Query 008708
Match_columns 557
No_of_seqs 728 out of 3553
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 09:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-35 3.6E-40 310.0 42.0 440 22-478 78-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-33 1.4E-37 290.5 37.3 419 64-514 88-568 (597)
3 4g26_A Pentatricopeptide repea 100.0 7.2E-30 2.5E-34 255.2 25.8 205 255-459 9-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-26 7.7E-31 226.0 47.5 375 70-460 9-387 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-26 4.9E-31 227.4 45.9 362 102-477 5-370 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.6E-28 5.6E-33 245.4 25.9 183 205-387 27-221 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 2.6E-22 8.9E-27 201.1 39.1 314 94-453 24-370 (450)
8 2gw1_A Mitochondrial precursor 99.9 8.4E-23 2.9E-27 208.3 35.4 398 67-475 13-478 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1E-21 3.5E-26 196.7 41.6 329 63-437 29-406 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.7E-20 5.9E-25 192.3 38.5 394 68-475 33-491 (537)
11 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 4.8E-24 175.1 41.6 316 96-457 3-351 (359)
12 2gw1_A Mitochondrial precursor 99.9 2.1E-21 7.1E-26 198.0 28.2 370 96-477 6-446 (514)
13 3ieg_A DNAJ homolog subfamily 99.9 5.6E-19 1.9E-23 170.8 40.0 319 130-478 2-338 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.4E-19 4.9E-24 185.5 35.9 366 96-477 25-459 (537)
15 3hym_B Cell division cycle pro 99.9 5.8E-19 2E-23 168.7 32.0 290 95-461 21-320 (330)
16 2xm6_A Protein corresponding t 99.9 2.4E-16 8.4E-21 159.3 51.8 347 96-475 39-432 (490)
17 3hym_B Cell division cycle pro 99.9 1.1E-18 3.7E-23 166.8 32.5 285 59-386 21-314 (330)
18 2xm6_A Protein corresponding t 99.8 2.8E-16 9.5E-21 158.9 48.6 335 73-441 56-433 (490)
19 1fch_A Peroxisomal targeting s 99.8 9.2E-19 3.1E-23 170.2 25.8 288 144-472 38-356 (368)
20 4eqf_A PEX5-related protein; a 99.8 8.9E-19 3.1E-23 170.2 22.0 266 165-471 64-352 (365)
21 1fch_A Peroxisomal targeting s 99.8 6.2E-18 2.1E-22 164.3 27.9 307 106-438 35-357 (368)
22 2ooe_A Cleavage stimulation fa 99.8 1.4E-15 4.7E-20 155.4 43.7 393 70-474 22-491 (530)
23 4eqf_A PEX5-related protein; a 99.8 1.2E-17 3.9E-22 162.3 25.4 276 130-436 64-352 (365)
24 2ooe_A Cleavage stimulation fa 99.8 1.7E-15 5.7E-20 154.8 42.2 374 94-477 11-456 (530)
25 3cv0_A Peroxisome targeting si 99.8 8.3E-17 2.8E-21 153.4 26.5 153 281-436 148-311 (327)
26 3cv0_A Peroxisome targeting si 99.8 1.8E-16 6.2E-21 151.0 28.6 153 316-473 148-313 (327)
27 3mkr_A Coatomer subunit epsilo 99.8 1.3E-16 4.4E-21 148.9 26.7 251 141-439 9-263 (291)
28 4g1t_A Interferon-induced prot 99.8 9E-16 3.1E-20 154.5 34.7 364 94-477 49-461 (472)
29 1b89_A Protein (clathrin heavy 99.7 2.9E-17 9.9E-22 156.5 15.6 283 108-439 15-307 (449)
30 3mkr_A Coatomer subunit epsilo 99.7 2.3E-15 7.8E-20 140.4 26.9 252 104-405 7-264 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1E-17 3.6E-22 172.1 9.6 119 341-459 127-249 (1134)
32 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.6E-22 170.1 11.1 119 270-388 126-248 (1134)
33 1xi4_A Clathrin heavy chain; a 99.7 5.2E-13 1.8E-17 142.0 43.1 315 100-469 1053-1378(1630)
34 1b89_A Protein (clathrin heavy 99.7 1.5E-15 5.3E-20 144.7 20.9 279 72-398 15-304 (449)
35 2pl2_A Hypothetical conserved 99.7 8E-15 2.7E-19 130.6 22.3 201 268-474 2-213 (217)
36 3uq3_A Heat shock protein STI1 99.7 4.7E-14 1.6E-18 129.1 26.9 98 132-232 6-107 (258)
37 1xi4_A Clathrin heavy chain; a 99.7 5.5E-12 1.9E-16 134.3 45.2 350 60-471 985-1341(1630)
38 3uq3_A Heat shock protein STI1 99.7 5.3E-14 1.8E-18 128.8 26.2 225 96-369 5-235 (258)
39 2pl2_A Hypothetical conserved 99.6 3.8E-14 1.3E-18 126.2 23.3 200 128-368 2-212 (217)
40 4g1t_A Interferon-induced prot 99.6 6.1E-13 2.1E-17 133.7 34.3 313 129-448 49-407 (472)
41 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.4E-18 127.5 25.1 131 97-232 4-136 (272)
42 2h6f_A Protein farnesyltransfe 99.6 2.1E-13 7.1E-18 131.5 26.6 229 97-367 98-344 (382)
43 2ho1_A Type 4 fimbrial biogene 99.6 5E-13 1.7E-17 122.0 27.5 207 204-448 37-244 (252)
44 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7.3E-18 126.0 25.3 249 169-456 6-265 (272)
45 1ouv_A Conserved hypothetical 99.6 5.4E-12 1.8E-16 116.7 34.7 223 165-440 5-251 (273)
46 1ouv_A Conserved hypothetical 99.6 2.4E-12 8.1E-17 119.1 31.6 229 202-480 4-256 (273)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.9E-14 1.3E-18 131.2 19.3 189 272-469 78-269 (275)
48 2h6f_A Protein farnesyltransfe 99.6 3.6E-13 1.2E-17 129.9 26.5 248 131-421 97-363 (382)
49 2vq2_A PILW, putative fimbrial 99.6 8.8E-13 3E-17 117.8 27.5 201 203-439 7-210 (225)
50 3e4b_A ALGK; tetratricopeptide 99.6 1.6E-13 5.4E-18 136.5 24.2 371 69-473 12-419 (452)
51 2q7f_A YRRB protein; TPR, prot 99.6 1.8E-13 6E-18 124.1 22.2 211 204-452 23-233 (243)
52 2ho1_A Type 4 fimbrial biogene 99.6 3.9E-13 1.3E-17 122.7 24.5 203 271-477 37-240 (252)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.5E-18 128.3 20.7 121 108-233 17-140 (275)
54 3e4b_A ALGK; tetratricopeptide 99.6 3.1E-13 1.1E-17 134.4 24.0 332 39-406 17-388 (452)
55 2vq2_A PILW, putative fimbrial 99.6 8.6E-13 2.9E-17 117.9 24.3 202 270-475 7-211 (225)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.5E-13 5E-18 124.7 19.0 205 269-478 21-225 (243)
57 3sf4_A G-protein-signaling mod 99.6 1.3E-13 4.3E-18 135.6 19.6 281 94-403 7-334 (406)
58 3sf4_A G-protein-signaling mod 99.6 3.6E-13 1.2E-17 132.3 22.0 307 128-462 6-363 (406)
59 4a1s_A PINS, partner of inscut 99.5 8.2E-13 2.8E-17 130.1 21.5 284 97-439 49-371 (411)
60 4a1s_A PINS, partner of inscut 99.5 1.3E-12 4.6E-17 128.6 23.0 286 131-474 48-371 (411)
61 3vtx_A MAMA; tetratricopeptide 99.5 5.2E-12 1.8E-16 109.1 23.1 171 270-446 4-174 (184)
62 3ro2_A PINS homolog, G-protein 99.5 7.1E-13 2.4E-17 126.3 19.0 277 134-439 8-331 (338)
63 4e6h_A MRNA 3'-END-processing 99.5 2.4E-10 8.2E-15 117.6 37.8 426 43-478 50-573 (679)
64 3ro2_A PINS homolog, G-protein 99.5 1.9E-12 6.4E-17 123.4 20.8 281 97-405 6-332 (338)
65 4abn_A Tetratricopeptide repea 99.5 4.1E-12 1.4E-16 127.2 23.7 214 252-472 84-318 (474)
66 3ulq_A Response regulator aspa 99.5 5.5E-12 1.9E-16 122.9 22.8 302 70-403 22-366 (383)
67 3vtx_A MAMA; tetratricopeptide 99.5 8.4E-12 2.9E-16 107.7 21.0 170 304-477 3-172 (184)
68 3ulq_A Response regulator aspa 99.5 1.3E-11 4.3E-16 120.4 24.6 237 106-368 22-291 (383)
69 2ond_A Cleavage stimulation fa 99.5 3E-11 1E-15 113.8 26.0 220 253-477 33-272 (308)
70 2ond_A Cleavage stimulation fa 99.4 2E-10 6.7E-15 108.2 30.2 217 183-439 33-269 (308)
71 3nf1_A KLC 1, kinesin light ch 99.4 1E-12 3.5E-17 123.9 13.3 179 131-334 27-223 (311)
72 4abn_A Tetratricopeptide repea 99.4 1.2E-11 4.3E-16 123.7 21.5 212 147-399 84-315 (474)
73 1hz4_A MALT regulatory protein 99.4 5.1E-10 1.7E-14 108.5 31.1 276 136-439 19-321 (373)
74 3nf1_A KLC 1, kinesin light ch 99.4 3.7E-12 1.3E-16 120.0 15.1 247 201-473 24-305 (311)
75 3q15_A PSP28, response regulat 99.4 1.9E-10 6.4E-15 111.8 27.4 237 171-439 106-364 (378)
76 1hz4_A MALT regulatory protein 99.4 8E-10 2.7E-14 107.1 30.6 278 99-404 17-321 (373)
77 3as5_A MAMA; tetratricopeptide 99.3 7.6E-11 2.6E-15 101.4 18.2 162 308-473 10-171 (186)
78 3as5_A MAMA; tetratricopeptide 99.3 1.7E-10 5.9E-15 99.2 20.3 165 271-439 8-172 (186)
79 4i17_A Hypothetical protein; T 99.3 2.8E-10 9.4E-15 101.9 22.0 153 270-426 6-168 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1.6E-10 5.3E-15 120.5 22.0 166 270-439 8-173 (723)
81 3q15_A PSP28, response regulat 99.3 1E-09 3.5E-14 106.5 26.3 234 208-473 105-363 (378)
82 4e6h_A MRNA 3'-END-processing 99.3 6.2E-08 2.1E-12 99.8 40.3 430 23-458 61-586 (679)
83 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5.2E-15 120.6 19.5 164 305-473 8-172 (723)
84 3edt_B KLC 2, kinesin light ch 99.3 4.2E-11 1.4E-15 110.9 13.8 220 256-475 28-281 (283)
85 4i17_A Hypothetical protein; T 99.3 4E-10 1.4E-14 100.9 19.4 170 304-477 5-211 (228)
86 1qqe_A Vesicular transport pro 99.3 4.5E-10 1.5E-14 104.7 19.9 197 279-477 45-271 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 1.5E-10 5E-15 107.2 13.6 158 282-439 12-197 (283)
88 3urz_A Uncharacterized protein 99.1 6.5E-09 2.2E-13 91.4 18.8 176 272-454 5-198 (208)
89 2fo7_A Synthetic consensus TPR 99.1 6.8E-09 2.3E-13 83.6 17.3 127 310-439 5-131 (136)
90 2fo7_A Synthetic consensus TPR 99.1 4.4E-09 1.5E-13 84.8 15.9 130 343-475 3-132 (136)
91 3mv2_B Coatomer subunit epsilo 99.1 5.7E-08 2E-12 88.8 24.2 163 271-439 100-281 (310)
92 3qky_A Outer membrane assembly 99.1 4.7E-09 1.6E-13 96.0 17.3 191 269-463 13-249 (261)
93 1qqe_A Vesicular transport pro 99.1 1.6E-08 5.6E-13 94.0 20.4 211 181-439 32-268 (292)
94 2pzi_A Probable serine/threoni 99.0 5.3E-09 1.8E-13 109.5 17.3 184 282-472 402-602 (681)
95 3rjv_A Putative SEL1 repeat pr 99.0 5.2E-08 1.8E-12 85.8 20.8 176 254-441 4-198 (212)
96 3mv2_B Coatomer subunit epsilo 99.0 2.2E-08 7.4E-13 91.6 18.6 182 290-478 85-285 (310)
97 3qky_A Outer membrane assembly 99.0 3.2E-08 1.1E-12 90.4 20.0 189 129-335 13-224 (261)
98 2uy1_A Cleavage stimulation fa 99.0 1.6E-06 5.4E-11 86.6 32.5 341 110-473 28-411 (493)
99 3urz_A Uncharacterized protein 99.0 1.9E-08 6.4E-13 88.4 16.5 165 307-478 5-189 (208)
100 4ga2_A E3 SUMO-protein ligase 99.0 2.5E-09 8.7E-14 88.4 10.0 143 314-461 5-149 (150)
101 3rjv_A Putative SEL1 repeat pr 98.9 8E-08 2.7E-12 84.6 19.0 179 288-478 3-200 (212)
102 3qou_A Protein YBBN; thioredox 98.9 4E-08 1.4E-12 91.1 17.5 167 268-438 114-282 (287)
103 4ga2_A E3 SUMO-protein ligase 98.9 5.1E-09 1.7E-13 86.6 9.8 146 277-426 3-149 (150)
104 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.4E-07 8.1E-12 82.4 21.4 186 271-477 4-215 (225)
105 2r5s_A Uncharacterized protein 98.9 2.4E-08 8.1E-13 85.1 14.1 161 274-438 9-171 (176)
106 2pzi_A Probable serine/threoni 98.9 2.8E-08 9.7E-13 103.9 17.5 173 247-426 402-583 (681)
107 2ifu_A Gamma-SNAP; membrane fu 98.9 5.5E-08 1.9E-12 91.2 17.5 184 279-467 44-253 (307)
108 2vsy_A XCC0866; transferase, g 98.9 4.6E-08 1.6E-12 100.4 18.2 151 250-404 3-156 (568)
109 3qou_A Protein YBBN; thioredox 98.9 3.7E-08 1.3E-12 91.3 15.7 164 303-472 114-281 (287)
110 2vsy_A XCC0866; transferase, g 98.9 3.7E-08 1.3E-12 101.1 17.1 154 284-441 2-158 (568)
111 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.1E-07 3.7E-12 84.7 17.7 154 305-478 3-179 (225)
112 3dra_A Protein farnesyltransfe 98.9 2.6E-06 8.8E-11 78.7 27.2 218 112-369 49-286 (306)
113 2uy1_A Cleavage stimulation fa 98.8 2.1E-06 7.1E-11 85.8 27.8 332 108-472 6-380 (493)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.5E-07 1.2E-11 80.4 19.9 145 309-471 9-168 (213)
115 3dra_A Protein farnesyltransfe 98.8 4E-06 1.4E-10 77.4 27.1 220 145-404 47-286 (306)
116 2r5s_A Uncharacterized protein 98.8 4.3E-08 1.5E-12 83.5 13.0 163 63-232 9-172 (176)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 1.8E-07 6E-12 87.7 17.0 132 73-231 4-142 (307)
118 4gco_A Protein STI-1; structur 98.8 2.1E-07 7E-12 74.1 14.4 107 342-452 14-121 (126)
119 3u3w_A Transcriptional activat 98.8 3E-06 1E-10 78.6 24.4 163 311-473 80-264 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.8 5.5E-06 1.9E-10 76.9 26.2 167 272-439 76-265 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.9E-07 3E-11 77.8 19.1 128 272-405 7-150 (213)
122 4gco_A Protein STI-1; structur 98.7 4E-07 1.4E-11 72.4 14.7 109 97-211 14-122 (126)
123 3gyz_A Chaperone protein IPGC; 98.7 2.4E-07 8.1E-12 76.2 13.7 103 341-447 36-138 (151)
124 2c2l_A CHIP, carboxy terminus 98.7 1.2E-07 4E-12 87.6 13.1 195 270-475 3-199 (281)
125 1na0_A Designed protein CTPR3; 98.7 8.6E-07 2.9E-11 69.9 15.7 114 341-457 9-122 (125)
126 1a17_A Serine/threonine protei 98.7 7.6E-07 2.6E-11 74.5 16.0 128 342-472 14-143 (166)
127 1a17_A Serine/threonine protei 98.7 1E-06 3.5E-11 73.7 16.5 128 308-438 15-144 (166)
128 3u3w_A Transcriptional activat 98.7 8.4E-07 2.9E-11 82.5 17.2 166 67-232 82-265 (293)
129 3gyz_A Chaperone protein IPGC; 98.6 1.9E-07 6.5E-12 76.8 10.7 98 131-233 36-133 (151)
130 1na0_A Designed protein CTPR3; 98.6 1.6E-06 5.4E-11 68.3 15.8 116 96-217 9-124 (125)
131 2vyi_A SGTA protein; chaperone 98.6 7.6E-07 2.6E-11 70.9 14.0 118 341-461 12-129 (131)
132 3q7a_A Farnesyltransferase alp 98.6 4.2E-05 1.4E-09 71.3 27.3 173 109-321 67-257 (349)
133 2lni_A Stress-induced-phosphop 98.6 6.3E-07 2.1E-11 71.8 13.3 117 340-460 15-132 (133)
134 2qfc_A PLCR protein; TPR, HTH, 98.6 6.2E-06 2.1E-10 76.5 21.8 173 133-333 77-264 (293)
135 4gcn_A Protein STI-1; structur 98.6 1.1E-06 3.7E-11 70.0 13.6 108 342-452 9-122 (127)
136 2vgx_A Chaperone SYCD; alterna 98.6 1.7E-07 5.9E-12 77.0 9.1 98 340-439 20-117 (148)
137 2e2e_A Formate-dependent nitri 98.6 3.5E-07 1.2E-11 77.8 11.4 118 319-439 23-143 (177)
138 2vyi_A SGTA protein; chaperone 98.6 1.8E-06 6.3E-11 68.6 15.1 116 308-426 14-129 (131)
139 2lni_A Stress-induced-phosphop 98.6 1.4E-06 4.9E-11 69.6 14.4 119 94-218 14-132 (133)
140 3gw4_A Uncharacterized protein 98.6 9.9E-07 3.4E-11 76.7 14.1 157 282-439 3-175 (203)
141 3upv_A Heat shock protein STI1 98.6 1.5E-06 5.1E-11 69.0 14.0 97 341-439 4-100 (126)
142 2c2l_A CHIP, carboxy terminus 98.6 7.9E-07 2.7E-11 82.0 13.9 99 130-233 3-101 (281)
143 3gw4_A Uncharacterized protein 98.6 7.6E-07 2.6E-11 77.4 13.1 156 317-473 3-174 (203)
144 4f3v_A ESX-1 secretion system 98.5 1.5E-06 5E-11 78.4 14.6 134 308-446 104-241 (282)
145 3q7a_A Farnesyltransferase alp 98.5 6.5E-05 2.2E-09 70.1 26.1 178 139-356 62-257 (349)
146 1p5q_A FKBP52, FK506-binding p 98.5 2.1E-06 7.3E-11 81.3 16.4 153 73-232 126-293 (336)
147 1elw_A TPR1-domain of HOP; HOP 98.5 4.2E-06 1.4E-10 65.1 15.6 110 341-453 4-113 (118)
148 1p5q_A FKBP52, FK506-binding p 98.5 2.3E-06 8E-11 81.0 16.6 94 342-437 197-291 (336)
149 2vgx_A Chaperone SYCD; alterna 98.5 5.8E-07 2E-11 73.8 10.3 99 130-233 20-118 (148)
150 2e2e_A Formate-dependent nitri 98.5 7E-07 2.4E-11 75.9 10.9 124 352-478 21-147 (177)
151 3dss_A Geranylgeranyl transfer 98.5 2.5E-05 8.6E-10 72.5 21.9 183 287-475 90-304 (331)
152 4f3v_A ESX-1 secretion system 98.5 1.5E-05 5.2E-10 71.8 19.0 191 108-335 18-237 (282)
153 1elr_A TPR2A-domain of HOP; HO 98.5 2E-06 6.8E-11 68.5 12.1 111 342-455 5-121 (131)
154 2xcb_A PCRH, regulatory protei 98.4 1.7E-06 5.9E-11 70.4 11.0 96 342-439 19-114 (142)
155 3q49_B STIP1 homology and U bo 98.4 1.2E-05 4E-10 64.7 15.8 99 339-439 7-105 (137)
156 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.8E-10 62.0 15.5 96 308-405 6-101 (118)
157 3sz7_A HSC70 cochaperone (SGT) 98.4 5.9E-06 2E-10 69.1 13.6 100 95-196 10-109 (164)
158 3dss_A Geranylgeranyl transfer 98.4 0.00042 1.4E-08 64.3 27.1 121 108-234 41-175 (331)
159 3upv_A Heat shock protein STI1 98.4 1.1E-05 3.9E-10 63.8 14.6 95 308-404 6-100 (126)
160 4gcn_A Protein STI-1; structur 98.4 4.4E-06 1.5E-10 66.4 12.1 96 98-194 10-111 (127)
161 2dba_A Smooth muscle cell asso 98.4 1.7E-05 5.7E-10 64.6 15.9 111 340-455 27-142 (148)
162 3sz7_A HSC70 cochaperone (SGT) 98.4 8E-06 2.7E-10 68.2 14.1 98 340-439 10-107 (164)
163 2fbn_A 70 kDa peptidylprolyl i 98.4 7.2E-06 2.5E-10 71.0 14.0 121 343-466 40-176 (198)
164 2kck_A TPR repeat; tetratricop 98.3 5.4E-06 1.9E-10 63.7 11.5 95 343-439 8-105 (112)
165 3q49_B STIP1 homology and U bo 98.3 1E-05 3.5E-10 65.0 13.6 100 94-195 7-106 (137)
166 2fbn_A 70 kDa peptidylprolyl i 98.3 1.1E-05 3.9E-10 69.7 14.7 95 342-438 89-184 (198)
167 2kck_A TPR repeat; tetratricop 98.3 3.6E-06 1.2E-10 64.8 10.3 102 375-478 5-109 (112)
168 2xcb_A PCRH, regulatory protei 98.3 7.2E-06 2.5E-10 66.6 12.3 94 99-194 21-114 (142)
169 1hxi_A PEX5, peroxisome target 98.3 6E-06 2E-10 65.0 11.1 92 346-439 22-113 (121)
170 2dba_A Smooth muscle cell asso 98.3 3.8E-05 1.3E-09 62.4 16.2 97 306-405 28-128 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.3 9.2E-06 3.1E-10 64.5 11.9 106 309-417 7-118 (131)
172 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.8E-10 63.4 11.2 95 98-194 19-113 (121)
173 4b4t_Q 26S proteasome regulato 98.2 8.9E-05 3E-09 72.9 20.2 194 279-472 12-242 (434)
174 3rkv_A Putative peptidylprolyl 98.2 1.6E-05 5.5E-10 66.2 12.2 69 375-446 62-130 (162)
175 2xev_A YBGF; tetratricopeptide 98.2 4.4E-05 1.5E-09 60.5 13.6 92 346-439 7-104 (129)
176 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4.2E-10 66.4 10.7 137 96-232 9-157 (164)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.5E-05 8.7E-10 77.3 14.3 128 342-473 269-413 (457)
178 4b4t_Q 26S proteasome regulato 98.1 0.00012 4.1E-09 72.0 19.2 212 211-438 11-243 (434)
179 1ihg_A Cyclophilin 40; ppiase 98.1 2.4E-05 8.1E-10 75.0 13.4 91 375-467 272-362 (370)
180 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.4E-10 65.3 11.3 95 344-438 52-156 (164)
181 3k9i_A BH0479 protein; putativ 98.1 4.4E-06 1.5E-10 65.3 6.7 85 109-194 3-89 (117)
182 2xev_A YBGF; tetratricopeptide 98.1 8.4E-05 2.9E-09 58.8 14.5 95 99-194 5-104 (129)
183 1wao_1 Serine/threonine protei 98.1 7.6E-06 2.6E-10 81.5 10.0 120 349-471 14-135 (477)
184 3n71_A Histone lysine methyltr 98.1 2.9E-05 9.9E-10 76.8 12.6 134 176-334 319-463 (490)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.7E-05 1.6E-09 75.4 14.3 96 341-438 317-413 (457)
186 1wao_1 Serine/threonine protei 98.1 1.2E-05 4.2E-10 80.0 10.0 124 100-229 10-135 (477)
187 1ihg_A Cyclophilin 40; ppiase 98.0 5.4E-05 1.9E-09 72.5 13.7 122 98-225 225-362 (370)
188 3n71_A Histone lysine methyltr 98.0 2.2E-05 7.4E-10 77.7 10.7 135 140-299 318-463 (490)
189 3k9i_A BH0479 protein; putativ 98.0 7.9E-06 2.7E-10 63.8 6.2 85 354-439 3-89 (117)
190 3rkv_A Putative peptidylprolyl 98.0 0.00011 3.6E-09 61.1 12.6 65 340-405 62-126 (162)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.9E-10 75.1 8.5 149 307-477 180-330 (338)
192 2hr2_A Hypothetical protein; a 97.9 0.00013 4.3E-09 59.3 12.0 96 344-439 14-130 (159)
193 2hr2_A Hypothetical protein; a 97.9 0.00016 5.6E-09 58.7 12.5 65 168-232 59-130 (159)
194 2if4_A ATFKBP42; FKBP-like, al 97.9 3E-05 1E-09 73.4 9.6 129 97-232 180-327 (338)
195 1dce_A Protein (RAB geranylger 97.9 0.00076 2.6E-08 68.4 19.9 174 286-464 44-244 (567)
196 1klx_A Cysteine rich protein B 97.8 0.00056 1.9E-08 54.9 14.4 88 348-441 32-127 (138)
197 1klx_A Cysteine rich protein B 97.8 0.00065 2.2E-08 54.5 14.6 110 286-406 10-127 (138)
198 1dce_A Protein (RAB geranylger 97.8 0.00098 3.3E-08 67.6 19.2 173 252-429 45-244 (567)
199 1zu2_A Mitochondrial import re 97.8 5.6E-05 1.9E-09 61.3 7.7 99 353-455 14-133 (158)
200 2l6j_A TPR repeat-containing p 97.8 3.2E-05 1.1E-09 59.3 6.0 64 375-439 3-66 (111)
201 2kat_A Uncharacterized protein 97.7 0.0002 6.8E-09 55.4 9.5 79 114-194 3-81 (115)
202 2l6j_A TPR repeat-containing p 97.7 0.0002 7E-09 54.7 8.9 93 340-435 3-102 (111)
203 2kat_A Uncharacterized protein 97.6 0.00042 1.4E-08 53.5 10.2 78 360-439 4-81 (115)
204 1na3_A Designed protein CTPR2; 97.6 0.00073 2.5E-08 49.2 10.7 60 379-439 12-71 (91)
205 1na3_A Designed protein CTPR2; 97.6 0.00069 2.4E-08 49.4 10.4 84 340-425 8-91 (91)
206 1zu2_A Mitochondrial import re 97.5 0.00027 9.3E-09 57.2 7.9 94 322-419 18-132 (158)
207 3ma5_A Tetratricopeptide repea 97.4 0.00091 3.1E-08 50.1 8.8 63 340-403 6-68 (100)
208 3ma5_A Tetratricopeptide repea 97.4 0.00069 2.4E-08 50.7 7.9 61 96-157 7-67 (100)
209 3qww_A SET and MYND domain-con 97.3 0.00081 2.8E-08 65.3 9.9 97 178-299 310-410 (433)
210 3qwp_A SET and MYND domain-con 97.3 0.0025 8.7E-08 61.9 13.0 103 172-299 293-399 (429)
211 3qww_A SET and MYND domain-con 97.0 0.0023 7.9E-08 62.2 9.2 87 353-439 310-410 (433)
212 3qwp_A SET and MYND domain-con 96.9 0.0051 1.8E-07 59.8 11.3 92 348-439 294-399 (429)
213 3ly7_A Transcriptional activat 96.9 0.052 1.8E-06 50.6 17.3 136 95-236 193-342 (372)
214 2kc7_A BFR218_protein; tetratr 96.9 0.0022 7.6E-08 47.6 6.5 57 382-439 6-63 (99)
215 3ly7_A Transcriptional activat 96.8 0.024 8.1E-07 52.9 14.2 76 373-452 274-349 (372)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0032 1.1E-07 46.7 7.1 62 101-163 5-67 (99)
217 3mkq_A Coatomer beta'-subunit; 96.6 0.23 7.9E-06 52.8 22.2 101 104-231 607-708 (814)
218 2v5f_A Prolyl 4-hydroxylase su 96.5 0.019 6.6E-07 43.0 9.6 70 93-162 2-77 (104)
219 1pc2_A Mitochondria fission pr 96.5 0.023 8E-07 45.4 9.9 90 357-450 14-108 (152)
220 3bee_A Putative YFRE protein; 96.3 0.079 2.7E-06 38.6 11.5 48 112-160 25-72 (93)
221 3bee_A Putative YFRE protein; 96.2 0.032 1.1E-06 40.7 8.7 67 373-440 3-72 (93)
222 2v5f_A Prolyl 4-hydroxylase su 96.1 0.061 2.1E-06 40.2 10.1 70 375-446 4-79 (104)
223 3u64_A Protein TP_0956; tetrat 96.1 0.55 1.9E-05 42.0 17.4 103 357-471 179-294 (301)
224 3mkq_A Coatomer beta'-subunit; 95.9 0.11 3.8E-06 55.3 15.3 130 275-437 633-762 (814)
225 3mkq_B Coatomer subunit alpha; 95.9 0.6 2.1E-05 38.3 16.2 130 314-473 13-142 (177)
226 1pc2_A Mitochondria fission pr 95.7 0.057 1.9E-06 43.2 8.6 82 113-195 15-100 (152)
227 3mkq_B Coatomer subunit alpha; 95.5 0.54 1.8E-05 38.6 13.9 103 103-229 12-114 (177)
228 1wy6_A Hypothetical protein ST 95.4 0.67 2.3E-05 35.7 14.4 65 377-442 92-156 (172)
229 1wy6_A Hypothetical protein ST 94.7 1.1 3.8E-05 34.6 15.4 141 317-479 18-158 (172)
230 3u64_A Protein TP_0956; tetrat 94.7 0.11 3.9E-06 46.3 8.4 88 76-163 179-272 (301)
231 1nzn_A CGI-135 protein, fissio 94.2 0.37 1.3E-05 36.9 9.2 87 356-446 16-107 (126)
232 4h7y_A Dual specificity protei 93.7 0.56 1.9E-05 37.0 9.4 105 129-238 11-128 (161)
233 1nzn_A CGI-135 protein, fissio 93.3 0.48 1.7E-05 36.3 8.4 82 113-195 18-103 (126)
234 4h7y_A Dual specificity protei 93.3 0.97 3.3E-05 35.7 10.0 100 340-441 12-124 (161)
235 4gns_B Protein CSD3, chitin bi 90.1 5.6 0.00019 41.2 14.6 126 100-231 252-398 (754)
236 2ff4_A Probable regulatory pro 89.8 2.3 7.9E-05 40.4 11.0 54 383-437 178-231 (388)
237 2ff4_A Probable regulatory pro 89.6 2.4 8.3E-05 40.3 11.0 71 344-415 174-249 (388)
238 3lvg_A Clathrin heavy chain 1; 89.0 1.1E-05 3.8E-10 76.4 -25.5 260 95-401 53-316 (624)
239 4b4t_P 26S proteasome regulato 88.9 17 0.00059 35.1 18.1 94 345-438 141-245 (445)
240 4fhn_B Nucleoporin NUP120; pro 88.9 7.5 0.00026 43.0 15.7 187 276-469 817-1043(1139)
241 3ffl_A Anaphase-promoting comp 88.6 1.9 6.4E-05 34.8 7.7 121 97-233 21-151 (167)
242 4gns_B Protein CSD3, chitin bi 87.7 9.7 0.00033 39.4 14.4 53 349-402 345-397 (754)
243 1v54_E Cytochrome C oxidase po 87.5 2.6 8.9E-05 30.5 7.0 43 396-438 30-72 (109)
244 1v54_E Cytochrome C oxidase po 86.9 3.7 0.00013 29.8 7.5 63 356-419 25-87 (109)
245 3o48_A Mitochondria fission 1 86.2 9.9 0.00034 29.3 11.3 72 373-446 37-111 (134)
246 3ffl_A Anaphase-promoting comp 86.1 1.6 5.6E-05 35.1 6.1 126 344-482 23-158 (167)
247 3o48_A Mitochondria fission 1 85.7 7.6 0.00026 29.9 9.3 70 406-477 35-109 (134)
248 1y8m_A FIS1; mitochondria, unk 84.9 12 0.00042 29.2 10.4 72 373-446 36-110 (144)
249 4fhn_B Nucleoporin NUP120; pro 84.8 13 0.00044 41.1 14.7 146 310-463 816-988 (1139)
250 2p58_C Putative type III secre 83.8 9.2 0.00031 27.6 8.2 84 69-161 16-99 (116)
251 2uwj_G Type III export protein 81.4 8.8 0.0003 27.6 7.4 84 69-161 15-98 (115)
252 2y69_E Cytochrome C oxidase su 80.9 13 0.00044 28.6 8.6 59 394-453 71-129 (152)
253 2y69_E Cytochrome C oxidase su 80.6 8.1 0.00028 29.7 7.5 62 357-419 69-130 (152)
254 4b4t_P 26S proteasome regulato 80.6 42 0.0014 32.3 21.6 102 206-334 139-246 (445)
255 1y8m_A FIS1; mitochondria, unk 79.4 20 0.0007 27.9 13.1 68 338-405 36-106 (144)
256 1qsa_A Protein (soluble lytic 79.3 57 0.0019 33.0 37.2 356 81-471 57-438 (618)
257 1zbp_A Hypothetical protein VP 77.0 7.9 0.00027 34.0 7.5 55 105-160 6-60 (273)
258 3esl_A Checkpoint serine/threo 76.3 33 0.0011 28.6 11.4 56 390-445 93-149 (202)
259 2wpv_A GET4, UPF0363 protein Y 75.9 46 0.0016 30.1 16.8 145 308-471 35-193 (312)
260 3lvg_A Clathrin heavy chain 1; 75.3 0.71 2.4E-05 44.4 0.6 217 95-327 82-325 (624)
261 4b4t_R RPN7, 26S proteasome re 74.7 23 0.00079 34.0 11.2 60 134-193 134-195 (429)
262 4b4t_R RPN7, 26S proteasome re 74.0 19 0.00065 34.6 10.4 98 97-194 132-236 (429)
263 3txn_A 26S proteasome regulato 73.6 61 0.0021 30.5 19.2 118 76-193 79-208 (394)
264 3lpz_A GET4 (YOR164C homolog); 73.1 56 0.0019 29.9 21.2 115 98-227 37-159 (336)
265 4ady_A RPN2, 26S proteasome re 72.4 1.1E+02 0.0036 32.7 25.7 20 280-299 569-588 (963)
266 1zbp_A Hypothetical protein VP 71.3 14 0.00048 32.5 7.7 112 349-473 5-127 (273)
267 2uwj_G Type III export protein 63.3 40 0.0014 24.4 8.0 78 356-441 21-98 (115)
268 2wpv_A GET4, UPF0363 protein Y 63.2 87 0.003 28.3 19.6 114 98-227 35-157 (312)
269 1qsa_A Protein (soluble lytic 63.0 1.3E+02 0.0045 30.3 29.9 52 386-438 295-346 (618)
270 2p58_C Putative type III secre 62.4 41 0.0014 24.3 8.8 78 356-441 22-99 (116)
271 2wvi_A Mitotic checkpoint seri 59.2 58 0.002 26.1 8.6 55 113-167 77-132 (164)
272 4a1g_A Mitotic checkpoint seri 58.1 67 0.0023 25.4 10.6 53 394-446 83-136 (152)
273 4a1g_A Mitotic checkpoint seri 57.0 71 0.0024 25.2 9.1 54 113-166 82-136 (152)
274 3esl_A Checkpoint serine/threo 54.7 93 0.0032 25.9 12.7 55 110-164 93-148 (202)
275 4gq2_M Nucleoporin NUP120; bet 54.5 98 0.0033 33.3 12.1 51 167-218 898-950 (950)
276 2wvi_A Mitotic checkpoint seri 53.6 85 0.0029 25.2 11.1 72 373-447 60-132 (164)
277 3lpz_A GET4 (YOR164C homolog); 51.0 1.5E+02 0.005 27.1 21.9 46 340-389 135-180 (336)
278 2d2s_A Exocyst complex compone 50.0 72 0.0025 27.4 8.4 24 101-124 23-46 (235)
279 4aez_C MAD3, mitotic spindle c 46.2 91 0.0031 26.5 8.1 55 112-166 130-185 (223)
280 3txn_A 26S proteasome regulato 43.2 2.1E+02 0.0073 26.8 24.2 93 276-368 104-208 (394)
281 3ltm_A Alpha-REP4; protein eng 42.6 1.4E+02 0.0048 24.5 18.5 171 269-459 31-201 (211)
282 2r9g_A AAA ATPase, central reg 40.6 1.6E+02 0.0054 24.5 9.8 18 354-371 27-44 (204)
283 4aez_C MAD3, mitotic spindle c 39.3 95 0.0033 26.3 7.2 54 393-446 131-185 (223)
284 3bge_A Predicted ATPase; struc 38.4 1.7E+02 0.0058 24.2 9.2 32 354-385 20-51 (201)
285 2d2s_A Exocyst complex compone 36.7 1.5E+02 0.005 25.5 8.2 91 346-439 23-119 (235)
286 2r9g_A AAA ATPase, central reg 35.9 1.9E+02 0.0064 24.0 9.9 37 283-320 26-62 (204)
287 4ady_A RPN2, 26S proteasome re 35.3 4.4E+02 0.015 28.1 31.3 251 177-439 385-657 (963)
288 3eiq_C Programmed cell death p 35.0 2.7E+02 0.0093 25.7 10.2 80 378-458 219-300 (358)
289 2xig_A Ferric uptake regulatio 34.2 1.6E+02 0.0054 23.1 7.5 58 122-180 18-75 (150)
290 3ltj_A Alpharep-4; protein eng 32.9 2E+02 0.0067 23.4 19.0 171 269-459 26-196 (201)
291 2fe3_A Peroxide operon regulat 32.0 1.6E+02 0.0053 22.9 7.2 58 122-180 13-70 (145)
292 2nsz_A Programmed cell death p 31.8 1.7E+02 0.0058 22.2 7.8 25 344-368 10-34 (129)
293 3eiq_C Programmed cell death p 30.5 2.5E+02 0.0087 25.9 9.2 66 309-375 220-287 (358)
294 2ion_A PDCD4, programmed cell 28.6 1.5E+02 0.0051 23.4 6.4 64 343-407 11-76 (152)
295 1mzb_A Ferric uptake regulatio 28.4 1.5E+02 0.0052 22.6 6.4 59 122-181 9-68 (136)
296 4gq2_M Nucleoporin NUP120; bet 28.3 4.8E+02 0.016 28.0 12.3 108 347-460 816-950 (950)
297 3ctd_A Putative ATPase, AAA fa 28.2 2.6E+02 0.009 23.4 9.0 43 276-318 37-82 (213)
298 3pvs_A Replication-associated 28.2 4E+02 0.014 25.4 13.1 23 353-375 267-289 (447)
299 2ion_A PDCD4, programmed cell 28.1 2.2E+02 0.0075 22.4 8.3 24 310-333 13-36 (152)
300 2fu4_A Ferric uptake regulatio 27.6 1.4E+02 0.0049 20.1 7.0 58 122-180 8-66 (83)
301 2fu4_A Ferric uptake regulatio 27.5 1.4E+02 0.0049 20.1 7.2 59 401-460 7-66 (83)
302 3ltj_A Alpharep-4; protein eng 26.7 2.5E+02 0.0087 22.7 16.7 152 303-471 25-176 (201)
303 4b4t_S RPN3, 26S proteasome re 26.1 4.7E+02 0.016 25.6 11.4 123 341-471 231-366 (523)
304 3eyy_A Putative iron uptake re 26.1 1.5E+02 0.005 23.1 6.0 57 122-180 10-66 (145)
305 3ctd_A Putative ATPase, AAA fa 25.2 3E+02 0.01 23.0 9.7 33 354-386 48-80 (213)
306 4ets_A Ferric uptake regulatio 25.0 2.2E+02 0.0075 22.6 7.0 45 137-181 38-84 (162)
307 2w57_A Ferric uptake regulatio 25.0 1.7E+02 0.0058 22.9 6.2 59 122-181 8-67 (150)
308 2zu6_B Programmed cell death p 24.6 3.8E+02 0.013 24.0 10.0 78 379-457 169-248 (307)
309 3bge_A Predicted ATPase; struc 24.5 3E+02 0.01 22.8 9.3 37 282-318 18-54 (201)
310 2nsz_A Programmed cell death p 23.1 2.5E+02 0.0084 21.3 9.6 24 310-333 11-34 (129)
311 3ltm_A Alpha-REP4; protein eng 23.0 3.1E+02 0.011 22.3 20.1 80 129-219 31-110 (211)
312 2keb_A DNA polymerase subunit 22.7 2.2E+02 0.0074 20.4 6.6 56 395-452 28-88 (101)
313 2o03_A Probable zinc uptake re 22.6 1.8E+02 0.0061 22.0 5.8 40 106-145 20-59 (131)
314 2fe3_A Peroxide operon regulat 21.8 2.8E+02 0.0095 21.4 7.9 61 400-461 11-71 (145)
315 4ets_A Ferric uptake regulatio 21.5 1.4E+02 0.0049 23.7 5.2 61 158-220 25-85 (162)
316 2o03_A Probable zinc uptake re 21.5 1.3E+02 0.0044 22.8 4.8 46 136-181 15-60 (131)
317 3ph0_C ASCG; type III secretio 21.4 1.6E+02 0.0055 18.5 5.2 45 70-116 16-60 (61)
318 3mwm_A ZUR, putative metal upt 21.1 1.6E+02 0.0053 22.7 5.2 33 112-144 29-61 (139)
319 3mwm_A ZUR, putative metal upt 20.8 1.3E+02 0.0043 23.2 4.6 48 135-182 17-64 (139)
320 3pvs_A Replication-associated 20.7 5.5E+02 0.019 24.4 12.6 34 318-351 267-300 (447)
321 1k1a_A B-cell lymphoma 3-encod 20.7 1.6E+02 0.0053 24.7 5.8 181 278-471 13-205 (241)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-35 Score=309.96 Aligned_cols=440 Identities=10% Similarity=0.005 Sum_probs=366.5
Q ss_pred hhchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhh
Q 008708 22 AADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMD 98 (557)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (557)
..+.+++..|+.++..+.+.+ +|+..++.+. ...+ .+...+.....+...|+++.|.++|+.+... +.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 152 (597)
T 2xpi_A 78 TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL-DITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSAC 152 (597)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHH
T ss_pred cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH-hhCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhH
Confidence 346678999999999887655 6777777543 2222 2233344445677889999999999987544 367889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKK---------------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 163 (557)
