Query 008709
Match_columns 557
No_of_seqs 183 out of 1010
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 09:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 8E-107 3E-111 907.8 55.1 538 3-557 208-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 2E-105 6E-110 897.3 55.9 533 3-557 223-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 2.9E-81 9.9E-86 647.0 35.3 356 201-557 4-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 1.5E-34 5.1E-39 301.8 19.7 199 3-214 197-395 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 6.6E-32 2.3E-36 278.3 11.8 185 3-197 180-364 (364)
6 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 8.2E-31 2.8E-35 269.1 18.9 179 3-197 174-352 (354)
7 2wzk_A Cullin-5, CUL-5; UBL co 100.0 2.9E-30 1E-34 268.4 19.0 183 3-197 194-380 (391)
8 3o2p_E Cell division control p 99.9 6.5E-27 2.2E-31 185.4 7.3 82 475-557 7-88 (88)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 3.4E-27 1.2E-31 182.6 4.9 76 482-557 2-77 (77)
10 1iuy_A Cullin-3 homologue; win 99.9 8.5E-27 2.9E-31 186.9 1.9 82 476-557 11-92 (92)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 4.3E-26 1.5E-30 185.3 5.7 81 475-557 15-95 (101)
12 1wi9_A Protein C20ORF116 homol 91.1 0.18 6.2E-06 37.5 3.5 56 494-557 10-65 (72)
13 3cuo_A Uncharacterized HTH-typ 89.4 0.68 2.3E-05 36.6 6.1 49 392-442 23-71 (99)
14 2jt1_A PEFI protein; solution 89.3 0.37 1.3E-05 36.8 4.0 41 406-448 23-63 (77)
15 3lmm_A Uncharacterized protein 88.4 0.21 7.3E-06 53.7 3.0 136 392-551 429-568 (583)
16 1qgp_A Protein (double strande 87.8 0.63 2.2E-05 35.4 4.5 56 396-458 17-75 (77)
17 3jth_A Transcription activator 87.4 1.3 4.4E-05 35.0 6.5 49 392-443 22-70 (98)
18 3tgn_A ADC operon repressor AD 86.8 0.9 3.1E-05 38.6 5.6 51 389-442 34-84 (146)
19 3hsr_A HTH-type transcriptiona 86.5 0.66 2.3E-05 39.4 4.5 50 391-442 34-83 (140)
20 2fu4_A Ferric uptake regulatio 86.1 0.88 3E-05 34.8 4.6 52 389-442 13-71 (83)
21 3g3z_A NMB1585, transcriptiona 85.9 0.81 2.8E-05 39.0 4.8 50 391-442 29-78 (145)
22 1sfx_A Conserved hypothetical 85.6 0.69 2.4E-05 37.0 4.0 50 391-442 18-67 (109)
23 1y0u_A Arsenical resistance op 85.6 1.6 5.3E-05 34.5 6.0 56 392-459 30-85 (96)
24 2dk5_A DNA-directed RNA polyme 85.4 0.74 2.5E-05 36.3 3.9 51 389-441 16-68 (91)
25 2k4b_A Transcriptional regulat 85.0 0.37 1.3E-05 38.7 2.0 60 493-557 37-96 (99)
26 3ech_A MEXR, multidrug resista 84.6 0.65 2.2E-05 39.5 3.5 51 390-442 34-84 (142)
27 3cdh_A Transcriptional regulat 84.5 1.4 4.8E-05 37.9 5.8 50 391-442 41-90 (155)
28 2htj_A P fimbrial regulatory p 84.5 2.1 7.3E-05 32.5 6.2 59 397-459 4-62 (81)
29 1qbj_A Protein (double-strande 84.4 1.6 5.3E-05 33.6 5.2 58 395-459 12-72 (81)
30 1xn7_A Hypothetical protein YH 84.4 0.81 2.8E-05 34.9 3.5 43 398-442 7-49 (78)
31 3nrv_A Putative transcriptiona 84.4 1 3.5E-05 38.5 4.7 51 390-442 37-87 (148)
32 1oyi_A Double-stranded RNA-bin 84.1 1.4 5E-05 33.8 4.8 43 397-442 21-63 (82)
33 4hbl_A Transcriptional regulat 83.9 0.85 2.9E-05 39.1 4.0 50 391-442 39-88 (149)
34 2gxg_A 146AA long hypothetical 83.7 1.5 5.1E-05 37.2 5.5 49 391-442 35-83 (146)
35 2k02_A Ferrous iron transport 83.6 0.89 3E-05 35.5 3.5 43 398-442 7-49 (87)
36 3lwf_A LIN1550 protein, putati 83.6 2.7 9.3E-05 36.8 7.1 59 394-459 30-89 (159)
37 3oop_A LIN2960 protein; protei 83.4 0.72 2.5E-05 39.2 3.3 50 391-442 35-84 (143)
38 3r0a_A Putative transcriptiona 83.3 1 3.5E-05 37.6 4.1 52 389-442 22-75 (123)
39 2fbh_A Transcriptional regulat 83.3 1.2 4.1E-05 37.8 4.7 50 391-442 35-85 (146)
40 2frh_A SARA, staphylococcal ac 83.0 0.88 3E-05 38.1 3.6 50 391-442 35-86 (127)
41 3bpv_A Transcriptional regulat 82.7 0.97 3.3E-05 37.9 3.8 50 391-442 27-76 (138)
42 1p6r_A Penicillinase repressor 82.7 1.4 4.9E-05 33.5 4.4 59 493-556 11-69 (82)
43 2qww_A Transcriptional regulat 82.7 1.3 4.3E-05 38.1 4.6 49 391-441 39-87 (154)
44 1xn7_A Hypothetical protein YH 82.6 1.2 4E-05 34.0 3.8 45 494-546 5-49 (78)
45 3eco_A MEPR; mutlidrug efflux 82.6 1.1 3.7E-05 37.8 4.1 50 391-442 29-80 (139)
46 3t8r_A Staphylococcus aureus C 82.5 2.9 0.0001 35.8 6.9 58 395-459 15-73 (143)
47 1u2w_A CADC repressor, cadmium 82.2 2.1 7.2E-05 35.5 5.6 49 392-442 41-89 (122)
48 3bj6_A Transcriptional regulat 82.2 1.4 4.7E-05 37.7 4.7 50 391-442 38-87 (152)
49 3bro_A Transcriptional regulat 82.1 1.5 5.1E-05 36.9 4.8 50 391-442 32-83 (141)
50 2d1h_A ST1889, 109AA long hypo 82.0 1.2 4E-05 35.6 3.9 50 391-442 19-69 (109)
51 1sfu_A 34L protein; protein/Z- 81.9 2.8 9.7E-05 31.4 5.5 54 398-458 20-73 (75)
52 3k0l_A Repressor protein; heli 81.9 1 3.6E-05 39.2 3.8 50 391-442 44-93 (162)
53 3k69_A Putative transcription 81.8 1.6 5.5E-05 38.4 5.0 47 394-442 15-61 (162)
54 1jgs_A Multiple antibiotic res 81.4 1.2 4.1E-05 37.4 3.9 50 391-442 32-81 (138)
55 2fa5_A Transcriptional regulat 81.4 1.5 5.2E-05 37.9 4.7 50 391-442 47-96 (162)
56 3pqk_A Biofilm growth-associat 80.9 3.3 0.00011 32.8 6.3 59 393-458 23-81 (102)
57 3e6m_A MARR family transcripti 80.5 1.1 3.8E-05 38.9 3.5 50 391-442 51-100 (161)
58 3bdd_A Regulatory protein MARR 80.4 1.4 4.8E-05 37.1 4.1 51 390-442 28-78 (142)
59 2heo_A Z-DNA binding protein 1 80.1 1.3 4.5E-05 32.5 3.2 44 395-440 12-56 (67)
60 3deu_A Transcriptional regulat 80.1 1.5 5.3E-05 38.4 4.3 50 391-442 51-101 (166)
61 1xmk_A Double-stranded RNA-spe 80.0 2.4 8.1E-05 32.4 4.7 48 393-442 11-59 (79)
62 2pex_A Transcriptional regulat 80.0 1.5 5.2E-05 37.6 4.2 50 391-442 45-94 (153)
63 2nyx_A Probable transcriptiona 79.6 1.3 4.4E-05 38.9 3.6 50 391-442 43-92 (168)
64 3bja_A Transcriptional regulat 79.5 0.95 3.3E-05 38.0 2.6 50 391-442 31-80 (139)
65 2nnn_A Probable transcriptiona 79.5 1.2 4E-05 37.5 3.2 50 391-442 36-85 (140)
66 2hr3_A Probable transcriptiona 79.2 1.6 5.6E-05 37.0 4.1 50 391-442 33-83 (147)
67 3cjn_A Transcriptional regulat 79.2 1.6 5.4E-05 37.9 4.1 50 391-442 50-99 (162)
68 1tbx_A ORF F-93, hypothetical 79.0 1.6 5.6E-05 34.4 3.8 50 391-442 6-59 (99)
69 2a61_A Transcriptional regulat 78.9 1.2 4.3E-05 37.6 3.2 50 391-442 31-80 (145)
70 2k02_A Ferrous iron transport 78.7 1.4 4.7E-05 34.3 3.0 45 495-547 6-50 (87)
71 1p6r_A Penicillinase repressor 78.6 1.8 6.2E-05 32.9 3.7 51 390-442 6-60 (82)
72 2rdp_A Putative transcriptiona 78.5 1.6 5.6E-05 37.1 3.9 50 391-442 40-89 (150)
73 1ku9_A Hypothetical protein MJ 78.4 2.7 9.3E-05 35.5 5.3 50 391-442 24-74 (152)
74 1lj9_A Transcriptional regulat 78.4 1.3 4.5E-05 37.4 3.2 50 391-442 27-76 (144)
75 1s3j_A YUSO protein; structura 78.3 1.3 4.5E-05 38.0 3.3 50 391-442 35-84 (155)
76 2bv6_A MGRA, HTH-type transcri 78.1 1.1 3.8E-05 37.9 2.6 50 391-442 35-84 (142)
77 2eth_A Transcriptional regulat 78.1 1.8 6E-05 37.3 4.0 50 391-442 42-91 (154)
78 3s2w_A Transcriptional regulat 77.7 1.1 3.7E-05 38.9 2.5 50 391-442 48-97 (159)
79 1z91_A Organic hydroperoxide r 77.5 1.5 5.3E-05 37.2 3.4 50 391-442 38-87 (147)
80 2y75_A HTH-type transcriptiona 77.4 5.4 0.00018 33.2 6.8 48 405-459 24-71 (129)
81 4b8x_A SCO5413, possible MARR- 77.3 1.7 5.9E-05 37.2 3.7 50 391-442 33-84 (147)
82 2fbi_A Probable transcriptiona 77.1 1.3 4.4E-05 37.3 2.7 50 391-442 34-83 (142)
83 3fm5_A Transcriptional regulat 76.9 2.2 7.5E-05 36.4 4.2 50 391-442 37-87 (150)
84 3f3x_A Transcriptional regulat 76.8 1.6 5.4E-05 37.0 3.2 50 390-442 34-83 (144)
85 2e1c_A Putative HTH-type trans 76.6 2.3 7.7E-05 37.7 4.3 66 371-441 8-73 (171)
86 1ylf_A RRF2 family protein; st 76.5 4.4 0.00015 34.9 6.1 58 394-459 17-74 (149)
87 3jw4_A Transcriptional regulat 76.3 1 3.6E-05 38.4 2.0 50 391-442 39-90 (148)
88 4aik_A Transcriptional regulat 76.3 3.6 0.00012 35.4 5.5 50 391-442 29-79 (151)
89 2xub_A DNA-directed RNA polyme 75.8 4.7 0.00016 42.7 7.2 129 404-548 30-162 (534)
90 3nqo_A MARR-family transcripti 75.7 2.1 7.2E-05 38.4 3.9 50 391-442 39-90 (189)
91 1r1u_A CZRA, repressor protein 75.2 2.8 9.5E-05 33.7 4.2 48 392-442 25-72 (106)
92 3kp7_A Transcriptional regulat 75.0 1.7 5.7E-05 37.3 2.9 49 390-441 35-83 (151)
93 1bja_A Transcription regulator 75.0 2.9 0.0001 33.0 4.0 50 389-440 12-62 (95)
94 1ub9_A Hypothetical protein PH 75.0 2.1 7.1E-05 33.6 3.3 48 392-441 15-62 (100)
95 2oqg_A Possible transcriptiona 75.0 2.2 7.6E-05 34.5 3.5 48 392-442 20-67 (114)
96 2l02_A Uncharacterized protein 74.4 5.7 0.00019 30.3 5.2 36 398-433 13-48 (82)
97 2pn6_A ST1022, 150AA long hypo 74.3 4.2 0.00014 34.8 5.4 48 392-441 2-49 (150)
98 2qlz_A Transcription factor PF 74.0 7.2 0.00025 36.4 7.2 152 393-548 12-213 (232)
99 2fu4_A Ferric uptake regulatio 73.9 5.3 0.00018 30.3 5.3 59 494-555 20-80 (83)
100 2v79_A DNA replication protein 73.8 2.4 8.2E-05 36.0 3.5 52 388-441 27-83 (135)
101 2fxa_A Protease production reg 73.6 2.1 7.2E-05 39.2 3.4 50 391-442 46-95 (207)
102 3boq_A Transcriptional regulat 73.5 1.7 5.9E-05 37.5 2.7 50 391-442 45-95 (160)
103 1xd7_A YWNA; structural genomi 72.7 7 0.00024 33.4 6.3 56 394-459 12-67 (145)
104 2w25_A Probable transcriptiona 72.5 3.9 0.00013 35.1 4.7 49 391-441 5-53 (150)
105 2jsc_A Transcriptional regulat 71.7 5.6 0.00019 32.6 5.3 48 392-442 20-67 (118)
106 2vn2_A DNAD, chromosome replic 71.2 4.1 0.00014 34.1 4.4 52 389-442 28-84 (128)
107 1sd4_A Penicillinase repressor 70.9 3 0.0001 34.4 3.5 59 493-556 12-70 (126)
108 2kko_A Possible transcriptiona 70.9 2.2 7.6E-05 34.5 2.6 45 395-442 27-71 (108)
109 1bby_A RAP30; average structur 70.5 10 0.00035 27.9 5.7 57 395-461 10-66 (69)
110 2wte_A CSA3; antiviral protein 70.3 3.3 0.00011 39.0 4.0 50 391-442 150-199 (244)
111 2obp_A Putative DNA-binding pr 69.8 4.5 0.00015 32.1 4.0 50 390-441 13-68 (96)
112 2cfx_A HTH-type transcriptiona 69.6 5 0.00017 34.1 4.7 49 391-441 3-51 (144)
113 2v79_A DNA replication protein 69.2 4 0.00014 34.6 3.9 27 519-545 57-83 (135)
114 2ia0_A Putative HTH-type trans 69.1 4.7 0.00016 35.6 4.5 51 388-440 12-62 (171)
115 3r0a_A Putative transcriptiona 68.3 5.4 0.00018 33.0 4.5 58 491-556 26-89 (123)
116 1i1g_A Transcriptional regulat 67.5 4 0.00014 34.5 3.6 48 392-441 3-50 (141)
117 2cg4_A Regulatory protein ASNC 67.3 5.4 0.00018 34.2 4.5 48 391-440 6-53 (152)
118 1qgp_A Protein (double strande 67.1 3.9 0.00013 30.9 3.0 53 493-553 16-71 (77)
119 3f6o_A Probable transcriptiona 66.9 4.6 0.00016 33.1 3.7 48 392-442 17-64 (118)
120 2p5k_A Arginine repressor; DNA 66.8 7.3 0.00025 27.6 4.4 37 395-431 7-48 (64)
121 1tbx_A ORF F-93, hypothetical 66.8 7.1 0.00024 30.6 4.8 56 493-552 10-65 (99)
122 2dbb_A Putative HTH-type trans 66.7 5.6 0.00019 34.1 4.5 48 391-440 7-54 (151)
123 1fse_A GERE; helix-turn-helix 66.6 10 0.00034 27.7 5.3 41 390-432 11-51 (74)
124 1sd4_A Penicillinase repressor 66.1 3.7 0.00013 33.8 3.0 51 390-442 7-61 (126)
125 3ulq_B Transcriptional regulat 65.6 8.5 0.00029 29.9 4.9 43 388-432 27-69 (90)
126 3u2r_A Regulatory protein MARR 65.3 2.4 8.2E-05 37.0 1.8 50 391-442 44-95 (168)
127 2g9w_A Conserved hypothetical 65.1 7.3 0.00025 32.8 4.8 50 391-442 7-61 (138)
128 2cyy_A Putative HTH-type trans 65.1 5.9 0.0002 34.0 4.3 49 391-441 5-53 (151)
129 4fx0_A Probable transcriptiona 64.8 7.5 0.00026 33.2 4.9 48 391-440 31-83 (148)
130 2g9w_A Conserved hypothetical 64.5 6.8 0.00023 33.0 4.5 60 492-556 10-70 (138)
131 2p5v_A Transcriptional regulat 64.5 7 0.00024 33.9 4.7 49 391-441 8-56 (162)
132 1qbj_A Protein (double-strande 64.4 7.6 0.00026 29.6 4.2 53 493-553 12-67 (81)
133 3f8b_A Transcriptional regulat 64.0 22 0.00075 28.9 7.4 59 487-546 8-66 (116)
134 2lkp_A Transcriptional regulat 63.9 7.5 0.00026 31.7 4.5 46 393-441 32-77 (119)
135 1r1t_A Transcriptional repress 63.8 9.2 0.00031 31.6 5.0 45 394-441 47-91 (122)
136 1je8_A Nitrate/nitrite respons 63.5 11 0.00039 28.4 5.2 40 391-432 22-61 (82)
137 2htj_A P fimbrial regulatory p 63.3 8.8 0.0003 28.9 4.5 45 494-546 3-47 (81)
138 3r4k_A Transcriptional regulat 62.8 7 0.00024 37.1 4.7 56 396-459 9-65 (260)
139 1okr_A MECI, methicillin resis 62.7 5.5 0.00019 32.6 3.5 58 494-556 13-70 (123)
140 1okr_A MECI, methicillin resis 62.6 4.2 0.00014 33.3 2.7 51 390-442 7-61 (123)
141 1p4x_A Staphylococcal accessor 62.2 6.9 0.00024 37.0 4.4 51 391-443 156-208 (250)
142 2xrn_A HTH-type transcriptiona 61.9 9.6 0.00033 35.6 5.4 55 397-459 10-65 (241)
143 2jt1_A PEFI protein; solution 61.1 5.4 0.00019 30.1 2.8 56 487-550 4-61 (77)
144 3mq0_A Transcriptional repress 60.4 6.6 0.00023 37.6 4.0 44 397-442 34-78 (275)
145 1mkm_A ICLR transcriptional re 60.0 11 0.00039 35.2 5.6 45 396-442 11-56 (249)
146 1hsj_A Fusion protein consisti 60.0 6.2 0.00021 41.0 4.1 52 389-442 400-453 (487)
147 2pg4_A Uncharacterized protein 59.8 7 0.00024 30.4 3.4 44 395-440 17-62 (95)
148 1p4x_A Staphylococcal accessor 58.8 5.2 0.00018 37.8 2.9 52 390-443 31-84 (250)
149 1q1h_A TFE, transcription fact 58.3 8 0.00027 31.0 3.6 38 403-442 29-66 (110)
150 3i4p_A Transcriptional regulat 58.2 14 0.00046 32.1 5.4 44 395-440 5-48 (162)
151 1x3u_A Transcriptional regulat 57.6 15 0.00052 27.1 5.0 40 391-432 17-56 (79)
152 3c57_A Two component transcrip 57.5 13 0.00044 29.0 4.7 41 390-432 27-67 (95)
153 2yu3_A DNA-directed RNA polyme 56.7 16 0.00056 28.7 5.0 51 390-442 34-86 (95)
154 3b73_A PHIH1 repressor-like pr 55.6 12 0.0004 30.5 4.1 50 391-442 11-62 (111)
155 2o0y_A Transcriptional regulat 55.1 14 0.00047 34.9 5.3 44 397-442 27-71 (260)
156 2zkz_A Transcriptional repress 54.0 10 0.00035 29.8 3.5 47 392-441 26-72 (99)
157 3f6v_A Possible transcriptiona 52.8 9.4 0.00032 32.9 3.3 48 392-442 57-104 (151)
158 2vn2_A DNAD, chromosome replic 52.7 7.9 0.00027 32.3 2.8 27 521-547 59-85 (128)
159 2k4b_A Transcriptional regulat 52.2 2.4 8.2E-05 33.9 -0.6 52 390-443 32-87 (99)
160 2hzt_A Putative HTH-type trans 51.9 16 0.00055 29.1 4.5 44 396-442 17-61 (107)
161 1on2_A Transcriptional regulat 51.6 11 0.00037 31.7 3.5 40 401-442 16-55 (142)
162 2x48_A CAG38821; archeal virus 51.5 43 0.0015 22.5 6.2 24 406-429 30-53 (55)
163 3cuo_A Uncharacterized HTH-typ 51.3 14 0.00048 28.5 4.0 54 491-552 24-77 (99)
164 2x4h_A Hypothetical protein SS 51.3 16 0.00056 30.3 4.6 50 390-441 10-63 (139)
165 2qvo_A Uncharacterized protein 51.2 7.9 0.00027 30.2 2.4 47 391-439 10-60 (95)
166 2ia2_A Putative transcriptiona 51.2 16 0.00056 34.5 5.1 54 396-459 24-78 (265)
167 1uly_A Hypothetical protein PH 51.0 21 0.00073 32.0 5.6 49 391-442 18-66 (192)
168 2p7v_B Sigma-70, RNA polymeras 51.0 28 0.00096 24.9 5.3 41 391-431 6-49 (68)
169 2fbk_A Transcriptional regulat 50.9 4.3 0.00015 35.9 0.9 50 391-442 67-119 (181)
170 2g7u_A Transcriptional regulat 50.1 19 0.00065 33.9 5.3 54 396-459 17-71 (257)
171 4a0z_A Transcription factor FA 49.5 16 0.00054 32.9 4.4 39 394-432 13-51 (190)
172 1tc3_C Protein (TC3 transposas 49.4 27 0.00092 22.5 4.7 34 396-431 12-45 (51)
173 1sfx_A Conserved hypothetical 48.6 13 0.00045 29.0 3.4 48 492-547 21-68 (109)
174 2l01_A Uncharacterized protein 48.5 22 0.00075 26.7 4.2 37 397-433 14-51 (77)
175 1xma_A Predicted transcription 48.2 23 0.00079 30.1 5.1 57 490-547 40-96 (145)
176 3i4p_A Transcriptional regulat 47.7 26 0.0009 30.2 5.5 47 492-546 4-50 (162)
177 2p4w_A Transcriptional regulat 47.5 22 0.00074 32.2 5.0 48 392-442 14-61 (202)
178 2jpc_A SSRB; DNA binding prote 47.0 19 0.00064 25.0 3.7 35 396-432 4-38 (61)
179 2rnj_A Response regulator prot 46.5 14 0.00047 28.5 3.1 40 391-432 30-69 (91)
180 1tty_A Sigma-A, RNA polymerase 46.1 31 0.001 26.2 5.1 40 392-431 20-62 (87)
181 1z7u_A Hypothetical protein EF 46.0 16 0.00055 29.4 3.6 46 394-442 23-69 (112)
182 1p4w_A RCSB; solution structur 44.9 20 0.0007 28.3 3.9 40 391-432 35-74 (99)
183 3kp7_A Transcriptional regulat 44.7 10 0.00035 32.1 2.3 51 492-551 39-93 (151)
184 3t72_q RNA polymerase sigma fa 44.5 31 0.001 27.3 4.9 38 392-429 21-61 (99)
185 2qww_A Transcriptional regulat 44.5 26 0.00088 29.5 4.9 46 492-545 42-87 (154)
186 2qlz_A Transcription factor PF 43.9 19 0.00066 33.4 4.2 45 395-442 167-211 (232)
187 1oks_A RNA polymerase alpha su 43.7 26 0.0009 23.9 3.5 44 255-298 5-48 (56)
188 3df8_A Possible HXLR family tr 43.2 28 0.00094 28.0 4.6 46 394-442 28-76 (111)
189 4a5n_A Uncharacterized HTH-typ 43.0 29 0.001 29.0 4.8 44 396-442 29-73 (131)
190 2f2e_A PA1607; transcription f 42.7 31 0.0011 29.3 5.0 43 397-442 28-70 (146)
191 1ku3_A Sigma factor SIGA; heli 42.2 39 0.0013 24.5 4.9 39 392-430 12-53 (73)
192 2fsw_A PG_0823 protein; alpha- 41.9 24 0.00082 28.0 4.0 43 397-442 29-72 (107)
193 3eyy_A Putative iron uptake re 41.5 18 0.00061 30.8 3.3 58 495-555 23-80 (145)
