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=3.2e-10 Score=110.49 Aligned_cols=248 Identities=20% Similarity=0.224 Sum_probs=183.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKK-----G-YAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSS-----GP- 162 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~- 162 (557)
..++..|...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++.+|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667999999999999999999987764 2 123333 3445788999999999999999998652 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC---CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008708 163 -RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS---PLKPDQ-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ 237 (557)
Q Consensus 163 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 237 (557)
+.-..+++.|..+|.+.|++++|...++.+++.... ...|.+ ..++.++..+...+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i---- 354 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI---- 354 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----
Confidence 123456778888999999999999999888764322 122333 34666888899999999999999765542
Q ss_pred CHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCCHHHHH
Q 008708 238 STVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG----V---RPTHKAYN 310 (557)
Q Consensus 238 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~ 310 (557)
+..........-..+++.|...|.+.|++++|.++|++.+... . .-....++
T Consensus 355 ---------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 355 ---------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred ---------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 2222111111234679999999999999999999999986431 1 12244678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 311 ILLDAFAISGMVDQARTVFKCMRR----DR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
.+...|.+.+.+.+|..+|.+... .| .+....+|..|...|...|+++.|+++...+.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 889999999999999988886532 12 22345789999999999999999999988876
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2e-07 Score=89.26 Aligned_cols=417 Identities=13% Similarity=0.131 Sum_probs=243.1
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 120 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 120 (557)
+++|++... .+....+-+.+.++--+..+....+|+.|+.+.+.-.. ...+...+.--..+..+.++.++|...++
T Consensus 28 ~e~a~k~~~-Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 28 YEEAVKTAN-KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHH-HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 446666666 34556677777777777778888888888855433221 11111222344666678888899888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------------CHHHHHHH-
Q 008708 121 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP---------------------------SALTYQII- 172 (557)
Q Consensus 121 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------~~~~~~~l- 172 (557)
.... .+..+...-...+.+.|++++|+++|+.+.+.+... ...+|..+
T Consensus 104 ~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~y 179 (652)
T KOG2376|consen 104 GLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLY 179 (652)
T ss_pred cccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHH
Confidence 3322 244466666777888889999999988886543310 11133322
Q ss_pred --HHHHHHcCCHHHHHHHHHHhHhccCCC-----C-CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 173 --LKLFVEANKFKEAEEVFMTLLDEEKSP-----L-KPDQ-----KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 239 (557)
Q Consensus 173 --l~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 239 (557)
...+...|++.+|+++++...+..... . ..+. .+..-|.-++-..|+.++|..+|...+...+....
T Consensus 180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 234566788888888888773221000 0 0111 12233555666778888888888888776543221
Q ss_pred ---HHHHHHhcccCC--H--HHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 240 ---VTYNSLMSFETN--Y--KEVSKIYDQMQRAGL----------QPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 240 ---~~~~~ll~~~~~--~--~~a~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
+.-|.++...++ + ..++..++....... .-... +...+....-.+..+.+.++...... .
T Consensus 260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i-~~N~~lL~l~tnk~~q~r~~~a~lp~--~ 336 (652)
T KOG2376|consen 260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI-YRNNALLALFTNKMDQVRELSASLPG--M 336 (652)
T ss_pred HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhCCc--c
Confidence 222333332111 1 122222222111100 00011 11111111223334444444333322 1
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhCCC
Q 008708 303 RPTHKAYNILLDAFAI--SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR--------RLKQDGF 372 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~ 372 (557)
.|. ..+.+++..+.+ .....++..++...-+..........-.++......|+++.|.+++. .+.+.+.
T Consensus 337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 337 SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 233 344444444332 22467778887777665433345667777888899999999999999 5555444
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 373 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIKPNQT----IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
.| .+...+...+.+.++.+.|..++.+.... .-.+... ++..++..-.+.|+-++|..+++++.+.. ++|.
T Consensus 416 ~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~ 492 (652)
T KOG2376|consen 416 LP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDT 492 (652)
T ss_pred Ch--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchH
Confidence 44 45566777888888888888888777641 1122223 33333344457899999999999999854 6788
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 447 KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.+...++.+|.+. +.+.|..+-+++.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 8999999999988 7888988887765
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.9e-09 Score=101.01 Aligned_cols=284 Identities=15% Similarity=0.124 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 008708 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 207 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (557)
..+......-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++++ ..|....+|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~----~yP~~a~sW 315 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD----LYPSKALSW 315 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCCcch
Confidence 4567777777777778888888888888877663 34555666666677777777776666666764 335556778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
.+++-.|...|+..+|.+.|.+....... -...|......|.-.|..
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~---------------------------------fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPT---------------------------------FGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCcc---------------------------------ccHHHHHHhHHhhhcchH
Confidence 88888787788888888888776543111 122344444444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
++|+..+..+-+. ++.....+.-+.--|.+.+.++.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..
T Consensus 363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 4444444443221 01111111112223344444444444444443221 234444444444444444444444444443
Q ss_pred HhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 368 KQD------GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 368 ~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
+.. ....-..+++.|+.+|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|...|.+.+.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~-- 517 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA-- 517 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--
Confidence 310 000123345555555555555555555555555431 33455555555555555555555555555554
Q ss_pred CCCCHHHHHHHHH
Q 008708 442 FPPDQKAKNILLS 454 (557)
Q Consensus 442 ~~p~~~~~~~l~~ 454 (557)
+.|+..+...+++
T Consensus 518 l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 518 LKPDNIFISELLK 530 (611)
T ss_pred cCCccHHHHHHHH
Confidence 4455544444444
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=2.1e-08 Score=99.20 Aligned_cols=288 Identities=14% Similarity=0.194 Sum_probs=157.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc---
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA--- 217 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 217 (557)
+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.. +.+..-|..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHhhhccc
Confidence 34455555555555443322 22223333444455555555555555555555321 22222222333333111
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008708 218 --GGYEKARKLFALMAERGVQQSTVTYNSLMSFETN-Y-KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 293 (557)
Q Consensus 218 --g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 293 (557)
.+.+....+|+++...-...+..-.-.|....|. + ..+...+..+...|++ .+|+.+-..|....+..-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 1344455555555443322121111111111111 1 2333444555555543 2455555555544444444444
Q ss_pred HHHHHHc----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 294 FEEMLDA----G----------VRPTH--KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 357 (557)
Q Consensus 294 ~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (557)
+...... + -+|+. .++.-+...|...|++++|+.++++.+... +..+..|..-...+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 4444321 0 12333 244556677778888888888888887663 22356777777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH------HH--HHHHHHHHhcCChhH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT------IF--TTIMDAYGKNKDFDS 429 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~l~~~~~~~g~~~~ 429 (557)
.+|.+.++.....+ .-|...-+-.+..+.+.|++++|.+++......+..|-.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888888888775 4577777777788888888888888888887655333221 12 334567888888888
Q ss_pred HHHHHHHHH
Q 008708 430 AVVWYKEME 438 (557)
Q Consensus 430 A~~~~~~m~ 438 (557)
|++-|....
T Consensus 324 ALk~~~~v~ 332 (517)
T PF12569_consen 324 ALKRFHAVL 332 (517)
T ss_pred HHHHHHHHH
Confidence 877766554
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=5.7e-09 Score=99.06 Aligned_cols=277 Identities=14% Similarity=0.075 Sum_probs=209.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008708 161 GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 240 (557)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 240 (557)
+..-+.........-|...+++.+..++.+.+++. .++...++-.-|.++...|+..+-..+=.++.+.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------- 307 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------- 307 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-------
Confidence 34557777777788888899999999999999863 2556666777777888889888888777777765
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008708 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 320 (557)
Q Consensus 241 ~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 320 (557)
.+....+|-++.-.|.-.|+..+|.+.|.+..... +.-...|..+...|+-.|
T Consensus 308 --------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 308 --------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred --------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcc
Confidence 23356778888888888899999999999876542 122347888888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 321 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
..+.|+..+...-+.- +-....+--+.--|.+.++.+.|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+
T Consensus 361 EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred hHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 9999998887765431 1011122234456778899999999999888764 6677888888888888899999999998
Q ss_pred HHHHC------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 401 KMRVN------GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 401 ~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
..+.. ...--..+++.+..+|.+.+++++|+..+++.+.. .+.+..++..+.-.+...|+++.|...+.+...
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 87721 11123556888889999999999999999999874 255778888888889999999999999988765
Q ss_pred CCCC
Q 008708 475 PNNE 478 (557)
Q Consensus 475 ~~~~ 478 (557)
.++.
T Consensus 518 l~p~ 521 (611)
T KOG1173|consen 518 LKPD 521 (611)
T ss_pred cCCc
Confidence 5443
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.6e-07 Score=92.69 Aligned_cols=379 Identities=12% Similarity=0.047 Sum_probs=263.1
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 008708 92 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP-SALTYQ 170 (557)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~ 170 (557)
+..++..|..|.-++...|+++.+.+.|++....- --....|+.+...|...|.-..|..+++.-......| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44578889999999999999999999999987543 2367789999999999999999999998876654334 344444
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHhHhc--cCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCC
Q 008708 171 IILKLFV-EANKFKEAEEVFMTLLDE--EKSPLKPDQKMFHMMIYMYKKA-----------GGYEKARKLFALMAERGVQ 236 (557)
Q Consensus 171 ~ll~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 236 (557)
..-..|. +.+..++++.+..+++.. ...+ ......|..+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444444 457788888888777751 1111 12234455555555433 1245678888888776543
Q ss_pred -CCHHHHHHHhcc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------
Q 008708 237 -QSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--------- 305 (557)
Q Consensus 237 -~~~~~~~~ll~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 305 (557)
|+...|-++-.+ .++.+.|....++..+.+...+...|..+.-.+...+++.+|+.+.+.....- |+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhh
Confidence 445555555444 68899999999999988767788999999999999999999999988776531 11
Q ss_pred ------------HHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHHH--------hCC------
Q 008708 306 ------------HKAYNILLDAFAI---------SG--------------MVDQARTVFKCMR--------RDR------ 336 (557)
Q Consensus 306 ------------~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~~~--------~~~------ 336 (557)
..|...++..+-. .| +..+|.+....+. ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 1122222222210 00 1111111111110 001
Q ss_pred ---CC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 337 ---CS--PD------ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 337 ---~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
.. |+ ...|......+.+.++.++|...+.+..... +.....|...+..+...|++++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 00 11 1234455667788889999988888877653 667778888888999999999999999998875
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVV--WYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
+ +.+..+..++..++.+.|+..-|.. ++.++.+.+ +-++..|..+...+.+.|+.+.|.+.+........
T Consensus 714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 3 3346788899999999999888888 999999855 55778999999999999999999999987664443
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6.9e-10 Score=97.90 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc---
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS--- 247 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--- 247 (557)
.+.++|.+.|.+.+|++.++..++. .|-+.||..|-.+|.+..+.+.|+.+|.+-.+. .|..+||..-+.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 4445555555555555555555421 234445555555555555555555555544432 122222211100
Q ss_pred -ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 248 -FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 248 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
..++.+++.++|+...+.. +.++.....+...|.-.++++-|+.+|+++++.|+ .++..|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 1122222222333222221 12334444444455555555555555555555553 34455555555555555555555
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 327 TVFKCMRRDRCSPDI--CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
..|.+....--.|+. ..|..+....+..|++..|.+.|+-.+..+ +.+...++.|.-.-.+.|+++.|..+++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 555554433222221 234444444444455555555555444433 3334445555444455555555555554444
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=6.5e-10 Score=110.37 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=60.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC
Q 008708 118 VLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK 197 (557)
Q Consensus 118 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 197 (557)
++-.+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+...+++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4445666677777777777777777777777666 7776666656666666777776666666654433
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 198 SPLKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
.|...+|..|..+|...|+...
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHH
Confidence 4566677777777777777554
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=1.5e-09 Score=107.93 Aligned_cols=243 Identities=16% Similarity=0.162 Sum_probs=150.3
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 92 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
+.||..+|..+|.-|+..|+++.|- +|.-|.-+..+.+...++.++.+....++.+.+. .|.+.||..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 6677788888888888888888887 8887777776777778888887777777766554 567778888
Q ss_pred HHHHHHHcCCHHH---HHHHHHHhHhc------------------cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 172 ILKLFVEANKFKE---AEEVFMTLLDE------------------EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 172 ll~~~~~~g~~~~---A~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
|..+|...|++.. .++.+..+... ...+.-||. .+++....-.|-++.+++++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888887654 22212111110 001111221 22333334445555566555544
Q ss_pred HHcCC-CCCHHHHHHHhcc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 231 AERGV-QQSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA 308 (557)
Q Consensus 231 ~~~~~-~~~~~~~~~ll~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 308 (557)
..... .|..+ ++.. ...+....++........-.|+..+|..++..-...|+.+.|..++..|.+.|++.+.+-
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred CcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 32211 11111 1222 223344444444444332257777777777777778888888888888888877777776
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
|..|+-+ .++...+..+++-|...|+.|+..|+..-+..+..+|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666544 66777777777777777888887777776666666444
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=2.3e-06 Score=82.87 Aligned_cols=367 Identities=13% Similarity=0.173 Sum_probs=187.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------------hHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR----------------------YKNAEAIFR 155 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~ 155 (557)
.|++|.+-|.+.|.+++|..+|++.... ..++.-+..+.++|+.-.. ++-.+.-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4566777777777777777777776654 2344555556665543211 111111222
Q ss_pred HHHhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 008708 156 RMQSSGP-----------RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP--LKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 156 ~m~~~~~-----------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
.+....+ +-+...|..-.. ...|+..+-...|.+++..-... ...-...|..+...|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 2221110 001111111111 12355666666676666531111 11123567888888888999999
Q ss_pred HHHHHHHHHHcCCCCCHH---HHHHHhc---ccCCHHHHHHHHHHHHHCC-----------CCC------CHHHHHHHHH
Q 008708 223 ARKLFALMAERGVQQSTV---TYNSLMS---FETNYKEVSKIYDQMQRAG-----------LQP------DVVSYALLIN 279 (557)
Q Consensus 223 A~~~~~~~~~~~~~~~~~---~~~~ll~---~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~ 279 (557)
|..+|++..+...+--.. +|..... -..+++.|.++.+.....- .++ +...|...+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 999998887754332211 1211111 1345666666665543210 011 2233555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH---cC
Q 008708 280 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI-CSYTTMLSAYVN---AS 355 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g 355 (557)
.--..|-++....+|+++++..+. ++...-.....+-.+.-++++.+++++-...-..|+. ..|+..+.-+.+ ..
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 556667777777788877765432 2222222222334445566666666655444333443 245544444433 23
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHC---------------------CCCcCHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIK--GYAKVNNLEKMMEIYDKMRVN---------------------GIKPNQT 412 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~---------------------~~~p~~~ 412 (557)
.++.|..+|++.++ |.+|...-+-.|+- .=-+.|....|+.+|+++... |++.+..
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 56677777777666 44443322211211 112345555566665554321 2222222
Q ss_pred HHHHHHH----------------HHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 413 IFTTIMD----------------AYGKNKDFDSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 413 ~~~~l~~----------------~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+|...|. .=.+.|..+.|..++....+. .+| +...|...-..=.++|+-+...++++.
T Consensus 644 iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keMLRi 719 (835)
T KOG2047|consen 644 IYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRI 719 (835)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3322222 224567777887777766552 244 446777777788888887777777754
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.8e-08 Score=89.26 Aligned_cols=307 Identities=12% Similarity=0.107 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC
Q 008708 127 YAPSVVSHTALMEAYGR--GGRYKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 203 (557)
Q Consensus 127 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (557)
.+|+..+...-+.+++. .++...|...+-.+.... .+-|......+.+.+...|+.++|+..|++..- ..|+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-----~dpy 264 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-----ANPD 264 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-----CChh
Confidence 34444444444444333 455555555554443332 445667777888888888888888888888752 2233
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008708 204 Q-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-Q-STVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 280 (557)
Q Consensus 204 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (557)
. .......-.+...|+++....+...+....-. . ..+.-..++....++..|+.+-+..++... .+...|-.-...
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~l 343 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRL 343 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHH
Confidence 2 22223334455677777777777666543200 0 111111222234667777777777776542 255666666778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-HcCCHH
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML-SAYV-NASDME 358 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~ 358 (557)
+...+++++|.-.|+..+... +.+..+|..|+.+|...|.+.+|..+-+...+. .+.+..+...+. ..|. ...--+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 889999999999999987652 456789999999999999999998877765543 133555555442 2222 223357
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+|.++++...... |.-....+.+...|...|..+.++.++++.+.. .||....+.+.+.+...+.+++|...|..++
T Consensus 422 KAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 422 KAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8999999877653 334567788899999999999999999998874 7899999999999999999999999999998
Q ss_pred hCCCCCCH
Q 008708 439 SCGFPPDQ 446 (557)
Q Consensus 439 ~~~~~p~~ 446 (557)
. +.|+.
T Consensus 499 r--~dP~~ 504 (564)
T KOG1174|consen 499 R--QDPKS 504 (564)
T ss_pred h--cCccc
Confidence 7 44543
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=1.5e-07 Score=93.33 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
++..+...|...|++++|+.++++.++. .|+ +..|..-...+-+.|++.+|...++...... .-|-..=+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 4456677788888888888888888876 344 5677777888888888888888888887654 22555556667778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVIT--------YGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
.++|+.++|.+++......+..|-... ..-.+.+|.+.|++..|++.|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888776553332211 24456778888888888877766654
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=2.7e-06 Score=82.50 Aligned_cols=199 Identities=10% Similarity=0.117 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCS----------- 338 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------- 338 (557)
.|..+...|-..|+++.|..+|++..+...+.- ..+|..-..+-.+..+++.|+++.+........
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 456666677777777777777777665432211 224444445555566667777666654322111
Q ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-H
Q 008708 339 P------DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-Q 411 (557)
Q Consensus 339 ~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~ 411 (557)
+ +...|...+...-..|-++....+|+++.+..+. ++...-.....+-...-++++.++|++-+..=-.|+ .
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1223444444444556666677777777665433 222222222333444556677777766554322344 4
Q ss_pred HHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH-HHH-HHHHHHhhcCCHHHHHHHHHhcC
Q 008708 412 TIFTTIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQK-AKN-ILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 412 ~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~-~~~-~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
..|+..+.-+.+ .-+++.|..+|+++++ |.+|... ++. .....=.+.|-...|..+++++.
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567776665543 3467889999999988 6676553 322 22233356688888888887754
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.9e-11 Score=78.53 Aligned_cols=47 Identities=38% Similarity=0.754 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
|..+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=5.2e-11 Score=77.92 Aligned_cols=50 Identities=34% Similarity=0.785 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 374 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 374 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877764
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=8e-07 Score=79.81 Aligned_cols=384 Identities=13% Similarity=0.102 Sum_probs=240.0
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 146 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 146 (557)
+..+...+++.-|..++++....+.- -...+-..+..++.+.|++++|...+..+.+.. .|+...+-.|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 44455556777788888776654421 122444568889999999999999999988754 5677888888888888999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
+.+|..+..+. +.++-.-..++....+.|+-++-..+.+.+.+ ...---.|.......-.+.+|+++
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD--------~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD--------TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh--------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999887664 33666777788888888998888887777742 223445566666667789999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhcc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------
Q 008708 227 FALMAERGVQQSTVTYNSLMSF----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEE------ 296 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------ 296 (557)
|......+ |.....|..+.. ..-++-+.++++-..+.- +-+....|..+....+.=+-..|..-.+.
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 99998753 344444443332 233455555655555542 22333333333222222111111111111
Q ss_pred --------HHHcC------------CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 297 --------MLDAG------------VRP-----THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 297 --------~~~~~------------~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
+.+.+ +-| -+..-..|+--|.+.+++.+|..+.+++. +.++.-|-.-.-.+
T Consensus 251 ~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVF 326 (557)
T ss_pred ccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHH
Confidence 11111 011 11233445556788999999998887665 22333333222233
Q ss_pred HHcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 352 VNAS-------DMEGAEKFFRRLKQDGFVPNVI-TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 352 ~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
+..| ...-|.+.|+-.-+++..-|.. --.++..++.-..++++.+-++..+... +..|....-.+..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHH
Confidence 3333 3455666666554443332221 2234556666677899999988888765 33344444457889999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 424 NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.|.+.+|.++|-......++.+......|.+.|.+.+.++.|..++-+..
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 99999999999887654444344445667788999999999998886654
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=4.1e-08 Score=82.96 Aligned_cols=198 Identities=13% Similarity=0.056 Sum_probs=168.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
+...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..... +.+....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667888999999999999999999874 4456689999999999999999999999988764 346678899999999
Q ss_pred HcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 008708 353 NASDMEGAEKFFRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
..|++++|...|++..... ..--..+|..++-+..+.|+.+.|...|++.++.. +......-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988753 23345688899999999999999999999999864 344677888888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 432 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
.+++.....+ .++...+...++...+.|+.+.+.++-..+.+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998865 58899999999999999999999887766654
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=7.5e-08 Score=90.23 Aligned_cols=217 Identities=12% Similarity=0.088 Sum_probs=127.4
Q ss_pred chHHHHHHHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008708 75 KWNVVSEVLEWLRIQSWWDF--NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 152 (557)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 152 (557)
..+.+..-+..+.......+ ....|..+...|.+.|+.++|...|++..+.. +.+..+|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34445555555554332211 13457777888888888888888888888764 4467888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 153 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 153 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.|++..+..+. +..++..+..++...|++++|.+.|+..++. .|+..........+...++.++|...|.+...
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776443 5667777777788888888888888888753 23222122222233445678888888866543
Q ss_pred cCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCC---C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 233 RGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAG---L---QPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 233 ~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
.. .++...+.......++...+ ..+..+.+.. + +.....|..+...+.+.|++++|+..|++..+.
T Consensus 194 ~~-~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KL-DKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hC-CccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21 22222222211223333322 2333332210 0 011234555666666666666666666666554
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=7.1e-08 Score=90.36 Aligned_cols=171 Identities=12% Similarity=0.052 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...|+.+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...|+...+.. |+.........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~ 173 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLY 173 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34556666666666666666666666665532 2234455556666666666666666666665542 22111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCc-CHHHHHHHHHHHHh
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN---G--IKP-NQTIFTTIMDAYGK 423 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~--~~p-~~~~~~~l~~~~~~ 423 (557)
.+...+++++|...|.+..... .|+...+ .......|+...+ +.+..+.+. . +.| ....|..+...+.+
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~ 248 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLS 248 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 2234456666666665544321 2222211 1222234444333 233333321 0 011 23467777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 424 NKDFDSAVVWYKEMESCGFPPDQKAK 449 (557)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~~p~~~~~ 449 (557)
.|++++|...|++..+.+ +|+..-+
T Consensus 249 ~g~~~~A~~~~~~Al~~~-~~~~~e~ 273 (296)
T PRK11189 249 LGDLDEAAALFKLALANN-VYNFVEH 273 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CchHHHH
Confidence 777888887777777643 3344433
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=1.1e-07 Score=80.47 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
...|.-.|.+.|++..|..-+++.++.. +.+..+|..+...|-+.|..+.|.+.|++..+..+. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4457777888888888888888888774 335667888888888888888888888888776544 66677777777788
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
.|++++|.+.|++++..+ ....-..+|..+.-+..+.|+++.|...|++.++.
T Consensus 116 qg~~~eA~q~F~~Al~~P--~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 116 QGRPEEAMQQFERALADP--AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred CCChHHHHHHHHHHHhCC--CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 888888888888887632 33334456777777777888888888888777765
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=4.1e-06 Score=81.39 Aligned_cols=384 Identities=14% Similarity=0.100 Sum_probs=206.8
Q ss_pred hccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008708 72 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 151 (557)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 151 (557)
.-+++++|.+.+.-+.+-. +.|...+.-|.-.=++.|+++..........+.. +.....|..++.++.-.|+...|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555665555554433 2344555544444455555555555555554442 223455666666666667777777
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 152 AIFRRMQSSG-PRPSALTYQIIL------KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKAR 224 (557)
Q Consensus 152 ~~~~~m~~~~-~~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 224 (557)
.+++...+.. -.|+...|.... ....+.|.++.|.+.+..-. ..+......-..-...+.+.+++++|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e----~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE----KQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh----hHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 7766665543 234444443322 23445566666666554432 111112222233455666777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhc-ccCCHH---HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 225 KLFALMAERGVQQSTVTYNSLMS-FETNYK---EVS-KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~---~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
.++..++.++ ||...|...+. +.|.+. ++. .+|....+. ++.....-..=++......-.+..-.++..+.+
T Consensus 240 ~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 240 KVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 7777776653 45554444332 233221 111 333333222 110000000011111112223344455556666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHHHcCCHHHHHHH
Q 008708 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR----RDR----------CSPDICS--YTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~ 363 (557)
.|+++ ++..+...|-.-...+-..++...+. ..+ -+|.+.. +..++..+-+.|+++.|..+
T Consensus 317 Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 66543 23333333322111111111111111 111 1455544 45677889999999999999
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 364 FRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 364 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
++....+ .|+. ..|..-.+.+...|.+++|..++++..+.+ .||...-..-+.-..++++.++|..+.......|.
T Consensus 394 Id~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 394 IDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9998876 4554 467777789999999999999999999875 56666665777777899999999999998887664
Q ss_pred CC--C---HH-HHHHHH--HHHhhcCCHHHHHHHHHh
Q 008708 443 PP--D---QK-AKNILL--SLAKTADERNEANELLGN 471 (557)
Q Consensus 443 ~p--~---~~-~~~~l~--~~~~~~g~~~~a~~~~~~ 471 (557)
.. + .. .|-.+- .+|.+.|++..|.+-+..
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 11 1 11 233222 478888888777755533
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=1e-06 Score=85.77 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=102.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-APS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
...|..+...+...|+.+.+.+.+....+... .++ ..........+...|++++|.+.+++.....+. +...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 34455555566666666666665555444321 111 112222333455667777777777776665332 3333331 1
Q ss_pred HHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 008708 174 KLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 249 (557)
Q Consensus 174 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 249 (557)
..+.. .+....+.+.+... ....+........+...+...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------------- 144 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------------- 144 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 12222 23333333333321 11222223344455556666677777776666666541
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHcCCHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTH--KAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~ 326 (557)
+.+...+..+..++...|++++|..++++...... .|+. ..|..+...+...|++++|.
T Consensus 145 ------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 145 ------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred ------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 12344556666667777777777777776655321 1221 23445666666777777777
Q ss_pred HHHHHHH
Q 008708 327 TVFKCMR 333 (557)
Q Consensus 327 ~~~~~~~ 333 (557)
.++++..
T Consensus 207 ~~~~~~~ 213 (355)
T cd05804 207 AIYDTHI 213 (355)
T ss_pred HHHHHHh
Confidence 7777664
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5e-07 Score=85.78 Aligned_cols=396 Identities=12% Similarity=0.058 Sum_probs=217.2
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 148 (557)
....++++.|...|...+...+ .|...|..-..+|...|++++|++=-.+-.+. .|+ ...|.....++.-.|+++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4456777777777777776653 46777777777788888877777766555554 344 557777777777777888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC-------
Q 008708 149 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK---EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG------- 218 (557)
Q Consensus 149 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 218 (557)
+|+..|.+-++..+. +...+.-+..++....... .--.++..+...+..........|..++..+-+.-
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 887777776665322 4555555555541110000 00001111100000000000011122211111100
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhccc-CCHH----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008708 219 GYEKARKLFALMAERGVQQSTVTYNSLMSFE-TNYK----EVSKIYDQMQR-AGLQPDVVSYALLINAYGKARREEEALA 292 (557)
Q Consensus 219 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~----~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 292 (557)
..+......-.+...+.. ....-....... .... ........+.. .....-..-...+.++..+..+++.|++
T Consensus 167 ~d~r~m~a~~~l~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDEL-LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred ccHHHHHHHHHHhcCccc-cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000000000000000000 000000000000 0000 00000000000 0000011224567777778888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHH
Q 008708 293 VFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY-------TTMLSAYVNASDMEGAEKFFR 365 (557)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~ 365 (557)
.+....+.. .+..-++....+|...|.+......-....+.|.. ...-| ..+..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888887753 44445566666788888777776666655544321 11122 223345666777888888888
Q ss_pred HHHhCCCCCCHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 366 RLKQDGFVPNVIT-------------------------YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 366 ~m~~~~~~p~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
+.+.....|+..+ ...-+..+.+.|++..|+..|.++++.. +-|...|..-.-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 7765544443322 1223566778899999999999999875 6678999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
|.+.|.+..|+.-.+..++. .|+ ...|..-+.++....+++.|.+.+.+..+.++
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999998888874 444 35666667778888899999999998876664
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=7.5e-06 Score=78.81 Aligned_cols=397 Identities=14% Similarity=0.106 Sum_probs=226.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH---
Q 008708 61 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL--- 137 (557)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l--- 137 (557)
...+..+.+....+.+++|.+....+.... +.+...+..-+-++.+.++|++|+.+.+.-.. ..+++..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHH
Confidence 456777788888899999999999988765 45677888889999999999999976654332 1222222
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC-----------------
Q 008708 138 -MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP----------------- 199 (557)
Q Consensus 138 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----------------- 199 (557)
.-+..+.++.++|+..++-. -+.+..+...-...+.+.|++++|.++|+.+.+.....
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 23445789999999998832 12244577777788999999999999999996532100
Q ss_pred --------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC------CH----HHHHHHhcccCCH
Q 008708 200 --------LKP--DQKMFHMMIYMYKKAGGYEKARKLFALMAERG-------VQQ------ST----VTYNSLMSFETNY 252 (557)
Q Consensus 200 --------~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~------~~----~~~~~ll~~~~~~ 252 (557)
..| +-..+....-.+...|++.+|+++++.....+ -.. .. +-..-++...|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 011 11222233445556677777777777763211 000 00 0111122235777
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHcC-------C---CCCHHHH-HHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVV----SYALLINAYGKARREE-EALAVFEEMLDAG-------V---RPTHKAY-NILLDAF 316 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~~~~~~-------~---~~~~~~~-~~li~~~ 316 (557)
.+|..+|..+++..+ +|.. .-|.|+..-....-++ .++..++...... + ....... +.++..|
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766543 2332 2222222211111111 1111111111000 0 0001111 2222222
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV--NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 394 (557)
. +..+.+.++-.... +..|. ..+.+++..+. +......+.+++...-+....-...+.-.++......|+++.