++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|++|.+.++.
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 999999999999999999999953221 22345889999999999999999999999999886543
Q ss_pred CCHHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH
Q 008708 164 PSALTYQII--------------------------------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 205 (557)
Q Consensus 164 ~~~~~~~~l--------------------------------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 205 (557)
+...+..+ +..|.+.|++++|.++|+++.+. +++..
T Consensus 233 -~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 306 (597)
T 2xpi_A 233 -CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSD 306 (597)
T ss_dssp -CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHH
T ss_pred -hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-----CchHH
Confidence 44443333 44566789999999999999742 58899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 282 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (557)
+++.++.+|.+.|++++|..+|+++.+.+.. +..+++.+... .|++++|..+++.+.+.. +.+..++..++.+|.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999999977543 45556555543 699999999999998764 447889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 283 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEK 362 (557)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (557)
+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 4568899999999999999999999999998764 4578999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 363 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|..++++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999875 668999999999999999999999999999875 56777 78999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 437 MESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 437 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.++.
T Consensus 542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 98854 557899999999999999999999999998765553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-33 Score=290.47 Aligned_cols=419 Identities=10% Similarity=0.015 Sum_probs=353.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008708 64 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143 (557)
Q Consensus 64 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 143 (557)
...+..+...++++.|.++++.+.... |+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.+
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHH
Confidence 344445677899999999999998654 57788999999999999999999999998654 6799999999999999
Q ss_pred cCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 008708 144 GGRYKNAEAIFRRMQSS---------------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 208 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (557)
.|++++|+++|+++... +.+++..+|..++.+|.+.|++++|.++|+++++.. +.+...+.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~ 238 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD----AKCYEAFD 238 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----chhhHHHH
Confidence 99999999999953222 123358899999999999999999999999998642 22333333
Q ss_pred H--------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--
Q 008708 209 M--------------------------------------MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-- 248 (557)
Q Consensus 209 ~--------------------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-- 248 (557)
. ++..|.+.|++++|.++|+++.+. .++..+|+.+...
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 2 355667889999999999998875 4688888887765
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 249 -ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 327 (557)
Q Consensus 249 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (557)
.|++++|..+|+.+.+.++. +..++..++.+|.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|..
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 69999999999999987643 77789999999999999999999999998653 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008708 328 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 407 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (557)
+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998753 4478899999999999999999999999999875 6688999999999999999999999999999763
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCc
Q 008708 408 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC----GFPPD--QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481 (557)
Q Consensus 408 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (557)
+.+..+|..++.+|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.++....
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 457899999999999999999999999999874 66787 789999999999999999999999998755442211
Q ss_pred ccceeeccCCCCCCCCCCCCcccccccCCCCCC
Q 008708 482 NGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGD 514 (557)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (557)
.+ ..++++|...|+|++
T Consensus 552 -~~---------------~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 552 -VH---------------TAIALVYLHKKIPGL 568 (597)
T ss_dssp -HH---------------HHHHHHHHHTTCHHH
T ss_pred -HH---------------HHHHHHHHHhCCHHH
Confidence 11 115677777777665
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=7.2e-30 Score=255.21 Aligned_cols=205 Identities=17% Similarity=0.268 Sum_probs=181.5
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 008708 255 VSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM---------VDQ 324 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 324 (557)
+..+.+.+.+.+..+. ...++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3445566666555544 346888999999999999999999999999999999999999999987664 789
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 325 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 325 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 008708 405 NGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 459 (557)
Q Consensus 405 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 459 (557)
.|+.||..+|++++.+|++.|++++|.+++++|.+.|..|+..||+.+...+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887753
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-26 Score=225.98 Aligned_cols=375 Identities=14% Similarity=0.094 Sum_probs=260.6
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
+...|+++.|.+.+..+.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+..+|.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 4456778888888877776652 455667777788888888888888888777653 4567788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 229 (557)
|+..|+++.+..+. +..+|..+..++.+.|++++|.+.|+++++.. +.+...+..+...+...|++++|...|++
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888775432 56678888888888888888888888887532 33455677777788888888888888888
Q ss_pred HHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 230 MAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 306 (557)
Q Consensus 230 ~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 306 (557)
+.+..+ .+...|..+.. ..|++++|...|+++.+..+. +...+..+...+...|++++|...+.+..... +.+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 776532 12334433322 356677777777777665432 45667777777777777777777777776643 3346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
.++..+..+|...|++++|...|+++.+.. +.++.+|..+...+.+.|++++|...|+++.+.. +.+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 667777777777777777777777777653 3355667777777777777777777777776653 55677777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 008708 387 AKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTAD 460 (557)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 460 (557)
...|++++|...++++.+.. +.+..++..++.+|.+.|++++|...++++.+. .| +...+..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 77777777777777776542 344667777777777777777777777777763 34 3455666665555444
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-26 Score=227.40 Aligned_cols=362 Identities=13% Similarity=0.064 Sum_probs=314.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4667888999999999999998764 4467788888999999999999999999988864 4488899999999999999
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HH---HHhcccCCHHHHHH
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT-YN---SLMSFETNYKEVSK 257 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~---~ll~~~~~~~~a~~ 257 (557)
+++|+..|+++++.. +.+..++..++.++.+.|++++|...|+++.+.. |+... +. .+....|++++|.+
T Consensus 83 ~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999998642 4556789999999999999999999999999864 33332 22 23334799999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
.|+.+.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.....
T Consensus 157 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9999998743 367899999999999999999999999999864 4567789999999999999999999999988754
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
+.+..++..+...|...|++++|...|+++.+.. +.+..+|..++.++.+.|++++|...|+++.+.. +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 3468899999999999999999999999999875 5578899999999999999999999999999863 6678999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|...++++.+..+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999998842 45678899999999999999999999999876554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.6e-28 Score=245.41 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC------------CHHHHHHHHHHHHHCCCCCCHH
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET------------NYKEVSKIYDQMQRAGLQPDVV 272 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~------------~~~~a~~~~~~~~~~~~~~~~~ 272 (557)
.+++.+|++|++.|++++|+++|++|.+.|+.||..+||.++.++. ..++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4577778888888888888888888887776666666665554321 1344455555555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
+.|+.++|.+++++|.+.|..|+..||+.++..|+
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555445555555555444444
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.6e-22 Score=201.08 Aligned_cols=314 Identities=11% Similarity=0.090 Sum_probs=248.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...+..++..|.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.++. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 456778889999999999999999999988763 457889999999999999999999999999887544 688889999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHHcCCCCC
Q 008708 174 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ---KMFHMMIYM------------YKKAGGYEKARKLFALMAERGVQQS 238 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~g~~~~A~~~~~~~~~~~~~~~ 238 (557)
.+|...|++++|.+.|+++++.. +.+. ..+..++.. +...|++++|+..|+++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------- 170 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN----PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL------- 170 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Confidence 99999999999999999998521 2333 555555444 455555555555555444
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 239 TVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 239 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
+.. +.+..++..++.+|.+.|++++|+..|+++.+.. +.+..++..+..+|..
T Consensus 171 -------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 171 -------------------------EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp -------------------------HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred -------------------------HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 332 3367788888999999999999999999987753 4567888999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSPDICSYTTM------------LSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGT 381 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ 381 (557)
.|++++|...|+++.... +.+...+..+ +..|...|++++|...|+++.+.. |+ ...+..
T Consensus 224 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKER 300 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHH
Confidence 999999999999888653 3344455444 788999999999999999998753 44 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILL 453 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 453 (557)
++.++.+.|++++|...++++.+.. +.+...|..++.+|...|++++|...++++.+ +.|+ ...+..+.
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9999999999999999999988753 44688999999999999999999999999988 4554 45555555
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.4e-23 Score=208.31 Aligned_cols=398 Identities=13% Similarity=0.072 Sum_probs=238.8
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 146 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 146 (557)
...+...|+++.|.+.|+.+.+.. |+...|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhh
Confidence 345667789999999999998876 478889999999999999999999999998875 4567899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------------h
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT----------------------------------L 192 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----------------------------------~ 192 (557)
+++|+..|+++...++. +......++..+........+.+.+.. .
T Consensus 89 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 99999999998877542 222222222222221111111111100 0
Q ss_pred HhccC-------CCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCCCCCH--------HHHHHHhc--
Q 008708 193 LDEEK-------SPLKPDQKMFHMMIYMYKK---AGGYEKARKLFALMAE-----RGVQQST--------VTYNSLMS-- 247 (557)
Q Consensus 193 ~~~~~-------~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~~~~~--------~~~~~ll~-- 247 (557)
..... ...+.+...+..+...+.. .|++++|..+|+++.+ ..-.|+. ..+..+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 00000 0002223344444444443 5666666666666655 2111211 11111111
Q ss_pred -ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 248 -FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 248 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
..|++++|...++.+.+..+. ...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 246666666666666655433 5566666666666667666766666666543 334556666666666666777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 6666666543 2245566666666666677777777666666543 3345566666666666677777766666665421
Q ss_pred C-CcC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 407 I-KPN----QTIFTTIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 407 ~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
. .++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 0 011 2256666666666 666777776666666532 334456666666666667777776666665543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1e-21 Score=196.73 Aligned_cols=329 Identities=12% Similarity=0.096 Sum_probs=266.0
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG 142 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 142 (557)
.+.....+...++++.|.++|+.+.+.. +.+...+..++.+|.+.|++++|...|+++.+.+ +.+..+|..+..+|.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3444455677899999999999998765 3568899999999999999999999999999875 457889999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSA---LTYQII------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 207 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (557)
..|++++|...|+++.+..+. +. .++..+ ...+...|++++|...|+++++.. +.+..++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~ 180 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWDAELR 180 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHH
Confidence 999999999999999886433 33 555554 445889999999999999998642 5578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
..++.+|.+.|++++|+..|+++.+.. +.+..++..++.+|...|++
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK---------------------------------NDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH---------------------------------CSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999887641 33677888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNIL------------LDAFAISGMVDQARTVFKCMRRDRCSPD-----ICSYTTMLSA 350 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~ 350 (557)
++|+..|+++.+.. +.+...+..+ ...+...|++++|..+|+++.+.. |+ ...+..+...
T Consensus 228 ~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 228 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHH
Confidence 99999999988753 3344445444 788899999999999999998753 33 4478888899
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH----------
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA---------- 420 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~---------- 420 (557)
+.+.|++++|+..++++.... +.+..+|..++.+|...|++++|...|+++.+.. +-+...+..+..+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccch
Confidence 999999999999999988764 5678899999999999999999999999998752 3346666666633
Q ss_pred --HHhcC-----ChhHHHHHHHHH
Q 008708 421 --YGKNK-----DFDSAVVWYKEM 437 (557)
Q Consensus 421 --~~~~g-----~~~~A~~~~~~m 437 (557)
|...| +.+++.+.++++
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hHHHHhCCCccCCHHHHHHHHHHH
Confidence 33444 567778888763
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.7e-20 Score=192.31 Aligned_cols=394 Identities=13% Similarity=0.108 Sum_probs=232.0
Q ss_pred HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008708 68 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 147 (557)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 147 (557)
..+...|+++.|.+.|+.+.+..+ .++..+..+..+|.+.|++++|.+.|+++.+.+ +.+..++..+..++...|++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 345667888888888888887753 467788888888888999999999998888765 44678888888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc-------------------------------
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE------------------------------- 196 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 196 (557)
++|+..|+ .....+.+.. ..+..+...+....|...++.++...
T Consensus 110 ~~A~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLS-VLSLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHH-HHhcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99988886 3332222111 11223333344445555555553210
Q ss_pred -CCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCCHH------HHHHH---hcccCCHHHHHH
Q 008708 197 -KSPLKPDQK-MFHMMIYMYK--------KAGGYEKARKLFALMAERGVQQSTV------TYNSL---MSFETNYKEVSK 257 (557)
Q Consensus 197 -~~~~~~~~~-~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l---l~~~~~~~~a~~ 257 (557)
.....+... ....+...+. ..|++++|..+|+++.+........ .+..+ ....+++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 000011111 2233332222 2246677777777666543221110 11111 112466667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
.++...+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 776666643 335566666666777777777777777766543 3355666666677777777777777777666543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcCHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-----IKPNQT 412 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~ 412 (557)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. ......
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 2244566666677777777777777777666653 4455666666777777777777777777665421 111122
Q ss_pred HHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 413 IFTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 413 ~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
.+.....++.+. |++++|...++++.+.. +.+...+..+..++.+.|++++|...++++.+.
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 233444555555 77777777777766632 334556666667777777777777777665543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=1.4e-19 Score=175.09 Aligned_cols=316 Identities=11% Similarity=0.073 Sum_probs=240.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|+..++++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4567788888899999999999999888764 446888888999999999999999999988876433 67788888889
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKP----DQKMFHMM------------IYMYKKAGGYEKARKLFALMAERGVQQST 239 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 239 (557)
+...|++++|...|+++++. .| +...+..+ ...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 149 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV------ 149 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence 99999999999999988742 23 33444444 35555556666666665555443
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008708 240 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 319 (557)
Q Consensus 240 ~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 319 (557)
. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 150 --------------------------~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 150 --------------------------C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQL 201 (359)
T ss_dssp --------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHH
T ss_pred --------------------------C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 2 2366778888888999999999999999988763 55778888888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICSYT------------TMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLI 383 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~ 383 (557)
|++++|...|++..+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+.
T Consensus 202 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERIC 279 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 99999999999887653 22333333 23667889999999999999988754 3333 2355678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAK 457 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 457 (557)
.++...|++++|...++++.+.. +.+...|..+..++...|++++|...++++.+. .|+ ...+..+..+..
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 88999999999999999998753 446888999999999999999999999999884 454 455666555544
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-21 Score=197.98 Aligned_cols=370 Identities=12% Similarity=0.022 Sum_probs=289.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+.+.|++++|+..|+++.... |+..+|..+..+|...|++++|+..++++.+.++. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4567788999999999999999999999875 79999999999999999999999999999987543 77899999999
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------CCC
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER-------------------GVQ 236 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~ 236 (557)
+...|++++|...|++++... +++......++..+........+.+.+..+... ...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG----DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS----SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcC----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999998643 233333333444333332222322222111100 000
Q ss_pred ------------------------CC-HHHHH-HHh-c----ccCCHHHHHHHHHHHHH-----CCCC--------CCHH
Q 008708 237 ------------------------QS-TVTYN-SLM-S----FETNYKEVSKIYDQMQR-----AGLQ--------PDVV 272 (557)
Q Consensus 237 ------------------------~~-~~~~~-~ll-~----~~~~~~~a~~~~~~~~~-----~~~~--------~~~~ 272 (557)
|+ ...+. ..+ . ..+++++|...|+.+.+ .... .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11 11111 111 1 15789999999999987 3111 2356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
++..+...+...|++++|...++++.+.. |+..++..+..++...|++++|...++++.... +.+..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 78888999999999999999999998875 348889999999999999999999999998764 446778999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
..|++++|...++++.+.. +.+...+..++..|...|++++|..+++++.+.. +.+...+..+..++...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999875 5577889999999999999999999999998753 4467889999999999999999999
Q ss_pred HHHHHHhCC-CCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHhcCCCCC
Q 008708 433 WYKEMESCG-FPPD----QKAKNILLSLAKT---ADERNEANELLGNFNHPNN 477 (557)
Q Consensus 433 ~~~~m~~~~-~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 477 (557)
.++++.+.. -.++ ...+..+...+.. .|++++|...++++....+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 999997631 0111 3388889999999 9999999999999875443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5.6e-19 Score=170.81 Aligned_cols=319 Identities=12% Similarity=0.070 Sum_probs=259.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
++..+..+...+...|++++|+..|+++.+..+. +..++..+...+...|++++|...++++++.. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHH
Confidence 4677888999999999999999999999887543 78899999999999999999999999998642 446788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQ-ST-VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
++.++...|++++|...|+++.+..... +. ..+..+ ..+. ....+..+...+...|++
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--------------~~~~------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL--------------VKAD------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH--------------HHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH--------------HHHH------HHHHHHHHHHHHHHccCH
Confidence 9999999999999999999998753200 11 111111 0000 112344567889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
++|+..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998864 5678899999999999999999999999998764 557889999999999999999999999999
Q ss_pred HhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChhHHH
Q 008708 368 KQDGFVPNVITYG------------TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ----TIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 368 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 431 (557)
.+.. +.+...+. .++..+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8764 44444443 33677999999999999999998753 2233 33556788999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 432 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
..++++.+.. +.+...+..+...+...|++++|...++++.+.++.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999998842 447789999999999999999999999998876553
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.4e-19 Score=185.47 Aligned_cols=366 Identities=14% Similarity=0.070 Sum_probs=284.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+.+.|++++|.+.|+++.... +.+..+|..+..+|...|++++|++.|+++.+.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4567889999999999999999999999875 458899999999999999999999999999887544 78899999999
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHH----
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER------GVQQSTVTYNSL---- 245 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l---- 245 (557)
+...|++++|...|+.+ . ..|+. ....+..+...+....|...++.+... ...|+.......
T Consensus 103 ~~~~g~~~~A~~~~~~~-~-----~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-S-----LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHHH-h-----cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 99999999999999744 2 12221 222344555666677888888887542 122222222111
Q ss_pred -------------------------hc------------ccCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 008708 246 -------------------------MS------------FETNYKEVSKIYDQMQRAGLQPD-------VVSYALLINAY 281 (557)
Q Consensus 246 -------------------------l~------------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~ 281 (557)
+. ..+++++|..+++.+.+..+. + ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 11 124678889999998876433 2 23567777889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (557)
...|++++|...++++.+. .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999986 4668889999999999999999999999998764 447888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
..++++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999998865 5567889999999999999999999999999763 4567889999999999999999999999987621
Q ss_pred -----CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHhcCCCCC
Q 008708 442 -----FPPDQKAKNILLSLAKTA----------DERNEANELLGNFNHPNN 477 (557)
Q Consensus 442 -----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 477 (557)
.......+.....++... |++++|...++++....+
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 111122344555677777 999999999999875544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.8e-19 Score=168.66 Aligned_cols=290 Identities=11% Similarity=0.019 Sum_probs=143.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 33444455555555555555555555554432 223334444445555555555555555555443222 3444444445
Q ss_pred HHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 008708 175 LFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 253 (557)
Q Consensus 175 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 253 (557)
.+...| ++++|.+.|+++++.. +.+...+..++.++...|++++|...|+++.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---------------------- 152 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE----KTYGPAWIAYGHSFAVESEHDQAMAAYFTAA---------------------- 152 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC----TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------------
Confidence 555555 5555555555554311 2233444445555555555555555444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 254 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
+.. +.+...+..+...|...|++++|...+++..
T Consensus 153 ---------------------------------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 153 ---------------------------------------------QLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp ---------------------------------------------HHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------------------------------Hhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 332 1122333334444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 334 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG--------FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+.. +.+...+..+...+...|++++|...++++.... .+.+..++..++.+|...|++++|...++++.+.