194 1mzb_A Ferric uptake regulatio 40.2 47 0.0016 27.7 5.7 60 493-555 20-81 (136)
195 3cuq_B Vacuolar protein-sortin 40.0 67 0.0023 29.4 7.1 49 392-442 153-201 (218)
196 1bia_A BIRA bifunctional prote 39.9 51 0.0018 32.0 6.8 40 394-433 6-45 (321)
197 2xub_A DNA-directed RNA polyme 39.7 70 0.0024 33.6 8.2 117 407-546 287-407 (534)
198 1r7j_A Conserved hypothetical 39.3 68 0.0023 24.9 6.2 44 395-442 10-53 (95)
199 1yyv_A Putative transcriptiona 39.1 33 0.0011 28.5 4.6 47 393-442 35-82 (131)
200 2eth_A Transcriptional regulat 38.8 35 0.0012 28.7 4.8 48 492-547 45-92 (154)
201 3bja_A Transcriptional regulat 38.8 27 0.00091 28.6 4.0 46 493-546 35-80 (139)
202 2dk5_A DNA-directed RNA polyme 38.7 23 0.00079 27.5 3.2 45 493-545 22-68 (91)
203 3mwm_A ZUR, putative metal upt 38.3 61 0.0021 27.1 6.2 60 493-555 16-76 (139)
204 3to7_A Histone acetyltransfera 38.1 27 0.00092 33.0 4.0 29 403-431 204-232 (276)
205 2o8x_A Probable RNA polymerase 37.5 50 0.0017 23.3 4.9 39 391-431 16-55 (70)
206 3hug_A RNA polymerase sigma fa 37.3 46 0.0016 25.4 4.9 38 392-431 39-77 (92)
207 1v4r_A Transcriptional repress 37.3 19 0.00066 28.3 2.7 40 401-442 28-68 (102)
208 1nkl_A NK-lysin; saposin fold, 37.2 88 0.003 23.2 6.3 57 205-265 8-65 (78)
209 3tgn_A ADC operon repressor AD 37.2 41 0.0014 27.8 5.0 46 493-547 40-85 (146)
210 2lnb_A Z-DNA-binding protein 1 37.2 22 0.00075 26.7 2.6 36 397-432 23-59 (80)
211 1i1g_A Transcriptional regulat 36.9 26 0.00089 29.2 3.6 48 492-547 5-52 (141)
212 3cuq_B Vacuolar protein-sortin 36.2 1.2E+02 0.0041 27.6 8.2 52 496-555 159-210 (218)
213 2fe3_A Peroxide operon regulat 36.0 58 0.002 27.4 5.7 65 389-458 18-88 (145)
214 2nyx_A Probable transcriptiona 35.7 37 0.0013 29.2 4.5 46 493-546 47-92 (168)
215 2frh_A SARA, staphylococcal ac 35.2 20 0.00068 29.4 2.5 45 494-546 40-86 (127)
216 2xig_A Ferric uptake regulatio 35.0 49 0.0017 28.2 5.1 60 493-555 29-89 (150)
217 3bpv_A Transcriptional regulat 35.0 37 0.0013 27.7 4.2 47 493-547 31-77 (138)
218 2fe3_A Peroxide operon regulat 35.0 46 0.0016 28.1 4.9 60 493-555 24-84 (145)
219 1yg2_A Gene activator APHA; vi 34.8 41 0.0014 29.5 4.7 56 491-547 2-57 (179)
220 1lj9_A Transcriptional regulat 34.5 52 0.0018 27.0 5.2 47 493-547 31-77 (144)
221 2dbb_A Putative HTH-type trans 34.4 36 0.0012 28.7 4.2 47 492-546 10-56 (151)
222 2ozu_A Histone acetyltransfera 34.3 30 0.001 32.8 3.7 28 404-431 211-238 (284)
223 3bro_A Transcriptional regulat 34.3 42 0.0014 27.5 4.5 47 493-547 36-84 (141)
224 3jth_A Transcription activator 34.2 69 0.0024 24.5 5.5 52 493-553 25-76 (98)
225 2p5k_A Arginine repressor; DNA 34.0 74 0.0025 22.0 5.2 54 495-555 9-62 (64)
226 2gxg_A 146AA long hypothetical 33.9 67 0.0023 26.3 5.8 46 493-547 39-84 (146)
227 2hzt_A Putative HTH-type trans 33.5 64 0.0022 25.4 5.3 54 494-555 17-72 (107)
228 2pn6_A ST1022, 150AA long hypo 33.2 39 0.0013 28.5 4.2 47 492-546 4-50 (150)
229 2fbh_A Transcriptional regulat 33.2 55 0.0019 26.9 5.2 47 493-547 39-86 (146)
230 1jgs_A Multiple antibiotic res 32.9 39 0.0013 27.6 4.1 46 493-546 36-81 (138)
231 3cdh_A Transcriptional regulat 32.8 49 0.0017 27.7 4.8 49 491-547 43-91 (155)
232 3hsr_A HTH-type transcriptiona 32.8 22 0.00077 29.4 2.5 48 492-547 37-84 (140)
233 3cjn_A Transcriptional regulat 32.6 52 0.0018 27.8 5.0 48 492-547 53-100 (162)
234 2cfx_A HTH-type transcriptiona 32.5 33 0.0011 28.8 3.6 47 492-546 6-52 (144)
235 3hrs_A Metalloregulator SCAR; 32.5 47 0.0016 30.2 4.8 44 397-442 10-53 (214)
236 1mzb_A Ferric uptake regulatio 32.1 50 0.0017 27.5 4.6 64 389-457 14-84 (136)
237 3k0l_A Repressor protein; heli 31.6 33 0.0011 29.2 3.5 49 491-547 46-94 (162)
238 4hbl_A Transcriptional regulat 31.6 38 0.0013 28.3 3.8 48 492-547 42-89 (149)
239 2oqg_A Possible transcriptiona 31.3 37 0.0013 26.9 3.5 48 492-548 22-69 (114)
240 1ku9_A Hypothetical protein MJ 31.1 40 0.0014 27.8 3.9 47 493-547 28-75 (152)
241 2nnn_A Probable transcriptiona 31.0 32 0.0011 28.1 3.2 26 522-547 61-86 (140)
242 1oyi_A Double-stranded RNA-bin 30.8 66 0.0023 24.4 4.5 51 492-551 18-68 (82)
243 4ets_A Ferric uptake regulatio 30.8 77 0.0026 27.3 5.7 54 493-547 35-89 (162)
244 2fa5_A Transcriptional regulat 30.8 51 0.0017 27.8 4.6 48 492-547 50-97 (162)
245 3g3z_A NMB1585, transcriptiona 30.8 35 0.0012 28.3 3.4 48 492-547 32-79 (145)
246 2rdp_A Putative transcriptiona 30.7 61 0.0021 26.8 5.0 45 495-547 46-90 (150)
247 2p5v_A Transcriptional regulat 30.7 35 0.0012 29.3 3.5 46 493-546 12-57 (162)
248 3tqn_A Transcriptional regulat 30.6 82 0.0028 25.1 5.5 39 402-442 27-66 (113)
249 2cg4_A Regulatory protein ASNC 30.4 57 0.002 27.5 4.8 46 492-545 9-54 (152)
250 2w57_A Ferric uptake regulatio 30.3 46 0.0016 28.3 4.1 60 493-555 19-80 (150)
251 1l9l_A Granulysin; saposin fol 30.3 1E+02 0.0034 22.8 5.4 56 205-265 8-65 (74)
252 3oop_A LIN2960 protein; protei 30.2 47 0.0016 27.4 4.2 46 494-547 40-85 (143)
253 2ou2_A Histone acetyltransfera 30.1 45 0.0016 31.6 4.2 25 407-431 212-236 (280)
254 2b0l_A GTP-sensing transcripti 30.1 30 0.001 27.4 2.7 43 398-442 33-76 (102)
255 2o03_A Probable zinc uptake re 30.0 84 0.0029 25.8 5.6 58 495-555 15-73 (131)
256 2bv6_A MGRA, HTH-type transcri 29.9 31 0.0011 28.4 2.9 48 493-548 39-86 (142)
257 3ech_A MEXR, multidrug resista 29.9 29 0.00099 28.7 2.7 50 491-548 37-86 (142)
258 4esf_A PADR-like transcription 29.8 1.4E+02 0.0048 24.0 6.9 58 487-547 7-64 (117)
259 3b73_A PHIH1 repressor-like pr 29.7 61 0.0021 26.1 4.5 48 492-547 14-63 (111)
260 3k2z_A LEXA repressor; winged 29.4 57 0.002 29.0 4.8 50 391-442 3-57 (196)
261 3f2g_A Alkylmercury lyase; MER 29.3 70 0.0024 29.3 5.3 38 395-432 24-61 (220)
262 1j5y_A Transcriptional regulat 29.2 51 0.0017 29.1 4.4 39 395-433 23-62 (187)
263 2ia0_A Putative HTH-type trans 29.0 39 0.0013 29.5 3.5 47 492-546 18-64 (171)
264 2h09_A Transcriptional regulat 29.0 47 0.0016 28.1 4.0 39 402-442 49-87 (155)
265 3k2z_A LEXA repressor; winged 28.9 48 0.0016 29.5 4.2 56 487-550 5-61 (196)
266 2e1c_A Putative HTH-type trans 28.8 41 0.0014 29.3 3.6 47 492-546 28-74 (171)
267 2pq8_A Probable histone acetyl 28.8 35 0.0012 32.4 3.2 27 405-431 206-232 (278)
268 2o03_A Probable zinc uptake re 28.7 63 0.0022 26.6 4.6 50 391-442 9-64 (131)
269 4esb_A Transcriptional regulat 28.5 61 0.0021 26.1 4.4 55 489-546 7-61 (115)
270 2b0l_A GTP-sensing transcripti 28.4 31 0.0011 27.3 2.5 54 493-554 30-85 (102)
271 2ek5_A Predicted transcription 28.4 91 0.0031 25.7 5.5 39 402-442 22-61 (129)
272 3mzy_A RNA polymerase sigma-H 27.9 57 0.002 27.3 4.4 38 391-430 110-147 (164)
273 2w25_A Probable transcriptiona 27.9 43 0.0015 28.3 3.5 47 492-546 8-54 (150)
274 1b4a_A Arginine repressor; hel 27.9 1.1E+02 0.0036 26.2 5.9 57 493-556 7-63 (149)
275 2esh_A Conserved hypothetical 27.6 81 0.0028 25.4 5.0 55 490-547 12-69 (118)
276 3s2w_A Transcriptional regulat 27.5 29 0.00099 29.4 2.3 48 492-547 51-98 (159)
277 3bj6_A Transcriptional regulat 27.4 73 0.0025 26.4 4.9 47 493-547 42-88 (152)
278 2xig_A Ferric uptake regulatio 27.4 64 0.0022 27.4 4.5 52 389-442 23-80 (150)
279 2cyy_A Putative HTH-type trans 27.4 46 0.0016 28.1 3.6 46 493-546 9-54 (151)
280 2fsw_A PG_0823 protein; alpha- 27.4 68 0.0023 25.2 4.4 52 495-555 29-83 (107)
281 1ub9_A Hypothetical protein PH 27.1 35 0.0012 26.2 2.6 48 492-547 17-64 (100)
282 2pex_A Transcriptional regulat 26.7 38 0.0013 28.4 2.9 47 493-547 49-95 (153)
283 3by6_A Predicted transcription 26.6 82 0.0028 25.8 4.9 39 402-442 29-68 (126)
284 3hhh_A Transcriptional regulat 26.5 76 0.0026 25.6 4.6 57 487-546 9-65 (116)
285 3bdd_A Regulatory protein MARR 26.5 72 0.0025 25.9 4.7 48 492-547 32-79 (142)
286 3nrv_A Putative transcriptiona 26.5 45 0.0015 27.7 3.4 47 493-547 42-88 (148)
287 3dp7_A SAM-dependent methyltra 26.5 74 0.0025 31.3 5.5 40 400-441 42-82 (363)
288 2f2e_A PA1607; transcription f 26.4 58 0.002 27.5 4.1 51 495-555 28-80 (146)
289 3rkx_A Biotin-[acetyl-COA-carb 26.4 1.1E+02 0.0036 29.8 6.5 37 397-433 7-45 (323)
290 2pg4_A Uncharacterized protein 26.4 15 0.00052 28.4 0.2 47 498-552 22-70 (95)
291 1z6r_A MLC protein; transcript 26.4 88 0.003 31.3 6.1 63 396-460 19-84 (406)
292 1jko_C HIN recombinase, DNA-in 26.2 65 0.0022 20.8 3.6 31 398-430 14-44 (52)
293 2xvc_A ESCRT-III, SSO0910; cel 26.2 57 0.002 22.8 3.1 36 403-440 21-56 (59)
294 3f8m_A GNTR-family protein tra 26.0 66 0.0023 29.9 4.7 53 491-554 22-75 (248)
295 3l7w_A Putative uncharacterize 25.9 55 0.0019 26.0 3.6 55 488-547 6-60 (108)
296 1xsv_A Hypothetical UPF0122 pr 25.9 91 0.0031 25.0 5.0 40 391-431 26-65 (113)
297 3neu_A LIN1836 protein; struct 25.8 98 0.0033 25.2 5.3 38 403-442 32-70 (125)
298 3jw4_A Transcriptional regulat 25.8 44 0.0015 27.8 3.2 47 493-547 43-91 (148)
299 3c18_A Nucleotidyltransferase- 25.6 49 0.0017 31.6 3.7 64 485-554 216-283 (290)
300 3i53_A O-methyltransferase; CO 25.5 99 0.0034 29.7 6.1 35 406-442 37-71 (332)
301 2w57_A Ferric uptake regulatio 25.4 59 0.002 27.6 3.9 52 389-442 13-71 (150)
302 2ip2_A Probable phenazine-spec 25.3 85 0.0029 30.2 5.6 35 406-442 40-74 (334)
303 1tw3_A COMT, carminomycin 4-O- 25.0 64 0.0022 31.5 4.7 34 406-441 51-84 (360)
304 1x19_A CRTF-related protein; m 24.8 97 0.0033 30.2 6.0 43 406-458 63-105 (359)
305 2hr3_A Probable transcriptiona 24.8 65 0.0022 26.5 4.1 47 493-547 37-84 (147)
306 3clo_A Transcriptional regulat 24.7 63 0.0022 30.1 4.4 41 390-432 197-237 (258)
307 3neu_A LIN1836 protein; struct 24.6 31 0.0011 28.3 1.9 32 522-554 46-77 (125)
308 3tqn_A Transcriptional regulat 24.3 32 0.0011 27.7 1.9 31 522-553 42-72 (113)
309 2qvo_A Uncharacterized protein 24.2 32 0.0011 26.5 1.8 37 506-551 31-67 (95)
310 1l3l_A Transcriptional activat 24.1 81 0.0028 28.8 4.9 42 389-432 172-213 (234)
311 3boq_A Transcriptional regulat 23.8 43 0.0015 28.2 2.7 48 492-547 48-96 (160)
312 3szt_A QCSR, quorum-sensing co 23.5 70 0.0024 29.4 4.4 41 390-432 175-215 (237)
313 3e6m_A MARR family transcripti 23.5 40 0.0014 28.6 2.5 47 493-547 55-101 (161)
314 3edp_A LIN2111 protein; APC883 23.4 40 0.0014 31.2 2.6 33 521-554 41-73 (236)
315 1ufm_A COP9 complex subunit 4; 23.4 1.1E+02 0.0037 23.3 4.6 39 395-433 18-56 (84)
316 1t6s_A Conserved hypothetical 23.3 77 0.0026 27.5 4.2 33 400-432 15-49 (162)
317 3eco_A MEPR; mutlidrug efflux 23.2 45 0.0015 27.3 2.7 48 492-547 32-81 (139)
318 2r3s_A Uncharacterized protein 23.2 84 0.0029 30.2 5.1 34 406-441 38-71 (335)
319 1s7o_A Hypothetical UPF0122 pr 23.2 86 0.0029 25.2 4.3 39 391-431 23-62 (113)
320 2ek5_A Predicted transcription 22.6 47 0.0016 27.5 2.6 32 522-554 37-68 (129)
321 2l0k_A Stage III sporulation p 22.1 65 0.0022 25.1 3.2 33 397-430 11-43 (93)
322 1qzz_A RDMB, aclacinomycin-10- 22.0 85 0.0029 30.7 4.9 35 406-442 48-82 (374)
323 1u2w_A CADC repressor, cadmium 22.0 68 0.0023 26.0 3.5 53 493-553 44-96 (122)
324 1q1h_A TFE, transcription fact 21.7 64 0.0022 25.4 3.2 54 493-555 20-78 (110)
325 2oxl_A Hypothetical protein YM 21.6 2.3E+02 0.0078 20.3 6.1 49 489-539 7-58 (64)
326 2kko_A Possible transcriptiona 21.4 52 0.0018 26.0 2.6 54 491-553 25-78 (108)
327 2fbi_A Probable transcriptiona 21.4 39 0.0013 27.7 1.9 48 492-547 37-84 (142)
328 2k9l_A RNA polymerase sigma fa 21.3 1.3E+02 0.0046 22.1 4.7 37 395-431 34-72 (76)
329 2a61_A Transcriptional regulat 21.3 65 0.0022 26.4 3.4 47 493-547 35-81 (145)
330 3iuo_A ATP-dependent DNA helic 21.3 1.3E+02 0.0045 24.5 5.1 37 394-432 21-57 (122)
331 1y0u_A Arsenical resistance op 21.3 1.2E+02 0.0041 23.1 4.7 45 493-547 33-77 (96)
332 4ham_A LMO2241 protein; struct 21.2 40 0.0014 28.0 1.9 38 516-554 41-78 (134)
333 3by6_A Predicted transcription 21.1 41 0.0014 27.7 1.9 47 499-554 28-75 (126)
334 3mn2_A Probable ARAC family tr 21.0 1.4E+02 0.0049 23.1 5.3 27 405-431 16-42 (108)
335 3deu_A Transcriptional regulat 20.7 59 0.002 27.8 3.0 47 493-547 55-102 (166)
336 3c7j_A Transcriptional regulat 20.7 81 0.0028 29.0 4.2 40 401-442 43-82 (237)
337 3ic7_A Putative transcriptiona 20.6 45 0.0015 27.4 2.1 35 519-554 41-75 (126)
338 1u5t_B Defective in vacuolar p 20.5 1.5E+02 0.0051 25.8 5.5 36 519-555 126-161 (169)
339 2d1h_A ST1889, 109AA long hypo 20.5 98 0.0034 23.7 4.1 44 497-548 28-71 (109)
340 3fm5_A Transcriptional regulat 20.4 69 0.0023 26.6 3.3 47 493-547 41-88 (150)
341 2q0o_A Probable transcriptiona 20.2 85 0.0029 28.6 4.2 41 390-432 175-215 (236)
342 4a5n_A Uncharacterized HTH-typ 20.1 1.5E+02 0.0051 24.5 5.2 54 494-555 29-84 (131)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=8.3e-107 Score=907.84 Aligned_cols=538 Identities=34% Similarity=0.595 Sum_probs=503.9
Q ss_pred CccccHHhhhHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHccccCCCcHhHHHHHHHHHHHHHHHHHH
Q 008709 3 QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATEL 82 (557)
Q Consensus 3 ~l~~Y~~~fE~~~L~~t~~yY~~~~~~~i~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~l 82 (557)
++++|.+.||++||+.|..||+.+|+.|+.+.++++||++|+.++++|.+||..||+++|.++|.++|.++||.+|.+.|
T Consensus 208 ~l~vY~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l 287 (760)
T 1ldj_A 208 TLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIF 287 (760)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhHHHHhhccCCHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCccchHHHHHHHH
Q 008709 83 LEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKII 162 (557)
Q Consensus 83 l~~~~~gl~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 162 (557)
+ +||..||++++.++|++||+||++++++++.|+..|++||.+.|.+++...... ...++..||+.|+
T Consensus 288 ~----~~~~~ll~~~~~~dL~~my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~--------~~~~~~~~V~~ll 355 (760)
T 1ldj_A 288 H----TEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA--------ALNDPKMYVQTVL 355 (760)
T ss_dssp H----HHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS--------GGGCHHHHHHHHH
T ss_pred H----HHHHHHHHcCCHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcc--------cccCHHHHHHHHH
Confidence 5 489999999999999999999999999999999999999999999999764211 1246889999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcC------CCCCCcHHHHHHHHHHHhhcCCCCCCChHHHHHhhhhHh
Q 008709 163 ELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA------VGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVV 236 (557)
Q Consensus 163 ~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~------~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~ 236 (557)
++|++|+.++.+||++|+.|..++++||+.|+|.+ .+..++||+||+|||.+||+|. .+.++++++..+++++
T Consensus 356 ~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~ 434 (760)
T 1ldj_A 356 DVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVM 434 (760)
T ss_dssp HHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 2346899999999999999875 3467899999999999
Q ss_pred hhhccccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q 008709 237 KLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQN 316 (557)
Q Consensus 237 ~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~ 316 (557)
.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++|+.+||.+||++|++|++|+..|++++..|++++.++
T Consensus 435 ~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~-- 512 (760)
T 1ldj_A 435 VVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS-- 512 (760)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987651
Q ss_pred CCCCcceEEEEeecCCCCCCCCCCCcCCHhHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHH
Q 008709 317 AHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQA 396 (557)
Q Consensus 317 ~~~~~~f~~~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~~~~R~L~w~~~lg~~~l~~~~~~~~~~l~~s~~Qa 396 (557)
...+++|+|.|||+++||..+..++.||++|..+++.|++||..+|+||+|+|.+++|+|+|++.|++++++++||++||
T Consensus 513 ~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa 592 (760)
T 1ldj_A 513 EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQM 592 (760)
T ss_dssp CCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHH
T ss_pred cCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHH
Confidence 12468999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCC-----CCCCCCCCCeEEEccCCCCCcceeeecC
Q 008709 397 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP-----NTKTISQSDHFEFNSKFTDRMRRIKIPL 471 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~-----~~~~~~~~~~~~~N~~f~~~~~~i~i~~ 471 (557)
+||++||+.+.+|+++|++.||++.++++++|++|+ +.+||.+.| +++.+.+++.|.+|.+|++++.+|+|+.