T Consensus 320 t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred h--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2 22233333332222 11233 33444444332 223477788888777665322234566677788889999999
Q ss_pred HHHHHH--------HHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHhhcC
Q 008708 395 MMEIYD--------KMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQ----KAKNILLSLAKTAD 460 (557)
Q Consensus 395 a~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~----~~~~~l~~~~~~~g 460 (557)
|.+++. .+.+.+. .+.+...+...+.+.++-+.|..++.+.+.. .-.+.. .++.-+...-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 5544433 3456677777888888888888888777531 011221 34444455556789
Q ss_pred CHHHHHHHHHhcCCCCC
Q 008708 461 ERNEANELLGNFNHPNN 477 (557)
Q Consensus 461 ~~~~a~~~~~~~~~~~~ 477 (557)
+.++|..+++++.+.++
T Consensus 473 ~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNP 489 (652)
T ss_pred chHHHHHHHHHHHHhCC
Confidence 99999999999886554
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-05 Score=79.80 Aligned_cols=370 Identities=15% Similarity=0.090 Sum_probs=244.8
Q ss_pred hHHHHHHH-HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008708 60 KDLVLGTL-VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTAL 137 (557)
Q Consensus 60 ~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l 137 (557)
+..++..+ ..+...|++..+-+.|+....... -....|+.+...|...|.-..|..+++.-....-.|+ ...+-..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 33444333 356667889999999988876531 2356788999999999999999999988765532243 4444444
Q ss_pred HHHHHh-cCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhHhccCCCCC
Q 008708 138 MEAYGR-GGRYKNAEAIFRRMQSS--GP--RPSALTYQIILKLFVEA-----------NKFKEAEEVFMTLLDEEKSPLK 201 (557)
Q Consensus 138 i~~~~~-~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 201 (557)
-..|.+ .+..+++++...+.... +. ...+..|..+.-+|... ....++.+.+++.++.+ +
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d----~ 475 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD----P 475 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC----C
Confidence 444444 57888888888777662 11 12344555555454422 23456778888887643 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008708 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLI 278 (557)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 278 (557)
.|+.+...+.--|+..++++.|.+...+..+.+...+...|.. ++++.+++.+|+.+.+.....-.. |-.....-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhh
Confidence 3334444455567888999999999999998766666666654 456788999999888766543110 000000001
Q ss_pred HHHHhcCCHHHHHHHHHHHH---------------------------------------------------HcC------
Q 008708 279 NAYGKARREEEALAVFEEML---------------------------------------------------DAG------ 301 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~---------------------------------------------------~~~------ 301 (557)
..-...++.++++.....++ ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 11111222222222111110 000
Q ss_pred ---CC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 302 ---VR--PT------HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD 370 (557)
Q Consensus 302 ---~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (557)
+. |+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 00 11 1124455566777788888887777766542 445667777778888999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 371 GFVPNVITYGTLIKGYAKVNNLEKMME--IYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 371 ~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+ |.++.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|-.+...+.+.|+.+.|...|....+
T Consensus 714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 5 5567788999999999998888887 999999876 56799999999999999999999999998876
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=2.3e-06 Score=83.33 Aligned_cols=202 Identities=12% Similarity=0.014 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDI--CSYTTM 347 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~l 347 (557)
......+...+...|++++|...+++..+.. +.+...+..+..++...|++++|..++++...... .++. ..|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3455567778899999999999999999864 44567888899999999999999999999886532 2332 345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH--H-HHHHHCC-CCcCHHHHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-VPNVITY-G--TLIKGYAKVNNLEKMMEI--Y-DKMRVNG-IKPNQTIFTTIMD 419 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~m~~~~-~~p~~~~~~~l~~ 419 (557)
...+...|++++|..++++...... .+..... + .++.-+...|....+.+. + ....... .............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 8899999999999999999865432 1222211 1 333344445543333332 1 1111110 0111222235667
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFP-------P-DQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
++...|+.+.|..+++.+...... . ..........++...|+.++|.+.+....
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999988652211 0 11122233346778999999999998765
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.3e-06 Score=75.15 Aligned_cols=199 Identities=14% Similarity=0.146 Sum_probs=124.3
Q ss_pred CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 57 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA 136 (557)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 136 (557)
.++...+.+++.++.+-.++..|.+++..-.+..+ .+....+.|..+|....++..|...++++... .|...-|..
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 34555566666666666778888888776666542 35667778888888888888888888888765 355555543
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 008708 137 -LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL--KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 213 (557)
Q Consensus 137 -li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (557)
-...+.+.+.+..|+++...|... |+...-..-+ ....+.+++..+..+.++.-. .-+..+.+...-.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------en~Ad~~in~gCl 153 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------ENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC------CCccchhccchhe
Confidence 245566778888888887776432 2221111111 223345677777777766621 2344455555666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHCCCC
Q 008708 214 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 214 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~~~~~~~~~~~~ 268 (557)
..+.|+++.|.+-|+...+.+--.....||..+.. .+++..|++...++...|+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 67788888888888877765444445556655554 35566666666666666543
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=4.2e-06 Score=73.58 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=198.0
Q ss_pred hhChHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhhHH-HHHHHHHhcCChhHHHH
Q 008708 40 EVGSAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL-MLITAYGKQGDFNKAEK 117 (557)
Q Consensus 40 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~ 117 (557)
+++++++.+.+. ....+.+ ..-++++. .+....++..|...++.+.... |...-|. --...+.+.+.+..|+.
T Consensus 25 ry~DaI~~l~s~-~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 25 RYADAIQLLGSE-LERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hHHHHHHHHHHH-HhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHhcccHHHHH
Confidence 577888888742 3333333 23344443 4456678889999999887654 3333333 24667788899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 008708 118 VLSFMNKKGYAPSVVSHTALM--EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 195 (557)
Q Consensus 118 ~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 195 (557)
+...|... |+...-..-+ ......+++..+..+.++.... .+..+.+.......+.|+++.|.+-|+..++
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlq- 172 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQ- 172 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHh-
Confidence 99888753 2222211112 2334567888888888876432 3555666666667789999999999999986
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc-------ccCCHHHHHHHHHHHHHCCCC
Q 008708 196 EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS-------FETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~a~~~~~~~~~~~~~ 268 (557)
-+|..|- ..||..+ +..+.|+++.|++...++.++|++..+. ++.-+. ..|+. .. |...
T Consensus 173 -vsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt---~~----lh~S--- 238 (459)
T KOG4340|consen 173 -VSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNT---LV----LHQS--- 238 (459)
T ss_pred -hcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccch---HH----HHHH---
Confidence 4565553 3555444 4557789999999999999988653221 111000 01110 00 0000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
.-+..+|.-...+.+.|+++.|.+.+-+|.-+ ....|++|...+.-.= ..+++....+-+.-+.... +-...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 01234555556677888999998888887432 2345666665544222 2344444454455555443 3455788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAK-VNNLEKMMEIYDKMR 403 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 403 (557)
+-.|++..-++.|-+++.+-..... -.+...|+ |++++.. .-..+++.+-+..+.
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8889998888888887764222111 12333333 3444433 345666666555544
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.93 E-value=1.1e-05 Score=89.12 Aligned_cols=342 Identities=12% Similarity=0.046 Sum_probs=210.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC---CCCC--HHHHHHHHHH
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP---LKPD--QKMFHMMIYM 213 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~--~~~~~~l~~~ 213 (557)
..+...|++..+..++..+.......++.........+...|++++|...+..+.+.-... ..+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445567877777777665211111122223344455667899999999988775421110 0111 1223334556
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHH---HhcccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 008708 214 YKKAGGYEKARKLFALMAERGVQQSTV----TYNS---LMSFETNYKEVSKIYDQMQRA----GLQ-PDVVSYALLINAY 281 (557)
Q Consensus 214 ~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~---ll~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~ 281 (557)
+...|+++.|...++.....-...+.. ..+. .....|++++|...+++.... +.. +...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 678999999999999887632222211 1111 112368999999888877642 111 1123456677788
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHH
Q 008708 282 GKARREEEALAVFEEMLDA----GVR--P-THKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSP--DICSYTTMLSA 350 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~li~~ 350 (557)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 9999999999998887542 211 1 2234555666777889999999999887543 1112 23445556678
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CCCCCHH--H--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHH
Q 008708 351 YVNASDMEGAEKFFRRLKQD--GFVPNVI--T--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMDAY 421 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~--~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~ 421 (557)
+...|++++|...+...... ....... . ....+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88999999999999887542 1111111 1 11123445568899999998877553211111 11244567788
Q ss_pred HhcCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCC
Q 008708 422 GKNKDFDSAVVWYKEMES----CGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (557)
...|++++|...+++... .|..++. .+...+..++.+.|+.++|...+.+..+.....+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 899999999999998865 2333322 3566677789999999999999988775444333
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=7.5e-07 Score=88.41 Aligned_cols=326 Identities=15% Similarity=0.191 Sum_probs=196.2
Q ss_pred CHhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------CC
Q 008708 95 NEMDFLMLIT--AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-G--------PR 163 (557)
Q Consensus 95 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~ 163 (557)
|+.+--.+++ .|...|+++.|.+-.+.+. +...|..|.+.|.+..+.+-|.-.+..|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444443 3556788888877766654 4567888888888888777776666555321 0 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008708 164 PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN 243 (557)
Q Consensus 164 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 243 (557)
|+ .+-..+.-.....|.+++|+.+|.+... |..|=..|-..|.+++|.++-+.-....++.+...|.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR------------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 21 2222233344577888888888887742 4445556777788888887765544434444555555
Q ss_pred HHhcccCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 244 SLMSFETNYKEVSKIYDQM----------QRAG---------LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 244 ~ll~~~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
.-+.+.++.+.|++.|+.. .... -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 6666667777777666532 1111 112444555566666677788888887776643
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
|-+++...|-.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+... |...|+
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 4456666777888888877765433 566667788888888999888888887653 222233
Q ss_pred HHHHcC---------------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHhCC
Q 008708 385 GYAKVN---------------NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYK--------EMESCG 441 (557)
Q Consensus 385 ~~~~~g---------------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~ 441 (557)
.|-..+ +.-.|.++|++.- . -....+..|-++|.+.+|+++-- +++..+
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 222222 2222333333321 1 12334456777777777766531 222233
Q ss_pred CC--CCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 442 FP--PDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 442 ~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+. .|+...+.-...+....+++.|..++-.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33 3667777778888888888888877744
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.4e-05 Score=71.91 Aligned_cols=390 Identities=15% Similarity=0.070 Sum_probs=213.0
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHH--HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTL--VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKV 118 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 118 (557)
++.|+..|.. ....-|+..++.+- -.+..++++..|++=-...++..+ .=+.-|+.+..++.-.|++++|+.-
T Consensus 18 ~~~ai~~~t~---ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p--~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 18 FETAIRLFTE---AIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP--DWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred HHHHHHHHHH---HHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC--chhhHHHHhHHHHHhcccHHHHHHH
Confidence 4456666652 22333334333322 245677889888875555554431 1256799999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHhC---CCCCCHHHHHHHHHHHHHc-------CCHHHH
Q 008708 119 LSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA---EAIFRRMQSS---GPRPSALTYQIILKLFVEA-------NKFKEA 185 (557)
Q Consensus 119 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~-------g~~~~A 185 (557)
|.+-++.. +.+...++.+..++.......+. -.++..+... .......+|..++..+-+. .+.+..
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99988874 44677888888887221111000 0111111110 0001112233333222111 111111
Q ss_pred HHHHHHhHhcc------------CCCCCC------------CH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 186 EEVFMTLLDEE------------KSPLKP------------DQ----------KMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 186 ~~~~~~~~~~~------------~~~~~~------------~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
.+..-.+...+ .....| |. .-...++++..+..+++.|++.+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12111111100 001111 00 124456777777888888888888877
Q ss_pred HcCCCCCHHHHHHHhcc----cCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008708 232 ERGVQQSTVTYNSLMSF----ETNYKEVSKIYDQMQRAGLQ------PDVVSYALLINAYGKARREEEALAVFEEMLDAG 301 (557)
Q Consensus 232 ~~~~~~~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 301 (557)
+.. ...+|.....+ .+.+.+....-....+.|.. .=...+..+..+|.+.++++.++..|.+.+...
T Consensus 252 el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 252 ELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred hHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 653 23333332221 22222222222222221111 001122234456666777788888888766543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 380 (557)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (557)
..|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|+..|.+++... |-|...|.
T Consensus 329 Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 329 RTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred cCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 33332 222233344444443333222 221 112233567788899999999999998886 77888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
...-+|.+.|.+..|+.-.+..++.. ++....|..=..++....+++.|.+.|++.++. .|+..-+.--+.
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 99999999999999999888888753 334566666666777788899999999999873 465544433333
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.88 E-value=7.7e-05 Score=71.29 Aligned_cols=409 Identities=14% Similarity=0.205 Sum_probs=242.6
Q ss_pred CCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 55 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 134 (557)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 134 (557)
.+|.+-+.+ ..|++.......+++++.++.+... ++..+..|..-+..-.+..+++..+++|.+.+.. ..+...|
T Consensus 15 ~nP~di~sw-~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSW-SQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLW 89 (656)
T ss_pred cCCccHHHH-HHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHH
Confidence 344443433 4444444455888888888888766 3456778888888888889999999999888765 3467788
Q ss_pred HHHHHHHHhc-CChHH----HHHHHHHH-HhCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHhHhccCC
Q 008708 135 TALMEAYGRG-GRYKN----AEAIFRRM-QSSGPRP-SALTYQIILKL---------FVEANKFKEAEEVFMTLLDEEKS 198 (557)
Q Consensus 135 ~~li~~~~~~-g~~~~----A~~~~~~m-~~~~~~~-~~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~~~~ 198 (557)
..-++--.+. |+... ..+.|+-. .+.|..+ +...|+..+.- +....+.+...++|++++..
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t--- 166 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT--- 166 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC---
Confidence 7777554432 33222 22333332 3444333 23345555543 33445677788888888732
Q ss_pred CCCCCHHHHHHHHH------HH-------HHcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHhcc
Q 008708 199 PLKPDQKMFHMMIY------MY-------KKAGGYEKARKLFALMAE--RGVQQSTVT---------------YNSLMSF 248 (557)
Q Consensus 199 ~~~~~~~~~~~l~~------~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------~~~ll~~ 248 (557)
+..-=...|+-... .. -+...+..|.++++++.. +|+.....+ |..++.-
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 11111223333211 11 112345567777766652 332211111 3222221
Q ss_pred ---------cCC--HHHHHHHHHHHHH-CCCCCCHHH-HH----HHHHHHHhcCC-------HHHHHHHHHHHHHcCCCC
Q 008708 249 ---------ETN--YKEVSKIYDQMQR-AGLQPDVVS-YA----LLINAYGKARR-------EEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 249 ---------~~~--~~~a~~~~~~~~~-~~~~~~~~~-~~----~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~ 304 (557)
.+. ...+.=++++... .+..|+... +. .....+...|+ -+++..+++.....-...
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 011 1112222332221 223333211 01 11122333343 345566666554432223
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 008708 305 THKAYNILLDAFAISG---MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP-NVITYG 380 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 380 (557)
+..+|..+.+---..- ..+....++++........-..+|...++.-.+..-+..|..+|.++.+.+..+ +..+++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3334444333211111 255556666666544222233567888888888889999999999999987666 778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhh
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ--KAKNILLSLAKT 458 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~ 458 (557)
+++..||. ++.+-|.++|+.-+++ +..++..-...++-+...++-..|..+|++.+..+++|+. .+|..++..=..
T Consensus 407 A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 88887774 7889999999987654 2344555577888888999999999999999988777765 689999999999
Q ss_pred cCCHHHHHHHHHhcC
Q 008708 459 ADERNEANELLGNFN 473 (557)
Q Consensus 459 ~g~~~~a~~~~~~~~ 473 (557)
-|+...+.++-++..
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998887754
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=5.6e-07 Score=86.23 Aligned_cols=256 Identities=15% Similarity=0.116 Sum_probs=149.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 220 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (557)
+.+.|.+.+|.-.|+..++..+. +...|..|....+..++-..|+..+.++++.+ +.+..+.-+|.-.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld----P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD----PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC----CccHHHHHHHHHHHhhhhhH
Confidence 34556666666666666665444 56666666666666666666666666666432 33455566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HH
Q 008708 221 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM-LD 299 (557)
Q Consensus 221 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 299 (557)
..|+..++..+...++ |..+... + ++...-.. ..+.....+....++|-++ ..
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a-----------------~--~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSA-----------------G--ENEDFENT--KSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhcccc-----------------C--ccccccCC--cCCCCHHHHHHHHHHHHHHHHh
Confidence 6666666655543110 0000000 0 00000000 0111111222333333333 34
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 008708 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN-VIT 378 (557)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 378 (557)
.+..+|+.+...|.-.|.-.|++++|+..|+..+... +-|...||-|...++...+.++|+..|++.++. .|. +.+
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~ 500 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRV 500 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeee
Confidence 4444677777778778888888888888888887654 446778888888888888888888888888875 444 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVN---------GIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
...|.-+|...|.+++|.+.|-.++.. ...++..+|..|=.++.-.++.+.+
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 556777888888888888887766531 1112234555555555555555533
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=3.8e-05 Score=69.10 Aligned_cols=313 Identities=11% Similarity=0.104 Sum_probs=199.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL---MEAYGRGGRYKNAEAIFRRMQSSGPRPSALT-YQIILKLF 176 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~ 176 (557)
-|...+...|++..|+.-|....+. |+..|.++ ...|...|+-.-|+.-+.+.++ .+||-.. -..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 4666677777777777777776654 33333333 3456667777777777776665 3444322 12223456
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 256 (557)
.+.|.++.|..-|+.+++.. |+. +....++.+.--.++-..+..+++.. ...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~-----~s~---~~~~eaqskl~~~~e~~~l~~ql~s~-------------~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE-----PSN---GLVLEAQSKLALIQEHWVLVQQLKSA-------------SGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC-----CCc---chhHHHHHHHHhHHHHHHHHHHHHHH-------------hcCCchhhHH
Confidence 67777777777777776432 211 11112222222222222222222221 1357788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
.....+.+.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++-.+-..+...|+.+.++...++.++.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 8888888764 3477888888999999999999998888776653 345666777778888999999999999988865
Q ss_pred CCCCHHH----HHH---HHHH------HHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHH
Q 008708 337 CSPDICS----YTT---MLSA------YVNASDMEGAEKFFRRLKQDGFVPNVI---TYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 337 ~~~~~~~----~~~---li~~------~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
.|+... |-. +... ....+++.++++..+...+........ .+..+-.++...|++.+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 344322 222 2222 234567777777777776653221222 34456666777889999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
+.++.. +.|..++.--..+|.-...++.|+.-|+.+.+ +.++..
T Consensus 332 evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~ 375 (504)
T KOG0624|consen 332 EVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNT 375 (504)
T ss_pred HHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccH
Confidence 888742 33488888888899888899999999999987 445443
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=5e-05 Score=68.33 Aligned_cols=305 Identities=12% Similarity=0.060 Sum_probs=203.8
Q ss_pred HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCC
Q 008708 68 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVS-HTALMEAYGRGGR 146 (557)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~ 146 (557)
..+-..+++..|+.-|..+.+..+ .+-.++..-...|...|+-.-|+.=|.+.++. +||... --.-...+.+.|.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 455666788888887777776542 23345556678899999999999999999987 577543 2334567789999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
++.|..-|+..+...+. ..+ ...+..+.--.++-. .....+..+...|+...|+..
T Consensus 122 le~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~-------------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHW-------------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHH-------------------HHHHHHHHHhcCCchhhHHHH
Confidence 99999999999886543 211 111111111111111 122334456678999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhc-c---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 227 FALMAERGVQQSTVTYNSLMS-F---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
...+++. .|-...+..+-. + .+....|+.=++...+..-. +..++--+...+...|+.+.++...++.++.
T Consensus 178 i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 178 ITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 9988875 343333333222 2 46677777666666554333 5566667778889999999999999998874
Q ss_pred CCCHHHH----HH---HHHHH------HHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 303 RPTHKAY----NI---LLDAF------AISGMVDQARTVFKCMRRDRCSPDIC---SYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 303 ~~~~~~~----~~---li~~~------~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
.||...+ .. +...+ ...++|.++++..+...+........ .+..+-.++...+++.+|++.-.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 5665432 22 22222 13456666666666666654332223 344455567778999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 367 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 367 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
.++.. +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 333 vL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 333 VLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 98764 4558899999999999999999999999999764
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=2.8e-07 Score=85.04 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=64.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASD 356 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 356 (557)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33445555555444321 233344444445555555555555555554321 12 222223332221 123
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF-DSAVVWYK 435 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 435 (557)
+.+|..+|+++.+. .+++..+.+.+..++...|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555554433 24455555555555555555555555555544332 22344444444444445554 33444555
Q ss_pred HHHh
Q 008708 436 EMES 439 (557)
Q Consensus 436 ~m~~ 439 (557)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5444
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=4e-06 Score=82.37 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=99.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 357 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (557)
+.+......|.+|+.+++.+..... -..-|..+.+-|+..|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444556667777777776665422 22345566667777777777777765432 245556677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
+.|.++-.+.. |.......|-.-..-+-..|++.+|.++|-.+- .|+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 77776655433 223344445555555666677777766654432 3332 344566666666666655543
Q ss_pred HhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 438 ESCGFPPDQ--KAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 438 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
.|+. .|...+..-+...|++.+|++-+-+.
T Consensus 877 -----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 -----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 2332 46666667777777777777666544
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=3.4e-05 Score=85.21 Aligned_cols=337 Identities=12% Similarity=0.057 Sum_probs=208.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCC--HHHHHHHHHH
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP------RPS--ALTYQIILKL 175 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~ll~~ 175 (557)
..+...|++..+..+++.+.......+..........+...|++++|..++......-. .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 33445567776666666542211111222334445556678999999999987754311 111 1122233345
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHH--HHHH---Hh
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ---QSTV--TYNS---LM 246 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~--~~~~---ll 246 (557)
+...|+++.|...++..+......... .....+.+...+...|++++|...+++....... +... .+.. +.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 668899999999999987521111000 1234566777888899999999999888743111 1111 1111 12
Q ss_pred cccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHH
Q 008708 247 SFETNYKEVSKIYDQMQRA----GLQ--P-DVVSYALLINAYGKARREEEALAVFEEMLDAG--VRP--THKAYNILLDA 315 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~ 315 (557)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 2368999999888776542 211 1 22345566677788899999999998875431 112 23345556677
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CCCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 008708 316 FAISGMVDQARTVFKCMRRD--RCSPDIC--SY--TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGY 386 (557)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~ 386 (557)
+...|+++.|...+...... ....... .. ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88999999999999887542 1111111 11 11224456689999999998775542211111 1245677788
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 387 AKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988752 32222 345667778889999999999999999874
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.78 E-value=4.8e-05 Score=75.11 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=119.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS--FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
....+...|+++.|+..|-+.... ...+-. ....|..|+.+++.++.... -..-|..+..-|...|++
T Consensus 712 wg~hl~~~~q~daainhfiea~~~--------~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCL--------IKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhH--------HHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 344455566666666655433210 001111 13567788888887776532 223466777888899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
+.|.++|-+.- .++-.|.+|.+.|+|+.|.++-.+... .......|-+-..-+-.+|++.+|.++|-.+
T Consensus 782 e~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 782 EIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 99998887542 345567889999999999888766653 2445556666666777888888888877533
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
| .|+. .|..|-+.|..+..+++..+-- |+ ..|...+..-|...|+++.|..-|-+.
T Consensus 851 ---~-~p~~-----aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 851 ---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred ---c-CchH-----HHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 2 3443 3567777887777777665432 22 334445555566666666666555443
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=7.9e-08 Score=88.69 Aligned_cols=199 Identities=13% Similarity=0.160 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 346 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 346 (557)
.|.......+...+...++.+.++.-+++.......+ +.........++...|++++|++++... .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3455555555444444345556655555544333232 2333333334566789999999887643 36777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
.+..|.+.++++.|.+.++.|.+.+ .|.. ...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 8999999999999999999998753 4443 3334444433 34699999999998765 5788999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHhcCCCCC
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADER-NEANELLGNFNHPNN 477 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 477 (557)
..|++++|..++++....+ +-++.++..++.+....|+. +.+.+++..+....+
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999999999988743 44567888888888888888 778888888764433
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.77 E-value=3.1e-05 Score=79.12 Aligned_cols=366 Identities=15% Similarity=0.125 Sum_probs=231.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSALTYQIILK 174 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~ 174 (557)
...|..|...|+...+...|.+.|+...+.+ ..+...+..+...|++...++.|..+.-..-+..+ ..-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578999999999999999999999998875 34788899999999999999999998333222111 112233444555
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHh-cccCCH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN-SLM-SFETNY 252 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll-~~~~~~ 252 (557)
.|.+.++...|..-|+..++.. +.|...|..++.+|...|++..|+++|.+....++......|- +.+ ...|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 6788899999999999998532 5678899999999999999999999999887753222222222 222 236889
Q ss_pred HHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHH-
Q 008708 253 KEVSKIYDQMQRAG------LQPDVVSYALLINAYGKARREEEALAVFEEM-------LDAGVRPTHKAYNILLDAFAI- 318 (557)
Q Consensus 253 ~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~li~~~~~- 318 (557)
.++...+..+.... ...-..++..+...+.-.|-..+|...+++. .......+...|-.+.++|.-
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 99998887776431 1112233434444444444444444444433 222212222233222222210
Q ss_pred --cC--CH-HHHHHH-HHHHHhCC--------------------CCCCHHHHHHHHHHHHH----c----CCHHHHHHHH
Q 008708 319 --SG--MV-DQARTV-FKCMRRDR--------------------CSPDICSYTTMLSAYVN----A----SDMEGAEKFF 364 (557)
Q Consensus 319 --~g--~~-~~A~~~-~~~~~~~~--------------------~~~~~~~~~~li~~~~~----~----g~~~~A~~~~ 364 (557)
.. -+ .....+ +.+....+ ...+..+|..++..|.+ . .+...|+..+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 00 00 000001 11111111 11234455555555544 1 2334677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 008708 365 RRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 444 (557)
Q Consensus 365 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 444 (557)
+..++.. ..+..+|+.|.-. ...|++.-+...|-+-.... +-...+|..+...+.+..+++.|...|..... +.|
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP 881 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDP 881 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--cCc
Confidence 7777653 4577778877766 66788888888887766542 44577888888889999999999999998887 445
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 445 -DQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 445 -~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+...|..........|+.-++..++..
T Consensus 882 ~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 445566555566677877777777765
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00063 Score=69.97 Aligned_cols=248 Identities=14% Similarity=0.181 Sum_probs=143.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
..+..++-+++|..+|++. ..+..+...|+. ..+.++.|.++-++. ..+.+|+.+..+-...|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~---------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC---------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh---------CChHHHHHHHHHHHhcC
Confidence 3344555666777766663 234444444443 235566666655554 13346777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008708 219 GYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 295 (557)
Q Consensus 219 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 295 (557)
...+|++-|-+. .|+..|..++.. .|++++..+.+....+....|.+. +.|+-+|++.++..+..+++.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc
Confidence 777776655332 244555555543 466777777766666665555544 356777777777766554432
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 296 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 296 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (557)
-|+......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|.+.-++. .+
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 36666666677777777777777666643 334666777777777777776655432 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..||..+-.+|...+.+.-|. |.-..+-....-...++.-|...|-+++-+.+++..+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 556666666665555444331 2222223334445556666666666666666555443
No 104
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=3.3e-05 Score=72.47 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR-REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMV--DQAR 326 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~ 326 (557)
+..++|+.++.++++..+. +..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|.. ++++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 3445566666666554322 4445666656666666 5688888888877654 33445566555555555552 5677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCH----HHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV---NNL----EKMMEIY 399 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~----~~a~~~~ 399 (557)
.+++++.+.. +.+..+|+....++...|+++++++.+.++++.+ +-|...|+.....+.+. |.. ++..++.
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 7777777654 4467788888888888888888888888888776 44666676666655554 222 4566666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 008708 400 DKMRVNGIKPNQTIFTTIMDAYGKN----KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 458 (557)
Q Consensus 400 ~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 458 (557)
.+++... +-|...|+.+...+... ++..+|...+.+..+.+ +.+...+..|+..+..
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6666643 44567777777777663 34456777777776532 3345567777777765
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=2e-06 Score=82.55 Aligned_cols=219 Identities=11% Similarity=0.106 Sum_probs=166.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 248 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 327 (557)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (557)
..|++.+|.-.|+..++..+. +...|.-|.......++-..|+..+.+.++.. +.+......|.-.|...|.-..|+.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 346678888888888877544 77889999888999999999999999998864 4466788888889999999999999
Q ss_pred HHHHHHhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 328 VFKCMRRDRCSP--------DICSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 328 ~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 398 (557)
.++.-+....+- +...-+. ..+.....+....++|-++.. .+..+|+.+...|.-.|.-.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 998876542110 0000000 111122233445555555544 44458888999999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 399 YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
|+.++... +-|..+||.|...++...+.++|+..|+++++ +.|+- .....|.-.|...|.+++|...+=.+.
T Consensus 453 f~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999753 44688999999999999999999999999998 78876 578888999999999999998885543
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.5e-06 Score=85.63 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
|..++.+|...|+..+|..+..+..+. +|++..|..+.+......-+++|.++++..... .-..+......
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~ 497 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccccc
Confidence 445566666667666666666666552 566666666666665555566666666654322 11111122223
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
.+++.++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|....... +.+...||.+-.+|.+.|+-.+|...
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 566666666666655543 4455666666666666667777666666665431 22356667777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 434 YKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 434 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+++..+.+ .-+...|....-.....|.+++|.+.+.++.
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77666655 3344555555555666666776666666554
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=1.2e-05 Score=69.99 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=110.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+-..+...|+-+.+..+........ +.+....+..+....+.|++..|+..+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566666777666666666644321 3355556667777777788888888887777654 77777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 390 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
|+++.|..-|.+..+.. .-++..++.+...+.-.|+++.|..++......+ .-|..+-..+..+....|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888777777642 3346667777777777788888888777776643 335666677777777778888887776
Q ss_pred Hhc
Q 008708 470 GNF 472 (557)
Q Consensus 470 ~~~ 472 (557)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=9.9e-06 Score=70.62 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=117.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 357 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (557)
+..|...|+++.+......+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4568888998887555433221 11 01223566777777777777654 56888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGY-AKVNN--LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 434 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 434 (557)
++|...|++..... +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998875 56788888888864 67677 589999999999864 446788888889999999999999999
Q ss_pred HHHHhCCCCCCHHHH
Q 008708 435 KEMESCGFPPDQKAK 449 (557)
Q Consensus 435 ~~m~~~~~~p~~~~~ 449 (557)
+++++.. +|+..-.
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998853 5555443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=0.00014 Score=68.26 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHhCCCCCCHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS---GM----VDQARTVFKCMRRDRCSPDIC 342 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~ 342 (557)
+..+|+...-++...|+++++++.++++++.. +.+..+|+.....+.+. |. .+.++....+++... +-|..
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~S 218 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNES 218 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcC
Confidence 34444444444555555555555555555443 22333444333333222 11 123444443443332 23444
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNA----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 343 ~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
.|+.+...+... +...+|.+.+.+....+ +.+......|++.|+.
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555555555442 23344555555554433 3345555556666553
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=3.6e-06 Score=82.98 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=151.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
-..+...+.+.|-...|..+|+++ ..|..++.+|+..|+..+|..+..+..++ +|+...|..+...
T Consensus 401 q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 344566777888888888888877 35777888888888888888888777763 4666677666665
Q ss_pred cCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 249 ETN---YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQA 325 (557)
Q Consensus 249 ~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (557)
..+ ++.|.++.+.... ..-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 444 4556655554422 122222223344677888888887766543 34556777777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 326 RTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
...|....... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++...
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88887776542 3345678888888888888888888888877766 445556666666677788888888888777642
Q ss_pred -CCCcCHHHHHHHHHHH
Q 008708 406 -GIKPNQTIFTTIMDAY 421 (557)
Q Consensus 406 -~~~p~~~~~~~l~~~~ 421 (557)
....|..+...++...
T Consensus 617 ~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhcccchhhHHHHHHH
Confidence 1112444444444443
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.60 E-value=0.00022 Score=73.22 Aligned_cols=180 Identities=15% Similarity=0.091 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
..|+..+.+.++.. ..+..+|+.|.-. ...|.+.-|...|-+-.... +.+..+|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 46677777766542 2345556655444 55577777777776655432 446677888888888999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR----VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES---- 439 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---- 439 (557)
.... |.|...|-.........|+.-++..+|..-- ..|-.|+...|-+.......+|+.++-+...+.+..