T Consensus 187 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 187 SIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 332 2234445555555555555555555555544320 1233455666666666666666666666666654
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA-KTADE 461 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~ 461 (557)
. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 266 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 266 I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 2 3345566666666666666666666666666532 22444555555555 34444
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=2.4e-16 Score=159.25 Aligned_cols=347 Identities=16% Similarity=0.140 Sum_probs=171.2
Q ss_pred HhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHH
Q 008708 96 EMDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----GGRYKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 96 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 167 (557)
+..+..|...|.. .+++++|...|++..+.| +..++..|...|.. .+++++|++.|++..+.| ++.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444444444444 455555555555554442 44455555555554 455555555555554432 334
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 008708 168 TYQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQST 239 (557)
Q Consensus 168 ~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 239 (557)
.+..+...|.. .+++++|...|++..+. -+...+..|...|.. .+++++|+..|++..+.| +.
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444 44555555555555431 133444445555544 445555555555554443 12
Q ss_pred HHHHHHhc---c----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 240 VTYNSLMS---F----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKA 308 (557)
Q Consensus 240 ~~~~~ll~---~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 308 (557)
..+..+-. . .++.++|...|+...+.+ +...+..+...|.. .+++++|..+|++..+.+ +...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 11111111 1 344555555555554432 34444555555544 455555555555555432 3344
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 309 YNILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA-----SDMEGAEKFFRRLKQDGFVPNVITY 379 (557)
Q Consensus 309 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (557)
+..+...|.. .++.++|..+|++..+.+ ++..+..+...|... +++++|...|++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 4445555554 555555555555555432 344445555555554 55555555555555543 33444
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 380 GTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 380 ~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
..+...|...| ++++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.| ++..+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 45555555444 4555555555555542 44455555555555 555555555555555533 34445555
Q ss_pred HHHHhh----cCCHHHHHHHHHhcCCC
Q 008708 453 LSLAKT----ADERNEANELLGNFNHP 475 (557)
Q Consensus 453 ~~~~~~----~g~~~~a~~~~~~~~~~ 475 (557)
...|.. .++.++|...+++....
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 555554 55555555555555433
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.1e-18 Score=166.80 Aligned_cols=285 Identities=11% Similarity=-0.025 Sum_probs=207.0
Q ss_pred ChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 59 PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 138 (557)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 138 (557)
..+..+.....+...++++.|.++++.+.+..+ .+...+..++.++.+.|++++|..+++++.+.. +.+..+|..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 334455555666777999999999999988764 456677788999999999999999999998864 44788999999
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 139 EAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 139 ~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
..+...| ++++|...|++.....+. +...+..+...+...|++++|.+.++++++.. +.+...+..+...|...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCSHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHH
Confidence 9999999 999999999999987544 67789999999999999999999999998642 33456777789999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008708 218 GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM 297 (557)
Q Consensus 218 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 297 (557)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 173 ~~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA---------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp TCHHHHHHHHHHHHTTC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC---------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999998887642 235677888888888888888888888887
Q ss_pred HHcCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 298 LDAGV--------RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 298 ~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
.+... +....++..+..+|...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 65310 2223455555555666666666666665555432 22344455555555555555555555555444
Q ss_pred CCCCCCHHHHHHHHHHH
Q 008708 370 DGFVPNVITYGTLIKGY 386 (557)
Q Consensus 370 ~~~~p~~~~~~~l~~~~ 386 (557)
.. +.+...+..+..++
T Consensus 299 ~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 299 LR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp TC-SCCHHHHHHHHHHH
T ss_pred cC-CCchHHHHHHHHHH
Confidence 32 33444444444444
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.8e-16 Score=158.87 Aligned_cols=335 Identities=14% Similarity=0.147 Sum_probs=286.3
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----G 144 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~ 144 (557)
.++++.|.+.++...+.+ ++..+..|...|.. .+++++|.+.|++..+.| +..++..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 578999999999988775 56788899999999 999999999999999875 78888999999988 8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----
Q 008708 145 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK---- 216 (557)
Q Consensus 145 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 216 (557)
+++++|+..|++....| ++..+..+...|.. .+++++|.+.|++..+. .+...+..|...|..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCC
Confidence 89999999999998865 56778888888887 78999999999999862 367888999999998
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH---hc----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 008708 217 AGGYEKARKLFALMAERGVQQSTVTYNSL---MS----FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----AR 285 (557)
Q Consensus 217 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---l~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 285 (557)
.+++++|...|++..+.+. ...+..+ .. ..+++++|...|+...+.+ +...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 8999999999999998753 2222222 21 1578999999999998764 56777888888888 89
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CH
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS---DM 357 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~ 357 (557)
++++|+.+|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|...| ++
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 9999999999998764 567788888888887 89999999999999865 6678888888888867 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDS 429 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 429 (557)
++|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..+...|.+ .+++++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999874 67888899999998 899999999999999865 57788889998988 899999
Q ss_pred HHHHHHHHHhCC
Q 008708 430 AVVWYKEMESCG 441 (557)
Q Consensus 430 A~~~~~~m~~~~ 441 (557)
|..+|++..+.+
T Consensus 422 A~~~~~~A~~~~ 433 (490)
T 2xm6_A 422 AWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 999999999865
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=9.2e-19 Score=170.19 Aligned_cols=288 Identities=8% Similarity=-0.024 Sum_probs=186.6
Q ss_pred cCChHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 008708 144 GGRYKNAEA-IFRRMQSSGPR---PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 219 (557)
Q Consensus 144 ~g~~~~A~~-~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 219 (557)
.|++++|++ .+++.....+. .+...+..+...+...|++++|...|+++++.. +.+..++..++.++...|+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCcC
Confidence 355666665 55544332211 123345555566666666666666666665421 3345556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 220 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 220 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
+++|+..|+++.+.. +.+..++..+...|...|++++|...++++.+
T Consensus 114 ~~~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 114 ELLAISALRRCLELK---------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666555431 12444555566666666666666666666655
Q ss_pred cCCCCCHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 300 AGVRPTHKAYN---------------ILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 300 ~~~~~~~~~~~---------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 363 (557)
... .+...+. ..+..+...|++++|...|+++.+..... +..++..+...|...|++++|...
T Consensus 161 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 421 1111111 02333337888888888888887653221 578888888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 443 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 443 (557)
++++.... +.+..++..++.++...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...++++.+.. +
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 316 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-R 316 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 98888764 5567888888999999999999999999888753 4457888888889999999999999998887621 1
Q ss_pred CC-----------HHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 444 PD-----------QKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 444 p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
.+ ..+|..+..++...|+.++|..+.++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 12 578888889999999999998887653
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=8.9e-19 Score=170.15 Aligned_cols=266 Identities=8% Similarity=-0.044 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS 244 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 244 (557)
+...+..+...+.+.|++++|..+|+++++.. +.+..++..++.+|...|++++|+..|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---------- 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------
Confidence 34456677777777888888888888777532 4456777778888888888888887777776541
Q ss_pred HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHH
Q 008708 245 LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-----------HKAYNILL 313 (557)
Q Consensus 245 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~li 313 (557)
+.+..++..+..+|...|++++|+..|+++.+.. |+ ...+..+.
T Consensus 130 -----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~ 184 (365)
T 4eqf_A 130 -----------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMS 184 (365)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------
T ss_pred -----------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHH
Confidence 2246667777777888888888888888776642 21 22344557
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
..+...|++++|..+|+++.+.... ++..++..+...|...|++++|+..|+++.+.. +.+..+|..++.+|...|++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 7888889999999999988876422 168888999999999999999999999988764 66788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCC--------CHHHHHHHHHHHhhcCC
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG---FPP--------DQKAKNILLSLAKTADE 461 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p--------~~~~~~~l~~~~~~~g~ 461 (557)
++|...|+++.+.. +.+..+|..+..+|.+.|++++|...++++++.. ..+ +...|..+..++...|+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 99999999998753 4458889999999999999999999999987621 011 24678899999999999
Q ss_pred HHHHHHHHHh
Q 008708 462 RNEANELLGN 471 (557)
Q Consensus 462 ~~~a~~~~~~ 471 (557)
.+.+..+.++
T Consensus 343 ~~~a~~~~~~ 352 (365)
T 4eqf_A 343 PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=6.2e-18 Score=164.29 Aligned_cols=307 Identities=12% Similarity=0.008 Sum_probs=216.4
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 106 YGKQGDFNKAEK-VLSFMNKKGYA-P--SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 106 ~~~~g~~~~A~~-~~~~~~~~g~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+...|++++|.+ .|++....... | +...+..+...+...|++++|+..|+++.+..+. +..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 344577888887 77765543211 1 3456778888888888899999988888887543 77788888888888899
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~ 261 (557)
+++|...|+++++.. +.+..++..++.+|...|++++|...|+++......... .+..+ +...
T Consensus 114 ~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~----~~~~-------- 176 (368)
T 1fch_A 114 ELLAISALRRCLELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPA----EEGA-------- 176 (368)
T ss_dssp HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC------------------
T ss_pred HHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHH----HHHh--------
Confidence 999999988887642 456778888888899999999999999888875422111 11000 0000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 262 MQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD 340 (557)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 340 (557)
. ...+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|...|+++.... +.+
T Consensus 177 --~-~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 177 --G-GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred --h-hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 0000 11122233333 8889999999999988764221 57888888999999999999999999887653 446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----------
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---------- 410 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---------- 410 (557)
..++..+...+...|++++|...|+++.+.. +.+..++..++.+|.+.|++++|...|+++.+.. +.+
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccch
Confidence 7888999999999999999999999988764 5678889999999999999999999999887632 112
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 411 -QTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 411 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..+|..+..+|...|++++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6789999999999999999988876543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.4e-15 Score=155.41 Aligned_cols=393 Identities=11% Similarity=0.100 Sum_probs=288.9
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY-GRGGRYK 148 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~ 148 (557)
+...++.+.|..+++.+.+.. +.+...|..++..+.+.|++++|..+|+++.... |++..|...+... ...|+.+
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchh
Confidence 455688999999999998775 4577889999999999999999999999999873 6888888887543 4467777
Q ss_pred HHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 008708 149 NAEA----IFRRMQS-SGPR-PSALTYQIILKLFVE---------ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 213 (557)
Q Consensus 149 ~A~~----~~~~m~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (557)
.|.+ +|++... .|.. ++...|...+....+ .|+++.|..+|+++++. +..+....|......
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~ 174 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKY 174 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHH
Confidence 6655 7776654 3433 356777777776554 68899999999999842 111112344333221
Q ss_pred H-------------HHcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHhcc-------cCCH----
Q 008708 214 Y-------------KKAGGYEKARKLFALMA------ERG---VQQS--------TVTYNSLMSF-------ETNY---- 252 (557)
Q Consensus 214 ~-------------~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~ll~~-------~~~~---- 252 (557)
. ...+++..|..++.... +.. +.|+ ...|...+.. .++.
T Consensus 175 e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~ 254 (530)
T 2ooe_A 175 EEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLIT 254 (530)
T ss_dssp HHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHH
T ss_pred HHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHH
Confidence 1 12356777877776632 211 2333 2344444432 1222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYGK-------ARREE-------EALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
.++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46778898888763 3367888888888875 78876 899999999863234568899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSP-DI-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG-YAKVNNLEKM 395 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a 395 (557)
.|++++|..+|+++.+. .| +. ..|...+..+.+.|++++|.++|++..+.. +.+...|...+.. +...|++++|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999985 34 33 589999999999999999999999998863 3333444333322 3468999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPD--QKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
..+|++.++.. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998752 3468899999999999999999999999999853 2332 347888888889999999999999887
Q ss_pred CC
Q 008708 473 NH 474 (557)
Q Consensus 473 ~~ 474 (557)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.2e-17 Score=162.28 Aligned_cols=276 Identities=10% Similarity=-0.026 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
+...|..+...+.+.|++++|+..|+++.+..+. +..++..+..++...|++++|+..|+++++.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ----PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHH
Confidence 3445677777777777777777777777765433 67777777888888888888888888877532 345677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVT-YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 288 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (557)
++.+|...|++++|+..|+++.+.. |+... +.. .......+..+...+...|+++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKN----------------------KKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------CCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhh----------------------hccchHHHHHHHHHHhhhhhHH
Confidence 8888888888888888888877642 11000 000 0012334566778889999999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 289 EALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 289 ~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
+|+..|+++.+.... ++..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886422 168899999999999999999999999988764 457889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CC--------cCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG---IK--------PNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
.+.. +.+..++..+..+|.+.|++++|...|+++.+.. .. .+..+|..+..++...|+.+.+..+.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8864 5568899999999999999999999999988631 00 1257899999999999999998887765
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=1.7e-15 Score=154.77 Aligned_cols=374 Identities=12% Similarity=0.108 Sum_probs=275.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|++++... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 46778888888 478999999999999999873 5578899999999999999999999999998864 5777777776
Q ss_pred HHH-HHcCCHHHHHH----HHHHhHhccCCCC-CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCC
Q 008708 174 KLF-VEANKFKEAEE----VFMTLLDEEKSPL-KPDQKMFHMMIYMYKK---------AGGYEKARKLFALMAERGVQQS 238 (557)
Q Consensus 174 ~~~-~~~g~~~~A~~----~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 238 (557)
... ...|+.+.|.+ +|+.++.. .+. +++...|...+..... .|+++.|..+|++..+....+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~--~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDK--IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHH--TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 533 35577776655 77777642 122 2456788888877665 7899999999999988311111
Q ss_pred HHHHHHHhc----------------ccCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc-
Q 008708 239 TVTYNSLMS----------------FETNYKEVSKIYDQMQ------RAG---LQPD--------VVSYALLINAYGKA- 284 (557)
Q Consensus 239 ~~~~~~ll~----------------~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~- 284 (557)
...|..... ..+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 233332211 1345666766666532 111 2343 24555555433322
Q ss_pred ---CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCCHHH
Q 008708 285 ---RRE----EEALAVFEEMLDAGVRPTHKAYNILLDAFAI-------SGMVD-------QARTVFKCMRRDRCSPDICS 343 (557)
Q Consensus 285 ---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~ 343 (557)
++. ..+..+|++++... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 222 47788999988763 4577888888888776 68877 99999999986333557889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-H
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA-Y 421 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~ 421 (557)
|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 9999999999999999999999999863 2233 589999999999999999999999999752 2233444333322 3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
...|++++|..+|+..++.. +.++..|..++..+.+.|+.++|+.++++.....+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 46899999999999998742 44678899999999999999999999999875543
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=8.3e-17 Score=153.40 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (557)
+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 555666677777777666543 3355566666666666666666666666665432 23455566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCChhH
Q 008708 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-----------NQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~ 429 (557)
...++++.+.. +.+..++..+..+|...|++++|.+.++++.+..... +...|..+..++.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 66666655543 3345556666666666666666666666655431110 24455555555556666666
Q ss_pred HHHHHHH
Q 008708 430 AVVWYKE 436 (557)
Q Consensus 430 A~~~~~~ 436 (557)
|..++++
T Consensus 305 A~~~~~~ 311 (327)
T 3cv0_A 305 VELTYAQ 311 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 5555543
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.8e-16 Score=151.03 Aligned_cols=153 Identities=11% Similarity=0.077 Sum_probs=135.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 316 FAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 395 (557)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 395 (557)
+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 677889999999999998764 4478899999999999999999999999998864 56788999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhhcCCH
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-------------QKAKNILLSLAKTADER 462 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~ 462 (557)
...++++.+.. +.+...+..+..++...|++++|...++++.+. .|+ ...+..+..++...|+.
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 99999998753 456889999999999999999999999999873 344 57888999999999999
Q ss_pred HHHHHHHHhcC
Q 008708 463 NEANELLGNFN 473 (557)
Q Consensus 463 ~~a~~~~~~~~ 473 (557)
++|..++++..
T Consensus 303 ~~A~~~~~~~l 313 (327)
T 3cv0_A 303 DLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTCCS
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.3e-16 Score=148.90 Aligned_cols=251 Identities=10% Similarity=0.104 Sum_probs=137.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 220 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (557)
....|+++.|+..+++.....+.+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCCcH
Confidence 344566666666555543322221122334445566666666665553322 1234445555555555555666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 221 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 221 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
++|++.++++...+..|+ +...+..+..++...|++++|+..+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~-------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~---- 126 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVT-------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ---- 126 (291)
T ss_dssp HHHHHHHHHHHHSCCCCS-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT----
T ss_pred HHHHHHHHHHHhcccCCC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC----
Confidence 666666555554321111 333444555556666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY---TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 377 (557)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (557)
+.+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~ 201 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLL 201 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHH
Confidence 3455556666666666666666666666665542 222111 112222333466777777777766653 55666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS-AVVWYKEMES 439 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 439 (557)
.++.+..++.+.|++++|...|+++.+.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67777777777777777777777766542 3356666667766667777654 4566666665
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=9e-16 Score=154.47 Aligned_cols=364 Identities=11% Similarity=0.004 Sum_probs=245.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK--------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS----- 160 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 160 (557)
.....|+.|..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987542 12335778999999999999999999999887642
Q ss_pred C--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHc
Q 008708 161 G--PRPSALTYQIILKLFVEA--NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM---YKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 161 ~--~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~ 233 (557)
+ ......++.....++... +++++|+..|+++++.. |.+...+..+..+ +...++.++|++.+++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 112456676666666554 47999999999998753 3445566655554 34567888999999998876
Q ss_pred CCCCCHHHHHHHh-------cccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 234 GVQQSTVTYNSLM-------SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 306 (557)
Q Consensus 234 ~~~~~~~~~~~ll-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 306 (557)
... +...+..+. ...+++++|.+.++......+ .+..++..+...|...|++++|+..+++..+.. +.+.
T Consensus 205 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 205 NPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp CSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 432 233332221 124678899999999887653 367888999999999999999999999998864 4456
Q ss_pred HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 307 KAYNILLDAFAIS-------------------GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 307 ~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
.++..+..+|... +.++.|...+++..... +.+..++..+...|...|++++|+..|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 6777776665432 23567777787776543 334566788889999999999999999998
Q ss_pred HhCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 008708 368 KQDGFVPNVI--TYGTLIK-GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 444 (557)
Q Consensus 368 ~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 444 (557)
.+....|... .+..+.. .....|++++|+..|++.++. .|+....... ...+..+++..++.. +.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GA 428 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CC
Confidence 8764332221 2233332 234678999999999998874 4554332222 233455566665533 55
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 445 DQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
+..++..+..++...|++++|.+.+++..+.++
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC--------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 678899999999999999999999999886554
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=2.9e-17 Score=156.55 Aligned_cols=283 Identities=12% Similarity=0.140 Sum_probs=106.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 187 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 187 (557)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455666666666662 2236666666666666666666666442 355566666666666666666666
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHH
Q 008708 188 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQR 264 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~ 264 (557)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+... .|++++|...|..+
T Consensus 83 yl~~ark~-----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK-----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh-----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 66555421 2335556666666666666666665553 1333344433332 24444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 265 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 24677777777777777777777776 26677777777777777777775544332 2233444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCc------CHHHHHHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKP------NQTIFTTI 417 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p------~~~~~~~l 417 (557)
..++..|.+.|++++|..+++...... +-....|+-|..+|++- ++++.++.++.... .+++| +...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 457777777777777777777776654 55566677776666653 23333333322221 12333 34456677
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 008708 418 MDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..|...++++.|.. .|.+
T Consensus 289 ~~ly~~~~e~d~A~~---tm~~ 307 (449)
T 1b89_A 289 VFLYDKYEEYDNAII---TMMN 307 (449)
T ss_dssp HHHHHHTTCHHHHHH---HHHH
T ss_pred HHHHHhhchHHHHHH---HHHh
Confidence 777777777776654 4555
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.3e-15 Score=140.39 Aligned_cols=252 Identities=12% Similarity=0.094 Sum_probs=163.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+-....|++..|+..++...... |+ ......+.++|...|+++.|+..++. . .+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 34455677777777776654432 22 23445566777777777777765543 1 34456666777777777777
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~ 261 (557)
.++|++.+++++... ..+.+...+..+...+...|++++|+..+++
T Consensus 81 ~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------------------------- 126 (291)
T 3mkr_A 81 RDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------------------------- 126 (291)
T ss_dssp HHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------------------------------
Confidence 777777777776421 1233555666677777777777777777644
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008708 262 MQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY---NILLDAFAISGMVDQARTVFKCMRRDRCS 338 (557)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 338 (557)
+.+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+
T Consensus 127 ------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p 197 (291)
T 3mkr_A 127 ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CS 197 (291)
T ss_dssp ------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SC
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CC
Confidence 1245566667777777777777777777776653 332211 11223333447777777777777765 24
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 008708 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK-MMEIYDKMRVN 405 (557)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 405 (557)
.++..++.+..++.+.|++++|...|+++.... +.+..++..++..+...|+.++ +.++++++.+.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 567777777777778888888888887777654 5567777777777777777765 46777777764
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=172.05 Aligned_cols=119 Identities=11% Similarity=0.193 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQ---DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
..|||++|.+|++.|++++|.++|.+|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45677777777777777777777766653 367788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 008708 418 MDAYGKNKDF-DSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 459 (557)
Q Consensus 418 ~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 459 (557)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888887764 67778888888778888888887777655544
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=170.11 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEML---DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 346 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 346 (557)
-..||+++|++|++.|++++|..+|.+|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776654 346677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 347 MLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 347 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 46677777777777777777777777765544
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=5.2e-13 Score=141.99 Aligned_cols=315 Identities=13% Similarity=0.138 Sum_probs=235.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 4467778888999999999988631 3333444433 677889998888864 2577888999999999
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVS 256 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~ 256 (557)
|++++|++.|.+. .|...|..++.++.+.|++++|.++|....+....+...+. +..+ .+++++..
T Consensus 1119 G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAELE 1187 (1630)
T ss_pred CCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHHHH
Confidence 9999999999665 46778888999999999999999999888776533323332 2222 24555433
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
.. .+ .++...|..+...|...|++++|..+|... ..|..+..+|++.|+++.|.+.+++..
T Consensus 1188 ~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 22 22 346677778999999999999999999985 378899999999999999999998773
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+... +-....|+-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 678999999999999999988887654 34566777899999999999999999998887543 334566766
Q ss_pred HHHHHHhc--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 417 IMDAYGKN--KDFDSAVVWYKEMESCGFPP------DQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 417 l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
+..+|.+. ++..++.++|..-.. ++| +...|..+.-.|.+.|+++.|...+
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 77766653 445555555553322 333 3467888889999999999998544
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=1.5e-15 Score=144.73 Aligned_cols=279 Identities=11% Similarity=0.109 Sum_probs=127.0
Q ss_pred hccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008708 72 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 151 (557)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 151 (557)
..++.+.|.++++.+. .+.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4566788888887772 2458999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 152 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 152 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 987777663 4457888899999999999999887763 366679999999999999999999999976
Q ss_pred HcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 232 ERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA 308 (557)
Q Consensus 232 ~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 308 (557)
..|..+.. ..|++++|.+.++.+ .++.+|..++.+|...|+++.|......+ ...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhh
Confidence 24444444 478999999999988 27899999999999999999996655542 234444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCC------CHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA--SDMEGAEKFFRRLKQDGFVP------NVITYG 380 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~ 380 (557)
...++..|.+.|.+++|..+++...... +.....|+-+.-.|++- ++..+.++.|.. ..+++| +...|.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 5678999999999999999999998665 55667787777777654 344444444431 223333 455688
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~ 398 (557)
.+...|.+.++++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999988764
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=8e-15 Score=130.58 Aligned_cols=201 Identities=17% Similarity=0.078 Sum_probs=163.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
+++...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3566788889999999999999999999998764 4577889999999999999999999999998764 4477889999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 348 LSAYVNA-----------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 348 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
...+... |++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++.+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998875 5678899999999999999999999999999876 68899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 417 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 417 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
+..+|...|++++|+..++++++.. |.+...+..+..++...|++++|...+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999998843 44667888999999999999999999987653
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.7e-14 Score=129.14 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHH
Q 008708 132 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMF 207 (557)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~ 207 (557)
..|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+.++++..+. ..++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHHHHH
Confidence 345555555555555555555555555544 44555555555555555555555555555532110 0111 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..+...+...|++++|...|+++..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5566666666666666666655554
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=5.5e-12 Score=134.26 Aligned_cols=350 Identities=13% Similarity=0.123 Sum_probs=245.4
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 60 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSW-WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 138 (557)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 138 (557)
++.+-.+...+...+.+.+|+++++.+...+. +.-+....+.|+.+..+. +..+..++.++.... + ...+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHH
Confidence 34444455555667777788888877774432 223344555566666655 445555555444321 1 33366
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
..+...|.+++|..+|++.. ........++ -..+++++|.++.+++ .+..+|..++.++...|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCC
Confidence 77788899999999998852 1222223333 2678889999888766 24678889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008708 219 GYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 295 (557)
Q Consensus 219 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 295 (557)
++++|+..|.+. .+...|..+... .|+++++.+.|....+... +....+.++.+|++.+++++...+
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f-- 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF-- 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH--
Confidence 999999999664 355555555543 6889999999988877643 333334588889999888854433
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 296 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 296 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (557)
++ .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+
T Consensus 1190 --I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1190 --IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred --Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 22 456677778899999999999999999875 37889999999999999999999866 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLS 454 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~ 454 (557)
..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+. +.+.. ..|.-+..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELai 1322 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHH
Confidence 688888899999999998888876643 34677788999999999999999999988875 34433 45655665
Q ss_pred HHhh--cCCHHHHHHHHHh
Q 008708 455 LAKT--ADERNEANELLGN 471 (557)
Q Consensus 455 ~~~~--~g~~~~a~~~~~~ 471 (557)
++.+ .++..++.+++..
T Consensus 1323 LyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5554 3455555555543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.3e-14 Score=128.80 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=167.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTY 169 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~~~ 169 (557)
...+..+...+...|++++|...|+++.+.. .+..+|..+..++...|++++|+..+++..+..+. ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567889999999999999999999999886 68899999999999999999999999998775332 12 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 249 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 249 (557)
..+...+...|++++|...|+++++. .|+. ..+.+.|++++|...++++....
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--------------- 135 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE-----HRTA-------DILTKLRNAEKELKKAEAEAYVN--------------- 135 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC---------------
Confidence 89999999999999999999999864 2442 34556677777777777766531
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
+.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|
T Consensus 136 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 136 ------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1134556777777888888888888888877653 345666667777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
++..+.. +.+..++..+...+...|++++|...+++..+
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7666543 33455566666666666666666666666554
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=3.8e-14 Score=126.16 Aligned_cols=200 Identities=15% Similarity=0.065 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 008708 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 207 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (557)
|++...+..+...+.+.|++++|+..|++.++..+. +...+..+..++.+.|++++|+..++++++.. +.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART----PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHH
Confidence 456667777777777888888888888877776443 67777777777788888888888888777532 3456677
Q ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008708 208 HMMIYMYKKA-----------GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYAL 276 (557)
Q Consensus 208 ~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (557)
..+..++... |++++|+..|++..+. . +-+...+..
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------~-P~~~~~~~~ 123 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------------------------------N-PRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------------------------------C-TTCHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------------------------------C-cccHHHHHH
Confidence 7777777666 5555555555555443 1 124556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
+..++...|++++|+..|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 6667777777777777777776655 566666666666777777777777776666542 3345556666666666666
Q ss_pred HHHHHHHHHHHH
Q 008708 357 MEGAEKFFRRLK 368 (557)
Q Consensus 357 ~~~A~~~~~~m~ 368 (557)
+++|...+++..
T Consensus 201 ~~~A~~~~~~~~ 212 (217)
T 2pl2_A 201 AEEAARAAALEH 212 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666665543
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=6.1e-13 Score=133.69 Aligned_cols=313 Identities=12% Similarity=0.028 Sum_probs=225.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC---
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS--------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK--- 197 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--- 197 (557)
.....||.|...+...|++++|++.|++..+. .......+|..+..+|...|++++|...++++++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34678999999999999999999999987542 1223567899999999999999999999998875311
Q ss_pred CC-CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHh------cccCCHHHHHHHHHHHHHCCCC
Q 008708 198 SP-LKPDQKMFHMMIYMYKKA--GGYEKARKLFALMAERGVQQSTVTYNSLM------SFETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 198 ~~-~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~~~a~~~~~~~~~~~~~ 268 (557)
.. ......++..+..++.+. +++++|+..|++..+..+. +...+..+. ...++.++|.+.+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 11 123456777777666665 4699999999999886432 222222221 124667788888888877643
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 269 PDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 269 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
.+..++..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 356666666655554 457789999999988764 5677889999999999999999999999998764 3466677
Q ss_pred HHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 345 TTMLSAYVNA-------------------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 345 ~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..+...|... +.++.|...++...+.. +.+..++..+...|...|++++|...|++.++.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7776665432 33567888888877754 556677888999999999999999999999876
Q ss_pred CCCcCH--HHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 008708 406 GIKPNQ--TIFTTIMD-AYGKNKDFDSAVVWYKEMESCGFPPDQKA 448 (557)
Q Consensus 406 ~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 448 (557)
...|.. ..+..+.. .+...|++++|+..+++.++ +.|+...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~ 407 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSRE 407 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 433322 12333333 34578999999999999988 5666543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.3e-13 Score=127.52 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILK 174 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~ 174 (557)
..+......+...|++++|+..|+++.+.. +.+..++..+..+|...|++++|+..+++....... ....+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445556666667777777777777766653 224446666666677777777777777666653211 12334566666
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.+...|++++|++.|+++++.. +.+..++..+..+|...|++++|+..|++..+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD----TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHcccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 6666666666666666666432 23345566666666666666666666655544
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=2.1e-13 Score=131.51 Aligned_cols=229 Identities=7% Similarity=0.018 Sum_probs=147.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
..|..+..++.+.|++++|++.|++++... +.+..+|+.+..++...|+ +++|+..|++.+...+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 456677777777888888888888877764 3357777888888888886 88888888887776544 67777777777
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 255 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a 255 (557)
+...|++++|+..|+++++.. +.+..+|..+..++...|++++|+..|+++++..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld----P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--------------------- 230 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--------------------- 230 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---------------------
T ss_pred HHHccCHHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------------------
Confidence 777888888888888777543 4566777777777777777777777777776642
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHH
Q 008708 256 SKIYDQMQRAGLQPDVVSYALLINAYGK-ARREEEA-----LAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQART 327 (557)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~ 327 (557)
+-+...|+.+..++.. .|..++| +..|++.+... +-+...|..+..++...| ++++|+.
T Consensus 231 ------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 231 ------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHH
Confidence 2245566666666666 4443555 35565555542 234455555555555555 3555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH
Q 008708 328 VFKCMRRDRCSPDICSYTTMLSAYVNAS---------DMEGAEKFFRRL 367 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 367 (557)
.+.++ + ..+.+...+..++..|.+.| ..++|+++|+++
T Consensus 298 ~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 298 QLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55554 2 22334455555555555542 135555555555
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=5e-13 Score=122.00 Aligned_cols=207 Identities=12% Similarity=0.050 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008708 204 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 283 (557)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (557)
...+..++..+...|++++|...|+++.+.. +.+...+..+...|..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~la~~~~~ 83 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---------------------------------PSSADAHAALAVVFQT 83 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------------------------CChHHHHHHHHHHHHH
Confidence 4567778888888999999998888877641 2356778888889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEK 362 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 362 (557)
.|++++|...++++.+.. +.+...+..+...|...|++++|..+++++...+..| +...+..+...+...|++++|..
