Query 008710
Match_columns 557
No_of_seqs 98 out of 105
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 15:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05536 Neurochondrin: Neuroc 100.0 6E-114 1E-118 948.5 45.9 506 13-552 2-521 (543)
2 KOG2611 Neurochondrin/leucine- 100.0 1E-102 2E-107 817.3 35.6 488 13-547 8-523 (698)
3 KOG2611 Neurochondrin/leucine- 99.7 5.4E-15 1.2E-19 157.4 22.5 215 307-523 298-548 (698)
4 PLN03200 cellulose synthase-in 96.2 0.2 4.4E-06 64.0 19.3 196 60-277 610-823 (2102)
5 PF05804 KAP: Kinesin-associat 95.5 6.4 0.00014 46.2 26.3 392 17-523 251-649 (708)
6 PF08167 RIX1: rRNA processing 93.4 0.16 3.4E-06 48.6 5.7 125 8-146 17-146 (165)
7 PLN03200 cellulose synthase-in 93.3 3.4 7.4E-05 53.4 18.5 201 15-235 608-813 (2102)
8 PF10508 Proteasom_PSMB: Prote 91.8 5.5 0.00012 44.7 16.1 252 18-293 121-425 (503)
9 PF05804 KAP: Kinesin-associat 91.5 14 0.0003 43.5 19.3 216 16-275 331-549 (708)
10 cd00020 ARM Armadillo/beta-cat 90.9 1.7 3.6E-05 37.1 8.7 97 86-185 21-118 (120)
11 PF04826 Arm_2: Armadillo-like 90.1 2.8 6.1E-05 43.1 10.9 182 85-290 29-210 (254)
12 cd00020 ARM Armadillo/beta-cat 88.4 5 0.00011 34.1 9.8 109 114-231 8-118 (120)
13 PF14666 RICTOR_M: Rapamycin-i 85.3 19 0.00042 36.5 13.3 132 30-167 2-174 (226)
14 PF03224 V-ATPase_H_N: V-ATPas 82.8 9.9 0.00021 39.7 10.5 157 17-188 106-270 (312)
15 PF05536 Neurochondrin: Neuroc 80.8 9.4 0.0002 43.5 10.1 140 391-545 46-190 (543)
16 KOG1077 Vesicle coat complex A 76.3 1.7E+02 0.0038 34.7 19.0 263 11-288 69-401 (938)
17 KOG3036 Protein involved in ce 66.0 75 0.0016 33.1 11.2 95 48-153 109-206 (293)
18 KOG1789 Endocytosis protein RM 62.5 1E+02 0.0022 38.2 12.8 174 83-265 1736-1942(2235)
19 PF04064 DUF384: Domain of unk 62.3 18 0.00039 29.2 4.9 49 466-523 1-49 (58)
20 KOG0168 Putative ubiquitin fus 55.7 62 0.0013 38.9 9.5 58 110-167 208-265 (1051)
21 PF10508 Proteasom_PSMB: Prote 54.8 3.6E+02 0.0077 30.4 25.0 137 86-235 91-233 (503)
22 PF08167 RIX1: rRNA processing 54.4 1E+02 0.0022 29.3 9.5 99 89-189 42-145 (165)
23 PTZ00429 beta-adaptin; Provisi 53.7 3.6E+02 0.0079 32.2 15.6 135 83-234 152-286 (746)
24 KOG4413 26S proteasome regulat 52.5 1.8E+02 0.0039 31.7 11.6 95 95-190 195-289 (524)
25 PF03224 V-ATPase_H_N: V-ATPas 51.5 1E+02 0.0023 32.1 9.9 117 16-142 146-268 (312)
26 PF14225 MOR2-PAG1_C: Cell mor 50.5 3.1E+02 0.0067 28.4 18.4 226 20-288 11-257 (262)
27 KOG4224 Armadillo repeat prote 49.8 2E+02 0.0044 31.8 11.5 125 17-163 252-383 (550)
28 PF05004 IFRD: Interferon-rela 48.1 3.6E+02 0.0078 28.5 13.4 76 17-101 87-163 (309)
29 KOG2171 Karyopherin (importin) 47.3 4.3E+02 0.0093 32.9 14.9 173 17-211 119-300 (1075)
30 PF04826 Arm_2: Armadillo-like 46.7 1.9E+02 0.004 29.9 10.6 96 89-189 112-207 (254)
31 PF08045 CDC14: Cell division 44.0 1.5E+02 0.0033 30.8 9.4 101 86-192 105-209 (257)
32 PF04499 SAPS: SIT4 phosphatas 43.6 1.5E+02 0.0033 33.3 10.1 120 115-235 64-231 (475)
33 KOG4500 Rho/Rac GTPase guanine 43.4 1.4E+02 0.003 33.7 9.3 197 15-235 264-477 (604)
34 KOG0166 Karyopherin (importin) 43.3 5.6E+02 0.012 29.4 17.8 147 15-163 108-286 (514)
35 KOG4199 Uncharacterized conser 43.3 2E+02 0.0044 31.5 10.3 121 54-189 278-405 (461)
36 smart00185 ARM Armadillo/beta- 41.3 54 0.0012 22.7 4.2 38 475-521 3-40 (41)
37 PF12348 CLASP_N: CLASP N term 41.2 2E+02 0.0044 28.0 9.6 195 18-232 5-205 (228)
38 PF06025 DUF913: Domain of Unk 40.4 3E+02 0.0065 30.0 11.5 169 311-494 28-206 (379)
39 PF14668 RICTOR_V: Rapamycin-i 37.8 52 0.0011 27.7 4.1 42 114-156 29-70 (73)
40 PF10165 Ric8: Guanine nucleot 37.8 2.5E+02 0.0054 31.3 10.6 43 125-167 43-85 (446)
41 KOG2160 Armadillo/beta-catenin 37.3 4.1E+02 0.0088 28.9 11.6 142 131-287 100-242 (342)
42 PF08389 Xpo1: Exportin 1-like 37.2 1.1E+02 0.0024 27.3 6.5 72 378-450 63-136 (148)
43 KOG4692 Predicted E3 ubiquitin 33.0 3.2E+02 0.007 29.9 9.8 136 377-523 186-325 (489)
44 KOG2973 Uncharacterized conser 32.6 97 0.0021 33.3 5.9 81 439-529 238-320 (353)
45 KOG4199 Uncharacterized conser 31.9 2.2E+02 0.0048 31.2 8.5 76 113-189 283-361 (461)
46 cd00256 VATPase_H VATPase_H, r 31.4 6.9E+02 0.015 27.9 12.6 106 23-142 150-257 (429)
47 PF12530 DUF3730: Protein of u 30.6 1.7E+02 0.0036 29.5 7.2 92 35-142 57-150 (234)
48 PF04821 TIMELESS: Timeless pr 30.0 2.2E+02 0.0048 29.4 8.1 119 408-529 3-155 (266)
49 PF02262 Cbl_N: CBL proto-onco 26.9 3.3E+02 0.0072 25.6 7.7 99 96-221 20-120 (130)
50 KOG0166 Karyopherin (importin) 26.8 1E+03 0.022 27.4 14.8 198 18-232 68-265 (514)
51 PF05004 IFRD: Interferon-rela 26.1 7.9E+02 0.017 25.9 13.5 108 17-138 44-155 (309)
52 PF10363 DUF2435: Protein of u 25.9 1.2E+02 0.0026 26.4 4.6 73 16-104 3-76 (92)
53 KOG2999 Regulator of Rac1, req 25.8 6.1E+02 0.013 29.6 10.9 134 89-235 100-244 (713)
54 PF14664 RICTOR_N: Rapamycin-i 25.7 8.9E+02 0.019 26.3 12.4 169 94-287 6-175 (371)
55 PF06371 Drf_GBD: Diaphanous G 25.1 1.1E+02 0.0025 28.7 4.6 55 128-185 130-185 (187)
56 KOG1048 Neural adherens juncti 24.2 3.1E+02 0.0068 32.6 8.7 116 57-188 564-685 (717)
57 KOG2160 Armadillo/beta-catenin 24.0 9.6E+02 0.021 26.1 15.1 119 58-189 120-242 (342)
58 PF12460 MMS19_C: RNAPII trans 22.4 1E+03 0.022 25.9 14.5 185 87-287 17-221 (415)
59 KOG2274 Predicted importin 9 [ 22.2 1.5E+03 0.033 27.9 16.9 202 61-288 529-741 (1005)
60 COG5209 RCD1 Uncharacterized p 22.0 63 0.0014 33.4 2.2 85 57-152 139-226 (315)
61 PF08822 DUF1804: Protein of u 21.7 4.9E+02 0.011 25.4 8.1 65 377-442 90-154 (165)
62 PF13764 E3_UbLigase_R4: E3 ub 21.1 4E+02 0.0087 32.2 8.9 119 110-232 121-257 (802)
63 PF00514 Arm: Armadillo/beta-c 20.6 1.6E+02 0.0035 20.9 3.7 39 474-521 2-40 (41)
64 KOG2759 Vacuolar H+-ATPase V1 20.5 6E+02 0.013 28.5 9.4 141 90-235 201-378 (442)
No 1
>PF05536 Neurochondrin: Neurochondrin
Probab=100.00 E-value=6.3e-114 Score=948.50 Aligned_cols=506 Identities=37% Similarity=0.561 Sum_probs=462.5
Q ss_pred CCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHH--HHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 008710 13 APSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAV--SLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (557)
Q Consensus 13 ~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~--~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (557)
+++++++||+++||+++||||||||+||||++|++|++ +.|+||+||||+||+|||+|+.+ |+++|+++|++
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~------~~~~~~~~~~~ 75 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSV------PSDCPPEEYLS 75 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCC------CCCCCHHHHHH
Confidence 46789999999999999999999999999999998876 46789999999999999999853 77889999999
Q ss_pred HHHHHHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhccc
Q 008710 91 LSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFAD 170 (557)
Q Consensus 91 LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~ 170 (557)
||||||||||++|++|+||+|++|||.|+++++++++..+++||||||++|+ ++++|++++++.|+|++|+.++. +
T Consensus 76 LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~---~ 151 (543)
T PF05536_consen 76 LAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP---N 151 (543)
T ss_pred HHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH---h
Confidence 9999999999999999999999999999999999998777899999999998 89999999999999999866554 5
Q ss_pred CcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCcc
Q 008710 171 GSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDS 250 (557)
Q Consensus 171 ~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~ 250 (557)
++++.|.|+++|+.++++.+.+. |+++.+.++.++++++++|+..|+..||++|++|+.||++. |.+ ..+..++.
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~~~~-~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~---~~~-~~~~~~~~ 226 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLGQKS-WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS---PIL-PLESPPSP 226 (543)
T ss_pred CcchHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC---Ccc-ccccCChh
Confidence 88999999999999999986554 55999999999999999999999999999999999999997 322 33566889
Q ss_pred chhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCccccCCCCCCCCcCCCCccchHHHhhhhhhHHHHHhcchhh
Q 008710 251 KWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELA 330 (557)
Q Consensus 251 ~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kF~lLll~la~VEVr~~Lee~~ 330 (557)
.|+++||+||++||+||++++||++||+|+++|++++|++|++++.+ ++++||++|++|++||||||+|+++.