T Consensus 593 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~ 670 (760)
T 1ldj_A 593 AILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINV 670 (760)
T ss_dssp HHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCC
T ss_pred HHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecC
Confidence 999999999999999999999999999999999997 568998554 7788999999999999999999999986
Q ss_pred CCch----hhhhhHHhHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 472 PPVD----ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 472 ~~~~----e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+... |...+.+.+++||+..|+||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+|++
T Consensus 671 ~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~ 750 (760)
T 1ldj_A 671 PMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 750 (760)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred ccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCC
Confidence 5432 344567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEecC
Q 008709 548 ENPNMFRYLA 557 (557)
Q Consensus 548 ~~~~~y~Yia 557 (557)
+|+++|+|+|
T Consensus 751 ~~~~~y~YlA 760 (760)
T 1ldj_A 751 GEKDTYSYLA 760 (760)
T ss_dssp SSTTEEEECC
T ss_pred CCCcceeeCC
Confidence 9999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.6e-105 Score=897.26 Aligned_cols=533 Identities=38% Similarity=0.678 Sum_probs=502.8
Q ss_pred CccccHHhhhHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHccccCCCcHhHHHHHHHHHHHHHHHHHH
Q 008709 3 QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATEL 82 (557)
Q Consensus 3 ~l~~Y~~~fE~~~L~~t~~yY~~~~~~~i~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~l 82 (557)
.|++|.+.||++||+.|..||+.+++.|+.+.++++|+.+|+.++++|.+||..||+++|.++|.++|+++||.+|...|
T Consensus 223 ~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~~~~~Li~~~~~~l 302 (759)
T 2hye_C 223 DLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAI 302 (759)
T ss_dssp HTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHHTTTCSHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHhhccCCHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCccchHHHHHHHH
Q 008709 83 LEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKII 162 (557)
Q Consensus 83 l~~~~~gl~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 162 (557)
++ +|+..||++++.++|++||+|+++++++++.++..|++||.+.|.+++.+. ..+..||+.|+
T Consensus 303 l~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~-------------~~~~~~V~~ll 366 (759)
T 2hye_C 303 LQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINP-------------EKDKDMVQDLL 366 (759)
T ss_dssp HH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCG-------------GGTTTHHHHHH
T ss_pred HH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCc-------------ccHHHHHHHHH
Confidence 86 489999999999999999999999999999999999999999999998542 12457999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhcCCCCCCChHHHHHhhhhHhhhhccc
Q 008709 163 ELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYI 242 (557)
Q Consensus 163 ~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l 242 (557)
++|++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+||+|. .+.++++++..+++++.||+|+
T Consensus 367 ~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~~~-k~~~e~e~e~~L~~i~~lf~~i 443 (759)
T 2hye_C 367 DFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRAGN-KEATDEELERTLDKIMILFRFI 443 (759)
T ss_dssp HHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSSCG-GGCCSTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999999999999853 5789999999999999865 3467889999999999999999
Q ss_pred cChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCcc
Q 008709 243 SDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGID 322 (557)
Q Consensus 243 ~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~ 322 (557)
++||+|+.+|+++||+|||.+++.+.|.|+.||++|+.+||.+||++|++|++|+..|++++..|++++...+. ..+++
T Consensus 444 ~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~-~~~~~ 522 (759)
T 2hye_C 444 HGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-SGPID 522 (759)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754321 24689
Q ss_pred eEEEEeecCCCCCCCCCCCcCCHhHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhh
Q 008709 323 LSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLF 402 (557)
Q Consensus 323 f~~~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~~~~~R~L~w~~~lg~~~l~~~~~~~~~~l~~s~~Qa~iLl~F 402 (557)
|+|.|||+++||.++..++.+|++|..+++.|++||..+|+||+|+|.+++|+|+|+++|++++++++||++||+||++|
T Consensus 523 ~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllF 602 (759)
T 2hye_C 523 LTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMF 602 (759)
T ss_dssp EEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHh
Confidence 99999999999999888999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCCCCcceeeecCCCc----hhhh
Q 008709 403 NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPV----DERK 478 (557)
Q Consensus 403 n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~----~e~~ 478 (557)
|+.+.+|++||++.||++.++++++|++|+++|.+||.+.|+++.+.+++.|.+|.+|+++..+|+|+.++. +|..
T Consensus 603 n~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~ 682 (759)
T 2hye_C 603 NEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQV 682 (759)
T ss_dssp TSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHH
T ss_pred cCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhh
Confidence 999999999999999999999999999999878999999999999999999999999999999999985432 3455
Q ss_pred hhHHhHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 008709 479 KIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 557 (557)
Q Consensus 479 ~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 557 (557)
.+.+.+.+||+..||||||||||++|+|+|++|+.+|+++++ |.|++.+||+|||.||+||||+|+++|+++|+|+|
T Consensus 683 ~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 683 STTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 677889999999999999999999999999999999999998 99999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=2.9e-81 Score=647.01 Aligned_cols=356 Identities=32% Similarity=0.510 Sum_probs=323.9
Q ss_pred CCcHHHHHHHHHHHhhcCC-CCCCChHHHHHhhhhHhhhhccccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 008709 201 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLK 279 (557)
Q Consensus 201 ~~~~e~La~y~d~~l~~~~-~~~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~Lk 279 (557)
.+.||+||+|||.+||+|. ..+.++++++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++|+
T Consensus 4 ~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK 83 (382)
T 3dpl_C 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR 83 (382)
T ss_dssp CCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 4789999999999999863 245689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC--hhhHhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCCcCCHhHHHHHHHHHH
Q 008709 280 QQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYK-SSDLNLPSEMVKCVEVFKG 356 (557)
Q Consensus 280 ~~~G~--~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~f~~~VLs~~~WP~~~-~~~~~lP~~l~~~~~~F~~ 356 (557)
+||. +||++|++|++|+..|++++..|++++...+....+++|+|.|||+++||..+ ..++.+|++|..+++.|++
T Consensus 84 -~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~ 162 (382)
T 3dpl_C 84 -EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE 162 (382)
T ss_dssp -HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHH
T ss_pred -HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHH
Confidence 9997 99999999999999999999999998764432223689999999999999874 5689999999999999999
Q ss_pred HHhhcCCCceEEeccCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHhhhcc
Q 008709 357 FYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCA 434 (557)
Q Consensus 357 ~Y~~~~~~R~L~w~~~lg~~~l~~~~~~~~~~l~~s~~Qa~iLl~Fn~~--~~~t~~el~~~~~i~~~~l~~~L~~L~~~ 434 (557)
||..+|+||+|+|.|++|+|+|++.+++++++|+||++||+||++||+. +.+|++||++.||++.++|+++|++|++.
T Consensus 163 fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 163 FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp HHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999985 79999999999999999999999999762
Q ss_pred ---cceeeecCCCC---CCCCCCCeEEEccCCCCC-----cceeeecCCC------chhhhhhHHhHHHhhHHhHhHHHH
Q 008709 435 ---KYKILLKEPNT---KTISQSDHFEFNSKFTDR-----MRRIKIPLPP------VDERKKIVEDVDKDRRYAIDAALV 497 (557)
Q Consensus 435 ---k~~iL~~~~~~---~~~~~~~~~~~N~~f~~~-----~~~i~i~~~~------~~e~~~~~~~~~~~r~~~i~A~IV 497 (557)
|++||.++|.+ +++.++|.|.+|.+|++. .++++|+.++ ..+.+++.+.+++||+..||||||
T Consensus 243 ~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIV 322 (382)
T 3dpl_C 243 PKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII 322 (382)
T ss_dssp TTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEe
Confidence 56899887753 567889999999999862 2567776532 124456778899999999999999
Q ss_pred HhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 008709 498 RIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 557 (557)
Q Consensus 498 RimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 557 (557)
||||+||+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+||++|+++|+|+|
T Consensus 323 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 323 QIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred hhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=301.82 Aligned_cols=199 Identities=27% Similarity=0.469 Sum_probs=173.8
Q ss_pred CccccHHhhhHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHccccCCCcHhHHHHHHHHHHHHHHHHHH
Q 008709 3 QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATEL 82 (557)
Q Consensus 3 ~l~~Y~~~fE~~~L~~t~~yY~~~~~~~i~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~l 82 (557)
++++|.+.||++||+.|..||+.+|+.|+...++++||++|+.++++|.+||..||+++|.++|.++|.++||.+|.+.|
T Consensus 197 ~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~kL~~~~e~~LI~~h~~~l 276 (410)
T 4ap2_B 197 GRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTI 276 (410)
T ss_dssp SSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHhhccCCHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCccchHHHHHHHH
Q 008709 83 LEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKII 162 (557)
Q Consensus 83 l~~~~~gl~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 162 (557)
++++++||..||++++.++|++||+||++++++++.|+..|++||.+.|.+++.+... ...|..||+.|+
T Consensus 277 l~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~----------~~~~~~~V~~LL 346 (410)
T 4ap2_B 277 VEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE----------GKNPVDYRQGLD 346 (410)
T ss_dssp HTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHH
T ss_pred HHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcccc----------ccChHHHHHHHH
Confidence 9877789999999999999999999999999999999999999999999999976532 135789999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Q 008709 163 ELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNI 214 (557)
Q Consensus 163 ~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~ 214 (557)
+++++|+.++.+||++|+.|..++++||+.|+|.+. +.||+||+|||.-
T Consensus 347 ~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~ 395 (410)
T 4ap2_B 347 DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQ 395 (410)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHccCc
Confidence 999999999999999999999999999999999874 6779999999974
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=99.97 E-value=6.6e-32 Score=278.29 Aligned_cols=185 Identities=26% Similarity=0.506 Sum_probs=125.4
Q ss_pred CccccHHhhhHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHccccCCCcHhHHHHHHHHHHHHHHHHHH
Q 008709 3 QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATEL 82 (557)
Q Consensus 3 ~l~~Y~~~fE~~~L~~t~~yY~~~~~~~i~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~l 82 (557)
++++|.+.||++||+.|..||+.+|+.|+...++++||++|+.++++|.+||..||+++|.++|.++|.++||.+|.+.|
T Consensus 180 ~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~l 259 (364)
T 4eoz_B 180 GRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTI 259 (364)
T ss_dssp SSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHhhccCCHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCccchHHHHHHHH
Q 008709 83 LEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKII 162 (557)
Q Consensus 83 l~~~~~gl~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 162 (557)
++++++||..||++++.++|++||+||++++++++.++..|++||.+.|.+++.+... ..+|..||+.|+
T Consensus 260 l~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~----------~~~~~~~V~~LL 329 (364)
T 4eoz_B 260 VEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE----------GKNPVDYRQGLD 329 (364)
T ss_dssp HTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC-------------------------------
T ss_pred HhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccc----------cCChHHHHHHHH
Confidence 9877789999999999999999999999999999999999999999999999976532 135789999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcC
Q 008709 163 ELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA 197 (557)
Q Consensus 163 ~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~ 197 (557)
++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 330 ~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 330 DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999964
No 6
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=269.13 Aligned_cols=179 Identities=28% Similarity=0.553 Sum_probs=167.1
Q ss_pred CccccHHhhhHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHccccCCCcHhHHHHHHHHHHHHHHHHHH
Q 008709 3 QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATEL 82 (557)
Q Consensus 3 ~l~~Y~~~fE~~~L~~t~~yY~~~~~~~i~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~l~~~LI~~~~~~l 82 (557)
.|++|.+.||++||+.|..||+.+|+.|+.+.++++||++|+.++++|.+||..||+++|.+++.++|.++||.+|.+.|
T Consensus 174 ~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~l 253 (354)
T 4a64_A 174 DLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAI 253 (354)
T ss_dssp HTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhHHHHhhccCCHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCccchHHHHHHHH
Q 008709 83 LEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKII 162 (557)
Q Consensus 83 l~~~~~gl~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~I~~l~ 162 (557)
+. +|+..||++++.++|++||+|+++++++++.++..|++||.+.|.+++.+. ..+..||+.|+
T Consensus 254 l~---~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~-------------~~~~~~V~~LL 317 (354)
T 4a64_A 254 LQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINP-------------EKDKTMRQELD 317 (354)
T ss_dssp HH---HHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSC-------------CSSSCHHHHHH
T ss_pred HH---HHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCc-------------cchHHHHHHHH
Confidence 83 699999999999999999999999999999999999999999999998642 23567999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcC
Q 008709 163 ELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA 197 (557)
Q Consensus 163 ~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~ 197 (557)
++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 318 ~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~ 352 (354)
T 4a64_A 318 DFKDKVDHIIDICFLKNEKFINAMKEAFETFINKR 352 (354)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999976
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=99.97 E-value=2.9e-30 Score=268.38 Aligned_cols=183 Identities=23% Similarity=0.485 Sum_probs=171.7
Q ss_pred CccccHHhhhHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHccccC----CCcHhHHHHHHHHHHHHHH
Q 008709 3 QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYLH----SSSEPKLVEKVQHELLVVY 78 (557)
Q Consensus 3 ~l~~Y~~~fE~~~L~~t~~yY~~~~~~~i~~~~~~~Yl~~~~~~l~~E~~r~~~~l~----~~t~~~l~~~l~~~LI~~~ 78 (557)
++++|.+.||++||++|..||+.+|+.|+.+.++++||++|+.++++|.+||..||+ ++|.++|.++|.++||.+|
T Consensus 194 ~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h 273 (391)
T 2wzk_A 194 KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSF 273 (391)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGG
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHhhhHHHHhhccCCHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCccchHHHH
Q 008709 79 ATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLI 158 (557)
Q Consensus 79 ~~~ll~~~~~gl~~ll~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~I 158 (557)
.+.|++ |+..||++++.++|++||+||+++++|++.|+..|++||.+.|.+++....... ..+|..||
T Consensus 274 ~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~~~~~~--------~~~~~~~V 341 (391)
T 2wzk_A 274 KETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETI--------TTDSEKYR 341 (391)
T ss_dssp HHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHGGGT--------TTCHHHHH
T ss_pred HHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHhccccc--------cCCHHHHH
Confidence 999985 699999999999999999999999999999999999999999999976432111 24688999
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcC
Q 008709 159 RKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA 197 (557)
Q Consensus 159 ~~l~~l~~~~~~li~~~F~~~~~f~~~l~~af~~~~n~~ 197 (557)
+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 342 ~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~ 380 (391)
T 2wzk_A 342 EQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDA 380 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999975
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.93 E-value=6.5e-27 Score=185.41 Aligned_cols=82 Identities=32% Similarity=0.689 Sum_probs=79.2
Q ss_pred hhhhhhHHhHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 475 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 475 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
+|..++.+.+.+||...|+||||||||++|+|+|++|+.+|+++++++|+|++.+||+|||.||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 467778899999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred ecC
Q 008709 555 YLA 557 (557)
Q Consensus 555 Yia 557 (557)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.93 E-value=3.4e-27 Score=182.60 Aligned_cols=76 Identities=49% Similarity=0.772 Sum_probs=73.4
Q ss_pred HhHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 008709 482 EDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 557 (557)
Q Consensus 482 ~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 557 (557)
+.+++||...|+||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||.||+||||+|+++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.92 E-value=8.5e-27 Score=186.87 Aligned_cols=82 Identities=49% Similarity=0.748 Sum_probs=76.9
Q ss_pred hhhhhHHhHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 476 ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 476 e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
|..++.+.+.+||...||||||||||++|+|+|++|+.+|.++++++|.|++.+||+|||.||+||||+|+++|+++|+|
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 44456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 008709 556 LA 557 (557)
Q Consensus 556 ia 557 (557)
+|
T Consensus 91 ~A 92 (92)
T 1iuy_A 91 VA 92 (92)
T ss_dssp C-
T ss_pred cC
Confidence 98
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=4.3e-26 Score=185.28 Aligned_cols=81 Identities=56% Similarity=0.837 Sum_probs=76.7
Q ss_pred hhhhhhHHhHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 475 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 475 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
+|..++.+.+.+||.+.||||||||||++|+|+|++|+.+|.++++ |.|++.+||+|||.||+||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEE
Confidence 3455567889999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ecC
Q 008709 555 YLA 557 (557)
Q Consensus 555 Yia 557 (557)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred Eec
Confidence 998
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.13 E-value=0.18 Score=37.45 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=48.2
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 008709 494 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 557 (557)
Q Consensus 494 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 557 (557)
...|...|.+|.+..++|-. .|..+.+++..+|+.|.+.|-|.--=+|++.|+||+
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 34477889999998888764 488899999999999999999998888899999985
No 13
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=89.41 E-value=0.68 Score=36.55 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=41.7
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..+..||..+.+++.+|..||++.+|++...+.++|..|. +.+++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 45778888888777789999999999999999999999996 45777654
No 14
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=89.29 E-value=0.37 Score=36.75 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=34.6
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCC
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTI 448 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~ 448 (557)
...|+.||++.+|++...+.+.|..|. +.++|.+.+.+..+
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGV 63 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCCc
Confidence 689999999999999999999999997 45888877655433
No 15
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=88.44 E-value=0.21 Score=53.69 Aligned_cols=136 Identities=9% Similarity=0.098 Sum_probs=49.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcc---cceeeecCCCCCCCCCCCeEEEccCCCCCcceee
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCA---KYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIK 468 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~---k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~ 468 (557)
+..+..||....+...+|..+|++.+|++...+.+.|..|+.. ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 4566778877777789999999999999999999999999741 14677653 36788877642211100
Q ss_pred ecCCCchhhhhh-HHhHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 469 IPLPPVDERKKI-VEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 469 i~~~~~~e~~~~-~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+.. ....+ ...+ .....+..|+..++.++.++-.++.+.+ ..+...+...|..|++.|-|++..
T Consensus 500 -~~~---~~~~~~~~~~---~~~~~~~~I~~~l~~~g~it~~di~~l~--------~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 500 -EPS---PFSPVRYLST---DQAELTNAAMLWLSEVGDLATSDLMAMC--------GVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -ccc---cccccccccC---ChhHHHHHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEEeC
Confidence 000 00000 0000 1234567899999999999998887633 245667799999999999999876
Q ss_pred CCCC
Q 008709 548 ENPN 551 (557)
Q Consensus 548 ~~~~ 551 (557)
..++
T Consensus 565 ~gr~ 568 (583)
T 3lmm_A 565 GGRS 568 (583)
T ss_dssp ----
T ss_pred CCCc
Confidence 5443
No 16
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=87.75 E-value=0.63 Score=35.42 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=40.3
Q ss_pred HHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 008709 396 AATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 458 (557)
Q Consensus 396 a~iLl~Fn~~~---~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 458 (557)
..||..+.+.. .+|..||++.+|++...+.++|..|. +.+++...+. ....|.++.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g~-----~~~~W~i~~ 75 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEECS-----SSCEEEECC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCceEecC
Confidence 55655544444 89999999999999999999999996 3467765432 125666543
No 17
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=87.44 E-value=1.3 Score=35.02 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=39.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 443 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 443 (557)
+.....||....+ +.+|+.||++.+|++...+.++|..|. +.+++....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~ 70 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRK 70 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 3456667777766 789999999999999999999999996 457887553
No 18
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.77 E-value=0.9 Score=38.65 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=44.4
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 389 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+.+|+.|..||......+ +|..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~ 84 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETS 84 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC-
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEec
Confidence 456889999999998888 9999999999999999999999997 45788764
No 19
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=86.49 E-value=0.66 Score=39.39 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=44.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~ 83 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRT 83 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEec
Confidence 567999999998888899999999999999999999999997 44788765
No 20
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=86.09 E-value=0.88 Score=34.81 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=43.4
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCCHHHHHHHHHhhhcccceeeecC
Q 008709 389 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~--~~~t~~el~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+.++.-+..||..+.+. ..+|++||++.+ +++...+-++|..|.. .+++.+.