T Consensus 84 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988764 4467788888999999999999999999988732334 45678888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 363 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
.++++.+.. +.+...+..++..|...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 238 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL-- 238 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--
Confidence 999988764 5568888899999999999999999999988753 456778888888899999999999999999873
Q ss_pred CCCHHH
Q 008708 443 PPDQKA 448 (557)
Q Consensus 443 ~p~~~~ 448 (557)
.|+...
T Consensus 239 ~p~~~~ 244 (252)
T 2ho1_A 239 YPGSLE 244 (252)
T ss_dssp CTTSHH
T ss_pred CCCCHH
Confidence 454433
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=2.1e-13 Score=125.99 Aligned_cols=249 Identities=16% Similarity=0.102 Sum_probs=153.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
+......+...|++++|+..|+++++.. +.+..++..+..+|...|++++|+..++++.+.. ++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~---------- 69 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NA---------- 69 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CT----------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cc----------
Confidence 3344455566666666666666665422 2233355566666666666666666666655421 00
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
......+|..+...+...|++++|+..|++..+.. +.+..++..+...|...|++++|...
T Consensus 70 ------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 70 ------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 01123445666666777777777777777766643 33456677777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHC
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVN 405 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 405 (557)
|++..+.. +.+...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.
T Consensus 131 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 131 MEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 77776542 3455666666634444458888888888777654 4456777777777777777 77788888777653
Q ss_pred C-CCcC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008708 406 G-IKPN------QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLA 456 (557)
Q Consensus 406 ~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~ 456 (557)
. -.|+ ...|..+...|.+.|++++|...++++.+. .|+ ...+..+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMKL 265 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC---
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhhh
Confidence 1 1122 256777788888888888888888888873 443 44444444433
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=5.4e-12 Score=116.68 Aligned_cols=223 Identities=14% Similarity=0.055 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQSTV 240 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 240 (557)
++.++..+...+...|++++|.+.|++.++ +.+...+..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------
Confidence 344455555555556666666666665553 2233455555555555 566666665555554421
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008708 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 316 (557)
Q Consensus 241 ~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 316 (557)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|
T Consensus 73 -----------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 120 (273)
T 1ouv_A 73 -----------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIY 120 (273)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHH
Confidence 44455556666666 666666666666666643 555666666666
Q ss_pred HH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 317 AI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 317 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH 194 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 66 667777777776666654 45556666666666 677777777777766653 45566667777777
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 008708 389 ----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESC 440 (557)
Q Consensus 389 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 440 (557)
.+++++|...|++..+.+ +...+..+...|.. .+++++|..++++..+.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 777777777777777653 25566666667766 77777777777777664
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.4e-12 Score=119.12 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=198.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008708 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAY 281 (557)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (557)
-+..++..+...|...|++++|+..|++..+. -+...+..+...|
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~~~a~~~lg~~~ 48 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----------------------------------KENSGCFNLGVLY 48 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----------------------------------CCHHHHHHHHHHH
Confidence 35667888888888999999999988877663 2456777888889
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 282 GK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 282 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 49 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 49 YQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 99 999999999999999875 78889999999999 999999999999999875 78899999999999
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--
Q 008708 354 ----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK-- 423 (557)
Q Consensus 354 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 423 (557)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 999999999999999875 67788889999998 999999999999999864 56788889999999
Q ss_pred --cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCCCCC
Q 008708 424 --NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT----ADERNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 424 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 480 (557)
.+++++|..++++..+.+ +...+..+...+.. .+++++|...+++..+.++...
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999854 36778888889998 9999999999999876665443
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.9e-14 Score=131.16 Aligned_cols=189 Identities=13% Similarity=0.002 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
.++..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 334444444444444444444444444331 1223344444444444444444444444444321 1211222222223
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCChh
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK---PNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~ 428 (557)
...|++++|...+++..... +++...+. ++..+...++.++|...++++.+.... .+...+..+..+|.+.|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 33455555555554444332 22222222 344444445555555555554432100 01345555556666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
+|...++++.+. .|+. +.....++...|++++|.+.+
T Consensus 233 ~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 666666666552 2322 111233444555555555443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=3.6e-13 Score=129.87 Aligned_cols=248 Identities=10% Similarity=0.075 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
..+|+.+...+...|++++|+..+++.+...+. +..+|..+..++...|+ +++|+..|++++... +.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----CCCHHHHHH
Confidence 567888888888888999999999888886544 67788888888888886 888888888888643 456778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 289 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (557)
+..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld---------------------------------P~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD---------------------------------AKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC---------------------------------ccCHHHHHHHHHHHHHcCChHH
Confidence 8888888888888888888877642 2366778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 008708 290 ALAVFEEMLDAGVRPTHKAYNILLDAFAI-SGMVDQA-----RTVFKCMRRDRCSPDICSYTTMLSAYVNAS--DMEGAE 361 (557)
Q Consensus 290 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~ 361 (557)
|+..|+++++.. +.+...|+.+..++.. .|..++| +..|++.+... +-+...|+.+...+...| ++++|+
T Consensus 219 Al~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 888888888764 3467778888888877 5554666 46666665543 335566666666666666 466777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHH
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVN---------NLEKMMEIYDKM-RVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~ 421 (557)
+.+.++ +. .+.+...+..++.+|.+.| .+++|.++|+++ .+.. +.....|..+...+
T Consensus 297 ~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 297 NQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 777666 32 2455666666777766653 246677777776 4432 22344454444443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=8.8e-13 Score=117.83 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=143.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008708 203 DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 282 (557)
Q Consensus 203 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (557)
+..++..++..+...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~ 53 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------------------------------PKNELAWLVRAEIYQ 53 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------------------ccchHHHHHHHHHHH
Confidence 45566777777777778777777777766541 224556777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008708 283 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-GMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 360 (557)
..|++++|...++++.+.. +.+..++..+...+... |++++|...++++.+.+..| +...+..+...+...|++++|
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888777653 34566777777777788 88888888888777632223 256677777778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
...++++.+.. +.+...+..++.++...|++++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888777653 4457777778888888888888888888877643 3 4566677777777778888888888877765
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=1.6e-13 Score=136.53 Aligned_cols=371 Identities=14% Similarity=0.088 Sum_probs=235.7
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF---NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 145 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 145 (557)
.+...++++.|.+.++.+.+.+ ++..+..|..+|...|+. ++|.+.|++..+. +...+..+...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 3455688999999999988775 345566788888888888 8999999988854 6667777777555555
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 146 -----RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE---AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 146 -----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
++++|+..|++..+.|... .+..+...|...+..+. +.+.+....+. .+......|...|...
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYRTQ 154 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHcC
Confidence 7889999999998876543 66677777777765444 44444444321 2345677788888888
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHH-HHHHHhcccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCH
Q 008708 218 GGYEKARKLFALMAERG--VQQSTV-TYNSLMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA----RRE 287 (557)
Q Consensus 218 g~~~~A~~~~~~~~~~~--~~~~~~-~~~~ll~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~ 287 (557)
+.++++......+.+.- ..|+.. ....+....| +.++|...|+.....|. ++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 85555444433332211 123311 1111222356 78889999999888874 3566556777777555 689
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDA-F--AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-----DMEG 359 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 359 (557)
++|+.+|++.. . .+...+..|... | ...+++++|..+|++..+.+ ++..+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999887 3 355666677766 4 46889999999999988876 7778888888887 55 8999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHH
Q 008708 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAV 431 (557)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 431 (557)
|...|++.. +-+...+..|...|.. ..++++|..+|++..+.| +......+...|.. ..++.+|.
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999877 3467778888877776 348999999999998876 33445556666653 46889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 432 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.+|+...+.| .++.......+......++..+|..+.++..
T Consensus 379 ~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 379 VFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999998876 3333333233333344567778888887655
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.8e-13 Score=124.15 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008708 204 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 283 (557)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (557)
...+..++..+...|++++|...|+++.+. .+.+...+..+...+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~ 69 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------------------------------NKEDAIPYINFANLLSS 69 (243)
T ss_dssp -------------------CCTTHHHHHTT---------------------------------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------------------CcccHHHHHHHHHHHHH
Confidence 345556666666677777777766666553 12245666677777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (557)
.|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 70 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 70 VNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 777777777777776653 3456677777777777778888877777776643 34566777777788888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 443 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 443 (557)
++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.. +
T Consensus 148 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 224 (243)
T 2q7f_A 148 LQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-P 224 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-c
Confidence 88877653 4567778888888888888888888888877653 3457778888888888888888888888887732 2
Q ss_pred CCHHHHHHH
Q 008708 444 PDQKAKNIL 452 (557)
Q Consensus 444 p~~~~~~~l 452 (557)
.+...+..+
T Consensus 225 ~~~~~~~~~ 233 (243)
T 2q7f_A 225 DHMLALHAK 233 (243)
T ss_dssp TCHHHHHHH
T ss_pred chHHHHHHH
Confidence 233444433
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=3.9e-13 Score=122.73 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4668888999999999999999999998864 4578889999999999999999999999998764 4478889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
|...|++++|.++++++...+..| +...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732334 56788899999999999999999999998763 4468889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 430 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
|..+++++.+.. +.+...+..+...+...|+.++|.+.++++.+..+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999998743 55677888889999999999999999998865443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1e-13 Score=128.31 Aligned_cols=121 Identities=11% Similarity=-0.025 Sum_probs=73.4
Q ss_pred hcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGY---APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE 184 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 184 (557)
..|++++|+..|+++.+... +.+..+|..+...+...|++++|+..|+++.+..+. +..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 34566666666666665421 113455666666666666666666666666655332 55666666666666666666
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 185 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
|...|+++++.. +.+..++..++.+|...|++++|...|+++.+.
T Consensus 96 A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 96 AYEAFDSVLELD----PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHC----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666432 234456666666666666666666666666553
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=3.1e-13 Score=134.40 Aligned_cols=332 Identities=10% Similarity=0.040 Sum_probs=184.6
Q ss_pred HhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccch---HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-----
Q 008708 39 EEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW---NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQG----- 110 (557)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 110 (557)
.+..+|...|+..... +..+.-..++.+. ...++. ++|.+.|+.+.+. ++..+..|...+...|
T Consensus 17 g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y--~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL-GYSEAQVGLADIQ--VGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTGGGTCC-----------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHH--HccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCc
Confidence 4556777777643333 2222222222222 223444 6777777666533 3455666666555554
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---
Q 008708 111 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN---AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE--- 184 (557)
Q Consensus 111 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~--- 184 (557)
++++|...|++..+.|. ..++..|...|...+..++ +.+.+......| ++.....+...|...+.+++
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 66778888888777652 2366667777766554333 344444443333 23455566666666664443
Q ss_pred -HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHH--HHhcc----cCCHHH
Q 008708 185 -AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG---GYEKARKLFALMAERGVQQSTVTYN--SLMSF----ETNYKE 254 (557)
Q Consensus 185 -A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~----~~~~~~ 254 (557)
+..++.... .+ .| ..+..|..+|...| +.++|+..|++..+.|.......++ .+... .+++++
T Consensus 163 ~a~~~~~~a~----~~-~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 163 DVERICKAAL----NT-TD--ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHT----TT-CT--THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHH----cC-CH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 333444332 12 22 26777777777777 7778888888877776544432122 22221 257778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINA-Y--GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG-----MVDQAR 326 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~ 326 (557)
|...|+... . -+...+..+... | ...+++++|+.+|++..+.| +...+..|...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 888887776 3 245566666665 3 45778888888888877755 5666667777666 44 788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEI 398 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 398 (557)
.+|++.. . -++..+..+...|.. ..++++|...|++..+.| . ......|...|.. ..+.++|..+
T Consensus 308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-Q--NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-C--TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-h--HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 8887766 3 366666777766665 337888888888877765 2 2344455555553 3467777777
Q ss_pred HHHHHHCC
Q 008708 399 YDKMRVNG 406 (557)
Q Consensus 399 ~~~m~~~~ 406 (557)
|+...+.|
T Consensus 381 ~~~A~~~g 388 (452)
T 3e4b_A 381 SQLAKAQD 388 (452)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
Confidence 77777665
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=8.6e-13 Score=117.90 Aligned_cols=202 Identities=12% Similarity=0.040 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678889999999999999999999998864 4567889999999999999999999999998754 447788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 350 AYVNA-SDMEGAEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 350 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
.+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998832233 36788999999999999999999999998753 44588899999999999999
Q ss_pred hHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 428 DSAVVWYKEMESCGFP-PDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 428 ~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
++|..+++++.+.. + .+...+..+...+...|+.++|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998743 4 56677888888889999999999999887643
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1.5e-13 Score=124.71 Aligned_cols=205 Identities=11% Similarity=0.067 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 348 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 348 (557)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667888889999999999999999998753 4578889999999999999999999999998764 44788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998865 6678899999999999999999999999998753 456889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+|...++++.+.. +.+..++..+..++...|++++|...++++.+..+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 9999999998853 456788999999999999999999999998755443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.3e-13 Score=135.57 Aligned_cols=281 Identities=15% Similarity=0.080 Sum_probs=181.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRP- 164 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~- 164 (557)
.....+..+...+.+.|++++|...|+++.+.+ +.+ ..+|..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445667788899999999999999999998874 223 357888999999999999999999886542 2121
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC--CCCHHHHHHHHHHHHHcCC--------------------HHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL--KPDQKMFHMMIYMYKKAGG--------------------YEK 222 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~--------------------~~~ 222 (557)
...++..+...+...|++++|...++++++...... .....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677888899999999999999998875321100 1113477888888999998 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008708 223 ARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP-DVVSYALLINAYGKARREEEALAVFEEMLDAG 301 (557)
Q Consensus 223 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 301 (557)
|...+++.... +.. .+..+ ...++..+...|...|++++|...+++..+..
T Consensus 166 A~~~~~~al~~-------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL-------------------------VTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH-------------------------HHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------HHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 77766555431 111 11111 23467778888888899999988888876421
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 302 V-RPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 302 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (557)
. .++ ..++..+...|...|++++|...+++...... .++ ..++..+...|...|++++|...+++.....
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 22566667777777777777777776553210 001 3345555666666666666666666554321
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 372 F-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 372 ~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
. .++ ..++..+...|...|++++|...+++..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 011 3345555555556666666666655544
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=3.6e-13 Score=132.34 Aligned_cols=307 Identities=15% Similarity=0.115 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CC
Q 008708 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LK 201 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~ 201 (557)
.+....+......+...|++++|+..|++....++. + ..++..+...+...|++++|...+++++.... .+ .+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456777888889999999999999999999886443 3 35778888999999999999999998765311 11 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008708 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAY 281 (557)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (557)
....++..+...|...|++++|...+++..+. ..... .......++..+...|
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------------SRELN--DKVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HHhcc--cccchHHHHHHHHHHH
Confidence 22457888899999999999999999877653 11100 0001244677888889
Q ss_pred HhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 282 GKARR--------------------EEEALAVFEEMLDA----GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 282 ~~~g~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
...|+ +++|...+.+..+. +..+ ...++..+...|...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 99999998887542 1111 23468888999999999999999999876431
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 008708 337 C-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN- 405 (557)
Q Consensus 337 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~- 405 (557)
. .++ ..++..+...|...|++++|...+++...... .++ ..++..+...|...|++++|...+++..+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 112 34788889999999999999999998865310 111 567889999999999999999999998753
Q ss_pred ---CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCCH
Q 008708 406 ---GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAKNILLSLAKTADER 462 (557)
Q Consensus 406 ---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~ 462 (557)
+-.+ ...++..+..+|...|++++|...+++..+ .+..+. ..++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 156788889999999999999999998865 221221 24566666777766655
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=8.2e-13 Score=130.13 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSS----G-PRPSAL 167 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~ 167 (557)
..+..+...+...|++++|...|+++.+.+ +.+. .+|..+...|...|++++|+..+++.... + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345567888999999999999999998874 2233 57888999999999999999999987653 1 122346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCC--CCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDEEKS--PLKPDQKMFHMMIYMYKKAGG-----------------YEKARKLFA 228 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 228 (557)
++..+...|...|++++|...++++++.... ..+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888999999999999999988753110 011234578888899999999 677766665
Q ss_pred HHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--
Q 008708 229 LMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR-PT-- 305 (557)
Q Consensus 229 ~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-- 305 (557)
+..+ +..... .......++..+...|...|++++|...+++..+.... ++
T Consensus 208 ~al~-------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 208 ENLK-------------------------LMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHH-------------------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHH-------------------------HHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 5443 122110 00112346777888888888888888888877542100 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH
Q 008708 306 --HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTL 382 (557)
Q Consensus 306 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l 382 (557)
..++..+...|...|++++|...+++...... ..+. .....++..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV-------------------------------ELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHH
Confidence 12445555555555555555555554432100 0000 0012344555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVN----G-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
...|...|++++|...+++..+. + ......++..+..+|...|++++|..++++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555666555555555431 1 011134555666666666666666666666655
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.3e-12 Score=128.60 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhccC--CCCCCCH
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA----LTYQIILKLFVEANKFKEAEEVFMTLLDEEK--SPLKPDQ 204 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 204 (557)
...+..+...+...|++++|+..|+++.+.++. +. .++..+...+...|++++|...++++++... ...+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556778889999999999999999886443 33 4788888999999999999999999875310 1112334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
.++..+...|...|++++|...+++..+. +.... .......++..+...|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL-------------------------ARQLG--DRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHHhh--chHHHHHHHHHHHHHHHHc
Confidence 67888999999999999999999877652 11110 0011244677788888888
Q ss_pred CC-----------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 285 RR-----------------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 285 g~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
|+ +++|+..+.+..+. ..... .......++..+
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~--~~~~~~~~~~~l 229 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLG--DRGAQGRACGNL 229 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHT--CHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcC--CHHHHHHHHHHH
Confidence 88 67776666655331 11110 000012244444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIK-PNQTIFTTI 417 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~l 417 (557)
...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+. +.. ....++..+
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555433100 012 346777888888889999998888887742 101 125678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESC----GFPP-DQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
..+|...|++++|..++++..+. +..+ ...++..+..++...|++++|...+++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988652 1111 235778888999999999999999988653
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=5.2e-12 Score=109.06 Aligned_cols=171 Identities=16% Similarity=0.099 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...|..+...|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56678888888888888888888888887764 4467778888888888888888888888877653 345667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
.+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888877764 5567788888888888888888888888887753 4457788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCH
Q 008708 430 AVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~ 446 (557)
|+..|+++++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 8888888877 34543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=7.1e-13 Score=126.29 Aligned_cols=277 Identities=14% Similarity=0.115 Sum_probs=154.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHHH
Q 008708 134 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKMF 207 (557)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~~ 207 (557)
+......+...|++++|+..|+++.+..+. + ...+..+...+...|++++|.+.++++++... .+ .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344445555666666666666666554322 2 24455556666666666666666666543210 00 11124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL-QPDVVSYALLINAYGKARR 286 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 286 (557)
..+...|...|++++|...+++..+.. . ..+. .....++..+...|...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------~---~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDIS-------------------------R---ELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------H---HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-------------------------H---HhcCchHHHHHHHHHHHHHHHcCc
Confidence 778888888888888888887765420 0 0000 0013356677777777777
Q ss_pred --------------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC
Q 008708 287 --------------------EEEALAVFEEMLDA----GVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RC 337 (557)
Q Consensus 287 --------------------~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 337 (557)
+++|...+++.... +.. ....++..+...+...|++++|...+++..+. +.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 77777777765432 111 11235666677777777777777777766532 10
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC
Q 008708 338 -SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GI 407 (557)
Q Consensus 338 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~ 407 (557)
.....++..+...+...|++++|...+++...... .++ ..++..+...|...|++++|...++++.+. +-
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 00122555666666666777777666666543210 011 345556666666666666666666665532 10
Q ss_pred -CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 408 -KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 408 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.....++..+..+|.+.|++++|...++++.+
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 01133455566666666666666666666654
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=2.4e-10 Score=117.61 Aligned_cols=426 Identities=11% Similarity=0.083 Sum_probs=286.2
Q ss_pred hHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC---hhHHHHHH
Q 008708 43 SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGD---FNKAEKVL 119 (557)
Q Consensus 43 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 119 (557)
+.+..|+.. ....|..-......+..+...+..+.+..+++.+...- +.....|...+..-.+.|. ++.+.++|
T Consensus 50 d~i~~lE~~-l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDM-IEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHH-HHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 445555533 34455566666666666666678888889998888774 4667778888888888888 99999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHH---------
Q 008708 120 SFMNKKG-YAPSVVSHTALMEAYGRGGRY--------KNAEAIFRRMQS-SGP-RP-SALTYQIILKLFVE--------- 178 (557)
Q Consensus 120 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~ll~~~~~--------- 178 (557)
++..... .+|++..|..-+....+.+.. +...++|+..+. .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988763 137888888888776665543 334467776554 455 44 45677777766542
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC-------
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG-------------GYEKARKLFALMAER--GVQ------- 236 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------------~~~~A~~~~~~~~~~--~~~------- 236 (557)
.++.+.+.++|++++.. +...-..+|......-...+ +++.|...+..+... ++.
T Consensus 207 q~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 34567788889888732 11122334433332211111 233344444443211 111
Q ss_pred --------C-----C---HHHHHHHhccc---C-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008708 237 --------Q-----S---TVTYNSLMSFE---T-------NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 290 (557)
Q Consensus 237 --------~-----~---~~~~~~ll~~~---~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 290 (557)
| + ...|...+... + ..+.+..+|++..... +-+...|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 12333333321 1 1234566788887763 33778888888888889999999
Q ss_pred H-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHH
Q 008708 291 L-AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR---------CSPD------------ICSYTTML 348 (557)
Q Consensus 291 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li 348 (557)
. .+|++.... ++.+...|...+....+.|+++.|..+|+.+.... ..|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 999999875 45667778888888999999999999999987631 0131 23678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 349 SAYVNASDMEGAEKFFRRLKQD-GFVPNVITYGTLIKGYAKV-NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
....+.|+.+.|..+|.++.+. + .+....|...+..-.+. ++.+.|..+|+..++. ++.+...|..++......|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 8888899999999999999876 3 22334444333333344 4589999999999876 45567778888888888999
Q ss_pred hhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 427 FDSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
.+.|..+|+..+.....+ ....|...+..-.+.|+.+.+..+.+++.+..+.
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998853222 2357888888889999999999999998754443
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.9e-12 Score=123.37 Aligned_cols=281 Identities=15% Similarity=0.075 Sum_probs=205.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPR-PSAL 167 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~ 167 (557)
..+......+...|++++|...|+++.+.. +.+ ..++..+...+...|++++|.+.+++.... +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345567788889999999999999998864 223 467888999999999999999999887543 111 2355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC--CCCHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL--KPDQKMFHMMIYMYKKAGG--------------------YEKARK 225 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 225 (557)
++..+...+...|++++|...+.++++...... .....++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888899999999999999998875321110 1113477888889999999 777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC
Q 008708 226 LFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RP 304 (557)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~ 304 (557)
.+++.... ..... .......++..+...+...|++++|...+++..+... .+
T Consensus 165 ~~~~a~~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 165 LYEENLSL-------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 77655431 11110 0011234677888899999999999999998764310 11
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C
Q 008708 305 T----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQD----G 371 (557)
Q Consensus 305 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 371 (557)
+ ..++..+...+...|++++|...+++...... ..+ ..++..+...|...|++++|...+++.... +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 23778888899999999999999998764310 111 457788889999999999999999987653 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 372 -FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 372 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
......++..+...|...|++++|...++++.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1112457788999999999999999999998864
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=4.1e-12 Score=127.16 Aligned_cols=214 Identities=12% Similarity=0.081 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE-EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 330 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 330 (557)
++++...++...... +.+...+..+...|...|++ ++|+..|++.++.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566666555442 34788899999999999999 99999999998864 4468899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 008708 331 CMRRDRCSPDICSYTTMLSAYVNA---------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------NNLE 393 (557)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 393 (557)
+..+. .|+...+..+...|... |++++|+..|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99976 46678899999999999 99999999999998875 66788999999999999 9999
Q ss_pred HHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 008708 394 KMMEIYDKMRVNGIK---PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
+|...|+++.+.. + .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999853 3 478999999999999999999999999998843 4456678888899999999999987665
Q ss_pred hc
Q 008708 471 NF 472 (557)
Q Consensus 471 ~~ 472 (557)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=5.5e-12 Score=122.94 Aligned_cols=302 Identities=11% Similarity=0.014 Sum_probs=162.4
Q ss_pred hhhccchHHHHHHHHHHHhcCC-CCCCH--hhHHHHHHH--HHhcCChhHHH-----------HHHHHHHhCCCCCCHHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSW-WDFNE--MDFLMLITA--YGKQGDFNKAE-----------KVLSFMNKKGYAPSVVS 133 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~~~~ 133 (557)
....++++.|.++.+.+.+.-. .+.+. ..|..++.. ..-.+.++.+. +.++.+... +++...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 3445677778877777755321 11222 223333222 11223444444 666665442 112122
Q ss_pred H------HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC--
Q 008708 134 H------TALMEAYGRGGRYKNAEAIFRRMQSS----GPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL-- 200 (557)
Q Consensus 134 ~------~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 200 (557)
+ ......+...|++++|+..|++.... +..+ ...++..+...+...|++++|...+.++++......
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 2 22556677788888888888887653 1111 235677777888888888888888888775321110
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008708 201 -KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLI 278 (557)
Q Consensus 201 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 278 (557)
+....+++.+..+|...|++++|...|++..+. ... .+.. ....++..+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------------~~~---~~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM-------------------------AEA---EKQPQLMGRTLYNIG 231 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHH---TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------------------HHH---cCChHHHHHHHHHHH
Confidence 112356777788888888888888888766542 110 0000 0123566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDA----GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPDICSYTTMLS 349 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 349 (557)
.+|...|++++|+..+++..+. +. +....++..+..+|.+.|++++|...+++.... +.+.....+..+..
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788888888888888777652 22 223456666777777777777777777665432 10111122334444
Q ss_pred HHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 350 AYVNASD---MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 350 ~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
.+...|+ +++|+.++++.. ..+.....+..+...|...|++++|...|++..
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444555 444444443321 001112234444555555555555555555443
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=8.4e-12 Score=107.74 Aligned_cols=170 Identities=12% Similarity=0.085 Sum_probs=150.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 383 (557)
.+..+|..+...|...|++++|+..|++..+.. +.+..++..+..+|...|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367789999999999999999999999998764 4578899999999999999999999999998865 66788888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERN 463 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 463 (557)
..+...++++.|...+.+..+.. +.+...+..+..++.+.|++++|+..|++.++.. +.+...+..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999998753 4568889999999999999999999999999843 446788999999999999999
Q ss_pred HHHHHHHhcCCCCC
Q 008708 464 EANELLGNFNHPNN 477 (557)
Q Consensus 464 ~a~~~~~~~~~~~~ 477 (557)
+|...+++..+.++
T Consensus 159 ~A~~~~~~al~~~p 172 (184)
T 3vtx_A 159 EAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999876554
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.3e-11 Score=120.38 Aligned_cols=237 Identities=10% Similarity=0.003 Sum_probs=137.8
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHhCCCCCC---
Q 008708 106 YGKQGDFNKAEKVLSFMNKK--GYAPS--VVSHTALMEA--YGRGGRYKNAE-----------AIFRRMQSSGPRPS--- 165 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~--g~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~~~~~~--- 165 (557)
+.+.+++++|..+++++.+. .++.+ ...|-.++.. ....+.++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998653 22233 3333444332 22233444444 66666544211111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008708 166 -ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-PLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 242 (557)
Q Consensus 166 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 242 (557)
...+......+...|++++|...|+++++.... +.++ ...++..+..+|...|++++|...+.+..+.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------- 172 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI--------- 172 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------
Confidence 111223556778899999999999999853111 1111 2467888999999999999999999877653
Q ss_pred HHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 008708 243 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPT----HKAYNILLDAFA 317 (557)
Q Consensus 243 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~ 317 (557)
+...... ......+++.+...|...|++++|...|++..+... .++ ..++..+..+|.
T Consensus 173 ----------------~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 173 ----------------YKEHEAY-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ----------------HHTCSTT-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------HHhCccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1110000 001235677888889999999999999888764310 011 125556666666
Q ss_pred HcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRD----RC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
..|++++|...+++..+. +. +....++..+...|...|++++|...+++..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666655541 11 2223444455555555555555555555443
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=3e-11 Score=113.80 Aligned_cols=220 Identities=10% Similarity=0.075 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYG-------KARRE-------EEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34555555555542 235666777666664 34775 8888888888873123456688888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSP-DIC-SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA-KVNNLEKM 395 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a 395 (557)
.|++++|..+|++..+. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999988874 33 333 78888888888899999999999888764 445555554443322 26889999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPP--DQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
..+|+++++.. +.+...|..++..+.+.|++++|..+|+++++.. ++| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998888652 3457888888888888899999999999988852 455 3567888888888889999999888887
Q ss_pred CCCCC
Q 008708 473 NHPNN 477 (557)
Q Consensus 473 ~~~~~ 477 (557)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 64433
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=2e-10 Score=108.16 Aligned_cols=217 Identities=12% Similarity=0.101 Sum_probs=165.5
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK-------AGGY-------EKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
++|..+|++++... +.+...|..++..+.. .|++ ++|..+|++..+.
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--------------- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------- 93 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH---------------
Confidence 57777888887532 5567777777776654 3553 4555555444431
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HK-AYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~ 326 (557)
.. +-+...|..++..+.+.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|.
T Consensus 94 ----------------~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 94 ----------------LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp ----------------TT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred ----------------hC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHH
Confidence 11 225668888999999999999999999999874 443 33 7888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYV-NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
.+|++..+.. +++...|...+.... ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..+.
T Consensus 155 ~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 155 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999998764 334455554443322 3699999999999988763 557888999999999999999999999999986
Q ss_pred C-CCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 406 G-IKP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 406 ~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
. ++| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 454 467888899999999999999999999987
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=123.90 Aligned_cols=179 Identities=18% Similarity=0.230 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC----CC
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK----SP 199 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~ 199 (557)
..++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...++++++... ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666666677777777777776666552 1222345666677777777777777777777764210 11
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008708 200 LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 279 (557)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (557)
.+....++..+...|...|++++|...|+++.+. .+.......+.....+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------------------------~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------------------------REKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------------------HHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-------------------------HHHhcCCCChHHHHHHHHHHH
Confidence 2234567888999999999999999999887653 111111111123456788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 280 AYGKARREEEALAVFEEMLDA------GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
.|...|++++|+.+++++.+. +..| ...++..+..+|...|++++|...++++.+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988764 1122 234677788888888888888888888764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=1.2e-11 Score=123.66 Aligned_cols=212 Identities=12% Similarity=0.024 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF-KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 225 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 225 (557)
+++++..++...... +.+...+..+...+...|++ ++|++.|+++++.. +.+..+|..+..+|...|++++|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666655542 34777788888888888888 88888888887642 3457788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHH
Q 008708 226 LFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA---------RREEEALAVFEE 296 (557)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~ 296 (557)
.|++..+. .|+...+..+...|... |++++|+..|++
T Consensus 159 ~~~~al~~----------------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 159 CFSGALTH----------------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp HHHHHHTT----------------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh----------------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence 88887764 34556677777777777 888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 297 MLDAGVRPTHKAYNILLDAFAIS--------GMVDQARTVFKCMRRDRCS--PDICSYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 297 ~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
..+.. +.+...|..+..+|... |++++|...|++..+.... .+...|..+..+|...|++++|...|++
T Consensus 205 al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 205 AVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87753 34566777777777776 6677777777666654210 3555666666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 367 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIY 399 (557)
Q Consensus 367 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (557)
..+.. +.+...+..+..++...|++++|.+.+
T Consensus 284 al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 284 AAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65543 344555555666666666555555433
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=5.1e-10 Score=108.50 Aligned_cols=276 Identities=9% Similarity=0.003 Sum_probs=176.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC--CHHHHHH
Q 008708 136 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL----TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP--DQKMFHM 209 (557)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ 209 (557)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+++.+........+ ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556777777777777766654333322 44555666777788888888887776431111011 1234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCC
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ--P-DVVSYALLINAYGKARR 286 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 286 (557)
+...+...|++++|...+++.... . ...+.. | ....+..+...+...|+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~-------------------------~---~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQL-------------------------I---NEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------------------------H---HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-------------------------H---HHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 788888999999999998776642 1 111111 2 23455667778888888
Q ss_pred HHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHHcCC
Q 008708 287 EEEALAVFEEMLDAGVR----PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-D-ICSYT----TMLSAYVNASD 356 (557)
Q Consensus 287 ~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~g~ 356 (557)
+++|...+++....... ....++..+...+...|++++|...+++.......+ . ..... ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 88888888887654221 123567777788888888888888888775431111 1 11111 23344678888
Q ss_pred HHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHhcCChh
Q 008708 357 MEGAEKFFRRLKQDGFVP---NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPNQ-TIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~ 428 (557)
+++|...+++.......+ ....+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 988888888776543111 1335667778888889999998888887642 222222 35666777888889999
Q ss_pred HHHHHHHHHHh
Q 008708 429 SAVVWYKEMES 439 (557)
Q Consensus 429 ~A~~~~~~m~~ 439 (557)
+|...+++...