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~-------~~~~~F~~Llv~l~~VEir~~L~~L~ 299 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDK-------KSGKKFLLLLVNLACVEIRMSLEELL 299 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCC-------CCcccHHHHHHHHHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999842 46789999999999999999999976
Q ss_pred hhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008710 331 YLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHER 410 (557)
Q Consensus 331 ~~~~~~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~l~~~~~~q~~~~L~Ea~~~VL~~L~~~~~~~~ 410 (557)
+. . +.+.+..++++|++||+|+|++|+|+++..|.++..+++++++|++++|+|+|++|++||+|++++++
T Consensus 300 ~~-----~----~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~ 370 (543)
T PF05536_consen 300 EQ-----L----NPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQ 370 (543)
T ss_pred hc-----C----CchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 53 1 23556678999999999999999999998887888899999999999999999999999999999998
Q ss_pred ccCchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCCCC-------CchhHHHHhhhhccccccchhhhhhhcc
Q 008710 411 KKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPS-------PFYSVFFLLPMLCQTTMEIEGCKDLVSS 483 (557)
Q Consensus 411 ~~~~~v~AsvRvLgawLAEe~sal~~~v~~LLPfll~~~~~~~~~-------~~d~lrfLLP~Lc~lT~e~~gr~il~~~ 483 (557)
+.+++++|+||+||+||||||+++|+++++|||||++|.+++++. ++|++|||||||||+|+|++|||+|+++
T Consensus 371 ~d~~~vlAsvR~L~~WLaEe~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~ 450 (543)
T PF05536_consen 371 KDPDFVLASVRVLGAWLAEETSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSN 450 (543)
T ss_pred cchHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhC
Confidence 855599999999999999999999999999999999999998877 9999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCcc-c---cCchHHHHHHHHHHHHHhhcccccc-CCCCccchHHHHHHHHHhhhhcc
Q 008710 484 GMYKAVAECLIKLIGPGRVT-V---EDDGCIFLACDTILNLLLKVKEQVR-FPMDESTSIHLLKALAYWTELNS 552 (557)
Q Consensus 484 ~~~~~L~~~l~~~~~~~~~~-~---~~~~~l~~aC~illNl~v~~~~~~~-~~~~~~~F~~ll~~l~~w~~~~~ 552 (557)
|||++|++||.++.+..+.. . ..+.+|+++||||||++++ +|.. ++ ++++|++||++|.+|+++++
T Consensus 451 ~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~--e~~~~~~-~~~~f~~ll~~l~~~~~~~~ 521 (543)
T PF05536_consen 451 GGWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVT--EPKMDVE-EEATFIELLKALLQWADPSN 521 (543)
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhc--ccccccc-cchHHHHHHHHHHHhcCCCC
Confidence 99999999999987764332 1 2235999999999999999 6666 55 88999999999999999875
No 2
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=100.00 E-value=9.7e-103 Score=817.25 Aligned_cols=488 Identities=37% Similarity=0.523 Sum_probs=439.6
Q ss_pred CCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHH--HHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 008710 13 APSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVS--LRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (557)
Q Consensus 13 ~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~--~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (557)
.++++.++|+.++++|+||||||||+||||++||+|+++ .++|||||||+||||||+|+.+ |+|||+++|++
T Consensus 8 ~r~~a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~------p~dcpd~Vy~~ 81 (698)
T KOG2611|consen 8 ERSPALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSG------PGDCPDDVYLQ 81 (698)
T ss_pred ccccchhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCC------CCCCcHHHHHH
Confidence 356788999999999999999999999999999999996 5779999999999999999843 89999999999
Q ss_pred HHHHHHHHhcCCccccCCcchhcchhHHHHHhhcccccc------hHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHH
Q 008710 91 LSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTS------ILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQ 164 (557)
Q Consensus 91 LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~------~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~ 164 (557)
++++||+|||++||+|+|++|++|||+|+++++++.|+. +++||||||++|| +++.|+++++..|+++++ +|
T Consensus 82 i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~-~Q 159 (698)
T KOG2611|consen 82 ISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVI-AQ 159 (698)
T ss_pred HHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHH-HH
Confidence 999999999999999999999999999999999988744 9999999999998 689999999999999998 69
Q ss_pred HhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHh
Q 008710 165 MSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244 (557)
Q Consensus 165 i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~ 244 (557)
||..++ +++++|++|++.++..+ .-.+|++.+..|++++.++|+||+++||+.|||+||+|+++|.++|+.-++.-+
T Consensus 160 ~y~~~~--~~~d~alal~Vlll~~~-~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl 236 (698)
T KOG2611|consen 160 MYELPD--GSHDMALALKVLLLLVS-KLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPL 236 (698)
T ss_pred HHhCCC--CchhHHHHHHHHHHHHH-hcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChh
Confidence 997555 66788888888888777 356788999999999999999999999999999999999999999655454433
Q ss_pred hcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCccccCCCCCCCCcCCCCccchHHHhhhhhhHHHHH
Q 008710 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAV 324 (557)
Q Consensus 245 ~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kF~lLll~la~VEVr~ 324 (557)
+ +.+|.+++|+|+.+||+||++|+||+|||+|++.|++++|++|++++. .+.+|+.|+.+++++||||
T Consensus 237 ~---~~~w~~~l~~G~~~IL~~kv~p~qr~pAL~Laa~~~hilG~~W~~~ge---------q~t~fL~ll~~la~~evrl 304 (698)
T KOG2611|consen 237 R---SMNWADYLRTGVVAILQNKVAPSQRLPALILAANMMHILGEKWLLGGE---------QKTVFLPLLDILADREVRL 304 (698)
T ss_pred h---hcchHHHHHHHHHHHHhcccCchhcChHHHHHHHHHHHhchhhcccCC---------ccceehhhhcchhhHHHHH
Confidence 2 459999999999999999999999999999999999999999999982 3578999999999999999
Q ss_pred hcchhhhhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008710 325 LLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQD 404 (557)
Q Consensus 325 ~Lee~~~~~~~~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~l~~~~~~q~~~~L~Ea~~~VL~~L~~ 404 (557)
.|||... | .|.+++++||+++|..|.+..+ ++.++.++++++.++.|+++|+.|+.||.+
T Consensus 305 ~lee~~~-------------E---iKa~vlt~c~a~~e~~i~~~~~----~q~dl~~kqk~t~~t~lk~af~~V~~il~~ 364 (698)
T KOG2611|consen 305 VLEESHV-------------E---IKASVLTNCLAYKEYEIPKDNS----TQEDLLLKQKQTTYTYLKIAFSLVEKILKY 364 (698)
T ss_pred hhhhccc-------------c---HHHHHHHHHHHHHHhccccccc----cHhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9998632 1 2788999999999999988876 356699999999999999999999999999
Q ss_pred hhhhhcccCchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCC-------------CCCchhHHHHhhhhcccc
Q 008710 405 AKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDE-------------PSPFYSVFFLLPMLCQTT 471 (557)
Q Consensus 405 ~~~~~~~~~~~v~AsvRvLgawLAEe~sal~~~v~~LLPfll~~~~~~~-------------~~~~d~lrfLLP~Lc~lT 471 (557)
+...+++ +||++|+||+||+||||+|+++|+.|++|||||..|+++.. ..|+|++|.+||++||.+
T Consensus 365 Vss~k~~-EPFvfasv~~l~AWla~et~~lr~~V~~llpfl~~~a~~~~~e~~~~~a~~r~i~PP~D~lr~~lP~~Ch~~ 443 (698)
T KOG2611|consen 365 VSSAKEN-EPFVFASVEALSAWLAKETKILRETVGALLPFLRDAAEHGIKEGTDLLASVRVIGPPIDSLRAELPVACHEQ 443 (698)
T ss_pred hhhcccc-CCceeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHhhhHHHHHH
Confidence 9988888 69999999999999999999999999999999999997621 368999999999999999
Q ss_pred ccchhhhhhhccCChHHHHHHHHHHhc---CC-CccccCc---hHHHHHHHHHHHHHhhccccccCCCCccchHHHHHHH
Q 008710 472 MEIEGCKDLVSSGMYKAVAECLIKLIG---PG-RVTVEDD---GCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKAL 544 (557)
Q Consensus 472 ~e~~gr~il~~~~~~~~L~~~l~~~~~---~~-~~~~~~~---~~l~~aC~illNl~v~~~~~~~~~~~~~~F~~ll~~l 544 (557)
+||.+|.+|+.+|.+++.+.|++.|-. ++ ..|.++| +..+++|+|+||++|+ +|..+. +++||++||+++
T Consensus 444 Ved~~r~~L~~~g~esl~~~f~~~~w~lpa~~~~~~~~PD~V~~~~Q~lC~I~mN~~v~--~p~~~~-rd~~f~~ll~~l 520 (698)
T KOG2611|consen 444 VEDLLRYMLSVKGLESLSSPFLSTCWLLPAERLKRMNEPDPVPTPEQMLCQITMNAEVC--KPLAYS-RDVAFVELLIKL 520 (698)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHccCcchhccccCCCCCCcHHHHHHHHHhhhhhc--cccccc-cccHHHHHHHHH
Confidence 999999999999999999999999822 22 3344444 7899999999999999 888887 789999999999
Q ss_pred HHh
Q 008710 545 AYW 547 (557)
Q Consensus 545 ~~w 547 (557)
.+=
T Consensus 521 ie~ 523 (698)
T KOG2611|consen 521 IER 523 (698)
T ss_pred HHh
Confidence 863
No 3
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=99.67 E-value=5.4e-15 Score=157.45 Aligned_cols=215 Identities=51% Similarity=0.692 Sum_probs=190.0
Q ss_pred ccchHHHhhhhhhHHH--HHhcchhhhhhhhcccCCCcchhhhhhhhh-----hhhhhHHHHHHHHHHHhhhccccCCC-
Q 008710 307 SDRCLLLVLESSRVEI--AVLLNELAYLKYEASKNTSSTAESFFSKQR-----NVAIAFSLVEKIIRLISNIAESEGGL- 378 (557)
Q Consensus 307 ~~kF~lLll~la~VEV--r~~Lee~~~~~~~~~~~~~~~~e~i~~~~~-----~L~~Cf~ilE~~I~~l~~~~e~~~~~- 378 (557)
.+..+.|+++...+|| .++.+..++++++-++.++ +.+++.++|+ .+...|+.+|+++.|++.+.+.+.-.