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 8764 5667777666666667888888888887622 123345555555555556677776654444333321
Q ss_pred -----CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 440 -----CGFPPDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 440 -----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
.+.+-+...|.+.+....+.+.+++|.++..+
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 13344456788888888888888887766655
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=6.9e-05 Score=79.30 Aligned_cols=207 Identities=13% Similarity=0.173 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP---DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 241 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 241 (557)
+...|...|....+.++.++|.+++++++.. .++.. -..+|.++++.-..-|.-+...++|+++.+.. +
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d--- 1528 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---D--- 1528 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---c---
Confidence 3444555555555555555555555555531 11111 11344444544444455555555555554430 0
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008708 242 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 242 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 321 (557)
....|..|...|.+.++.++|.++++.|.+. +......|...+..+.+..+
T Consensus 1529 ----------------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1529 ----------------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred ----------------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH
Confidence 1123334444444444444444444444432 11233344444444444444
Q ss_pred HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 322 VDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 322 ~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
-+.|..++.+.++.-.. -......-.+..-.+.|+.+++..+|+..+... |--...|+..++.-.++|+.+.+..+|+
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 44444444444332100 011222223333334444444444444444331 2333444444444444444444444444
Q ss_pred HHHHCCCCc
Q 008708 401 KMRVNGIKP 409 (557)
Q Consensus 401 ~m~~~~~~p 409 (557)
++...++.|
T Consensus 1659 Rvi~l~l~~ 1667 (1710)
T KOG1070|consen 1659 RVIELKLSI 1667 (1710)
T ss_pred HHHhcCCCh
Confidence 444444333
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=7.8e-06 Score=74.29 Aligned_cols=186 Identities=13% Similarity=-0.021 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH---KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CS 343 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 343 (557)
.....+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667777888888888888888888887653 2222 35677778888888888888888888765321111 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 008708 344 YTTMLSAYVNA--------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 415 (557)
Q Consensus 344 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (557)
+..+..++... |++++|.+.++.+.... +-+...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 55555556554 67778888888877653 222222222211100 000 00 00112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCG--FPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
.+...+.+.|++++|...++.+.+.. -+.....+..+..++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566788888888888888887631 112346777888888888998888888877653
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=6.2e-05 Score=79.63 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=181.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008708 201 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAER-GVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 279 (557)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (557)
|-+...|-..+......++.++|.++.++++.. +++-.. --...|.++++
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee-----------------------------EKLNiWiA~lN 1505 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE-----------------------------EKLNIWIAYLN 1505 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH-----------------------------HHHHHHHHHHh
Confidence 344567888899999999999999999999875 111000 01234666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 280 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 359 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 359 (557)
.-...|.-+...++|+++.+. -.....|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.++.+-+.
T Consensus 1506 lEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1506 LENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred HHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHH
Confidence 666667888889999998874 22345788999999999999999999999987632 467789999999999999999
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 360 AEKFFRRLKQDGFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 360 A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
|..++.++++.- |- ......-.+..-.+.|+.+++..+|+...... +-....|+.+++.-.++|+.+.+..+|++.
T Consensus 1583 a~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1583 ARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999988762 22 34455666677778999999999999988652 445788999999999999999999999999
Q ss_pred HhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHH
Q 008708 438 ESCGFPPDQ--KAKNILLSLAKTADERNEANEL 468 (557)
Q Consensus 438 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 468 (557)
...++.|-. ..|...+..=...|+-+.++.+
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 998888755 4677777776777776555443
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00015 Score=74.41 Aligned_cols=227 Identities=13% Similarity=0.129 Sum_probs=148.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008708 212 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEAL 291 (557)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 291 (557)
..+...+-+++|..+|++.. .+....+.++..-++.++|.+.-+... .+..|+.+..+-.+.|...+|+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 34455666777777776643 245556666666677777766655542 4567888999988999998888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 292 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (557)
+-|-+. .|+..|..+++...+.|.+++-.+.+.-.++....|... +.|+-+|++.++..+.++++.
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc------
Confidence 777543 467788899999999999999988887777665555543 567888888888877666553
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH---------------
Q 008708 372 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE--------------- 436 (557)
Q Consensus 372 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------- 436 (557)
-||......+++-|...|.++.|.-+|.... -|..+...+...|+++.|...-++
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 4666666666777777777766665554432 233333334444444443332222
Q ss_pred ---------HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 437 ---------MESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 437 ---------m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
|-..++.....-+.-++..|...|-+++...+++...
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 2112233344556677778888888888888887643
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=6.9e-06 Score=67.66 Aligned_cols=94 Identities=9% Similarity=-0.107 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666677777777777777777664 5566777777777777777777777777777653 4456777777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 008708 424 NKDFDSAVVWYKEMES 439 (557)
Q Consensus 424 ~g~~~~A~~~~~~m~~ 439 (557)
.|++++|+..|+..++
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777776
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=1.9e-05 Score=71.74 Aligned_cols=172 Identities=15% Similarity=0.048 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHc-----
Q 008708 249 ETNYKEVSKIYDQMQRAGLQ-PD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH--KAYNILLDAFAIS----- 319 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~----- 319 (557)
.+++++|...|+.+....+. |. ..++..+..++...|++++|+..++++.+....... .++..+..++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 68999999999999886432 11 246778889999999999999999999875321111 2455566666654
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 320 ---GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 320 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
|++++|.+.|+.+.... +.+...+..+..... ... . . ......+...+.+.|++++|.
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~-~-------~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------R-L-------AGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------H-H-------HHHHHHHHHHHHHcCChHHHH
Confidence 78899999999998763 212223222211110 000 0 0 011225667788999999999
Q ss_pred HHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 397 EIYDKMRVNG--IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 397 ~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..+++..+.. -+.....+..++.++...|++++|..+++.+..
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999988652 122357888999999999999999999888875
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.58 E-value=1.3e-05 Score=69.98 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=119.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 313 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
+..|...|+++......+.+... . ..+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 44688899988875554333211 1 01223667788888888888876 78999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAY-GKNKD--FDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++.++.+ +-+...+..+...+.+.|++++|...+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999864 44688888888864 67787 599999999999853 446678889999999999999999999
Q ss_pred HhcCCCCCC
Q 008708 470 GNFNHPNNE 478 (557)
Q Consensus 470 ~~~~~~~~~ 478 (557)
+++.+..+.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 998866553
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=9.5e-08 Score=55.95 Aligned_cols=32 Identities=34% Similarity=0.671 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008708 126 GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 157 (557)
Q Consensus 126 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 157 (557)
|++||..+||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776665
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.3e-07 Score=55.39 Aligned_cols=31 Identities=42% Similarity=0.887 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 372 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 372 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
+.||..||+.||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.51 E-value=3.1e-05 Score=67.36 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=91.2
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008708 71 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 150 (557)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 150 (557)
...|+.+....+...+.... +.+......++....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+++.|
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHH
Confidence 33344444444443332221 2334444456666677777777777777766553 55667777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 151 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 151 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
..-|.+..+..+. ++..++.+.-.+.-.|+.+.|..++..... ....|..+-..|.......|++++|..+...-
T Consensus 154 r~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l----~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 154 RRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL----SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 7777776665332 455566666666667777777777766642 22335566666666677777777776665443
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=5.5e-05 Score=65.81 Aligned_cols=171 Identities=11% Similarity=0.086 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
+.+.+.......+......-...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444333333333333333445566666666666555411 1122222233344555566666666666543
Q ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 338 SPDICSYTTMLSAYVNA----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
.+..|.+.|..++.+. +.+..|.-+|++|.+. .+|+..+.+....++...|++++|..+++..+... ..++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 2445555555555432 3455566666665543 35566666666666666666666666666665543 234555
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSA-VVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A-~~~~~~m~~ 439 (557)
...++.+-...|...++ .+.+.++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 55554444444444332 334444443
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=0.00012 Score=76.77 Aligned_cols=236 Identities=12% Similarity=0.143 Sum_probs=126.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
...+..|+..|...+++++|.++.+...+. .|+ ...|-.+...+.+.++..++..+ . ++.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 445556666666666666666666655544 233 33333333455555554443333 1 222
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 254 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 254 (557)
......++.-...++..+.+ ...+..++..++.+|-+.|+.++|..+++++.+..
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------------------- 146 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------------------- 146 (906)
T ss_pred hcccccchhHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------
Confidence 22222233222223333321 12333456666666777777777776666666542
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
+-|..+.|.+...|... ++++|.+++.+.... +...+++..+..+|.++..
T Consensus 147 -------------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 147 -------------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred -------------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 22566667777777766 777777777766543 5555666777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 335 DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
.. |+ +.+.-..+.+.+... +..--..++-.+-..|....+++++..+++.+++.. +-|...
T Consensus 198 ~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a 259 (906)
T PRK14720 198 YN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKA 259 (906)
T ss_pred cC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Ccchhh
Confidence 42 11 122222233333322 222233455556666777777888888888877753 334555
Q ss_pred HHHHHHHHH
Q 008708 414 FTTIMDAYG 422 (557)
Q Consensus 414 ~~~l~~~~~ 422 (557)
..-++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 555665554
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=1.5e-05 Score=65.63 Aligned_cols=95 Identities=7% Similarity=-0.107 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445566667777777777777766553 3466667777777777777777777777777654 5566777777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 008708 389 VNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~ 405 (557)
.|++++|...|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777664
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00037 Score=60.84 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI----SGMVDQA 325 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 325 (557)
+++++|.+...... +......=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.+ .+.+..|
T Consensus 122 ~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 122 GDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred CChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 44555555444411 3333333445556667777777777777652 345566666666543 2456777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 008708 326 RTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK-MMEIYDKMRV 404 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 404 (557)
.-+|++|.++ .+|++.+.+....++...|++++|..+++...... ..++.+...++.+-...|...+ ..+.+.++..
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7777777642 36677777777777777777777777777777654 4456666666666556665433 3344445443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.6e-05 Score=65.13 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|..++++..+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555666667777777777777766654 4466667777777777777777777777766653 4455666666677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAK 449 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 449 (557)
+...|++++|...++...+ +.|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchH
Confidence 7777777777777777766 34544443
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00015 Score=68.84 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=87.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
-..-.+...|++++|+..++.+... .|.|+..+......+...++.++|.+.++++....+. .......+..++.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcC
Confidence 3344445566777777777776654 2334555555666677777777777777777664322 2455556666777777
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
++.+|+.+++.... ..+.|+..|..|..+|...|+..++..-..+.... .|++++|...+.
T Consensus 389 ~~~eai~~L~~~~~----~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---------------~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLF----NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL---------------AGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh---------------CCCHHHHHHHHH
Confidence 77777777766653 33556666777777777777777666655554432 355666666665
Q ss_pred HHHHC
Q 008708 261 QMQRA 265 (557)
Q Consensus 261 ~~~~~ 265 (557)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 55543
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.42 E-value=0.00015 Score=75.28 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
.+...+..|.....+.|.+++|..+++...+. .|+ ......++..+.+.+++++|...+++..... +.+....+.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35667777777777888888888888877764 344 4456667777777888888888887777653 3355666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.- .|....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 777777888888888888877643 4456777777777888888888888888777642 333444443
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.0002 Score=61.97 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 250 TNYKEVSKIYDQMQR---AG-LQPDVV-SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ 324 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (557)
.+.+++.+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +.+..+-..-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345566666555543 22 333332 23344445555666666666666655442 2222222111222344566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 325 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 325 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
|+++++.+.+.. +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666666554 334455554444445555555666555555543 355666666666666666666666666666654
Q ss_pred CCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHh
Q 008708 405 NGIKPNQTIFTTIMDAYGKNK---DFDSAVVWYKEMES 439 (557)
Q Consensus 405 ~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 439 (557)
.. |.++..+..+.+.+.-.| +...|.++|.+.++
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 31 223444444444433222 34455555655554
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.0041 Score=62.95 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=88.4
Q ss_pred HHHHHHhhChHHHHHHHhhhcCCCCChHHHHHHHHH-hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh
Q 008708 34 LMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF 112 (557)
Q Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 112 (557)
+...+++.++|..+++. .. -+..+.+ +...|.|++|+++-+.--+-. -..+|..-...+-..++.
T Consensus 809 LAieLgMlEeA~~lYr~-ck---------R~DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQ-CK---------RYDLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHhhHHHHHHHHHH-HH---------HHHHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccH
Confidence 34456677788777763 11 1223333 245567777776654322221 134555555555566666
Q ss_pred hHHHHHHHHH---------------------HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 113 NKAEKVLSFM---------------------NKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 113 ~~A~~~~~~~---------------------~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
+.|++.|++. .++ ..+...|.--...+-..|..+.|+.+|...+. |-+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~--~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR--KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh--ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 6666655421 111 23555555555556666777777777765432 344
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
+++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|..+|.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es---------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES---------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc---------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555566666666655443 23444555666666666666666666544
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00054 Score=59.40 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHhHhccCCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHhcccCCHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSP-LKPDQK-MFHMMIYMYKKAGGYEKARKLFALMAERGVQQ-ST-VTYNSLMSFETNYKEVS 256 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~ll~~~~~~~~a~ 256 (557)
+.++..+++..++...+.+ ..++.. .|..+.-+....|+.+.|..+++.+..+-+.. -+ .....++.+.+++++|.
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 3444445554444333333 344443 23344455556677777777776665542111 11 12333444566667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
++|+.+...+ +.|..++---+.+.-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-..
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 7776666654 335666666666666677777777777777665 45677788888888888888888888887776442
Q ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 008708 337 CSPDICSYTTMLSAYVNAS---DMEGAEKFFRRLKQD 370 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 370 (557)
|.++..+..+...+...| +.+-+.++|.+.++.
T Consensus 185 -P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 -PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 334555555555544443 455566777766654
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=0.00014 Score=75.48 Aligned_cols=148 Identities=8% Similarity=0.023 Sum_probs=125.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGT 381 (557)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (557)
.+.+...+..|.......|.+++|..+++...+.. +-+......++.++.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45568899999999999999999999999998763 3356678889999999999999999999999875 667788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.- .|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 9999999999999999999999843 4458899999999999999999999999998742 34444444333
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.00029 Score=73.99 Aligned_cols=228 Identities=11% Similarity=0.124 Sum_probs=137.5
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG 142 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 142 (557)
....+..+...++++.|.++.+...+..+ -....|..+...+.+.++.++|..+ .+.. ...
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P--~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~~~ 94 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHK--KSISALYISGILSLSRRPLNDSNLL--NLID---------------SFS 94 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC--cceehHHHHHHHHHhhcchhhhhhh--hhhh---------------hcc
Confidence 34444455588999999999997776653 2344555566688888887777666 3332 222
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
...++.....+...|... .-+..++..+..+|-+.|+.++|..+++++++.+ +.|+.+.|.+...|+.. ++++
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHh-hHHH
Confidence 333332233333333332 2234456666666777777777777777776432 45566667777777666 7777
Q ss_pred HHHHHHHHHHcCC-----CCCHHHHHHHhcc-cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008708 223 ARKLFALMAERGV-----QQSTVTYNSLMSF-ETNYKEVSKIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFE 295 (557)
Q Consensus 223 A~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 295 (557)
|+.++.+...+-+ ..-...|..++.. ..+.+.-..+.+.+... +...-+.++-.+-..|...+++++++.+++
T Consensus 168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7777666654311 0111122223222 23445555555555554 334445667777788889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH
Q 008708 296 EMLDAGVRPTHKAYNILLDAFA 317 (557)
Q Consensus 296 ~~~~~~~~~~~~~~~~li~~~~ 317 (557)
.+++.. +.|.....-++.+|.
T Consensus 248 ~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcC-CcchhhHHHHHHHHH
Confidence 999874 346667777777775
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.0014 Score=62.38 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=71.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQART 327 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 327 (557)
.+.+++|+..++.+.+..+ -|...+......+.+.|+.++|.+.++++... .|+ ......+..+|.+.|++.+|+.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3555556666655555421 23344444455556666666666666666553 233 3444455556666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 328 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+++...... +.|+..|..|..+|...|+..++.....+ .|...|+++.|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 665555432 34555666666666666655554443332 234445566666555555543
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=8.7e-05 Score=60.68 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
....+...+...|++++|...|+.+...+ +.+...+..+...+...|++++|...++.....+ +.+...+..+..+|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34445555556666666666666655433 3355555566666666666666666666655543 445555666666666
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 008708 388 KVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~ 405 (557)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666653
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=9.1e-05 Score=70.93 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
....|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+.+...+ .+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34467888888999999999999999874 55 445588888889999999999999987644 36777777788899
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
+.++.+.|+++.+++++. .|.+..+|..|..+|.+.|+++.|+..+..+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999853 245567999999999999999999999987763
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00027 Score=58.42 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQII 172 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l 172 (557)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|++.......|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 444555555 3777788888888887763 223 23334455777788888888888888887653332 2234456
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 173 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 173 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
...+...|++++|+..++... +.......+....+.|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-----DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888888888888886642 12234456667788888888888888888653
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.0004 Score=57.41 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
|...+...|++++|+..++..... ......+....++|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444444444332211 12233334444444444555554444443
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.02 E-value=0.00028 Score=67.60 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+...++++.|.++++++.+.. |+. ...++..+...++-.+|.+++++.++.. +-+...+..-...|.+.++++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 33334444555555555544432 322 2224444444444455555555544321 223444444444455555555
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 429 SAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
.|+.+.+++.+ ..|+. .+|..|..+|...|++++|...++.+
T Consensus 252 lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555554 23332 35555555555555555555555443
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.03 Score=57.68 Aligned_cols=221 Identities=19% Similarity=0.222 Sum_probs=134.6
Q ss_pred hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 008708 40 EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 119 (557)
Q Consensus 40 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (557)
++..|++.......+....+..-++..+. +.++|+.++|..+++.....++ .+..+...+-.+|.+.|+.++|..+|
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLs-l~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALS-LFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHH-HHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34466666664333332233333444443 3457788888888888776653 36778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHH---------HHHHHH
Q 008708 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFK---------EAEEVF 189 (557)
Q Consensus 120 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~---------~A~~~~ 189 (557)
++.... -|+......+..+|++.+.+.+-.+.--++-+. .+-+++.+=++++.....- ..+ -|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 998876 467888888888888888776655554444443 3335555555665554432 222 255566
Q ss_pred HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCHHHHH---HHhcccCCHHHHHHHHHHHHHC
Q 008708 190 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL-MAERGVQQSTVTYN---SLMSFETNYKEVSKIYDQMQRA 265 (557)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~---~ll~~~~~~~~a~~~~~~~~~~ 265 (557)
+.+++.+ |.-.+..-...-...+...|++++|..++.. ..+.-..-+...-+ .++..++++.+..++-.++...
T Consensus 178 ~~~l~~~--gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 178 QKLLEKK--GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHhccC--CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 6666532 2112222222334455667889999888843 33332222222222 2334478888888888888877
Q ss_pred CCC
Q 008708 266 GLQ 268 (557)
Q Consensus 266 ~~~ 268 (557)
+..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 643
No 141
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.96 E-value=0.00012 Score=67.65 Aligned_cols=131 Identities=12% Similarity=0.055 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CC-CCCCHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMR----RDRC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ----DG-FVPNVI 377 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~ 377 (557)
.|..|.+.|.-.|+++.|+...+.-+ +.|- ......+..+..++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555555566666665544321 1111 11224455666666666677766666665332 11 122334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+..+|.+.|.-..++++|+.++.+-+.. +..-....+..+..+|...|..+.|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4555666666666667776666553320 111234556666667766777666666655443
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.035 Score=57.18 Aligned_cols=386 Identities=14% Similarity=0.153 Sum_probs=214.6
Q ss_pred HHHhhChHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 008708 37 QIEEVGSAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKA 115 (557)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 115 (557)
.+++..+|..+++. ...-..+++.++.++. .+..++..++|..+++++.... |+......+..+|.+.+.+.+-
T Consensus 55 r~gk~~ea~~~Le~--~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 55 RLGKGDEALKLLEA--LYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HhcCchhHHHHHhh--hccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHH
Confidence 34466688877762 3333444666777775 4678899999999999998876 4567777888889998888775
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CC---------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 008708 116 EKVLSFMNKKGYAPSVVSHTALMEAYGRG-GR---------YKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKE 184 (557)
Q Consensus 116 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~---------~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~ 184 (557)
.++=-++-+. ++.+...+=++++.+... .. ..-|.++++.+.+.+ .--+..-...-...+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5544444432 223344333444444332 11 234566677776654 33334444555567788999999
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHhcc--------c--
Q 008708 185 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV-----TYNSLMSF--------E-- 249 (557)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~--------~-- 249 (557)
|..++..-.. ..-...+...-+.-+..+...+++.+..++-.++...|... -. .+..+-.. .
T Consensus 209 al~~l~~~la--~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd-y~~~~~sv~klLe~~~~~~a~~~~s~ 285 (932)
T KOG2053|consen 209 ALEFLAITLA--EKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD-YKIYTDSVFKLLELLNKEPAEAAHSL 285 (932)
T ss_pred HHHHHHHHHH--HhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc-hHHHHHHHHHHHHhcccccchhhhhh
Confidence 9999844432 12223344555667888999999999999999998876432 11 11222111 0
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCC----CHHHH---------HHH
Q 008708 250 -TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG---KARREEEALAVFEEMLDAGVRP----THKAY---------NIL 312 (557)
Q Consensus 250 -~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~----~~~~~---------~~l 312 (557)
+..+...+..+...... ....|-+-+.++. .-|+.+++...|-+- -|..| |...| ..+
T Consensus 286 ~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l 360 (932)
T KOG2053|consen 286 SKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSL 360 (932)
T ss_pred hhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHH
Confidence 11222222222222221 1122333333333 457777766554432 23333 22222 223
Q ss_pred HHHHHHc------------------------C-----CHHHHHHHHHHHH---hCC------CCCCH---------HHHH
Q 008708 313 LDAFAIS------------------------G-----MVDQARTVFKCMR---RDR------CSPDI---------CSYT 345 (557)
Q Consensus 313 i~~~~~~------------------------g-----~~~~A~~~~~~~~---~~~------~~~~~---------~~~~ 345 (557)
+..+... | .-+.-..++.+.. +.| .-|+. -+-+
T Consensus 361 ~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~ 440 (932)
T KOG2053|consen 361 MSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVN 440 (932)
T ss_pred HHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHH
Confidence 3332211 1 1122222222221 111 22222 2346
Q ss_pred HHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 346 TMLSAYVNASDME---GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 346 ~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
.|+..|.+.++.. +|+-+++...... +.|..+--.+|..|+-.|-+..|.++|..+--..+.-|..-|-. ...+.
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~ 518 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAE 518 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHH
Confidence 6777888887765 4555565555543 55666777889999999999999999998865545444333221 22334
Q ss_pred hcCChhHHHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEME 438 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~ 438 (557)
..|++..+...+....
T Consensus 519 t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHL 534 (932)
T ss_pred hcccchhHHHHHHHHH
Confidence 4556666655555544
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.93 E-value=0.024 Score=55.01 Aligned_cols=421 Identities=11% Similarity=0.135 Sum_probs=237.0
Q ss_pred hchhcchhHHHHHHHHHhh--ChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHH
Q 008708 23 ADEAGKKNWRRLMNQIEEV--GSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL 100 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (557)
..+.|+.+|+.++..+... +++....+. ...--|..+..+...+.+....++++.+..+|....... ++...|.
T Consensus 15 ~nP~di~sw~~lire~qt~~~~~~R~~YEq-~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQPIDKVRETYEQ-LVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccCCHHHHHHHHHH-HhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 3688999999999988643 344555553 233344445556666666666788888889998876554 4556666
Q ss_pred HHHHHHHh-cCChhH----HHHHHHHHH-hCCCCC-CHHHHHHHHHHH---------HhcCChHHHHHHHHHHHhCCCCC
Q 008708 101 MLITAYGK-QGDFNK----AEKVLSFMN-KKGYAP-SVVSHTALMEAY---------GRGGRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 101 ~l~~~~~~-~g~~~~----A~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~~~~ 164 (557)
.-+.--.+ .|+... ..+.|+-.. +.|+.+ +-..|+..+..+ ..+.+.+...++|++++..-..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~- 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH- 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-
Confidence 55544333 344433 334444433 334333 344577766543 3344566677778777653111
Q ss_pred CH-HHHHHHHHHHHHcCC--------------HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc-------CCHHH
Q 008708 165 SA-LTYQIILKLFVEANK--------------FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-------GGYEK 222 (557)
Q Consensus 165 ~~-~~~~~ll~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~ 222 (557)
+. ..|+-.. .+-..=+ +-.|.++++++ ..+.+++.+. |-.++
T Consensus 170 nlEkLW~DY~-~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel---------------~~lt~GL~r~~~~vp~~~T~~e 233 (656)
T KOG1914|consen 170 NLEKLWKDYE-AFEQEINIITARKFIGERSPEYMNARRVYQEL---------------QNLTRGLNRNAPAVPPKGTKDE 233 (656)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH---------------HHHHhhhcccCCCCCCCCChHH
Confidence 21 1222111 1111111 12222222222 2223333222 11122
Q ss_pred H--HHHHHHHH----HcC-------------------------CCCCHHHH-HHHhcc-------cCC-------HHHHH
Q 008708 223 A--RKLFALMA----ERG-------------------------VQQSTVTY-NSLMSF-------ETN-------YKEVS 256 (557)
Q Consensus 223 A--~~~~~~~~----~~~-------------------------~~~~~~~~-~~ll~~-------~~~-------~~~a~ 256 (557)
. .+++.... +.+ ..|+.... ...+.. .|+ .+++.
T Consensus 234 ~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 234 IQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 1 11121111 111 11211110 001110 111 34555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYG---KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
.+++.....-...+...|..+...-- +.++.+.....++++...-...-..+|...++...+..-+..|..+|.+..
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 55555544322223333333332211 112355666667766554322333467778888888888999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--
Q 008708 334 RDRCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-- 410 (557)
Q Consensus 334 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 410 (557)
+.+..+ ++...++++..|+ .++..-|.++|+--++. ...++.-....++.+...++-..+..+|++....++.|+
T Consensus 394 ~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 887666 6777788887665 57889999999976554 234445556778888899999999999999998877766
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHH
Q 008708 411 QTIFTTIMDAYGKNKDFDSAVVWYKEMESC---GFPPDQKAKNILLSLAKTADERNEAN 466 (557)
Q Consensus 411 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 466 (557)
..+|..++.-=..-|++..+.++-+++... ...+....-..+++-|.-.+....-.
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 578999999889999999999998887652 01222234445556565555544433
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00042 Score=66.75 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 346 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 346 (557)
.+......+++.+....+.+.+..++.+.... ....-..|..+++..|.+.|..+.++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555566655555443 1111223344566666666666666666665555666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666655554444545544444444443
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00017 Score=64.22 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 345556666666666666553 4455556666666666666666666666655432 11245566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 008708 431 VVWYKEMESCGFPPDQKAKNI 451 (557)
Q Consensus 431 ~~~~~~m~~~~~~p~~~~~~~ 451 (557)
++.|++.++ +.|+..+|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 666666665 4555554443
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=2.2e-05 Score=46.57 Aligned_cols=32 Identities=38% Similarity=0.774 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 410 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 410 (557)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=2.2e-05 Score=46.63 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 165 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 165 (557)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666554
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00028 Score=53.10 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555544432 2233444444555555555555555555544432 2223344444445555555
Q ss_pred hhHHHHHHHHHH
Q 008708 427 FDSAVVWYKEME 438 (557)
Q Consensus 427 ~~~A~~~~~~m~ 438 (557)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.88 E-value=0.00027 Score=68.09 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=104.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 377 (557)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (557)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344567778888888888888899999999888765 222334566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 424 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 424 (557)
+++.|++.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998777677777777666666555
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00047 Score=66.33 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=59.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666654 4455666666666666667777766666666542 234556666666666667777
Q ss_pred HHHHHHHHHHhCCCCCCHHH
Q 008708 429 SAVVWYKEMESCGFPPDQKA 448 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~ 448 (557)
+|+..|+++++ +.|+...
T Consensus 88 eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHH--hCCCCHH
Confidence 77777666665 3444433
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=2.6e-05 Score=45.92 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 164 (557)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555554443
No 152
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.84 E-value=3.5e-05 Score=45.37 Aligned_cols=28 Identities=25% Similarity=0.674 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
|+.++.+|++.|+++.|.++|+.|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00083 Score=53.32 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPNQTIFTTIM 418 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~ 418 (557)
++..++..+.+.|++++|.+.|..+..... +.....+..+..++.+.|+++.|...|+.+.... .+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666666654320 1112344556666666666666666666666431 111134455566
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 008708 419 DAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666653
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00035 Score=52.56 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
++..++..+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567788889999999999999998753 3445778888899999999999999999998753 445568888889999
Q ss_pred hcCCHHHHHHHHHhcCCCC
Q 008708 458 TADERNEANELLGNFNHPN 476 (557)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~ 476 (557)
..|+++.|...+....+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 9999999999998876443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.0012 Score=52.38 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGY--APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIIL 173 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll 173 (557)
++..++..+.+.|++++|.+.|+.+..... +.....+..+..++.+.|+++.|...|+.+....+.. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555555555555555555544320 0012344445555555555555555555554432221 133344444
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 008708 174 KLFVEANKFKEAEEVFMTLL 193 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~ 193 (557)
.++.+.|+.++|.+.++.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 45555555555555555554
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.00045 Score=58.85 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=48.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP--SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
...|..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++.....+. ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4455666667777777777777777776542111 1246667777777777777777777776654222 334444444
Q ss_pred HHHH
Q 008708 174 KLFV 177 (557)
Q Consensus 174 ~~~~ 177 (557)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0096 Score=55.61 Aligned_cols=273 Identities=12% Similarity=0.032 Sum_probs=123.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 183 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 183 (557)
..+.+..++..|+..+....+.. +.++..|..-...+...|++++|+--.+.-++.... ......-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 34455666677777777776664 334556666666666777777776666555443221 1122223333333344444
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH----hcccCCHHHHHHH
Q 008708 184 EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSL----MSFETNYKEVSKI 258 (557)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l----l~~~~~~~~a~~~ 258 (557)
+|.+.++... .+ ....|+..++........ |.-.+|..+ +...+++++|...
T Consensus 135 ~A~~~~~~~~------------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 135 EAEEKLKSKQ------------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHhhhhh------------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4443333110 00 011111111111111100 111111111 1113444444443
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHHHcCCHHHH
Q 008708 259 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA-------------YNILLDAFAISGMVDQA 325 (557)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A 325 (557)
--.+.+.... +......-..++.-.++.+.|...|++.+..+ |+... +..=.+...+.|.+..|
T Consensus 192 a~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 3333332111 11111112223334455566666666555432 32221 11112334466777777
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 326 RTVFKCMRRD---RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 326 ~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
.+.+.+.+.. +..|+...|.....+..+.|+..+|+.--++..+.+ +.-...|..-..++.-.++|++|.+.|++.
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766543 334455556666666666777777776666665432 111223333344444556667777666666
Q ss_pred HHC
Q 008708 403 RVN 405 (557)
Q Consensus 403 ~~~ 405 (557)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 543
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.0021 Score=52.34 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
....+..-+...|++++|..+|+-+.... +-+..-|..|.-+|-..|++++|+..|....... +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34444455556666666666666665543 4455556666666666677777777776666554 345666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 008708 423 KNKDFDSAVVWYKEMES 439 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~ 439 (557)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777766666654
No 159
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.0006 Score=51.28 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=63.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGY-APSVVSHTALMEAYGRGG--------RYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
..|..+...+++...-.+|+.+.+.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456666666999999999999999998 899999999998877653 34567788888888888999999998
Q ss_pred HHHHHHH
Q 008708 172 ILKLFVE 178 (557)
Q Consensus 172 ll~~~~~ 178 (557)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877653
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.71 E-value=0.00083 Score=54.61 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
....+..-+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|+..|......++ .|+..+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 34455666667777777777777776654 23566666777777777777777777777766654 36666777777777
Q ss_pred HcCCHHHHHHHHHHhHh
Q 008708 178 EANKFKEAEEVFMTLLD 194 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~ 194 (557)
..|+.+.|.+.|+.++.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777664
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0033 Score=53.73 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=65.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQII 172 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 172 (557)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|+..+.+.....+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677888888888999999999998876532221 467888888888899999999999888876433 56666677
Q ss_pred HHHHHHcCCHHH
Q 008708 173 LKLFVEANKFKE 184 (557)
Q Consensus 173 l~~~~~~g~~~~ 184 (557)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 777777776433
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0036 Score=53.50 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPD--ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555443321111 2344444445555555555555555444432 2233344444444
Q ss_pred HHHcCCH
Q 008708 386 YAKVNNL 392 (557)
Q Consensus 386 ~~~~g~~ 392 (557)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444443
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.0013 Score=49.50 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 360 AEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
.+.+|+.|...+++|+..+|+.++..+
T Consensus 88 LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 88 LLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 344444444444444444444444433
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.0023 Score=61.68 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=39.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
...|+++.|+..|++.++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++|.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34444444444444444332 2233444444444444555555555555444432 334444444444555555555555
Q ss_pred HHHHHHHH
Q 008708 397 EIYDKMRV 404 (557)
Q Consensus 397 ~~~~~m~~ 404 (557)
..|++.++
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555444
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.027 Score=52.54 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVR-----PTHK-AYNILLDAFAISGMVDQARTVFKCMRRD 335 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (557)
.+..++..+.+.|++++|.++|++....... .+.. .+...+-++...||...|...|++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666777777777777777776553221 1111 2233333555667777777777766543
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.029 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
......|...|++++|...|.+...