T Consensus 311 ~A~~~l~~al~ 321 (373)
T 1hz4_A 311 DAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888888764
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.7e-12 Score=120.03 Aligned_cols=247 Identities=14% Similarity=0.136 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008708 201 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 280 (557)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (557)
+....++..+...+...|++++|..+|+++.+. +........+....++..+...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------------------------~~~~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALED-------------------------LEKTSGHDHPDVATMLNILALV 78 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHHCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HHHHcCCCCHHHHHHHHHHHHH
Confidence 344577888999999999999999999887652 1111111112234567788888
Q ss_pred HHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHH
Q 008708 281 YGKARREEEALAVFEEMLDA------GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD------RC-SPDICSYTT 346 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~ 346 (557)
|...|++++|...++++... +- +....++..+...|...|++++|...+++..+. +. +....++..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999888653 21 223457788888899999999999999887753 21 223456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCcC--
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-------GIKPN-- 410 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~-- 410 (557)
+...+...|++++|..+++++... + .+....++..+..+|...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 888999999999999999988764 1 1223457888899999999999999999988752 11111
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 411 -----QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 411 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
...+..+...+...+.+.+|...++...... +....++..+..+|.+.|++++|..++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1223333344455666777777777776521 2234678888899999999999999998765
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.9e-10 Score=111.81 Aligned_cols=237 Identities=11% Similarity=0.075 Sum_probs=158.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSP--LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
.....+...|++++|...|+++++..... .+....++..+..+|...|+++.|...+.+..+.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------------- 170 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------- 170 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---------------
Confidence 34556778999999999999987532111 0112457888999999999999999999877652
Q ss_pred cCCHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCC
Q 008708 249 ETNYKEVSKIYDQMQRAGL-Q-PDVVSYALLINAYGKARREEEALAVFEEMLDA----GVRP-THKAYNILLDAFAISGM 321 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~ 321 (557)
+.. .+. . ....+++.+..+|...|++++|...|.+..+. +..+ ...++..+..+|...|+
T Consensus 171 ----------~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 171 ----------YQN---HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ----------HHT---STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHh---CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 110 000 0 12456788899999999999999999887652 1111 12467778888888888
Q ss_pred HHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC-
Q 008708 322 VDQARTVFKCMRR-----DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNVITYGTLIKGYAKVNN- 391 (557)
Q Consensus 322 ~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~- 391 (557)
+++|...|++... .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...|...++
T Consensus 238 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 8888888888765 32 223566777777888888888888888877653 112223345555566666666
Q ss_pred --HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 392 --LEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 392 --~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+.+|+.++++. +..|+ ...+..+...|...|++++|...++++.+
T Consensus 317 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666665552 22222 34556677777777888888777777654
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=8e-10 Score=107.11 Aligned_cols=278 Identities=10% Similarity=0.040 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS----ALTY 169 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~ 169 (557)
...+...+...|++++|...+++........+. .+++.+...+...|++++|...+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345566777889999999999998776422222 25677778888999999999999887653211 12 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCC-CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKS-PLK--P-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 245 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 245 (557)
..+...+...|++++|...+++.++.... +.. | ...++..+...+...|++++|...+++........
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------- 168 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-------- 168 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--------
Confidence 66778889999999999999988763211 111 2 23566778889999999999999998887642111
Q ss_pred hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHc
Q 008708 246 MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--HKAYN----ILLDAFAIS 319 (557)
Q Consensus 246 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~ 319 (557)
+......++..+...+...|++++|...+++.......++ ..... ..+..+...
T Consensus 169 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 169 --------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp --------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 1111235677788888999999999999998865321111 11111 233457789
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCC
Q 008708 320 GMVDQARTVFKCMRRDRCSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNV-ITYGTLIKGYAKVNN 391 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~ 391 (557)
|++++|...+++.......+ ....+..+...+...|++++|...+++.... +.+++. ..+..+..++...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999998887543221 1335677788899999999999999987542 222223 366777888999999
Q ss_pred HHHHHHHHHHHHH
Q 008708 392 LEKMMEIYDKMRV 404 (557)
Q Consensus 392 ~~~a~~~~~~m~~ 404 (557)
.++|...+++...
T Consensus 309 ~~~A~~~l~~al~ 321 (373)
T 1hz4_A 309 KSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=7.6e-11 Score=101.44 Aligned_cols=162 Identities=17% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554332 2244555555555555556666655555555442 334555555566666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANE 467 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 467 (557)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655432 3345555555566666666666666666655532 3344555556666666666666666
Q ss_pred HHHhcC
Q 008708 468 LLGNFN 473 (557)
Q Consensus 468 ~~~~~~ 473 (557)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=1.7e-10 Score=99.16 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3457778888999999999999999887653 4567888999999999999999999999988763 4577889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+...|++++|.+.++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 6688899999999999999999999999998763 45688899999999999999999
Q ss_pred HHHHHHHHh
Q 008708 431 VVWYKEMES 439 (557)
Q Consensus 431 ~~~~~~m~~ 439 (557)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=2.8e-10 Score=101.92 Aligned_cols=153 Identities=13% Similarity=-0.003 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566666777777777777777777777665432566666667777777777777777777776553 224556677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNV-------ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMD 419 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 419 (557)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777776653 3344 44666667777777777777777777654 333 455666666
Q ss_pred HHHhcCC
Q 008708 420 AYGKNKD 426 (557)
Q Consensus 420 ~~~~~g~ 426 (557)
+|...|+
T Consensus 162 ~~~~~~~ 168 (228)
T 4i17_A 162 LFYNNGA 168 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1.6e-10 Score=120.47 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+..+|+.|...|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999998864 4467899999999999999999999999998764 446889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
+|...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++.++.. +-+...|..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999875 5678899999999999999999999999999853 3458899999999999999999
Q ss_pred HHHHHHHHHh
Q 008708 430 AVVWYKEMES 439 (557)
Q Consensus 430 A~~~~~~m~~ 439 (557)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=1e-09 Score=106.55 Aligned_cols=234 Identities=9% Similarity=0.008 Sum_probs=173.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 286 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (557)
...+..+...|++++|+..|++..+.... ++. .....++..+...|...|+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~a~~~~~lg~~y~~~~~ 156 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD----------------------------IEKAEFHFKVAEAYYHMKQ 156 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh----------------------------HHHHHHHHHHHHHHHHcCC
Confidence 33455667788888888888777653100 000 0124567888999999999
Q ss_pred HHHHHHHHHHHHHcC--CC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcC
Q 008708 287 EEEALAVFEEMLDAG--VR---P-THKAYNILLDAFAISGMVDQARTVFKCMRRD----RCS-PDICSYTTMLSAYVNAS 355 (557)
Q Consensus 287 ~~~A~~~~~~~~~~~--~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 355 (557)
++.|...+.+..+.. .. + ...+++.+..+|...|++++|...|++..+. +.. ....+++.+...|...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999886531 11 1 2457888999999999999999999987653 111 12357888999999999
Q ss_pred CHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHHHHhcCC
Q 008708 356 DMEGAEKFFRRLKQ-----DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 356 ~~~~A~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~ 426 (557)
++++|...+++... .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 99999999999887 43 344778899999999999999999999998863 112224456667777888888
Q ss_pred ---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 427 ---FDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 427 ---~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+.+|+.++++. +..|+. ..+..+...|...|++++|...+++..
T Consensus 316 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777763 233333 466788899999999999999998764
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=6.2e-08 Score=99.77 Aligned_cols=430 Identities=13% Similarity=0.063 Sum_probs=278.5
Q ss_pred hchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHHHhhhccc---hHHHHHHHHHHHhcCCCCCCH
Q 008708 23 ADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKK---WNVVSEVLEWLRIQSWWDFNE 96 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~ 96 (557)
..+.|+.+|..++......+ .+..++++. ...-|.........+..-...+. .+.+.++|+........+++.
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEra-L~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKL-HDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 46789999999998876543 456666643 44455566666665555455666 899999999998765334677
Q ss_pred hhHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------cCChHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDF--------NKAEKVLSFMNK-KGY-AP-SVVSHTALMEAYGR---------GGRYKNAEAIFRR 156 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 156 (557)
..|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888877777766654 334578887664 354 33 56788888876542 3457889999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHhHhcc---CCCCC-----------C-----C-
Q 008708 157 MQSSGPRPSALTYQIILKLFVE-------------ANKFKEAEEVFMTLLDEE---KSPLK-----------P-----D- 203 (557)
Q Consensus 157 m~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~---~~~~~-----------~-----~- 203 (557)
.+..-...-..+|......-.. ..+++.|...+..+.... ...++ | +
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8863111122333222211111 112333444444422110 00011 1 1
Q ss_pred --HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHH-HHHHHHHHCCCCCC
Q 008708 204 --QKMFHMMIYMYKKAG-------GYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVS-KIYDQMQRAGLQPD 270 (557)
Q Consensus 204 --~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~-~~~~~~~~~~~~~~ 270 (557)
...|...+..--..+ ..+.+..+|++++.... .....|-. ++...++.++|. .+|+..... .+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 234555554333222 13345677888876532 24444433 333467778886 999999875 3446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAG---------VRPT------------HKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
...|...+...-+.|+++.|..+|++++... ..|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778888889999999999999999987641 0132 236778888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNA-SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
.+..+.........|...+..-.+. ++.+.|.++|+..++. .+.+...+...++.....|+.+.|..+|++.......
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9998761122334444333333344 4589999999999886 4557777788888888899999999999999876322
Q ss_pred c--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 008708 409 P--NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 458 (557)
Q Consensus 409 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 458 (557)
+ ....|...+..-.+.|+.+.+..+.+++.+. .|+......+..-|.-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 2 3467888888888999999999999999884 4555555555554443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=1.5e-10 Score=120.57 Aligned_cols=164 Identities=9% Similarity=0.086 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
+..+|+.|..+|.+.|++++|+..|++.++.. +-+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45689999999999999999999999998764 3468899999999999999999999999999875 567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHH
Q 008708 385 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTADERN 463 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 463 (557)
+|...|++++|++.|++.++.. +-+...|..+..+|...|++++|+..|+++++ +.| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999853 34588999999999999999999999999998 455 5678999999999999999
Q ss_pred HHHHHHHhcC
Q 008708 464 EANELLGNFN 473 (557)
Q Consensus 464 ~a~~~~~~~~ 473 (557)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=4.2e-11 Score=110.90 Aligned_cols=220 Identities=13% Similarity=0.098 Sum_probs=149.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 256 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------GV-RPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
+++++.......+....++..+...|...|++++|+..++++.+. +- +....++..+...|...|++++|...
T Consensus 28 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 107 (283)
T 3edt_B 28 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL 107 (283)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443322334667888999999999999999999998754 21 22345788899999999999999999
Q ss_pred HHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHH
Q 008708 329 FKCMRRD------R-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 329 ~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~ 394 (557)
+++.... . .+....++..+...|...|++++|...++++.+. + .+....++..+..+|...|++++
T Consensus 108 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 108 CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9988754 1 1234567888999999999999999999998764 1 12235678899999999999999
Q ss_pred HHHHHHHHHHC-------CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHH--h-CC-CCC-CHHHHHHHHHHHhhcCC
Q 008708 395 MMEIYDKMRVN-------GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEME--S-CG-FPP-DQKAKNILLSLAKTADE 461 (557)
Q Consensus 395 a~~~~~~m~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~-~~-~~p-~~~~~~~l~~~~~~~g~ 461 (557)
|..+++++.+. ...+ ....|..+...+...+....+..+..... + .+ ..| ...++..+..++...|+
T Consensus 188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 99999998752 1112 22344444444444333333322211111 1 11 112 23567888899999999
Q ss_pred HHHHHHHHHhcCCC
Q 008708 462 RNEANELLGNFNHP 475 (557)
Q Consensus 462 ~~~a~~~~~~~~~~ 475 (557)
+++|..++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=4e-10 Score=100.87 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 383 (557)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999887644788888889999999999999999999999875 55678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQ-------TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD---QKAKNILL 453 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~ 453 (557)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..++++++ +.|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 99999999999999999999753 3345 5688888899999999999999999998 4566 46778888
Q ss_pred HHHhhcCCH---------------------------HHHHHHHHhcCCCCC
Q 008708 454 SLAKTADER---------------------------NEANELLGNFNHPNN 477 (557)
Q Consensus 454 ~~~~~~g~~---------------------------~~a~~~~~~~~~~~~ 477 (557)
.++...|+. ++|...+++..+..+
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 888888887 889999988775544
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=4.5e-10 Score=104.70 Aligned_cols=197 Identities=13% Similarity=0.004 Sum_probs=124.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDA----GVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTML 348 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li 348 (557)
..|...|++++|...|.+..+. |-++. ..+|+.+..+|...|++++|+..+++..+. +-.. -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677777777777766442 21111 346677777777777777777777766542 1000 134677777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH------HHHHH
Q 008708 349 SAYVNA-SDMEGAEKFFRRLKQDGFV-PN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ------TIFTT 416 (557)
Q Consensus 349 ~~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ 416 (557)
..|... |++++|+..|++..+.... .+ ..++..++..+.+.|++++|+..|++..+....... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 8888888888877653100 01 346778888888888888888888888875322111 25667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh--hcCCHHHHHHHHHhcCCCCC
Q 008708 417 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQK------AKNILLSLAK--TADERNEANELLGNFNHPNN 477 (557)
Q Consensus 417 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 477 (557)
+..++...|++++|...+++.++ +.|+.. .+..++.++. ..+++++|...++++...++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 77788888888888888888876 344321 2344455554 45678888888877655443
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=1.5e-10 Score=107.20 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=122.9
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008708 282 GKARREEEALAVFEEMLDA-------GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD------RC-SPDICSYTTM 347 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 347 (557)
...|++++|+.++++.++. ..+....++..+...|...|++++|...+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4556666666666665441 22234567889999999999999999999988754 21 2245678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCc-CHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN------GIKP-NQTI 413 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 413 (557)
...|...|++++|...++++... . .+....++..+...|...|++++|..+++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1334667889999999999999999999998864 1122 3567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..+..+|...|++++|..+++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999875
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.10 E-value=6.5e-09 Score=91.39 Aligned_cols=176 Identities=14% Similarity=0.050 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI----------------LLDAFAISGMVDQARTVFKCMRRD 335 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~~ 335 (557)
..+......+...|++++|+..|++..+.. +.+...+.. +..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455666778888899988888887752 223345555 788888889999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCcCHHH
Q 008708 336 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN--LEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
. +.+...+..+...+...|++++|+..|++..+.. |.+..++..+..+|...|. .+.+...++.... ..|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 4 4467888888888899999999999999888865 5677888888888766654 3445555555542 1222333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+.....++...|++++|+..|+++++ +.|+......+..
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 44455566778889999999998887 5677655544443
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=6.8e-09 Score=83.65 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444444444444444444322 2233444444444444445555555444444432 33344444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 390 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|++++|.++++++.+.. +.+...+..++.++.+.|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555544431 22344444455555555555555555555443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=4.4e-09 Score=84.81 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
.+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56778889999999999999999998764 5678889999999999999999999999998764 456788899999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
..|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998743 456788889999999999999999999887643
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=5.7e-08 Score=88.78 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-----DICSY 344 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~ 344 (557)
..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHH
Confidence 33334445555555555555555555544331 123334445555555555555555555555443 23 13333
Q ss_pred HHHHHHH--HHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCcCH
Q 008708 345 TTMLSAY--VNAS--DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----G----IKPNQ 411 (557)
Q Consensus 345 ~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~----~~p~~ 411 (557)
..++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+. . -+.++
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 3333332 2222 555666666665443 343222233333555666666666666544421 0 02234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 412 TIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.++..+|......|+ +|.++++++.+
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 444444444444454 55566666655
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=4.7e-09 Score=96.00 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C-CCHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-S-PDICS 343 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~ 343 (557)
.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... . .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677788888899999999999999988753 223 56788888899999999999999999887532 1 22456
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q 008708 344 YTTMLSAYVN--------ASDMEGAEKFFRRLKQDGFVPNVITY-----------------GTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 344 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 398 (557)
+..+..++.. .|++++|+..|+++.+.. |.+.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888 899999999999988753 2232333 5668889999999999999
Q ss_pred HHHHHHCCCC-c-CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCH
Q 008708 399 YDKMRVNGIK-P-NQTIFTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQ----KAKNILLSLAKTADER 462 (557)
Q Consensus 399 ~~~m~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~ 462 (557)
|+++++.... + ....+..+..+|... |++++|...++++++. .|+. .....+...+...+++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHh
Confidence 9999874211 1 245777788888766 8889999999999873 4543 2333344444444444
Q ss_pred H
Q 008708 463 N 463 (557)
Q Consensus 463 ~ 463 (557)
+
T Consensus 249 ~ 249 (261)
T 3qky_A 249 E 249 (261)
T ss_dssp H
T ss_pred h
Confidence 3
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=1.6e-08 Score=94.05 Aligned_cols=211 Identities=10% Similarity=0.078 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
++++|...|.++ +..|...|++++|...|.+..+. +.
T Consensus 32 ~~~~A~~~~~~a------------------~~~~~~~g~~~~A~~~~~~al~~-------------------------~~ 68 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------ATIYRLRKELNLAGDSFLKAADY-------------------------QK 68 (292)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHTTCTHHHHHHHHHHHHH-------------------------HH
T ss_pred cHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHH-------------------------HH
Confidence 366666666655 33566778888888877666542 11
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 008708 261 QMQRAGLQP-DVVSYALLINAYGKARREEEALAVFEEMLDAGVR-PT----HKAYNILLDAFAIS-GMVDQARTVFKCMR 333 (557)
Q Consensus 261 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~ 333 (557)
+.+.++ ...+|+.+..+|.+.|++++|+..+++.++.... .+ ..++..+..+|... |++++|+..|++..
T Consensus 69 ---~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 69 ---KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ---HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 111111 1457888999999999999999999988653110 11 35788899999996 99999999999887
Q ss_pred hCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 334 RDRCS-PD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV------ITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 334 ~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
+.... .+ ..+++.+...+...|++++|+..|++..+....... ..|..++.++...|++++|...|++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53111 01 356888999999999999999999999886422221 25778888999999999999999998
Q ss_pred HHCCCCcCH------HHHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 008708 403 RVNGIKPNQ------TIFTTIMDAYG--KNKDFDSAVVWYKEMES 439 (557)
Q Consensus 403 ~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 439 (557)
.+. .|+. ..+..++.++. ..+++++|+..|+.+..
T Consensus 226 l~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 226 QSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred Hhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 753 3332 23445566664 45678888888877653
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=5.3e-09 Score=109.47 Aligned_cols=184 Identities=11% Similarity=-0.022 Sum_probs=138.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 282 GKARREEEALAVFEEML--------DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
...|++++|++.+++.. +. .+.+...+..+..+|...|++++|...|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888988888887 33 23456678888888888899999999888887653 3467788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
.|++++|+..|++..+.. +.+...+..+..+|.+.|++++ .+.|+++.+.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998888764 5567788888888888999988 88888888753 34577888888888899999999998
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHhhcCC--------HHHHHHHHHhc
Q 008708 434 YKEMESCGFPPDQ-KAKNILLSLAKTADE--------RNEANELLGNF 472 (557)
Q Consensus 434 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~--------~~~a~~~~~~~ 472 (557)
|+++++ +.|+. ..+..+..++...++ +++|.+.++.+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888876 45654 566666666655443 55555555554
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=5.2e-08 Score=85.80 Aligned_cols=176 Identities=17% Similarity=0.074 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 008708 254 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG----MVDQARTVF 329 (557)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 329 (557)
+|.+.|+...+.| +...+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455666666653 77788888888989999999999999998865 66777778888877 6 899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFV-PNVITYGTLIKGYAK----VNNLEKMMEIYD 400 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 400 (557)
++..+.+ ++..+..+...|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988765 67788888888877 78999999999988876511 126788888888888 788999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGKN-K-----DFDSAVVWYKEMESCG 441 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~ 441 (557)
+..+. ..+...+..+...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98876 23555677777777643 3 8899999999988866
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=2.2e-08 Score=91.56 Aligned_cols=182 Identities=11% Similarity=0.054 Sum_probs=138.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 290 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 290 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877655 56677777888999999999999999999876653 2366788899999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 369 QDGFVP-----NVITYGTLIKG--YAKVN--NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 369 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 35566666666 33345 899999999999765 45533444444589999999999999997764
Q ss_pred C-----CC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 440 C-----GF----PPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 440 ~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
. .- +-++.++..++......|+ +|.++++++.+..+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 2 00 3355677677766777787 889999988765553
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=3.2e-08 Score=90.44 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 205 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 205 (557)
.+...+..+...+.+.|++++|+..|+++.+..+. + ...+..+..++...|++++|+..|+++++..+ ..+....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchhHH
Confidence 35666777777778888888888888888775433 3 56677777888888888888888888876421 1122245
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008708 206 MFHMMIYMYKK--------AGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALL 277 (557)
Q Consensus 206 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (557)
++..+..++.. .|++++|+..|+++.+..+... .. ..+...+..+... ....+..+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~-----------~~a~~~~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LV-----------DDATQKIRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-TH-----------HHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch-hH-----------HHHHHHHHHHHHH----HHHHHHHH
Confidence 67778888888 8999999999998887532211 11 1111111111110 11124556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhC
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRP--THKAYNILLDAFAIS----------GMVDQARTVFKCMRRD 335 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 335 (557)
...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 667777777777777777776642111 234555666666654 6666666666666654
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=1.6e-06 Score=86.60 Aligned_cols=341 Identities=10% Similarity=0.006 Sum_probs=205.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH----HcCCH
Q 008708 110 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSS-GPR-PSALTYQIILKLFV----EANKF 182 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~~-~~~~~~~~ll~~~~----~~g~~ 182 (557)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..+.. |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6677777777777764 4677777777766666553 34455666665542 322 35566666655433 23566
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK-------------KAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 249 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 249 (557)
+.+.++|++++.. +...-...|......-. ..+.+..|..+++.+...-...+...|...+...
T Consensus 106 ~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 106 EKIRNGYMRALQT---PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 7777777777742 11111122222211110 1123334454554443210011333455444421
Q ss_pred -CC---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008708 250 -TN---------YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 319 (557)
Q Consensus 250 -~~---------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 319 (557)
++ ...+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|...
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 11 345678899888764 346788888888899999999999999999987 33433332 22222
Q ss_pred CCHHHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 320 GMVDQARTVFKCMRRDR---------C---SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
...++. ++.+.+.- . ......|...+..+.+.++.+.|..+|.++ ... +.+...|...+..-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111111 22222110 0 011245666777777788999999999999 322 234555543333333
Q ss_pred HcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 008708 388 KVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 466 (557)
Q Consensus 388 ~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 466 (557)
..+ +.+.|..+|+...+. .+-++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 334 699999999999875 23346667778888888999999999999973 24677888888888889999999
Q ss_pred HHHHhcC
Q 008708 467 ELLGNFN 473 (557)
Q Consensus 467 ~~~~~~~ 473 (557)
.++++..
T Consensus 405 ~v~~~~~ 411 (493)
T 2uy1_A 405 ELVDQKM 411 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.9e-08 Score=88.42 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT----------------MLSAYVNASDMEGAEKFFRRLKQD 370 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~ 370 (557)
..+......+...|++++|+..|++..+.. +.+...|.. +..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667789999999999999998753 224456666 889999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCH--
Q 008708 371 GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD--FDSAVVWYKEMESCGFPPDQ-- 446 (557)
Q Consensus 371 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~-- 446 (557)
. |.+...+..+..++...|++++|...|+++++.. +.+...|..+..+|...|+ .+.+...++... .|++
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQ 157 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchh
Confidence 5 6688999999999999999999999999999863 4468889999888866654 345555665553 3444
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 447 KAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
..+.....++...|++++|...+++..+..+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34455566777889999999999999877664
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=2.5e-09 Score=88.42 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=90.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 393 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 393 (557)
.++...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445566777777776665431 1123345566677777777777777777777654 556777777777777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW-YKEMESCGFPP-DQKAKNILLSLAKTADE 461 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 461 (557)
+|...|++..+.. +-+...|..+..+|.+.|++++|... ++++++ +.| ++.++......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777642 33466777777777777777665543 466666 334 44556555556655553
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=8e-08 Score=84.58 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS----DMEGAEKF 363 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 363 (557)
.+|+..|++..+.| ++..+..+...|...+++++|..+|++..+.+ ++..+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 78888899999999999999999999999875 77888888888887 6 89999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCChhHHHHHH
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGK----NKDFDSAVVWY 434 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~ 434 (557)
|++..+.| +...+..|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 67788888888887 88999999999999986521 127788888888888 88999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHhcCCCCCC
Q 008708 435 KEMESCGFPPDQKAKNILLSLAKTA-D-----ERNEANELLGNFNHPNNE 478 (557)
Q Consensus 435 ~~m~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 478 (557)
++..+. +++...+..|...|... | +.++|...+++..+.+..
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999985 34556777777777653 3 899999999987655543
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=4e-08 Score=91.09 Aligned_cols=167 Identities=8% Similarity=0.007 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYT-T 346 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 346 (557)
+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345667778888888899999999999887763 446678888888888899999999888887665 34443322 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcC
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g 425 (557)
....+...++.+.|...+++..... |.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667777788888888887764 667788888888888888888888888888865311 12567888888888888
Q ss_pred ChhHHHHHHHHHH
Q 008708 426 DFDSAVVWYKEME 438 (557)
Q Consensus 426 ~~~~A~~~~~~m~ 438 (557)
+.++|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888887764
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=5.1e-09 Score=86.59 Aligned_cols=146 Identities=8% Similarity=-0.053 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
|...+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|++..+.. +.+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445566778888888888775431 1123355677888888899999999998887754 4477888888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI-YDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
+++|+..|++..+.. |-+...+..+...|.+.|++++|.+. ++++.+.. +-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999888764 55678888888899999988776654 57777642 3356777777777766664
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=2.4e-07 Score=82.44 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVR-P-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDI-CSYTT 346 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~ 346 (557)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677777888888888777764211 1 1345666777777778888888777777654321 111 23444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 347 MLSAYVN------------------ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 347 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
+..++.. .|++++|...|+++.+.. |-+...+...... ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH------
Confidence 4444433 456677777777766542 2222222111100 0000000
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 409 PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-Q---KAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 409 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
......+...|.+.|++++|+..|+++++. .|+ + ..+..+..++.+.|+.++|...++.+....+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011134566777888888888888888763 333 2 4567777788888888888888887664433
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=2.4e-08 Score=85.13 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA-YV 352 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~ 352 (557)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..... |++..+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777777777777777765532 3355667777777777777777777777765543 244333222211 11
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
..+....|...+++..+.. |.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566677666653 4456677777777777777777777777777643211 2456667777777777777777
Q ss_pred HHHHHHH
Q 008708 432 VWYKEME 438 (557)
Q Consensus 432 ~~~~~m~ 438 (557)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=2.8e-08 Score=103.94 Aligned_cols=173 Identities=9% Similarity=-0.019 Sum_probs=143.8
Q ss_pred cccCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 247 SFETNYKEVSKIYDQMQ--------RAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
...+++++|.+.+++.. +.. +.+...+..+...|...|++++|+..|+++.+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34688889999888887 432 3356788899999999999999999999998764 4577899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 398 (557)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ +..|+++.+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 3467889999999999999999 99999998875 66788999999999999999999999
Q ss_pred HHHHHHCCCCcC-HHHHHHHHHHHHhcCC
Q 008708 399 YDKMRVNGIKPN-QTIFTTIMDAYGKNKD 426 (557)
Q Consensus 399 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 426 (557)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998875 455 6677778888766555
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=5.5e-08 Score=91.19 Aligned_cols=184 Identities=11% Similarity=0.019 Sum_probs=102.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCC--CHHHHHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDAGV---RP--THKAYNILLDAFAISGMVDQARTVFKCMRRD---RCSP--DICSYTTML 348 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~--~~~~~~~li 348 (557)
..|...|++++|...|.+..+... .+ -..+|+.+..+|...|++++|+..|++.... ...+ ...+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666665543210 00 1235566666666667776666666655432 0011 124566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHH
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGF---VP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIM 418 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~ 418 (557)
..|.. |++++|+..|++...... .+ ...++..+...|.+.|++++|+..|++..+. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 777777777776654210 00 1345667777777777777777777777642 11111 22455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC---H---HHHHHHHHHHhhcCCHHHHHH
Q 008708 419 DAYGKNKDFDSAVVWYKEMESCGFPPD---Q---KAKNILLSLAKTADERNEANE 467 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~~~~p~---~---~~~~~l~~~~~~~g~~~~a~~ 467 (557)
.++...|++++|...|++.+ . .|+ . .....++.++ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 66667777777777777776 2 221 1 1233444444 4566666555
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=4.6e-08 Score=100.43 Aligned_cols=151 Identities=11% Similarity=-0.035 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
+++++|...+++..+... .+...+..+...|...|++++|...+++..+.. +.+...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344555555555544321 134555555555555555555555555555432 233445555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV---NNLEKMMEIYDKMRV 404 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 404 (557)
++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555432 2234455555555555555555555555555442 33445555555555555 555555555555554
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=3.7e-08 Score=91.32 Aligned_cols=164 Identities=4% Similarity=-0.099 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY-GT 381 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ 381 (557)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455677888889999999999999999998764 447788999999999999999999999998765 3554433 33
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhh
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD---QKAKNILLSLAKT 458 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~ 458 (557)
....+...++.+.|...+++..+.. +.+...+..+..++...|++++|...++++++. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 3344677888999999999998763 556889999999999999999999999999984 454 5688999999999
Q ss_pred cCCHHHHHHHHHhc
Q 008708 459 ADERNEANELLGNF 472 (557)
Q Consensus 459 ~g~~~~a~~~~~~~ 472 (557)
.|+.++|...+++.