T Consensus 298 a~~evrl~lee~~~EiKa~vlt~c~a~~e~~i~~~~~-~q~dl~~kqk~t~~t~lk~af~~V~~il~~Vss~k~~EPFvf 376 (698)
T KOG2611|consen 298 ADREVRLVLEESHVEIKASVLTNCLAYKEYEIPKDNS-TQEDLLLKQKQTTYTYLKIAFSLVEKILKYVSSAKENEPFVF 376 (698)
T ss_pred hhHHHHHhhhhccccHHHHHHHHHHHHHHhccccccc-cHhhccchhhhhHHHHHHHHHHHHHHHHHHhhhccccCCcee
Confidence 5788999999999999 8889999999998888885 5567776766 88899999999999999865555211
Q ss_pred CChh----HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCchhHHHHHHHH----HHhhcCchhhHHHHHhhhhhhhhccc
Q 008710 379 IDDN----TFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVG----SYLAETPHACKEKVRELLQHMLSIEG 450 (557)
Q Consensus 379 l~~~----~~~q~~~~L~Ea~~~VL~~L~~~~~~~~~~~~~v~AsvRvLg----awLAEe~sal~~~v~~LLPfll~~~~ 450 (557)
.+-+ =+.|..++|.++++.++.||.++++|+++++.+..|++|.++ ++.+|-|..|..+|.+++.+++...+
T Consensus 377 asv~~l~AWla~et~~lr~~V~~llpfl~~~a~~~~~e~~~~~a~~r~i~PP~D~lr~~lP~~Ch~~Ved~~r~~L~~~g 456 (698)
T KOG2611|consen 377 ASVEALSAWLAKETKILRETVGALLPFLRDAAEHGIKEGTDLLASVRVIGPPIDSLRAELPVACHEQVEDLLRYMLSVKG 456 (698)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHhhhHHHHHHHHHHHHHHHHhcC
Confidence 1222 257999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred -cCCCCCchhHHHHhh------------------hhccccccchhhhhhhccCChHHHHHHHHHHhcCCCcccc-CchHH
Q 008710 451 -EDEPSPFYSVFFLLP------------------MLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVE-DDGCI 510 (557)
Q Consensus 451 -~~~~~~~d~lrfLLP------------------~Lc~lT~e~~gr~il~~~~~~~~L~~~l~~~~~~~~~~~~-~~~~l 510 (557)
++...+|..-+|+|| ++|||+|+-.+++-..-.++ ...++++.+..++.+..++ .+..+
T Consensus 457 ~esl~~~f~~~~w~lpa~~~~~~~~PD~V~~~~Q~lC~I~mN~~v~~p~~~~rd-~~f~~ll~~lie~lpelvdt~drli 535 (698)
T KOG2611|consen 457 LESLSSPFLSTCWLLPAERLKRMNEPDPVPTPEQMLCQITMNAEVCKPLAYSRD-VAFVELLIKLIERLPELVDTEDRLI 535 (698)
T ss_pred CccccchHHHHHHccCcchhccccCCCCCCcHHHHHHHHHhhhhhccccccccc-cHHHHHHHHHHHhchHhhCCCccee
Confidence 788899999999999 99999999999999988885 5678999999999877755 67899
Q ss_pred HHHHHHHHHHHhh
Q 008710 511 FLACDTILNLLLK 523 (557)
Q Consensus 511 ~~aC~illNl~v~ 523 (557)
+.+|+.+||++++
T Consensus 536 ~~an~ailglLl~ 548 (698)
T KOG2611|consen 536 FLANDAILGLLLK 548 (698)
T ss_pred eehhHHHHHHHHH
Confidence 9999999999998
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.25 E-value=0.2 Score=63.96 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=120.3
Q ss_pred CcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC-CccccCCcchhcchhHHHHHhhcccccchHHHHHHHH
Q 008710 60 GPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFL 138 (557)
Q Consensus 60 g~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~-~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L 138 (557)
|.+.|-.||+++ ...-+.-|..+|+.+|+ .++.-..--+.+-||.+++.++.++.+. ..++..+|
T Consensus 610 gL~~Lv~LL~sg-------------s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v-~keAA~AL 675 (2102)
T PLN03200 610 ALRTLIQLLSSS-------------KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAV-ATQSARAL 675 (2102)
T ss_pred cHHHHHHHHcCC-------------CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHH-HHHHHHHH
Confidence 567777888775 22335567788888885 6665433345577999999998766554 58899998
Q ss_pred HHHHhcCchhh-hHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhccccc-ccccChhhHHHHHHHHHHHHhhh
Q 008710 139 YLVTNATGDGV-TTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEI-ITNDYLSELSTIVTVVAREFAVL 216 (557)
Q Consensus 139 ~~ia~a~~~G~-~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~-~~~~~~~~l~~lv~~la~~F~~~ 216 (557)
..++.+..+++ ..+++.|+|+.|+.-+. .....-.+.|+..|..++....... ...+ ..++.+.+-....
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanLl~~~e~~~ei~~~------~~I~~Lv~lLr~G 747 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANLLSDPEVAAEALAE------DIILPLTRVLREG 747 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHHHcCchHHHHHHhc------CcHHHHHHHHHhC
Confidence 88854455554 45789999999855443 2444567899999999988863111 1111 2345555555566
Q ss_pred cchhhHHHHHHHHHhhccchhh--------------hHHHHhhcCCccc-hhHHHHHHHHHHHhcCCChhhhhhHH
Q 008710 217 HNALKFESLHLLTAVLSSNYSA--------------LLHEALRVMPDSK-WSMYMRVGVVAILQNRVAPAEKLQAL 277 (557)
Q Consensus 217 ~~~~Kfe~~~~L~~lL~~~~~~--------------~~~~~~~~~~~~~-W~~~ir~GL~~IL~skv~~~qR~~aL 277 (557)
.+..|=.++..|..+....... |+-+.++.+..++ =-.+...+|.-+.|.|-+...+.|.+
T Consensus 748 ~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~ 823 (2102)
T PLN03200 748 TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPW 823 (2102)
T ss_pred ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCch
Confidence 6667777777777776555100 1222233333222 23345566666666665555544443
No 5
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.55 E-value=6.4 Score=46.23 Aligned_cols=392 Identities=15% Similarity=0.209 Sum_probs=218.0
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
..+|...+++.++.--| |++.|+-++-. |......+.+.=+.+.|-++|..+ ....+-++++.|
T Consensus 251 ~~kk~~~l~~kQeqLlr-v~~~lLlNLAe--d~~ve~kM~~~~iV~~Lv~~Ldr~-------------n~ellil~v~fL 314 (708)
T PF05804_consen 251 ELKKLQTLIRKQEQLLR-VAFYLLLNLAE--DPRVELKMVNKGIVSLLVKCLDRE-------------NEELLILAVTFL 314 (708)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhc--ChHHHHHHHhcCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 45555666655544444 77777777765 667777777888888999999764 234778899999
Q ss_pred HHhcCCcccc---CCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 97 AAFCRVPEIA---SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 97 a~F~~~pe~A---~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
--+|..+|-- ...+++ |.|...+.. .....+..++..|+.++ ..++.+..+++.|.++++..-+. +. .
T Consensus 315 kkLSi~~ENK~~m~~~giV---~kL~kLl~s-~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~---d~-~ 385 (708)
T PF05804_consen 315 KKLSIFKENKDEMAESGIV---EKLLKLLPS-ENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLK---DP-N 385 (708)
T ss_pred HHHcCCHHHHHHHHHcCCH---HHHHHHhcC-CCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhC---CC-c
Confidence 9999766643 233444 455555543 44566899999999997 68899999999999999855433 22 2
Q ss_pred hHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHH-HhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccch
Q 008710 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVARE-FAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKW 252 (557)
Q Consensus 174 ~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~-F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W 252 (557)
....++.+|..|=..-.....- .+.. .++.+... +.......+.++.+++.-+=... ..... -+.+
T Consensus 386 ~~~val~iLy~LS~dd~~r~~f-~~Td----cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaql---m~~g--- 452 (708)
T PF05804_consen 386 FREVALKILYNLSMDDEARSMF-AYTD----CIPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQL---MCEG--- 452 (708)
T ss_pred hHHHHHHHHHHhccCHhhHHHH-hhcc----hHHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHH---HHhc---
Confidence 3355776665443221001111 1222 23333332 22333444556544444333222 11111 1111
Q ss_pred hHHHHHHHHHHHhcCCChhhhhhHH-HHHHHHHhhcCCccccCCCCCCCCcCCCCccchHHHhhhhhhHHHHHhcchhhh
Q 008710 253 SMYMRVGVVAILQNRVAPAEKLQAL-ILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAY 331 (557)
Q Consensus 253 ~~~ir~GL~~IL~skv~~~qR~~aL-~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kF~lLll~la~VEVr~~Lee~~~ 331 (557)
.||..++.. .-+-|+|.| ++...+-++-|. ....|.=.+..++.+ + -+..
T Consensus 453 -----~gL~~L~~r--a~~~~D~lLlKlIRNiS~h~~~----------------~k~~f~~~i~~L~~~-v---~~~~-- 503 (708)
T PF05804_consen 453 -----NGLQSLMKR--ALKTRDPLLLKLIRNISQHDGP----------------LKELFVDFIGDLAKI-V---SSGD-- 503 (708)
T ss_pred -----CcHHHHHHH--HHhcccHHHHHHHHHHHhcCch----------------HHHHHHHHHHHHHHH-h---hcCC--
Confidence 445444422 122445654 566666655331 012344444444442 1 0000
Q ss_pred hhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 008710 332 LKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERK 411 (557)
Q Consensus 332 ~~~~~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~l~~~~~~q~~~~L~Ea~~~VL~~L~~~~~~~~~ 411 (557)
....+..|.+++ ++- .-..++...+.+= -..+.||.+.=..|..
T Consensus 504 ------------------~ee~~vE~LGiL-------aNL---~~~~ld~~~ll~~--------~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 504 ------------------SEEFVVECLGIL-------ANL---TIPDLDWAQLLQE--------YNLLPWLKDLLKPGAS 547 (708)
T ss_pred ------------------cHHHHHHHHHHH-------Hhc---ccCCcCHHHHHHh--------CCHHHHHHHHhCCCCC
Confidence 122333343332 221 0011333333221 2356677765445555
Q ss_pred cCchhHHHHHHHHHHhhcCchhhHHHHH--hhhhhhhhccccCCCCCchhHHHHhhhhccccccchhhhhhhccCChHHH
Q 008710 412 KGNDLLASVRLVGSYLAETPHACKEKVR--ELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAV 489 (557)
Q Consensus 412 ~~~~v~AsvRvLgawLAEe~sal~~~v~--~LLPfll~~~~~~~~~~~d~lrfLLP~Lc~lT~e~~gr~il~~~~~~~~L 489 (557)
.++.++-+|.++|. +|-++.+ ...+. ++.+.++.+.+.-..+ -+.+.=++=.+.|+...+..|+.+++..+ +
T Consensus 548 ~dDl~LE~Vi~~gt-la~d~~~-A~lL~~sgli~~Li~LL~~kqeD-dE~VlQil~~f~~ll~h~~tr~~ll~~~~---~ 621 (708)
T PF05804_consen 548 EDDLLLEVVILLGT-LASDPEC-APLLAKSGLIPTLIELLNAKQED-DEIVLQILYVFYQLLFHEETREVLLKETE---I 621 (708)
T ss_pred ChHHHHHHHHHHHH-HHCCHHH-HHHHHhCChHHHHHHHHHhhCch-HHHHHHHHHHHHHHHcChHHHHHHHhccc---h
Confidence 46678999988884 4444443 34433 7788888888642222 23333344455666667889999986433 4
Q ss_pred HHHHHHHhcCCCccccCchHHHHHHHHHHHHHhh
Q 008710 490 AECLIKLIGPGRVTVEDDGCIFLACDTILNLLLK 523 (557)
Q Consensus 490 ~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~ 523 (557)
..||+..... ....+.-.|+..|+++.-
T Consensus 622 ~~ylidL~~d------~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 622 PAYLIDLMHD------KNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHhcC------CCHHHHHHHHHHHHHHHH
Confidence 4566655432 347899999999999988
No 6
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.36 E-value=0.16 Score=48.58 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=81.1
Q ss_pred CCCCCCCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHH
Q 008710 8 QPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDA 87 (557)
Q Consensus 8 ~p~~~~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~ 87 (557)
+|.......-..+..++|++++..+|++|+-|++.+++.++.+ +|..=|-.++..|+.-=.. .++..