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHH
Confidence 3334566667777777777766543
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.57 E-value=0.0021 Score=54.67 Aligned_cols=26 Identities=4% Similarity=-0.036 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
++..+...+...|++++|+..++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.00018 Score=53.02 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHH
Q 008708 355 SDMEGAEKFFRRLKQDGFV-PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+. .|+ ......+..+|.+.|++++|+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555443210 1223333345555555555555555544 211 111 2222333445555555555555
Q ss_pred HHHH
Q 008708 433 WYKE 436 (557)
Q Consensus 433 ~~~~ 436 (557)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.00016 Score=53.21 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008708 110 GDFNKAEKVLSFMNKKGYA-PSVVSHTALMEAYGRGGRYKNAEAIFRR 156 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 156 (557)
|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444555555554443210 0222333344445555555555555444
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.002 Score=59.80 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR-GGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
.+|..++....+.+..+.|+.+|.+..+.+ ..+...|-.....-.. .++.+.|..+|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999888653 2234445444444223 56677799999988776 45577788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPD---QKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
+...|+.+.|..+|++.+. .++++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999874 22222 258888888888889999988888888764
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0023 Score=59.47 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEML----DAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRD----R-CSPDIC 342 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 342 (557)
.|..|.+.|.-.|+++.|+...+.-+ +-|-+ .....+..|.+++.-.|+++.|.+.|+.-... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46666666777777777776665432 22211 12335667777777778888887777654321 1 112334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQD-----GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
+..+|...|.-..++++|+.++.+-+.. ...-....+.+|..+|...|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556677777777777787777653321 122345667778888888888888877766654
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.02 Score=57.81 Aligned_cols=162 Identities=10% Similarity=0.035 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 008708 302 VRPTHKAYNILLDAFAIS--G---MVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNA--------SDMEGAEKFFRRL 367 (557)
Q Consensus 302 ~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~m 367 (557)
.+.+...|...+.+.... + ....|..+|++..+. .|+ ...|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345556666666654322 2 255677777776655 233 23333333322221 1223344444443
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 368 KQD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 368 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
... ..+.+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|...++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 13445677777777777778888888888888875 46778888888888888888888888888876 45665
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Q 008708 447 KAKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
.+|.. ...+.-.-+.+...-++.
T Consensus 487 pt~~~-~~~~~f~~~~~~~~~~~~ 509 (517)
T PRK10153 487 NTLYW-IENLVFQTSVETVVPYLY 509 (517)
T ss_pred chHHH-HHhccccccHHHHHHHHH
Confidence 55432 222222334444444433
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00013 Score=41.72 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKG 126 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 126 (557)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.00011 Score=42.00 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGP 162 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 162 (557)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887663
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.033 Score=46.22 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG---FVPNVITY 379 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 379 (557)
.|+...-..|..+....|+..+|...|++....-...|....-.+.++....+++..|...++.+.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555555666666666666666666666554444455555556666666666666666666655432 1122 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
-.+...+...|.+..|..-|+..... -|+...-......+.+.|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 33455555566666666666666553 34443333334444555555554433
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.0085 Score=60.45 Aligned_cols=142 Identities=7% Similarity=-0.047 Sum_probs=103.3
Q ss_pred CCCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 008708 335 DRCSPDICSYTTMLSAYVNA--S---DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN--------NLEKMMEIYDK 401 (557)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~ 401 (557)
...+.+...|...+.+.... + +...|..+|++..+.. |-+...|..+..++.... +...+.+...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34467888898888875443 2 3779999999999874 444566666555544321 23344444444
Q ss_pred HHHC-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 402 MRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 402 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
.... ....++..|..+.-.....|++++|...++++++ +.|+...|..+...+...|+.++|.+.+++....++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4332 2344567888887777778999999999999999 45788889999999999999999999999987666643
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.0074 Score=47.33 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLF 176 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~ 176 (557)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.++++.....+. .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455566677888888888888887775443 345666777788888888888888877664322 1222223334466
Q ss_pred HHcCCHHHHHHHHHHhH
Q 008708 177 VEANKFKEAEEVFMTLL 193 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~ 193 (557)
...|+.++|.+.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77788888887776654
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0029 Score=58.70 Aligned_cols=143 Identities=16% Similarity=0.231 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777777777777888888888887442 2234445544444333 56666688888887765 46677777777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQ---TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+.+.++.+.|..+|++.... +.++. ..|...+.-=.+.|+++.+..+.+++.+ ..|+...+..+..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 88888888888888888754 23222 4777777777778888888888888877 3455333433443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.45 E-value=0.082 Score=47.79 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677778887777777777764 122233455666677777777777776665443
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.44 E-value=0.0039 Score=53.29 Aligned_cols=104 Identities=17% Similarity=0.342 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008708 304 PTHKAYNILLDAFAI-----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 378 (557)
Q Consensus 304 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (557)
.+..+|..+++.|.+ .|..+=....++.|.+.|+..|..+|+.|+..+-+ |.+ .|....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~f 108 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNFF 108 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccHH
Confidence 355555555555543 24555556666666666777777777777666543 221 111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
..+...| -.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 109 -Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 -QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 12346678888888888888888888888888876655
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.41 E-value=0.06 Score=48.67 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA---YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
...+-.....+...|++++|...|+++...- +-+... .-.++.++.+.+++++|...+++..+........-+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333344555667788888888888887653 222222 245566777888888888888887765322222233333
Q ss_pred HHHHHH--cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008708 348 LSAYVN--AS---------------D---MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 407 (557)
Q Consensus 348 i~~~~~--~g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (557)
+.+.+. .+ + ..+|+..|+.+++. -|+ ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH--
Confidence 333221 11 1 12344444444443 222 22334444433333321
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 408 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 408 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
=...--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111224556688889999999888888863 222334567777788999999999988776553
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.0025 Score=56.96 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=51.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
.+.+++.+|+..|.+.++.. +.|++.|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 34555555555555555442 3345555555555666666666555555555443 233445666666666666666666
Q ss_pred HHHHHHHHCCCCcCHHHHH
Q 008708 397 EIYDKMRVNGIKPNQTIFT 415 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~ 415 (557)
+.|++.++ +.|+-.+|-
T Consensus 170 ~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHhhhc--cCCCcHHHH
Confidence 66666554 344444443
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0042 Score=53.09 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=70.0
Q ss_pred CCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 008708 94 FNEMDFLMLITAYGKQ-----GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG----------------GRYKNAEA 152 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~ 152 (557)
.+..+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3567777778777754 77888888999999999999999999999986431 23467888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 153 IFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 153 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
++++|...|+.||..++..++..+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888766554
No 184
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.21 Score=50.75 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+. .+.-|...+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44444555556666666666655543 4566666666666666666665544433322 1344555666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
+.|+.++|.+++-+... .. -...+|.+.|++.+|..+-
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66666666666655421 11 2344455555555554443
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.37 E-value=0.018 Score=47.77 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 208 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (557)
|++.--..|..++...|+..+|...|++...--.--|......+.++....+++..|...++.+.+....+-.||. .-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 4444445555555555555555555555544322334455555555555555555555555555543333333332 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHhcccCCHHHHH
Q 008708 209 MMIYMYKKAGGYEKARKLFALMAERGVQQS-TVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~a~ 256 (557)
.+.+.+...|.+..|..-|+.....-..|. ...|..++...|+.+++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 344555555555555555555554433232 233444444455444443
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.016 Score=52.33 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCcCHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIF 414 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~ 414 (557)
+-|...|-.|..+|...|++..|...|.+..+.. +++...+..+..++.... ...++..+|+++...+ +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4577788888888888888888888888887763 567777777777666543 3567788888888754 4456677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
..+...+...|++.+|...|+.|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777788888888888888888874
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.014 Score=52.62 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=89.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK---DFDSAVVWYKEMESC 440 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 440 (557)
++.-...+ |-|...|..|..+|...|++..|..-|.+..+.. ++++..+..+..++..+. ...++..+|++++..
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 33334444 7799999999999999999999999999999863 567888888888765433 346889999999984
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 441 GFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 441 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
. +-|......|...+...|++.+|...++.|.+..+
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 3 44556788888899999999999999999986655
No 188
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.27 E-value=0.068 Score=50.73 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCC--CCHhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH
Q 008708 58 LPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWD--FNEMDFLMLITAYGK---QGDFNKAEKVLSFMNKKGYAPSVV 132 (557)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~ 132 (557)
...+.+...++.++...+|+...++.+-+.....++ .++.+-....-++-+ .|+.++|++++..+....-.++..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344445555555555556666666655555543211 112222233334444 556666666665544443345555
Q ss_pred HHHHHHHHH
Q 008708 133 SHTALMEAY 141 (557)
Q Consensus 133 ~~~~li~~~ 141 (557)
+|..+.+.|
T Consensus 219 ~~gL~GRIy 227 (374)
T PF13281_consen 219 TLGLLGRIY 227 (374)
T ss_pred HHHHHHHHH
Confidence 555555544
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.26 E-value=0.023 Score=44.56 Aligned_cols=18 Identities=0% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 008708 384 KGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~ 401 (557)
..+...|++++|..++++
T Consensus 46 stlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 46 STLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 333333333333333333
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.0012 Score=46.35 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEME 438 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~ 438 (557)
.+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444432 222344444444444444 3444444444444
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.20 E-value=0.0013 Score=46.16 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=36.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQS 159 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 159 (557)
+..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455566666666666666666666665553 224555666666666666 46666666665544
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.20 E-value=0.0016 Score=45.12 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
+...+.+.|++++|.+.|+++.+.. +-+...|..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666666666666654 335556666666666666666666666666553
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.19 E-value=0.0017 Score=44.95 Aligned_cols=55 Identities=7% Similarity=0.216 Sum_probs=24.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..+...|++++|...|+++++.. +-+...+..+..++...|++++|..+|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555444432 22344444444444455555555555544443
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0019 Score=45.15 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 389 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|++++|.++|+++.... +-+...+..++.+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444443321 22333333444444444444444444444443
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.0021 Score=44.95 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
...|++++|+++|+.+.... |-+...+..++.+|.+.|++++|..+++++... .|+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 46788888888888887764 557777778888888888888888888888764 455444433
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.42 Score=48.23 Aligned_cols=323 Identities=11% Similarity=0.097 Sum_probs=165.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK-GYA--------PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 164 (557)
|.+..|..|.......-.++-|...|-+.... |++ .+...-.+=+.+| -|++++|.++|-+|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 56777877777777777777777776554432 111 0111111222222 478888888887764331
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK--PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 242 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 242 (557)
..+..+.+.|++-...++++.- .++.. .-...++.+...++....|++|.+.|...... .-+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e~~ 828 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ENQ 828 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HhH
Confidence 2355667778887777776543 11111 11357888899999999999999888664321 111
Q ss_pred HHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008708 243 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMV 322 (557)
Q Consensus 243 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 322 (557)
..-+-....+++.+.+.+. ++-+....-.+..++.+.|.-++|.+.|-+. + .|. +.+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHH
Confidence 1111111222222222222 2334455566777888888888877766543 1 122 234556667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHH----HHH
Q 008708 323 DQARTVFKCMRRDRCSPDICSY--------------TTMLSAYVNASDMEGAEKFFRRLKQ----DGFVPNVI----TYG 380 (557)
Q Consensus 323 ~~A~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~----~~~ 380 (557)
.+|.++-+... -|.+.+. .-.|..+.+.|+.-.|.+++.+|.+ .+.+|-.. ...
T Consensus 895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~ 970 (1189)
T KOG2041|consen 895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLG 970 (1189)
T ss_pred HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHH
Confidence 77777655432 1122111 1123345556666666666666643 23332211 111
Q ss_pred HH-HHHH----------HHcCCHHHHHHHHHHHHHC---CC----Cc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 008708 381 TL-IKGY----------AKVNNLEKMMEIYDKMRVN---GI----KP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMES- 439 (557)
Q Consensus 381 ~l-~~~~----------~~~g~~~~a~~~~~~m~~~---~~----~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~- 439 (557)
++ +.-+ -+.|..++|..+++.-.-. .+ -. ...+|..+..--...|..+.|++.--.+.+
T Consensus 971 AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DY 1050 (1189)
T KOG2041|consen 971 ALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDY 1050 (1189)
T ss_pred HHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccH
Confidence 11 1111 1235555555544432210 00 01 123344444445567888888776544443
Q ss_pred CCCCCCHHHHHHHHHH
Q 008708 440 CGFPPDQKAKNILLSL 455 (557)
Q Consensus 440 ~~~~p~~~~~~~l~~~ 455 (557)
..+-|...+|..+.-+
T Consensus 1051 Ed~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1051 EDFLPPAEIYSLLALA 1066 (1189)
T ss_pred hhcCCHHHHHHHHHHH
Confidence 2345555666655543
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.02 E-value=0.16 Score=44.70 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAISGMVDQA 325 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A 325 (557)
.+...|.+.|.+..|..-++.+++. -|+. .....++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3566788888888888888887765 2332 2445666777777766643
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.043 Score=48.20 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HH
Q 008708 275 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM-----LS 349 (557)
Q Consensus 275 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i~ 349 (557)
+.++..+.-.|.+.-...++++.++...+.++.....|+..-.+.|+.+.|...|++..+.....+..+++.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3444444455555555555555555444445555555555555566666666666554433222222222222 22
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
.|.-++++..|...+.+....+ +.|+...|.-.-+....|+...|.+.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334445555555555444433 33344444333334444555555555555554
No 199
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.5 Score=48.13 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR--YKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
.+++-+...+.+..|+++-..+...-.. ....|......+.+..+ -+++++..++=.+... ....+|..+.+....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 3566666677777777766655432111 13445555555555422 1223333322222211 234456666666666
Q ss_pred cCCHHHHHHHHH
Q 008708 179 ANKFKEAEEVFM 190 (557)
Q Consensus 179 ~g~~~~A~~~~~ 190 (557)
.|+++-|..+++
T Consensus 520 ~GR~~LA~kLle 531 (829)
T KOG2280|consen 520 EGRFELARKLLE 531 (829)
T ss_pred cCcHHHHHHHHh
Confidence 777777766654
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.24 Score=43.73 Aligned_cols=162 Identities=9% Similarity=0.024 Sum_probs=115.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (557)
+......+..++.|++-.. .+-+.++..+.-.|.+.-....+++.++...+.++.....+++.-.+.|+.+.|
T Consensus 159 ~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a 231 (366)
T KOG2796|consen 159 LEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTA 231 (366)
T ss_pred HHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHH
Confidence 3333334555666655432 345667777777888999999999999887777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008708 361 EKFFRRLKQDGFVPNVITYG-----TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYK 435 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 435 (557)
..+|++..+..-+.|..+++ .....|.-+.++..|...+.+....+ +.|+...|.-.-+..-.|+...|++.++
T Consensus 232 ~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 232 EKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 99999876643344444433 33444556778889999998888654 3455555655555666899999999999
Q ss_pred HHHhCCCCCCHHHHHHH
Q 008708 436 EMESCGFPPDQKAKNIL 452 (557)
Q Consensus 436 ~m~~~~~~p~~~~~~~l 452 (557)
.|.. ..|.+.+.+.+
T Consensus 311 ~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 311 AMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHhc--cCCccchhhhH
Confidence 9987 46666555433
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.96 E-value=0.34 Score=45.39 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAG-VRPTHK--AYNILLDAFA---ISGMVDQARTVFKCMRRDRCSPDICS- 343 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~- 343 (557)
...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. -.-+...|...-.+..+ +.|+..-
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchH
Confidence 4567788888999999999999998766543 233332 1122222211 12344555554444433 3555433
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPN-QTIFTTIMDAY 421 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~ 421 (557)
-.....++.+.|+..++-.+++.+.+.. |.+..+ ..|.+...-+.+..-+++..+. .++|| ......+..+.
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aA 339 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 2334568899999999999999998874 444433 2344333334444444444321 23444 66777788888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHhcCCCCCCCCccc
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-TADERNEANELLGNFNHPNNEPGING 483 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~ 483 (557)
...|++..|..--+.... ..|....|..+...-. ..|+-.+++..+-+..+...+|....
T Consensus 340 lda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 340 LDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred HhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 899999988887777765 5788888888887654 45999999999988876655565443
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.031 Score=46.19 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHHHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAKN 450 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 450 (557)
...++..+...|++++|..+++.+.... +.+...|..++.+|...|+..+|.+.|+.+. +.|+.|++.+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456666777888888888888887653 4567788888888888888888888887764 357777776543
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.039 Score=50.32 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 132 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
..|...+..+.+.|++++|+..|+.+++..+... +.++..+..+|...|++++|...|+.+++... ..+.....+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHH
Confidence 3455555555667899999999999887654321 35677788888899999999999999885321 11223445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 210 MIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
++.++...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677788889999999999888775
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=96.88 E-value=0.098 Score=43.02 Aligned_cols=92 Identities=14% Similarity=0.013 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 425 (557)
....-+...|++++|..+|+-+...+ +-+..-+..|..+|-..+++++|...|......+ .-|+..+-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 34445567888888888888877665 4566667788888888888899988888876543 235555666777888888
Q ss_pred ChhHHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMES 439 (557)
Q Consensus 426 ~~~~A~~~~~~m~~ 439 (557)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88999888888876
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.88 E-value=0.1 Score=51.82 Aligned_cols=36 Identities=11% Similarity=0.380 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 008708 226 LFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261 (557)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~ 261 (557)
-+++++++|-.|+...........|++.+|-++|.+
T Consensus 622 EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345555666666666666666666666666665543
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.85 E-value=0.26 Score=43.33 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=31.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
....+...|++.+|.+.|+.+...-+ +.+--......++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445566666666666666654311 11112234445566666666666666666666554
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.84 E-value=0.038 Score=50.40 Aligned_cols=94 Identities=11% Similarity=0.025 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPNQTIFTTI 417 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l 417 (557)
|...+..+.+.|++++|...|+.+.+.. |+ ...+..++.+|...|++++|...|+.+.+.- -+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344566666666666665542 22 2345556666666666666666666666431 11123344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 008708 418 MDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+.++...|+.++|..+|+.+++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666665
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.5 Score=44.68 Aligned_cols=269 Identities=12% Similarity=-0.002 Sum_probs=147.3
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRY 147 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 147 (557)
.+.+..++..|+..+..+++..+ .+..-|..-...+...|++++|.--.+.-.+. .|. ...+.-.-.++...+..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 34556678889999988888752 44555666777777788888877665554443 121 22333333444444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHH
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM-IYMYKKAGGYEKARKL 226 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~ 226 (557)
.+|.+.++. ...+ ....|+..++.+.. ...-+|.-..+-.| ..++...|++++|...
T Consensus 134 i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~--s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 134 IEAEEKLKS---------KQAY-----------KAANALPTLEKLAP--SHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHhhh---------hhhh-----------HHhhhhhhhhcccc--cccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 444444431 1111 11112222222221 00111222222222 2244445555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHhc-----ccCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHH
Q 008708 227 FALMAERGVQQSTVTYNSLMS-----FETNYKEVSKIYDQMQRAGLQPD-----------VVSYALLINAYGKARREEEA 290 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~-----~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A 290 (557)
--..++.. ....+...++ ...+.+.+...|++.+..++.-. ...+..-.+-..+.|++..|
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 54444431 1112222222 13445555555555544321100 11122234456789999999
Q ss_pred HHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHH
Q 008708 291 LAVFEEMLDA---GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC---SYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 291 ~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 364 (557)
.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--+....- |.. .|..-..++...+++++|.+-|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998764 34556667888888889999999999988887754 433 2333344666778899999999
Q ss_pred HHHHhC
Q 008708 365 RRLKQD 370 (557)
Q Consensus 365 ~~m~~~ 370 (557)
+...+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 887765
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.77 E-value=0.0097 Score=42.24 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=28.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 385 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555542 23344455555555555555555555555554
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.76 E-value=0.54 Score=44.84 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=54.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG---YAPSVVSHTALMEAYGR---GGRYKNAEAIFRRMQSSGPRPSALT 168 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 168 (557)
++.+...++-.|....+++..+++.+.+...- +..+...--...-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445566667888888888888888887641 11122223344455666 7888888888888665556677778
Q ss_pred HHHHHHHH
Q 008708 169 YQIILKLF 176 (557)
Q Consensus 169 ~~~ll~~~ 176 (557)
|..+.+.|
T Consensus 220 ~gL~GRIy 227 (374)
T PF13281_consen 220 LGLLGRIY 227 (374)
T ss_pred HHHHHHHH
Confidence 87777665
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.71 E-value=0.55 Score=44.26 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+.+..+.-+...|+...|.++-++.. .|+..-|...+.+++..++|++..++-.. +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45666777788888888888876653 57888888899999999999887765332 123477888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
+.|+..+|..++..+ ++ ..-+..|.+.|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHH
Confidence 999999988888762 22 223445566666666655543
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.67 E-value=0.008 Score=42.67 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 162 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 162 (557)
..|.+.+++++|.++++.+...+ |.+...|.....++...|++++|.+.|+...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45666777777777777776664 33566666666777777777777777777666443
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.52 E-value=0.0094 Score=42.98 Aligned_cols=65 Identities=22% Similarity=0.411 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 167 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK---PD-QKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.+|..+...|...|++++|+..|+++++. ..... |+ ..+++.+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666666665543 11111 11 34566777777778888888877776553
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.52 E-value=0.012 Score=42.39 Aligned_cols=61 Identities=18% Similarity=0.453 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVN----GI-KPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555421 10 111 3445555555666666666666655544
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.47 E-value=0.81 Score=43.17 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
+.+..+.-+...|+...|.++-++.. -|+..-|...+.+++..++|++-.++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888877766553 57888899999999999999887776432 123467888899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998887772 2 24456678888999888776544
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.46 E-value=0.037 Score=45.75 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NGIKPNQTIFT 415 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 415 (557)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.+.|+++.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556667778888888888888888765 66778888888888888888888888887753 47788776543
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.40 E-value=0.99 Score=43.39 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=46.5
Q ss_pred hhccchHHHHHHHHHHHhc-CCC-----CCC------HhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHHH
Q 008708 71 KQLKKWNVVSEVLEWLRIQ-SWW-----DFN------EMDF-LMLITAYGKQGDFNKAEKVLSFMNKKGY----APSVVS 133 (557)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~-~~~-----~~~------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~~~~~~ 133 (557)
.+.+.+++|.+.+..-..+ ... +.+ ...+ +..++++...|++.+++.+++++..+=+ .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4457788888877533332 111 111 1111 2578889999999999999998876533 357888
Q ss_pred HHHHHHHHHh
Q 008708 134 HTALMEAYGR 143 (557)
Q Consensus 134 ~~~li~~~~~ 143 (557)
|+.++-.+++
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8885544433
No 218
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.31 E-value=0.088 Score=41.79 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
..++..++.++++.|+.+....+++..-. +.++... ..+. .-....+.|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566677777777777766666665432 1111100 0000 01123456788888888888
Q ss_pred HHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 008708 421 YGKNKDFDSAVVWYKEMES-CGFPPDQKAKNILLSLA 456 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~ 456 (557)
|+..|++..|+++++...+ .+++.+..+|..|+.-+
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888887765 56666777888777644
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.23 E-value=0.18 Score=41.57 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=54.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
....-+...|++++|..+|.-+.-.++ -+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 344445556666666666666655442 2455566666666666677777776665544432 23333445556666677
Q ss_pred CHHHHHHHHHHhHh
Q 008708 181 KFKEAEEVFMTLLD 194 (557)
Q Consensus 181 ~~~~A~~~~~~~~~ 194 (557)
+.+.|...|..+++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777766653
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.12 Score=49.84 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555556666666666666665555442 221 2355555555555666666655555554
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.96 E-value=0.16 Score=40.36 Aligned_cols=97 Identities=9% Similarity=0.117 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
|..++..++.++++.|+.+....+++..= |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45788999999999999999988887653 2222210 00000 1123456788888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 008708 385 GYAKVNNLEKMMEIYDKMRV-NGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~ 421 (557)
+|+..|++..|+++.+...+ .+++.+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99888999999998888774 46777788888888644
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.93 E-value=2.3 Score=43.25 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=77.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 278 INAYGKARREEEALAVFEEMLDA----GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
|..+.+.|..-.|-+++.+|.+. +.++-..--.-++.++. ..+..++++-.+.....|...+... +..
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence 45567777777777777777432 33322211111222221 1223444444555544444333221 223
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
.|-..++-.+.+.... -.....|-.|..-....|.++.|++.--.+.+. .+-|...+|..+.-+-+....+...-+
T Consensus 1002 s~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred hhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 3334444444443332 124455556666666778888887765554432 456677788777766665555555555
Q ss_pred HHHHHHh
Q 008708 433 WYKEMES 439 (557)
Q Consensus 433 ~~~~m~~ 439 (557)
.|-++..
T Consensus 1079 AfmkLe~ 1085 (1189)
T KOG2041|consen 1079 AFMKLEA 1085 (1189)
T ss_pred HHHHHHh
Confidence 5555443
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.15 Score=48.07 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK-NILLSL 455 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~ 455 (557)
.++..|.-+|.+.+.+..|++...+.++.+ ++|....-.=..+|...|+++.|...|+++++ +.|+.... ..++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456778889999999999999999999875 66788887888899999999999999999998 67766554 444444
Q ss_pred HhhcCCHHH-HHHHHHhcCC
Q 008708 456 AKTADERNE-ANELLGNFNH 474 (557)
Q Consensus 456 ~~~~g~~~~-a~~~~~~~~~ 474 (557)
-.+..+..+ ..+++..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444444 3677777764
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.86 E-value=0.25 Score=38.51 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=44.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 220 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (557)
++..|+.+.|++.|.+.+..-+ -.+..|+.-..++.-.|+.++|++-+.+.++.....-..--..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3445555555555555554422 245555555555555555555555555555421100000011222233445556666
Q ss_pred HHHHHHHHHHHHcC
Q 008708 221 EKARKLFALMAERG 234 (557)
Q Consensus 221 ~~A~~~~~~~~~~~ 234 (557)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555443
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.84 E-value=0.18 Score=48.82 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
+.+...++.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|++++|+..++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 4467889999999999999999999999998864 553 458999999999999999999999999752 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHhCCC
Q 008708 414 FTTIMD--AYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 414 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
|..+.. .+....+..+..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 12223344566777777776654
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.22 Score=46.99 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=85.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKK-----GYAP---------SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~-----g~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 167 (557)
-.+.|.+.|++..|..-|++.... +.++ -..+++.+.-+|.+.+++..|++.-.+.+..++. |.-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh
Confidence 356788889999998888875432 1111 2346777888888888888888888888877543 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK-ARKLFALMAE 232 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 232 (557)
.+-.-..++...|+++.|+..|+++++.. |.|..+-+.|+.+-.+.....+ ..++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~----P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE----PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777788888888888888888887532 3344445555555555444433 3666666654
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.65 E-value=2.2 Score=41.04 Aligned_cols=128 Identities=16% Similarity=0.267 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF-TTIMD 419 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~ 419 (557)
..|...+++-.+..-.+.|..+|-+..+.+ +.++...+++++..++ .|+...|..+|+.-..+ .||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778888899999999998887 6688888999988776 57888999999886654 3454444 55666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFPPD--QKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
-+.+.++-+.|..+|+..+.. +..+ ..+|..++..-..-|+...+..+-+++.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 777889999999999976542 2333 3578888888888888888777666654
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=1.7 Score=39.57 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=59.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 106 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 185 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 185 (557)
....|++.+|..+|....... +-+...--.++.+|...|+++.|..++..+-..-..........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344556666666666655543 2234455556666666666666666666553321111112222223334444444433
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 186 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..+-.++-. -+.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333321 123555555666666666666666666555543
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.63 E-value=1.5 Score=38.97 Aligned_cols=198 Identities=19% Similarity=0.084 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS- 349 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~- 349 (557)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555555556666555555555431 122333444455555555555666666666555432222 111112222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCC
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 426 (557)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45566666666666666544210 0122333333333455566666666666665532 22 24555555556666666
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 427 FDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
++.|...+...... .|+ ...+..+...+...+..+++...+.+..
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666552 232 2333333333335555666666555544
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.58 E-value=2.4 Score=40.93 Aligned_cols=387 Identities=16% Similarity=0.188 Sum_probs=199.9
Q ss_pred HHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHH--HHHHHhcCChhHHHHHHHHHHhC--CCCC------------
Q 008708 66 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLML--ITAYGKQGDFNKAEKVLSFMNKK--GYAP------------ 129 (557)
Q Consensus 66 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--g~~~------------ 129 (557)
.++..--++..+........+.+..+ ...|..| .-.+.+.+.+++|.+.+....+. +..|
T Consensus 51 rilnAffl~nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 51 RILNAFFLNNLDLMEKQLMELRQQFG----KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 33444445556655666666666543 2233333 33345789999999988877655 3222
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 205 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 205 (557)
|...=+..+.++...|++.++..+++++... ....+..+|+.++-.+.+. +|-++.+.....+-|+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd-- 196 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD-- 196 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH--
Confidence 2222355677888999999999999888654 3346888888766555432 3333322112222222
Q ss_pred HHHHHHHHHHHcCC-HHH--------HHHHHH----------------------HHHHcCCCCCHHHH-HHHhc-ccCCH
Q 008708 206 MFHMMIYMYKKAGG-YEK--------ARKLFA----------------------LMAERGVQQSTVTY-NSLMS-FETNY 252 (557)
Q Consensus 206 ~~~~l~~~~~~~g~-~~~--------A~~~~~----------------------~~~~~~~~~~~~~~-~~ll~-~~~~~ 252 (557)
|.-++-.|.+.=+ ++. +..++. .....-+.|+.... ..+.. ...+.
T Consensus 197 -yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~ 275 (549)
T PF07079_consen 197 -YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDP 275 (549)
T ss_pred -HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcCh
Confidence 2223333322211 110 111111 11112222221111 11111 12233
Q ss_pred HHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHH----
Q 008708 253 KEVSKIYDQMQRAGLQP----DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI-------LLDAFA---- 317 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~---- 317 (557)
+++..+-+.+....+.+ -..++..+++...+.++...|.+.+.-+.-. .|+...-.. +-+..+
T Consensus 276 e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~ 353 (549)
T PF07079_consen 276 EQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDE 353 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchH
Confidence 34433333333221111 1345666667777777777777777665542 344332211 112222
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHH-
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTML---SAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLI----KGYAK- 388 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~----~~~~~- 388 (557)
..-+...-+.+|+.+....+... ..-..++ .-+-+.|. -++|+++++.+.+-. +-|...-|.+. ..|..
T Consensus 354 ~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qa 431 (549)
T PF07079_consen 354 SYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQA 431 (549)
T ss_pred HHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence 11122333444544444322111 1111122 23344455 788999999887742 33443333222 22222
Q ss_pred --cCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 008708 389 --VNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMDA--YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 389 --~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 460 (557)
...+.+-..+-+-+.+.|++|- ...-|.+.+| +...|++.++.-.-.-+.+ +.|++.++..++-.+....
T Consensus 432 Ls~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 432 LSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENK 509 (549)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHh
Confidence 1223333444344446677764 3445556554 4578999998877777766 7899999999999999999
Q ss_pred CHHHHHHHHHhcC
Q 008708 461 ERNEANELLGNFN 473 (557)
Q Consensus 461 ~~~~a~~~~~~~~ 473 (557)
++++|..++.++.