T Consensus 268 ~g~~~~a~~~~r~a 281 (287)
T 3qou_A 268 LGTGDALASXYRRQ 281 (287)
T ss_dssp HCTTCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHH
Confidence 99999999888764
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=3.7e-08 Score=101.13 Aligned_cols=154 Identities=8% Similarity=-0.030 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (557)
.|++++|+..+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988753 4467889999999999999999999999998764 44688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN---KDFDSAVVWYKEMESC 440 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 440 (557)
+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++... |++++|...++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5678899999999999999999999999998763 44678899999999999 9999999999999884
Q ss_pred C
Q 008708 441 G 441 (557)
Q Consensus 441 ~ 441 (557)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=1.1e-07 Score=84.66 Aligned_cols=154 Identities=8% Similarity=-0.025 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-P-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITY 379 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~ 379 (557)
+...+..+...+...|++++|+..|+++...... | ....+..+..+|.+.|++++|+..|+++.+.. |.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3445556677788888899999888888765321 1 13567778888888888888888888887753 2121 244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-H-----------
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-K----------- 447 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~----------- 447 (557)
..+..++...|.. .+ ..|..+...+...|++++|+..|+++++. .|+. .
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH
Confidence 4455555442110 00 00111111222334444444444444431 1221 1
Q ss_pred ------HHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 448 ------AKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 448 ------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
....+...+.+.|++++|...++++.+..+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 1134567889999999999999998755443
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=2.6e-06 Score=78.66 Aligned_cols=218 Identities=6% Similarity=0.003 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCH
Q 008708 112 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG--RYKNAEAIFRRMQSSGPRPSALTYQIILKLF----VEA---NKF 182 (557)
Q Consensus 112 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---g~~ 182 (557)
.++|+++++.++..+ |-+..+|+.--.++...| +++++++.++.++...++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 368888888888775 336777888888888888 888999998888887655 555555544444 444 678
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
++++.+++.+++.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+
T Consensus 127 ~~EL~~~~~~l~~~----pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~------------------------- 177 (306)
T 3dra_A 127 YREFDILEAMLSSD----PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL------------------------- 177 (306)
T ss_dssp HHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-------------------------
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-------------------------
Confidence 88888888888643 567777777777777777777 77777777776532
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 008708 261 QMQRAGLQPDVVSYALLINAYGKARR------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ-ARTVFKCMR 333 (557)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~ 333 (557)
.|...|+.....+.+.+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..++.
T Consensus 178 --------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 178 --------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp --------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred --------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 244444444444444443 556666666655543 3455555555555555554222 223333332
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 334 RDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 334 ~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
..+ -+.+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 211 122444444444455555555555555555443
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.85 E-value=2.1e-06 Score=85.75 Aligned_cols=332 Identities=13% Similarity=0.076 Sum_probs=207.2
Q ss_pred hcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHH
Q 008708 108 KQG-DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEA 185 (557)
Q Consensus 108 ~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~A 185 (557)
+.| +++.|+.+|+.+... -|. |+++.+..+|++.+.. .|+...|...+.-..+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 233 8899999999999874 4699999998888777764 4567
Q ss_pred HHHHHHhHhccCCC-CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc------------
Q 008708 186 EEVFMTLLDEEKSP-LKPDQKMFHMMIYMYK----KAGGYEKARKLFALMAERGVQQSTVTYNSLMSF------------ 248 (557)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~------------ 248 (557)
..+|+.++.. .| -+.+..+|...+..+. ..++.+.+..+|+..+......-...|......
T Consensus 68 ~~~fe~al~~--vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQ--FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHH--STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHH--cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHH
Confidence 7788888753 12 2346688888887654 356788999999999874222112233322221
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008708 249 ----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR--R-----EEEALAVFEEMLDAGVRPTHKAYNILLDAFA 317 (557)
Q Consensus 249 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 317 (557)
...+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1122333444444432111113345555554432221 1 345778899988753 556788888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------CC---CCCHHHHHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD---------GF---VPNVITYGTLIKG 385 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~---~p~~~~~~~l~~~ 385 (557)
..|+.+.|..++++.... +.+...|.. |....+.++. ++.+.+. +. ......|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 999999999999999887 334333322 2222111111 2222211 00 1112456677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK-NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 464 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 464 (557)
+.+.+..+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...+. .+-++..+...+......|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77788999999999999 32 12355555543333223 33699999999999874 23345666777788888999999
Q ss_pred HHHHHHhc
Q 008708 465 ANELLGNF 472 (557)
Q Consensus 465 a~~~~~~~ 472 (557)
|+.+++++
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99999987
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=3.5e-07 Score=80.38 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|+..|++..... +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455666777888888888887664 4577788888888888888888888888877764 5567788888888888
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 389 VNNLEKMMEIYDKMRVNG--------------IKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~--------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
.|++++|...|+++.+.. ..| ....+..+..+|.+.|++++|...++++.+ +.|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~------- 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP------- 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG-------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc-------
Confidence 888888888888888642 111 136788888899999999999999999987 44543
Q ss_pred HHHhhcCCHHHHHHHHHh
Q 008708 454 SLAKTADERNEANELLGN 471 (557)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~ 471 (557)
..+..+.+...+++
T Consensus 155 ----~~~~~~~a~~~~~~ 168 (213)
T 1hh8_A 155 ----RHSKIDKAMECVWK 168 (213)
T ss_dssp ----GGGHHHHHHHHHHT
T ss_pred ----ccchHHHHHHHHHh
Confidence 23455566666654
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=4e-06 Score=77.36 Aligned_cols=220 Identities=8% Similarity=0.041 Sum_probs=122.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH----HHc-
Q 008708 145 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY----KKA- 217 (557)
Q Consensus 145 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 217 (557)
...++|+.+++.++..++. +..+|+.--.++...+ +++++++.++.++... +.+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHHHHHHHHHHHHHHHhcc
Confidence 3446778887777776444 5566666666666666 7777777777777532 33344454433333 333
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHH
Q 008708 218 --GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE--EALAV 293 (557)
Q Consensus 218 --g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~ 293 (557)
+++++++.+++++.+. . +.+..+|+...-.+.+.|.++ ++++.
T Consensus 122 ~~~~~~~EL~~~~~~l~~--------------------------------~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSS--------------------------------D-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp TCCCTHHHHHHHHHHHHH--------------------------------C-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh--------------------------------C-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4455555555555443 2 235666666666666667666 77777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 008708 294 FEEMLDAGVRPTHKAYNILLDAFAISGM------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG-AEKFFRR 366 (557)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 366 (557)
++++++.. +-|...|+.-...+.+.+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..+
T Consensus 169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 77777664 3456666655555555554 555666555555433 3355555555555555554322 3334433
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 367 LKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 367 m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
+...+ -+.+...+..++++|.+.|+.++|.++++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33211 123445555555555555555555555555553
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=4.3e-08 Score=83.48 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=100.6
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA-Y 141 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~ 141 (557)
.+.....+...|+++.|...++.+.+.. +.+...+..+..++.+.|++++|...|++..... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3333444556677777777777666544 2356667777777777788888877777766553 344433332212 1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 142 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221 (557)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 221 (557)
...+....|+..+++..+..+. +...+..+..++...|++++|...|+++++.. +...+...+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVN--LGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccChHHHHHHHHHHHHHhCCCC
Confidence 2222333467777777665333 56777777777777777777777777777421 11123456777777777777777
Q ss_pred HHHHHHHHHHH
Q 008708 222 KARKLFALMAE 232 (557)
Q Consensus 222 ~A~~~~~~~~~ 232 (557)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77777766553
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=1.8e-07 Score=87.73 Aligned_cols=132 Identities=11% Similarity=0.021 Sum_probs=64.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 152 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 152 (557)
.+++.+|.++++.+.+... .. .+...+++++|...|++. ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3556666666666554321 00 011135566666655543 335556667777766
Q ss_pred HHHHHHhCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 008708 153 IFRRMQSSGP----R-PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP--DQKMFHMMIYMYKKAGGYEKARK 225 (557)
Q Consensus 153 ~~~~m~~~~~----~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 225 (557)
.|.+...... . .-..+|..+...|...|++++|+..|++.++.....-.+ ...+++.+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6666543211 0 012345555556666666666666666555321100011 12344555555555 66666655
Q ss_pred HHHHHH
Q 008708 226 LFALMA 231 (557)
Q Consensus 226 ~~~~~~ 231 (557)
.|++..
T Consensus 137 ~~~~Al 142 (307)
T 2ifu_A 137 LYQQAA 142 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=2.1e-07 Score=74.12 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456666777777788888888887777654 5567777778888888888888888888777653 34567777777888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPD-QKAKNIL 452 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 452 (557)
...|++++|+..|++.++ +.|+ ...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence 888888888888888777 3454 3344433
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=3e-06 Score=78.62 Aligned_cols=163 Identities=7% Similarity=-0.030 Sum_probs=120.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 008708 311 ILLDAFAISGMVDQARTVFKCMRRDRC-SPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYG 380 (557)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~ 380 (557)
..+..+...|++++|..++++...... .|+. ..+..+...+...|++++|+..++++..... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998876421 2221 1333466677777899999999999887422 222 34688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRV----N-GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAK 449 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~ 449 (557)
.++.+|...|++++|...|+++.+ . +..+. ..+|..+..+|.+.|++++|+.++++.++ .+..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 11222 34788899999999999999999998864 222333 4678
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHhcC
Q 008708 450 NILLSLAKTAD-ERNEANELLGNFN 473 (557)
Q Consensus 450 ~~l~~~~~~~g-~~~~a~~~~~~~~ 473 (557)
..+..++.+.| .+++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88889999999 4699998888764
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=5.5e-06 Score=76.86 Aligned_cols=167 Identities=9% Similarity=-0.028 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTH------KAYNILLDAFAISGMVDQARTVFKCMRRDRC---SPD-- 340 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~-- 340 (557)
..+...+..+...|++++|...+.+..+.... .. ..+..+...+...|++++|...+++...... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44556778889999999999999988775322 22 2244456667788899999999998875321 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQD--GFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN 410 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~ 410 (557)
..+++.+...|...|++++|...|+++.+. ..+.+ ..++..++.+|...|++++|...+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 457889999999999999999999988731 11111 257888999999999999999999988742 11111
Q ss_pred -HHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 008708 411 -QTIFTTIMDAYGKNKDFDSA-VVWYKEMES 439 (557)
Q Consensus 411 -~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 439 (557)
..+|..+..+|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67788899999999999999 777877653
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=8.9e-07 Score=77.76 Aligned_cols=128 Identities=14% Similarity=0.000 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
..+..+...+...|++++|+..|++.. .|+..++..+..+|...|++++|...|++..... +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667788889999999999998773 5688899999999999999999999999988764 45778899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPN----------------VITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
...|++++|+..|++..+.. +.+ ...+..+..+|...|++++|...|+++.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999998853 222 278889999999999999999999999975
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=4e-07 Score=72.43 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
..+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|++.++..+. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345667777888888888888888877664 446777888888888888888888888887776443 667777777788
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 211 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (557)
...|++++|++.|+++++.. |.+..++..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~----P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD----PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC----cCCHHHHHHHH
Confidence 88888888888888877542 33444444443
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.72 E-value=2.4e-07 Score=76.16 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+.+.|++++|+..|+++.... |.+...|..+..+|...|++++|+..|+++.+.. +.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 4456677777778888888888888877764 5567778888888888888888888888887653 3346777778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
|.+.|++++|...|++.++ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8888888888888888877 456554
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=1.2e-07 Score=87.59 Aligned_cols=195 Identities=9% Similarity=0.026 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56678888999999999999999999998863 4478889999999999999999999999998764 457788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
+|...|++++|...|++..+.. +.+...+...+....+ ..++. -+........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999987642 1111111111111111 11111 22223333345555555555433 3689999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhc-CCHHHHHHHHHhcCCC
Q 008708 430 AVVWYKEMESCGFPPDQK-AKNILLSLAKTA-DERNEANELLGNFNHP 475 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 475 (557)
|++.+++..+ ..|+.. ....+...+.+. +.+++|.++++++.+.
T Consensus 154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998887 456654 344444445554 7789999999987653
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=8.6e-07 Score=69.92 Aligned_cols=114 Identities=20% Similarity=0.308 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+...|++++|.+.++++.... +.+..++..++..+...|++++|..+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455566666666666666666666666543 4455666666666777777777777777666542 3355666666667
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777777777777766532 233444444444443
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.68 E-value=7.6e-07 Score=74.53 Aligned_cols=128 Identities=17% Similarity=0.083 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+..+...+...|++++|...|++..... +.+..++..++.++...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 446666677777788888888887777653 4567777778888888888888888888877653 34567777778888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhhcCCHHHHHHHHHhc
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNI--LLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 472 (557)
...|++++|...++++.+.. +.+...+.. .+..+...|++++|...+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888888887632 334444433 333366778888888877664
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=1e-06 Score=73.71 Aligned_cols=128 Identities=9% Similarity=0.014 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+++..... +.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455555666666666666666655432 2345666666666677777777777777666653 445666777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHH--HHHHHhcCChhHHHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTI--MDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..|++++|...|+++.+.. +.+...+..+ +..+...|++++|+..+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777776542 2234444333 333556677777777766553
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=8.4e-07 Score=82.46 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=104.3
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNE----MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-PS----VVSHTAL 137 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~l 137 (557)
+..+...++++.|.++++.+.+.....++. ..+..+...+...|++++|...|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334556677888888887776644222221 12334666666777888888888877763211 12 3367777
Q ss_pred HHHHHhcCChHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHHHHH
Q 008708 138 MEAYGRGGRYKNAEAIFRRMQS----S-GPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKMFHM 209 (557)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~----~-~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~~~~ 209 (557)
..+|...|++++|+..|+++.+ . +..+ ...++..+...|.+.|++++|...++++++... .+ ...-..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7888888888888888877763 1 1111 223666777778888888888888777765311 11 1112466777
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHH
Q 008708 210 MIYMYKKAG-GYEKARKLFALMAE 232 (557)
Q Consensus 210 l~~~~~~~g-~~~~A~~~~~~~~~ 232 (557)
+..+|.+.| .+++|...|++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777888888 45788877776653
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=1.9e-07 Score=76.76 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM 210 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 210 (557)
...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|+..|++++... +.+...|..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHHHH
Confidence 445555556666666666666666666554332 55556666666666666666666666665432 2334555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 008708 211 IYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 211 ~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
..+|...|++++|+..|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666554
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=1.6e-06 Score=68.35 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=86.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|+..++++....+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4567778888888888888888888887654 34677888888888888888888888888877543 367777888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
+...|++++|...++++++.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 888888888888888887532 34455666666555443
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.63 E-value=7.6e-07 Score=70.90 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555556666666666666666655543 3455566666666666666666666666666542 3345566666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666666532 2344555555555555544
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.63 E-value=4.2e-05 Score=71.35 Aligned_cols=173 Identities=7% Similarity=-0.010 Sum_probs=118.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA-N-KFKEA 185 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g-~~~~A 185 (557)
.+..++|+++++.++..+ +.+..+|+.--.++...| .+++++++++.++...++ +..+|+.-..++... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 344578999999998875 346778888888888888 599999999999887665 777888777777776 6 88899
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 008708 186 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--------KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 257 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~ 257 (557)
+++++++++. -+.+..+|+.-.-++.+.|.++ ++++.++++.+.
T Consensus 145 L~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------------------------ 196 (349)
T 3q7a_A 145 IEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------------------------ 196 (349)
T ss_dssp HHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------------------------
Confidence 9999999753 2556777776555555555444 555555555543
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARR-------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 321 (557)
. +.|...|+.....+.+.+. ++++++.+.+++... +-|...|+-+-..+.+.|.
T Consensus 197 --------d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 197 --------D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp --------C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred --------C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 2 2256666666666655554 567777777776653 4466666666655555554
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=6.3e-07 Score=71.77 Aligned_cols=117 Identities=11% Similarity=0.021 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44556666666667777777777777666553 4456666667777777777777777777766542 334666666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTAD 460 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 460 (557)
++.+.|++++|...+++..+. .| +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 777777777777777776652 23 2344555555554443
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=6.2e-06 Score=76.54 Aligned_cols=173 Identities=11% Similarity=0.056 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HH
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA-----LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QK 205 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~ 205 (557)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+.++++.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566677777777777777776664332111 1233455566778899999999988875422222222 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP--DVVSYALLINAYGK 283 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 283 (557)
+++.++..|...|++++|...|++..+. ++ .....+ ...++..+...|..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~-------------------------~~---~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQ-------------------------LE---ALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HH---hcCccccchHHHHHhHHHHHHH
Confidence 8889999999999999999999887642 11 000001 12578888999999
Q ss_pred cCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAG----VRP-THKAYNILLDAFAISGMVDQA-RTVFKCMR 333 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 333 (557)
.|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++..
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999876531 111 155777888888888888888 66666554
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.59 E-value=1.1e-06 Score=70.02 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcC----HHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPN----QTIFT 415 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~ 415 (557)
.++..+...+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677778888888888888888877764 5567778888888888888888888888877531 1111 24667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
.+..++...|++++|+..|++.++ ..|++.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 777788888888888888888876 46776655443
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=1.7e-07 Score=77.00 Aligned_cols=98 Identities=8% Similarity=-0.041 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34556666777777888888888888777654 5577777777788888888888888888877643 335667777777
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
+|...|++++|...|++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887766
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=3.5e-07 Score=77.77 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG-YAKVNNL--EKM 395 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~~a 395 (557)
.|++++|...+++..... +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555554432 2345555566666666666666666666655543 3355555556666 5566665 666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
...++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66666666542 23355566666666666666666666666665
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=1.8e-06 Score=68.59 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 44444455555555555555555554432 2244555555555555566666666655555442 334555556666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
..|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666655532 2244555555555555554
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=1.4e-06 Score=69.64 Aligned_cols=119 Identities=11% Similarity=-0.011 Sum_probs=92.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...+..+...+.+.|++++|...|++..+.. +.+..++..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345677888888899999999999999888764 347788888888898999999999999888876433 677888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 174 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
.++...|++++|.+.|+++++.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD----SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhc
Confidence 88889999999999998887532 234456666666666554
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=9.9e-07 Score=76.69 Aligned_cols=157 Identities=14% Similarity=0.061 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCS-PDICSYTTMLSAYVNASD 356 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~ 356 (557)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456777777744444321 1224456666777777777777777777766541 111 123456677777778888
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcC
Q 008708 357 MEGAEKFFRRLKQD----GFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKP-NQTIFTTIMDAYGKNK 425 (557)
Q Consensus 357 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g 425 (557)
+++|...+++.... +-.| ....+..+...+...|++++|...+++..+. +... -..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888777776542 1011 2345677788888888888888888877632 1111 1234567777888888
Q ss_pred ChhHHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMES 439 (557)
Q Consensus 426 ~~~~A~~~~~~m~~ 439 (557)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877754
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.5e-06 Score=69.02 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666667777777777777777777654 5566777777777777788888887777777643 3346677777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 008708 421 YGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~ 439 (557)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7778888888877777765
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=7.9e-07 Score=81.97 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
+...+..+...+...|++++|+..|++.....+. +...|..+..++.+.|++++|+..++++++. .+.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHH
Confidence 4556666666777777777777777776665332 5666667777777777777777777777642 2345566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 210 MIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
+..+|...|++++|...|++..+.
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777766543
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=7.6e-07 Score=77.44 Aligned_cols=156 Identities=13% Similarity=-0.026 Sum_probs=115.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCC
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GF-VPNVITYGTLIKGYAKVNN 391 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~g~ 391 (557)
...|++++|.++++.+.. .......++..+...+...|++++|...+++.... +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999996655543 22245678899999999999999999999988761 21 2234678889999999999
Q ss_pred HHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhcC
Q 008708 392 LEKMMEIYDKMRVN----GIKP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPDQ----KAKNILLSLAKTAD 460 (557)
Q Consensus 392 ~~~a~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g 460 (557)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+.. -.++. .++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999988753 2111 24567888889999999999999999886410 01222 34577888999999
Q ss_pred CHHHHHHHHHhcC
Q 008708 461 ERNEANELLGNFN 473 (557)
Q Consensus 461 ~~~~a~~~~~~~~ 473 (557)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998764
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=1.5e-06 Score=78.43 Aligned_cols=134 Identities=8% Similarity=-0.104 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN--VITYGTLIKG 385 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~ 385 (557)
....+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 44556677888999999999998887643 443366666678889999999999998554431 111 2367788999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~ 241 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEP 241 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH
Confidence 9999999999999999885432243 34667777888899999999999999988 45653
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.54 E-value=6.5e-05 Score=70.09 Aligned_cols=178 Identities=8% Similarity=0.028 Sum_probs=116.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
......+..++|++++++++..++. +..+|+.--.++...| .+++++++++.++... +.+..+|+.-..++...
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHh
Confidence 3334455667899999999887655 6777777777777788 5899999999998632 56677888776666666
Q ss_pred -C-CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------
Q 008708 218 -G-GYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE-------- 287 (557)
Q Consensus 218 -g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------- 287 (557)
+ ++++++.+++++.+.. +.+..+|+...-.+.+.|.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~d---------------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD---------------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC---------------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred cCCChHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHhccccccchhhH
Confidence 6 7777777777777642 12444444433333333333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM-------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
.++++.++++++.. +-|...|+.....+.+.+. ++++++.+++..... +-|...|+.+-..+.+.|+
T Consensus 184 ~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 184 GSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 37888888887764 4567777777777666665 566777776666543 3356666665555555544
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=2.1e-06 Score=81.32 Aligned_cols=153 Identities=16% Similarity=0.036 Sum_probs=120.8
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHH
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--------------VVSHTALM 138 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li 138 (557)
+.+++.|.+.++...... +.+...+..+...|.+.|++++|...|++..+...... ..+|..+.
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 445555555444333222 12356788899999999999999999999988742211 58999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
.+|.+.|++++|+..+++.++..+. +..+|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544 78899999999999999999999999998643 456788999999999999
Q ss_pred CHHHH-HHHHHHHHH
Q 008708 219 GYEKA-RKLFALMAE 232 (557)
Q Consensus 219 ~~~~A-~~~~~~~~~ 232 (557)
+.++| ...|..|..
T Consensus 279 ~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 279 RQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 99988 456666654
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=4.2e-06 Score=65.06 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456666667777777777777777776653 4466677777777777777777777777777642 3356677777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
+...|++++|...+++..+.. +.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 777788888888777777632 22334444433
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=2.3e-06 Score=81.04 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
.+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 455566666666666666666666666543 4455666666666666666666666666666542 23455566666666
Q ss_pred HhcCChhHH-HHHHHHH
Q 008708 422 GKNKDFDSA-VVWYKEM 437 (557)
Q Consensus 422 ~~~g~~~~A-~~~~~~m 437 (557)
.+.|+.++| ..+++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666666665 3344444
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=5.8e-07 Score=73.82 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
+...+..+...+...|++++|+..|++.....+. +...|..+..++...|++++|+..|++++... +.+...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHH
Confidence 3445555566666666666666666666554332 55566666666666666666666666665432 234455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 210 MIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665543
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=7e-07 Score=75.90 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=102.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCh--h
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA-YGKNKDF--D 428 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 428 (557)
...|++++|...+++..... +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45688999999999988764 6688999999999999999999999999998753 4467888888888 7899998 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+|...++++++.. +.+...+..+...+...|++++|...++++....+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999998843 445678888999999999999999999998755543
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=2.5e-05 Score=72.52 Aligned_cols=183 Identities=10% Similarity=0.035 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 008708 287 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD-MEGAEKF 363 (557)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 363 (557)
+++++.+++.+.... +.+..+|+.-...+...+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555442 334455555555555555 3566666666665543 3355555555555555555 4566666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKV--------------NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN----- 424 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----- 424 (557)
+..+.+.. +-|...|+.....+.+. +.++++++.+.+.+... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 66665544 44555555555444443 33556666666666542 33455555444444433
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCHH-HHHHHH---HHHhhcCCHHHHHHHHHhcCCC
Q 008708 425 ------KDFDSAVVWYKEMESCGFPPDQK-AKNILL---SLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 425 ------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~---~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
+.++++++.++++.+ +.|+.. .+..++ .+....|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 345666666666666 345441 111111 1222355666666666665543
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=1.5e-05 Score=71.83 Aligned_cols=191 Identities=8% Similarity=-0.068 Sum_probs=124.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHh------------CCCC-----
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTAL-------MEAYGRGGRYKNAEAIFRRMQS------------SGPR----- 163 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~----- 163 (557)
..++...|.+.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788899999999988875 3467888888 5666666666666666665544 1110
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008708 164 ---PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 240 (557)
Q Consensus 164 ---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 240 (557)
--......+...+...|++++|.++|..+.. ..|+......+...+.+.+++++|+..|+..... |+..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~ 168 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKF 168 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcc
Confidence 0022344556677888888888888887753 1344336666677888888888888888644332 0000
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Q 008708 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--HKAYNILLDAFAI 318 (557)
Q Consensus 241 ~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 318 (557)
.....+..+..++...|++++|+..|++.......|. .........++.+
T Consensus 169 ----------------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 169 ----------------------------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 0123556677778888888888888887764332143 3355566667777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 008708 319 SGMVDQARTVFKCMRRD 335 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~ 335 (557)
.|+.++|..+|+++...
T Consensus 221 lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 88888888888877765
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.46 E-value=2e-06 Score=68.45 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI--KPN----QTIFT 415 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~ 415 (557)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776653 45667777777777778888888888777765321 112 56677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
.+..++...|++++|...++++.+ ..|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 777778888888888888888777 34566555554443
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.7e-06 Score=70.40 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344555566666777777777777666653 4566666677777777777777777777766543 33456666666777
Q ss_pred HhcCChhHHHHHHHHHHh
Q 008708 422 GKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~ 439 (557)
...|++++|...|+..++
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776665
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=1.2e-05 Score=64.70 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008708 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 418 (557)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 418 (557)
.+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566666666667777777777776666553 4456666667777777777777777777766543 33466666677
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 008708 419 DAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.++...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777776654
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=1.4e-05 Score=62.00 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 33444444445555555555555444332 2234445555555555555555555555554432 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 008708 388 KVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~ 405 (557)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555543
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=5.9e-06 Score=69.08 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=82.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|+..|++.++..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 35567788888889999999999999888764 347888888888999999999999999888876543 6778888888
Q ss_pred HHHHcCCHHHHHHHHHHhHhcc
Q 008708 175 LFVEANKFKEAEEVFMTLLDEE 196 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~ 196 (557)
++...|++++|...|+++++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8889999999999998888643
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=0.00042 Score=64.35 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=82.5
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 108 KQGDFN-KAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR----------YKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 108 ~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
+.|.+. +|+++++.+...+ |.+..+|+.--.++...+. +++++.+++.+....++ +..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445554 7888888888775 3356677765444444333 57788888888776554 777777776666
Q ss_pred HHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC
Q 008708 177 VEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG-YEKARKLFALMAERG 234 (557)
Q Consensus 177 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 234 (557)
...+ .+++++.+++.+++.+ +.|..+|+.-.-++...|. ++++++.++.+.+..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d----prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hccCcccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 6777 3788888888887643 5566777776666667776 577777777777653
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.1e-05 Score=63.77 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44555556666666666666666665543 3355666666666667777777777777666653 445666667777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~ 404 (557)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777777665
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=4.4e-06 Score=66.38 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTYQI 171 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~~~~~ 171 (557)
.+..+...+.+.|++++|++.|++..+.. |.+..+|+.+..+|...|++++|++.+++.++..+. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556666777777777777777766653 335666666777777777777777777666543211 11 124455
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666553
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.7e-05 Score=64.62 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 415 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (557)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566666777777777777777777777664 344 5667777777777777777777777776642 33566677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSL 455 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 455 (557)
.+..++...|++++|...+++..+. .| +...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 7777777777777777777777763 34 33444444333
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=8e-06 Score=68.24 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667788888889999999999999888764 5578888899999999999999999999988753 445888889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
+|...|++++|...|++.++
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999887
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=7.2e-06 Score=71.01 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----------------VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
.+..+...+...|++++|+..|++..... +.+ ...+..+..+|...|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34444555555555555555555555432 111 2566677777777777777777777777642
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 466 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 466 (557)
+.+...+..+..+|...|++++|...|++.++.. +.+...+..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777788888877777777632 334456666666666666665555
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=5.4e-06 Score=63.75 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDA 420 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~ 420 (557)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555555555555555555555442 3345555555555555666666666665555532 22 35555555555
Q ss_pred HHhc-CChhHHHHHHHHHHh
Q 008708 421 YGKN-KDFDSAVVWYKEMES 439 (557)
Q Consensus 421 ~~~~-g~~~~A~~~~~~m~~ 439 (557)
+.+. |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 666666666655554
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=1e-05 Score=65.05 Aligned_cols=100 Identities=12% Similarity=-0.041 Sum_probs=75.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 356677778888888888888888888877664 345777888888888888888888888887776443 667777777
Q ss_pred HHHHHcCCHHHHHHHHHHhHhc
Q 008708 174 KLFVEANKFKEAEEVFMTLLDE 195 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~ 195 (557)
.++...|++++|...|.++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888877753
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=1.1e-05 Score=69.74 Aligned_cols=95 Identities=16% Similarity=0.006 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+..+..+|...|++++|+..+++..... +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 566777777778888888888888777654 5567777788888888888888888888877642 33566677777777
Q ss_pred HhcCChhHHH-HHHHHHH
Q 008708 422 GKNKDFDSAV-VWYKEME 438 (557)
Q Consensus 422 ~~~g~~~~A~-~~~~~m~ 438 (557)
...++.+++. ..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6666665555 4444443
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=3.6e-06 Score=64.81 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP--DQKAKNIL 452 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l 452 (557)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567788899999999999999999998753 4568889999999999999999999999999853 33 57889999
Q ss_pred HHHHhhc-CCHHHHHHHHHhcCCCCCC
Q 008708 453 LSLAKTA-DERNEANELLGNFNHPNNE 478 (557)
Q Consensus 453 ~~~~~~~-g~~~~a~~~~~~~~~~~~~ 478 (557)
..++... |++++|.+.++++....+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999998765553
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.32 E-value=7.2e-06 Score=66.64 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++.....+. ++..+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3445555556666666666666555543 234555555566666666666666666665554332 44455555555556
Q ss_pred cCCHHHHHHHHHHhHh
Q 008708 179 ANKFKEAEEVFMTLLD 194 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~ 194 (557)
.|++++|...|+.+++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666555553
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=6e-06 Score=64.97 Aligned_cols=92 Identities=8% Similarity=0.012 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 425 (557)
.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33444555555555555555555443 3345555555555555555555555555555432 223445555555555555
Q ss_pred ChhHHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMES 439 (557)
Q Consensus 426 ~~~~A~~~~~~m~~ 439 (557)
++++|+..++++++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=3.8e-05 Score=62.43 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 306 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGT 381 (557)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (557)
...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|+..+++..... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344444445555555555555555555443 222 3445555555666666666666666555542 334555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666666666666553
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.28 E-value=9.2e-06 Score=64.47 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF--VPN----VITYGTL 382 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 382 (557)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++..... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444322 22344444444455555555555555554443210 111 4455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
..++...|++++|.+.|+++.+. .|+......+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66666666666666666665553 2344444333
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=1.1e-05 Score=63.40 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34566677777888888888888777654 346777777777788888888888888777776443 5667777777777
Q ss_pred HcCCHHHHHHHHHHhHh
Q 008708 178 EANKFKEAEEVFMTLLD 194 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~ 194 (557)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77788888877777764
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=8.9e-05 Score=72.90 Aligned_cols=194 Identities=9% Similarity=-0.005 Sum_probs=101.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH
Q 008708 279 NAYGKARREEEALAVFEEMLDAGVRPT----------------HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDI 341 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 341 (557)
..+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+++..+..... .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344556666666666666655321110 11345566666666666666666665543210 1111
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC--
Q 008708 342 ----CSYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIK-- 408 (557)
Q Consensus 342 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~-- 408 (557)
.+.+.+...+...|+++.|..+++.... .+..+ -..++..++..|...|++++|..+++++... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1222233333445666666666665543 12122 2345666677777777777777777665531 111
Q ss_pred c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 409 P-NQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPD----QKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 409 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
+ ...++..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 1345666666777777777777776665431 11111 123444455566667777766655443
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=1.6e-05 Score=66.20 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++.++ +.|+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 34567778888888888888888888887753 44577788888888888888888888888877 34544
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=4.4e-05 Score=60.47 Aligned_cols=92 Identities=8% Similarity=-0.031 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHH
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMD 419 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 419 (557)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+++.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 34455666667777777776666542 2222 455666667777777777777777766542 222 455666666
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
++...|++++|...++++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777766
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.2e-05 Score=66.44 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=101.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C----C
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-PS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-P----S 165 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~----~ 165 (557)
...+..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++....... + .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346778888999999999999999887653100 12 247888889999999999999999987653111 1 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 166 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-P-LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..++..+...+...|++++|.+.+++.++.... + ......++..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777888899999999999999988753111 1 111235677888999999999999999988765
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.5e-05 Score=77.34 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN---------------VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
..+..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345555556666666666666666655532 112 5778888899999999999999999988753
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHH-HHHhcC
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANE-LLGNFN 473 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 473 (557)
+.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..+..++.+.++.+++.+ +++++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888889999999999999999999987 4454 4577778888888888887764 445554
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=0.00012 Score=71.97 Aligned_cols=212 Identities=10% Similarity=0.020 Sum_probs=128.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008708 211 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 290 (557)
Q Consensus 211 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 290 (557)
...+.+.|++++|++.|..+.+........... .+........ ....+..++..|...|++++|
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-----ASVDDKRRNE-----------QETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-----SSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-----HHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHH
Confidence 456678899999999998888753221110000 0000000000 112356677888888888888
Q ss_pred HHHHHHHHHcCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008708 291 LAVFEEMLDAGV-RPTH----KAYNILLDAFAISGMVDQARTVFKCMRR----DRCSP-DICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 291 ~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A 360 (557)
.+.+..+...-- .++. .+.+.+...+...|+++.|..+++.... .+..+ -..++..+...|...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 888877654211 1111 1223333344456778888888776643 22222 245677788888888888888
Q ss_pred HHHHHHHHhC--CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCChhH
Q 008708 361 EKFFRRLKQD--GF---VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 361 ~~~~~~m~~~--~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~ 429 (557)
..+++++... +. +....++..++..|...|++++|..++++.... +.++. ...+..++..+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888876542 11 112356777888888888888888888877631 11111 3456666677778888888
Q ss_pred HHHHHHHHH
Q 008708 430 AVVWYKEME 438 (557)
Q Consensus 430 A~~~~~~m~ 438 (557)
|...|.+..