T Consensus 17 ~~~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e----~l~~~~~~W~~~Ll~~L~~---------~~~~~ 83 (165)
T PF08167_consen 17 APSKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE----ILLSHGSQWLRALLSILEK---------PDPPS 83 (165)
T ss_pred ccCHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHcC---------CCCHH
Confidence 3433445556889999999999999999999999999976654 3334455677776654311 12444
Q ss_pred HHHHHHHHHHHhc----CCccccCCcchhcchhHHHHHhhcccc-cchHHHHHHHHHHHHhcCc
Q 008710 88 YLQLSVTVLAAFC----RVPEIASSEDMVSKVPPILELMLKESG-TSILEECYEFLYLVTNATG 146 (557)
Q Consensus 88 ~~~LavsvLa~F~----~~pe~A~~~~~v~~IP~l~~~l~~~~~-~~~~~~~~~~L~~ia~a~~ 146 (557)
.+..++..|+-.. ..|++.+ +-.+.++|.++..+.+-.+ ......|+++|..+-..+|
T Consensus 84 ~~~~ai~~L~~l~~~~~~~p~l~R-ei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 84 VLEAAIITLTRLFDLIRGKPTLTR-EIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHH-HHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 5556666666555 3888863 3356777777777654222 3445778888765532344
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.28 E-value=3.4 Score=53.43 Aligned_cols=201 Identities=12% Similarity=0.071 Sum_probs=133.0
Q ss_pred CccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
...++.-.+||++.+++.|=-+.-.+.+++.+ +.+-...+-++=|..-+-.||+++. ...-.+-|.+
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~-~~d~~~avv~agaIpPLV~LLss~~------------~~v~keAA~A 674 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSS-RQDLCESLATDEIINPCIKLLTNNT------------EAVATQSARA 674 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCCHHHHHHHHhcCC------------hHHHHHHHHH
Confidence 35788889999987666666666777888874 4555566777778888888998862 2334566667
Q ss_pred HHHHhcC-CccccCCcchhc--chhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccC
Q 008710 95 VLAAFCR-VPEIASSEDMVS--KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (557)
Q Consensus 95 vLa~F~~-~pe~A~~~~~v~--~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~ 171 (557)
+...|.. .++ ....++. -||.|++.+.. .+..+++.|...|..++ ..++|..++...|+|+.|...+.. ..
T Consensus 675 L~nL~~~~~~~--q~~~~v~~GaV~pL~~LL~~-~d~~v~e~Al~ALanLl-~~~e~~~ei~~~~~I~~Lv~lLr~--G~ 748 (2102)
T PLN03200 675 LAALSRSIKEN--RKVSYAAEDAIKPLIKLAKS-SSIEVAEQAVCALANLL-SDPEVAAEALAEDIILPLTRVLRE--GT 748 (2102)
T ss_pred HHHHHhCCCHH--HHHHHHHcCCHHHHHHHHhC-CChHHHHHHHHHHHHHH-cCchHHHHHHhcCcHHHHHHHHHh--CC
Confidence 6666642 221 1122333 48999999965 45566799999999998 699999999999999998665552 33
Q ss_pred cchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHh-hh-cchhhHHHHHHHHHhhccc
Q 008710 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFA-VL-HNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 172 s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~-~~-~~~~Kfe~~~~L~~lL~~~ 235 (557)
....+.|...|..|..+...+.+...+..... .+..+..-.. .+ ....-+|++..|..+....
T Consensus 749 ~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g-~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~ 813 (2102)
T PLN03200 749 LEGKRNAARALAQLLKHFPVDDVLKDSVQCRG-TVLALVDLLNSTDLDSSATSEALEALALLARTK 813 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC-cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhc
Confidence 45678899999999988765553322222222 2222222111 11 1223357788888887654
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.76 E-value=5.5 Score=44.71 Aligned_cols=252 Identities=16% Similarity=0.200 Sum_probs=128.7
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 008710 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (557)
Q Consensus 18 l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (557)
+.-.+..|+..+.+=.-.+.-+++++.+.. .....+|+.-+..-|.+|+.+. ++..+-=..+ ++.
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~---------~~~vR~Rv~e----l~v 185 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQS---------SDIVRCRVYE----LLV 185 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhcc---------CHHHHHHHHH----HHH
Confidence 333444444444444444555555555532 2334455555555566666552 1111211222 333
Q ss_pred Hhc-CCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCc----
Q 008710 98 AFC-RVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS---- 172 (557)
Q Consensus 98 ~F~-~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s---- 172 (557)
..+ ..|+.+.--.--+-++.+++.+.. +|.-+--.|+++|+.+| .++.|.+.+.+.|++++++.-+......+
T Consensus 186 ~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La-~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~ 263 (503)
T PF10508_consen 186 EIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELA-ETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS 263 (503)
T ss_pred HHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHH-cChhHHHHHHhCCHHHHHHHHHhccccCCcccc
Confidence 333 466666211112256777777766 66555578999999998 59999999999999999865543221111
Q ss_pred ch---------------HHHH----HHHHHHHHhhcc----------------------c-ccccccChhhHHHHHHHHH
Q 008710 173 RL---------------MELA----IRLLQLMLSKLS----------------------L-EIITNDYLSELSTIVTVVA 210 (557)
Q Consensus 173 ~~---------------~e~A----l~LL~~Ll~~~~----------------------~-~~~~~~~~~~l~~lv~~la 210 (557)
.- .... .+++..+..... . ..+...+...+..++.++.
T Consensus 264 ~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~ 343 (503)
T PF10508_consen 264 LLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIG 343 (503)
T ss_pred hhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHH
Confidence 00 0001 111111111100 0 0011233334445556666
Q ss_pred HHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhHHHHHH-----HHHHHhcCCC-hhhhhhHHHHHHHHH
Q 008710 211 REFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVG-----VVAILQNRVA-PAEKLQALILAESIV 284 (557)
Q Consensus 211 ~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~G-----L~~IL~skv~-~~qR~~aL~Laa~ll 284 (557)
........+.|..+++-|+.+|....+.+-.+.. .....|-..+..+ +..++ |=| |+-|-.++.+...+.
T Consensus 344 ~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~--~~~~~w~~~~~~~~~~~~l~~~~--~qPF~elr~a~~~~l~~l~ 419 (503)
T PF10508_consen 344 DAIKSGSTELKLRALHALASILTSGTDRQDNDIL--SITESWYESLSGSPLSNLLMSLL--KQPFPELRCAAYRLLQALA 419 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhcCCchHHHHHHHh--cCCchHHHHHHHHHHHHHh
Confidence 6555556678888899999988655221121111 1123443322211 22222 345 777888888777776
Q ss_pred hhcCCcccc
Q 008710 285 SIKGEEWLI 293 (557)
Q Consensus 285 ~l~G~~Wl~ 293 (557)
..- |-.
T Consensus 420 ~~~---Wg~ 425 (503)
T PF10508_consen 420 AQP---WGQ 425 (503)
T ss_pred cCH---HHH
Confidence 663 663
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=91.51 E-value=14 Score=43.52 Aligned_cols=216 Identities=15% Similarity=0.217 Sum_probs=119.6
Q ss_pred ccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCc-chHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 16 PSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGP-RFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 16 ~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~-~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
..+++-.++|++++.+-.-++|-++-++-- |.+.+.++- ..|. +=|--||... .++.+++.
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSf--d~~~R~~mV-~~GlIPkLv~LL~d~---------------~~~~val~ 392 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSF--DPELRSQMV-SLGLIPKLVELLKDP---------------NFREVALK 392 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCc--CHHHHHHHH-HCCCcHHHHHHhCCC---------------chHHHHHH
Confidence 356666777776654434444433333332 333333222 2232 2222333321 24567999
Q ss_pred HHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcch
Q 008710 95 VLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRL 174 (557)
Q Consensus 95 vLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~ 174 (557)
+|.-+|.+++--.-=...+-||.+++.+...+++.+-.+....+..+| ..++-++.+++.|+++.|.....+ ..
T Consensus 393 iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa-~~~rnaqlm~~g~gL~~L~~ra~~-----~~ 466 (708)
T PF05804_consen 393 ILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA-LNKRNAQLMCEGNGLQSLMKRALK-----TR 466 (708)
T ss_pred HHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh-cCHHHHHHHHhcCcHHHHHHHHHh-----cc
Confidence 999999977654333444568999999987776655566777778887 688889999999999998765543 11
Q ss_pred HHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHh-hhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchh
Q 008710 175 MELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFA-VLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (557)
Q Consensus 175 ~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~-~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~ 253 (557)
-...++++-++=.+-+ .....|...+..|++... ....+.+.|++.+|+-+-.+ +-.|.
T Consensus 467 D~lLlKlIRNiS~h~~------~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~--------------~ld~~ 526 (708)
T PF05804_consen 467 DPLLLKLIRNISQHDG------PLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP--------------DLDWA 526 (708)
T ss_pred cHHHHHHHHHHHhcCc------hHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC--------------CcCHH
Confidence 2334444444322211 111223334444444322 23456677777777665433 33555
Q ss_pred HHHHH-HHHHHHhcCCChhhhhh
Q 008710 254 MYMRV-GVVAILQNRVAPAEKLQ 275 (557)
Q Consensus 254 ~~ir~-GL~~IL~skv~~~qR~~ 275 (557)
.-+.. ++-+.|.+.+.|..-.+
T Consensus 527 ~ll~~~~llp~L~~~L~~g~~~d 549 (708)
T PF05804_consen 527 QLLQEYNLLPWLKDLLKPGASED 549 (708)
T ss_pred HHHHhCCHHHHHHHHhCCCCCCh
Confidence 44433 55566655554443333
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.90 E-value=1.7 Score=37.13 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCC-ccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHH
Q 008710 86 DAYLQLSVTVLAAFCRV-PEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQ 164 (557)
Q Consensus 86 ~~~~~LavsvLa~F~~~-pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~ 164 (557)
...+.-++..|..+|.. |+....---.+-||.+++.+.. ++..+...|+.+|..++...+...+.+.+.|.++.+...
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~ 99 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNL 99 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHH
Confidence 45678888889999975 5555311112678999999876 456777999999999974444667777889999998665
Q ss_pred HhhcccCcchHHHHHHHHHHH
Q 008710 165 MSTFADGSRLMELAIRLLQLM 185 (557)
Q Consensus 165 i~~~~~~s~~~e~Al~LL~~L 185 (557)
+.. ....-.+.|+.+|..|
T Consensus 100 l~~--~~~~~~~~a~~~l~~l 118 (120)
T cd00020 100 LDS--SNEDIQKNATGALSNL 118 (120)
T ss_pred Hhc--CCHHHHHHHHHHHHHh
Confidence 542 2333456666666655
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=90.11 E-value=2.8 Score=43.07 Aligned_cols=182 Identities=15% Similarity=0.145 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHH
Q 008710 85 RDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQ 164 (557)
Q Consensus 85 ~~~~~~LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~ 164 (557)
-+...-.+++..++|...-++.++- +-||.+.+.+.. ++.++-..++.+|..++ ...+-+... +. .+..+|..
T Consensus 29 i~e~al~al~n~aaf~~nq~~Ir~~---Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls-~~~en~~~I-k~-~i~~Vc~~ 101 (254)
T PF04826_consen 29 IQEKALIALGNSAAFPFNQDIIRDL---GGISLIGSLLND-PNPSVREKALNALNNLS-VNDENQEQI-KM-YIPQVCEE 101 (254)
T ss_pred HHHHHHHHHHhhccChhHHHHHHHc---CCHHHHHHHcCC-CChHHHHHHHHHHHhcC-CChhhHHHH-HH-HHHHHHHH
Confidence 4556667777788888766666653 445778888776 44565678999999996 455555554 32 47777776
Q ss_pred HhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHh
Q 008710 165 MSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244 (557)
Q Consensus 165 i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~ 244 (557)
+...+-.+.....++++|..|=.. +.+-.-+...++.+-+-........|++++++|.-|=.. +.-..+.+
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~-------~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~Ll 172 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVT-------NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTRELL 172 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCC-------cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHHH
Confidence 665455566667788888877222 122222333444444444455567889999988766544 33333332
Q ss_pred hcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCc
Q 008710 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEE 290 (557)
Q Consensus 245 ~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~ 290 (557)
......++..++++..+.+-...+|.+.+++-+.+..+
T Consensus 173 --------~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 173 --------SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred --------hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11234678889999999999999999999999988754
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.36 E-value=5 Score=34.12 Aligned_cols=109 Identities=13% Similarity=0.197 Sum_probs=68.9
Q ss_pred chhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhccccc
Q 008710 114 KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEI 193 (557)
Q Consensus 114 ~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~ 193 (557)
-||.+++.+.+.+ ......++.+|..++...+++.+.+++.|+++.+...+.. +...-...|+..|..+.....