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~--~Glv~~~ 71 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD--AGIVTRH 71 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCeEEE
Confidence 34567888899888765 589999999999 9999999999999974 5777654
No 21
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=85.94 E-value=0.81 Score=38.97 Aligned_cols=50 Identities=12% Similarity=0.103 Sum_probs=43.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 78 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQ 78 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 477899999888777789999999999999999999999997 34788764
No 22
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.63 E-value=0.69 Score=36.99 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||..+...+.+|..+|++.+|++...+.++|..|.. .+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~--~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLK--RGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 5678888998887667899999999999999999999999973 4777653
No 23
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=85.56 E-value=1.6 Score=34.48 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=43.2
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
+..+..||..+ .+.+|+.||++.+|++...+.++|..|. ..+++.... +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC--------CEEEECCC
Confidence 34566677666 4569999999999999999999999997 457887642 26777654
No 24
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=85.45 E-value=0.74 Score=36.30 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=42.4
Q ss_pred EEEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 389 LIVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~--~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
..++..|..||....+ .+.++..||++.++++...+.++|..|.. -+++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIkr 68 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 68 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEE
Confidence 4567789999977765 56899999999999999999999999974 366653
No 25
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=84.98 E-value=0.37 Score=38.71 Aligned_cols=60 Identities=15% Similarity=0.276 Sum_probs=44.4
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 557 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 557 (557)
+..|++++-....++..||...+.. .-.++...|...|+.|.++|||+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 4556666666667888888764432 123577889999999999999999874 56888865
No 26
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=84.64 E-value=0.65 Score=39.48 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=41.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~ 84 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRE 84 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeec
Confidence 3678899999888887899999999999999999999999997 44788765
No 27
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=84.53 E-value=1.4 Score=37.91 Aligned_cols=50 Identities=6% Similarity=0.149 Sum_probs=43.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~--~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA--RGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 4678999999888888999999999999999999999999973 4777654
No 28
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=84.52 E-value=2.1 Score=32.50 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=41.0
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 397 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
.||..+.+.+.+|..||++.+|++...+.+.|..|.. .+++...+.+. ..+..|.++.+
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~--~GlI~~~~~~~--gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEK--AGMVQRSPLRR--GMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEEECCSS--SSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEeccCC--CCcEEEEEChh
Confidence 4555555556799999999999999999999999974 46776432211 12345656544
No 29
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=84.43 E-value=1.6 Score=33.57 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=40.7
Q ss_pred HHHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 395 QAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 395 Qa~iLl~Fn~~~---~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
+..||..+.+.. .+|..+|++.+|++...+.++|..|. +.+++...+. ....|.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeCc
Confidence 445665554444 89999999999999999999999996 3467765431 1256666543
No 30
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=84.42 E-value=0.81 Score=34.92 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.6
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 398 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 398 iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
|+...++.+.++++||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~--~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES--MGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 566677888999999999999999999999999974 4666665
No 31
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=84.40 E-value=1 Score=38.45 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=43.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.++..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE--KKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 46778999998888878999999999999999999999999974 4788764
No 32
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=84.08 E-value=1.4 Score=33.77 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=33.5
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 397 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.||.+..... .|+.||++.+|++...+.++|..|.. -+++.+.
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~--eG~I~~~ 63 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQR--SAMVYSS 63 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHH--HTSSEEC
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC
Confidence 3444444444 99999999999999999999999963 4677664
No 33
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=83.85 E-value=0.85 Score=39.14 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~ 88 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRE 88 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC-
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeC
Confidence 567899999888777899999999999999999999999997 45788765
No 34
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.73 E-value=1.5 Score=37.15 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=42.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|+.||.... .+.+|..+|++.+|++...+.++|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEE--MGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHH--CCCEEee
Confidence 4678899998887 78899999999999999999999999973 4777654
No 35
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=83.60 E-value=0.89 Score=35.46 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 398 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 398 iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
|+...++.+.++++||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~--~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEA--MGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHT--TCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 566677888999999999999999999999999973 4666665
No 36
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=83.55 E-value=2.7 Score=36.78 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=43.0
Q ss_pred HHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 394 YQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 394 ~Qa~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
+.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++..... +++.|.+..+
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 89 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIRG-----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECS-----TTCEEEECSC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEecC-----CCCceEecCC
Confidence 44445455443 3479999999999999999999999996 5688875421 3456877654
No 37
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=83.42 E-value=0.72 Score=39.19 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=43.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~ 84 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVRE 84 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeecc
Confidence 467899999888777889999999999999999999999997 34788765
No 38
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=83.31 E-value=1 Score=37.58 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=42.6
Q ss_pred EEEcHHHHHHHHhhcCCCC--cCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 389 LIVSTYQAATLLLFNTSDR--LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~~~--~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+-++..|..||..+.+.+. +|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 3457789889877765554 9999999999999999999999997 34777653
No 39
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.28 E-value=1.2 Score=37.76 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~F-n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||..+ ...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~--~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES--QGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCeeec
Confidence 456788888887 6778899999999999999999999999973 4777654
No 40
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=83.02 E-value=0.88 Score=38.07 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=42.1
Q ss_pred EcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~--~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||...... +.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 86 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKK 86 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCB
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 567888888776655 789999999999999999999999997 34788765
No 41
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=82.70 E-value=0.97 Score=37.95 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||.....++.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~--~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEE--SGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 4678999998887778899999999999999999999999973 4777653
No 42
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=82.69 E-value=1.4 Score=33.54 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=45.3
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 556 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 556 (557)
+..|.+++-..+.++..+|...+-.. -..+...+...|+.|.++|||+|..+ ...+.|-
T Consensus 11 e~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 11 ELEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 45566667667789999999877542 23577889999999999999999874 4577774
No 43
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=82.68 E-value=1.3 Score=38.13 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++..|..||......+.+|..+|++.++++...+.+.+..|.. .+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLIS--LGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEe
Confidence 5778999998887778899999999999999999999999973 477776
No 44
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=82.63 E-value=1.2 Score=34.03 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=39.4
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 494 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 494 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
..|...++.++.++.++|.. .|..+...|.+-|+.|.++|+|+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35777888889999888874 5889999999999999999999997
No 45
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.60 E-value=1.1 Score=37.75 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=41.8
Q ss_pred EcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~--~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||...... +.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~ 80 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRY 80 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeec
Confidence 567888888777655 489999999999999999999999997 34787764
No 46
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=82.55 E-value=2.9 Score=35.80 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=41.5
Q ss_pred HHHHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 395 QAATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 395 Qa~iLl~Fn~~-~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
++.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++..... +++.|.+..+
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 73 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVRG-----AKGGYQLRVP 73 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECSS-----SSSEEEESSC
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecCC-----CCCCeeecCC
Confidence 34444444433 469999999999999999999999996 5688764321 3456877543
No 47
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=82.18 E-value=2.1 Score=35.52 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=38.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++.+..||..+...+.+|+.+|++.+|++...+-++|..|. ..+++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 34455677666645679999999999999999999999997 45777654
No 48
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=82.17 E-value=1.4 Score=37.73 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~--~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQR--AGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCeeec
Confidence 5678999998887777899999999999999999999999973 4777654
No 49
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=82.06 E-value=1.5 Score=36.91 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=41.6
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~--~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||......+ .+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~--~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI--KKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH--CCCEEee
Confidence 4678888887776655 799999999999999999999999973 4777654
No 50
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.02 E-value=1.2 Score=35.63 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=39.3
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|.. .+++...
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~--~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE--LGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEee
Confidence 35567666655433 66899999999999999999999999973 4777654
No 51
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=81.94 E-value=2.8 Score=31.43 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=39.6
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 008709 398 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 458 (557)
Q Consensus 398 iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 458 (557)
++..+.+++..|..+|+..+|++...+.++|-+|. +.+.+...|. ....|.+|.
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~~-----~PP~W~~~~ 73 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVPS-----NPPKWFKNY 73 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEECC-----SSCEEEECT
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCCC-----CCCCccCCC
Confidence 35566777779999999999999999999999996 3355554432 234555543
No 52
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=81.91 E-value=1 Score=39.21 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 93 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKA 93 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEec
Confidence 467899999888777899999999999999999999999997 34788764
No 53
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=81.79 E-value=1.6 Score=38.38 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+++.+.+.-+....+|.++|++.+|+|...+.+.|..|. +.+++...
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTGT 61 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 445555555555679999999999999999999999996 56777543
No 54
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=81.39 E-value=1.2 Score=37.38 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVC--KGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHH--CCCEEec
Confidence 4678898998887777899999999999999999999999973 4777654
No 55
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=81.39 E-value=1.5 Score=37.94 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~glv~r~ 96 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLE--RGFIRRE 96 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeee
Confidence 5678999998887778899999999999999999999999973 4788754
No 56
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=80.91 E-value=3.3 Score=32.83 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 008709 393 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 458 (557)
Q Consensus 393 ~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 458 (557)
+....||....+ +..++.||++.+|++...+.++|..|. ..+++.....+. ...|.++.
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~ 81 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTE 81 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECc
Confidence 344556665555 569999999999999999999999996 457887654332 33455554
No 57
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=80.51 E-value=1.1 Score=38.93 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~ 100 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARS 100 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 467899999888777789999999999999999999999997 44788765
No 58
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=80.42 E-value=1.4 Score=37.06 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.++..|..||......+.+|..+|++.+|++...+.+++..|.. .+++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~--~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEE--SGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 35678899998887777899999999999999999999999974 4677654
No 59
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=80.09 E-value=1.3 Score=32.53 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeee
Q 008709 395 QAATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 395 Qa~iLl~Fn~~-~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
.-.||..+.+. ..+|..||++.+|++...+.++|..|.. .+++.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~--~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK--EDRVS 56 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEe
Confidence 34566666543 4799999999999999999999999974 34554
No 60
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=80.06 E-value=1.5 Score=38.42 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||..... .+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~ 101 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQ 101 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEee
Confidence 45688888887765 5679999999999999999999999997 45788765
No 61
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=80.02 E-value=2.4 Score=32.37 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHH-HHHHHHHhhhcccceeeecC
Q 008709 393 TYQAATLLLFNTSDRLSYSEIMTQLNLTHD-DLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 393 ~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~-~l~~~L~~L~~~k~~iL~~~ 442 (557)
..+--||.+....+..|..+|++.+|++.. .+.++|..|. +-+++.+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~ 59 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEec
Confidence 345567766666678999999999999999 9999999996 44677654
No 62
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=80.01 E-value=1.5 Score=37.59 Aligned_cols=50 Identities=26% Similarity=0.286 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQA--AGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHH--CCCEeec
Confidence 4678999998887778899999999999999999999999973 4777654
No 63
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=79.61 E-value=1.3 Score=38.94 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 43 lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 567899999888777789999999999999999999999997 34777654
No 64
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=79.49 E-value=0.95 Score=38.01 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR--DGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH--CCCeeec
Confidence 5678999998887777899999999999999999999999974 4777654
No 65
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=79.49 E-value=1.2 Score=37.47 Aligned_cols=50 Identities=8% Similarity=0.117 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~--~glv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDK--RGLIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 4678888998887767899999999999999999999999973 4677653
No 66
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.22 E-value=1.6 Score=36.97 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||..... .+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~--~glv~r~ 83 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER--GGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCEeeC
Confidence 57788999988876 77899999999999999999999999973 4777654
No 67
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=79.22 E-value=1.6 Score=37.89 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||......+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQA--DGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 4678999998887778899999999999999999999999973 4777653
No 68
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=79.04 E-value=1.6 Score=34.43 Aligned_cols=50 Identities=6% Similarity=0.039 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHH----HHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEI----MTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el----~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+| ++.++++...+.+.|..|.. .+++.+.
T Consensus 6 lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~--~gli~r~ 59 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ--EGFVKER 59 (99)
T ss_dssp SBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 56789999988888888999999 89999999999999999973 4777653
No 69
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.89 E-value=1.2 Score=37.62 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~--~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEA--DGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5678999998887777899999999999999999999999974 4777653
No 70
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=78.68 E-value=1.4 Score=34.35 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=38.7
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 495 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 495 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.|...++.++.++.++|.. .|..+...|.+-|+.|.++|+|+|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4777778888888888764 58899999999999999999999973
No 71
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=78.57 E-value=1.8 Score=32.93 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=42.7
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+|..|..||...-+.+.+|..||++.++ ++...+.+.|..|.. .+++.+.
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~--kGlv~r~ 60 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK--KGALNHH 60 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH--CCCeEEE
Confidence 35788999998877777899999999996 688999999999974 4787765
No 72
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=78.47 E-value=1.6 Score=37.14 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMER--NGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 4678889998887777899999999999999999999999974 4677653
No 73
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=78.44 E-value=2.7 Score=35.54 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=37.9
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn-~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..+|.... ..+++|..+|++.+|++...+.++|..|.. .+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~--~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE--LGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 3455665554332 346799999999999999999999999973 4788764
No 74
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=78.42 E-value=1.3 Score=37.43 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=42.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~--~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE--QGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 4667888888777777899999999999999999999999974 4777654
No 75
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.32 E-value=1.3 Score=37.98 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 84 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQ--KNLIART 84 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeec
Confidence 5678999998887777899999999999999999999999974 4777654
No 76
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=78.13 E-value=1.1 Score=37.87 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.+|++...+.+++..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ--VDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 5678999998887777899999999999999999999999974 4777654
No 77
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.08 E-value=1.8 Score=37.28 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.++++...+.+.+..|.. .+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEK--RGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5678999998887767899999999999999999999999973 4777654
No 78
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=77.72 E-value=1.1 Score=38.90 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=41.8
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345777888777767889999999999999999999999997 34787764
No 79
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=77.48 E-value=1.5 Score=37.15 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~glv~r~ 87 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQ--QGLITRK 87 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHH--HTSEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHH--CCCEEec
Confidence 4678999998887767899999999999999999999999974 4777764
No 80
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=77.44 E-value=5.4 Score=33.21 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=35.9
Q ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 405 SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 405 ~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
...+|..+|++.+|+|...+.+.|..|. +.+++...+. .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecCC-----CCCceEeCCC
Confidence 4579999999999999999999999997 4578765421 2356776554
No 81
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=77.34 E-value=1.7 Score=37.24 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=40.5
Q ss_pred EcHHHHHHHHhh--cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~F--n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|+.||... ++.+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~ 84 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKR 84 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEe
Confidence 456777777554 455679999999999999999999999997 45788765
No 82
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.06 E-value=1.3 Score=37.32 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||......+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~--~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER--DGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5678999998887777899999999999999999999999973 4677653
No 83
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=76.90 E-value=2.2 Score=36.42 Aligned_cols=50 Identities=12% Similarity=0.275 Sum_probs=40.7
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn-~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||.... ..+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~ 87 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRT 87 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 4568888887765 44578999999999999999999999997 44788764
No 84
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=76.79 E-value=1.6 Score=37.04 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=42.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+|+.|..||......+. |..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~--~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEA--KGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 356789999988877777 9999999999999999999999973 4777654
No 85
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=76.60 E-value=2.3 Score=37.75 Aligned_cols=66 Identities=8% Similarity=0.094 Sum_probs=43.0
Q ss_pred cCCceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 371 YSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 371 ~~lg~~~l~~~~~~~~~~l~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++.+++.+...- .....++..+..||........+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~--~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEe
Confidence 344555555432 123457788889998888778999999999999999999999999963 466653
No 86
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=76.51 E-value=4.4 Score=34.87 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
+.+.+.+.-+....+|..+|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~r------G~GGy~L~~~ 74 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNR------GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEcc------CCCceEeCCC
Confidence 444444554445579999999999999999999999997 567876432 1345666554
No 87
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=76.34 E-value=1 Score=38.45 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=36.1
Q ss_pred EcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~--~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|+.||...... +.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~ 90 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERR 90 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEee
Confidence 467888888777654 789999999999999999999999997 44788764
No 88
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=76.29 E-value=3.6 Score=35.39 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=41.6
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|+.||..... .+..+..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~ 79 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRH 79 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEee
Confidence 56789999887754 4568889999999999999999999997 45788765
No 89
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=75.75 E-value=4.7 Score=42.74 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=84.9
Q ss_pred CCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCCCCcceeeecCCCchhhhhhHHh
Q 008709 404 TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVED 483 (557)
Q Consensus 404 ~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~e~~~~~~~ 483 (557)
.++.+|+.+|...|+++...++.+|-.|++ .+++.-.+.+. ....|.+|.+ .-..+++.|- . -.
T Consensus 30 ~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQ--h~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk--------~-l~ 93 (534)
T 2xub_A 30 RTGSQPLRVIAHDTGTSLDQVKKALCVLVQ--HNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR--------Y-IY 93 (534)
T ss_dssp HHCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH--------H-HH
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHHh--cCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH--------H-HH
Confidence 457899999999999999999999999974 46665332110 1234444432 0111111110 0 01
Q ss_pred HHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccC----CCCChHHHHHHHHhhhhhccccccCC
Q 008709 484 VDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRM----FKPDIKAIKKRMEDLITRDYLERDKE 548 (557)
Q Consensus 484 ~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~----F~~~~~~ik~~Ie~Liereyi~r~~~ 548 (557)
..+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 94 ~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 94 TTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 112222233477888888899999999999988765321 12578899999999999999999874
No 90
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=75.68 E-value=2.1 Score=38.44 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~--~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||..... .+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 67889999977764 5689999999999999999999999997 44788764
No 91
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=75.21 E-value=2.8 Score=33.67 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=37.6
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..+..||..+. .+.+|+.||++.+|++...+.++|..|. ..+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 345566666555 4568999999999999999999999997 45777643
No 92
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=75.05 E-value=1.7 Score=37.27 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=42.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
.+|..|..||... ..+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 3577899999888 77899999999999999999999999997 3478775
No 93
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=75.04 E-value=2.9 Score=33.03 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=43.5
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHH-HhCCCHHHHHHHHHhhhcccceeee
Q 008709 389 LIVSTYQAATLLLFNTSDRLSYSEIMT-QLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~~~~t~~el~~-~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
..++..|+.||......+..|..+|++ ..+++...+-+++.+|. +-+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 356789999998887777999999999 99999999999999997 447775
No 94
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=74.98 E-value=2.1 Score=33.62 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++.+..||..+...+.+|+.+|++.+|++...+.++|..|.. .+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~--~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLER--NGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 556777887665556899999999999999999999999973 467754
No 95
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=74.95 E-value=2.2 Score=34.54 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..+..||..+ ..+.+|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 35566777766 44579999999999999999999999996 45777653
No 96
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=74.35 E-value=5.7 Score=30.26 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.2
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhc
Q 008709 398 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 433 (557)
Q Consensus 398 iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~ 433 (557)
|--+.|+.+.+|+.+|++.+|++.+++..+|-.|..
T Consensus 13 VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 445567777999999999999999999999999974
No 97
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=74.30 E-value=4.2 Score=34.82 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=40.4
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
+..+..||....+...+|..+|++.+|++...+.+.|..|.. .+++..
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEK--DGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEE
Confidence 345677888888888899999999999999999999999973 467754
No 98
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=74.04 E-value=7.2 Score=36.37 Aligned_cols=152 Identities=13% Similarity=0.180 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec-CCCCCC-CCCCCeEEEccCCC---------
Q 008709 393 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK-EPNTKT-ISQSDHFEFNSKFT--------- 461 (557)
Q Consensus 393 ~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~-~~~~~~-~~~~~~~~~N~~f~--------- 461 (557)
.....||.+..+ +.+|+.+|++.+|++...+.++|..|. +.+++.. ...+.. -.+.-.|.++....
T Consensus 12 ~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~~~l~~~~ 88 (232)
T 2qlz_A 12 KVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQSYEKEERFIGPTKKYYKISIAKSYVFTLTPEM 88 (232)
T ss_dssp HHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEEEEECC-----CEEEEEECCCEEEEEEEETTE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeeecCCCCCCccEEEEEccchhhHHHHHHHH
Confidence 445566666654 679999999999999999999999997 4577765 222211 11233455554311
Q ss_pred --C--------CcceeeecCCCchhh--------------hhhHHhHHHhhHHhHhHHHHHhhccCCC-----CChhHHH
Q 008709 462 --D--------RMRRIKIPLPPVDER--------------KKIVEDVDKDRRYAIDAALVRIMKSRKV-----LGHQQLV 512 (557)
Q Consensus 462 --~--------~~~~i~i~~~~~~e~--------------~~~~~~~~~~r~~~i~A~IVRimK~~k~-----l~~~~L~ 512 (557)
. +...+.|+....++. .+...+..+ -...+++.+-.+|+..|. +.-.+.-
T Consensus 89 ~w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~le~ig~~~~~ 167 (232)
T 2qlz_A 89 FWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLE-AFKTIESYRSSLMRKIKEAYLKEIGDMTQL 167 (232)
T ss_dssp EEEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 0 000111111100000 001111122 235666777777765432 1112222
Q ss_pred HHHH----------HHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 008709 513 SECV----------EQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 548 (557)
Q Consensus 513 ~~v~----------~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 548 (557)
..+. ..+......+.+.|...+..|.+.|.|+|..+
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~ 213 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKIIND 213 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETT
T ss_pred HHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecC
Confidence 2222 33334566788899999999999999987654
No 99
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.86 E-value=5.3 Score=30.25 Aligned_cols=59 Identities=3% Similarity=0.106 Sum_probs=44.4
Q ss_pred HHHHHhhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 494 AALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 494 A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
..|...+... +.++..+|...+.+.. ...+...|-+.|+.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 4566777665 6899999998776532 246888999999999999999997654344444
No 100
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=73.76 E-value=2.4 Score=36.02 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=41.4
Q ss_pred EEEEcHHHHHHHHhhcC-----CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 388 ELIVSTYQAATLLLFNT-----SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 388 ~l~~s~~Qa~iLl~Fn~-----~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
.+-+|.-++.+|+++-. ....|.++|++.+|++...+.+.|+.|.. -++|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 45677888888866543 34689999999999999999999999985 366654
No 101
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=73.58 E-value=2.1 Score=39.19 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~ 95 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFS 95 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 467899999887776789999999999999999999999997 34788765
No 102
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=73.52 E-value=1.7 Score=37.49 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhh-cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~F-n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||... ...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~--~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK--DGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH--HTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 577899999888 5677899999999999999999999999973 4788764
No 103
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=72.67 E-value=7 Score=33.38 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
+.+.+.+.-+.. . |.++|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 12 l~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~r------G~GGy~Lar~ 67 (145)
T 1xd7_A 12 IHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSRA------GVPGASLKKD 67 (145)
T ss_dssp HHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECCS------SSSSCEESSC
T ss_pred HHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEeec------CCCCceecCC
Confidence 344444554444 5 999999999999999999999996 568886542 1345666554
No 104
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=72.45 E-value=3.9 Score=35.08 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++..+..||..+.+.+.+|+.+|++.+|++...+.+.|..|.. .+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLES--RGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4567778888777777899999999999999999999999973 466653
No 105
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=71.70 E-value=5.6 Score=32.61 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=38.5
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++.+..||..+.+ +..++.||++.+|++...+.++|..|. ..+++...