T Consensus 510 ~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 510 RYQEAWEYLQKLP 522 (549)
T ss_pred hHHHHHHHHHhCC
Confidence 9999999998875
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.57 E-value=2.2 Score=40.33 Aligned_cols=281 Identities=16% Similarity=0.103 Sum_probs=168.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA--YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 186 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 186 (557)
.|+-..|.+.-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|... ++.-..-+..|.-..-+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 46666676666554321 12233334444433 33467888888888887652 2111222233333345667777777
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHhcc------cCCHHHHHH
Q 008708 187 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG-VQQSTVT--YNSLMSF------ETNYKEVSK 257 (557)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~ll~~------~~~~~~a~~ 257 (557)
++-+..... -+.-...+..++...+..|+++.|+++++.-+... +.++..- -..|+.. ..+...|..
T Consensus 175 ~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 175 HYAERAAEK----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHhh----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 777776532 23334667777888888888888888887765432 3333321 1122221 234444444
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 008708 258 IYDQMQRAGLQPDVV-SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD- 335 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 335 (557)
.-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+. +..-+++..+.
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHH
Confidence 4444433 345533 23344578899999999999999998874 4443332 2334556653 33333332211
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC
Q 008708 336 RC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK-VNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 336 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~ 405 (557)
.. +.+..+...+..+-...|++..|..--+..... .|....|..|.+.-.- .|+-.++...+-+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 11 335677778888888999999888877766654 6888888888877654 49999999999988864
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=1.1 Score=45.14 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDI------CSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITY 379 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (557)
..++....=.|+-+.+++.+.+..+.+--..+ ..|+..+..++. ..+.+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555555566666666666665543211111 123333333332 45677888888888875 4665554
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHHHHHC--CC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 380 G-TLIKGYAKVNNLEKMMEIYDKMRVN--GI-KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 380 ~-~l~~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
. .-.+.+...|++++|++.|++.... .. ......+--+...+.-.++|++|...|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4 3456667788999999999876631 11 1223455566777888899999999999998743 3445555555543
Q ss_pred -HhhcCCH-------HHHHHHHHhcC
Q 008708 456 -AKTADER-------NEANELLGNFN 473 (557)
Q Consensus 456 -~~~~g~~-------~~a~~~~~~~~ 473 (557)
+...|+. ++|.++++++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4567777 88888887764
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.47 E-value=0.94 Score=35.57 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
.+...++.....|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555554322 44555555555555555555555555555555543
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=1.7 Score=38.21 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
..|.-...+|....++++|...+.+..+- ...+. ++..+...++.|.-+.+++.+. +--+..|+--...|...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr----slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR----SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc----cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 34444555666667777776666555421 00111 1122223344444455555442 11123345555667777
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 285 RREEEALAVFEEMLDA--GVRPTHK--AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 285 g~~~~A~~~~~~~~~~--~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (557)
|.++.|-..+++.-+. ++.|+.. .|..-+......++...|..+ +..+...+++...+++|
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHH
Confidence 7777666666554321 1233321 222222222222222222222 33334456666666665
Q ss_pred HHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 361 EKFFRRLKQ----DGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG---IKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 361 ~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
-..+.+-.. ..--++ ...|...|-.+....++..|...++.-...+ -+-+..+...|+.+| ..|+.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 555443211 111122 2334555555666667777777777644321 122456666777666 4566666544
Q ss_pred HH
Q 008708 433 WY 434 (557)
Q Consensus 433 ~~ 434 (557)
++
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 43
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.27 E-value=0.18 Score=44.92 Aligned_cols=106 Identities=16% Similarity=0.356 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 303 RPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 377 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (557)
+-|..+|...+..+... +.++-....++.|.+.|+..|..+|+.|++.+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 34556666666655432 455666666677777777777777777776554321 12211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
.+....-.|-+ +-+-+++++++|..+|+.||..+-..++.++++.+-.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 12222222222 2345788999999999999999999999999887764
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.23 E-value=1.7 Score=43.72 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=113.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHH----cCCHHHHH
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK------AYNILLDAFAI----SGMVDQAR 326 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~ 326 (557)
.+|..+... ++| .+..+++..+=.|+-+.+++.+.+..+.+---.+. +|..++..++. ....+.|.
T Consensus 178 G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 344444443 232 34566777777888888888888876532111111 23444433332 45688899
Q ss_pred HHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTM-LSAYVNASDMEGAEKFFRRLKQDG---FVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
++++.+.+. -|+...|... .+.+...|++++|++.|++..... .......+--++..+.-.++|++|.+.|..+
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999999876 5665555433 346677899999999999765421 1123344556777888899999999999999
Q ss_pred HHCCCCcCHHHHHHHHH-HHHhcCCh-------hHHHHHHHHHHh
Q 008708 403 RVNGIKPNQTIFTTIMD-AYGKNKDF-------DSAVVWYKEMES 439 (557)
Q Consensus 403 ~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~m~~ 439 (557)
.+.. ..+..+|..+.. ++...|+. ++|..+|.+...
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8753 334455554443 34567777 888888887753
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.06 E-value=1.5 Score=35.65 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
.++..+...+.+.....+++.+...+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555544443 2344444444444444
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=1.1 Score=44.30 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred HHHhcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 105 AYGKQGDFNKAEKVLS--FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 105 ~~~~~g~~~~A~~~~~--~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
...-.|+++++.+..+ .+.. .+ ...-.+.++..+-+.|..+.|+++-. |+. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 3344567777655554 1111 11 24457777777778888888877632 222 234455677888
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
+.|.++.+.. .+...|..|......+|+++-|.+.|.+..
T Consensus 335 ~~A~~~a~~~---------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 335 DIALEIAKEL---------DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHCCCC---------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHhc---------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 8887764332 466788888888888888888888876644
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.99 E-value=4.6 Score=40.81 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
+..+...+...+.+...+..|-++|.+|-.. ..+++.....++|++|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3344444555555666666777777666331 2355666677777777777665543
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.88 Score=40.84 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=47.9
Q ss_pred hcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGY--APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFK 183 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~ 183 (557)
+.|++..|...|....+... .-...++--|..++...|+++.|..+|..+.+.-+. --+.++..|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666666655421 011334445666666666666666666666554322 12345555556666666666
Q ss_pred HHHHHHHHhHh
Q 008708 184 EAEEVFMTLLD 194 (557)
Q Consensus 184 ~A~~~~~~~~~ 194 (557)
+|...|+++++
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.94 E-value=0.25 Score=44.08 Aligned_cols=117 Identities=17% Similarity=0.271 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 268 QPDVVSYALLINAYGKA-----RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 342 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 342 (557)
+.|..+|...+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 45778888888887543 5677788888999999999999999999987644322 111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN-LEKMMEIYDKMR 403 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 403 (557)
.+....-.|-+ +-+-+++++++|...|+-||..+-..|++++.+.+- ..+..++.--|.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 12222222222 334588999999999999999999999999988775 333344433343
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.90 E-value=2.7 Score=41.17 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILL 453 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~ 453 (557)
..+=..|..++.+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+.-+...+.+. ..|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3333457777788899999999998887542 1123456778888888999999998888887543322222 3455544
Q ss_pred HHHhhcCC---------------HHHHHHHHHhcCCCCCC
Q 008708 454 SLAKTADE---------------RNEANELLGNFNHPNNE 478 (557)
Q Consensus 454 ~~~~~~g~---------------~~~a~~~~~~~~~~~~~ 478 (557)
-.++..++ -..|.+.+.++.+.++.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 33333333 12355667776655553
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.87 E-value=0.89 Score=36.60 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 59 PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG 126 (557)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 126 (557)
|...++......-..|++..|.+.|+.+..+-++ +.....-..|+.+|.+.|++++|...+++.++..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4445555555556667777777777777766543 2334455567777777777777777777777664
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.73 E-value=0.11 Score=32.37 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL 137 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 137 (557)
.+..+...|.+.|++++|+++|+++.+.. |.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 34555566666666666666666665553 2344444443
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.66 E-value=2.3 Score=39.77 Aligned_cols=131 Identities=15% Similarity=-0.023 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVR-----PTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPDICSY 344 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 344 (557)
..++..++...+.++++++.|+...+.-.. ....++-.|...|....|+++|.-+..+..+. ++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 345666777777788888888876543211 12236777778888888888887666554321 211111112
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 345 -----TTMLSAYVNASDMEGAEKFFRRLKQ----DGFV-PNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 345 -----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
..+.-++...|....|.+.-++..+ .|-. ........+.+.|...|+.+.|+.-|+....
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2333456667777777777666543 3311 1233455677777778888887777776653
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.65 E-value=2.1 Score=42.45 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=76.8
Q ss_pred HHHHcCCHHHHHHHHH--HhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCH
Q 008708 175 LFVEANKFKEAEEVFM--TLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNY 252 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 252 (557)
...-.++++.+.++.. .++ ..+ .....+.++..+-+.|..+.|+.+...-..+ | .|.-.+|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll----~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------F-eLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL----PNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHR--------F-ELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG----GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH--------H-HHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhc----ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHH--------h-HHHHhcCCH
Confidence 3445677777666654 222 111 1445777888888888888888775332211 1 111123444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 332 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 332 (557)
+.|.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 444433222 12555666677777777777777666665432 344555566666666666655555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 333 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 365 (557)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (557)
...| -+|....++...|+.++..+++.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 5443 13444455555566666555554
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=1.3 Score=40.90 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=107.8
Q ss_pred HHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHc
Q 008708 244 SLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAIS 319 (557)
Q Consensus 244 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 319 (557)
.++-+.|+..+|-..++++.+. .+.|..++...=.+|.-.|+...-...++++... ..++. ..-.....++..+
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh
Confidence 3455678888888888888876 4557788888888888999998888888887653 12333 2333444455688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
|-+++|.+.-++..+-+ +.|...-.+....+.-.|+..++.++..+-... +--.-...|-...-.+...+.++.|+
T Consensus 189 g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred ccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 99999998888877654 456777778888888889999998887754332 10011112333344455568899999
Q ss_pred HHHHHHH
Q 008708 397 EIYDKMR 403 (557)
Q Consensus 397 ~~~~~m~ 403 (557)
++|+.-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9997644
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.59 E-value=0.78 Score=41.17 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=24.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVN-GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|+.++...|+++.|..+|..+.+. +-.|. +..+--+..+..+.|+.++|...|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444444444444444444444432 11111 23344444444444444444444444443
No 249
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.56 E-value=1.8 Score=34.07 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=69.2
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 256 (557)
.-.|..++..++..+... +.+..-+|-+|--....-+-+-..++++.+-+. .| ++.+++...+.
T Consensus 13 ildG~V~qGveii~k~v~------Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD-------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN------SSNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD-------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH------HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcC------cCCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------chhhcchHHHH
Confidence 345677777777777664 223333444433333333334444444333221 11 12345555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
..+-.+- .+...+..-+......|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4443321 234445566667777777777777777776532 5677777777777777777777777777776665
Q ss_pred C
Q 008708 337 C 337 (557)
Q Consensus 337 ~ 337 (557)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=94.55 E-value=4.7 Score=39.43 Aligned_cols=145 Identities=6% Similarity=0.045 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 321 MVDQARTVFKCMRRD-RCSPD-ICSYTTMLSAYVN---------ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356777777777622 22343 2333333332221 234567788888888877 77888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhhcCCHHHH
Q 008708 390 NNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK---AKNILLSLAKTADERNEA 465 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a 465 (557)
++++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++..+ +.|... .....+..|..+ ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 8899999999998875 455 56677777777788999999999999776 455442 333334455554 56777
Q ss_pred HHHHHh
Q 008708 466 NELLGN 471 (557)
Q Consensus 466 ~~~~~~ 471 (557)
..++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 776644
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.52 E-value=0.67 Score=36.24 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=63.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcC
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL---TYQIILKLFVEAN 180 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g 180 (557)
-+++..|+.+.|++.|.+.+..- |....+||.-..++.-.|+.++|++-+++..+........ +|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35567788888888888877653 4467788888888888888888888888876643222222 3333445677778
Q ss_pred CHHHHHHHHHHhHh
Q 008708 181 KFKEAEEVFMTLLD 194 (557)
Q Consensus 181 ~~~~A~~~~~~~~~ 194 (557)
+.+.|..-|+..-+
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 88888888877654
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=94.46 E-value=3.3 Score=40.51 Aligned_cols=117 Identities=14% Similarity=0.063 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008708 76 WNVVSEVLEWLRIQSWWDFN-EMDFLMLITAYGK---------QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 145 (557)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 145 (557)
...|+.+|..........|+ ...|..+..++.. .....+|.++-++..+.+ +.|..+...+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 44566667766633222222 2333333333221 123344555555555554 335556656666556666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 146 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
+++.|..+|++....++. ...+|....-.+.-.|+.++|.+.+++.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666666666666654332 333444444444456666666666666553
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.37 E-value=3.6 Score=36.74 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=97.2
Q ss_pred CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 008708 57 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHT 135 (557)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 135 (557)
..|.+.++......-..|+++.|.+.|+.+..+.++ +....+-..++.++.+.++++.|+..+++....-.......|-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 346667777777777778999999999999887654 3345566678888889999999999999887763222223344
Q ss_pred HHHHHHHhc-------CCh---HHHHHHHHHHHhCC----CCCCHHHHH------------HHHHHHHHcCCHHHHHHHH
Q 008708 136 ALMEAYGRG-------GRY---KNAEAIFRRMQSSG----PRPSALTYQ------------IILKLFVEANKFKEAEEVF 189 (557)
Q Consensus 136 ~li~~~~~~-------g~~---~~A~~~~~~m~~~~----~~~~~~~~~------------~ll~~~~~~g~~~~A~~~~ 189 (557)
.-|.+++.- .+. ..|..-|++++..= ..||...-. .+.+-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 444443321 222 33444444444431 122322211 1223455666666666666
Q ss_pred HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 190 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
+.+++.- ...+.....+-.+..+|...|-.++|.+.-.-+
T Consensus 191 ~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 191 EEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 6665421 111111233444555666666666655544333
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.37 E-value=1.8 Score=40.45 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCChhHHH
Q 008708 99 FLMLITAYGKQGDFNKAE 116 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~ 116 (557)
|..+..+.++.|.+++++
T Consensus 46 lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hccchhhhhhhHHHHHHH
Confidence 334455555555554443
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.32 E-value=2.3 Score=34.30 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 173 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 173 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
.....+.|++++|.+.|+.+...-..+ +-...+--.|+.+|.+.+++++|...++..++..+....+-|...+.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 334456666666666666665421111 112234445666666777777777776666665544333444443333
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.25 E-value=0.14 Score=31.90 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
+|..+...|.+.|++++|.++|++.++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 4555666666666666666666666665433 4444433
No 257
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.24 E-value=2.7 Score=34.86 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=68.9
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHH--HH
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTAL--ME 139 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l--i~ 139 (557)
.+...+.+...+..++|+.-|..+.+.+--....-.-........+.|+...|...|+++-.....|.+. -...| .-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3444444555566667777777776654211111112233444556677777777777765543223222 11111 12
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 140 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
.+..+|.++......+-+-..+.+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445666666666666555444333344445555556666777777777766653
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=3.3 Score=38.26 Aligned_cols=162 Identities=9% Similarity=0.018 Sum_probs=100.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHhcCCH
Q 008708 214 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRA-G--LQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 214 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~li~~~~~~g~~ 287 (557)
....|++.+|-..++++++. .+.|...++..-. ..|+...-...++.+... + ++.....-..+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888764 2334444443332 246766666677766543 2 221222223444556788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD---ICSYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 364 (557)
++|.+.-++..+.+ +.|...-.++...+...|++.++.++..+-...=-... ...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998887765 55777778888888899999999888765443200001 122223333455668999999999
Q ss_pred HH-HHhCCCCCCHH
Q 008708 365 RR-LKQDGFVPNVI 377 (557)
Q Consensus 365 ~~-m~~~~~~p~~~ 377 (557)
++ |...--+.|..
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 86 33332244543
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.86 E-value=2.3 Score=34.64 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
..++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 455566666666666666666666555 245556666666666543 2333333331 01222233355555555
Q ss_pred CCHHHHHHHHHHh
Q 008708 180 NKFKEAEEVFMTL 192 (557)
Q Consensus 180 g~~~~A~~~~~~~ 192 (557)
+-++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.78 E-value=5.7 Score=36.90 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=69.3
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQ-----KMFHMMIYMYKKAG-GYEKARKLFALMAERGVQQSTVTYNSLMSFET 250 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 250 (557)
.+.|+++.|..++.++..... ...|+. .++...+....+.+ +++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~------------------ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD------------------ 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH------------------
Confidence 456777777777776643211 222332 12223333444555 88888877765543
Q ss_pred CHHHHHHHHHHHH-HCCCCCC-----HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008708 251 NYKEVSKIYDQMQ-RAGLQPD-----VVSYALLINAYGKARREE---EALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 251 ~~~~a~~~~~~~~-~~~~~~~-----~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 321 (557)
+++... .....|+ ..++..++.+|...+..+ +|..+++.+.... +-.+.++..-+..+.+.++
T Consensus 65 -------~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~ 136 (278)
T PF08631_consen 65 -------ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFD 136 (278)
T ss_pred -------HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCC
Confidence 222200 0111222 235566777777777654 4555555554332 2223444444555666777
Q ss_pred HHHHHHHHHHHHhC
Q 008708 322 VDQARTVFKCMRRD 335 (557)
Q Consensus 322 ~~~A~~~~~~~~~~ 335 (557)
.+.+.+++.+|...
T Consensus 137 ~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 137 EEEYEEILMRMIRS 150 (278)
T ss_pred hhHHHHHHHHHHHh
Confidence 77888888877765
No 261
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.59 E-value=1.5 Score=37.38 Aligned_cols=97 Identities=23% Similarity=0.221 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577899999999999999999999988754433 45677888888999999999888877754322222222222111
Q ss_pred -----HHHHcCCHHHHHHHHHHhH
Q 008708 175 -----LFVEANKFKEAEEVFMTLL 193 (557)
Q Consensus 175 -----~~~~~g~~~~A~~~~~~~~ 193 (557)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2345688888888887764
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=5.6 Score=35.17 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 398 (557)
|-..|-.+....++..|...++.--+. .-+-+..+...|+.+|- .|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 333444444555666666666553221 11234455555665553 3555554443
No 263
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.02 E-value=5 Score=36.62 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-GPRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
++..+...++..++..+++.+-+++++..... ++..|...|..+++...+.|+..-..++
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444444555555444444444332 3333444444455554555544444333
No 264
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.81 E-value=12 Score=37.77 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 306 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
..+|..-+.--...|+.+.+.-+|++..-.- ..=...|--.+.-....|+.+-|..++....+-.++..+.+--.-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456666666667777777777777665311 111123333333334447777776666665544323222222111222
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChhHHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 432 (557)
+-..|++..|..+++...+. . |+. ..-..-+....+.|..+.+..
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 33456777777777777654 2 442 222233334456666666663
No 265
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.61 E-value=1.4 Score=40.19 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS-----SGPRPSALTYQII 172 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~l 172 (557)
+..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3345555666666666666666665553 33555666666666666666666666665543 3455554444333
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=8.3 Score=35.27 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=74.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 279 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDME 358 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (557)
......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566777777777777776653 22344556677777777888888777777654321222222222233333333333
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcC
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g 425 (557)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |. -|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence 333333333221 335555556666666677777766655555432 21 12333444444444444
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.51 E-value=13 Score=37.50 Aligned_cols=416 Identities=13% Similarity=0.081 Sum_probs=204.8
Q ss_pred chhcchhHHHHHHHHHhhChHHHHHHH---hhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHH
Q 008708 24 DEAGKKNWRRLMNQIEEVGSAVAVLRS---ERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL 100 (557)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (557)
...+...|+.++....+.+.+ .+++. .....-|.--...-.....-..++..+.+.++|+.-... ++.....|.
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~-~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~ 117 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDV-DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWL 117 (577)
T ss_pred chhcccchHHHHhccCchhHH-HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHH
Confidence 344566777777766555544 33332 112222222222222222234556667777777776644 334555555
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 008708 101 MLITAYG-KQGDFNKAEKVLSFMNKK-GY-APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF- 176 (557)
Q Consensus 101 ~l~~~~~-~~g~~~~A~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~- 176 (557)
.....+. ..|+.+.....|+..... |. --+...|...|..-..++++.....++++.++. + ...|+....-|
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P---~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-P---LHQLNRHFDRFK 193 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-h---hhHhHHHHHHHH
Confidence 5444444 456777777777776653 21 124556777777777778888888888887663 1 12222222221
Q ss_pred --HHc------CCHHHHHHHHHHhHhcc-CCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 008708 177 --VEA------NKFKEAEEVFMTLLDEE-KSPLKPDQKMFHMMIYMY-KKAGGYEKARKLFALMAERGVQQSTVTYNSLM 246 (557)
Q Consensus 177 --~~~------g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 246 (557)
.+. ...+++.++-....... .....+.......-+.-- ...+..+++.....+.... -..+|+
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~----~~~~~~--- 266 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI----HEKVYQ--- 266 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH----HHHHHH---
Confidence 111 12233322222221100 000000111111111000 0001111111111111100 000000
Q ss_pred cccCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008708 247 SFETNYKEVSKIYDQMQRA-------GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 319 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 319 (557)
......+....|+.-.+. -.+++..+|..-+..-.+.|+.+.+.-+|+...-. +..-...|-..+.-....
T Consensus 267 -~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 267 -KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESS 344 (577)
T ss_pred -hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHc
Confidence 000111111222222221 11234567888888888999999999999887532 112233444445555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHH--
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMM-- 396 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~-- 396 (557)
|+.+-|..++....+-..+..+.+--.-....-..|++..|..+++...+.- |+. ..-..-+....+.|+.+.+.
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 8888888877766554333333322222223445689999999999988763 443 33334455566788888877
Q ss_pred -HHHHHHHHCCCCcCHHHHHHH----HH-HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 008708 397 -EIYDKMRVNGIKPNQTIFTTI----MD-AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 397 -~~~~~m~~~~~~p~~~~~~~l----~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 460 (557)
+++...... .-+..+...+ .+ .+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 423 ~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333333322 1222222222 22 233467889999999999884 3556667777777666554
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.32 E-value=2.1 Score=39.14 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NGIKPNQTIFTTI 417 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 417 (557)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455555566666666666666666554 45556666666666666666666666665553 3555555555444
Q ss_pred HHH
Q 008708 418 MDA 420 (557)
Q Consensus 418 ~~~ 420 (557)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.26 E-value=2.4 Score=36.12 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESC---GFPPDQKAKNI 451 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ 451 (557)
..+..++..|++.|+.+.|.+.|.++.+....+. ...+-.+++...-.|++..+...+.++... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567788888888888888888888887644443 345667777778888888888887776542 21112111111
Q ss_pred HH--HHHhhcCCHHHHHHHHHhcC
Q 008708 452 LL--SLAKTADERNEANELLGNFN 473 (557)
Q Consensus 452 l~--~~~~~~g~~~~a~~~~~~~~ 473 (557)
.. -.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 13456788888888776543
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.23 E-value=10 Score=35.51 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
+++.+.+++.|.+.|...+..+|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHH
Confidence 445566777777777776666655433
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.23 E-value=9.7 Score=35.37 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=106.4
Q ss_pred HhcC-CHHHHHHHHHHHHHc--------CCCCCH-----HHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHH
Q 008708 282 GKAR-REEEALAVFEEMLDA--------GVRPTH-----KAYNILLDAFAISGMV---DQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 282 ~~~g-~~~~A~~~~~~~~~~--------~~~~~~-----~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
...+ +++.|..++++..+. ...|+. .++..++.+|...+.. ++|..+++.+.... +..+..+
T Consensus 46 ~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~ 124 (278)
T PF08631_consen 46 LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVF 124 (278)
T ss_pred HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHH
Confidence 3444 888887777765432 122333 3667788888877764 45666666665442 2235556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCcCHH-HHHH-HHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY---AKVNNLEKMMEIYDKMRVNGIKPNQT-IFTT-IMD 419 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-l~~ 419 (557)
..-+..+.+.++.+.+.+.+.+|...- .-....+...+..+ ... ....|...+..+....+.|... .... ++.
T Consensus 125 ~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~ 202 (278)
T PF08631_consen 125 LLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLT 202 (278)
T ss_pred HHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 666777777999999999999999862 22334444444444 333 3456777777766544555553 2111 111
Q ss_pred ---HHHhcCC------hhHHHHHHHHHHh-CCCCCCHHH---HHHHH----HHHhhcCCHHHHHHHHHhc
Q 008708 420 ---AYGKNKD------FDSAVVWYKEMES-CGFPPDQKA---KNILL----SLAKTADERNEANELLGNF 472 (557)
Q Consensus 420 ---~~~~~g~------~~~A~~~~~~m~~-~~~~p~~~~---~~~l~----~~~~~~g~~~~a~~~~~~~ 472 (557)
...+.++ .+....++....+ .+.+.+..+ ..+++ ..+.+.+++++|.+.++-.
T Consensus 203 ~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 203 RVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1223222 3333344443322 222334333 33333 3567899999999998753
No 272
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.19 E-value=1.9 Score=37.00 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=61.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 142 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221 (557)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 221 (557)
.+.|+ +.|++.|-.+...+.--++.....|.. |-...+.+++++++..+++....+-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34454 678888888887765555555555554 4457889999999999988655555788999999999999999998
Q ss_pred HHH
Q 008708 222 KAR 224 (557)
Q Consensus 222 ~A~ 224 (557)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.16 E-value=13 Score=36.72 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
..+..++-+.|+.++|++.|++|.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556667777777777776654211 2334555666777777777777777666543
No 274
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.15 E-value=12 Score=36.31 Aligned_cols=144 Identities=12% Similarity=0.236 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY-GTLIKG 385 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~ 385 (557)
+|...++...+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+..-|..+|+--... -||...| +-.+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 45566666667777899999999999888 5678888888888665 57888999999875554 3444443 455667
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+...++-+.|..+|+...+. +..+ ..+|..+|.--..-|+...+..+-+.|.+ +-|...+...+.+-|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 77889999999999976643 2333 57899999988899999999999999987 5677777766666554
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.04 E-value=0.41 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~ 401 (557)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=5.8 Score=41.50 Aligned_cols=175 Identities=14% Similarity=0.208 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
.-+..+.+...+.-|..+-+.- +..++. .+....++.+.+.|++++|...|-+.... +.|.. .....+.
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-Vi~kfLd- 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-VIKKFLD- 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-HHHHhcC-
Confidence 3444555555556565554433 111221 22333444555666666666666544322 11111 1000100
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
..+..+...+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 12234444556666666654 44555677777777777777666655433 2211 00123344445555555555544
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
-.+... +......+ +-..+++++|++++..
T Consensus 486 A~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 433321 22222222 2344556666665554
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.95 E-value=0.44 Score=28.01 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
+++.|...|.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.94 E-value=6.5 Score=32.76 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=59.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHHcCCH
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHK-AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC-SYTTM--LSAYVNASDM 357 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 357 (557)
.+.++.++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -..-| ...+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566666777776666655432222 11222333455666666666666665543333222 11111 1123445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
+......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555444333222223334455555556666666666655543
No 279
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.61 E-value=3.7 Score=39.85 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=93.6
Q ss_pred HHHcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 351 YVNASDMEGAEKFFRR-LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
-...|+...|-+-+.. +....-.|+.... ....+...|.++.+...+...... +.....+..++++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 3445666666544443 3333224444433 344567789999999888776543 34567788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccceee
Q 008708 430 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSIS 487 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 487 (557)
|..+-..|+...+ .++.............|-++++...++++...+++....+.+.+
T Consensus 376 a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 376 ALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 9999998887543 35566666666677788999999999998888887777776665
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.52 E-value=12 Score=34.98 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
++.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 444455555555544444444433
No 281
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.00 E-value=0.61 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555544
No 282
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.80 E-value=13 Score=34.05 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=71.8
Q ss_pred HHHHhcccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008708 242 YNSLMSFETNYKEVSKIYDQMQR-AGLQPDVVSYALLINAYGK-AR-REEEALAVFEEMLD-AGVRPTHKAYNILLDAFA 317 (557)
Q Consensus 242 ~~~ll~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 317 (557)
|..++....-.-+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++
T Consensus 134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~ 213 (292)
T PF13929_consen 134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILA 213 (292)
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHH
Confidence 44444444444455555552211 1233355556666655544 22 22222333333332 234567777777888888
Q ss_pred HcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
+.+++.+-.++++..... +...|...|..+|......|+..-..++..+
T Consensus 214 ~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 214 ESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888888888776654 4556777788888888888887665555553
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.95 E-value=0.77 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|..+..++...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444455555555555555555544
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.88 E-value=14 Score=33.09 Aligned_cols=174 Identities=18% Similarity=0.089 Sum_probs=87.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 008708 280 AYGKARREEEALAVFEEMLDAGV--RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN---- 353 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 353 (557)
.-.+.|++++|.+.|+.+..... +-...+...++.++.+.++++.|+..+++....-......-|-.-|.+++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 34567777777777777765421 112334555666677777777777777776654222222223333333321
Q ss_pred ---cCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 354 ---ASDMEG---AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 354 ---~g~~~~---A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
..+... |..-|+.++.. -||.. -...|..-...+... =...=..+.+-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 122222 23333333332 12211 111111111111100 001112345567788888
Q ss_pred hHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 428 DSAVVWYKEMESCGFPPDQ---KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 428 ~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
-.|..-+++|++. .+-+. ..+..+..+|...|-.++|...-+-+.
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 8888888888774 23222 345556677888888888777766554
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.66 E-value=0.48 Score=27.45 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhcCChhHH
Q 008708 411 QTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 411 ~~~~~~l~~~~~~~g~~~~A 430 (557)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444443
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.62 E-value=28 Score=36.10 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINA-----YGKARREEEALAVFEEMLD-------AGVRPTHKAYNILLDAFAISG 320 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g 320 (557)
..+...++...+.| +...-..+..+ +....+.+.|+.+|+.+.+ .| .+.....+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 45555566555554 22222222222 3455677788887777755 33 2234455556665532
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCH
Q 008708 321 -----MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA--KVNNL 392 (557)
Q Consensus 321 -----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~ 392 (557)
+.+.|..++.+.-..| .|+...+-..+.-... ..+...|.++|......| .+....+.+++.... -..+.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCH
Confidence 5667888887777665 2333322222211111 245678888888887776 223222222222111 12367
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
..|..++.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+.|.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 78888888888776 3332222233334444 677777766666666553
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.33 E-value=0.48 Score=27.43 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhcCCHHHH
Q 008708 446 QKAKNILLSLAKTADERNEA 465 (557)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a 465 (557)
...|..+..++...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34445555555555555544
No 288
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.21 E-value=15 Score=32.30 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 166 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
...+......+...+.+..+...+...... .........+......+...+.+..+...+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444555555555555555555555320 01123333444444455555555555555554443
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.92 E-value=7.2 Score=39.21 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
...+.+++.+-++|-.++|+++- +|...-=.+.-..|+++.|.++..+. -+..-|..|..+..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQRFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhhhhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhc
Confidence 34566777777778777777643 22222112222234444444433332 1344566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 285 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 285 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (557)
+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|....+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 666666666655432 23344445555554444333333333331 122233445556666665555
Q ss_pred H
Q 008708 365 R 365 (557)
Q Consensus 365 ~ 365 (557)
.
T Consensus 745 i 745 (794)
T KOG0276|consen 745 I 745 (794)
T ss_pred H
Confidence 4
No 290
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.79 E-value=2.3 Score=35.67 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 394 KMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKD-----------FDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+|+.-|++.+. +.|+ ..++.++..+|...+. +++|...|+++.. ..|+...|+.-+..+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 33444444443 4555 4666667666654332 5556666666666 5788888888777764
No 291
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.78 E-value=4.8 Score=34.36 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=72.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHH
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDA 420 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 420 (557)
=..-+.+.|++++|..-|.+.+..- ++. ...|..-..++.+.+.++.|+.-..+.++.+ |+ ......-..+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHH
Confidence 3556788999999999999998863 332 2346666778889999999999999988754 43 3334444568
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
|.+..++++|+.-|+++++ ..|...
T Consensus 178 yek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHH--hCcchH
Confidence 8899999999999999988 455544
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=36 Score=36.06 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
...+.+.+.|++++|...|-+-... +.|+ .+|.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.+
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk 445 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK 445 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc
Confidence 3445555678888887777554432 1222 2444555666667777777777777665 4445567777888888
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
+.++-.++.+..- .|.. ..-....+..+.+.+-.++|..+-.+... .......++...+++++|.+.+.