T Consensus 8 ~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~--- 81 (120)
T cd00020 8 GLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPE--- 81 (120)
T ss_pred ChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcH---
Confidence 4688888887654 4557899999999975458999999999999998665542 334455677778777765541
Q ss_pred ccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHh
Q 008710 194 ITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAV 231 (557)
Q Consensus 194 ~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~l 231 (557)
+....+. .+++.+.+-....+...+-.++.+|..+
T Consensus 82 ---~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 82 ---DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ---HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 1111111 1344444444444555555556655544
No 13
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=85.27 E-value=19 Score=36.46 Aligned_cols=132 Identities=19% Similarity=0.333 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHhcCCCCCHH----------------HHHHHHHh-cCcchHHHHHh--cCCCCCCCCC--CCCcchHHH
Q 008710 30 DEQRLAGLLVVTKFCKGDDAV----------------SLRKIYDA-VGPRFLDRLLR--TGLGKGINSG--NSSENRDAY 88 (557)
Q Consensus 30 D~~kfagLlLvtkl~~~~d~~----------------~~~~v~~A-ig~~FL~RLL~--T~~~~~~~~~--~~~~~~~~~ 88 (557)
|+..|-.++.=|+++..+|.. .-+|+-|+ -..+|+.||+. .+. +-..+. ....+..-|
T Consensus 2 Dd~~F~~~l~ds~VL~~Kd~~~WnW~~I~~ll~gpl~n~krl~e~~~~~kF~kRLl~FyrP~-~~rfs~~~~~~~~~~~y 80 (226)
T PF14666_consen 2 DDATFRQMLRDSKVLTTKDFTKWNWDLILELLEGPLLNPKRLDEALKSTKFFKRLLSFYRPF-KYRFSNLDLNTKNNQKY 80 (226)
T ss_pred CHHHHHHHHHhcCccccCCCCccCHHHHHHHHhCCccccchhHHHHhcChHHHHHHHhcCCc-cccccccccccccchHH
Confidence 677888888888888875432 23577777 67899999994 211 100010 112345889
Q ss_pred HHHHHHHHHHhcCCccccC---CcchhcchhHHHHHhhccc-----------------ccchHHHHHHHHHHHHhcCchh
Q 008710 89 LQLSVTVLAAFCRVPEIAS---SEDMVSKVPPILELMLKES-----------------GTSILEECYEFLYLVTNATGDG 148 (557)
Q Consensus 89 ~~LavsvLa~F~~~pe~A~---~~~~v~~IP~l~~~l~~~~-----------------~~~~~~~~~~~L~~ia~a~~~G 148 (557)
..+|..++..+-..||-.. +.++ ||.+.+++.+.+ ..++..+=+..+=.++ ++++|
T Consensus 81 ~~vGc~L~~~Ll~~~eG~~~l~~~~l---l~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS-~~~~G 156 (226)
T PF14666_consen 81 VRVGCQLLETLLSSPEGIKYLSESKL---LPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLS-STPNG 156 (226)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHccH---HHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHh-CChhH
Confidence 9999999999999888553 4444 455666664331 1566566666665555 89999
Q ss_pred hhHhhhcCChHHHHHHHhh
Q 008710 149 VTTLYESGGMKVLAFQMST 167 (557)
Q Consensus 149 ~~~l~~~g~i~~l~~~i~~ 167 (557)
.+.+-+.|....+ ..|..
T Consensus 157 l~lLe~~~if~~l-~~i~~ 174 (226)
T PF14666_consen 157 LKLLERWNIFTML-YHIFS 174 (226)
T ss_pred HHHHHHCCHHHHH-HHHHc
Confidence 9999999988875 55543
No 14
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.84 E-value=9.9 Score=39.72 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=90.4
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
...-.+++|...|..=+..++.++|+++..++...-...=+.+ +.+-..|++.. ..+...|...|+..|
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l--~~ll~~L~~~l---------~~~~~~~~~~av~~L 174 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL--PKLLQWLSSQL---------SSSDSELQYIAVQCL 174 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH--HHHHHHHH-TT----------HHHH---HHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH--HHHHHHHHHhh---------cCCCcchHHHHHHHH
Confidence 6777788888888888888999999998875544332111111 22223333321 123566789999999
Q ss_pred HHhcCCccccC---CcchhcchhHHHHHh---hcccccchHHHHHHHHHHH--HhcCchhhhHhhhcCChHHHHHHHhhc
Q 008710 97 AAFCRVPEIAS---SEDMVSKVPPILELM---LKESGTSILEECYEFLYLV--TNATGDGVTTLYESGGMKVLAFQMSTF 168 (557)
Q Consensus 97 a~F~~~pe~A~---~~~~v~~IP~l~~~l---~~~~~~~~~~~~~~~L~~i--a~a~~~G~~~l~~~g~i~~l~~~i~~~ 168 (557)
..+.+.|+... + .+.++.|.+++ ...+....+..-|+.+.++ -+-.++..+.+.+.+.|+.++..+..
T Consensus 175 ~~LL~~~~~R~~f~~---~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~- 250 (312)
T PF03224_consen 175 QNLLRSKEYRQVFWK---SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD- 250 (312)
T ss_dssp HHHHTSHHHHHHHHT---HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH-
T ss_pred HHHhCcchhHHHHHh---cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh-
Confidence 99999888773 4 44455566665 2333445568889988776 33677899999999999998665543
Q ss_pred ccCcchHHHHHHHHHHHHhh
Q 008710 169 ADGSRLMELAIRLLQLMLSK 188 (557)
Q Consensus 169 ~~~s~~~e~Al~LL~~Ll~~ 188 (557)
....--...++.+|..+++.
T Consensus 251 ~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 251 SIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp --SHHHHHHHHHHHHHTTSS
T ss_pred cccchHHHHHHHHHHHHHhc
Confidence 22222234444445555444
No 15
>PF05536 Neurochondrin: Neurochondrin
Probab=80.78 E-value=9.4 Score=43.47 Aligned_cols=140 Identities=21% Similarity=0.248 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHh---hh--hhcccCchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCCCCCchhHHHHhh
Q 008710 391 LNETIGVVLEYLQDA---KE--HERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLP 465 (557)
Q Consensus 391 L~Ea~~~VL~~L~~~---~~--~~~~~~~~v~AsvRvLgawLAEe~sal~~~v~~LLPfll~~~~~~~~~~~d~lrfLLP 465 (557)
+-|++| ..||..- +. .+-......=-++-+|.++...+..+--+++..-+|+++..-....+ ...+.--+-
T Consensus 46 v~~aig--~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalq 121 (543)
T PF05536_consen 46 VFEAIG--FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQ 121 (543)
T ss_pred HHHhcC--hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHH
Confidence 337777 4777763 11 11111223566788899999977777779999999999999865333 234444455
Q ss_pred hhccccccchhhhhhhccCChHHHHHHHHHHhcCCCccccCchHHHHHHHHHHHHHhhccccccCCCCccchHHHHHHHH
Q 008710 466 MLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALA 545 (557)
Q Consensus 466 ~Lc~lT~e~~gr~il~~~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~~~~~~~~~~~~~F~~ll~~l~ 545 (557)
-|..+...++|++.|++.|+...|++.+.. ..-.+..+..++.|++.. ............|..++..++
T Consensus 122 cL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----------~~~~~E~Al~lL~~Lls~-~~~~~~~~~~~~l~~il~~La 190 (543)
T PF05536_consen 122 CLLAIASSPEGAKALLESGAVPALCEIIPN----------QSFQMEIALNLLLNLLSR-LGQKSWAEDSQLLHSILPSLA 190 (543)
T ss_pred HHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----------CcchHHHHHHHHHHHHHh-cchhhhhhhHHHHHHHHHHHH
Confidence 566777899999999999999999998866 124688899999999888 222222333445555554443
No 16
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.26 E-value=1.7e+02 Score=34.70 Aligned_cols=263 Identities=11% Similarity=0.117 Sum_probs=146.1
Q ss_pred CCCCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHH-------------------------------HHHHhc
Q 008710 11 ESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLR-------------------------------KIYDAV 59 (557)
Q Consensus 11 ~~~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~-------------------------------~v~~Ai 59 (557)
|.+.+....+.++||++..=++|++|-+.+.=++.. +.+-.+ ..-+|.
T Consensus 69 g~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~-n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~ 147 (938)
T KOG1077|consen 69 GYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNE-NSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF 147 (938)
T ss_pred cCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhc-chHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence 456677889999999999999999998776655553 222111 222232
Q ss_pred CcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCccccCCcchhcchhHH---------------HHHhhc
Q 008710 60 GPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPI---------------LELMLK 124 (557)
Q Consensus 60 g~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~~pe~A~~~~~v~~IP~l---------------~~~l~~ 124 (557)
..+ +.+||++++ +-.-+=++=|+.+|+-|=..||+-.-.+-..||-.| ++++.+
T Consensus 148 ~~D-I~KlLvS~~----------~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 148 ADD-IPKLLVSGS----------SMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred hhh-hHHHHhCCc----------chHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 222 348888863 235566788999999999999988654555554333 233333
Q ss_pred ccc---cchHHHHHHHHHHHHhcCchh-hhHhhhcC-----ChHHHHH--HHhhcccCcchHHHHHHHHHHHHhhccccc
Q 008710 125 ESG---TSILEECYEFLYLVTNATGDG-VTTLYESG-----GMKVLAF--QMSTFADGSRLMELAIRLLQLMLSKLSLEI 193 (557)
Q Consensus 125 ~~~---~~~~~~~~~~L~~ia~a~~~G-~~~l~~~g-----~i~~l~~--~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~ 193 (557)
..+ -+.+..|..-|..+++++.-. ++... ++ ...+++. |+|.-++.+-....-.+.|..+|.+... .
T Consensus 217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTy-y~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~-~ 294 (938)
T KOG1077|consen 217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTY-YFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQE-P 294 (938)
T ss_pred cCCHHHhhhHHHHHHHHHHHHhhcccchhhcee-ecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhcccc-C
Confidence 222 334455556665554322222 22211 11 1122222 2333244444556677888999988741 1
Q ss_pred ccccChhh----HHHHHHHHHHHHhhhcc-hhhHHHHHHHHHhhccchhhh-----HHHHhhcCCccchhHHHHHHHHHH
Q 008710 194 ITNDYLSE----LSTIVTVVAREFAVLHN-ALKFESLHLLTAVLSSNYSAL-----LHEALRVMPDSKWSMYMRVGVVAI 263 (557)
Q Consensus 194 ~~~~~~~~----l~~lv~~la~~F~~~~~-~~Kfe~~~~L~~lL~~~~~~~-----~~~~~~~~~~~~W~~~ir~GL~~I 263 (557)
..+.+.+. =+-++.+|+-.|..+.. +.=-.+|..|..||+..+ .. ++.--+.+.+.--.+.++.-...|
T Consensus 295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE-~NiRYLaLEsm~~L~ss~~s~davK~h~d~I 373 (938)
T KOG1077|consen 295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE-TNIRYLALESMCKLASSEFSIDAVKKHQDTI 373 (938)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc-ccchhhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 11122211 12355667766665543 444667899999998873 22 111111123333355666666666
Q ss_pred HhcCC---ChhhhhhHHHHHHHHHhhcC
Q 008710 264 LQNRV---APAEKLQALILAESIVSIKG 288 (557)
Q Consensus 264 L~skv---~~~qR~~aL~Laa~ll~l~G 288 (557)
+.|-= .-+-|.-|+.|...|.|.-.