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 67 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVAT 67 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 4566677766664 468999999999999999999999996 35777654
No 106
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=71.22 E-value=4.1 Score=34.10 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=40.1
Q ss_pred EEEcHHHHHHHHhh---cC-C-CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 389 LIVSTYQAATLLLF---NT-S-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 389 l~~s~~Qa~iLl~F---n~-~-~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+-++.-|+.||+.+ ++ + ...|.++|++.+|++...+.++|+.|.. .++|.+.
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~--kGlI~~~ 84 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQ--KGMIAIE 84 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHH--TTSSEEC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 44667777776554 33 2 2489999999999999999999999974 4788765
No 107
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=70.91 E-value=3 Score=34.40 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=44.5
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 556 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 556 (557)
+..|.+++-....++..+|...+.. ...++...+...|+.|.++|||+|..+ ...+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~-~r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKS-ENIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeC-CCeEEEE
Confidence 5566677766778888888876642 123577889999999999999999875 3467764
No 108
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=70.90 E-value=2.2 Score=34.48 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3446655554 678999999999999999999999996 45787654
No 109
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=70.53 E-value=10 Score=27.94 Aligned_cols=57 Identities=7% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCC
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFT 461 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~ 461 (557)
.-.+.-+|.++.-||+.+|...|+=|+..|+.+|...+ ++.+.+. -.+.|.+-.+|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34567789999999999999999999999999998763 5554421 235566665553
No 110
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=70.30 E-value=3.3 Score=39.00 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 567888899887666789999999999999999999999997 45777653
No 111
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=69.82 E-value=4.5 Score=32.07 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=41.3
Q ss_pred EEcHHHHHHHHhhcCC------CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 390 IVSTYQAATLLLFNTS------DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~------~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
-+++.|..+|..+.+. ..++..+|++.++++...+.+.|..|. +.+++..
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r 68 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADV 68 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEe
Confidence 3678899998766543 679999999999999999999999996 4467754
No 112
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.63 E-value=5 Score=34.13 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=40.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++..+-.||..+.+...+|..||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES--FGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 3456677887777777899999999999999999999999963 466653
No 113
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=69.25 E-value=4 Score=34.64 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.9
Q ss_pred hccCCCCChHHHHHHHHhhhhhccccc
Q 008709 519 LSRMFKPDIKAIKKRMEDLITRDYLER 545 (557)
Q Consensus 519 l~~~F~~~~~~ik~~Ie~Liereyi~r 545 (557)
++.+...+...|-+.|..|+++|||+|
T Consensus 57 LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 57 LQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 345677899999999999999999999
No 114
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=69.07 E-value=4.7 Score=35.64 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=41.6
Q ss_pred EEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeee
Q 008709 388 ELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 388 ~l~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
...++..+..||........+|+.+|++.+|++...+.+.|..|.. .+++.
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~--~G~I~ 62 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE--RGVIE 62 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 3446677888888888778899999999999999999999999963 46664
No 115
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.33 E-value=5.4 Score=33.02 Aligned_cols=58 Identities=14% Similarity=0.320 Sum_probs=42.8
Q ss_pred hHhHHHHHhhccCCC--CChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCC--ceEec
Q 008709 491 AIDAALVRIMKSRKV--LGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPN--MFRYL 556 (557)
Q Consensus 491 ~i~A~IVRimK~~k~--l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~--~y~Yi 556 (557)
..+..|.+++..... ++..+|-..+ ..+...+-+.|+.|.++|||.|.. .|+. .|.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 446778888776665 8999887644 247788999999999999999853 3333 35554
No 116
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=67.47 E-value=4 Score=34.49 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
+..+..||..+..++.+|+.+|++.+|++...+.+.|..|.. .+++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE--KGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEec
Confidence 345667787777777899999999999999999999999973 467754
No 117
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=67.29 E-value=5.4 Score=34.24 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=40.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeee
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
++..+..||....+...+|+.+|++.+|++...+.+.|..|.. .+++.
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 53 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ--AGIIT 53 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--cCCcc
Confidence 4566778888887778899999999999999999999999963 46665
No 118
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=67.05 E-value=3.9 Score=30.92 Aligned_cols=53 Identities=11% Similarity=0.292 Sum_probs=41.5
Q ss_pred hHHHHHhhccCC---CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 008709 493 DAALVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 553 (557)
Q Consensus 493 ~A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 553 (557)
+-.|..+|+... .++..+|-..+ ..+...|.++|..|.+.|+|++.+..+..|
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~L--------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHH--------CCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 455778888888 88888887533 356788999999999999999987666544
No 119
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=66.90 E-value=4.6 Score=33.09 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=37.8
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++....||....+ +.+++.+|++.+|++...+-++|..|. +.+++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3445566666654 678999999999999999999999996 45788654
No 120
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=66.79 E-value=7.3 Score=27.62 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHh-----CCCHHHHHHHHHhh
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQL-----NLTHDDLVRLLHSL 431 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~-----~i~~~~l~~~L~~L 431 (557)
++.|+.+.+..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44455556666789999999999 99999999999855
No 121
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=66.76 E-value=7.1 Score=30.55 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=40.9
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCc
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNM 552 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 552 (557)
+..|...+...+.++..+|...+. ..+..+...+-+.|..|.++|||+|..+.+..
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la----~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~ 65 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVN----AEFPMSTATFYDAKKFLIQEGFVKERQERGEK 65 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHH----HHcCCCHHHHHHHHHHHHHCCCEEEEecCCce
Confidence 445556666667788877765443 34667889999999999999999997654333
No 122
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=66.73 E-value=5.6 Score=34.05 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=40.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeee
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
++..+..||..+.+...+|..+|++.+|++...+.+.+..|.. .+++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK--LGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH--HTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEE
Confidence 4566778888888878999999999999999999999999963 46665
No 123
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=66.59 E-value=10 Score=27.66 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=33.4
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
.+|.-|..|+.++ ....|..||++.+|++...+..++..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3567788888777 3457999999999999999998887764
No 124
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=66.07 E-value=3.7 Score=33.83 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+|..|..||...-+.+++|..||++.++ ++...+...|..|.. -+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~--kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK--KEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH--CCceEEE
Confidence 46789999998887778899999999997 579999999999973 4788764
No 125
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=65.62 E-value=8.5 Score=29.89 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=35.3
Q ss_pred EEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 388 ELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 388 ~l~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
...+|.-+..||.++- .++|..||++.+|++...++.++..+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456788888887776 468999999999999999999998775
No 126
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=65.29 E-value=2.4 Score=37.03 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=38.7
Q ss_pred EcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~--~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|+.||..... .+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeec
Confidence 46688888877765 4589999999999999999999999997 44788764
No 127
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=65.08 E-value=7.3 Score=32.81 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcC-CCCcCHHHHHHHhC----CCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNT-SDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~-~~~~t~~el~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..|..||...-+ .+.+|..||++.++ ++...+.+.|..|.. -+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~--kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK--KNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 57889999988876 57899999999998 799999999999974 4787764
No 128
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=65.07 E-value=5.9 Score=33.95 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=40.7
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++..+..||....+...+|+.+|++.+|++...+.+.|..|.. .+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH--HTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 4566777888787778899999999999999999999999963 466653
No 129
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=64.75 E-value=7.5 Score=33.16 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=36.9
Q ss_pred EcHHHHHHHHhhcCC-----CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeee
Q 008709 391 VSTYQAATLLLFNTS-----DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~-----~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
+|..|+.||...... +.+|..+|++.++++...+.+.+..|.. .+++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~--~glVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR--DGLVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH--TTSBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEE
Confidence 467898888776543 3599999999999999999999999973 36663
No 130
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=64.52 E-value=6.8 Score=33.02 Aligned_cols=60 Identities=10% Similarity=0.147 Sum_probs=43.3
Q ss_pred HhHHHHHhhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 008709 492 IDAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 556 (557)
Q Consensus 492 i~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 556 (557)
-+..|++++-. ...++..+|...+... -..+...|...|+.|.++|||+|..+ ...+.|.
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~ 70 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYA 70 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEec-CCeEEEE
Confidence 35667777766 5789988888765321 23577889999999999999999875 4466663
No 131
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=64.47 E-value=7 Score=33.93 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=40.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++..+..||....+...+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED--AGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEee
Confidence 4566777887777777899999999999999999999999963 466653
No 132
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=64.44 E-value=7.6 Score=29.63 Aligned_cols=53 Identities=11% Similarity=0.292 Sum_probs=41.6
Q ss_pred hHHHHHhhccCC---CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 008709 493 DAALVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 553 (557)
Q Consensus 493 ~A~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 553 (557)
+-.|..+|+... .++..+|-..+ ..+...|.++|..|.+.|+|++.+..+..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L--------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 555778888888 89988887633 367788999999999999999876555443
No 133
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=64.04 E-value=22 Score=28.91 Aligned_cols=59 Identities=8% Similarity=0.028 Sum_probs=51.1
Q ss_pred hhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 487 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 487 ~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
-++-.++.+|..++.. +.+.--+|...+.+...+.+.++...+-..|..|.++|+|++.
T Consensus 8 ~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 8 MLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 3456788899999974 7889999999998877767889999999999999999999986
No 134
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=63.89 E-value=7.5 Score=31.65 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 393 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 393 ~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
..|..||..+.+ +..|+.+|++.+|++...+-++|..|.. .+++..
T Consensus 32 ~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 32 PSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp HHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 467777777666 6799999999999999999999999974 466653
No 135
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=63.76 E-value=9.2 Score=31.56 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
.+..||..+.+ +..++.+|++.+|++...+-++|..|.. .+++..
T Consensus 47 ~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~ 91 (122)
T 1r1t_A 47 NRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSY 91 (122)
T ss_dssp HHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 45556655554 5789999999999999999999999974 567754
No 136
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=63.51 E-value=11 Score=28.43 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=32.9
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
+|.-|..|+.++ ...+|..||++.+|++...+..++....
T Consensus 22 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 22 LTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567777788776 3568999999999999999998887664
No 137
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=63.29 E-value=8.8 Score=28.89 Aligned_cols=45 Identities=4% Similarity=0.025 Sum_probs=34.8
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 494 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 494 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
..|.+.+...+.++..+|... +..+...+.+.|..|.+.|+|++.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 346667777777888777753 345778899999999999999964
No 138
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=62.83 E-value=7 Score=37.06 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=43.7
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 396 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 396 a~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
..||.+|.+ ...+|+.||++.+|++...+-+.|..|.. .++|.+.+. +..|.+...
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~--~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE--AGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEcCC------CCcEEcCHH
Confidence 357788886 46899999999999999999999999974 578876532 356666544
No 139
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.72 E-value=5.5 Score=32.55 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=42.4
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 008709 494 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 556 (557)
Q Consensus 494 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 556 (557)
..|..++...+.++..+|...+-.. ...+.+.+-..|+.|.++|||+|..+| ..+.|+
T Consensus 13 ~~vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 13 WEVMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 4455555556789999998876543 235678899999999999999998764 455554
No 140
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.64 E-value=4.2 Score=33.35 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=42.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+|..|..||......+.+|..+|++.++ ++...+.+.|..|.. .+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~--~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYK--KGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH--CCCeEEE
Confidence 46788999998776677899999999999 789999999999973 4777653
No 141
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=62.22 E-value=6.9 Score=36.95 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCC
Q 008709 391 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 443 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~--~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 443 (557)
+|..|..||......+ .+|..||++.++++...+.+.+..|. +.+++.+.+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 5678999997776554 59999999999999999999999997 447887653
No 142
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=61.93 E-value=9.6 Score=35.58 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=42.2
Q ss_pred HHHHhhcCCC-CcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 397 ATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 397 ~iLl~Fn~~~-~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
.||..|.+.+ .+|+.||++.+|++...+.+.|..|. +.+++.+.+. +..|.+...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 5777787654 79999999999999999999999997 4578876432 245666443
No 143
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=61.14 E-value=5.4 Score=30.15 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=39.2
Q ss_pred hhHHhHhHHHHHhhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCC
Q 008709 487 DRRYAIDAALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENP 550 (557)
Q Consensus 487 ~r~~~i~A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~ 550 (557)
+|...|=..|-+-++.+ ...+..||...+ ..+...|..-|..|.++|||+|+..-+
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~l--------gvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAA--------GLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 34455555555555554 677877777533 336777999999999999999987543
No 144
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=60.44 E-value=6.6 Score=37.61 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHHHhhcCC-CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 397 ATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 397 ~iLl~Fn~~-~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.||.+|.+. ..+|+.||++.+|++...+.+.|..|.. .+.|.+.
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~ 78 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARS 78 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEC
Confidence 578888765 4799999999999999999999999974 5788765
No 145
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=60.03 E-value=11 Score=35.24 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=36.9
Q ss_pred HHHHHhhcCCC-CcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 396 AATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 396 a~iLl~Fn~~~-~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
..||..|.+.. .+|+.||++.+|++...+.+.|..|.. .+++.+.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRK 56 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEC
Confidence 35777776544 799999999999999999999999974 5777653
No 146
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=59.98 E-value=6.2 Score=40.97 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=45.3
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 389 LIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~--~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.-+|..|..||....++ +.+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~ 453 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKK 453 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 44688999999888777 889999999999999999999999997 45788765
No 147
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=59.76 E-value=7 Score=30.43 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCC-CcCHHHHHHHhCCCHHH-HHHHHHhhhcccceeee
Q 008709 395 QAATLLLFNTSD-RLSYSEIMTQLNLTHDD-LVRLLHSLSCAKYKILL 440 (557)
Q Consensus 395 Qa~iLl~Fn~~~-~~t~~el~~~~~i~~~~-l~~~L~~L~~~k~~iL~ 440 (557)
+..+|..+...+ .+|..+|++.+|++... +-+.+..|.. .+++.
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~--~Glv~ 62 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR--AGLVK 62 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH--TTSEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH--CCCee
Confidence 445666666555 79999999999999999 9999999973 35664
No 148
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=58.77 E-value=5.2 Score=37.82 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=43.6
Q ss_pred EEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCC
Q 008709 390 IVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 443 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~--~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 443 (557)
.+|..|..||....+ .+++|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 367899999988866 3589999999999999999999999997 447887653
No 149
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=58.27 E-value=8 Score=31.01 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=31.5
Q ss_pred cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 403 NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 403 n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
..++.+|..+|++.+|++...+.++|..|.. .+++...
T Consensus 29 ~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 4555799999999999999999999999974 4677543
No 150
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=58.24 E-value=14 Score=32.13 Aligned_cols=44 Identities=9% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeee
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
...||....+...+|+.+|++.+|++...+.+.++.|.. .+++.
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~ 48 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIR 48 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCee
Confidence 446787788888999999999999999999999999963 46665
No 151
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=57.64 E-value=15 Score=27.07 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=32.0
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
+|.-|..|+.++ ...+|..||++.+|++...+..++....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4568999999999999999988887654
No 152
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.50 E-value=13 Score=29.03 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=34.0
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
.+|.-|..|+.++ ...+|..||++.+|++...++.++....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3577788888777 4568999999999999999998887764
No 153
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.72 E-value=16 Score=28.71 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=42.4
Q ss_pred EEcHHHHHHHHhhcC--CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 390 IVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~--~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.++..|..|+-...+ .+.++..||...++++...+.++|..|.. -+++...
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~V 86 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKAV 86 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEEe
Confidence 467899999988866 56799999999999999999999999974 2566543
No 154
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=55.62 E-value=12 Score=30.51 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHh--CCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQL--NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~--~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+....-.||.+..+...+|+.+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 345667788777766789999999999 999999999999997 45788753
No 155
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=55.08 E-value=14 Score=34.92 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=36.8
Q ss_pred HHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 397 ATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 397 ~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+.
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~ 71 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSR 71 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEC
Confidence 56777764 46899999999999999999999999974 5788764
No 156
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=53.98 E-value=10 Score=29.81 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=34.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
++....||..+-..++.++.||++.+|++...+-++|..|. .. ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhh
Confidence 44555666333334579999999999999999999999996 34 5543
No 157
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=52.82 E-value=9.4 Score=32.91 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=38.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++....||.... .+.+|+.+|++.+|++...+-++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 356667777666 4579999999999999999999999996 45787653
No 158
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=52.68 E-value=7.9 Score=32.28 Aligned_cols=27 Identities=4% Similarity=0.129 Sum_probs=23.7
Q ss_pred cCCCCChHHHHHHHHhhhhhccccccC
Q 008709 521 RMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 521 ~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.+...+...|.++|..|+++|||+|..
T Consensus 59 ~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 59 ERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356779999999999999999999964
No 159
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=52.22 E-value=2.4 Score=33.87 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=41.0
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhC----CCHHHHHHHHHhhhcccceeeecCC
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKEP 443 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~~ 443 (557)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.. .+++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~--KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVK--KEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH--TTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH--CCCEEEEe
Confidence 35667778887776667899999999997 468899999999973 47877653
No 160
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=51.91 E-value=16 Score=29.10 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHhhhcccceeeecC
Q 008709 396 AATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 396 a~iLl~Fn~~~~~t~~el~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
..||.... .+..++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34554444 4679999999999 999999999999997 45788754
No 161
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=51.60 E-value=11 Score=31.65 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=32.6
Q ss_pred hhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 401 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 401 ~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+....+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~--~Glv~r~ 55 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLDK--DEYLIYE 55 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 334456799999999999999999999999973 4777653
No 162
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=51.49 E-value=43 Score=22.53 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHH
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLH 429 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~ 429 (557)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999887663
No 163
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=51.31 E-value=14 Score=28.52 Aligned_cols=54 Identities=4% Similarity=0.107 Sum_probs=40.5
Q ss_pred hHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCc
Q 008709 491 AIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNM 552 (557)
Q Consensus 491 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 552 (557)
..+..|.+.+.....++..+|...+ ..+...+-+.|..|.+.|+|++..+.+..
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l--------~is~~tvs~~l~~L~~~glv~~~~~~r~~ 77 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRIT--------GLSASATSQHLARMRDEGLIDSQRDAQRI 77 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSCE
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCEE
Confidence 3456677778777688888877533 35778899999999999999988754433
No 164
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=51.26 E-value=16 Score=30.33 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=37.4
Q ss_pred EEcHHHHHHHHhh----cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 390 IVSTYQAATLLLF----NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 390 ~~s~~Qa~iLl~F----n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
.++..|..+|..+ ...+.+|+.+|++.+|++...+.++|..|.. .+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~--~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE--KGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH--CCCEEe
Confidence 4455565555433 3456899999999999999999999999973 467764
No 165
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=51.25 E-value=7.9 Score=30.15 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=35.3
Q ss_pred EcHHHHHHHHhhcC-CCC---cCHHHHHHHhCCCHHHHHHHHHhhhcccceee
Q 008709 391 VSTYQAATLLLFNT-SDR---LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKIL 439 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~-~~~---~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL 439 (557)
++.-+..||+.+.. .+. +|..+|++.++++...+.+.|..|.. .+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE--AKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH--TTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CcCc
Confidence 34566666665532 233 99999999999999999999999973 3555
No 166
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=51.22 E-value=16 Score=34.52 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 396 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 396 a~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
..||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~--------~~~Y~Lg~~ 78 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD--------GSAFWLTPR 78 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES--------SSEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec--------CCEEEEcHH
Confidence 357788864 46899999999999999999999999974 4777653 356776544
No 167
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=50.99 E-value=21 Score=31.96 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=39.3
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+..+..||.+..+ +.+|..+|++.+|++...+.++|..|. +.+++...
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 34566677766664 689999999999999999999999996 34777654
No 168
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.99 E-value=28 Score=24.90 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=29.5
Q ss_pred EcHHHHHHHHhhc---CCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 391 VSTYQAATLLLFN---TSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn---~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
+|.-|-.|+.+.- .....|..||++.+|++...+...+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3555555554432 2457999999999999999988876544
No 169
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=50.94 E-value=4.3 Score=35.91 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=40.6
Q ss_pred EcHHHHHHHHhhcCCC---CcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~---~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++..|..||......+ .+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEec
Confidence 4678888887776544 39999999999999999999999997 34777754
No 170
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=50.06 E-value=19 Score=33.86 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=42.2
Q ss_pred HHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 008709 396 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 459 (557)
Q Consensus 396 a~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 459 (557)
..||..|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC--------CCEEEEcHH
Confidence 457788875 45799999999999999999999999974 4777653 256776544
No 171
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=49.53 E-value=16 Score=32.87 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
-|..||.+.++++.+|++||++.+|++...+++-|.-|.