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776664
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=2.4e-05 Score=75.01 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777777778888888888888877653 3356777777778888888888888888777632 234556666666
Q ss_pred HHhhcCCHHHHHH
Q 008708 455 LAKTADERNEANE 467 (557)
Q Consensus 455 ~~~~~g~~~~a~~ 467 (557)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.9e-05 Score=65.31 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQD----GFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKP-NQTI 413 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 413 (557)
+..+...+...|++++|...+++.... +.++ ...++..+...+...|++++|...+++..+. +..+ ....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 344444444455555555554443321 0000 1234445555555566666666555555421 1011 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+..+...+...|++++|...+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4555555556666666666665554
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=4.4e-06 Score=65.27 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=51.5
Q ss_pred cCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKG--YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 186 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 186 (557)
.|++++|+..|++..+.+ -+.+..+|..+..+|...|++++|+..|++..+..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466666777776666643 1223456666666677777777777777766665433 4566666666666777777777
Q ss_pred HHHHHhHh
Q 008708 187 EVFMTLLD 194 (557)
Q Consensus 187 ~~~~~~~~ 194 (557)
..+++++.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666664
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=8.4e-05 Score=58.79 Aligned_cols=95 Identities=19% Similarity=0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV---VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIIL 173 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll 173 (557)
+..+...+.+.|++++|...|+.+.+.. +.+. .++..+..++...|++++|+..|++.....+... ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4456667777777778877777777653 1222 4666777777777777777777777766543311 55566677
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 008708 174 KLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~ 194 (557)
.++...|++++|...|+.+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777765
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=7.6e-06 Score=81.47 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=78.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.++++.+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777777777653 4457777777777778888888888887777653 335677777777777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HhhcCCHHHHHHHHHh
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSL--AKTADERNEANELLGN 471 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 471 (557)
+|...++++.+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888887777632 2233344444444 6677777777777773
No 184
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=2.9e-05 Score=76.82 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCC
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETN 251 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 251 (557)
+...|++++|+.++++.++.....+.++ ..+++.|+.+|...|++++|+.++++.+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------- 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------------- 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------
Confidence 5578999999999999987655555554 36789999999999999999999977654
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHHcCCHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA-----GVR-PT-HKAYNILLDAFAISGMVDQ 324 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~ 324 (557)
+++.......+-...+++.|...|...|++++|..++++.++. |.. |+ ..+...+..++...+.+++
T Consensus 380 ------i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 380 ------GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp ------HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 2333332222223567899999999999999999999887541 211 11 2244555566666777777
Q ss_pred HHHHHHHHHh
Q 008708 325 ARTVFKCMRR 334 (557)
Q Consensus 325 A~~~~~~~~~ 334 (557)
|..++.++.+
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=4.7e-05 Score=75.39 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567778888888888888888888887764 5577888888888888888888888888888753 3345677777777
Q ss_pred HHhcCChhHHHH-HHHHHH
Q 008708 421 YGKNKDFDSAVV-WYKEME 438 (557)
Q Consensus 421 ~~~~g~~~~A~~-~~~~m~ 438 (557)
+.+.|+.++|.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 877777776653 444443
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.2e-05 Score=79.97 Aligned_cols=124 Identities=17% Similarity=0.034 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+..+. +..++..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344556678899999999999988864 446889999999999999999999999999987544 788899999999999
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM--YKKAGGYEKARKLFAL 229 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 229 (557)
|++++|++.|+++++.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 88 g~~~eA~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHS----TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999998743 2233345555555 8888999999999873
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=5.4e-05 Score=72.48 Aligned_cols=122 Identities=8% Similarity=0.020 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNK----------------KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 161 (557)
.+..+...+.+.|++++|++.|++..+ .. +.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 467788889999999999999998876 21 2245678888888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 162 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 225 (557)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 225 (557)
+. +...+..+..+|...|++++|++.|+++++.. +.+...+..+..++...++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67778888888888888888888888887642 3456667777777777776666543
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=2.2e-05 Score=77.74 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=98.8
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHH
Q 008708 140 AYGRGGRYKNAEAIFRRMQSS-----GPR-P-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFH 208 (557)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~-----~~~-~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~ 208 (557)
.+...|++++|+.++++.++. |.. | ...+++.|..+|...|++++|+.+++++++.....+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887652 211 2 346788999999999999999999999886432222232 36789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008708 209 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 288 (557)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (557)
.|...|...|++++|+.++++..+ +++.......+....+...+..++...+.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~-------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA-------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999977654 3333332222222345566777888888999
Q ss_pred HHHHHHHHHHH
Q 008708 289 EALAVFEEMLD 299 (557)
Q Consensus 289 ~A~~~~~~~~~ 299 (557)
+|..+|..+++
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=7.9e-06 Score=63.79 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 008708 354 ASDMEGAEKFFRRLKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234456666666666666666666666666542 334556666666666666666666
Q ss_pred HHHHHHHh
Q 008708 432 VWYKEMES 439 (557)
Q Consensus 432 ~~~~~m~~ 439 (557)
..+++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=0.00011 Score=61.11 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+...|..+..+|.+.|++++|+..+++.+... +.+...|..+..+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34567777778888888888888888877764 556777888888888888888888888887764
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.7e-05 Score=75.08 Aligned_cols=149 Identities=9% Similarity=0.052 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
..+..+...+.+.|++++|...|++.... .|+... +...++..++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666666667777777777766543 222211 112222333222211 12677888889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HhhcCCHHH
Q 008708 387 AKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSL-AKTADERNE 464 (557)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~-~~~~g~~~~ 464 (557)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++ +.|+. ..+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753 34678888889999999999999999998876 44544 344444444 334566777
Q ss_pred HHHHHHhcCCCCC
Q 008708 465 ANELLGNFNHPNN 477 (557)
Q Consensus 465 a~~~~~~~~~~~~ 477 (557)
+...++++....+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7788877765443
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=0.00013 Score=59.35 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFV-P-----NV-----ITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GI 407 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~ 407 (557)
+......+.+.|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555666666666666665553211 0 22 26777777777777777777777777653 11
Q ss_pred CcC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 408 KPN-QTIF----TTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 408 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|+ ...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344 4566 6777777777777777777777764
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=0.00016 Score=58.67 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhc--cCCCCCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDE--EKSPLKP-DQKMF----HMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.|..+..++.+.|++++|+..+++.++. ....+.| +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666667776666666666642 0001133 45667 8888888899999999999888875
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.93 E-value=3e-05 Score=73.43 Aligned_cols=129 Identities=11% Similarity=0.018 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV------------------SHTALMEAYGRGGRYKNAEAIFRRMQ 158 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~------------------~~~~li~~~~~~g~~~~A~~~~~~m~ 158 (557)
..+..+...+.+.|++++|...|++..... |+.. +|..+..+|.+.|++++|+..+++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 446678888889999999999999987652 4433 66667777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 008708 159 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM-YKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 232 (557)
+..+ .+...|..+..+|...|++++|+..|+++++.. +.+..++..+... ....+..+.+...|..+..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA----PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6533 256666777777777777777777777775321 2233344444443 2233455555666655554
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00076 Score=68.37 Aligned_cols=174 Identities=10% Similarity=-0.001 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM----------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 355 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (557)
..++|++.++++.... +-+..+|+.-..++...|+ +++++..++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467889999888764 3455667766666666666 899999999998765 457888988888888889
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 008708 356 --DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-------- 424 (557)
Q Consensus 356 --~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------- 424 (557)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++++.+.++++.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999876 668888998888888889 8999999999998764 45788888877776653
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 008708 425 ------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 464 (557)
Q Consensus 425 ------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 464 (557)
+.++++++++++++... +-+...|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998742 4456788888888887776443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.00056 Score=54.91 Aligned_cols=88 Identities=13% Similarity=-0.021 Sum_probs=40.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| ++..+..+...|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 333333344444444444444432 33444444444444 445555555555554433 33444444444444
Q ss_pred ----cCChhHHHHHHHHHHhCC
Q 008708 424 ----NKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 424 ----~g~~~~A~~~~~~m~~~~ 441 (557)
.+++++|..+|++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554433
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.83 E-value=0.00065 Score=54.52 Aligned_cols=110 Identities=10% Similarity=-0.035 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAE 361 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 361 (557)
++++|+.+|++..+.| .+... |...|...+.+++|..+|++..+.+ ++..+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22322 5555555556666666666666653 55666666666666 56777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 406 (557)
..|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766654 45566666666666 667777777777777655
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=0.00098 Score=67.57 Aligned_cols=173 Identities=10% Similarity=0.004 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR----------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG- 320 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 320 (557)
.++|.+.++.+....+. +..+|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 35566666666665433 56667776666666666 899999999998764 457778888888888888
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------
Q 008708 321 -MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------- 389 (557)
Q Consensus 321 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------- 389 (557)
++++++..++++.+.. +.+..+|+.-..++.+.| .++++++.+.++.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999998865 457888988888888888 8999999999988875 66888888888777764
Q ss_pred -----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 390 -----NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 390 -----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
+.++++++.+.+++... +-+...|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999988753 4568889888888888777444
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=5.6e-05 Score=61.29 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=65.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL----------EKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445666666666666654 55666666666666666543 47777777777643 234667777777777
Q ss_pred hc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 423 KN-----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 423 ~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
.. |++++|+..|+++++ +.|+...|...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 65 478888888888887 56776655554443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=3.2e-05 Score=59.33 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++.++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34556666666777777777777777766542 33566666677777777777777777777766
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.0002 Score=55.36 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 008708 114 KAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLL 193 (557)
Q Consensus 114 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 193 (557)
.|+..|++..+.. +.+...|..+...|...|++++|+..|++.....+. +...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555543 334556666666666666666666666666554332 45555666666666666666666666655
Q ss_pred h
Q 008708 194 D 194 (557)
Q Consensus 194 ~ 194 (557)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0002 Score=54.66 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-------HH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-------QT 412 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~ 412 (557)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34566677777777888888888888777654 556777777888888888888888888887764 333 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYK 435 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~ 435 (557)
.+..+..++...|+++.|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555566666666555544443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.63 E-value=0.00042 Score=53.49 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|+..|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 3455556666666666666666666666665532 23355556666666666666666666666554
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00073 Score=49.24 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444443321 12233444444444444444444444444443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.59 E-value=0.00069 Score=49.35 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678888899999999999999999998864 5678889999999999999999999999998753 345777777777
Q ss_pred HHHhcC
Q 008708 420 AYGKNK 425 (557)
Q Consensus 420 ~~~~~g 425 (557)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.53 E-value=0.00027 Score=57.24 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--
Q 008708 322 VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD----------MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV-- 389 (557)
Q Consensus 322 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-- 389 (557)
+++|+..++...+.. +.+...|..+..++...++ +++|+..|++.++.. +.+...|..+..+|...
T Consensus 18 feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 18 FEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcc
Confidence 444444444444332 2244444444444444433 347777777776654 44566677777777665
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 390 ---------NNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 390 ---------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
|++++|++.|+++++. .|+...|...+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4788888888888874 566555544444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.37 E-value=0.00091 Score=50.05 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555555543 3344455555555555566666555555554
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.35 E-value=0.00069 Score=50.75 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 157 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 157 (557)
+..+..+..+|.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444555555555554444432 123344444444444444444444444444
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.00081 Score=65.32 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 253 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 253 (557)
..|++++|+.++++.++....-+.|+ ..+++.|..+|...|++++|+.++++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 35789999999999987655555555 36789999999999999999999977664
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 254 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
+++.......+-...+++.|...|...|++++|..++++.++
T Consensus 369 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 ----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 233333222222345789999999999999999999998764
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.0025 Score=61.93 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=78.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 247 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 247 (557)
.+..+.+.|++++|+.+++++++.....+.|+ ..+++.|+.+|...|++++|+.++++++.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~--------------- 357 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME--------------- 357 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------
Confidence 34556788999999999999997655555555 35788899999999999999999977664
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 248 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
+++.......+-...+++.|...|...|++++|..++++..+
T Consensus 358 ----------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 ----------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233333222222346788999999999999999999988754
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0023 Score=62.15 Aligned_cols=87 Identities=6% Similarity=-0.072 Sum_probs=62.7
Q ss_pred HcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCc-CHHHHHHHH
Q 008708 353 NASDMEGAEKFFRRLKQD---GFVP----NVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NG-IKP-NQTIFTTIM 418 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~~~~l~ 418 (557)
..|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++++.++ .| -.| ...+|+.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888888776542 1122 235688888888888999998888888774 12 122 256788888
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 008708 419 DAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999998888764
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0051 Score=59.79 Aligned_cols=92 Identities=7% Similarity=-0.032 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCc-CHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDG---FVP----NVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NG-IKP-NQTI 413 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~---~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~ 413 (557)
+..+.+.|++++|+.++++.++.. +.| ...+++.|+.+|...|++++|+.+++++++ .| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567788888888888887531 122 245688888999999999999999988774 12 112 2567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
++.+...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88889999999999999999988764
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.93 E-value=0.052 Score=50.59 Aligned_cols=136 Identities=12% Similarity=0.040 Sum_probs=85.9
Q ss_pred CHhhHHHHH--HHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--ChHHH---HHHHHHHHh-C
Q 008708 95 NEMDFLMLI--TAYGKQG---DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR---GG--RYKNA---EAIFRRMQS-S 160 (557)
Q Consensus 95 ~~~~~~~l~--~~~~~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g--~~~~A---~~~~~~m~~-~ 160 (557)
+...|...+ ..+...+ ...+|..+|++..+.. |-....|..+..+|.. .+ ..... ...++.... .
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 344444444 3333333 3478899999988874 2234555554444431 11 11111 111221111 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008708 161 GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ 236 (557)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 236 (557)
..+.++.+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|.+.|++....++.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 13457888888877777789999999999999864 367777878888899999999999999988876543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.88 E-value=0.0022 Score=47.59 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.+..+...|++++|...|+++.+.. +.+.. .|..+..+|...|++++|...|++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445556666666666666666542 23445 666666666666666666666666665
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.84 E-value=0.024 Score=52.89 Aligned_cols=76 Identities=8% Similarity=-0.070 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 373 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 6678888888777777899999999999988764 7777777888888889999999999988887 56777765543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.83 E-value=0.0032 Score=46.68 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 163 (557)
.....+.+.|++++|.+.|++..+.. +.+.. .|..+..+|...|++++|+..|++..+..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 35566777888888888888877764 33566 7788888888888888888888888776443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.23 Score=52.82 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=69.2
Q ss_pred HHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 104 TAYGKQGDFNKAEK-VLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 104 ~~~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
......+++++|.+ ++..+ |+......++..+.+.|.+++|+++.+ +.. .-+......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 33445788888876 54221 112334777788888888888887653 221 113345678999
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 669 ~~A~~~~~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 669 TLARDLLTDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 9998886443 466789999999999999999999887764
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.55 E-value=0.019 Score=43.03 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=54.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008708 93 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG------YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 162 (557)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 162 (557)
.++...+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|+..+++..+..+
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3567788899999999999999999998876531 123567788888888888888888888888877543
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.023 Score=45.37 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChhHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
...+.+-|.+....+ +++..+...+..++++.+ ++++++.+|+...+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 455666777666666 578888888888999888 6679999999988754 24 3455666677889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHH
Q 008708 432 VWYKEMESCGFPPDQKAKN 450 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~ 450 (557)
++++.+++ +.|+..--.
T Consensus 92 ~y~~~lL~--ieP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAK 108 (152)
T ss_dssp HHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHh--cCCCCHHHH
Confidence 99999998 677654333
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.31 E-value=0.079 Score=38.57 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 112 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 112 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
.++|..+|++.++.. +.++.++..+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432 223444444444444444444444444444443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.18 E-value=0.032 Score=40.71 Aligned_cols=67 Identities=6% Similarity=-0.007 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 373 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
+.|...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777765544 577777777777653 345667777777777777777777777777764
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.06 E-value=0.061 Score=40.20 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN------GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
+..-+..++..+.+.|+++.|...|+.+.+. .-.+...++..+..++.+.|+++.|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3444555666667777777777777666542 0123356667777777777777777777777766 34543
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.05 E-value=0.55 Score=41.99 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhc-C
Q 008708 357 MEGAEKFFRRLKQDGFVPN---VITYGTLIKGYAKV-----NNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKN-K 425 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~-g 425 (557)
...|...+++..+. .|+ ...|..|+..|.+. |+.++|.+.|++.++. .| +..++..+.+.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 56788888888875 465 56899999999994 9999999999999985 45 378888888888884 9
Q ss_pred ChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMESCGFP--PDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 426 ~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+.++|.+.+++.+..... |+....+.+ .-++|..++.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~ 294 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAH 294 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHH
Confidence 999999999999985544 443333332 34455555544
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.94 E-value=0.11 Score=55.31 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 275 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 354 (557)
Q Consensus 275 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (557)
..++..+.+.|.++.|+++.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666777777777776553211 1123345678888887775433 3667788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 008708 355 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 434 (557)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 434 (557)
|+++.|++.|.++.. |..+...|...|+.+...++-+.....|. ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887642 22344444555666555555544444331 222333344455555555555
Q ss_pred HHH
Q 008708 435 KEM 437 (557)
Q Consensus 435 ~~m 437 (557)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.6 Score=38.26 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=90.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 393 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 393 (557)
......|+++.|.++.+.+. +...|..|.......|+++-|+..|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34457888888888877662 677899999999999999999998886542 334555667778887
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
...++-+.....| -++....++.-.|+++++.+++.+.-. +.-.+-.....|-.+.|.++.+.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 7776666665554 134455566678999999988865532 1122233455788888888887763
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.66 E-value=0.057 Score=43.16 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 113 NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG---RYKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 113 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
..+.+-|.+....| +++..+.-.+..++++.+ ++++++.+|+...+.+ +......+-.+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555544 256666666666666666 4456777777666643 111234444455566677777777777
Q ss_pred HHHhHhc
Q 008708 189 FMTLLDE 195 (557)
Q Consensus 189 ~~~~~~~ 195 (557)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777653
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.54 Score=38.57 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=61.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 103 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34445667777777776654 2566777777777777777777777776521 33444455556666
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 229 (557)
+.-.++-+.....+ -++.....+...|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g---------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc---------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66555544443211 134444455566777777776644
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.40 E-value=0.67 Score=35.71 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
..+...++.+...|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444455555555555555555554322 245555555555566666666666666665555553
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.70 E-value=1.1 Score=34.55 Aligned_cols=141 Identities=10% Similarity=0.082 Sum_probs=89.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
.-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+ -.| ....|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHH
Confidence 4457777777777776653 2555566666655555555555555554432 111 12345555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 008708 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPN 476 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (557)
..+-.+ .-+....+..++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.+
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 544443 235566777777888888888888888886542 47788888888888888888888888888776665
Q ss_pred CCC
Q 008708 477 NEP 479 (557)
Q Consensus 477 ~~~ 479 (557)
...
T Consensus 156 ~kE 158 (172)
T 1wy6_A 156 EKE 158 (172)
T ss_dssp CHH
T ss_pred hHH
Confidence 543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.70 E-value=0.11 Score=46.31 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHH
Q 008708 76 WNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK-----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG-GRYKN 149 (557)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~ 149 (557)
...|...++++.+..+--.+...|..|...|.+ .|+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344445555555544211124455566666666 366666666666666553111355555555555553 66666
Q ss_pred HHHHHHHHHhCCCC
Q 008708 150 AEAIFRRMQSSGPR 163 (557)
Q Consensus 150 A~~~~~~m~~~~~~ 163 (557)
+.+.+++.+...+.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666655444
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.22 E-value=0.37 Score=36.94 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChhHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK---MMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 430 (557)
....+.+-|.+....| .++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344555555544444 3666666666667776665444 677777766543 23 223334455567777777777
Q ss_pred HHHHHHHHhCCCCCCH
Q 008708 431 VVWYKEMESCGFPPDQ 446 (557)
Q Consensus 431 ~~~~~~m~~~~~~p~~ 446 (557)
.++++.+++ +.|+.
T Consensus 94 ~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHH--hCCCC
Confidence 777777776 45543
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.74 E-value=0.56 Score=37.00 Aligned_cols=105 Identities=10% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHH---HHHHHcCCHHHHHHHHHHhHhc
Q 008708 129 PSVVSHTALMEAYGRGGRY------KNAEAIFRRMQSSGPRPSAL----TYQIIL---KLFVEANKFKEAEEVFMTLLDE 195 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~----~~~~ll---~~~~~~g~~~~A~~~~~~~~~~ 195 (557)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+- ..+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3556666666666555666 6666666666553 333311 111110 0123447888999999988764
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008708 196 EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS 238 (557)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 238 (557)
...+ ..+|......-.++|++..|.+++......+..|.
T Consensus 90 -hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 -CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 2233 77788888888889999999999998888765543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.31 E-value=0.48 Score=36.30 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 113 NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN---AEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 113 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
..+.+-|......| .++..+--.+..++++..+... ++.+++.+.+.+ +.......-.+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444444433 2555665556666666655444 666666665543 111223333444566666666666666
Q ss_pred HHHhHhc
Q 008708 189 FMTLLDE 195 (557)
Q Consensus 189 ~~~~~~~ 195 (557)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666653
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.27 E-value=0.97 Score=35.68 Aligned_cols=100 Identities=7% Similarity=0.070 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHHHHCC
Q 008708 340 DICSYTTMLSAYVNASDM------EGAEKFFRRLKQDGFVPNVI----TYGTLIK---GYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
|..+|-..+...-+.|++ ++..++|++.... +||+.. .|-.+-- .+...++.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555555555555555665 5666666666553 344321 0111100 1123478888888888886542
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
-.- ...|.....--.+.|++..|.+++...+..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 222 6777777777778888888888888888754
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.05 E-value=5.6 Score=41.17 Aligned_cols=126 Identities=16% Similarity=0.045 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-ChHHHHHHHHHHHh-------CCCCCCHH-
Q 008708 100 LMLITAYGKQGD-FNKAEKVLSFMNKKGYAPSVVSH--TALMEAYGRGG-RYKNAEAIFRRMQS-------SGPRPSAL- 167 (557)
Q Consensus 100 ~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~-------~~~~~~~~- 167 (557)
..|+..+...|+ ++.|..+|+++.... |....+ ..++..+...+ +--+|.+++.+..+ .-...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 456666666677 588999999998863 433332 23333333332 22345555544432 11111211
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 168 ---------TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 168 ---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
....-...|...|+++.|+++-++++.. .+.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234567889999999999999853 35667899999999999999999999998874
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.80 E-value=2.3 Score=40.40 Aligned_cols=54 Identities=9% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
+..+...|+++++...+..+.... +-+...|..++.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444445555544444444321 233444445555555555555555444443
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.59 E-value=2.4 Score=40.28 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NGIKPNQTIFT 415 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 415 (557)
...++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|++.|+...+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456778888999999999999888764 77888999999999999999999999988763 48888776543
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.02 E-value=1.1e-05 Score=76.37 Aligned_cols=260 Identities=11% Similarity=0.113 Sum_probs=159.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
.+.+|..|..+..+.|++.+|++-|-+ . .|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 467889999999999999999887622 2 2666789999999999999999998876665533 3344457888
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCC
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETN 251 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~ 251 (557)
+|++.++..+-++++ ..|+..-...+++-|...|.++.|.-+|..+... ..|-.. .++
T Consensus 125 ayAk~~rL~elEefl----------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~ 185 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGE 185 (624)
T ss_dssp HHHTSCSSSTTTSTT----------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSG
T ss_pred HHHhhCcHHHHHHHH----------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHH
Confidence 999999977654432 2466666677889999999999998877544321 111111 122
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKC 331 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 331 (557)
+..|.+. .++ .-++.||..+-.+|...+.+..|.-.--.++-. ++ -...++..|...|.+++-+.+++.
T Consensus 186 yq~AVda---ArK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDG---ARK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTT---TTT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHH---HHh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2222211 111 125567777777777777776655443333311 11 123355667777777777777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 332 MRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (557)
-.... ......|+-|.-.|++- ++++..+.++..... +++ -++++|.+...|.++.-+|..
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhc
Confidence 66321 34566666666666654 444444444432221 222 245556555566665555543
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.94 E-value=17 Score=35.06 Aligned_cols=94 Identities=6% Similarity=0.082 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcC--HHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQD--GFVPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN--QTI 413 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~ 413 (557)
..|...|...|++.+|.+++..+... +..+. ...+...+..|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666655421 11111 12344455556666666666666655431 111122 233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
|...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555666666655555543
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.89 E-value=7.5 Score=42.97 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=116.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C---------------
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----R--------------- 336 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--------------- 336 (557)
.++..+.+.+..+.+.++..-. +.++...-.+..+|...|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566667776666544322 335555556677888999999999999765211 0
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 008708 337 ---CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 409 (557)
Q Consensus 337 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 409 (557)
...-..-|..++..+.+.+.++.+.++-+...+...+.+. ..|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0112235677888888899999998888877654222222 2577888999999999999999888876533
Q ss_pred CHHHHHHHHHHHHhcCChhH------------HHHHHHHH-HhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 410 NQTIFTTIMDAYGKNKDFDS------------AVVWYKEM-ESC-GFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 410 ~~~~~~~l~~~~~~~g~~~~------------A~~~~~~m-~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
-...+..++..++..|..+. ..+++..- ... .....+..|..|.......|++..|-.++
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 35667777776666655443 33333221 111 11222345666666666667766654443
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.60 E-value=1.9 Score=34.78 Aligned_cols=121 Identities=9% Similarity=0.037 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKG-YAPSV-------VSHTALMEAYGRGGRYKNAEAIFRRMQSSG--PRPSA 166 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~ 166 (557)
..+..-+..+...|.++.|+-+.+.+.... ..|++ .++..+..++...|++..|...|++.+... +.-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445566777777777777777766644321 12221 245556667777777777777777754321 11111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 167 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
.+...+. . ...... ......+...-.-+..+|.+.+++++|+.+++.+..+
T Consensus 101 s~~~~~~-~---~ss~p~------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTG-N---SASTPQ------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred Ccccccc-c---cCCCcc------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111110 0 000000 0012344566666888999999999999998876543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.73 E-value=9.7 Score=39.43 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
..|...|+++-|+++-++....- |-+..+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34566788888888888877753 556778888888888888888888777765
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.51 E-value=2.6 Score=30.52 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
.+-++.+...++.|++.+..+.+.+|.|.+++..|.++++-..