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhchhh
Confidence 65432 33456667777777766543
No 17
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=65.95 E-value=75 Score=33.14 Aligned_cols=95 Identities=22% Similarity=0.168 Sum_probs=64.7
Q ss_pred CHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHH-HHHHHHHhcC--CccccCCcchhcchhHHHHHhhc
Q 008710 48 DAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQL-SVTVLAAFCR--VPEIASSEDMVSKVPPILELMLK 124 (557)
Q Consensus 48 d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~L-avsvLa~F~~--~pe~A~~~~~v~~IP~l~~~l~~ 124 (557)
.+++.+.-.+|==|-|+.+.|.|+... -+.+|+.| ++.|++++-. |.|+-+-=--.+-||+.+.+|..
T Consensus 109 HpdTr~~FL~A~iPlylYpfL~Tt~~~---------r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~ 179 (293)
T KOG3036|consen 109 HPDTRRAFLRAHIPLYLYPFLNTTSKS---------RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMES 179 (293)
T ss_pred CcchHHHHHHccChhhhHHhhhccccC---------CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhc
Confidence 344566666777789999999998432 37788877 6899999985 55544322234567999999998
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhHhh
Q 008710 125 ESGTSILEECYEFLYLVTNATGDGVTTLY 153 (557)
Q Consensus 125 ~~~~~~~~~~~~~L~~ia~a~~~G~~~l~ 153 (557)
+++.+- .-|.-++.-|- ..+.|-.+.+
T Consensus 180 GSelSK-tvA~fIlqKIl-ldD~GL~YiC 206 (293)
T KOG3036|consen 180 GSELSK-TVATFILQKIL-LDDVGLYYIC 206 (293)
T ss_pred ccHHHH-HHHHHHHHHHh-hccccHHHHH
Confidence 887653 34445556664 4666766644
No 18
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=62.52 E-value=1e+02 Score=38.20 Aligned_cols=174 Identities=16% Similarity=0.196 Sum_probs=113.3
Q ss_pred cchHHHHHHHHHHHHHhcC-CccccC----CcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCC
Q 008710 83 ENRDAYLQLSVTVLAAFCR-VPEIAS----SEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGG 157 (557)
Q Consensus 83 ~~~~~~~~LavsvLa~F~~-~pe~A~----~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~ 157 (557)
.|.+.-..++++-|..+-+ .||+|+ ...++...|.|...+....+..+-..|++++..+. +..+--..+.+.|+
T Consensus 1736 lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1736 LPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNV 1814 (2235)
T ss_pred CChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhH
Confidence 4667788999999999886 999995 66889999999999987777677799999998884 79999999999998
Q ss_pred hHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccc----------------cccChhhHHHHHHHHHHHHhhh-----
Q 008710 158 MKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEII----------------TNDYLSELSTIVTVVAREFAVL----- 216 (557)
Q Consensus 158 i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~----------------~~~~~~~l~~lv~~la~~F~~~----- 216 (557)
+..+. ++. ....-..+.+++.|..|-+... -.| ..++.++=+ .-|..|+..
T Consensus 1815 L~~LL-~lL--HS~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRA----qaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1815 LTTLL-TLL--HSQPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRA----QAAELLAKLQADKL 1886 (2235)
T ss_pred HHHHH-HHH--hcChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHH----HHHHHHHHhhhccc
Confidence 88764 343 1222356788888877665531 111 112222222 233333322
Q ss_pred cc-hhhHHHHHHHHHhhccch----hhhHHHH--hhcCCccchhHHHHHHHHHHHh
Q 008710 217 HN-ALKFESLHLLTAVLSSNY----SALLHEA--LRVMPDSKWSMYMRVGVVAILQ 265 (557)
Q Consensus 217 ~~-~~Kfe~~~~L~~lL~~~~----~~~~~~~--~~~~~~~~W~~~ir~GL~~IL~ 265 (557)
|+ -..+-+.++|+..|...- ++.+|.. ....|.-.|-+..|..+..++.
T Consensus 1887 ~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~ 1942 (2235)
T KOG1789|consen 1887 TGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIID 1942 (2235)
T ss_pred cCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHH
Confidence 12 223566777777774431 2334433 2234666898777777666653
No 19
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=62.32 E-value=18 Score=29.15 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=41.8
Q ss_pred hhccccccchhhhhhhccCChHHHHHHHHHHhcCCCccccCchHHHHHHHHHHHHHhh
Q 008710 466 MLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLK 523 (557)
Q Consensus 466 ~Lc~lT~e~~gr~il~~~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~ 523 (557)
+|.++++...||+.|-+.+.+.++.++-.. +.|..+..+|.=+.|+++-
T Consensus 1 ~LllL~~T~~GR~~lR~~~vY~IlRe~h~~---------E~d~~V~e~~erlV~iLir 49 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKGVYPILRELHKW---------EEDEEVQEACERLVQILIR 49 (58)
T ss_pred CHhHHhccHHHHHHHHHcCchHHHHHHHhc---------cCCHHHHHHHHHHHHHHhc
Confidence 366788899999999999999999886532 4568899999999999998
No 20
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=62 Score=38.87 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=47.2
Q ss_pred chhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhh
Q 008710 110 DMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMST 167 (557)
Q Consensus 110 ~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~ 167 (557)
-|-.-||.|+.+++......+--.|+.||+-.+-..|+--..++++++|+.++..+..
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~ 265 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT 265 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh
Confidence 3445579999999887776666899999987766799999999999999998776543
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=54.79 E-value=3.6e+02 Score=30.41 Aligned_cols=137 Identities=15% Similarity=0.225 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhcCCcccc----CCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHH
Q 008710 86 DAYLQLSVTVLAAFCRVPEIA----SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVL 161 (557)
Q Consensus 86 ~~~~~LavsvLa~F~~~pe~A----~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l 161 (557)
..-+.+++..+.-..+.++.+ .+.++ +|.++.++.. .|..+...|..+|..++ .++.|.+.+...+.+..|
T Consensus 91 ~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l---~~~i~~~L~~-~d~~Va~~A~~~L~~l~-~~~~~~~~l~~~~~~~~L 165 (503)
T PF10508_consen 91 PKVRRLALKQLGRIARHSEGAAQLLVDNEL---LPLIIQCLRD-PDLSVAKAAIKALKKLA-SHPEGLEQLFDSNLLSKL 165 (503)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCccH---HHHHHHHHcC-CcHHHHHHHHHHHHHHh-CCchhHHHHhCcchHHHH
Confidence 455778877776666655442 34444 4777777754 55677799999999998 799999999888888886
Q ss_pred HHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 162 AFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 162 ~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
..+.. ...+--.-+.++++..+.... .+. .+... .+++.+-.+...+.--.|.-++.+|..+-...
T Consensus 166 -~~l~~-~~~~~vR~Rv~el~v~i~~~S-~~~-----~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 166 -KSLMS-QSSDIVRCRVYELLVEIASHS-PEA-----AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred -HHHHh-ccCHHHHHHHHHHHHHHHhcC-HHH-----HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 33332 112222334566665554332 111 11111 15666666666644456788888888887643
No 22
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=54.38 E-value=1e+02 Score=29.34 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCC--ccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCC---hHHHHH
Q 008710 89 LQLSVTVLAAFCRV--PEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGG---MKVLAF 163 (557)
Q Consensus 89 ~~LavsvLa~F~~~--pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~---i~~l~~ 163 (557)
+-.|+.++.+.|.. +|... ..-...+..++.++.+.++..+.+-|+.+|..+- ..-.|-..+.++.+ ++++..
T Consensus 42 rw~G~~Ll~~~~~~~~~e~l~-~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~-~~~~~~p~l~Rei~tp~l~~~i~ 119 (165)
T PF08167_consen 42 RWAGLCLLKVTVEQCSWEILL-SHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF-DLIRGKPTLTREIATPNLPKFIQ 119 (165)
T ss_pred HHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HHhcCCCchHHHHhhccHHHHHH
Confidence 67899999999974 67662 2225566779999988777777888899987774 24444444443322 333333
Q ss_pred HHhhcccCcchHHHHHHHHHHHHhhc
Q 008710 164 QMSTFADGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 164 ~i~~~~~~s~~~e~Al~LL~~Ll~~~ 189 (557)
.+..+.+.+...+.++..|..++...
T Consensus 120 ~ll~l~~~~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 120 SLLQLLQDSSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHC
Confidence 33333343567788888888888876
No 23
>PTZ00429 beta-adaptin; Provisional
Probab=53.67 E-value=3.6e+02 Score=32.24 Aligned_cols=135 Identities=10% Similarity=0.138 Sum_probs=85.0
Q ss_pred cchHHHHHHHHHHHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHH
Q 008710 83 ENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLA 162 (557)
Q Consensus 83 ~~~~~~~~LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~ 162 (557)
.++.+-+.=+++++..|-.+|++..+.+++ |.|.+.+ ...+..++.-|+..|+.|....+++ .-+..+.+..++
T Consensus 152 ~~pYVRKtAalai~Kly~~~pelv~~~~~~---~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll 225 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQLFYQQDFK---KDLVELL-NDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLV 225 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcccccccchH---HHHHHHh-cCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHH
Confidence 457777778999999998888887665655 4477744 4677888999999999995222222 223455566665
Q ss_pred HHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhcc
Q 008710 163 FQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (557)
Q Consensus 163 ~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~ 234 (557)
..+.. .+.+.+. .+|.. |.+.. +.+..+...++..+...+.......-|++++.+-.+...
T Consensus 226 ~~L~e-~~EW~Qi----~IL~l-L~~y~-----P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 226 YHLPE-CNEWGQL----YILEL-LAAQR-----PSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHhhc-CChHHHH----HHHHH-HHhcC-----CCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 55433 1222222 22222 23332 223445667788887777777778888888877776654
No 24
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=52.45 E-value=1.8e+02 Score=31.72 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=65.0
Q ss_pred HHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcch
Q 008710 95 VLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRL 174 (557)
Q Consensus 95 vLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~ 174 (557)
|+--|+-.|+.++.-+--+-+..|..-+....|.-+...|++..+.++ -++-|++.+...|.|+.+|..|.-...+.|.
T Consensus 195 IieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa-eteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 195 IIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA-ETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH-HHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 455677777777432222222223222322245556688999999997 7999999999999999998877755556666
Q ss_pred HHHHHHHHHHHHhhcc
Q 008710 175 MELAIRLLQLMLSKLS 190 (557)
Q Consensus 175 ~e~Al~LL~~Ll~~~~ 190 (557)
.-.++-..+.++++.+
T Consensus 274 kfralmgfgkffgkea 289 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHHHHHhcchH
Confidence 6678888888888764
No 25
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.52 E-value=1e+02 Score=32.10 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=75.6
Q ss_pred ccHHHHHHHhccC-C---chhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHH
Q 008710 16 PSLDDCLKLLKGE-R---DEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQL 91 (557)
Q Consensus 16 ~~l~~cl~lLk~~-~---D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~L 91 (557)
..+...++.|++. + -+-..+|+-.+..+++ ....+..+|++=|.+++-++|+...... .....+-.|..+
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~~~R~~f~~~~~v~~l~~iL~~~~~~~----~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SKEYRQVFWKSNGVSPLFDILRKQATNS----NSSGIQLQYQAL 219 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SHHHHHHHHTHHHHHHHHHHHH-------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cchhHHHHHhcCcHHHHHHHHHhhcccC----CCCchhHHHHHH
Confidence 4567777787763 1 1223777777788875 5666788899999999999995321111 122345667776
Q ss_pred HHHHHHHhcC--CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHH
Q 008710 92 SVTVLAAFCR--VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVT 142 (557)
Q Consensus 92 avsvLa~F~~--~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia 142 (557)
-.-=+-+|.. .+++..+. -||.+++++..+.-|-++.-|+.+|..+.