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 467788889999999999999999999999999999885
No 172
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.42 E-value=27 Score=22.50 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 396 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 396 a~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
..|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 345555544 4799999999999999998877543
No 173
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=48.61 E-value=13 Score=29.05 Aligned_cols=48 Identities=15% Similarity=0.342 Sum_probs=37.7
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.+..|...+...+.++..+|...+ ..+...+-+.|..|.++|||+|..
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 456667777666778888877643 457888999999999999999965
No 174
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=48.50 E-value=22 Score=26.65 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=32.1
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCC-CHHHHHHHHHhhhc
Q 008709 397 ATLLLFNTSDRLSYSEIMTQLNL-THDDLVRLLHSLSC 433 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~~i-~~~~l~~~L~~L~~ 433 (557)
.|--+.|+.+.+|+.+|++.+|+ +.+++..+|-.|..
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 34556677789999999999999 99999999999974
No 175
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=48.20 E-value=23 Score=30.14 Aligned_cols=57 Identities=5% Similarity=0.050 Sum_probs=48.3
Q ss_pred HhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 490 YAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 490 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
..++.+|..++.. +.+.-.+|...+.+.....+.++...+-..|..|.++|||++..
T Consensus 40 g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 40 GYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 4567888888864 77888999999887776667899999999999999999999863
No 176
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=47.73 E-value=26 Score=30.24 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=40.7
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
+|..|.+.+.....++..+|-..+ ..+...+.++|+.|.+.|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 577899999999999999888643 46889999999999999999974
No 177
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=47.47 E-value=22 Score=32.24 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=38.9
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
++.+..||.+.. .+++++.+|++.+|++...+-.+|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456667776665 3579999999999999999999999997 45788754
No 178
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=47.04 E-value=19 Score=25.05 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 396 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 396 a~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
..|+.++- ..+|..||++.+|++...+..++....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444443 357999999999999999999887764
No 179
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=46.52 E-value=14 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=31.5
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
+|.-|..|+.++ ...+|..||++.+|++...++.++....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355666677666 3468999999999999999998887664
No 180
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=46.09 E-value=31 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=28.2
Q ss_pred cHHHHHHH-Hhh--cCCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 392 STYQAATL-LLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 392 s~~Qa~iL-l~F--n~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
|.-|-.|+ +.| .+...+|+.||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455555 333 33357999999999999999888766543
No 181
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=45.99 E-value=16 Score=29.39 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHhhhcccceeeecC
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
....||....+ +.+++.+|++.+ |++...+.++|..|. +.+++.+.
T Consensus 23 ~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 23 WKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp THHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 44455544443 579999999999 999999999999997 45788754
No 182
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=44.86 E-value=20 Score=28.27 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=32.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
+|.-|..||.++- ..+|..||++.+|++...++..+..+.
T Consensus 35 Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 35 LSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp CCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5667777776664 468999999999999999998887764
No 183
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=44.69 E-value=10 Score=32.06 Aligned_cols=51 Identities=12% Similarity=0.263 Sum_probs=34.8
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc----cCCCCC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER----DKENPN 551 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r----~~~~~~ 551 (557)
-+..|...+ ..+.++..+|-..+ ..+.+.+-+.|..|.++|||+| ++.|+.
T Consensus 39 ~q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 39 EQSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HHHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 355666777 77888888887643 2456678999999999999998 666643
No 184
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=44.48 E-value=31 Score=27.28 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=26.9
Q ss_pred cHHHHHHH-Hhhc--CCCCcCHHHHHHHhCCCHHHHHHHHH
Q 008709 392 STYQAATL-LLFN--TSDRLSYSEIMTQLNLTHDDLVRLLH 429 (557)
Q Consensus 392 s~~Qa~iL-l~Fn--~~~~~t~~el~~~~~i~~~~l~~~L~ 429 (557)
|.-|-.|+ +.|- +.+.+|++||++.+|++...++..+.
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44444444 4442 34679999999999999998877553
No 185
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=44.48 E-value=26 Score=29.47 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=34.6
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 545 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 545 (557)
-+..|...+...+.++..+|...+ ..+.+.+-..|..|.++|||+|
T Consensus 42 ~~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 345566666666777777776533 3477889999999999999999
No 186
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=43.92 E-value=19 Score=33.40 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
-+.|+..... ++.|.++|++.+|+++..+..+|..|. +.+++.+.
T Consensus 167 ~~~l~~~l~~-~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLLN-GRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHHHS-SEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 3444444444 578999999999999999999999996 56777543
No 187
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=43.71 E-value=26 Score=23.86 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHH
Q 008709 255 KLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLT 298 (557)
Q Consensus 255 ~L~~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~ 298 (557)
-+.+|++.......+.-..|+..|+..-|........+|+.-+-
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46778887766677788889999988888888888888887553
No 188
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=43.23 E-value=28 Score=27.97 Aligned_cols=46 Identities=11% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCCcC--HHHHHHHh-CCCHHHHHHHHHhhhcccceeeecC
Q 008709 394 YQAATLLLFNTSDRLS--YSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t--~~el~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
....||....+ +..+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 28 wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 28 YTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp THHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34456655543 4455 99999999 999999999999997 45788754
No 189
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=42.99 E-value=29 Score=28.96 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=35.4
Q ss_pred HHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHhhhcccceeeecC
Q 008709 396 AATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 396 a~iLl~Fn~~~~~t~~el~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+.||.... .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 34555444 4679999999999 999999999999997 45788764
No 190
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=42.67 E-value=31 Score=29.26 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=34.1
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 397 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.||.... .+..++.||++.+|++...+.++|..|. +.+++.+.
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~ 70 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAV 70 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 3443333 3578999999999999999999999997 45788765
No 191
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=42.23 E-value=39 Score=24.52 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=27.4
Q ss_pred cHHHHHHH-Hhh--cCCCCcCHHHHHHHhCCCHHHHHHHHHh
Q 008709 392 STYQAATL-LLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHS 430 (557)
Q Consensus 392 s~~Qa~iL-l~F--n~~~~~t~~el~~~~~i~~~~l~~~L~~ 430 (557)
+.-|-.|+ +.| .+....|+.||++.+|++...+...+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44455555 333 2235799999999999999988876543
No 192
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=41.93 E-value=24 Score=28.00 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=33.7
Q ss_pred HHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHhhhcccceeeecC
Q 008709 397 ATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.||.... .+..++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3544443 4679999999999 599999999999997 45788654
No 193
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.47 E-value=18 Score=30.80 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=41.0
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 495 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 495 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
+|.++|...+-++.++|...+.+.. ..++...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 23 ~Il~~l~~~~h~ta~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y 80 (145)
T 3eyy_A 23 LVLEAVDTLEHATPDDILGEVRKTA---SGINISTVYRTLELLEELGLVSHAHLGHGAPTY 80 (145)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHHTTC---TTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHHhhC---CCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 3444444444899999998776432 246889999999999999999987644344444
No 194
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.18 E-value=47 Score=27.68 Aligned_cols=60 Identities=5% Similarity=0.133 Sum_probs=43.5
Q ss_pred hHHHHHhhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 493 DAALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 493 ~A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
.-+|..++... +-++.++|...+.+.. -..+...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 81 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVF 81 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 34566666554 5799999999887642 246888999999999999999987643333333
No 195
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=40.02 E-value=67 Score=29.38 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=41.0
Q ss_pred cHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 392 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 392 s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..|..|+-.....+.+|..+++..+|.+....+..|..+. +-+++...
T Consensus 153 ~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 153 EEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp GGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 45888888777777899999999999999999999999886 34777654
No 196
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=39.95 E-value=51 Score=32.04 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhc
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 433 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~ 433 (557)
.+..||.+.++...+|.++|++.+|++...+.+.|..|..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4556777778878899999999999999999999999964
No 197
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=39.67 E-value=70 Score=33.60 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=71.5
Q ss_pred CcCHHHHHHHh----CCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCCCCcceeeecCCCchhhhhhHH
Q 008709 407 RLSYSEIMTQL----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVE 482 (557)
Q Consensus 407 ~~t~~el~~~~----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~e~~~~~~ 482 (557)
.+|+.+|.+.+ +++.+.+..+|.-|+....+++.+.+++ .++.|.||.. .-... -....-+
T Consensus 287 ~is~~~I~~~l~~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~----g~g~y~V~~~--~~~~~---------lr~~~ie 351 (534)
T 2xub_A 287 PLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS----GGGMYVINLH--KALAS---------LATATLE 351 (534)
T ss_dssp CEEHHHHHHTSCTTCCCCHHHHHHHHHHHHSCTTCCEEECCCC----SSCEEEEBHH--HHHHH---------HHHHHHH
T ss_pred cccHHHHHHHcCCcccccHHHHHHHHHHHhCCcHHhhhccccC----CCceEEEeHH--HHHHH---------HHHHHHH
Confidence 56677776655 5677889999999886556777765432 3567777543 10000 0111223
Q ss_pred hHHHhhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 483 DVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 483 ~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
.+..+|--..=+-|+|+|..++.+.-++|-+.+. .+..++++.+-.|.+.||+.--
T Consensus 352 ~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a~--------i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 352 SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAM--------IPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp HHHHHHHCHHHHHHHHHHHHC---CHHHHHHHHC--------SCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHhC--------CCHHHHHHHHHHHHHCCCeEEE
Confidence 3444454444445999999988888887765432 3568899999999999998754
No 198
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=39.32 E-value=68 Score=24.89 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
-+.||..... + ++..+|+..+|+++..+.+.+..|. +.+++.+.
T Consensus 10 i~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3456666654 3 9999999999999999999999997 34777653
No 199
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=39.05 E-value=33 Score=28.48 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCCCcCHHHHHHHh-CCCHHHHHHHHHhhhcccceeeecC
Q 008709 393 TYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 393 ~~Qa~iLl~Fn~~~~~t~~el~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.....||.... .+.+++.||++.+ |++...+-++|..|. +.+++.+.
T Consensus 35 ~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 35 RWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp HHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 34445665544 4679999999999 799999999999997 45788754
No 200
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.78 E-value=35 Score=28.75 Aligned_cols=48 Identities=6% Similarity=0.033 Sum_probs=36.0
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+.....++..+|... +..+...+-+.|..|.++|||+|..
T Consensus 45 ~~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 45 TELYAFLYVALFGPKKMKEIAEF--------LSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHH--------TTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 35556666666667887777652 3457888999999999999999953
No 201
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=38.78 E-value=27 Score=28.64 Aligned_cols=46 Identities=4% Similarity=0.167 Sum_probs=32.0
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
+..|...+...+.++..+|.. .+..+.+.+-+.|..|.++|||+|.
T Consensus 35 ~~~iL~~l~~~~~~~~~ela~--------~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 35 QFGVIQVLAKSGKVSMSKLIE--------NMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHSCSEEHHHHHH--------HCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHH--------HHCCChhHHHHHHHHHHHCCCeeec
Confidence 444555555556666666654 2345667789999999999999984
No 202
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=38.70 E-value=23 Score=27.51 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=32.7
Q ss_pred hHHHHHhhcc--CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc
Q 008709 493 DAALVRIMKS--RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 545 (557)
Q Consensus 493 ~A~IVRimK~--~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 545 (557)
|..|.+++.. .+.+...+|-. +...+...+..+|..|.++|||+|
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~--------~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRY--------KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3445555555 44677777664 345677889999999999999994
No 203
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.30 E-value=61 Score=27.13 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=43.9
Q ss_pred hHHHHHhhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 493 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 493 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
.-+|.++|.. .+-++.++|...+.+.. -.++...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 3456666655 45799999999886542 346889999999999999999997643344444
No 204
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=38.09 E-value=27 Score=32.98 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=26.2
Q ss_pred cCCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 403 NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 403 n~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
.....+|+++|++.|||..+++..+|+.|
T Consensus 204 ~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 204 EHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred hcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 34568999999999999999999999988
No 205
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=37.49 E-value=50 Score=23.31 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=28.1
Q ss_pred EcHHHHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 391 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 391 ~s~~Qa~iLl~-Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
+|.-+-.|+.+ |-+ .+|..||++.+|++...+...+..-
T Consensus 16 L~~~~r~il~l~~~~--g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQLL--GLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHTS--CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555544 433 5899999999999999888776544
No 206
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=37.31 E-value=46 Score=25.39 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=27.4
Q ss_pred cHHHHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 392 STYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 392 s~~Qa~iLl~-Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
+.-|-.|+.+ |- ..+|+.||++.+|++...++..+..-
T Consensus 39 ~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 39 SAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4455555544 43 35899999999999999888776543
No 207
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=37.28 E-value=19 Score=28.29 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=32.8
Q ss_pred hhcCCCCc-CHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 401 LFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 401 ~Fn~~~~~-t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+..++.+ |..+|++.+|++...+.++|..|. ..+++...
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~--~~Gli~~~ 68 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK--SEGLVSSR 68 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT--TSSCCEEE
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 34455677 999999999999999999999996 35777654
No 208
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=37.24 E-value=88 Score=23.18 Aligned_cols=57 Identities=5% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHhhhhHhhhhccccCh-hHHHHHHHHHHHHHhcCCCC
Q 008709 205 ELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDRS 265 (557)
Q Consensus 205 e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l~~K-d~F~~~Y~~~L~~RLL~~~~ 265 (557)
++++++++.++.++ .+++++...++.+-..+..+... +.|...|-..+.+-|+.+.+
T Consensus 8 ~~iv~~ve~~l~~~----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 8 RKIIQKLEDMVGPQ----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcC----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 67888889988753 47899999999998888775554 78999999999998887754
No 209
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=37.22 E-value=41 Score=27.79 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=34.1
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.... ++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344556666666 8888887643 357788999999999999999865
No 210
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=37.21 E-value=22 Score=26.67 Aligned_cols=36 Identities=8% Similarity=0.252 Sum_probs=30.5
Q ss_pred HHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 397 ATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 397 ~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
.||-.+.+ ...++..+|++.+|++..+|.++|..|-
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46655554 4689999999999999999999999995
No 211
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=36.90 E-value=26 Score=29.18 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=38.2
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
++..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|..
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 355677888777788888887644 357888999999999999998753
No 212
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=36.24 E-value=1.2e+02 Score=27.62 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=37.9
Q ss_pred HHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 496 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 496 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
|..++...+.++..+|-. .|..+....+..|+.++.+|.+=||+...+.|=|
T Consensus 159 il~~~~~~g~vt~~~la~--------~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~ 210 (218)
T 3cuq_B 159 ALETVSEKGSLTSEEFAK--------LVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFY 210 (218)
T ss_dssp HHHHHHHTSCBCHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEE
T ss_pred HHHHHHHCCCcCHHHHHH--------HhCCCHHHHHHHHHHHHHcCCEEEECCCCceEEe
Confidence 334444567777777664 3567888899999999999999999765555434
No 213
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.02 E-value=58 Score=27.44 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=47.3
Q ss_pred EEEcHHHHHHHHhhcC-CCCcCHHHHHHHh-----CCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 008709 389 LIVSTYQAATLLLFNT-SDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 458 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~-~~~~t~~el~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 458 (557)
+.+|..-..||..+.+ ...+|.+||.+.+ +++...+-++|..|.. .+++.+...+. ....|.++.
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~~~~~---~~~~Y~~~~ 88 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE--SGLVKELTYGD---ASSRFDFVT 88 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH--TTSEEEECCTT---SCCEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH--CCCEEEEeeCC---CceEEECCC
Confidence 4566777788877654 4579999999999 8999999999999974 57887643211 234576653
No 214
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.70 E-value=37 Score=29.18 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=32.1
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
+..|...+.....++..+|-.. ...+...+-+.|..|.++|||+|.
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~--------l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATL--------LGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------hCCCHHHHHHHHHHHHHCCCEEec
Confidence 4445555555555666555542 345778899999999999999994
No 215
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=35.19 E-value=20 Score=29.42 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=30.0
Q ss_pred HHHHHhhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 494 AALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 494 A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
..|...+... ..++..+|.. .+..+.+.+-..|..|.++|||+|.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~--------~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIIN--------HLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHH--------HSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHhccCCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3344444334 4455555543 3445778899999999999999994
No 216
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.99 E-value=49 Score=28.17 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=44.1
Q ss_pred hHHHHHhhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 493 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 493 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
..+|..++.. .+-++.++|...+.+.. -.++...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 89 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKD---KNTSISSVYRILNFLEKENFISVLETSKSGRRY 89 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 3455555554 45799999999887653 246888999999999999999987644344444
No 217
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=34.98 E-value=37 Score=27.74 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=35.5
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 45566666666778877776533 357788999999999999999954
No 218
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.96 E-value=46 Score=28.10 Aligned_cols=60 Identities=3% Similarity=0.026 Sum_probs=43.2
Q ss_pred hHHHHHhhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 493 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 493 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
.-+|..++.. .+-++.++|...+.+.. -..+...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKF---PNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGC---TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 3455566654 56799999998775431 245888999999999999999997654444444
No 219
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=34.79 E-value=41 Score=29.50 Aligned_cols=56 Identities=4% Similarity=0.162 Sum_probs=46.4
Q ss_pred hHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 491 AIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 491 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.++-+|..++.. +.++--+|...+.......+.++...|-..+..|.+.|+|++..
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 456677788875 78999999998876665556789999999999999999999864
No 220
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=34.46 E-value=52 Score=27.02 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=33.5
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.....++..+|...+ ..+.+.+-..|..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l--------~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELI--------KVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCcCcCHHHHHHHH--------CCCHhHHHHHHHHHHHCCCEEeec
Confidence 34455555555667766666532 357788999999999999999954
No 221
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=34.39 E-value=36 Score=28.72 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=38.2
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
++-.|.+.+.....++..+|-.. +..+...+.++|..|.++|+|+|-
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~--------lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADI--------LNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHH--------TTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34568888888888999888752 446888899999999999999863
No 222
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=34.29 E-value=30 Score=32.79 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=22.5
Q ss_pred CCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 404 TSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 404 ~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
..+.+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3458999999999999999999999988
No 223
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=34.26 E-value=42 Score=27.46 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=33.9
Q ss_pred hHHHHHhhccCC--CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRK--VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.... .++..+|... +..+...+-+.|..|.++|||+|..
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESE--------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHH--------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 444555555555 6777777653 2357788999999999999999864
No 224
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=34.17 E-value=69 Score=24.53 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=39.5
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 553 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 553 (557)
...|++.+.. +.++..+|...+ ..+...+-+.+..|.+.|+|++..+.+..|
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVY 76 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 4467777776 788888877644 346788999999999999999886554444
No 225
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=33.98 E-value=74 Score=22.01 Aligned_cols=54 Identities=13% Similarity=0.289 Sum_probs=37.8
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 495 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 495 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
.|..+++..+.++.++|...+.+. ....+...|-+-|+ +-|.+ +-..+.+.+.|
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~---~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQD---GYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHT---TCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHh---CCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 344556777899999999988653 24578888998888 55778 54433456666
No 226
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=33.93 E-value=67 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=34.0
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+. .+.++..+|... +..+.+.+-..|..|.++|||+|..
T Consensus 39 ~~~iL~~l~-~~~~~~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 39 DFLVLRATS-DGPKTMAYLANR--------YFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHh-cCCcCHHHHHHH--------hCCCchhHHHHHHHHHHCCCEEeec
Confidence 445555555 667777766642 3467788999999999999999864
No 227
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=33.47 E-value=64 Score=25.42 Aligned_cols=54 Identities=11% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 008709 494 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 555 (557)
Q Consensus 494 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 555 (557)
..|.+.+. .+.++..+|...+. ..+...+-+.|..|.++|+|+|.. .|+....|
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~-------~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMP-------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCT-------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhc-------CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 34555565 57788888875320 467888999999999999999864 34444333
No 228
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=33.23 E-value=39 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=38.7
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI--------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 456788888888889998887643 35788899999999999999983
No 229
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=33.22 E-value=55 Score=26.86 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=35.4
Q ss_pred hHHHHHhh-ccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIM-KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+ .....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecC
Confidence 45555666 666778877776532 357788999999999999999964
No 230
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=32.85 E-value=39 Score=27.60 Aligned_cols=46 Identities=13% Similarity=0.303 Sum_probs=32.8
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
+..|...+.....++..+|.. . ...+.+.+-+.|..|.++|||+|.
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~----~----l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKK----V----LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHH----H----HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHH----H----HCCChHHHHHHHHHHHHCCCEEec
Confidence 444555555556677666653 2 345778899999999999999995
No 231
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=32.84 E-value=49 Score=27.71 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=37.5
Q ss_pred hHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 491 AIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 491 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.-+..|...+.....++..+|-.. ...+...+-..|..|.++|||+|..
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~--------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKL--------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 345667777777777887777652 3467888999999999999999864
No 232
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=32.76 E-value=22 Score=29.45 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=36.2
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+...+.++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERV--------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH--------CCChhhHHHHHHHHHHCCCeEecC
Confidence 455666666666777777776532 357788999999999999999865
No 233
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.60 E-value=52 Score=27.75 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=35.2
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+.....++..+|... +..+...+-+.|..|.++|||+|..
T Consensus 53 ~~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 53 AKMRALAILSAKDGLPIGTLGIF--------AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HCCChhHHHHHHHHHHHCCCEEecC
Confidence 34556666666667777776643 2457788999999999999999954
No 234
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=32.55 E-value=33 Score=28.82 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=37.8
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKI--------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 345678888878889988887643 35788899999999999999873
No 235
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=32.51 E-value=47 Score=30.15 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 397 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|+.+-.+++.++..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~ 53 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKD 53 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEe
Confidence 344444566789999999999999999999999997 44777654
No 236
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.05 E-value=50 Score=27.48 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=46.5
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEc
Q 008709 389 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN 457 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~--~~~t~~el~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N 457 (557)
+.+|..-..||..+.+. ..+|.+||.+.+ +++...+-++|..|.. .+++.+...+ .....|.++
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~~~~---~~~~~Y~~~ 84 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA--AGLVVRHNFD---GGHAVFELA 84 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEECSS---SSSCEEEES
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH--CCcEEEEEeC---CCceEEEeC
Confidence 45667777888777543 579999999998 8999999999999974 5788754221 122457664
No 237
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=31.64 E-value=33 Score=29.18 Aligned_cols=49 Identities=12% Similarity=0.265 Sum_probs=36.8
Q ss_pred hHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 491 AIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 491 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.-+..|...+.....++..+|-..+ ..+...+-..|..|.++|||+|..