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555444
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.89 E-value=3.7 Score=29.76 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+.-+..+-++.+....+.|++....+.+.+|.+..++..|.++|+-.+.+ +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455666666666667777777777777777777777777777777643 2233344555543
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.17 E-value=9.9 Score=29.26 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 373 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 5666665556666666654 345677777766543111244455556677778888888888877776 45654
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.06 E-value=1.6 Score=35.11 Aligned_cols=126 Identities=10% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQD-GFVPNV-------ITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIKPNQTI 413 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~ 413 (557)
+-.-+..+...|.++.|+-+...+... +..|+. .++..+.+++...|++.+|...|++.+.. .+.-+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334456677778888887777765442 123442 35666777888888888888888886532 11111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcc
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGIN 482 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 482 (557)
...+.. ....+. .....++...-.-+..++.+.+++++|...++.+......|.++
T Consensus 103 ~~~~~~---~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 103 RPSTGN---SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred cccccc---cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 111100 000000 01122333444456778888888888888888775444444443
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.65 E-value=7.6 Score=29.88 Aligned_cols=70 Identities=10% Similarity=-0.040 Sum_probs=55.6
Q ss_pred CCCcCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDF---DSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
+-.|+..+--.+.+++.+..+. .+++.+++++.+.+ | ....+..+.-++.+.|++++|+++.+.+.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3467888888888888887765 46888999988744 4 245777888899999999999999999876655
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.95 E-value=12 Score=29.19 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 373 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
.|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 5677766667777777665 456777887777643111234444555677888888888888888887 56654
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.78 E-value=13 Score=41.12 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------------
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF----------------- 372 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------- 372 (557)
..++..+...+..+-+..+..-. +.++..--.+..+|...|++++|...|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 34566677777777776654333 23555556677889999999999999987532 11
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 373 ------VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 373 ------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
..-..-|..++..+.+.+.++.+.++-+.+++..-+.+ ...|..+..++...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 01123477888899999999999998888775421222 2368889999999999999999998887643
Q ss_pred CCCHHHHHHHHHHHhhcCCHH
Q 008708 443 PPDQKAKNILLSLAKTADERN 463 (557)
Q Consensus 443 ~p~~~~~~~l~~~~~~~g~~~ 463 (557)
-....+..|+..++..|..+
T Consensus 969 -~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHHHHhCCChh
Confidence 33566777776555544433
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.80 E-value=9.2 Score=27.59 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=58.3
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
........++|--|-+|+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-.|... +.|..+
T Consensus 16 ~gTG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s 86 (116)
T 2p58_C 16 IGTGNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGS 86 (116)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHH
T ss_pred HHccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHH
Confidence 34556678889999999988762 22333334556678899999988876654 5788888776544 677777
Q ss_pred HHHHHHHHHHhCC
Q 008708 149 NAEAIFRRMQSSG 161 (557)
Q Consensus 149 ~A~~~~~~m~~~~ 161 (557)
++...+.++...|
T Consensus 87 ~le~rL~~la~sg 99 (116)
T 2p58_C 87 ALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 7777776776654
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.43 E-value=8.8 Score=27.63 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=59.1
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
........++|--|-+|+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-.|... +.|..+
T Consensus 15 ~gTG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s 85 (115)
T 2uwj_G 15 AGSGQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGA 85 (115)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHH
T ss_pred HHccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHH
Confidence 34556678889999999988762 22333334556778899999988776554 5788888776544 678888
Q ss_pred HHHHHHHHHHhCC
Q 008708 149 NAEAIFRRMQSSG 161 (557)
Q Consensus 149 ~A~~~~~~m~~~~ 161 (557)
++...+.++...|
T Consensus 86 ~le~rL~~la~sg 98 (115)
T 2uwj_G 86 ALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCC
Confidence 8887777776664
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.94 E-value=13 Score=28.64 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-...+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555667777777777777777777777777777776543 233344555554
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.63 E-value=8.1 Score=29.69 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
.-+..+-++.+...++.|++......+.+|.+..++..|.++|+-.+.+ +.+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555666666667778888777888888888888888887777643 2333445555543
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.61 E-value=42 Score=32.31 Aligned_cols=102 Identities=8% Similarity=0.024 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR 285 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (557)
....|...|...|++.+|..++..+...-...+. ... -...+...+..|...+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~--------------~~~-------------kve~~l~q~rl~l~~~ 191 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSME--------------MSE-------------KIQFILEQMELSILKG 191 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC--------------HHH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc--------------HHH-------------HHHHHHHHHHHHHHCC
Confidence 3456778888888888888888887632000000 000 1234455666777888
Q ss_pred CHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 286 REEEALAVFEEMLD----AGVRPTH--KAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 286 ~~~~A~~~~~~~~~----~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++..
T Consensus 192 d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 192 DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888887777532 1112221 2455566667777888888777776653
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.41 E-value=20 Score=27.94 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 338 SPDICSYTTMLSAYVNASDM---EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
.|+..+--....++++..+. .+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45666655566666666543 356666666665431123344445666677777777777777777764
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.27 E-value=57 Score=32.98 Aligned_cols=356 Identities=6% Similarity=-0.020 Sum_probs=170.7
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 81 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
++..++.+....+.....=..-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 55556665554433333334556666677777666654432 1345666666677777778777777766666554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHhHhccC--------CCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 161 GPRPSALTYQIILKLFVEANKFKE--AEEVFMTLLDEEK--------SPLKPDQK-MFHMMIYMYKKAGGYEKARKLFAL 229 (557)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~--A~~~~~~~~~~~~--------~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 229 (557)
|.. .+.....++..+.+.|.+.. ..+=+..++..+. ..++++.. ....++..+.+ ...+......
T Consensus 132 ~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~ 207 (618)
T 1qsa_A 132 GKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART 207 (618)
T ss_dssp SSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc
Confidence 432 33344555655555443322 2222222221100 00111111 11112211111 1111111110
Q ss_pred HHHcCCCCCHHHHHHH---hc--ccCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 230 MAERGVQQSTVTYNSL---MS--FETNYKEVSKIYDQMQRAGLQPDVVSYA----LLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 230 ~~~~~~~~~~~~~~~l---l~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
..++...-..+ +. ...+.+.|...+....+... .+..... .++..+...+...++...+......
T Consensus 208 -----~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 208 -----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred -----cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 11222211111 11 13467788888877765432 2332222 2222333344345666666665543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 380 (557)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (557)
..+.....-.+....+.|+++.|...|+.|.... ........-+..++...|+.++|..+|+.+... .+ .|.
T Consensus 282 --~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg 353 (618)
T 1qsa_A 282 --SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYP 353 (618)
T ss_dssp --CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHH
T ss_pred --CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHH
Confidence 2344334444444557789999999998886532 123444556667788889999999999887642 22 122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCc---CHHH---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKP---NQTI---FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
.+ +..+.|..-.. ....+.+ .... -..-+..+...|....|...+..+... .+......+..
T Consensus 354 ~l--Aa~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~ 421 (618)
T 1qsa_A 354 MV--AAQRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLAR 421 (618)
T ss_dssp HH--HHHHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred HH--HHHHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHH
Confidence 22 12223321000 0000000 0000 112234456777788887777776652 23333445555
Q ss_pred HHhhcCCHHHHHHHHHh
Q 008708 455 LAKTADERNEANELLGN 471 (557)
Q Consensus 455 ~~~~~g~~~~a~~~~~~ 471 (557)
.....|..+.+.....+
T Consensus 422 ~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATIA 438 (618)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHH
Confidence 55666777766655543
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.02 E-value=7.9 Score=34.04 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 105 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 105 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
.+.+.|++++|++....-++.. |.|...-..++..+|-.|+++.|..-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4455666666666666655553 335555666666666666666666666665553
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.32 E-value=33 Score=28.64 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 008708 390 NNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 445 (557)
+....+.++|..|..+|+--. +..|......+...|++++|..+|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 335566666666665544433 45556666666666666666666666666555553
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.91 E-value=46 Score=30.14 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF----FRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~ 383 (557)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45566667888888888888765433 234556776655554 44455668888988888888
Q ss_pred HHHHHcCCHH-HHHHHHHHHHH----CC--CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 384 KGYAKVNNLE-KMMEIYDKMRV----NG--IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 384 ~~~~~~g~~~-~a~~~~~~m~~----~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
..+.....-+ .=.++.+++++ .| ..-++.....+...|.+.|++.+|...| + .|-.-+...+..++.-.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~---i-~~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF---M-LGTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH---H-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH---H-hCCCccHHHHHHHHHHH
Confidence 8877644222 23455555553 22 2236778888888899999888876654 2 12111345555444443
Q ss_pred hhc---CCHHHHHHHHHh
Q 008708 457 KTA---DERNEANELLGN 471 (557)
Q Consensus 457 ~~~---g~~~~a~~~~~~ 471 (557)
... |...++--++-+
T Consensus 176 ~~~~~~~~~~e~dlf~~R 193 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFSR 193 (312)
T ss_dssp HHHTTCCCHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHH
Confidence 444 666665544433
No 260
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.34 E-value=0.71 Score=44.45 Aligned_cols=217 Identities=11% Similarity=0.166 Sum_probs=118.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
|+..|..++....+.|++++-.+.+.-.++.. .++..=+.|+-+|++.++..+..+++ ..|+..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 45566677777777777777777665555442 23344456677777777655433322 1244444455566
Q ss_pred HHHHcCCHHHHHHHHHHhHhc-----------------cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008708 175 LFVEANKFKEAEEVFMTLLDE-----------------EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ 237 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 237 (557)
-|...|.++.|.-+|..+-.- +...-..++.||-.+-.+|...+.+.-|.-.--.+.-..
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha--- 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA--- 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---
Confidence 666666666665555443210 011112455678888888888888777654432222110
Q ss_pred CHHHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC------CHH
Q 008708 238 STVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD-AGVRP------THK 307 (557)
Q Consensus 238 ~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------~~~ 307 (557)
+ ....++.. .|.+++.+.+++.-... .......|+-|.-.|++- ++++..+.++..-. .+++. ...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 0 01112222 36677777777776643 234667777777777665 44444444433211 11211 223
Q ss_pred HHHHHHHHHHHcCCHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQART 327 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~ 327 (557)
.|.-++..|++-.+++.|..
T Consensus 306 LW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHhcchhHHHHHH
Confidence 47777777887777776653
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.69 E-value=23 Score=33.96 Aligned_cols=60 Identities=20% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 008708 134 HTALMEAYGRGGRYKNAEAIFRRMQSS--GPRPSALTYQIILKLFVEANKFKEAEEVFMTLL 193 (557)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 193 (557)
+..+...|.+.|+++.|.+.|.++... +..--...+...++.+...+++..+...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444555555555555555554432 122223344445555555555555555555543
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.05 E-value=19 Score=34.60 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHH--H
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKG--YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS---SGPRPSALT--Y 169 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~--~ 169 (557)
.....+...|.+.|+++.|.+.|.++...- ...-...+-.+++.+...+++..+...+.+... .+..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356789999999999999999999998752 223367888899999999999999999988753 233332221 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
..-...+...+++..|-+.|-.+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111223456777777777766654
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.63 E-value=61 Score=30.51 Aligned_cols=118 Identities=13% Similarity=0.065 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHH
Q 008708 76 WNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-----VVSHTALMEAYGRGGRYKNA 150 (557)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A 150 (557)
++...+.++|.......-+....=..|+..|...|++.+|.+++..+.+.=-..| ...+-.-+..|...+++.++
T Consensus 79 ~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 79 VQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHH
Confidence 4556777788876642111122233688999999999999888888776310111 34456666777888888888
Q ss_pred HHHHHHHHhC--CCCCCHHHHHH----HHHHHH-HcCCHHHHHHHHHHhH
Q 008708 151 EAIFRRMQSS--GPRPSALTYQI----ILKLFV-EANKFKEAEEVFMTLL 193 (557)
Q Consensus 151 ~~~~~~m~~~--~~~~~~~~~~~----ll~~~~-~~g~~~~A~~~~~~~~ 193 (557)
...+...... .+.+++..... -...+. ..+++..|...|-+..
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 8887766432 12233332221 122344 6777887777776654
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.14 E-value=56 Score=29.87 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIF----RRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~ll 173 (557)
.|.++..-|.+.+++++|++++-.-. ..+.+.|+...|-++. +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45667777888899999888765432 1233445554444433 3444556667776666666
Q ss_pred HHHHHcCCHH-HHHHHHHHhHhc---cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 174 KLFVEANKFK-EAEEVFMTLLDE---EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 227 (557)
Q Consensus 174 ~~~~~~g~~~-~A~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (557)
..+.....-+ .-.++.+.++.- ......-++.....+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6655444311 112222222210 01123446677788888888888888888776
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.36 E-value=1.1e+02 Score=32.71 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008708 280 AYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~ 299 (557)
+|+..|+.....+++..+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34444454444445554443
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.34 E-value=14 Score=32.50 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=72.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhc
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMDAYGKN 424 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~ 424 (557)
....+.|++++|++....-++.. |-|...-..|+..+|-.|++++|.+-++...+. .|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 34567788889988888877775 778888888899999999999999888887764 333 3344444443
Q ss_pred CChhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--hhcCCHHHHHHHHHhcC
Q 008708 425 KDFDSAVVWYKEMESCGFPP-----DQKAKNILLSLA--KTADERNEANELLGNFN 473 (557)
Q Consensus 425 g~~~~A~~~~~~m~~~~~~p-----~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 473 (557)
...-.+...-+-.| ...-...++.++ ...|+.++|.++-..+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~ 127 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 127 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 22222232211111 223344455544 45689999988887764
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=63.27 E-value=40 Score=24.36 Aligned_cols=78 Identities=9% Similarity=-0.083 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYK 435 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 435 (557)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|-.+-. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554431 2222222234455666666666654443 2566665554432 35666666666665
Q ss_pred HHHhCC
Q 008708 436 EMESCG 441 (557)
Q Consensus 436 ~m~~~~ 441 (557)
.+-..|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=63.22 E-value=87 Score=28.31 Aligned_cols=114 Identities=8% Similarity=0.089 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI----FRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~ll 173 (557)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 456677777888888888887654322 23445555544443 44444556777777766666
Q ss_pred HHHHHcCCHH-HHHHHHHHhH----hccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 174 KLFVEANKFK-EAEEVFMTLL----DEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 227 (557)
Q Consensus 174 ~~~~~~g~~~-~A~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (557)
..+.....-+ .-.++++.++ +.+ ....-++.....+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6655432111 1122333332 211 112346788888999999999999998877
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=62.99 E-value=1.3e+02 Score=30.31 Aligned_cols=52 Identities=6% Similarity=-0.075 Sum_probs=24.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..+.|+++.|...|..|.... .......--+..++...|+.++|..+|+.+.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 334555555555555554321 1122222333444455555555555555554
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.40 E-value=41 Score=24.30 Aligned_cols=78 Identities=8% Similarity=-0.011 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYK 435 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 435 (557)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|-.+-. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555554431 2222222334455666777766655443 2566666655432 35666666666665
Q ss_pred HHHhCC
Q 008708 436 EMESCG 441 (557)
Q Consensus 436 ~m~~~~ 441 (557)
.+-..|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555444
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.23 E-value=58 Score=26.12 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 008708 113 NKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 113 ~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 167 (557)
+.+.++|..|...|+-.. ...|......+-..|++.+|.++|..-++.+..|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 447777888877765433 5566677777777888888888888877777776543
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.12 E-value=67 Score=25.36 Aligned_cols=53 Identities=8% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 394 KMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
.+.++|..|..+|+--. +..|......+...|++++|..+|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 36677777776655444 556666777777777777777777777776666643
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.96 E-value=71 Score=25.24 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 008708 113 NKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 166 (557)
Q Consensus 113 ~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 166 (557)
+++.++|..|...|+-.. ...|......+-..|++++|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 558899999988876443 566778888888899999999999998888777744
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.72 E-value=93 Score=25.92 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=36.8
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 008708 110 GDFNKAEKVLSFMNKKGYAP-SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 164 (557)
+...++.++|..|...|+-- -...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33557777777777665433 34556666677777777777777777777766666
No 275
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.52 E-value=98 Score=33.31 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcC
Q 008708 167 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAG 218 (557)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 218 (557)
.-|..++..+-+.+.++.+.++-+.+++.-... .++ ...|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d-d~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC-CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC-CccchHHHHHHHHHHHhhCC
Confidence 367889999999999999999888888632111 111 246888888877655
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.55 E-value=85 Score=25.16 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 373 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
.-|..-...-+..--.. +.+.++|..|..+|+--. +..|......+...|++.+|..+|+.-++.+-.|-..
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 44555444444332223 336667888877766544 5667777777778888888888888888877777553
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.05 E-value=1.5e+02 Score=27.13 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
++.....+...|.+.+++.+|...|- . |-.+....|..++.-+...
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHh
Confidence 56666677777777777777777662 1 3233345555554444433
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.97 E-value=72 Score=27.44 Aligned_cols=24 Identities=17% Similarity=-0.021 Sum_probs=17.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNK 124 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~ 124 (557)
--++.+....++++|.+++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356777888888888888876654
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.19 E-value=91 Score=26.47 Aligned_cols=55 Identities=9% Similarity=0.295 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 008708 112 FNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 166 (557)
Q Consensus 112 ~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 166 (557)
.+.+.++|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3688899999998876543 567788888888999999999999998888777743
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.20 E-value=2.1e+02 Score=26.79 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHH---
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPT-----HKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPDICSYT--- 345 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~--- 345 (557)
-++..|...|++.+|..++.++.+.=...| ..++..-+..|...+++.++...+...... .+.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466677777777777777777654311111 124555566677777777777777665432 1223332211
Q ss_pred -HHHHHHH-HcCCHHHHHHHHHHHH
Q 008708 346 -TMLSAYV-NASDMEGAEKFFRRLK 368 (557)
Q Consensus 346 -~li~~~~-~~g~~~~A~~~~~~m~ 368 (557)
.-.-.+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1112344 5677777777666553
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=42.61 E-value=1.4e+02 Score=24.54 Aligned_cols=171 Identities=12% Similarity=0.012 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 348 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 348 (557)
++...-...+..+.+.+.. .+...+..+.. .++..+-...+.++...+..+ +...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4555555556666666653 33333333433 356666666777777777533 3334444433 45666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.|..+ +...+..+.+ .++...-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 7777777743 4444444443 467666667777777777643 4444545543 3566666777777777776 4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTA 459 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 459 (557)
++...+..+.+ .++...-.....++...
T Consensus 174 ~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 RVRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 55666666654 34555544444444443
No 282
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.56 E-value=1.6e+02 Score=24.48 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=10.4
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 008708 354 ASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~ 371 (557)
..+++.|+-.+-+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 345555666666666655
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.35 E-value=95 Score=26.34 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 393 EKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
+.+..+|..|..+|+--. +..|......+...|++.+|..+|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 466678888887766544 566777888888888888888888888877666643
No 284
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.42 E-value=1.7e+02 Score=24.23 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
..+++.|+-.+-+|++.|-.|....-..++.+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45666666666666666644443333333333
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.74 E-value=1.5e+02 Score=25.51 Aligned_cols=91 Identities=8% Similarity=-0.006 Sum_probs=51.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQD--GFVP----NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
--+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3467888888999998888876542 2222 1111122222222222223333344444 32 445666667777
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
.+.+.|+.++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 88888888888888877654
No 286
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.90 E-value=1.9e+02 Score=24.02 Aligned_cols=37 Identities=14% Similarity=0.286 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008708 283 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 320 (557)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 320 (557)
+-.+++.|+-++-+|++.| .|.-..-..++.+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567777777777777777 544444444444444333
No 287
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=35.34 E-value=4.4e+02 Score=28.14 Aligned_cols=251 Identities=10% Similarity=0.013 Sum_probs=130.3
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC----CHHHHHHHhc-
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQK--MFHMMIYMYKKAGGYEKARKLFALMAERGV--QQ----STVTYNSLMS- 247 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~~ll~- 247 (557)
...|+.++++.++...+.. ....+.. .-..+.-+....|..+++..++.......- .- ......+.+.
T Consensus 385 Ih~g~~~~gl~~L~~yL~~---~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPG---SRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTT---SCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccc---cCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3445666666666555421 0012222 222333344555655567777766554311 00 1111122221
Q ss_pred ---ccC-CHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHc
Q 008708 248 ---FET-NYKEVSKIYDQMQRAGLQPDVV--SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDA--FAIS 319 (557)
Q Consensus 248 ---~~~-~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~ 319 (557)
..| .-+++...+..+....- +... .-..+...+.-.|+.+....++..+.+. .+..+...+..+ +...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 122 23455565655554321 1111 1123334455667877777777777653 233333333333 4467
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICS-YT---TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 395 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~-~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 395 (557)
|+.+.+..+.+.+... .++.. |. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 8888888888877763 23332 22 33446777888877777888887652 33344444444445556777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF-DSAVVWYKEMES 439 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 439 (557)
.++++.+.+.+ .|....-..+.-+....|.. .+|+.++..+..
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77777666543 34444333444444445554 567777777763
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.03 E-value=2.7e+02 Score=25.66 Aligned_cols=80 Identities=10% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD--FDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+....++..+.+.|+-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578888899999999999999988632111 12334455556655433 35677888888887766665555555554
Q ss_pred Hhh
Q 008708 456 AKT 458 (557)
Q Consensus 456 ~~~ 458 (557)
+..
T Consensus 298 l~~ 300 (358)
T 3eiq_C 298 YNE 300 (358)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 289
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.19 E-value=1.6e+02 Score=23.06 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=28.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 122 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 122 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
+.+.|+.++ .--..++..+...+.+-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444554432 2233344444444555566666666665555555555544555555554
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.93 E-value=2e+02 Score=23.36 Aligned_cols=171 Identities=12% Similarity=0.017 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 348 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 348 (557)
++...-...+..+.+.+..+ +...+..+.. .++..+-...+.++...+..+ +...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555555555555555532 2333333332 356666666667777776543 3333444443 35777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.+.. .+...+..+.. .++...-...+.++.+.|. .
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 7777777753 3444444443 45666666677777777764 34444444443 3566666777777777776 4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTA 459 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 459 (557)
++...+..+.+ .++...-.....++.+.
T Consensus 169 ~~~~~L~~~l~---d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 169 RVRAAMEKLAE---TGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHH---HCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHh---CCCHHHHHHHHHHHHHH
Confidence 56666666654 34555544444444443
No 291
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.00 E-value=1.6e+02 Score=22.88 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 122 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 122 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
+.+.|+.++.. -..++..+...+..-.|.++++.+.+.++..+..|.-..+..+.+.|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 44455444432 22333334344445556666666655555555555444455555444
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.76 E-value=1.7e+02 Score=22.21 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4456666666677777777776654
No 293
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.51 E-value=2.5e+02 Score=25.86 Aligned_cols=66 Identities=12% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCC
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD--MEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~ 375 (557)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 455666677777777777777776532111 12233344444443322 3345566666665554433
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.59 E-value=1.5e+02 Score=23.37 Aligned_cols=64 Identities=11% Similarity=0.302 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCC
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN--LEKMMEIYDKMRVNGI 407 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~ 407 (557)
....++.-|...|+.++|...++++.... -....+...+..++-+.+. .+.+..++..+.+.++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34566677777777777777777764211 1112233334444443222 3345555555555443
No 295
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.42 E-value=1.5e+02 Score=22.61 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=30.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 122 MNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 122 ~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+.+.|+.++.. -..++..+...+ .+-.|.++++.+.+.++..+..|.-.-+..+.+.|-
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 44455544433 223344444444 455666666666666655565555555555555543
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.27 E-value=4.8e+02 Score=27.98 Aligned_cols=108 Identities=8% Similarity=0.027 Sum_probs=60.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC------------------
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK------------------ 408 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~------------------ 408 (557)
++..|...|.++-|.++... .+.++..--.++.+|...|++++|..+|+++.. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44555555655544433221 122333333456666666666666666665431 110
Q ss_pred -----cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcC
Q 008708 409 -----PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ----KAKNILLSLAKTAD 460 (557)
Q Consensus 409 -----p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g 460 (557)
....-|..++..+.+.+-++.+.++.+.+++.--+.|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11236788888899999999999998888864212233 24555555554433
No 297
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.23 E-value=2.6e+02 Score=23.36 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=25.1
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 276 LLINAY---GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 276 ~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
.+|+++ .+-.+++.|+-++-+|++.|-.|.-..-..++.+...
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 344444 3456777777777777777755554444444444433
No 298
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.19 E-value=4e+02 Score=25.43 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=14.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~ 375 (557)
+.++.+.|+..+.+|.+.|..|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~ 289 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPL 289 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHH
Confidence 34667777777777777664443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.12 E-value=2.2e+02 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 310 NILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555666666666666666654
No 300
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.59 E-value=1.4e+02 Score=20.08 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=29.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 122 MNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 122 ~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544332 33344444433 34455566666655555555555555555555544
No 301
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.54 E-value=1.4e+02 Score=20.08 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 460 (557)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3556676666544 34445555543 45567777777776654556666666666666555
No 302
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=26.72 E-value=2.5e+02 Score=22.65 Aligned_cols=152 Identities=10% Similarity=-0.070 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
.++..+-...+.++...+..+ +...+.++.. .++...-...+.++...+..+ +...+..+.. .++...-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 355555555666666666533 3333333333 356666667777777777653 4444444443 4677777778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADER 462 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 462 (557)
+.++.+.|..+ +...+..+.. .++...-...+.++.+.|+. ++...+..+.. .++...-...+.++.+.|..
T Consensus 97 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 97 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 88888888754 4444444443 46777777788888888874 45555555554 46777777777888887765
Q ss_pred HHHHHHHHh
Q 008708 463 NEANELLGN 471 (557)
Q Consensus 463 ~~a~~~~~~ 471 (557)
+ +...+..
T Consensus 169 ~-~~~~L~~ 176 (201)
T 3ltj_A 169 R-VRAAMEK 176 (201)
T ss_dssp H-HHHHHHH
T ss_pred h-HHHHHHH
Confidence 4 3333333
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.09 E-value=4.7e+02 Score=25.56 Aligned_cols=123 Identities=10% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN-------VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--- 410 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--- 410 (557)
...+|.+++.|...+.++.|..+..+.. .+.+ ..-+-.++..+.-.+++.+|.+.+..+...-....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~ 307 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL 307 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 411 ---QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 411 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
...+..++-+-.-.|+..+ ...+...++......|..|..++ +.|+++.-...+++
T Consensus 308 gfr~~a~K~lI~V~LLlG~iP~----r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 308 GFLQQSNKLHCCIQLLMGDIPE----LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC----HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHhhcCCCCC----hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.07 E-value=1.5e+02 Score=23.08 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=27.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 122 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 122 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.++..+..|.-.-+..+.+.|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34445544432 222333333444 4556666666665555555555444445555444
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.24 E-value=3e+02 Score=23.02 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
..+++.|+-.+-+|++.|-.|....-..++.+.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355666666666666665444333333333333
No 306
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.03 E-value=2.2e+02 Score=22.59 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=21.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC
Q 008708 137 LMEAYGRGGRYKNAEAIFRRMQSS--GPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~ 181 (557)
++..+...+.+-.|.++++.+.+. ++..+..|.-.-+..+.+.|-
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444455555555555544 444444444444445555553
No 307
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=24.95 E-value=1.7e+02 Score=22.87 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=32.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 122 MNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 122 ~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+.+.|+.++..- ..++..+...+ .+-.|.++++.+.+.++..+..|.-..+..+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 445555544332 23334444444 455667777777666666666665555555555553
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.61 E-value=3.8e+02 Score=24.01 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD--FDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+....++..+.+.|+-+.......+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567888888999999999999988521111 12334455555555433 345667888887766655554444444433
Q ss_pred h
Q 008708 457 K 457 (557)
Q Consensus 457 ~ 457 (557)
.
T Consensus 248 ~ 248 (307)
T 2zu6_B 248 N 248 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 309
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.48 E-value=3e+02 Score=22.76 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=23.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
.+-.+++.|+-++-+|++.|-.|.-..-..++.+...
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 3456788888888888887765554444444444433
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.12 E-value=2.5e+02 Score=21.26 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 310 NILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
..++.-|...|+.++|...++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445555666666666666666654
No 311
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.00 E-value=3.1e+02 Score=22.34 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 208 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (557)
++...-...+..+...|.. .+...+..+.. .++...-...+.++...+..+. ...+..++. .++..+-.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~------~~~~~vr~ 99 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK------DEDGWVRQ 99 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT------CSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc------CCCHHHHH
Confidence 3555555555555555543 23333333332 2355555555555555554332 222333321 24444555
Q ss_pred HHHHHHHHcCC
Q 008708 209 MMIYMYKKAGG 219 (557)
Q Consensus 209 ~l~~~~~~~g~ 219 (557)
..+.++.+.++
T Consensus 100 ~a~~aL~~~~~ 110 (211)
T 3ltm_A 100 SAAVALGQIGD 110 (211)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCc
Confidence 55555555544
No 312
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=22.66 E-value=2.2e+02 Score=20.43 Aligned_cols=56 Identities=5% Similarity=0.138 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH-----HhCCCCCCHHHHHHH
Q 008708 395 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM-----ESCGFPPDQKAKNIL 452 (557)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m-----~~~~~~p~~~~~~~l 452 (557)
|.++.+++...|+.|+..+...++..|...+- + +.++..+. ...|..|+...++.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 44555555556666776666666666655543 1 33322222 124556666555443
No 313
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.56 E-value=1.8e+02 Score=22.02 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=17.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008708 106 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 145 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 145 (557)
+...+..-.|.++++.+.+.+...+..|-...+..+...|
T Consensus 20 l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 20 LETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344455555555554443334444333444444443
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.83 E-value=2.8e+02 Score=21.38 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=42.5
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 400 DKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 400 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+-..+..|....+..+...|-
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34667788877543 33445555566777899999999887656677777777777777763
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.52 E-value=1.4e+02 Score=23.68 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=30.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 158 QSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 220 (557)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (557)
.+.|.+++.. -..++..+...+..-.|.++++.+.+.. .+...+..|...-++.+...|-.
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~-~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAE-PDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHC-GGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445555443 2344455555556666666666665320 02234555555555666666643
No 316
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.46 E-value=1.3e+02 Score=22.83 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 136 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
.++..+...+.+-.|.++++.+.+.++..+..|.-..+..+.+.|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455555566677788888888777776677766666666666664
No 317
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.38 E-value=1.6e+02 Score=18.51 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=22.1
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAE 116 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (557)
.......++|-.+-+|+...+. ....+--..+..+..+|++++|+
T Consensus 16 ~TG~HcH~EA~tIA~~L~~~~~--~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 16 GTGHHCHQEAASIADWLAQEEC--MAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHTTTCHHHHHHHHHHHHTSST--THHHHHHHHHHHHHHC-------
T ss_pred HccchHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHccchHhHhh
Confidence 3455677888888888887652 11222223344566777777764
No 318
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.09 E-value=1.6e+02 Score=22.69 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008708 112 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG 144 (557)
Q Consensus 112 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 144 (557)
.-.|.++++.+.+.+...+..|-...+..+...
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 344444444444443333333333333333333
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.79 E-value=1.3e+02 Score=23.24 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 135 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
..++..+...+.+-.|.++++.+.+.++..+..|.-..+..+.+.|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556656666677888888887777777777666666666666643
No 320
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.70 E-value=5.5e+02 Score=24.42 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=22.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
+.++.+.|+.++.+|.+.|..|....-..+..+.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4578888999999998887665544444444343
No 321
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.65 E-value=1.6e+02 Score=24.71 Aligned_cols=181 Identities=8% Similarity=-0.050 Sum_probs=83.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHH
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRPTHK--AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS--YTTMLSAYVN 353 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~ 353 (557)
+...+..|+.+.+..+++.+.+.+..++.. .-.+.+...+..|+.+-+. .+.+.|..++... -...+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHH
Confidence 344566778777777777666555443321 0112233444566665433 3344444332211 1123334456
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHHhcCCh
Q 008708 354 ASDMEGAEKFFRRLKQDGFVP---NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI---FTTIMDAYGKNKDF 427 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~ 427 (557)
.|+.+-+..+++.....++.+ +..-.+. +...+..|+.+- ++.+.+.|..++... -.+.+...+..|+.
T Consensus 89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 677766665555432111111 1111222 233345566544 344444444433211 12233334466775
Q ss_pred hHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 428 DSAVVWYKEMESCGFPPDQK--AKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 428 ~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+- ++.+++.|..++.. .-...+......|+.+-+..+++.
T Consensus 164 ~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 164 SM----VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp HH----HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred HH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 54 44444555554321 112233344566788877777764
Done!