T Consensus 220 l~lWlLSF~~~~~~~~~~~~----~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 220 LCLWLLSFEPEIAEELNKKY----LIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHTTSHHHHHHHHTTS----HHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHhccc----hHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 6666666653 33443333 68999999999888999999999998885
No 26
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=50.49 E-value=3.1e+02 Score=28.44 Aligned_cols=226 Identities=19% Similarity=0.205 Sum_probs=122.0
Q ss_pred HHHHHhccCCchhHHHHHHHHHhcCCC---CCHHHHHHHHHhcCc-------chHHHHHhcCCCCCCCCCCCCcchHHHH
Q 008710 20 DCLKLLKGERDEQRLAGLLVVTKFCKG---DDAVSLRKIYDAVGP-------RFLDRLLRTGLGKGINSGNSSENRDAYL 89 (557)
Q Consensus 20 ~cl~lLk~~~D~~kfagLlLvtkl~~~---~d~~~~~~v~~Aig~-------~FL~RLL~T~~~~~~~~~~~~~~~~~~~ 89 (557)
-|+.+|.+....+=..+|=|+.|+++. +|.+++..+.+..+. .=+--|+-.|. -...-.
T Consensus 11 ~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL-----------~Ss~t~ 79 (262)
T PF14225_consen 11 TAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGL-----------RSSSTY 79 (262)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCcc-----------CCCCcH
Confidence 367788888888888899999999887 455555555444432 23444444442 233347
Q ss_pred HHHHHHHHHhcCCcccc--CCc------chhcchhHHHHHhhccc---ccchHHHHHHHHHHHHhcCchhhhHhhhcCCh
Q 008710 90 QLSVTVLAAFCRVPEIA--SSE------DMVSKVPPILELMLKES---GTSILEECYEFLYLVTNATGDGVTTLYESGGM 158 (557)
Q Consensus 90 ~LavsvLa~F~~~pe~A--~~~------~~v~~IP~l~~~l~~~~---~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i 158 (557)
+..+.+|..+...|+-. .++ -++...|.++..+.+.. ....+.++.+.|..+| ...|... +
T Consensus 80 e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a--~~~~~~~------L 151 (262)
T PF14225_consen 80 ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA--EAQGLPN------L 151 (262)
T ss_pred HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH--HhCCCcc------H
Confidence 78899999999755443 233 24555577777765544 1112234444444443 2222222 2
Q ss_pred HHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhh
Q 008710 159 KVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSA 238 (557)
Q Consensus 159 ~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~ 238 (557)
.+ .+..+..+.|. -.-+.+...+..+ .+..-+++ -..++..+..-..+.....|-+.+++|..+++..+
T Consensus 152 a~---il~~ya~~~fr--~~~dfl~~v~~~l-~~~f~P~~---~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d-- 220 (262)
T PF14225_consen 152 AR---ILSSYAKGRFR--DKDDFLSQVVSYL-REAFFPDH---EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVD-- 220 (262)
T ss_pred HH---HHHHHHhcCCC--CHHHHHHHHHHHH-HHHhCchh---HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc--
Confidence 22 22222333331 1112222222222 11111122 12344445555555667889999999999998873
Q ss_pred hHHHHhhcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcC
Q 008710 239 LLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKG 288 (557)
Q Consensus 239 ~~~~~~~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G 288 (557)
.. ..-..++.+-|...|++- +=.+||.+....+...|
T Consensus 221 -~~--------~~~~~dlispllrlL~t~----~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 221 -MR--------SPHGADLISPLLRLLQTD----LWMEALEVLDEIVTRSG 257 (262)
T ss_pred -CC--------CCcchHHHHHHHHHhCCc----cHHHHHHHHHHHHhhcc
Confidence 10 113344555555555543 34578888888888877
No 27
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.77 E-value=2e+02 Score=31.77 Aligned_cols=125 Identities=20% Similarity=0.296 Sum_probs=83.0
Q ss_pred cHHHHHHHhccCCchhH-HHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQR-LAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~k-fagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
.+.+-+.|....+|--| .||++| ..+ +.|..-.+.|-+|=|.+.+-|||++.+++ +-++=
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lAL-rnl--asdt~Yq~eiv~ag~lP~lv~Llqs~~~p----------------lilas 312 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLAL-RNL--ASDTEYQREIVEAGSLPLLVELLQSPMGP----------------LILAS 312 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHH-hhh--cccchhhhHHHhcCCchHHHHHHhCcchh----------------HHHHH
Confidence 46666777776654444 455543 222 24666788999999999999999886542 11111
Q ss_pred HHHh---cCCcc--cc-CCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHH
Q 008710 96 LAAF---CRVPE--IA-SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAF 163 (557)
Q Consensus 96 La~F---~~~pe--~A-~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~ 163 (557)
.+|. +--|= .. .+..++ -.|+.+++..+.+.+-.-|..+|-.+|.+++....++.+.|+|+++-+
T Consensus 313 VaCIrnisihplNe~lI~dagfl---~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 313 VACIRNISIHPLNEVLIADAGFL---RPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE 383 (550)
T ss_pred HHHHhhcccccCcccceecccch---hHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence 1111 11121 11 344444 458999998887777788899998887679999999999999999644
No 28
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=48.12 E-value=3.6e+02 Score=28.49 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=43.0
Q ss_pred cHHHHHHHhc-cCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 17 SLDDCLKLLK-GERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 17 ~l~~cl~lLk-~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
-++.|++-+| |+..|+.++.-++--=.+.-+.......+|+.+.+ +|.|.++.++. ........--+++|
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~-~L~~~l~d~s~--------~~~~R~~~~~aLai 157 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP-VLKRILTDSSA--------SPKARAACLEALAI 157 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH-HHHHHHhCCcc--------chHHHHHHHHHHHH
Confidence 3677888887 45677776633222222332222234577777765 77888887621 22333444447777
Q ss_pred HHHhcC
Q 008710 96 LAAFCR 101 (557)
Q Consensus 96 La~F~~ 101 (557)
++-+|.
T Consensus 158 ~~fv~~ 163 (309)
T PF05004_consen 158 CTFVGG 163 (309)
T ss_pred HHHhhc
Confidence 777765
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.28 E-value=4.3e+02 Score=32.91 Aligned_cols=173 Identities=13% Similarity=0.143 Sum_probs=98.1
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCC---CCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKG---DDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~---~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (557)
.++--.+-.++.++..|=.|+++++++..- .+..-+ +=+.||+..+...+ ..--+..|+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~---------~~l~~lf~q~~~d~---------s~~vr~~a~ 180 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL---------DDLLRLFSQTMTDP---------SSPVRVAAV 180 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH---------HHHHHHHHHhccCC---------cchHHHHHH
Confidence 344555666788888899999888887652 111100 12346666664321 222788889
Q ss_pred HHHHHhcC-Cc-cccCCcchhcchhHHHHHhhc---ccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhh-
Q 008710 94 TVLAAFCR-VP-EIASSEDMVSKVPPILELMLK---ESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMST- 167 (557)
Q Consensus 94 svLa~F~~-~p-e~A~~~~~v~~IP~l~~~l~~---~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~- 167 (557)
.-+.+|.- .+ +-.-.+.+..-+|.++.++.. .+|......++++|.-++-+.|+=-.-.++. +|.- +-+|..
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~-~l~Ia~n 258 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQF-SLEIAKN 258 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHH-HHHHhhc
Confidence 98999985 32 333467888899999998853 3445556899999988863333322222211 1221 222221
Q ss_pred cccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHH
Q 008710 168 FADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAR 211 (557)
Q Consensus 168 ~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~ 211 (557)
..-+.-..-.|+++|.++.... ..+...++.-.+.++..+-.
T Consensus 259 ~~l~~~~R~~ALe~ivs~~e~A--p~~~k~~~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 259 KELENSIRHLALEFLVSLSEYA--PAMCKKLALLGHTLVPVLLA 300 (1075)
T ss_pred ccccHHHHHHHHHHHHHHHHhh--HHHhhhchhhhccHHHHHHH
Confidence 1111234567899998888772 23333444444455544444
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=46.75 E-value=1.9e+02 Score=29.89 Aligned_cols=96 Identities=8% Similarity=0.149 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhc
Q 008710 89 LQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTF 168 (557)
Q Consensus 89 ~~LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~ 168 (557)
+--|+.+|.-++..++. |.-+...||.|+..++.++..+ -..++.+|..++ ..|.=.+.++..+++..+ -.++.-
T Consensus 112 Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~-k~~vLk~L~nLS-~np~~~~~Ll~~q~~~~~-~~Lf~~ 186 (254)
T PF04826_consen 112 QLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKT-KVQVLKVLVNLS-ENPDMTRELLSAQVLSSF-LSLFNS 186 (254)
T ss_pred HHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHH-HHHHHHHHHHhc-cCHHHHHHHHhccchhHH-HHHHcc
Confidence 34578888888765544 6778889999999998876554 478899999997 688888899988888875 445431
Q ss_pred ccCcchHHHHHHHHHHHHhhc
Q 008710 169 ADGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 169 ~~~s~~~e~Al~LL~~Ll~~~ 189 (557)
....--...++.+...+-...
T Consensus 187 ~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 187 SESKENLLRVLTFFENINENI 207 (254)
T ss_pred CCccHHHHHHHHHHHHHHHhh
Confidence 111112344555555554444
No 31
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=43.97 E-value=1.5e+02 Score=30.78 Aligned_cols=101 Identities=19% Similarity=0.322 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhcC-Ccc---ccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHH
Q 008710 86 DAYLQLSVTVLAAFCR-VPE---IASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVL 161 (557)
Q Consensus 86 ~~~~~LavsvLa~F~~-~pe---~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l 161 (557)
..-..+|+.||-..|- .|. ++.+.... -.|++.+....+..+..-|+.+|.++..-++.-.+.|-+.+++..+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m---~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNM---ELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTV 181 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhH---HHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHH
Confidence 3346779999999995 554 33333333 4477888655555666779999988866899999999999999998
Q ss_pred HHHHhhcccCcchHHHHHHHHHHHHhhcccc
Q 008710 162 AFQMSTFADGSRLMELAIRLLQLMLSKLSLE 192 (557)
Q Consensus 162 ~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~ 192 (557)
+..++ +.+...+.-++++.+|+-...++
T Consensus 182 ~~llk---~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 182 CSLLK---SKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HHHHc---cccccHHHhHHHHHHHHHHHccc
Confidence 55443 55567778888888888777544
No 32
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=43.58 E-value=1.5e+02 Score=33.34 Aligned_cols=120 Identities=13% Similarity=0.218 Sum_probs=73.3
Q ss_pred hhHHHHHhhcccccchHHHHHHHHHHHHh-cC--------chhh----hHhhhcCChHHHHHHHhhcccCcchHHHHHHH
Q 008710 115 VPPILELMLKESGTSILEECYEFLYLVTN-AT--------GDGV----TTLYESGGMKVLAFQMSTFADGSRLMELAIRL 181 (557)
Q Consensus 115 IP~l~~~l~~~~~~~~~~~~~~~L~~ia~-a~--------~~G~----~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~L 181 (557)
||.|++.+....+...-.-+.++|.+|-. +. ..|+ +.|.+...|.+|+..|.. ..++...--++.+
T Consensus 64 I~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~-~~~~s~lvn~v~I 142 (475)
T PF04499_consen 64 IPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLN-SQGGSSLVNGVSI 142 (475)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhc-CCCcchHHHHHHH
Confidence 45588888754443344555666655521 11 1133 344566788888777763 2456778889999
Q ss_pred HHHHHhhcccccc------------cccChhhHHHHHHHHHHHHhhhc-----------------------chhhHHHHH
Q 008710 182 LQLMLSKLSLEII------------TNDYLSELSTIVTVVAREFAVLH-----------------------NALKFESLH 226 (557)
Q Consensus 182 L~~Ll~~~~~~~~------------~~~~~~~l~~lv~~la~~F~~~~-----------------------~~~Kfe~~~ 226 (557)
+..|+.+-+.+.. ...++..+..++..++..+..-+ +-.||.+|+
T Consensus 143 lieLIRknnsdy~~~~~~~~~~~~p~~rdpi~l~~lL~~~~~~l~~f~~lL~~~~~~~~l~Tt~G~l~~PLG~~RlkI~E 222 (475)
T PF04499_consen 143 LIELIRKNNSDYDEQLYTTIESHPPSERDPIYLGTLLKAFSPRLPDFHKLLLNPPKKPPLETTFGVLIPPLGFERLKICE 222 (475)
T ss_pred HHHHHHhcccccchhhccccccCCCCccchhhHHHHHHHHHHhHHHHHHHHhchhhccccccCCCCCCCCcchHHHHHHH
Confidence 9999966543322 11244455566666664322111 467899999
Q ss_pred HHHHhhccc
Q 008710 227 LLTAVLSSN 235 (557)
Q Consensus 227 ~L~~lL~~~ 235 (557)
+++.+|...