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERS--------FIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH--------TSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCcCeEecC
Confidence 3455677777777788887776533 346677899999999999999864
No 238
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=31.63 E-value=38 Score=28.34 Aligned_cols=48 Identities=4% Similarity=0.101 Sum_probs=33.6
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRH--------LDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 34555556655666766666543 3457788999999999999999964
No 239
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=31.29 E-value=37 Score=26.86 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=36.2
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 548 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 548 (557)
....|.+.+ ..+.++..+|.. .+..+...+-+.|..|.+.|+|++..+
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~--------~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLAT--------RLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHH--------HSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHH-HcCCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 345566666 456688777765 245688889999999999999998754
No 240
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=31.10 E-value=40 Score=27.84 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=33.5
Q ss_pred hHHHHHhhc-cCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMK-SRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK-~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..+..++- ..+.++..+|...+ ..+.+.+-..+..|.++|||+|..
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 334444442 34678887777633 347788999999999999999973
No 241
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=30.96 E-value=32 Score=28.15 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHhhhhhccccccC
Q 008709 522 MFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 522 ~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.+..+.+.+-+.|..|.++|||+|..
T Consensus 61 ~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 61 LTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 35567888999999999999999963
No 242
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=30.77 E-value=66 Score=24.43 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=37.6
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPN 551 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 551 (557)
+-..|..+++... ++..+|-. .+..+...|.++|..|.+.|+|.+.+..|-
T Consensus 18 ~~~~IL~lL~~~g-~sa~eLAk--------~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 18 IVCEAIKTIGIEG-ATAAQLTR--------QLNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHHHHHSSST-EEHHHHHH--------HSSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHHHHHcC-CCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 3445667788655 66555543 456788999999999999999999876543
No 243
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.77 E-value=77 Score=27.32 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=41.2
Q ss_pred hHHHHHhhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.-+|.+++.. .+-++.++|...+.+... ....+...|=+.|+.|.+.|.|.+-.
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~-~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEP-DLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCG-GGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3456666655 467999999998876510 12468889999999999999999974
No 244
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=30.76 E-value=51 Score=27.82 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=35.2
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+.....++..+|-..+ ..+...+-+.|..|.++|||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRT--------AMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeec
Confidence 355566666667778877776532 357788999999999999999954
No 245
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=30.75 E-value=35 Score=28.28 Aligned_cols=48 Identities=6% Similarity=0.071 Sum_probs=35.7
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEK--------WSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeecc
Confidence 35556666666667777777643 2357788999999999999999954
No 246
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=30.68 E-value=61 Score=26.80 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=30.6
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 495 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 495 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.|...+...+.++..+|-. .+..+.+.+-..|..|.++|||+|..
T Consensus 46 ~iL~~l~~~~~~t~~ela~--------~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSN--------KMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHH--------HHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3444444444555555553 23467788999999999999999953
No 247
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=30.65 E-value=35 Score=29.26 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=37.3
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSERV--------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeee
Confidence 44677888888889988887643 35788899999999999999973
No 248
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=30.60 E-value=82 Score=25.13 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.9
Q ss_pred hcCCCCc-CHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 402 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 402 Fn~~~~~-t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..++.+ |..+|++.+|++...+.++|..|.. -++|...
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~--~Gli~~~ 66 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKAYQSLLD--DNVIEKR 66 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 4445667 9999999999999999999999974 4677654
No 249
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=30.44 E-value=57 Score=27.51 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=38.2
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 545 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 545 (557)
++..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcce
Confidence 355688888888889999888644 3578889999999999999997
No 250
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.31 E-value=46 Score=28.30 Aligned_cols=60 Identities=3% Similarity=0.118 Sum_probs=43.7
Q ss_pred hHHHHHhhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 493 DAALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 493 ~A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
..+|..++... +-++.++|...+.+.. -..+...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 80 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLG---EEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVF 80 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 34566666554 5799999999887642 246888999999999999999987543334444
No 251
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=30.29 E-value=1e+02 Score=22.77 Aligned_cols=56 Identities=9% Similarity=0.151 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCCCCCCChHHHHHhhhhHhhhhcc-ccCh-hHHHHHHHHHHHHHhcCCCC
Q 008709 205 ELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAY-ISDK-DLFAEFYRKKLARRLLFDRS 265 (557)
Q Consensus 205 e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~-l~~K-d~F~~~Y~~~L~~RLL~~~~ 265 (557)
+++.+.++.++ ++ .+++++...++.+...+.. +.+. +.|+..|-..+..-|+.+.+
T Consensus 8 ~~~v~~le~~l-~n----~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 8 LTIVQKLKKMV-DK----PTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHC-SS----CCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHh-cc----cCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56677778877 53 3788999999998888876 6655 78999999999999988754
No 252
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=30.17 E-value=47 Score=27.36 Aligned_cols=46 Identities=9% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 494 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 494 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
..|...+...+.++..+|-.. ...+.+.+-+.|..|.++|||+|..
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALW--------TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 334444444456666665542 3457788999999999999999864
No 253
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=30.08 E-value=45 Score=31.58 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=24.1
Q ss_pred CcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 407 RLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 407 ~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
.+|++||++.|||..+++..+|+.|
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l 236 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYL 236 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 7999999999999999999999988
No 254
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=30.08 E-value=30 Score=27.40 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=34.1
Q ss_pred HHHhhcCCCCc-CHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 398 TLLLFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 398 iLl~Fn~~~~~-t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
|+-.+..++.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~--~GlI~~~ 76 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLES--AGVIESR 76 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 33455555667 9999999999999999999999974 4677654
No 255
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.03 E-value=84 Score=25.84 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=42.0
Q ss_pred HHHHhhc-cCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 495 ALVRIMK-SRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 495 ~IVRimK-~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
+|..++. +.+-++.++|...+.+.. -..+...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRG---ENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 3444443 455799999999887642 246888999999999999999987654344444
No 256
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=29.90 E-value=31 Score=28.44 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=33.8
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 548 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 548 (557)
+..|...+.....++..+|... +..+.+.+-+.|..|.++|||+|..+
T Consensus 39 ~~~iL~~l~~~~~~~~~ela~~--------l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 39 QFLVLTILWDESPVNVKKVVTE--------LALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHH--------TTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHH--------HCCChhhHHHHHHHHHHCCCEEeecC
Confidence 4556666665666666666542 33466678999999999999999653
No 257
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=29.88 E-value=29 Score=28.73 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=33.1
Q ss_pred hHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 008709 491 AIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 548 (557)
Q Consensus 491 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 548 (557)
.-+..|...+-....++..+|-..+ ..+.+.+-..|..|.++|||+|..+
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQM--------CRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHH--------C---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 3455666666666778777776533 3456678899999999999999653
No 258
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=29.79 E-value=1.4e+02 Score=23.99 Aligned_cols=58 Identities=5% Similarity=0.047 Sum_probs=48.7
Q ss_pred hhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 487 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 487 ~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-++-.++.+|..++.. +.++--+|...+.+. +.+.++...+=..|..|-+.|+|++..
T Consensus 7 l~~g~l~~~IL~lL~~-~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~~ 64 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR-RETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIEK 64 (117)
T ss_dssp HHHHHHHHHHHHHHHH-SCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHChHHHHHHHHHHc-CCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 4557789999999874 788999999998764 455789999999999999999999863
No 259
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=29.65 E-value=61 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=39.3
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCC--CCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMF--KPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F--~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
++-.|...++..+.++..+|-. .+ ..+...|.++|..|.+.|+|++..
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~--------~l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELED--------RDEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHT--------STTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHcCCCCHHHHHH--------HHhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4566778888878888887764 45 678999999999999999999864
No 260
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=29.35 E-value=57 Score=29.00 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=37.2
Q ss_pred EcHHHHHHHHhhc----C-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFN----T-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn----~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|.-|..||.... + +...|+.||++.+|++...+.++|..|. +.+.+.+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le--~~G~i~~~ 57 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE--KKGYIERK 57 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH--HCCCEEec
Confidence 3556777765543 2 2368999999999999999999999996 34666654
No 261
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=29.33 E-value=70 Score=29.28 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
...+|.++-++..+++++|+..+|++.+.+...|..+-
T Consensus 24 ~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 24 LVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 34566677788899999999999999999999999884
No 262
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=29.15 E-value=51 Score=29.13 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=31.8
Q ss_pred HHHHHHhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhc
Q 008709 395 QAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSC 433 (557)
Q Consensus 395 Qa~iLl~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~ 433 (557)
+..||.++.+ ...+|..+|++.+|++...+.+.|..|..
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456666653 45699999999999999999999999964
No 263
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=28.97 E-value=39 Score=29.46 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=38.3
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQL--------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 445688888888889998887643 35788899999999999999873
No 264
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=28.95 E-value=47 Score=28.06 Aligned_cols=39 Identities=8% Similarity=0.217 Sum_probs=31.3
Q ss_pred hcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 402 FNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 402 Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
...++.+|..+|++.+|++...+.++|..|.. .+++.+.
T Consensus 49 l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~--~Glv~r~ 87 (155)
T 2h09_A 49 IREVGEARQVDMAARLGVSQPTVAKMLKRLAT--MGLIEMI 87 (155)
T ss_dssp HHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 33345689999999999999999999999974 3676543
No 265
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=28.85 E-value=48 Score=29.52 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=39.0
Q ss_pred hhHHhHhHHHHHhhccCC-CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCC
Q 008709 487 DRRYAIDAALVRIMKSRK-VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENP 550 (557)
Q Consensus 487 ~r~~~i~A~IVRimK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~ 550 (557)
.|+..|=.+|...++.++ ..+..||-..+ ..+...+.++|..|-++|||+|+...+
T Consensus 5 ~~q~~il~~I~~~~~~~g~~~s~~eia~~l--------gl~~~tv~~~l~~Le~~G~i~~~~~~~ 61 (196)
T 3k2z_A 5 ERQRKVLLFIEEFIEKNGYPPSVREIARRF--------RITPRGALLHLIALEKKGYIERKNGKP 61 (196)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEECC---T
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHc--------CCCcHHHHHHHHHHHHCCCEEecCCCc
Confidence 355666677777777655 68888887533 233446999999999999999987543
No 266
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.85 E-value=41 Score=29.33 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=38.8
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEee
Confidence 455788888888889999988644 35788899999999999999873
No 267
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=28.75 E-value=35 Score=32.35 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=21.4
Q ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 405 SDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 405 ~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
.+.+|++||++.|||..+++..+|+.|
T Consensus 206 ~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 206 RGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp -----CHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 358999999999999999999999988
No 268
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.71 E-value=63 Score=26.62 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=39.5
Q ss_pred EcHHHHHHHHhhc-CCCCcCHHHHHHHh-----CCCHHHHHHHHHhhhcccceeeecC
Q 008709 391 VSTYQAATLLLFN-TSDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn-~~~~~t~~el~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+|..-..||..+. ....+|.+||.+.+ +++...+-++|+.|.. .+++.+.
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e--~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS--SGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCEEEE
Confidence 4555667776664 44589999999999 8999999999999974 5787654
No 269
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=28.47 E-value=61 Score=26.15 Aligned_cols=55 Identities=7% Similarity=0.076 Sum_probs=46.3
Q ss_pred HHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 489 RYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 489 ~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
+-.++.+|..++. .+.++--+|...+.+ .+.+.++...+=..|..|-+.|+|++.
T Consensus 7 ~g~l~~~IL~~L~-~~~~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~ 61 (115)
T 4esb_A 7 KGVLEGCILYIIS-QEEVYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGT 61 (115)
T ss_dssp TTTHHHHHHHHHH-HSCEEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCHHHHHHHHHHH-cCCCCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEE
Confidence 3567888888887 577888899998876 455688999999999999999999985
No 270
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=28.40 E-value=31 Score=27.32 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=38.8
Q ss_pred hHHHHHhhccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC-CCCceE
Q 008709 493 DAALVRIMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE-NPNMFR 554 (557)
Q Consensus 493 ~A~IVRimK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~-~~~~y~ 554 (557)
...|+..++....+ +..+|.. .|..+...|.++|..|.+.|+|++... ..++|+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~--------~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIAD--------RVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 45555666655555 6666553 467899999999999999999998762 245554
No 271
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=28.37 E-value=91 Score=25.67 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=32.0
Q ss_pred hcCCCCc-CHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 402 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 402 Fn~~~~~-t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
|..++.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~--~Gli~~~ 61 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLVE--AGILYKK 61 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHT--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEe
Confidence 4455677 9999999999999999999999974 4677654
No 272
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.94 E-value=57 Score=27.28 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=28.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHh
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 430 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~ 430 (557)
+|.-|-.|+..+- .++|..||++.+|++...+...+..
T Consensus 110 L~~~~r~v~~~~~--~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 110 FSKFEKEVLTYLI--RGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp SCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3555666666433 4689999999999999988776654
No 273
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=27.94 E-value=43 Score=28.25 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=38.0
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
++..|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|.
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 455778888877889998887644 35778899999999999999864
No 274
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=27.93 E-value=1.1e+02 Score=26.19 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=46.2
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 556 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 556 (557)
.+.|.+++++++..+.+||.....++ -|..+...|-+-|..| |.++....+ +.|.|.
T Consensus 7 ~~~I~~li~~~~~~tq~eL~~~L~~~---G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~ 63 (149)
T 1b4a_A 7 HIKIREIIMSNDIETQDELVDRLREA---GFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYS 63 (149)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHT---TCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEE
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHc---CCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEE
Confidence 67899999999999999999988765 4889988898887766 667665443 778885
No 275
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=27.64 E-value=81 Score=25.37 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=44.0
Q ss_pred HhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCC--CCh-HHHHHHHHhhhhhccccccC
Q 008709 490 YAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFK--PDI-KAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 490 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~--~~~-~~ik~~Ie~Liereyi~r~~ 547 (557)
..++.+|..++.. +.++-.+|...+.+ .+.+. ++. ..+-..|..|.+.|||++..
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~--~g~~~~~is~~~tly~~L~~Le~~GlI~~~~ 69 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAE--FGIEIPGIGHMGNIYRVLADLEESGFLSTEW 69 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHT--TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHH--hCCcccCCCCcchHHHHHHHHHHCCCeEEEe
Confidence 4577888888854 78999999988865 23334 788 89999999999999999864
No 276
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=27.53 E-value=29 Score=29.44 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=35.0
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+...+.++..+|-.. +..+.+.+-+.|..|.++|||+|..
T Consensus 51 ~q~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 51 GQFPFLMRLYREDGINQESLSDY--------LKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp TTHHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 34556666666666777766542 3457788999999999999999864
No 277
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=27.42 E-value=73 Score=26.39 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=33.5
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~--------l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAA--------LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 4455555555556666666543 3457788999999999999999964
No 278
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.41 E-value=64 Score=27.36 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=40.6
Q ss_pred EEEcHHHHHHHHhhcC-CCCcCHHHHHHHh-----CCCHHHHHHHHHhhhcccceeeecC
Q 008709 389 LIVSTYQAATLLLFNT-SDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~-~~~~t~~el~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+.+|..-..||..+.+ ...+|.+||.+.+ +++...+-++|..|.. .+++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK--ENFISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCcEEEE
Confidence 4567777788877654 4689999999998 8999999999999974 5777654
No 279
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=27.41 E-value=46 Score=28.08 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=37.6
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 44677888888889999887643 35788899999999999999873
No 280
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=27.36 E-value=68 Score=25.23 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=37.2
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHhccCCC-CChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 008709 495 ALVRIMKSRKVLGHQQLVSECVEQLSRMFK-PDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 555 (557)
Q Consensus 495 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~-~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 555 (557)
.|.+.+. .+.++..+|... .. .+...+-..|..|.++|+|+|.. .|+....|
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~--------l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRA--------IPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHH--------STTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHH-hCCcCHHHHHHH--------cccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 4556665 567888887752 33 68888999999999999999864 34443333
No 281
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=27.12 E-value=35 Score=26.16 Aligned_cols=48 Identities=8% Similarity=0.115 Sum_probs=35.0
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.+-.|...+...+.++..+|-.. +..+.+.+-..|..|.+.|+|++..
T Consensus 17 ~~~~iL~~L~~~~~~~~~ela~~--------l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKAPFSQIQKV--------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 34556666655567777777653 3467888999999999999999743
No 282
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=26.67 E-value=38 Score=28.36 Aligned_cols=47 Identities=6% Similarity=0.099 Sum_probs=32.5
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.....++..+|... +..+...+-+.|..|.++|||+|..
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGER--------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3444445544555665555542 3367888999999999999999964
No 283
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=26.65 E-value=82 Score=25.79 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=32.1
Q ss_pred hcCCCCc-CHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 402 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 402 Fn~~~~~-t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..++.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 29 ~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~--~Gli~~~ 68 (126)
T 3by6_A 29 LSANDQLPSVRETALQEKINPNTVAKAYKELEA--QKVIRTI 68 (126)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 4445677 9999999999999999999999974 4677654
No 284
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=26.51 E-value=76 Score=25.65 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=47.6
Q ss_pred hhHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 008709 487 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 546 (557)
Q Consensus 487 ~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 546 (557)
-++-.++.+|..++. .+.+.--+|...+.+ .+.+.++...+=..+..|-++|+|++.
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 345678899999997 467888899998876 455578999999999999999999986
No 285
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=26.51 E-value=72 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=36.1
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
.+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l--------~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERL--------QIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEecC
Confidence 345566666666678877776532 357788999999999999999875
No 286
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=26.50 E-value=45 Score=27.65 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=34.2
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l--------~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 42 EWRIISVLSSASDCSVQKISDIL--------GLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 44555666666778877776532 357788999999999999999874
No 287
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=26.46 E-value=74 Score=31.27 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=32.5
Q ss_pred HhhcC-CCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 400 LLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 400 l~Fn~-~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
....+ .+.+|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~ 82 (363)
T 3dp7_A 42 QLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILL 82 (363)
T ss_dssp HHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred HHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEe
Confidence 33344 46899999999999999999999999975 478865
No 288
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=26.42 E-value=58 Score=27.46 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 008709 495 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 555 (557)
Q Consensus 495 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 555 (557)
.|++.+. .+.++..+|...+ ..+...+-++|..|.+.|+|+|.. .|+ ...|
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~l--------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSL--------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 4556664 5678888887643 357788999999999999999965 355 5544
No 289
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=26.39 E-value=1.1e+02 Score=29.83 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=31.2
Q ss_pred HHHHhh--cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhc
Q 008709 397 ATLLLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 433 (557)
Q Consensus 397 ~iLl~F--n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~ 433 (557)
.||.++ ++...+|-++|++.+|++...+.++++.|..
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~ 45 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKL 45 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555 5666899999999999999999999999964
No 290
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.37 E-value=15 Score=28.40 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=34.4
Q ss_pred HhhccCC-CCChhHHHHHHHHHhccCCCCChHH-HHHHHHhhhhhccccccCCCCCc
Q 008709 498 RIMKSRK-VLGHQQLVSECVEQLSRMFKPDIKA-IKKRMEDLITRDYLERDKENPNM 552 (557)
Q Consensus 498 RimK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~-ik~~Ie~Liereyi~r~~~~~~~ 552 (557)
..+.... .++..+|...+ ..+... +-+.|..|.++|||++++.|+..
T Consensus 22 ~~l~~~~~~~t~~eLa~~l--------~is~~t~vs~~l~~Le~~Glv~~~~~drR~ 70 (95)
T 2pg4_A 22 LEFEKKGYEPSLAEIVKAS--------GVSEKTFFMGLKDRLIRAGLVKEETLSYRV 70 (95)
T ss_dssp HHHHHTTCCCCHHHHHHHH--------CCCHHHHHTTHHHHHHHTTSEEEEEEETTE
T ss_pred HHHHhcCCCCCHHHHHHHH--------CCCchHHHHHHHHHHHHCCCeecCCCCCCe
Confidence 3444454 78888887533 357788 89999999999999987766543
No 291
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=26.36 E-value=88 Score=31.26 Aligned_cols=63 Identities=8% Similarity=0.086 Sum_probs=42.8
Q ss_pred HHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCC---CCCCCCeEEEccCC
Q 008709 396 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTK---TISQSDHFEFNSKF 460 (557)
Q Consensus 396 a~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~---~~~~~~~~~~N~~f 460 (557)
..||-+...+..+|..||++.||++...+.+.+..|.. .+++...+... .-.+...+.+|.++
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~--~g~i~~~~~~~~~~~GR~~~~l~~~~~~ 84 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLE--AHLVQELEIKEAGNRGRPAVGLVVETEA 84 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEC-------------CEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCcEEeecccCCCCCCCCCeEEEEcCCc
Confidence 45776676778899999999999999999999999974 46776542211 11234457777664
No 292
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=26.22 E-value=65 Score=20.81 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=23.3
Q ss_pred HHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHh
Q 008709 398 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 430 (557)
Q Consensus 398 iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~ 430 (557)
|+.++.+ .+|..+|++.+|++...+.+.+..
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3334444 389999999999999988776643
No 293
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=26.20 E-value=57 Score=22.84 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=30.0
Q ss_pred cCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeee
Q 008709 403 NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 440 (557)
Q Consensus 403 n~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~ 440 (557)
|.++-+.++.+++..|++.+++...|..|.. | +++.