T Consensus 446 d~~kL~efI~~~~----~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 446 DVEKLTEFISKCD----KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred chHHHHHHHhcCC----Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHh
Confidence 8777666655441 1110 11133455566666666666655443332 34455556666667777766655
Q ss_pred HH
Q 008708 261 QM 262 (557)
Q Consensus 261 ~~ 262 (557)
.+
T Consensus 515 sl 516 (933)
T KOG2114|consen 515 SL 516 (933)
T ss_pred cC
Confidence 43
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.64 E-value=8.3 Score=35.47 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
++++++.++..=++-|+-||..+++.+++.+.+.+++..|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344445444444445555555555555555555555555554444443
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.48 E-value=45 Score=36.94 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=38.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVIT--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 425 (557)
+.+|..+|++.+|+.+..++... -+... -..|+.-+...+++-+|-++..+.... ....+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44555555555555555544321 11111 134555555666666666655554421 122333455555
Q ss_pred ChhHHHHHHHHH
Q 008708 426 DFDSAVVWYKEM 437 (557)
Q Consensus 426 ~~~~A~~~~~~m 437 (557)
.|++|.++....
T Consensus 1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.41 E-value=1.4 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666554
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.40 E-value=6.3 Score=33.70 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=71.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
+-+.+.|++++|..-|...+..-.+.. .+.|..-..++.+.+.++.|++--...++.+ +........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 457889999999999999987642222 2345556668889999999999998888875 44445555567789999
Q ss_pred CCHHHHHHHHHHHHHC
Q 008708 390 NNLEKMMEIYDKMRVN 405 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~ 405 (557)
..++.|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999999986
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.18 E-value=14 Score=30.90 Aligned_cols=132 Identities=9% Similarity=0.137 Sum_probs=75.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
+.++.+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+. +.+..+.++--.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3445555667778888888888888888876554443 34445556555544443322 2333344443344321
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
=...+..+++.+...|++-+|+++.+..... +......++.+....++...-..+++-+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0114566777788888888888888775321 1122244666666666665555555443
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.64 E-value=4 Score=37.88 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=25.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
+-|.+.|.+++|+..|....... +.+++++..-..+|.+...+..|+.=-...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455555555555555444321 2245555555555555555554444444433
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.63 E-value=28 Score=33.56 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
...+|..++..+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45578888888999999999999888887643111 333444445566677888888888887776
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.33 E-value=52 Score=36.44 Aligned_cols=143 Identities=22% Similarity=0.250 Sum_probs=63.2
Q ss_pred hHHHHHHHhhhcCC-CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCC------HhhHHHHHHHHHhc-CChhH
Q 008708 43 SAVAVLRSERTRGQ-PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN------EMDFLMLITAYGKQ-GDFNK 114 (557)
Q Consensus 43 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-g~~~~ 114 (557)
+|.-+++..+.... ..|...++..+..+....++..| |.+++++. ..+| +..|..-+.++.+. ++.+-
T Consensus 659 ka~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~A---F~~~RkhR-idlnii~d~~~~~Fl~nv~afl~~in~~~~ 734 (1265)
T KOG1920|consen 659 KAAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKEA---FEVMRKHR-IDLNIIFDYDPKRFLKNVPAFLKQINRVNH 734 (1265)
T ss_pred hhhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHHH---HHHHHHhc-cCccchhhcCHHHHHhhHHHHhccCCcHHH
Confidence 35556663322222 34566677777766666666554 45555543 2232 33444444444433 34444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHH
Q 008708 115 AEKVLSFMNKKGYAPSVVSHTA----LMEAYGRGG----RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKE 184 (557)
Q Consensus 115 A~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~ 184 (557)
-..++-.+...++ +...|.. -...|.... +.....+........ ..|+ .-...++.+|.+.+ .++.
T Consensus 735 l~lfl~~lk~eDv--tk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~ 810 (1265)
T KOG1920|consen 735 LELFLTELKEEDV--TKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEE 810 (1265)
T ss_pred HHHHHhhcccchh--hhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHH
Confidence 4444444432211 1111111 101121111 223333333333332 2344 33445667777776 6666
Q ss_pred HHHHHHHhH
Q 008708 185 AEEVFMTLL 193 (557)
Q Consensus 185 A~~~~~~~~ 193 (557)
|++......
T Consensus 811 aL~kI~~l~ 819 (1265)
T KOG1920|consen 811 ALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHH
Confidence 666666554
No 301
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.27 E-value=5.6 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 400 DKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 400 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+.+...++.|++.+..+.+++|.+.+++..|.++++-..
T Consensus 31 N~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 31 NNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333444444444555555555555555555444443
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.26 E-value=29 Score=33.41 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
....+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578888999999999999999999888643221 344455556677788999999999988776
No 303
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.08 E-value=4.9 Score=34.83 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=30.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 008708 136 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 192 (557)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 192 (557)
..++.+.+.++..+++.+.++-++.++. |..+-..+++.++-.|++++|..-++-+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444555555666666655555554332 4445555556666666666665544444
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.17 E-value=1.6 Score=26.37 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=7.1
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 008708 172 ILKLFVEANKFKEAEEVFMT 191 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~ 191 (557)
+...|...|++++|+.++++
T Consensus 8 la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 8 LANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhhhhcchhhHHHHH
Confidence 33333333333333333333
No 305
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.01 E-value=23 Score=30.94 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSK 257 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~ 257 (557)
|-+.-|.--|.+.+.. .|.-+.+||.|.-.+...|+++.|.+.|+...+....-+-...|.-+.. .|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhc----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 3334444444444421 1333567888888888899999999999988887555454555554443 377777776
Q ss_pred HHHHHHHCC
Q 008708 258 IYDQMQRAG 266 (557)
Q Consensus 258 ~~~~~~~~~ 266 (557)
=+-+.-+..
T Consensus 155 d~~~fYQ~D 163 (297)
T COG4785 155 DLLAFYQDD 163 (297)
T ss_pred HHHHHHhcC
Confidence 666655543
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.98 E-value=2.3 Score=25.60 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 204 QKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35789999999999999999999988765
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.93 E-value=8.2 Score=28.59 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
.-++.+-++.+....+.|++....+-+.+|.+..++..|.++|+-.+.+ +..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3345555566666667777777777777777777777777777766632 1223445554443
No 308
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.91 E-value=22 Score=32.88 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG---YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQ 170 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 170 (557)
....+...++..-....+++.+...+-++...- ..|+.. -...++.+. .-++++++.++..=+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 444555667777777788888888887776531 111111 112222222 335778888888888888889999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
.+++.+.+.+++..|.++...++.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999888888877765
No 309
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.70 E-value=25 Score=31.12 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH---HHH-HHH--hcCChhHHHHHHHHHHhCCCCCCH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT---IMD-AYG--KNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~-~~~--~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
...-...+++.+|+++|++.....+..+..-|.. ++. ++| -..+.-.+...+++..+ ..|+.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~F 228 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCcc
Confidence 3334456677777777777765544333333321 111 112 22444445555555554 45555
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.57 E-value=49 Score=34.37 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH----HhcCCh
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV----NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY----GKNKDF 427 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g~~ 427 (557)
+...+...+.+....| +......|.+.|..- .+++.|...|......+ ...+| .+...+ .... +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-h
Confidence 4556666666655544 444455555555443 24666777776666543 22222 222222 2233 6
Q ss_pred hHHHHHHHHHHhC
Q 008708 428 DSAVVWYKEMESC 440 (557)
Q Consensus 428 ~~A~~~~~~m~~~ 440 (557)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777653
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.48 E-value=1.9 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNK 124 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 124 (557)
+..+..+|.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 312
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.74 E-value=9.8 Score=28.54 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..+-++.+...++.|.+.+..+.+.+|.|.+++..|.++++-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555566677777777777777777777777777776654
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.22 E-value=18 Score=31.22 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=60.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS---GPRPSALTYQIILKLFVEANKFKEA 185 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~A 185 (557)
+-.-+.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344778888888888776667777777777776 66789999999887664 3367899999999999999999877
Q ss_pred H
Q 008708 186 E 186 (557)
Q Consensus 186 ~ 186 (557)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.89 E-value=23 Score=29.31 Aligned_cols=67 Identities=18% Similarity=0.067 Sum_probs=34.6
Q ss_pred hccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 72 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG 142 (557)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 142 (557)
..++.+.+..+++.+.-..+- .+..-..-...+.++|++.+|..+|+.+.... |....-..|+..|.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~--~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE--FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 334556666666666655432 12222233444556777777777777766552 33333334443333
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.88 E-value=16 Score=27.45 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+..+-++.+....+.|++.+..+.+.+|.+..++..|.++|+-.+.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666677788888888888888888888888888777643 1222225655544
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.91 E-value=9.9 Score=35.40 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
.+-|.+.|++++|+..|...+.. .| +++++..-..+|.+...+..|..=........ ..-.-.|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45699999999999999988764 45 88899888999999999887776655554321 0011223333333333455
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 008708 357 MEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~ 375 (557)
..+|.+=++..+.. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 55555555555543 455
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.89 E-value=2.2 Score=24.34 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444555555555555554443
No 318
>PRK09687 putative lyase; Provisional
Probab=82.81 E-value=41 Score=31.27 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
++..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 355555566666666665 3455555555542 34444444455555442 23355555555553 3466666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+.++.+.|+ ..+...+-+..+.+ + .....+.+++..|.. +|...+..+.+. .||..+......+|.
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777777776 45555555555432 2 234566777777774 677777777652 456666655555554
No 319
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.78 E-value=47 Score=34.75 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCC-CCC----C-HhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CC
Q 008708 57 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSW-WDF----N-EMDFLMLITAYGKQGDFNKAEKVLSFMNKKG--YA 128 (557)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~ 128 (557)
....+.+...+..++...+++...++.+-+.+... ++. + .+.|...++---+-|+-++|+.+.-.+.+.. +.
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 34455566666666666677776776666665431 000 0 1122233333334466666666655555442 33
Q ss_pred CCHHHHH-----H--HHHHHHhcCChHHHHHHHHHHHh
Q 008708 129 PSVVSHT-----A--LMEAYGRGGRYKNAEAIFRRMQS 159 (557)
Q Consensus 129 ~~~~~~~-----~--li~~~~~~g~~~~A~~~~~~m~~ 159 (557)
||..+.. - +-+.|-..+..+.|.++|++.-+
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 4432211 1 11223334455666666666544
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.41 E-value=70 Score=33.72 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-------YKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~ 167 (557)
..-.+|-.|.|+|.+++|.++....... .......+-..+..|....+ -+....-|++..+.....|++
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3447888899999999999998554432 23344566677777766422 235555666665544433554
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.54 E-value=23 Score=35.83 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=49.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544332 444566666666666666666666554432 223444455555554444
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
.+-....+.| +. |...-+|...|+++++.+++..
T Consensus 713 ~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHh
Confidence 4444444433 11 2222344556666666555543
No 322
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=80.09 E-value=40 Score=29.48 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
+.++|.+.--+...|+++.|.+.|+...+..+.-+-...+.-| ++.-.|++.-|.+-+.+..+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHh
Confidence 4556666666666666666666666665554432222222222 22234566666555555543
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.09 E-value=1 Score=36.90 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=63.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 456667778888888888888876655678888899999999888788887776221 1233457778888899
Q ss_pred HHHHHHHHHhcCC
Q 008708 462 RNEANELLGNFNH 474 (557)
Q Consensus 462 ~~~a~~~~~~~~~ 474 (557)
+++|.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 9999988887653
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.05 E-value=15 Score=32.00 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG--FVPNVITYGTLIK 384 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~ 384 (557)
+..++.+.+.+.+.+++...++-.+.+ +.+..+-..++..++-.|++++|..-++-.-... ..+-..+|..++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344555666666777776666555442 3355555666667777777777766655443321 1233344554444
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.83 E-value=0.77 Score=37.62 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFR 155 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 155 (557)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 455555566666666666666654434456666666666666655555555544
No 326
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.63 E-value=25 Score=26.74 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=52.3
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
........++|-.|.+|+...+. ....+--.-+..+.++|++++|. ..- .....||...|-.|-. .+.|-.+
T Consensus 15 ~atG~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~AL--l~~--~~~~~pdL~p~~AL~a--~klGL~~ 86 (116)
T PF09477_consen 15 MATGHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEAL--LLP--QCHCYPDLEPWAALCA--WKLGLAS 86 (116)
T ss_dssp HHHTTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHH--HHH--TTS--GGGHHHHHHHH--HHCT-HH
T ss_pred HHhhhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHH--Hhc--ccCCCccHHHHHHHHH--HhhccHH
Confidence 34455678889999999998873 23333445566777889999982 222 1223577777766544 4778888
Q ss_pred HHHHHHHHHHhCC
Q 008708 149 NAEAIFRRMQSSG 161 (557)
Q Consensus 149 ~A~~~~~~m~~~~ 161 (557)
++...+.++...|
T Consensus 87 ~~e~~l~rla~~g 99 (116)
T PF09477_consen 87 ALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHHCT-S
T ss_pred HHHHHHHHHHhCC
Confidence 8888888776554
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.94 E-value=6.8 Score=22.16 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777778888888888888877765
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.81 E-value=23 Score=29.98 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN-----------LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
++|+.-|++.+..+ |-...++..+..+|...+. +++|.+.|++... ..|+..+|+.-+....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH----
Confidence 34444445444432 2334666677777665432 5556666666665 4788889988877753
Q ss_pred hhHHHHHHHHHHhCCC
Q 008708 427 FDSAVVWYKEMESCGF 442 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~ 442 (557)
+|-.+..++.+.+.
T Consensus 125 --kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 --KAPELHMEIHKQGL 138 (186)
T ss_dssp --THHHHHHHHHHSSS
T ss_pred --hhHHHHHHHHHHHh
Confidence 36666667666543
No 329
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.16 E-value=3.4 Score=22.04 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 008708 100 LMLITAYGKQGDFNKAEKVLS 120 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~ 120 (557)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555555555555543
No 330
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.96 E-value=57 Score=29.51 Aligned_cols=87 Identities=7% Similarity=0.098 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHH
Q 008708 275 ALLINAYGKARREEEALAVFEEMLDAGV----RPT-------HKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDIC 342 (557)
Q Consensus 275 ~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ 342 (557)
.-|...|...+.+.+..++++++...-- ..| ...|..-|.+|....+-.+-..++++...- ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566777777888887777777754311 111 235666677777777777777777766543 2234443
Q ss_pred HHHHHHH-----HHHHcCCHHHHHH
Q 008708 343 SYTTMLS-----AYVNASDMEGAEK 362 (557)
Q Consensus 343 ~~~~li~-----~~~~~g~~~~A~~ 362 (557)
... +|+ ...+.|++++|-.
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHh
Confidence 332 233 3345677777653
No 331
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.86 E-value=45 Score=27.70 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=33.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVI-TYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
-.+.++.+.+..++..+.-. .|... .-..-...+...|++.+|..+|+.+.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34566777777777777654 33322 2222344566778888888888887654
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.39 E-value=4.2 Score=22.78 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=13.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKK 125 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~ 125 (557)
.+..++.+.|++++|.+.|+++...
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 333
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=75.07 E-value=49 Score=27.79 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=17.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEE 289 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (557)
.++.+.+.+++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34444445555666666666666666665443
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.02 E-value=47 Score=30.32 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=55.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH
Q 008708 136 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK 215 (557)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (557)
.=|.+++..|++.+++...-+--..--+..+.....-|-.|.+.+.+..+.++-..=+....+. +..-|.+++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq---~lp~y~~vaELyL 164 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQ---SLPEYGTVAELYL 164 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC---CchhhHHHHHHHH
Confidence 3467888888888887765554332122234455556667888888888888776666432222 2223666555544
Q ss_pred H-----cCCHHHHHHHH
Q 008708 216 K-----AGGYEKARKLF 227 (557)
Q Consensus 216 ~-----~g~~~~A~~~~ 227 (557)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 58888888776
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=64 Score=28.78 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHhcCChhHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI-FTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~ 431 (557)
...++.|+..|.+.+.. .|+. .-|+.-+-++.+..+++.+..--.+.++ +.||... .--+..++.....+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 34555566655555443 3444 3344555556666666666666555554 2444332 223334455566666666
Q ss_pred HHHHHHHh----CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 008708 432 VWYKEMES----CGFPPDQKAKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 432 ~~~~~m~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
..+.+..+ ..+++-..+...|..+=...=+..+..++.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 66666532 3334444555555555444434444444443
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.20 E-value=22 Score=27.87 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+-+..+...++.|++......+++|.+.+++..|.++|+-...
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444455666666666666666666666666666665544
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.62 E-value=6.5 Score=21.93 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=8.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~ 403 (557)
..++.+.|++++|.+.|++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 333444444444444444443
No 338
>PRK09687 putative lyase; Provisional
Probab=73.18 E-value=80 Score=29.35 Aligned_cols=77 Identities=9% Similarity=0.028 Sum_probs=35.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY----KNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
..+....+..+...|. +++...+..+... ++...-...+.+++..|.. .++...+..+... .++...-..
T Consensus 37 ~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 37 SLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred HHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3444445555555553 3333333333332 3555555556666666642 3455555554322 234444444
Q ss_pred HHHHHHH
Q 008708 172 ILKLFVE 178 (557)
Q Consensus 172 ll~~~~~ 178 (557)
.+.++..
T Consensus 111 A~~aLG~ 117 (280)
T PRK09687 111 AINATGH 117 (280)
T ss_pred HHHHHhc
Confidence 4444433
No 339
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.40 E-value=63 Score=27.84 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=41.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNV--ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
.+...+++++|+.-++.........+. .+--.|.......|.+++|+..++.....+. .......-.+++...|+-
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCch
Confidence 444555555555555544432100000 1111234444555666666665555543321 222233344555666666
Q ss_pred hHHHHHHHHHHhC
Q 008708 428 DSAVVWYKEMESC 440 (557)
Q Consensus 428 ~~A~~~~~~m~~~ 440 (557)
++|..-|++.+..
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666666554
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.37 E-value=8.6 Score=23.83 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 008708 417 IMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 417 l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..+|...|+.+.|..++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 341
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.96 E-value=71 Score=29.26 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 008708 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV---- 352 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 352 (557)
=|.+++..++|.+++.+.-+--+.--+..+.+...-|-.|.+.+....+.++-..-.+..-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3677888888888877765554322223344555556668888888888777776665433334445666666554
Q ss_pred -HcCCHHHHHHHH
Q 008708 353 -NASDMEGAEKFF 364 (557)
Q Consensus 353 -~~g~~~~A~~~~ 364 (557)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 358888888877
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.64 E-value=9.1 Score=23.73 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKG 126 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g 126 (557)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777776543
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.16 E-value=1.4e+02 Score=31.45 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=74.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRC-SPD-------ICSYTTMLSAYVNASDMEGAEKFFR--------RLKQDGFVPNVITYG 380 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~ 380 (557)
+-.+++..|...++.+..... .|+ +..+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889999999998875421 111 2222333334456799999999998 444444344444443
Q ss_pred H--HHHHHHHcCC--HHH--HHHHHHHHHHC-CCCc--CHHHHHHH-HHHHHhcC--ChhHHHHHHHHHHh-C-CCCCCH
Q 008708 381 T--LIKGYAKVNN--LEK--MMEIYDKMRVN-GIKP--NQTIFTTI-MDAYGKNK--DFDSAVVWYKEMES-C-GFPPDQ 446 (557)
Q Consensus 381 ~--l~~~~~~~g~--~~~--a~~~~~~m~~~-~~~p--~~~~~~~l-~~~~~~~g--~~~~A~~~~~~m~~-~-~~~p~~ 446 (557)
. ++..+...+. ..+ +.++++.+... .-.| +..++..+ +.++...- ...++...+.+..+ . .-..+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 3 2222222222 223 66666665431 1122 23344443 33333221 22355555544432 1 111222
Q ss_pred H----HHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 447 K----AKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 447 ~----~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
. +++.+...+. .|+..+.......
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~ 559 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSAR 559 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 2 2222222333 6788876666655
No 344
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.28 E-value=16 Score=25.95 Aligned_cols=47 Identities=6% Similarity=0.009 Sum_probs=23.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQ--KAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
...+.++|+..++..++.-..|.. .++..++.++...|+++++..+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666665553222211 34455555666666666655443
No 345
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=69.56 E-value=82 Score=28.04 Aligned_cols=35 Identities=14% Similarity=0.379 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 008708 374 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 409 (557)
Q Consensus 374 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 409 (557)
|.+.....++..|. .+++++|.+++.++-+.|+.|
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 34444444443332 244455555555544444433
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.23 E-value=46 Score=25.01 Aligned_cols=53 Identities=6% Similarity=0.125 Sum_probs=28.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
+..+...|+|++|..+.+.+ ..||...|-.+-. .+.|-.+.+..-+..|-..|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34455566666666655544 3556655554432 35555555555555555544
No 347
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=69.09 E-value=69 Score=28.33 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=49.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 008708 91 WWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP---SVVSHT--ALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 165 (557)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 165 (557)
.+.+....++.|+--|.-...+.+|.+.|.. ..|+.| +...++ .-|......|+.++|++....+...-...|
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 3445556666666656555556666666643 333333 333332 345556677777777777666532222223
Q ss_pred HHHHHHHHH----HHHHcCCHHHHHHHHHHh
Q 008708 166 ALTYQIILK----LFVEANKFKEAEEVFMTL 192 (557)
Q Consensus 166 ~~~~~~ll~----~~~~~g~~~~A~~~~~~~ 192 (557)
...+-.+.. -+.+.|..++|++..+.-
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 322222221 134445555555554443
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.94 E-value=17 Score=25.90 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=26.2
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
...+.++|+..|...++.-..|. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665422211 23556666666677776666554
No 349
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.88 E-value=1.3e+02 Score=30.03 Aligned_cols=106 Identities=9% Similarity=0.035 Sum_probs=58.4
Q ss_pred HHHHcCCHHHHHHHHHHHHh---CCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------CCCCCC----
Q 008708 315 AFAISGMVDQARTVFKCMRR---DRCSPD-----ICSYTTMLSAYVNASDMEGAEKFFRRLKQ-------DGFVPN---- 375 (557)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~---- 375 (557)
.+.-.|++.+|.+++...-- .|...+ -..||.+...+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556777777777654321 121111 12245666666666777766666666553 233321
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 376 -------VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 376 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
..+|| ..-.|...|++-.|.+.|.+.... +..++..|-.+..+|.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 12233 344556667777777777766643 3456667777766664
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.77 E-value=47 Score=24.95 Aligned_cols=91 Identities=21% Similarity=0.272 Sum_probs=61.3
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
.......++|--|-+|+...+. ....+--.-+..+...|++++|..+.+.+. .||...|-.|-.. +.|..++
T Consensus 15 gTG~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~ 86 (115)
T TIGR02508 15 GTGHHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSA 86 (115)
T ss_pred HccchHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHH
Confidence 3445577889999999987752 123333344566778899999998887663 5888888777554 6677777
Q ss_pred HHHHHHHHHhCCCCCCHHHH
Q 008708 150 AEAIFRRMQSSGPRPSALTY 169 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~ 169 (557)
+..-+.+|...|. |....|
T Consensus 87 l~~rl~rla~sg~-p~lq~F 105 (115)
T TIGR02508 87 LESRLNRLAASGD-PRLQTF 105 (115)
T ss_pred HHHHHHHHHhCCC-HHHHHH
Confidence 7777777766653 333333
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.73 E-value=1.3e+02 Score=30.15 Aligned_cols=181 Identities=13% Similarity=0.198 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 348 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 348 (557)
.|.....+++..+....++.-...+..+|+..| -+...|..++.+|... ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355666778888888888888888888888764 4667888888888887 557777888888776432 444444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHH
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVP--N---VITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~ 422 (557)
..|-+ ++...+..+|.++...-++- + ...|.-|...- ..+.+....+..++.+. |..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55554 78888888888776542220 1 12344443321 24566666666666642 43444556666667788
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
...++++|++++...++.+ .-|...-..++..++
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 8889999999998887754 444444455555443
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.18 E-value=66 Score=26.35 Aligned_cols=51 Identities=12% Similarity=-0.023 Sum_probs=26.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK 125 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 125 (557)
..+...+..+++.+.-..+-.+... ..-.-.+...|++.+|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d--~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELD--MFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccc--hhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4455555555555554442212222 22334455667777777777776665
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.05 E-value=1.8e+02 Score=31.43 Aligned_cols=279 Identities=15% Similarity=0.111 Sum_probs=153.7
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh----CC----------CCCCHHHHH----HHHH
Q 008708 78 VVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNK----KG----------YAPSVVSHT----ALME 139 (557)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g----------~~~~~~~~~----~li~ 139 (557)
..+...+|....+- -.--|....+.|+++.|..++++... .+ --|+....+ .+..
T Consensus 349 lH~~Aa~w~~~~g~-------~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~ 421 (894)
T COG2909 349 LHRAAAEWFAEHGL-------PSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQ 421 (894)
T ss_pred HHHHHHHHHHhCCC-------hHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHH
Confidence 34555666666652 13456666778999999888876511 11 012222211 1222
Q ss_pred H--HHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHHcCCHHHHHHHHHHhHhc-cCCCCCCCHHHHH
Q 008708 140 A--YGRGGRYKNAEAIFRRMQSSGPRPSAL-------TYQIIL-KLFVEANKFKEAEEVFMTLLDE-EKSPLKPDQKMFH 208 (557)
Q Consensus 140 ~--~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~ll-~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 208 (557)
+ .....++.+|..+..++...-..|+.. .++.+- ......|+++.|+++.+..+.. ......+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 2 345688999999988876543332211 222222 2344578999999998887753 1222345567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc--------ccC--CHHHHHHHHHHHHHCC---CC---CCHH
Q 008708 209 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS--------FET--NYKEVSKIYDQMQRAG---LQ---PDVV 272 (557)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--------~~~--~~~~a~~~~~~~~~~~---~~---~~~~ 272 (557)
.+..+..-.|++++|..+..+..+..-.-+...+..... ..| .+.+....|....... .+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 888899999999999999888776533344444433222 234 2344444444433221 11 1223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEM----LDAGVRPTHKA--YNILLDAFAISGMVDQARTVFKCMRRDRCSP----DIC 342 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 342 (557)
++..+..++.+ .+.+..-...- ......|-... +..|+..+...|+.++|...+.++......+ +..
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 44455555554 33333322222 22211222222 2367778889999999999999887643222 222
Q ss_pred HHHHHHH--HHHHcCCHHHHHHHHHH
Q 008708 343 SYTTMLS--AYVNASDMEGAEKFFRR 366 (557)
Q Consensus 343 ~~~~li~--~~~~~g~~~~A~~~~~~ 366 (557)
+-...+. .....|+.+.+.....+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222 23456788777776665
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.90 E-value=1e+02 Score=28.36 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHH
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEM----ESCGFPPDQKAKNILL-SLAKTADERNEANELL 469 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~ 469 (557)
..++.++.+.|++.+|+.++..+ .+.+-.|+..+...+- .+|....+...+..-+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHH
Confidence 45777888999999998876554 3344455544433332 3455555555444433
No 355
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.85 E-value=62 Score=28.61 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChh-------HHHHHHHHHHhCCCCC----CH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 413 IFTTIMDAYGKNKDFD-------SAVVWYKEMESCGFPP----DQ-KAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~-------~A~~~~~~m~~~~~~p----~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
.+-.+.+.|...|+.+ .|...|.+..+..-.| +. .....++....+.|+.++|.+.+.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4444555555555533 3444444444321111 12 23334445667777777777777776533
No 356
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.55 E-value=11 Score=20.01 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
|..+...+...|+++.|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444555555555554444
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.50 E-value=92 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 209 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 241 (557)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 241 (557)
-+...-+..+++.+|+++|+++....+..+..-
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 344455566788888888888776544444333
No 358
>PRK10941 hypothetical protein; Provisional
Probab=67.39 E-value=99 Score=28.49 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 008708 134 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 213 (557)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (557)
.+.+-.+|.+.++++.|+.+.+.+....+. ++.-+.--.-.|.+.|.+..|..=++..++. .+-.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 455566777778888888888877776443 5555666666677788888887777777653 2334444444444443
No 359
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.34 E-value=34 Score=25.41 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=31.2
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPD-----QKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.+.|++..|.+.+.+..+.......+. ....-.+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666666555555544322222222 12233355566777888888888877654
No 360
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.38 E-value=1.8e+02 Score=30.84 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=21.0
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
.+.++++.+...+..|.... .-...-..-+.+++...|+.++|...++.+
T Consensus 323 l~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555554443211 112222223334444455555555555444
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.64 E-value=39 Score=34.26 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=55.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (557)
...|+...|...+............+..-.|.+...+.|....|-.++.+.+.-. ...+.++..+.+++.-..+.++|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3456666666666655432211122233445555556666666666666655443 334556666666777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
+.|+...+.. +.+...-+.|..
T Consensus 697 ~~~~~a~~~~-~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLT-TKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcC-CCChhhHHHHHH
Confidence 7777666553 334444444433
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.31 E-value=1.2e+02 Score=28.15 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
.....|..+|.+.+|.++.++.+..+ +.+...|-.++..+...|+--.|.+-++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33444555555555555555555432 334444445555555555544444444444
No 363
>PRK10941 hypothetical protein; Provisional
Probab=65.22 E-value=93 Score=28.66 Aligned_cols=76 Identities=9% Similarity=-0.045 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIILKL 175 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~ 175 (557)
.+.|-.+|.+.++++.|+.+.+.+.... |.+..-+.--.-.|.+.|.+..|..-++..++..+. |+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4567888999999999999999999875 446667777788899999999999999998876543 444444444433
No 364
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.08 E-value=39 Score=21.96 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=16.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKN 450 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 450 (557)
.-++.+.|++++|.+..+.+++ +.|+..-..
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 3345566666666666666665 455554333
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.99 E-value=61 Score=25.56 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..+-++.....++.|++.....-+.+|.+..++..|.++|+-.+.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555667777777777788888888888888887777643
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.06 E-value=1.8e+02 Score=29.30 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=63.8
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 92 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
..++.....+++..++.+-+..-...+..+|...| .+-..|..++.+|..+ ..+.-..+++++.+.... |...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34566667777888887777777777777777765 4666777777777777 456667777777665432 3333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
|. .+...++.+.+..+|.+++.
T Consensus 138 La-~~yEkik~sk~a~~f~Ka~y 159 (711)
T COG1747 138 LA-DKYEKIKKSKAAEFFGKALY 159 (711)
T ss_pred HH-HHHHHhchhhHHHHHHHHHH
Confidence 33 33344777777777777653
No 367
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.50 E-value=90 Score=29.22 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
+.-+..+.|+..+|.+.|+.+.+. ..+..-..+...|+.++....-+.....++.+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444567777777777766531 1111111233446666665555555555544443
No 368
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.38 E-value=2e+02 Score=29.50 Aligned_cols=164 Identities=12% Similarity=0.110 Sum_probs=106.2
Q ss_pred HhhhccchHHHHHHHHHHHhcCCC-------CCCH---hhHHHHHHHHHhcCChhHHHHHHHHH-------HhCCCCC--
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWW-------DFNE---MDFLMLITAYGKQGDFNKAEKVLSFM-------NKKGYAP-- 129 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~g~~~-- 129 (557)
++.+.+.+.++...|......... ..++ .+...+..++..+|+.+-|..+.++. ....+.|
T Consensus 247 ~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 247 KFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred EeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 345666788888877776654310 1122 23445677788889888777766543 3322222
Q ss_pred -----------CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHhHh
Q 008708 130 -----------SVVSHTAL---MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV-EANKFKEAEEVFMTLLD 194 (557)
Q Consensus 130 -----------~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~ 194 (557)
|...|-+| |..+.+.|.+..|+++.+-+.+..+.-|+.....+|+.|+ ++.++.--+++++....
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33334333 4566788999999999998888777768888888888775 66788888888887754
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 008708 195 EEKSPLKPDQKMFHMMIYMYKKAGG---YEKARKLFALMAE 232 (557)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 232 (557)
..+...-|+..--.+|+..|..... -+.|...+.++..
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 4444455666555567777776655 3456666655554
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.16 E-value=1.7e+02 Score=28.67 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=43.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHhC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVV--SHTALMEAYGR--GGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 160 (557)
.+..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455566889999999999999987 555554 45566666543 56788999999987654
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.76 E-value=83 Score=24.98 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008708 114 KAEKVLSFMNKKGYAP-SVVSHTALMEAYGRGGRYKNAEAIFRR 156 (557)
Q Consensus 114 ~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 156 (557)
.+.++|..|...|+-. ....|..-...+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777776665433 345566666677777777777777654
No 371
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.72 E-value=2.4e+02 Score=30.03 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=89.6
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
+...+.+++|+.+.+.............+....|..+.-.|++++|-...-.|... +...|..-+..+...++...
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch
Confidence 44455677777765544332211113456778899999999999999999998864 77788888877777776654
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH--------------HHhHhccCCCCCCCHHHHHHHHHHHH
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF--------------MTLLDEEKSPLKPDQKMFHMMIYMYK 215 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (557)
...+ +-...+..++..|..++..+.. .+...-.++. .....+-+. ...+......|+..|.
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-~Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-NSESTALLEVLAHLYL 516 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-hccchhHHHHHHHHHH
Confidence 4333 2222233566777777776665 2211111111 000000000 0111223344778888
Q ss_pred HcCCHHHHHHHHHHHHH
Q 008708 216 KAGGYEKARKLFALMAE 232 (557)
Q Consensus 216 ~~g~~~~A~~~~~~~~~ 232 (557)
..++++.|+.++-..++
T Consensus 517 ~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQD 533 (846)
T ss_pred HccChHHHHHHHHhccC
Confidence 88888888888766654
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=59.34 E-value=1.7e+02 Score=27.94 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 008708 112 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE---ANKFKEAEEV 188 (557)
Q Consensus 112 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~ 188 (557)
.+.-+.++++.++.+ +.+...+..++..+.+....++..+.++++....+. +...|...+..... .-.++....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 355567777777764 456777778888888888888888888888776433 66677776665443 2345666666
Q ss_pred HHHhHhcc---CCCC------CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008708 189 FMTLLDEE---KSPL------KPDQ-----KMFHMMIYMYKKAGGYEKARKLFALMAERGV 235 (557)
Q Consensus 189 ~~~~~~~~---~~~~------~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 235 (557)
|.+.+..- ..+. .++. .++..+...+..+|..+.|..+++.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 66655420 0110 1111 2233344555667888888888888777543
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.13 E-value=11 Score=29.94 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 105 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY 141 (557)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 141 (557)
...+.|.-..|..+|.+|++.|-+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34556777888899999999987776 577777543
No 374
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.81 E-value=2e+02 Score=28.85 Aligned_cols=239 Identities=10% Similarity=0.157 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhccc--------C-CHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 008708 220 YEKARKLFALMAERGVQQSTVTYNSLMSFE--------T-NYKEVSKIYDQMQRAG-LQP-DVVSYALLINAYGKARREE 288 (557)
Q Consensus 220 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--------~-~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~ 288 (557)
.+....+|+...+. .|+...|+..+..+ | .......+++.....+ ..+ ....|..+.-.++..+...
T Consensus 298 ~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 298 ESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 34455777777763 34555565555432 2 3444555666555432 233 3455666666666665543
Q ss_pred H-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHH--HHH
Q 008708 289 E-ALAVFEEMLDAGVRPTHKAYNILLDAFAISG-MVDQ-ARTVFKCMRRDRCSPDICSYTTMLSAYVNASD-MEG--AEK 362 (557)
Q Consensus 289 ~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~--A~~ 362 (557)
+ |..+..+. +..+...|..-+....+.. ++.- -..+|......-..+....|+... .|+ ++. -..
T Consensus 376 ~~a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~ 446 (568)
T KOG2396|consen 376 EVAVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDL 446 (568)
T ss_pred HHHHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHH
Confidence 3 33333232 3445555554444444221 2221 122233333332334444555444 222 111 112
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 008708 363 FFRRLKQDGFVPNVITY-GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG--KNKDFDSAVVWYKEMES 439 (557)
Q Consensus 363 ~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 439 (557)
++......+ .|+..++ +.+++.+.+.|-..+|..+|..+... .+|+...|..++..=. .+-+..-+..+++.|..
T Consensus 447 Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~ 524 (568)
T KOG2396|consen 447 IISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR 524 (568)
T ss_pred HHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH
Confidence 233333333 5555554 46777788889999999999998876 3667788887776322 22237778888888865
Q ss_pred -CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 440 -CGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 440 -~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.| .|+..|...+..-...|..+.+-.++.++.
T Consensus 525 ~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 525 EFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 45 777888877777778888888777665543
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.47 E-value=1.7e+02 Score=28.58 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDIC--SYTTMLSAYV--NASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 369 (557)
.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 333332 2333333332 33455555555555443
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.13 E-value=40 Score=34.14 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=65.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+...|+...|...+.........-..+....|.....+.|..-.|-.++.+.+... ...+.++-.+.+++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34458888888888877654322233445567777778888888888888877653 34566777888889899999999
Q ss_pred HHHHHHHHhC
Q 008708 431 VVWYKEMESC 440 (557)
Q Consensus 431 ~~~~~~m~~~ 440 (557)
++.|+++.+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.70 E-value=89 Score=24.81 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 394 KMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
.+.++|..|..+|+--. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555554433322 34445555555555555555555543
No 378
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.58 E-value=1.5e+02 Score=26.78 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA-ISGMVDQARTVFKCM 332 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 332 (557)
.++..+-+.++++++...++++...+...+..-.+.|-.+|- ..|....+++++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 345555666666666666666666554444444444444442 123333444444443
No 379
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.83 E-value=48 Score=20.97 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=15.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 138 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 138 (557)
+.|-..++..+++.|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444555555555555555444444444443
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.37 E-value=54 Score=28.34 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=26.0
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..|++.+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367888888888888888888888888877776
No 381
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.20 E-value=1.1e+02 Score=25.05 Aligned_cols=51 Identities=10% Similarity=0.050 Sum_probs=29.1
Q ss_pred HcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 353 NASDMEGAEKFFRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..++++++..++..|.-.. -.+...++. ...+...|++++|..+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566777777776665431 011222332 33456677777777777777654
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.09 E-value=1.7e+02 Score=27.11 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NGIKPNQTIF 414 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 414 (557)
+++.....|..+|.+.+|.++.++....+ +.+...+..|+..+...|+--.+.+-++++.+ .|+..+-..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455568899999999999999999876 77888999999999999998888877777653 4665554443
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.88 E-value=2.7e+02 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 352 VNASDMEGAEKFFRRLKQDGF-VPN-------VITYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~-~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
+-.+++..|...++.+....- .|+ ..++...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356889999999998876321 111 3333344444556799999999998
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.47 E-value=36 Score=22.99 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 412 TIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
.-.-.+|.+|...|++++|.++++++.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333445666666666666666666654
No 385
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.29 E-value=50 Score=20.87 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=16.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
+.|-.+++..++++|.+.|+..++..+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555544443
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.13 E-value=1.2e+02 Score=24.88 Aligned_cols=80 Identities=9% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDG-----FVPNVITYGTLIKGYAKVNN-LEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
.|+++.-....+++...+.+++.+.... -..+..+|.+++.+.++..- ---+..+|.-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555553210 01222334455555444333 22334444444444445555555555
Q ss_pred HHHHHh
Q 008708 418 MDAYGK 423 (557)
Q Consensus 418 ~~~~~~ 423 (557)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 554443
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.60 E-value=37 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=9.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 008708 346 TMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m 367 (557)
.+|.+|...|++++|.++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 388
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.55 E-value=31 Score=33.94 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=44.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 316 FAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 394 (557)
+.+.++++.|..++.++++. .|| ++.|..-..++.+.+++..|+.=+..+.+.. +-....|..-..++.+.+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHH
Confidence 34445555555555555544 232 2223333345555555555555555444432 2222233333344444444555
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 395 MMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
|...|+.... +.|+..-....+.
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHH
Confidence 5555544443 2444444444443
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.47 E-value=79 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56667777777777777777776665
No 390
>PRK11619 lytic murein transglycosylase; Provisional
Probab=53.24 E-value=3.1e+02 Score=29.21 Aligned_cols=268 Identities=8% Similarity=0.005 Sum_probs=126.2
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 81 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
++-.++.+...++.....=...+..+.+.+++......+.. .+.+...-.....+....|+.++|......+-..
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 55555555544444333334455556666666665552211 1345666666777777788877776666666544
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHH--HHHHHhHhccCCCCCCCHHHHHHHHHHH-----------H-HcCCHHHHHHH
Q 008708 161 GPRPSALTYQIILKLFVEANKFKEAE--EVFMTLLDEEKSPLKPDQKMFHMMIYMY-----------K-KAGGYEKARKL 226 (557)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~A~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~-~~g~~~~A~~~ 226 (557)
|.. .+.....++..+.+.|.+.... +=+..++. ..+...-..++..+ . -..+...+...
T Consensus 159 g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~------~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~ 231 (644)
T PRK11619 159 GKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMK------AGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETF 231 (644)
T ss_pred CCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHH
Confidence 432 3445566666666555433221 11222221 11111111111111 0 00111111111
Q ss_pred HHHHHHcCCCCCHHHHH---HHhc--ccCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008708 227 FALMAERGVQQSTVTYN---SLMS--FETNYKEVSKIYDQMQRAG-LQPDV--VSYALLINAYGKARREEEALAVFEEML 298 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~---~ll~--~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 298 (557)
+.. +.++...-. ..+. ...+.+.|..++....... ..+.. ..+..+.......+...+|...+....
T Consensus 232 ~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 232 ART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred hhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 111 111211111 0111 2345566777776654332 22221 223333333333322455666665543
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 299 DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 299 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
... .+......-+......++++.+...+..|.... .....-..-+..++...|+.++|..+|+.+.
T Consensus 307 ~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 307 MRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred ccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 322 233334444445557788888877777775432 2234445566677677888888888888764
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.00 E-value=67 Score=27.77 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 117 KVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 117 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
+..++..+. .|+...|..++.++...|+.++|.++..++...
T Consensus 132 ~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 132 EWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333344443 578888888888888888888888888887764
No 392
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.80 E-value=3.4e+02 Score=29.56 Aligned_cols=220 Identities=13% Similarity=0.094 Sum_probs=114.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHhc----ccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 008708 214 YKKAGGYEKARKLFALMAERGVQQST-------VTYNSLMS----FETNYKEVSKIYDQMQRA----GLQPDVVSYALLI 278 (557)
Q Consensus 214 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~----~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li 278 (557)
.....++.+|..++.++...-..|+. ..|+.+-. ..++.+.+.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568889998888887654322221 13333222 257778887777666543 2234556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHH--HHHHHcCC--HHHHHHHHHHHHhC---CC---CCCHHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDAGVRPTHKA---YNILL--DAFAISGM--VDQARTVFKCMRRD---RC---SPDICSYT 345 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li--~~~~~~g~--~~~A~~~~~~~~~~---~~---~~~~~~~~ 345 (557)
.+..-.|++++|..+..+..+....-+... |..+. ..+...|. ..+....|...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888888999999888877655322223332 22222 23445563 23333334333222 00 11223444
Q ss_pred HHHHHHHHcCCHHHHHHHHHH----HHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----cCHHHHH
Q 008708 346 TMLSAYVNASDMEGAEKFFRR----LKQDGFVPNVIT--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIK----PNQTIFT 415 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~ 415 (557)
.+..++.+ .+.+..-... .......|-... +..|+......|+.++|...+.++...... ++...-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 45555554 3333222222 112211122222 236777888889999998888887753222 2222222
Q ss_pred HHHHH--HHhcCChhHHHHHHHH
Q 008708 416 TIMDA--YGKNKDFDSAVVWYKE 436 (557)
Q Consensus 416 ~l~~~--~~~~g~~~~A~~~~~~ 436 (557)
..+.. ....|+...|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33332 3356777776666555
No 393
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.63 E-value=3.3e+02 Score=30.52 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc
Q 008708 271 VVSYALLINAYGKAR--REEEALAVFEEMLDA 300 (557)
Q Consensus 271 ~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~ 300 (557)
..-...++.+|.+.+ ++++|+....++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344567888898888 889999999988765
No 394
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.25 E-value=1.9e+02 Score=27.40 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=23.4
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCcCHHHHH--HHHHHHHhcCChhHHHHHHHHHHh
Q 008708 388 KVNNLEKMMEIYDKMRVN---GIKPNQTIFT--TIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+.++.++|+++++++.+. .-.|+...|. ....++...|+.+++.+.+.+..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334555555555554421 1133433332 233344455555555555555443
No 395
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=50.54 E-value=96 Score=33.30 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhc
Q 008708 78 VVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-------------APSVVSHTALMEAYGRG 144 (557)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-------------~~~~~~~~~li~~~~~~ 144 (557)
...+.++.+.+..+++.+......++. ...|++..|+.++++....+- ..+...+..++..+ ..
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~ 258 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AA 258 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-Hc
Confidence 344444444444344444444333333 236778888888776554320 11222233333332 23
Q ss_pred CChHHHHHHHHHHHhCCCC
Q 008708 145 GRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 145 g~~~~A~~~~~~m~~~~~~ 163 (557)
|++.+++.+++++...|..
T Consensus 259 ~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 259 GDGPEILAVADEMALRSLS 277 (830)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5556666666665555443
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.27 E-value=99 Score=22.63 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=15.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 147 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 147 (557)
..|+.+.|.+++..+. +| +..+...++++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 3444555555555444 32 12344444444444443
No 397
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.26 E-value=2e+02 Score=26.22 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=84.5
Q ss_pred CCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh---c---ccCCHHHHHHHHHHHHHC---C
Q 008708 197 KSPLKPDQKMFHMMIYM-YKKAGGYEKARKLFALMAERGVQQSTVTYNSLM---S---FETNYKEVSKIYDQMQRA---G 266 (557)
Q Consensus 197 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll---~---~~~~~~~a~~~~~~~~~~---~ 266 (557)
.++..||+..-|..-.. -.+....++|+.-|++..+........-|.++- . ..+++++....|.++... .
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34456666543332111 123346778888888777654333333333322 2 246666666666665431 0
Q ss_pred C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--
Q 008708 267 L--QPDVVSYALLINAYGKARREEEALAVFEEMLDAG-VRPTH----KAYNILLDAFAISGMVDQARTVFKCMRRDRC-- 337 (557)
Q Consensus 267 ~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 337 (557)
+ .-+..+.|+++.......+.+.-..+++.-++.- -..+. .|-+.|...|...+.+.+..++++++.....
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1 1233445555555555555555544444332210 00111 1234555566666666666666666543210
Q ss_pred --C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 338 --S-------PDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 338 --~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
. .-...|..-|+.|....+-.+...+|++...
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 0 1123455555666666666666666665543
No 398
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.18 E-value=4.4e+02 Score=29.82 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 227 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (557)
-|..+++.+-+.+-.+.+.++-..+++.-....+.-..+++.+.+.....|.+-+|...+
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 356667777777777777777777765322222222344555666666666666665443
No 399
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.92 E-value=6.8 Score=36.53 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=82.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChhH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 429 (557)
....|.++.|++.|...+..+ ++....|..-.+++.+.++...|++-+....+. .||. .-|-.=..+-.-.|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 456788999999999998876 778888888889999999999999999888864 4553 334333444556899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 430 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
|...+....+.++.+... ..+-...-..+..++-....++
T Consensus 201 aa~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHH
Confidence 999999999876655443 3333334444444444444443
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.34 E-value=1.1e+02 Score=24.94 Aligned_cols=60 Identities=23% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 120 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
+.+.+.|++++.. -..++..+...+..-.|.++++++.+.++..+..|.-..+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344445443322 23344555555555666666666666655555555444444554444
No 401
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.03 E-value=2.4e+02 Score=26.38 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=36.1
Q ss_pred CCHHHHHHHHH-HHHHCCCCCCH----HHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 250 TNYKEVSKIYD-QMQRAGLQPDV----VSYALLINAYGKARRE-EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD 323 (557)
Q Consensus 250 ~~~~~a~~~~~-~~~~~~~~~~~----~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (557)
..++++....+ +|.+.++ |+. ..|..++++---..+- .-|.+.++. ..+|..|+.+++..|+.+
T Consensus 269 ~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHH
Confidence 34556555554 4555544 343 3466666654322211 112223332 346888999999999877
Q ss_pred HHH
Q 008708 324 QAR 326 (557)
Q Consensus 324 ~A~ 326 (557)
-.+
T Consensus 339 L~L 341 (412)
T KOG2297|consen 339 LEL 341 (412)
T ss_pred HHH
Confidence 554
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.01 E-value=1.4e+02 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=9.9
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|.+.|.+++|.++++...+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555443
No 403
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.46 E-value=1.3e+02 Score=23.10 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYK 435 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 435 (557)
..++|..+.+.+...+. -...+--+-+..+.+.|+|++|+ ..-.. ...||...|-++- -.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~-~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQC-HCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHTT-S--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhccc-CCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45566666666655441 22222333344556666666661 11111 1245555554443 336666666666666
Q ss_pred HHHhCC
Q 008708 436 EMESCG 441 (557)
Q Consensus 436 ~m~~~~ 441 (557)
++-..|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665443
No 404
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.39 E-value=2.6e+02 Score=26.60 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=30.9
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.-+.++.++|.++++++.+.-...-.|+...|. ..++++...|+..++.+.+++..+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334456666666666665433333344444433 344555566666666666666554
No 405
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.23 E-value=3.1e+02 Score=27.55 Aligned_cols=107 Identities=13% Similarity=0.015 Sum_probs=75.1
Q ss_pred HHHHcCCHHHHHHHHHHHHh---CCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCcCH---
Q 008708 350 AYVNASDMEGAEKFFRRLKQ---DGFVPN-----VITYGTLIKGYAKVNNLEKMMEIYDKMRV-------NGIKPNQ--- 411 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~---~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~p~~--- 411 (557)
.+.-.|++.+|.+++...-- .|...+ -..+|.|.....+.|.+.-+..+|.+... .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 45667999999998875422 221112 22347777777788888888888877763 4655532
Q ss_pred --------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 008708 412 --------TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 458 (557)
Q Consensus 412 --------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 458 (557)
.+||+ .-.|...|++-.|.+.|.+.... +.-++..|-.+..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23443 33577899999999999999774 57788999999998864
No 406
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.94 E-value=1.7e+02 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=12.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~ 369 (557)
..|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 355666666666666666554
No 407
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.89 E-value=1.3e+02 Score=24.54 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 008708 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 460 (557)
++...+.+.|++++.. -..++..+...++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445566677777653 34566777777777899999999998776666777666677777666
No 408
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.60 E-value=4e+02 Score=28.58 Aligned_cols=168 Identities=14% Similarity=0.209 Sum_probs=100.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAP---SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
-++-+.+.+.+++|+++-+..... .| -...+...|..+.-.|++++|-...-.|.. -+..-|...+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 466778889999999887765443 44 345788889999999999999999888854 366777777777777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHH
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 258 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~ 258 (557)
.++....-.+ +- ......+..+|..++..+.. .+ -..+++...+- +...|+.+.-. .++
T Consensus 436 ~~~l~~Ia~~---lP---t~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~W----p~~Lys~l~ii-------sa~ 494 (846)
T KOG2066|consen 436 LDQLTDIAPY---LP---TGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEW----PGHLYSVLTII-------SAT 494 (846)
T ss_pred ccccchhhcc---CC---CCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhC----ChhhhhhhHHH-------hhc
Confidence 7766543333 21 11122455678888887766 22 22222222221 22233222110 011
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008708 259 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEML 298 (557)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 298 (557)
-.++.+. -. +...-..|+..|...+++..|+.++-...
T Consensus 495 ~~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 495 EPQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred chHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 1111111 11 22223348888999999999998887764
No 409
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=46.08 E-value=1.7e+02 Score=24.01 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDR-----CSPDICSYTTMLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~ 383 (557)
+.++.-....+.+...+.+++.+..-. -..+..+|.+++.+..+..- ---+..+|+-+.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444445555555555442210 01223345555555544333 223444555555444555555555555
Q ss_pred HHHHH
Q 008708 384 KGYAK 388 (557)
Q Consensus 384 ~~~~~ 388 (557)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55443
No 410
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.00 E-value=2e+02 Score=24.94 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=41.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPDI--CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN 391 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 391 (557)
..+..+|++++|...++.........+. .+--.|.......|.+++|+.+++.....+ -.......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCc
Confidence 3445556666666555555432111010 111123334455556666666555444332 122223334455555666
Q ss_pred HHHHHHHHHHHHHC
Q 008708 392 LEKMMEIYDKMRVN 405 (557)
Q Consensus 392 ~~~a~~~~~~m~~~ 405 (557)
-++|..-|.+..+.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666655554
No 411
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.72 E-value=3.8e+02 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHhcCCCCCCCCcccceeecc
Q 008708 458 TADERNEANELLGNFNHPNNEPGINGLSISVD 489 (557)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 489 (557)
..|++.+|.+.+-.+...+..|......++.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 45778888777777777777777777666544
No 412
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.68 E-value=1.7e+02 Score=28.88 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEM 297 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~ 297 (557)
.+..-+...|.++.|.+++++=
T Consensus 123 ~laadhvAAGsFetAm~LLnrQ 144 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQ 144 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHH
T ss_pred CcHHHHHHhCCHHHHHHHHHHH
Confidence 4566678889999999888863
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.92 E-value=1.1e+02 Score=27.82 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 008708 134 HTALMEAYGRGGRYKNAEAIFRRMQS----SG-PRPSALTYQIILKLFVEANKFKEAEEVFMTL 192 (557)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 192 (557)
.-.+..-|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33566777777888888887777642 23 2234555666777777778877776665544
No 414
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=44.00 E-value=2.3e+02 Score=25.07 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
-.+.....+.|+.++|.++|..+...+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345556677888888888888887643
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.88 E-value=30 Score=27.61 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=16.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 424 NKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
.|.-..|..+|++|++.|-+||. |..|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34455566777777776666653 444443
No 416
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.34 E-value=2.4e+02 Score=25.39 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=25.4
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHH
Q 008708 71 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK-QGDFNKAEKVLSFMN 123 (557)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 123 (557)
...++++.+.+++..+...+ ..++..--+.|..+|-. -|....+++++..+.
T Consensus 12 eq~eRy~dmv~~mk~~~~~~-~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 12 EQAERYDDMVEYMKQLIEMN-PELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHTTHHHHHHHHHHHHHHTS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 44556666666666666653 34555444444444432 244444555554443
No 417
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=43.24 E-value=2.7e+02 Score=25.75 Aligned_cols=131 Identities=8% Similarity=0.074 Sum_probs=75.4
Q ss_pred CCHHHHHHHhccc-CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHH
Q 008708 237 QSTVTYNSLMSFE-TNYKEVSKIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFEEML----DAGVRPTHKAYN 310 (557)
Q Consensus 237 ~~~~~~~~ll~~~-~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~ 310 (557)
.|...+|.++... .+.++..+-+++.... |-.--...+..+...|++.++.+.+.++..+.. ..|.+.|.....
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k 158 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK 158 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence 3445556665532 2333333333333332 233345678889999999999999888877654 345555554322
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 311 -ILLDAFAISGMVDQARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 311 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
.|.-.|....-+++.++..+.|.++|..-+. .+|..+. +....++.+|-.++.+...
T Consensus 159 iRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 159 IRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 2333444555577888888888888754322 2333222 2234567788877776654
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.20 E-value=1.8e+02 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008708 213 MYKKAGGYEKARKLFALMAERGVQQS 238 (557)
Q Consensus 213 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 238 (557)
..+..|+.+-+..++ +.|..++
T Consensus 8 ~A~~~g~~~iv~~Ll----~~g~~~n 29 (413)
T PHA02875 8 DAILFGELDIARRLL----DIGINPN 29 (413)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCC
Confidence 344566665544443 4565554
No 419
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=42.32 E-value=4.2e+02 Score=30.31 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=100.1
Q ss_pred HHHhcCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhCCCCCCHHHHHH
Q 008708 280 AYGKARREEEALA------VFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM-------RRDRCSPDICSYTT 346 (557)
Q Consensus 280 ~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~ 346 (557)
.....|.+.+|.+ ++......-.++....|..+...+.+.|+.++|+..-... .....+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444556665555 5553333323455667888888999999999998765432 22222234455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CcCHH
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQD-------GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GI--KPNQT 412 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~--~p~~~ 412 (557)
+.-.+...++...|...+.+.... ..||...+++.+-..+...++++.|.++++.+.+. |. -.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666677888888887776542 23455556666655566668999999999988752 21 23456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
+|..+.+.+...+++..|....+.
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhh
Confidence 677777777777777776655443
No 420
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=2.6e+02 Score=25.19 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=45.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHH
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTH-KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS-YTTMLSAYVNASDME 358 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~ 358 (557)
|.....++.|+..|.+.+.. .|+. .-|+.-+.++.+..+++.+..--.+.++. .||.+- ...+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55555667777766666553 4555 33445555666666666665544444432 344332 233344555566666
Q ss_pred HHHHHHHHH
Q 008708 359 GAEKFFRRL 367 (557)
Q Consensus 359 ~A~~~~~~m 367 (557)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 776666665
No 421
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.10 E-value=3.6e+02 Score=26.79 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHhccCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPL-KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~ 261 (557)
++...++...+.....+. ..+......++... .|+...++.+++.+...+... ..+....++..
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I-------------t~~~v~~~~~~ 218 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI-------------TLELLEEALQK 218 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC-------------CHHHHHHHHhh
Confidence 444455554432211122 34444455554433 677777777776664431111 11222223322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008708 262 MQRAGLQPDVVSYALLINAYGK---ARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 316 (557)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 316 (557)
.... .......+..+++++.+ .++.+.|+.++..|.+.|..|....-..++.++
T Consensus 219 ~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 219 RAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred hhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2111 11122223344444443 467777888888887777655544444444343
No 422
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.19 E-value=18 Score=33.92 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=84.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHH
Q 008708 316 FAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 394 (557)
....|.++.|+..|...+... ++....|..-.+++.+.+++..|+.=+......+ ||. .-|-.-..+-...|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 446788999999999888764 5566777778889999999999999888877753 443 445555566667899999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 395 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|...+....+.++.+....| +=...-+.+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 99999999987765554433 22334445555555555555544
No 423
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.55 E-value=2e+02 Score=23.29 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 129 PSVVSHTALMEAYGRGG---RYKNAEAIFRRMQS-SGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
++..+.-.+.-++.+.. +..+.+.+++++.+ ..+.........|.-++.+.++++.+.++.+.+++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555543 34555666666664 22222333334444566677777777777766664
No 424
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.46 E-value=1.5e+02 Score=21.78 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 115 AEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 186 (557)
Q Consensus 115 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 186 (557)
+.++++.+.++|+- +......+-.+-...|+.+.|.+++..+. .|+ ..|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 44566666666532 33334443333335577777777777775 433 34666677776666655544
No 425
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.45 E-value=3.3e+02 Score=25.90 Aligned_cols=118 Identities=10% Similarity=0.087 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 008708 323 DQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK---VNNLEKMMEIY 399 (557)
Q Consensus 323 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~ 399 (557)
+.-+.++++.++.+ +.+...+...+..+.+..+.+...+.|+++.... +-+...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 44556666666553 3456666667777777777777777777777653 3356666666655544 22455555555
Q ss_pred HHHHH------CCC----CcCHH-------HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 400 DKMRV------NGI----KPNQT-------IFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 400 ~~m~~------~~~----~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
.+.+. .+. .+... ++..+...+..+|..+.|..+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 55442 111 01111 222333344678999999999999988554
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.42 E-value=61 Score=30.05 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 374 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (557)
|+..|....+.||+++|++++++..+.|+.-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 4456666666666666666666666655443
No 427
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.21 E-value=1.3e+02 Score=28.13 Aligned_cols=70 Identities=9% Similarity=-0.076 Sum_probs=43.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008708 93 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA-LMEAYGRGGRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~ 163 (557)
.-++..|...+.-..+.|.+.+...+|.+..... |.|+..|-. --.-+...++++.+..+|..-++.++.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3455566666666666677777777777777664 446666643 223345567777777777776665443
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.01 E-value=1.5e+02 Score=21.87 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=14.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
+.......|++++|.+.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566777777777666664
No 429
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=39.99 E-value=3.7e+02 Score=26.38 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCH
Q 008708 202 PDQKMFHMMIYMYKKA---GGYEKARKLFALMAERGVQQST 239 (557)
Q Consensus 202 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~ 239 (557)
.+-..+..+++++.|. .+.+.|+-++.+|.+.|..|..
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~y 284 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLY 284 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHH
Confidence 3334455556655544 5667777777777776654433
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.95 E-value=69 Score=29.73 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 169 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 169 (557)
-|+..|....+.|++++|+.++++.++.|..--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4567788888888888888888888887766333333
No 431
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.75 E-value=3.5e+02 Score=25.91 Aligned_cols=64 Identities=14% Similarity=0.309 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 392 LEKMMEIYDKMRVNGIKPNQ----TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 392 ~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
.+++..++..+++. -|+. ..|.+++......|.++..+.+|++++..|..|=...-..++..+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666667766654 3443 5677888888888988899999999998888887777676666655
No 432
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.31 E-value=5.7e+02 Score=28.27 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNK 124 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 124 (557)
|..|+..|...|+.++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56677777777777777777777665
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.28 E-value=3.2e+02 Score=25.35 Aligned_cols=116 Identities=18% Similarity=0.106 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS------ 355 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------ 355 (557)
+..+|..+|..+.+.|. ......|...|.. ..+..+|..+|++.-+.|..+...+...+...|....
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 35556666665554432 2222334444433 2356666666666666553332122233333333221
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 008708 356 -DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGI 407 (557)
Q Consensus 356 -~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 407 (557)
+...|...|.++-..+ +......+...|.. ..+.++|...|.+..+.|.
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2235777777766665 33344444444433 2367777777777777663
No 434
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.01 E-value=2.9e+02 Score=28.42 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=21.8
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 86 LRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK 125 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 125 (557)
+.+..+.+.+......++.. ..|++..|..+++++...
T Consensus 190 il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 190 LLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhc
Confidence 33333355555555444443 257888888888766543
No 435
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=38.92 E-value=73 Score=31.55 Aligned_cols=109 Identities=15% Similarity=0.041 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI-LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 355 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (557)
-+.-+.+.+.++.|+.++.++++. .|+...|-. -..++.+.+++..|+.=+...++.. +.-...|.--..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 455667888999999999999985 576555433 3478899999999998888777653 222233444445666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN 390 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 390 (557)
.+.+|...|+.... +.|+..-....+.-|-+..
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHHH
Confidence 78888888887665 4788777777777665443
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.87 E-value=3.2e+02 Score=25.31 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG------- 320 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------- 320 (557)
...|...|+.....| .......|...|.. ..+..+|..+|.+..+.|..+...+...+...|....
T Consensus 93 ~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 93 KTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred HHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 444455555444333 22223334444433 3366777777777777664332222334444443321
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 008708 321 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 371 (557)
+...|...+.+.-..+ +......+...|.. ..+..+|...|...-+.|
T Consensus 170 ~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 170 DDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 2336777777777665 44444444444433 346778888888887776
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.76 E-value=3.4e+02 Score=25.49 Aligned_cols=72 Identities=8% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCCHHHH
Q 008708 116 EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE----------ANKFKEA 185 (557)
Q Consensus 116 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----------~g~~~~A 185 (557)
.++|+.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+++.+... +.-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345555556666666555555555555555566666666665432 2224444444433 2566666
Q ss_pred HHHHHHh
Q 008708 186 EEVFMTL 192 (557)
Q Consensus 186 ~~~~~~~ 192 (557)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6665554
No 438
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.06 E-value=5.5e+02 Score=27.79 Aligned_cols=368 Identities=11% Similarity=0.055 Sum_probs=185.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHhCCCCCCHHHHH-HH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY---GRGGRYKNAEAIFRRMQSSGPRPSALTYQ-II 172 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l 172 (557)
..+..||..+.+.|++++....-..|.+.- +.+...|..-+... ...+...++..+|++.+.....++.+.+. ..