T Consensus 21 ~sGGildI~~~a~kygV~kdeV~~~LrrLe~-K-GLI~ 56 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVEKQEVVKLLEALKN-K-GLIA 56 (59)
T ss_dssp HTTSEEEHHHHHHHHCCCHHHHHHHHHHHHH-T-TSEE
T ss_pred HcCCEEeHHHHHHHhCCCHHHHHHHHHHHHH-C-CCee
Confidence 5667799999999999999999999999974 2 4543
No 294
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=26.04 E-value=66 Score=29.87 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=40.2
Q ss_pred hHhHHHHHhhccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 491 AIDAALVRIMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 491 ~i~A~IVRimK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
.|...|.. ++....+ +..+|.. .|..+...|.++|..|.+.|+|.| .. .++|+
T Consensus 22 ~l~~~I~~-~~~g~~lPse~~La~--------~~~vSr~tvr~Al~~L~~~G~i~~-~g-~Gt~V 75 (248)
T 3f8m_A 22 ELDRMLDG-MRIGDPFPAEREIAE--------QFEVARETVRQALRELLIDGRVER-RG-RTTVV 75 (248)
T ss_dssp HHHHHHHH-CCTTCBCCCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE-ET-TEEEE
T ss_pred HHHHHHhC-CCCCCcCcCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEe-CC-CEEEE
Confidence 34455555 7776667 6666664 588999999999999999999999 63 56664
No 295
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=25.94 E-value=55 Score=25.98 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=44.1
Q ss_pred hHHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 488 RRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 488 r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
++-.++.+|..++.. +.++--+|...+.+ .+.++...+-..|..|.++|||++..
T Consensus 6 ~~g~l~~~IL~~L~~-~~~~gyel~~~l~~----~~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 6 SALLIEYLILAIVSK-HDSYGYDISQTIKL----IASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp CHHHHHHHHHHHHHH-SCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCcHHHHHHHHHH----HhCCCcChHHHHHHHHHHCCCeEEEe
Confidence 345678888888875 67777788876553 47789999999999999999999864
No 296
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=25.86 E-value=91 Score=24.97 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.4
Q ss_pred EcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 391 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 391 ~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
+|.-|-.|+.+.-- ..+|..||++.+|++...+...+...
T Consensus 26 L~~~~r~vl~l~~~-~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 26 LTNKQRNYLELFYL-EDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp SCHHHHHHHHHHHT-SCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555556644321 35899999999999999988777654
No 297
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=25.81 E-value=98 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=31.2
Q ss_pred cCCCCc-CHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 403 NTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 403 n~~~~~-t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
..++.+ |..+|++.+|++...+.++|..|.. -++|...
T Consensus 32 ~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~--~G~i~~~ 70 (125)
T 3neu_A 32 KGEDKLPSVREMGVKLAVNPNTVSRAYQELER--AGYIYAK 70 (125)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCeEEEe
Confidence 344567 7999999999999999999999974 4777654
No 298
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=25.77 E-value=44 Score=27.80 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=29.3
Q ss_pred hHHHHHhhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+... ..++..+|-. .+..+.+.+-..|..|.++|||+|..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~--------~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQ--------FFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHH--------C------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHHhCCCCCCCHHHHHH--------HHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 44555555544 5677776664 23456667889999999999999974
No 299
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=25.62 E-value=49 Score=31.59 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=48.1
Q ss_pred HHhhHHhHhHHHHHhhccCC-CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC---CCCCceE
Q 008709 485 DKDRRYAIDAALVRIMKSRK-VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK---ENPNMFR 554 (557)
Q Consensus 485 ~~~r~~~i~A~IVRimK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~---~~~~~y~ 554 (557)
...+....-+.+.++|+.+. ..+..||.+.- .|.+=.-++-.-++.|++|++|++.. .++++|+
T Consensus 216 I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~p------~~~~~~idle~iL~~Lv~k~lI~~~~~~tk~~~~~~ 283 (290)
T 3c18_A 216 LQSKVLSGGKYLFEVMRERDRPWTMHELMEES------RLTELKVDLGSLVDFFIRKGLIRISYQRTKGLGVEL 283 (290)
T ss_dssp HHHTHHHHHHHHHHHHTTSSSCEEHHHHHHCG------GGGGGHHHHHHHHHHHHHTTSEEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHhcCc------ccccccCCHHHHHHHHHHcCCeEEecccCCCCcEEE
Confidence 34455666788999999988 79999998632 25555566778899999999999863 4556654
No 300
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=25.48 E-value=99 Score=29.75 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+.+|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~ 71 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRD 71 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEec
Confidence 5899999999999999999999999975 5788754
No 301
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.42 E-value=59 Score=27.64 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=41.9
Q ss_pred EEEcHHHHHHHHhhcCC--CCcCHHHHHHHh-----CCCHHHHHHHHHhhhcccceeeecC
Q 008709 389 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~--~~~t~~el~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+.+|..-..||..+.+. ..+|.+||.+.+ +++...+-++|..|.. .+++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDD--AGIVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--CCcEEEE
Confidence 45677778888777553 579999999998 8999999999999974 5777654
No 302
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=25.32 E-value=85 Score=30.20 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+..|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~--~g~l~~~ 74 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVA--FEIFQGD 74 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCceEec
Confidence 5799999999999999999999999974 5788753
No 303
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=25.04 E-value=64 Score=31.51 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=30.1
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
+..|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 51 ~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~~~~ 84 (360)
T 1tw3_A 51 GARTVKALAARTDTRPEALLRLIRHLVA--IGLLEE 84 (360)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEe
Confidence 5799999999999999999999999974 578865
No 304
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=24.84 E-value=97 Score=30.25 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 458 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 458 (557)
+..|++||++.+|+++..+.+.|..|+. .+++... ++.|..+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~--------~~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQ--MRVINLE--------DGKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHh--CCCeEee--------CCeEecCH
Confidence 6799999999999999999999999974 5788753 34676653
No 305
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=24.82 E-value=65 Score=26.53 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=34.7
Q ss_pred hHHHHHhhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.. .+.++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~--------l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAA--------ERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------hCCChhhHHHHHHHHHHCCCEeeCC
Confidence 3445555555 667777777652 3468888999999999999999974
No 306
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.74 E-value=63 Score=30.09 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=33.0
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
.+|.-|-.|+.++ ..++|.+||++.+|++...++.++....
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567777777776 3679999999999999999998887653
No 307
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.58 E-value=31 Score=28.33 Aligned_cols=32 Identities=9% Similarity=0.218 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 522 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 522 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
.|..+...|.+++..|...|+|++.+. .++|+
T Consensus 46 ~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 77 (125)
T 3neu_A 46 KLAVNPNTVSRAYQELERAGYIYAKRG-MGSFV 77 (125)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCeEEEecC-CEEEE
Confidence 477889999999999999999999864 45543
No 308
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.34 E-value=32 Score=27.65 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 008709 522 MFKPDIKAIKKRMEDLITRDYLERDKENPNMF 553 (557)
Q Consensus 522 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 553 (557)
.|..+...|.+++..|...|+|++.+. .++|
T Consensus 42 ~~~vSr~tvr~al~~L~~~Gli~~~~~-~G~~ 72 (113)
T 3tqn_A 42 EYQINPLTVSKAYQSLLDDNVIEKRRG-LGML 72 (113)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEecC-CeEE
Confidence 467889999999999999999998764 4544
No 309
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=24.24 E-value=32 Score=26.48 Aligned_cols=37 Identities=5% Similarity=-0.071 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCC
Q 008709 506 LGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPN 551 (557)
Q Consensus 506 l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 551 (557)
++..+|-. .+..+.+.+-+.|..|.++||| +++.|+.
T Consensus 31 ~t~~eLa~--------~l~i~~~tvs~~l~~Le~~Glv-~~~~d~R 67 (95)
T 2qvo_A 31 VYIQYIAS--------KVNSPHSYVWLIIKKFEEAKMV-ECELEGR 67 (95)
T ss_dssp EEHHHHHH--------HSSSCHHHHHHHHHHHHHTTSE-EEEEETT
T ss_pred cCHHHHHH--------HHCcCHHHHHHHHHHHHHCcCc-cCCCCCC
Confidence 66666554 3456778899999999999999 5554543
No 310
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=24.10 E-value=81 Score=28.78 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=35.5
Q ss_pred EEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 389 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 389 l~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
..+|.-|..||.++- .+.|..||++.+|++...++.++....
T Consensus 172 ~~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 172 AWLDPKEATYLRWIA--VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 347788888887764 468999999999999999999998775
No 311
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=23.76 E-value=43 Score=28.23 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=33.0
Q ss_pred HhHHHHHhh-ccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIM-KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+ .....++..+|... ...+...+-+.|..|.++|||+|..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~--------l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGA--------LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHH--------CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHH--------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 355566666 45556766666542 3345666889999999999999964
No 312
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=23.54 E-value=70 Score=29.35 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=35.2
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
.+|.-+..||.+.- .+.|..||++.+|+++..++.++..+.
T Consensus 175 ~Lt~re~~vl~~~~--~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 175 RLTARETEMLKWTA--VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46778888887775 458999999999999999999998875
No 313
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=23.48 E-value=40 Score=28.63 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=33.2
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+...+.++..+|-. .+..+...+-..|..|.++|||+|..
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~--------~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLAT--------LGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 444555555555566555543 34567888999999999999999865
No 314
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=23.43 E-value=40 Score=31.16 Aligned_cols=33 Identities=9% Similarity=0.340 Sum_probs=27.9
Q ss_pred cCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 521 RMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 521 ~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
..|..+...+.++|..|.+.|+|+|... .++|+
T Consensus 41 ~~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 73 (236)
T 3edp_A 41 EIYSSSRTTIRRAVDLLVEEGLVVRKNG-VGLYV 73 (236)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEECC-ceEEE
Confidence 3588999999999999999999999874 46554
No 315
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=23.40 E-value=1.1e+02 Score=23.25 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhc
Q 008709 395 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 433 (557)
Q Consensus 395 Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~ 433 (557)
+-.++....-...++++.|++.++++.+.+...|..|+.
T Consensus 18 E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~ 56 (84)
T 1ufm_A 18 EHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMIT 56 (84)
T ss_dssp HHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 334444445678999999999999999999999988864
No 316
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=23.27 E-value=77 Score=27.47 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=29.1
Q ss_pred HhhcCCCCcCHHHHHHHhC--CCHHHHHHHHHhhh
Q 008709 400 LLFNTSDRLSYSEIMTQLN--LTHDDLVRLLHSLS 432 (557)
Q Consensus 400 l~Fn~~~~~t~~el~~~~~--i~~~~l~~~L~~L~ 432 (557)
++|-..+++|+++|++.++ ++.+.+...|..|.
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 5566677899999999999 99999999998885
No 317
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.22 E-value=45 Score=27.29 Aligned_cols=48 Identities=6% Similarity=0.113 Sum_probs=34.3
Q ss_pred HhHHHHHhhccCC--CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRK--VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+-..+ .++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKA--------LQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3455555555554 6777776643 2357788999999999999999864
No 318
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=23.21 E-value=84 Score=30.17 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=30.1
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeec
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 441 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 441 (557)
+..|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~ 71 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTK 71 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEe
Confidence 6799999999999999999999999974 578864
No 319
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.15 E-value=86 Score=25.18 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=28.8
Q ss_pred EcHHHHHHHHh-hcCCCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 391 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 391 ~s~~Qa~iLl~-Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
+|+-|..++.+ +-+ ++|..||++.+|++...+...+..-
T Consensus 23 L~~~~r~vl~l~y~~--g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 23 LTDKQMNYIELYYAD--DYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp SCHHHHHHHHHHHHT--CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45556666644 333 4799999999999999988877654
No 320
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=22.59 E-value=47 Score=27.51 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 522 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 522 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
.|..+...|.+++..|...|+|++.+. .++|+
T Consensus 37 ~~gvSr~tVr~Al~~L~~~Gli~~~~g-~G~~V 68 (129)
T 2ek5_A 37 FHRINPATARNGLTLLVEAGILYKKRG-IGMFV 68 (129)
T ss_dssp HTTCCHHHHHHHHHHHHTTTSEEEETT-TEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCcEEEecC-CEEEE
Confidence 588899999999999999999998874 45543
No 321
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=22.15 E-value=65 Score=25.05 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=25.7
Q ss_pred HHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHh
Q 008709 397 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 430 (557)
Q Consensus 397 ~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~ 430 (557)
.|+...+... +|+.||++.+|++...+.+.|..
T Consensus 11 ~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 11 KIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 4454455444 89999999999999999988853
No 322
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=21.98 E-value=85 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.7
Q ss_pred CCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 406 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 406 ~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
+.+|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 48 ~~~t~~eLA~~~g~~~~~l~r~Lr~L~~--~Gll~~~ 82 (374)
T 1qzz_A 48 GADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEGG 82 (374)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEECC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCEEEe
Confidence 5799999999999999999999999974 5788753
No 323
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=21.97 E-value=68 Score=25.97 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=36.7
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 553 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 553 (557)
...|.+.+...+.++..+|-..+ ..+.+.+-+.|..|.+.|+|.+....+..|
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l--------~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 96 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANIL--------GVTIANASHHLRTLYKQGVVNFRKEGKLAL 96 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEECCEEE
Confidence 33577777766778888776533 347788999999999999999876544444
No 324
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=21.71 E-value=64 Score=25.42 Aligned_cols=54 Identities=13% Similarity=0.366 Sum_probs=37.1
Q ss_pred hHHHHHhhccCC-CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc----CCCCCceEe
Q 008709 493 DAALVRIMKSRK-VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD----KENPNMFRY 555 (557)
Q Consensus 493 ~A~IVRimK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~----~~~~~~y~Y 555 (557)
...|+..+...+ .++..+|.. .+..+...+.+.|..|.+.|+|.+. +. .+.|+|
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~--------~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~-~g~~v~ 78 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIAN--------QLNIKVNDVRKKLNLLEEQGFVSYRKTRDKD-SGWFIY 78 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHH--------TTTSCHHHHHHHHHHHHHHTSCEEEEEC----CCCCEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEecccCC-CceEEE
Confidence 345565553333 577766653 5778889999999999999999987 43 345554
No 325
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=21.64 E-value=2.3e+02 Score=20.31 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=37.3
Q ss_pred HHhHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCCh---HHHHHHHHhhhh
Q 008709 489 RYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDI---KAIKKRMEDLIT 539 (557)
Q Consensus 489 ~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~---~~ik~~Ie~Lie 539 (557)
+..+.++++-||.+.+.++...++..++..|. ...++ ......||-+..
T Consensus 7 ~e~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE--~~~d~~~~d~yR~lLe~v~~ 58 (64)
T 2oxl_A 7 SAVLGQAVTNLMLSGDNVNNKNIILSLIHSLE--TTSDILKADVIRKTLEIVLR 58 (64)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999997 34443 234455555544
No 326
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=21.41 E-value=52 Score=26.03 Aligned_cols=54 Identities=6% Similarity=0.168 Sum_probs=37.8
Q ss_pred hHhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 008709 491 AIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 553 (557)
Q Consensus 491 ~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 553 (557)
.....|++.+.. +.++..+|... +..+...+-+.|..|.+.|+|++..+.+..|
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~--------lgis~stvs~~L~~L~~~GlV~~~~~gr~~~ 78 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATA--------TGMNLTTASANLQALKSGGLVEARREGTRQY 78 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHH--------HTCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 344566677764 67777776653 3357788999999999999999876433333
No 327
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.37 E-value=39 Score=27.65 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=35.1
Q ss_pred HhHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 492 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 492 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
-+..|...+.....++..+|.. .+..+.+.+-+.|..|.++|||+|..
T Consensus 37 ~~~~iL~~l~~~~~~t~~ela~--------~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 37 QQWRVIRILRQQGEMESYQLAN--------QACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHH--------HHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 3455556665556677666654 24567888999999999999999964
No 328
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=21.33 E-value=1.3e+02 Score=22.09 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCC--CcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 395 QAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 395 Qa~iLl~Fn~~~--~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
-..++-..++.+ ..++++|+..+|++.+.+.++|.-+
T Consensus 34 a~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 34 ALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 344666677766 5789999999999999999988755
No 329
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.30 E-value=65 Score=26.38 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=35.4
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+...+.++..+|...+ ..+.+.+-..|..|.++|||+|..
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~l--------~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVLL--------GVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCchhHHHHHHHHHHCCCeeecC
Confidence 45555566556678887777533 357788999999999999999964
No 330
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=21.29 E-value=1.3e+02 Score=24.47 Aligned_cols=37 Identities=8% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 394 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 394 ~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
....++-+|.+ ++|+++||..-|++..++..+|..++
T Consensus 21 t~~~t~~l~~~--G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 21 MKVSIVQQIDR--KVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45567777876 57999999999999999999998875
No 331
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=21.29 E-value=1.2e+02 Score=23.10 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=34.4
Q ss_pred hHHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
...|.+.+ .+.++..+|...+ ..+...+.+.|..|.+.|+|++..
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~l--------~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQTL--------SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--cCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 34566666 4668888776533 457788999999999999999876
No 332
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=21.18 E-value=40 Score=28.00 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 516 VEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 516 ~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
..+|...|..+...|.+++..|...|+|++.+ ..++|+
T Consensus 41 er~La~~~gVSr~tVReAl~~L~~eGlv~~~~-g~G~~V 78 (134)
T 4ham_A 41 IREFASRIGVNPNTVSKAYQELERQEVIITVK-GKGTFI 78 (134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TTEEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc-CcEEEE
No 333
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=21.10 E-value=41 Score=27.72 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=34.3
Q ss_pred hhccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 499 IMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 499 imK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
.++....+ +..+|.. .|..+...|.+++..|...|+|++.+. .++|+
T Consensus 28 ~~~~G~~lPse~~La~--------~~~vSr~tvr~Al~~L~~~Gli~~~~g-~G~~V 75 (126)
T 3by6_A 28 VLSANDQLPSVRETAL--------QEKINPNTVAKAYKELEAQKVIRTIPG-KGTFI 75 (126)
T ss_dssp SSCTTCEECCHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred CCCCCCcCcCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEecC-CeEEE
Confidence 44544455 5555553 467899999999999999999998874 45553
No 334
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=21.01 E-value=1.4e+02 Score=23.08 Aligned_cols=27 Identities=0% Similarity=0.149 Sum_probs=23.3
Q ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHhh
Q 008709 405 SDRLSYSEIMTQLNLTHDDLVRLLHSL 431 (557)
Q Consensus 405 ~~~~t~~el~~~~~i~~~~l~~~L~~L 431 (557)
.+.+|+++|++.+|++...+.+.+...
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 456999999999999999998877655
No 335
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=20.73 E-value=59 Score=27.82 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=32.1
Q ss_pred hHHHHHhhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+.. ...++..+|... +..+...+-..|..|.++|||+|..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~--------l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKA--------IGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 4445555544 445666665542 3457788999999999999999965
No 336
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=20.71 E-value=81 Score=28.98 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=34.1
Q ss_pred hhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhhcccceeeecC
Q 008709 401 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 442 (557)
Q Consensus 401 ~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 442 (557)
.+..++.++..+|++.+|++...++++|..|.. .+++...
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~--~Glv~~~ 82 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLEA--QSLLRVE 82 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 456678899999999999999999999999974 4777655
No 337
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=20.64 E-value=45 Score=27.41 Aligned_cols=35 Identities=9% Similarity=0.234 Sum_probs=27.9
Q ss_pred hccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 008709 519 LSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 554 (557)
Q Consensus 519 l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 554 (557)
|...|..+...|.+++..|...|+|++.+. .++|+
T Consensus 41 La~~~~vSr~tvr~Al~~L~~~G~i~~~~~-~G~~V 75 (126)
T 3ic7_A 41 YASIVEVNANTVMRSYEYLQSQEVIYNKRG-IGFFV 75 (126)
T ss_dssp TTTCC-CCSGGGHHHHHHHHTTTSEEEETT-TEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEEcC-CccEE
Confidence 445788899999999999999999998874 45554
No 338
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.55 E-value=1.5e+02 Score=25.81 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=31.1
Q ss_pred hccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 008709 519 LSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 555 (557)
Q Consensus 519 l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 555 (557)
+...+..+....++.|+.++..|.+=||+...+ ..|
T Consensus 126 la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G-~~y 161 (169)
T 1u5t_B 126 NNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG-IYY 161 (169)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSC-EEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc-ceE
Confidence 778899999999999999999999999976555 444
No 339
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=20.47 E-value=98 Score=23.68 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=33.3
Q ss_pred HHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 008709 497 VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 548 (557)
Q Consensus 497 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 548 (557)
..+......++..+|-.. +..+...+-+.|..|.++|||+|...
T Consensus 28 ~~l~~~~~~~t~~ela~~--------l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADI--------FKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHHCSCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHcCCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 344444677888887753 34677889999999999999999753
No 340
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=20.39 E-value=69 Score=26.59 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.4
Q ss_pred hHHHHHhhc-cCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 008709 493 DAALVRIMK-SRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 547 (557)
Q Consensus 493 ~A~IVRimK-~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 547 (557)
+..|...+. ....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l--------~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATM--------GLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHH--------TCCHHHHHHHHHHHHTTTSEEC--
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHH--------CCCHhHHHHHHHHHHHCCCEEeeC
Confidence 445555554 33467877776533 357788999999999999999954
No 341
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.20 E-value=85 Score=28.64 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=34.5
Q ss_pred EEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHHhhh
Q 008709 390 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 432 (557)
Q Consensus 390 ~~s~~Qa~iLl~Fn~~~~~t~~el~~~~~i~~~~l~~~L~~L~ 432 (557)
.+|.-|..||.+.- .+.|..||++.+|++...++.++....
T Consensus 175 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 175 MLSPREMLCLVWAS--KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp SCCHHHHHHHHHHH--TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 36778888887764 468999999999999999999998775
No 342
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=20.06 E-value=1.5e+02 Score=24.53 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=39.1
Q ss_pred HHHHHhhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 008709 494 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 555 (557)
Q Consensus 494 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 555 (557)
..|++.+. .+.+.+.+|...+ . ..+...+-.+|..|.+.|+|+|.. .|+-...|
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l----~---gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y 84 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRIC----P---SITQRMLTLQLRELEADGIVHREVYHQVPPKVEY 84 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHC----T---TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHHh-cCCcCHHHHHHHh----c---ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEE
Confidence 34666665 6789999887633 1 357788999999999999999974 34444444
Done!