T Consensus 114 ~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y 192 (881)
T KOG0128|consen 114 AQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVVNY 192 (881)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHHHH
Confidence 445678999999999988877777776652 44666776655433 23467788888888877654444333221 11
Q ss_pred H----HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--H
Q 008708 173 L----KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM---MIYMYKKAGGYEKARKLFALMAERGVQQSTVTY--N 243 (557)
Q Consensus 173 l----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~ 243 (557)
+ ..+-+.++++....+|.+++.............|.. +-..|...-..+....+|..-+..+...+...+ .
T Consensus 193 ~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~ 272 (881)
T KOG0128|consen 193 LVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLS 272 (881)
T ss_pred HHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 1 122334678888888888875322222222223333 233444444556666676666555422222111 1
Q ss_pred HHh------cccCCHHHHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH---
Q 008708 244 SLM------SFETNYKEVSKI-------YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG-VRPTH--- 306 (557)
Q Consensus 244 ~ll------~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--- 306 (557)
..- ....+++.+.+- ++...+. ..+--..|..++..+.+.|.+-.....++++.... ..++.
T Consensus 273 ~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~ 351 (881)
T KOG0128|consen 273 EQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIG 351 (881)
T ss_pred HHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhh
Confidence 111 011223333222 2222222 12233457777788888888766655555543221 00000
Q ss_pred ------------------------------HHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 008708 307 ------------------------------KAYNILLDAFAISGM-VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA- 354 (557)
Q Consensus 307 ------------------------------~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 354 (557)
.+|..-+-++.+.+. .......|..-...+ ...++....-..+.
T Consensus 352 y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~----~~l~~~~~~~rr~~~ 427 (881)
T KOG0128|consen 352 YGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT----VELHNDYLAYRRRCT 427 (881)
T ss_pred hhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHhhc
Confidence 011111111222111 111111111111110 00111111111111
Q ss_pred ------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHH
Q 008708 355 ------------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA-KVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDA 420 (557)
Q Consensus 355 ------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~ 420 (557)
..+..|...|.........+...+......... ..++.+.+..+|+.....|-. +.. .|-..++.
T Consensus 428 ~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~l 506 (881)
T KOG0128|consen 428 NIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINL 506 (881)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhH
Confidence 124445555554443322333333333333333 457899999999998876522 333 56666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQ--KAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
-...|+...+..+++.....-..|+. .++..+.+.-...|.++.+....++
T Consensus 507 E~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 507 EREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred HHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 66779999999988888765555643 3455555566677777776655544
No 439
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.84 E-value=5.4e+02 Score=27.62 Aligned_cols=84 Identities=14% Similarity=-0.005 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---C----------CCHHHHHHHHHHHHhc
Q 008708 78 VVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY---A----------PSVVSHTALMEAYGRG 144 (557)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~----------~~~~~~~~li~~~~~~ 144 (557)
...+.+..+.+..++..+......++... .|++..|+.+++++...|. . .+......|+.++. .
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~-~ 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII-N 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-c
Confidence 34444444445544666666665555544 5888888888887665321 1 12222333444443 3
Q ss_pred CChHHHHHHHHHHHhCCCCC
Q 008708 145 GRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 145 g~~~~A~~~~~~m~~~~~~~ 164 (557)
++...++.+++++...|..+
T Consensus 259 ~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCH
Confidence 67777788888777776653
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.47 E-value=70 Score=17.24 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 008708 392 LEKMMEIYDKMRV 404 (557)
Q Consensus 392 ~~~a~~~~~~m~~ 404 (557)
.+.+..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.10 E-value=4.1e+02 Score=26.04 Aligned_cols=60 Identities=12% Similarity=0.022 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKG--YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 158 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 158 (557)
+.-+.+.|..+|+++.|.+.|.+....- .+..+..|..+|..-.-.|+|........+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3446666666677777766666643321 01123445555555555666665555555443
No 442
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.78 E-value=2e+02 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 008708 134 HTALMEAYGRGGRYKNAEAIFRRMQS 159 (557)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~ 159 (557)
|..|+..|...|.+++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666544
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.24 E-value=2.3e+02 Score=25.67 Aligned_cols=62 Identities=6% Similarity=0.005 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhcc--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEE--KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
...+..-|...|++++|.++|+.+...- ..-..+...+...+..++.+.|+.+..+.+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677888999999999998885321 1112334455666777888888888777665443
No 444
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=35.22 E-value=4.4e+02 Score=25.78 Aligned_cols=55 Identities=13% Similarity=-0.041 Sum_probs=39.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHH--hcCChHHHHHHHHH
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVV----SHTALMEAYG--RGGRYKNAEAIFRR 156 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~--~~g~~~~A~~~~~~ 156 (557)
.+..+.+.+++..|.++|+++.++..+|... .|..+..+|. ..-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556778899999999999999886544433 3444555554 35678899999886
No 445
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.19 E-value=9.8e+02 Score=29.81 Aligned_cols=304 Identities=13% Similarity=0.088 Sum_probs=154.9
Q ss_pred chHHHHHHHHHHHh-cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008708 75 KWNVVSEVLEWLRI-QSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 153 (557)
Q Consensus 75 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 153 (557)
.|..|+..++.-.. ....+.....|..+...|+.-++++...-+...-.. +...+.. |......|++..|...
T Consensus 1398 ~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-il~~e~~g~~~da~~C 1471 (2382)
T KOG0890|consen 1398 AYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-ILEHEASGNWADAAAC 1471 (2382)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-HHHHHhhccHHHHHHH
Confidence 45566666665211 111122345566677799999999988887764221 2223333 3345567899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHH
Q 008708 154 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM-IYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 154 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
|+.+...++. ...+++-++......|.++...-..+... ....+....++.+ +.+--+.++++....... .
T Consensus 1472 ye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~----~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1472 YERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLI----INRSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchh----hccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 9999876433 46677777777777888888777665553 2334444444443 334467788887777655 1
Q ss_pred cCCCCCHHHHHH------Hhccc-CCHHHHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008708 233 RGVQQSTVTYNS------LMSFE-TNYKEVSKIYDQMQRA--------GLQ-PDVVSYALLINAYGKARREEEALAVFEE 296 (557)
Q Consensus 233 ~~~~~~~~~~~~------ll~~~-~~~~~a~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 296 (557)
+ +..+|.. ++... .+.-......+.+.+. +.. .-...|..++....-..-.... +.
T Consensus 1544 ~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~----~~ 1615 (2382)
T KOG0890|consen 1544 R----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI----EE 1615 (2382)
T ss_pred c----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 1 1122222 11111 1111111122222211 111 0112233333322211111111 11
Q ss_pred HHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHH-HHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 297 MLDAGVRPTH------KAYNILLDAFAISGMVDQARTVFKC-MRRD----RC-SPDICSYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 297 ~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~-~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (557)
.. ++.++. .-|..-+..-....+..+-+--+++ +... +. .--..+|....+...++|+++.|...+
T Consensus 1616 l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1616 LK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred hh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 10 111111 1121122211111112222222221 1111 11 123467888888888899999998888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 365 RRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 365 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
-...+.+ .| ..+--.+...-..|+...|+.++++..+.
T Consensus 1694 l~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1694 LNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred Hhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 7777665 33 34455667778889999999999988754
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.55 E-value=2.5e+02 Score=29.39 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=21.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKK--GYAPSVVSHTALMEAYGRGGRY 147 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~ 147 (557)
+|..+|...|++-.+.++++..... |-+.=...+|..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4555555555555555555544432 1111233444445555555543
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.47 E-value=4e+02 Score=25.06 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----------cCChhHH
Q 008708 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----------NKDFDSA 430 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A 430 (557)
.++|+.+.+.++.|...+|..+.-.+.+.=.+...+.+|+.+.. |+.-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777777778888888887777777777778888888888764 22225555555442 4666655
Q ss_pred HHHHH
Q 008708 431 VVWYK 435 (557)
Q Consensus 431 ~~~~~ 435 (557)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55554
No 448
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.23 E-value=5e+02 Score=27.69 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C------------CCHHHHHHHHHHHHhcC
Q 008708 79 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-A------------PSVVSHTALMEAYGRGG 145 (557)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~------------~~~~~~~~li~~~~~~g 145 (557)
..+.+..+....+...+......++ -...|.+..|+.++++....+. . .+......++..+. .+
T Consensus 188 i~~~L~~Il~~Egi~~d~eAL~~IA--~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~-~~ 264 (700)
T PRK12323 188 IVSHLDAILGEEGIAHEVNALRLLA--QAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALA-AE 264 (700)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cC
Confidence 3333333333333444444333332 2356888888888876543321 1 12233444555444 56
Q ss_pred ChHHHHHHHHHHHhCCCC
Q 008708 146 RYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~ 163 (557)
+...++.+.+.+...|..
T Consensus 265 d~~~~l~l~~~l~~~G~d 282 (700)
T PRK12323 265 DGAALLAIADEMAGRSLS 282 (700)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 777777777777666554
No 449
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.79 E-value=2.6e+02 Score=22.67 Aligned_cols=20 Identities=5% Similarity=0.172 Sum_probs=10.1
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
++.+.++++.+.++.+.+++
T Consensus 80 g~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHh
Confidence 44455555555555555544
No 450
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=33.36 E-value=1.3e+02 Score=22.27 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLS 120 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~ 120 (557)
.-..++..+.+.++++-+...+.
T Consensus 67 ~i~~~L~~L~~~~RF~l~~~fl~ 89 (94)
T PF13877_consen 67 FIFEILEALSKVKRFDLAVMFLS 89 (94)
T ss_pred HHHHHHHHhcCCCCHHHHHHhcC
Confidence 33444555555555555554443
No 451
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.97 E-value=2.6e+02 Score=26.67 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 113 NKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 113 ~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
++...+++.+... .|+ +.-|-.++......|.++..+.+|++.+..|..|-...-..++..+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666655544 344 34567777777777777777777777777777766655555555543
No 452
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.85 E-value=1.2e+02 Score=20.83 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..++.++..++.-.-.+.++..+.++...|. .+..+|..-++.+
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3344444444444444444444444444442 3333443333333
No 453
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.48 E-value=1.8e+02 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=18.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKG 126 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g 126 (557)
.+++.+.++...++|+++++.|.++|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35566667777777777777777766
No 454
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.28 E-value=1.1e+03 Score=29.46 Aligned_cols=314 Identities=12% Similarity=0.068 Sum_probs=164.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFM----NKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
.|..+-.+++.+.+|...++.- .+. ......+-.+...|+..++++...-+...-. ..|+ .+. -+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~---a~~s--l~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRF---ADPS--LYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh---cCcc--HHH-HHHHH
Confidence 4555667788899999999983 222 1123344555569999999998888776311 1222 233 33456
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc----ccCCH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS----FETNY 252 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~ 252 (557)
...|++..|...|+.+...+ ++....++.++..-...|.++.++-..+-...+ ..+....++.+-. ..+++
T Consensus 1460 e~~g~~~da~~Cye~~~q~~----p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD----PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC----CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 67899999999999998532 333667777777777788888888766555443 2233334443221 13444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHc--------CCC-CCHHHHHHHHHHHHHc
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALL--INAYGKAR--REEEALAVFEEMLDA--------GVR-PTHKAYNILLDAFAIS 319 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~ 319 (557)
+....... ..+..+|... +....+.. +.-.-.+..+-+.+. +.. .-...|..++....-.
T Consensus 1535 D~~e~~l~-------~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS-------DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh-------cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 44444333 1122233222 22222222 111111222222211 111 1112344444433222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHH-HHhCCCC-----CCHHHHHHHHHHHHHcC
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICSYTTMLS---AYVNASDMEGAEKFFRR-LKQDGFV-----PNVITYGTLIKGYAKVN 390 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~-m~~~~~~-----p~~~~~~~l~~~~~~~g 390 (557)
.--.....++..-.......+..-|-.-+. .+.+. .+-+-.+++ +...... --..+|-...+...+.|
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~---~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI---KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH---HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 111111111110000000111111222222 22222 221111221 1111112 23467888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 391 NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 391 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
+++.|...+-.+.+.+ -+..+.-.+..+...|+...|+.++++-++.
T Consensus 1685 ~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999888877765 3345666677788999999999999998864
No 455
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.87 E-value=8.5e+02 Score=28.08 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=72.7
Q ss_pred HHHHHHhcCChhHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hCCCCCCHHH
Q 008708 102 LITAYGKQGDFNKAEK------VLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ-------SSGPRPSALT 168 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~------~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~~ 168 (557)
-.......|.+.+|.+ ++...-..-.++....|..+...+-+.|+.++|+..-.+.. .....-+...
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3444445556665555 55532222124456677788888888888888877644431 2222234445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhcc----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEE----KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
|..+...+...++...|...+.+..... ...-+|...+++.+-..+...++++.|.++.+.+..
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6666555556666666766666555421 111233344445555555555777777777766654
No 456
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=7.4e+02 Score=27.42 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCCCCHHHHH--
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGV---RPTHKAYNILLDAFAISGMV--DQARTVFKCMRRDRCSPDICSYT-- 345 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~-- 345 (557)
-|..|+..|...|+.++|++++.+.....- ..-...+-.++.-+.+.+.. +-..++-+...+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 378899999999999999999999876320 01112233344444444433 33443333333221110000111
Q ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHH-----HHHH
Q 008708 346 ----------TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN--------NLEKMMEI-----YDKM 402 (557)
Q Consensus 346 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--------~~~~a~~~-----~~~m 402 (557)
..+-.|......+-+..+++.+....-.++....+.++..|+..= +-+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 122345667778888899998887665677777788887776522 12233333 1222
Q ss_pred HH--CCCCcC--------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 403 RV--NGIKPN--------QTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 403 ~~--~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
.+ ....|. ...|....-.+.+.|+.++|+.++-..+
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 21 122222 2334444445568899999988876654
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.47 E-value=3.2e+02 Score=23.07 Aligned_cols=60 Identities=5% Similarity=-0.079 Sum_probs=37.2
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 008708 402 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADER 462 (557)
Q Consensus 402 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 462 (557)
+.+.|++++..=. .++..+...++.-.|.++++.+.+.+..++..|....+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3455666664433 34444444556667888888888776666666666666666666643
No 458
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.46 E-value=5.9e+02 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=13.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 008708 136 ALMEAYGRGGRYKNAEAIFRRM 157 (557)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m 157 (557)
.++.-|.+.+++++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3445566666666666666555
No 459
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.31 E-value=2.9e+02 Score=28.98 Aligned_cols=118 Identities=10% Similarity=0.155 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQDG--FVPNVITYGTLIKGYAKVNNLE------KMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
+|+.+|...|++.++.++++.....+ -+.-...||..++...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999987643 2333457888888999999764 3444444443 45688888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhhcCCHHHHHHHHHhcC
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL--AKTADERNEANELLGNFN 473 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 473 (557)
+.+-..--+-.-..-++.+++.. ..+.++.. |...=-.++..-++..+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~-------s~ngv~di~~~~~v~s~~ev~limd~l~ 160 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR-------SANGVIDILMHESVFSPEEVKLIMDQLN 160 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh-------hhhhHHHHHhhhccCCHHHHHHHHHhcC
Confidence 77655433333344445554431 11112222 233335677777777765
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.23 E-value=2.9e+02 Score=30.02 Aligned_cols=95 Identities=9% Similarity=0.167 Sum_probs=57.1
Q ss_pred HcCCHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHH---------------hcCChhHHHHHHHHHHhCCCCCCH
Q 008708 388 KVNNLEKMMEIYDKMRVN------GIKPNQTIFTTIMDAYG---------------KNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
..|++.+|.+.|+..+-. .-+-+..-...++..+. ..+..+.+.++-.......++|-.
T Consensus 1003 t~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H 1082 (1202)
T KOG0292|consen 1003 TEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMH 1082 (1202)
T ss_pred ccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHH
Confidence 468888888888887632 00112222333333331 123444554454555555677765
Q ss_pred H--HHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcc
Q 008708 447 K--AKNILLSLAKTADERNEANELLGNFNHPNNEPGIN 482 (557)
Q Consensus 447 ~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 482 (557)
. +....+..+.+.+++..|..+-+++.+..+.|...
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 4 45667778889999999888888887766655443
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.08 E-value=2.9e+02 Score=23.29 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=19.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 140 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
.+...+..-.|.++++.+.+.++..+..|.-..+..+.+.|
T Consensus 34 ~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 34 LMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333444455555555555555444444444444444444
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.01 E-value=2.1e+02 Score=20.88 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 432 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
++|+-....|+..|+..|..++..+...=-.+...++++.+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 463
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.66 E-value=1.6e+02 Score=22.75 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008708 110 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 145 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 145 (557)
+..-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444444444444443333333333333443333
No 464
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.55 E-value=3e+02 Score=22.48 Aligned_cols=60 Identities=17% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
.+.+.|++++..= ..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 3455677766533 2334444443 4677888999999887766677776666777776663
No 465
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.50 E-value=4.6e+02 Score=24.54 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIILKLFVE 178 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~ 178 (557)
..++..+.+.++.....+.+..+. .+..-...+..+...|++..|++++.+..+.--. ........+-.
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~---- 171 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSS---- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhH----
Confidence 346666777777777777776665 3445556677777889999999988876543100 01111111111
Q ss_pred cCCHHHHHHHHHHhHhcc--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 179 ANKFKEAEEVFMTLLDEE--KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
++++-.......++.. ..-..-|+..|..+..+|.-.|+...+.+-+...
T Consensus 172 --~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 172 --QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1122222222211110 0011467788999999999999887776544443
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.33 E-value=2.4e+02 Score=21.27 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
..|.-.|.+.|+.+.|.+-|+.
T Consensus 76 AhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHH
Confidence 3344445555555555555544
No 467
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.05 E-value=3.1e+02 Score=22.43 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 146 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 45566666666666555555555444444555444
No 468
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.61 E-value=1.1e+02 Score=20.89 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
....++.++..++...-.++++..+.+....|. .+..+|..-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 444555555555555555555555555555543 24444444444443
No 469
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=4.6e+02 Score=25.03 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG---FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTT 416 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ 416 (557)
...|--=.+-|.+..++..|...|.+-++.. ...+...|+.-..+-...|++..|+.-....+.. .|+ ...|..
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhh
Confidence 3456666777888889999999998877643 2234567877777777889999998888888764 454 445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 008708 417 IMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 417 l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
=..++....++++|..++++...
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Confidence 55667778888888888887754
No 470
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.93 E-value=1.8e+02 Score=18.94 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI 311 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 311 (557)
.+.-++.+.|+++.|.+..+.+++. .|+..-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 3455667777777777777777764 555544333
No 471
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.83 E-value=2.5e+02 Score=20.58 Aligned_cols=64 Identities=22% Similarity=0.354 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 374 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 374 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|...+|..-+....... .++. ++|+-....|+..|+..|..+++.+.-+=-++...++++.|..
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred ChHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 44556665554333322 2332 8888888889999999999999988777778888888888865
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.80 E-value=1.6e+02 Score=23.02 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 145 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 145 (557)
++..+...+..-.|.++++.+.+.+...+..|--.-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33344444444555555555555544444443333344444433
No 473
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.73 E-value=1.5e+02 Score=22.80 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=28.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 137 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
++..+...+..-.|.++++.+.+.++..+..|.-..++.+.+.|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444555555666777777777776666666666666666666643
No 474
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.69 E-value=5.2e+02 Score=24.31 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhCC-C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 147 YKNAEAIFRRMQSSG-P---RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~-~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
.+.|.+.|+.....+ . ..++.....++....+.|+.+.-..+++.... .++......++.+.+...+.+.
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~------~~~~~~k~~~l~aLa~~~d~~~ 219 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN------STSPEEKRRLLSALACSPDPEL 219 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT------TSTHHHHHHHHHHHTT-S-HHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc------cCCHHHHHHHHHhhhccCCHHH
Confidence 566777777776641 1 34555556666666677776655555555532 2355666677777777777777
Q ss_pred HHHHHHHHHHc
Q 008708 223 ARKLFALMAER 233 (557)
Q Consensus 223 A~~~~~~~~~~ 233 (557)
..++++.+...
T Consensus 220 ~~~~l~~~l~~ 230 (324)
T PF11838_consen 220 LKRLLDLLLSN 230 (324)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHcCC
Confidence 77777776664
No 475
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.46 E-value=2.4e+02 Score=21.78 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 417 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 417 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+++-+.++...++|+++++-|.+.| ..+......|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444555666666777777666665 445444444433
No 476
>PRK09857 putative transposase; Provisional
Probab=26.74 E-value=5.4e+02 Score=24.13 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 445 (557)
..++....+.++.++..++++.+.+. .++......++..-+.+.|.-+++.++.++|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555555555555543 222333344555555555555666677777777665544
No 477
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.59 E-value=2.6e+02 Score=21.33 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=8.2
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 008708 313 LDAFAISGMVDQARTVFKC 331 (557)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~ 331 (557)
+.-|...++.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444455554444444
No 478
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.54 E-value=4.7e+02 Score=23.36 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC
Q 008708 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP---SALTYQ--IILKLFVEANKFKEAEEVFMTLLDEEKSPLKP 202 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 202 (557)
.+...-+|.|+--|.-...+.+|.+.|..- .|+.| |..++. .-+......|+.+.|++....+- ..-+..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~---PeiLd~ 97 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN---PEILDT 97 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC---hHHHcc
Confidence 455666777766666665566666666443 33333 444443 45667789999999999888774 222334
Q ss_pred CHHHHHHHHH----HHHHcCCHHHHHHHHHHHH
Q 008708 203 DQKMFHMMIY----MYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 203 ~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 231 (557)
|...+..|.. -..+.|..++|+++.+.-.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 4333333221 2456677778877765533
No 479
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.53 E-value=1.3e+02 Score=17.14 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHH
Q 008708 427 FDSAVVWYKEMESCGFPPDQKAKN 450 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~~p~~~~~~ 450 (557)
++.|..+|+..+. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3445555555544 334444443
No 480
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.32 E-value=5.5e+02 Score=24.11 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC
Q 008708 111 DFNKAEKVLSFMNK-------KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA--LTYQIILKLFVEANK 181 (557)
Q Consensus 111 ~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~ 181 (557)
..++...++++... ..+.-+..+...++... .|+...|+..++.+.......+. .+
T Consensus 40 ~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a--~GDaR~aLN~LE~a~~~~~~~~~~~it------------- 104 (300)
T PRK14700 40 SLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN--EGDCRKILNLLERMFLISTRGDEIYLN------------- 104 (300)
T ss_pred CHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc--CCHHHHHHHHHHHHHhhccccCCCccC-------------
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCC-------
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA---GGYEKARKLFALMAERGVQQSTVTYNSLMSFETN------- 251 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~------- 251 (557)
.+.+++.+.........+...+..+++++.|. .+.+.|+-++..|++.|-.|....-..++.+..+
T Consensus 105 ----~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~ 180 (300)
T PRK14700 105 ----KELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQ 180 (300)
T ss_pred ----HHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHH
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 252 -YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 252 -~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
...|...++.....|.+--.......+-.++..-+...+...+....+
T Consensus 181 al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 181 ALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
No 481
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=26.17 E-value=6.9e+02 Score=25.18 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=87.1
Q ss_pred HHHHHhhhccchHHH-HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008708 65 GTLVRLKQLKKWNVV-SEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143 (557)
Q Consensus 65 ~~l~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 143 (557)
.++.+.-..|+...| .++++.++.+.+ ++.........+...|.++.+.+.+...... +.....+...+++...+
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 344444444555544 456777776653 3344445556677889999999988766543 23456788899999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
.|++++|..+-+.|....++ ++.......-..-..|-++++.-.+++++.
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 99999999999999887776 555444444445566788899988888874
No 482
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.12 E-value=3e+02 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 008708 275 ALLINAYGKARREEEALAVFEEM 297 (557)
Q Consensus 275 ~~li~~~~~~g~~~~A~~~~~~~ 297 (557)
..++.-|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 44556666777777777777665
No 483
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.04 E-value=9.1e+02 Score=26.54 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSV--VSHTALMEAYGRGGRYKNAEAIFRRM 157 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m 157 (557)
.+-..|...|++++|.++-.. .|+. .++..-...|.+.+++..|-++|-++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 467788888999998876432 2221 23334456677888899999988887
No 484
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=26.01 E-value=3.8e+02 Score=29.95 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=44.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 458 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 458 (557)
....+.++..+|..|...|+.... ..|......+.+.+.+.+|..+|+.-++....|-......+.....+
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r 161 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQR 161 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 445667777777777777666553 44555566666777777777777777665556655444444433333
No 485
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=25.74 E-value=7.2e+02 Score=25.28 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhC-CCCCCHHH
Q 008708 303 RPTHKAY-NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN--ASDMEGAEKFFRRLKQD-GFVPNVIT 378 (557)
Q Consensus 303 ~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~-~~~p~~~~ 378 (557)
.|+..++ +.++.-+.+.|-..+|..++..+.... +|+...|..+|+.-.. .-+...+..+|+.|... | .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3444433 456666677777888888887776543 5667777777663221 22366677777777653 4 56666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
|..-+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 66555555577777777777766654
No 486
>PRK09857 putative transposase; Provisional
Probab=25.49 E-value=5.7e+02 Score=23.98 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 410 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 410 (557)
..++....+.++.++..++++.+.+. .++.......+..-+...|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555556666555544 233344444556666666666677777777777776544
No 487
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.02 E-value=2.7e+02 Score=20.02 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=17.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKG 126 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g 126 (557)
++++.+.++.-.++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35556666666677777777776665
No 488
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.00 E-value=3.8e+02 Score=23.40 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRM 157 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 157 (557)
..+.+++.+...|+++.|.++|--+.... +.|+. .|..=+..+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 44577788888888888888888777653 22322 3555555555555444443444443
No 489
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.53 E-value=3.6e+02 Score=21.42 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHH
Q 008708 430 AVVWYKEMESCGFPPDQK-AKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
...+|..|..+|+--... .|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555544433332 33444444555555555555543
No 490
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.35 E-value=7.2e+02 Score=24.82 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hh-hcCCHHHHHHHHHhcCC--CCCCCCcccceeec
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL-AK-TADERNEANELLGNFNH--PNNEPGINGLSISV 488 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~-~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 488 (557)
....+|+-|...|+..+..+.++++-.- .-++.....++.. +. +...-+.|-.++..+.- ..++.-...+..++
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn~~--E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLL 424 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLNLP--EYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLL 424 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcCCc--cccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 3456788888889988888887755321 2233334444432 22 33334445555544331 22233344455555
Q ss_pred cCC
Q 008708 489 DEE 491 (557)
Q Consensus 489 ~~~ 491 (557)
++.
T Consensus 425 esa 427 (645)
T KOG0403|consen 425 ESA 427 (645)
T ss_pred hcc
Confidence 543
No 491
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=24.30 E-value=2.3e+02 Score=19.10 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=13.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
..|++-+|-++++.+-.....+....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 45555555555555543222233334444443
No 492
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.12 E-value=5.2e+02 Score=23.08 Aligned_cols=94 Identities=10% Similarity=0.096 Sum_probs=43.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMME 397 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 397 (557)
..++++.|...+..- .+.|+- -..++.++...|+...|+.+++.+.-. ..+......++.. ...+.+.+|..
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHH
Confidence 445566666555211 111111 123566666667777776666654321 1122222333333 44466666666
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 398 IYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 398 ~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+-+...+. -....+..++..+.
T Consensus 162 ~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 162 FQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred HHHhCchh---hhHHHHHHHHHHHH
Confidence 55554331 11334555555444
No 493
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.07 E-value=7e+02 Score=24.57 Aligned_cols=161 Identities=10% Similarity=0.097 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCC
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAG--VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR---------CSP 339 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~ 339 (557)
...+..+...|...|+++.|++.|.+.+.-- .+.....|..+|..-.-.|+|.....+..+..... +++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3467788889999999999999999865431 11234456667777777888988888888776541 122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHH-----HHHHHHCCCC
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDG------FVPNVITYGTLIKGYAKVNNLEKMMEI-----YDKMRVNGIK 408 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~-----~~~m~~~~~~ 408 (557)
-...+..+... ..+++..|.+.|-...... +.|...+....+.++.--++-+--..+ |+...+
T Consensus 230 kl~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~fle---- 303 (466)
T KOG0686|consen 230 KLKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLE---- 303 (466)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHh----
Confidence 22233333322 3336666665554433211 123333333333344333332222222 222222
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 409 PNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 409 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..+..+..+..-| .+++...+++++++..
T Consensus 304 l~Pqlr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 304 LEPQLREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred cChHHHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 2334444444443 4567778787777754
No 494
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=23.97 E-value=5.3e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGY 127 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 127 (557)
++..++--+...|+++.|+++.+.+++.|.
T Consensus 85 Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 85 VLMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 345555666778888888888888888774
No 495
>PHA02875 ankyrin repeat protein; Provisional
Probab=23.96 E-value=3.4e+02 Score=26.80 Aligned_cols=198 Identities=13% Similarity=0.020 Sum_probs=98.1
Q ss_pred HHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 257 KIYDQMQRAGLQPDVVS--YALLINAYGKARREEEALAVFEEMLDAGVRPTHK--AYNILLDAFAISGMVDQARTVFKCM 332 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 332 (557)
++++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++.-
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 34555556677666432 234455556777765 344455566555432 1123445556778877665555432
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 008708 333 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 410 (557)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 410 (557)
.......+.. -.+.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+-+.. +.+.|..++
T Consensus 92 ~~~~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~----Ll~~g~~~~ 162 (413)
T PHA02875 92 KFADDVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL----LIDHKACLD 162 (413)
T ss_pred CcccccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhcCCCCC
Confidence 1110000111 123334445566654 4444455555554321 1123444556777655444 444454433
Q ss_pred H---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 411 Q---TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKA---KNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 411 ~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
. .-.+.+.. .+..|+.+ +.+.+++.|..|+... ...++......|+.+-+.-+++.-
T Consensus 163 ~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g 225 (413)
T PHA02875 163 IEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG 225 (413)
T ss_pred CCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence 2 22333333 34556644 4455666676665422 124444456678887777777653
No 496
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.38 E-value=1.7e+02 Score=22.84 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 460 (557)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3556666677778889999999998777777777666677776666
No 497
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=23.27 E-value=4.3e+02 Score=26.11 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHH-
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC---------------SYTTMLSAYVNASDMEGAEKFFRRL- 367 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m- 367 (557)
|+......+++.+-..-+-....+.++.......+.... +...|++.++-.|++..|+++++.+
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Q ss_pred ------HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 368 ------KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 368 ------~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
...-..-...+|-.++-+|.-.+++.+|.+.|....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=6.8e+02 Score=23.95 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRC-S--PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 383 (557)
..|.-=.+-|.+..++..|...|.+-++..+ . .+.+.|+.-..+-...|++..|+.=-...+... +-....|-.=.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhh
Confidence 3566667788899999999999998876532 2 345778888888888899999988888777653 33344454445
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 008708 384 KGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~ 403 (557)
.++....+++.|....++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 55666666777776665543
No 499
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.33 E-value=2.9e+02 Score=28.92 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 008708 163 RPSALTYQIILKLFVEANKFKEAEEVFMTL 192 (557)
Q Consensus 163 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 192 (557)
-.+.....-++..|.+.|-.+.|.++.+.+
T Consensus 402 ~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 402 LDTNDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp --SHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555556666666666666666666554
No 500
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.29 E-value=4e+02 Score=21.15 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
+++.+.|.... ..+.|+.-...-+..--.. +...++|..|..+|+--. +..|......+-..|++.+|.++|+.
T Consensus 50 erc~~~f~~~~--~YknD~RyLkiWi~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 50 ERCIRYFEDDE--RYKNDPRYLKIWLKYADNC---DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHhhhhh--hhcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34444444332 2455665544444333222 446789999998877655 45677888888899999999999863
Done!