T Consensus 223 LiAeLLhcs 231 (475)
T PF04499_consen 223 LIAELLHCS 231 (475)
T ss_pred HHHHHHhCC
Confidence 999999775
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=43.45 E-value=1.4e+02 Score=33.69 Aligned_cols=197 Identities=17% Similarity=0.210 Sum_probs=114.6
Q ss_pred CccHHHHHHHhcc-CCchhHHHHHHHHHhcCCCC-----CHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHH
Q 008710 15 SPSLDDCLKLLKG-ERDEQRLAGLLVVTKFCKGD-----DAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAY 88 (557)
Q Consensus 15 ~~~l~~cl~lLk~-~~D~~kfagLlLvtkl~~~~-----d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~ 88 (557)
+..++..+.+++. ++++.|==.+.+.+..++-. --++.+.+|. ||+|++|++.=-.+ ++-+...+
T Consensus 264 ~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~--~p~~l~~~~sw~~S-------~d~~l~t~ 334 (604)
T KOG4500|consen 264 NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHA--DPQFLDFLESWFRS-------DDSNLITM 334 (604)
T ss_pred cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhc--CcHHHHHHHHHhcC-------CchhHHHH
Confidence 5577888899997 78888888888888777641 1235667775 88899999865311 12233344
Q ss_pred HHHHHHHHHHhcCCcccc---CCcchhcchhHHHHHhhcc----cccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHH
Q 008710 89 LQLSVTVLAAFCRVPEIA---SSEDMVSKVPPILELMLKE----SGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVL 161 (557)
Q Consensus 89 ~~LavsvLa~F~~~pe~A---~~~~~v~~IP~l~~~l~~~----~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l 161 (557)
-+| -+.-|.|-.+.. -+.+++++ |.+++.+. ++.+...-|+..|-.++. -....-+++..|+..++
T Consensus 335 g~L---aigNfaR~D~~ci~~v~~~~~nk---L~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvteaI 407 (604)
T KOG4500|consen 335 GSL---AIGNFARRDDICIQLVQKDFLNK---LISCLMQEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVTEAI 407 (604)
T ss_pred HHH---HHHhhhccchHHHHHHHHHHHHH---HHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchHHHH
Confidence 444 457888866665 37777777 88888652 235556667777766643 23445567788988887
Q ss_pred HHHHhhcccCcchHHHHHHHHHHHHhhc-ccccc---cccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 162 AFQMSTFADGSRLMELAIRLLQLMLSKL-SLEII---TNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 162 ~~~i~~~~~~s~~~e~Al~LL~~Ll~~~-~~~~~---~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
.-+... ++...-.++|.++=-.. +.+.. ..+++.-+..++. -++ +.+++..--|..+.|..+....
T Consensus 408 L~~lk~-----~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~-Wsk--s~D~aGv~gESnRll~~lIkHs 477 (604)
T KOG4500|consen 408 LLQLKL-----ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD-WSK--SPDFAGVAGESNRLLLGLIKHS 477 (604)
T ss_pred HHHHHh-----cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH-hhh--CCccchhhhhhhHHHHHHHHhh
Confidence 666542 23334455555432111 01100 0123333333221 111 2334455667777777777554
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.27 E-value=5.6e+02 Score=29.37 Aligned_cols=147 Identities=14% Similarity=0.237 Sum_probs=90.3
Q ss_pred CccHHHHHHHhcc-CCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCC-----------CCCCCCCC-
Q 008710 15 SPSLDDCLKLLKG-ERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLG-----------KGINSGNS- 81 (557)
Q Consensus 15 ~~~l~~cl~lLk~-~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~-----------~~~~~~~~- 81 (557)
.-.+.+.+..|+. .+.+-+|-+---+|++..+....+ +.+-++=-..-+-+||.++.. +..+-+|.
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 3467888889974 568888888888898887633222 112222222225566665421 10000000
Q ss_pred ------------------CcchHHHHHHHHHHHHHhcCCccccCC-cchhcchhHHHHHhhcccccchHHHHHHHHHHHH
Q 008710 82 ------------------SENRDAYLQLSVTVLAAFCRVPEIASS-EDMVSKVPPILELMLKESGTSILEECYEFLYLVT 142 (557)
Q Consensus 82 ------------------~~~~~~~~~LavsvLa~F~~~pe~A~~-~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia 142 (557)
...+-.++.=++-.|+-||+-.+=+.+ ..+-.-+|.|+..+ ++.|+.+..|++-.|.-++
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 001235777788899999986653322 23444456666555 4567777799999997664
Q ss_pred hcCchhhhHhhhcCChHHHHH
Q 008710 143 NATGDGVTTLYESGGMKVLAF 163 (557)
Q Consensus 143 ~a~~~G~~~l~~~g~i~~l~~ 163 (557)
-.+.+.-+.+++.|+++++..
T Consensus 266 dg~ne~iq~vi~~gvv~~LV~ 286 (514)
T KOG0166|consen 266 DGSNEKIQMVIDAGVVPRLVD 286 (514)
T ss_pred cCChHHHHHHHHccchHHHHH
Confidence 367888899999999999744
No 35
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.27 E-value=2e+02 Score=31.47 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=79.1
Q ss_pred HHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCccccCCcchhcch------hHHHHHhh-ccc
Q 008710 54 KIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKV------PPILELML-KES 126 (557)
Q Consensus 54 ~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~~pe~A~~~~~v~~I------P~l~~~l~-~~~ 126 (557)
.|-|+=|.+-|-|++-. ++-+-++.|+=++|+.+. .+|.++++-+.| |.+...+. .++
T Consensus 278 ~I~e~GGl~tl~~~i~d------------~n~~~~r~l~k~~lslLr---alAG~DsvKs~IV~~gg~~~ii~l~~~h~~ 342 (461)
T KOG4199|consen 278 SIAESGGLDTLLRCIDD------------SNEQGNRTLAKTCLSLLR---ALAGSDSVKSTIVEKGGLDKIITLALRHSD 342 (461)
T ss_pred HHHHccCHHHHHHHHhh------------hchhhHHHHHHHHHHHHH---HHhCCCchHHHHHHhcChHHHHHHHHHcCC
Confidence 45556676666666654 233444555554444433 244455554444 56666654 566
Q ss_pred ccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhc
Q 008710 127 GTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 127 ~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~ 189 (557)
++-++++.+-|++-++--+|+-...+++.|+-.....+|+..|....-...|-.++-+++.+.
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 788889999999888667889999999988777767888765554444556777777777775
No 36
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=41.33 E-value=54 Score=22.66 Aligned_cols=38 Identities=29% Similarity=0.273 Sum_probs=30.3
Q ss_pred hhhhhhhccCChHHHHHHHHHHhcCCCccccCchHHHHHHHHHHHHH
Q 008710 475 EGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLL 521 (557)
Q Consensus 475 ~gr~il~~~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~ 521 (557)
+.++.+...|+.+.|++++. . .+......+|++|.|+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~----~-----~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLK----S-----EDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHc----C-----CCHHHHHHHHHHHHHHc
Confidence 47788889999999888764 1 24578889999999985
No 37
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=41.22 E-value=2e+02 Score=27.97 Aligned_cols=195 Identities=15% Similarity=0.160 Sum_probs=87.9
Q ss_pred HHHHHHHh--c--cCCchhHHHHHHHHHhcCCCC-CHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHH
Q 008710 18 LDDCLKLL--K--GERDEQRLAGLLVVTKFCKGD-DAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLS 92 (557)
Q Consensus 18 l~~cl~lL--k--~~~D~~kfagLlLvtkl~~~~-d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~La 92 (557)
+++....| + ..+=+.|.-||--+.++++++ ..+....+++.+. +++.-+...-. ..+..-..-|
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~-~~~~~i~~~l~----------d~Rs~v~~~A 73 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR-QLLDAIIKQLS----------DLRSKVSKTA 73 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH----HHHHH-S-----------HH---HHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-HhHHHHHHHHh----------hhHHHHHHHH
Confidence 34445555 2 335567799999999999876 2333344444443 33333333220 1122234455
Q ss_pred HHHHHHhcC-CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccC
Q 008710 93 VTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (557)
Q Consensus 93 vsvLa~F~~-~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~ 171 (557)
+.++..++. ...- -+|.+-.-+|.|++.+.... ..+...|.+||..+....+-+.+.+. .. ...... ...
T Consensus 74 ~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~-----~~-l~~~~~-~Kn 144 (228)
T PF12348_consen 74 CQLLSDLARQLGSH-FEPYADILLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILL-----EI-LSQGLK-SKN 144 (228)
T ss_dssp HHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHH-----HH-HHHHTT--S-
T ss_pred HHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHH-----HH-HHHHHh-CCC
Confidence 555655553 1111 23444445566766665433 34568888889888532221233211 11 222221 233
Q ss_pred cchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhh
Q 008710 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVL 232 (557)
Q Consensus 172 s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL 232 (557)
......+++.|..++...+.+.-.-.+...+..+++.+.+-......+.+-.+-..+..|.
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3455788888888888875111111233335666777766555555555544444444443
No 38
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=40.44 E-value=3e+02 Score=30.04 Aligned_cols=169 Identities=15% Similarity=0.166 Sum_probs=99.7
Q ss_pred HHHhhhhhhHHHHHhcchhhhhhhhc--cc-CCCcch--hhhh-hhhhhhhhhHHHHHHHHHHHhhhc-cccCCCCChhH
Q 008710 311 LLLVLESSRVEIAVLLNELAYLKYEA--SK-NTSSTA--ESFF-SKQRNVAIAFSLVEKIIRLISNIA-ESEGGLIDDNT 383 (557)
Q Consensus 311 ~lLll~la~VEVr~~Lee~~~~~~~~--~~-~~~~~~--e~i~-~~~~~L~~Cf~ilE~~I~~l~~~~-e~~~~~l~~~~ 383 (557)
+=.++++...||...+++.....++. ++ ...... ..|. .++.+|=..+..+-+.|.+ .... +.--+.++..
T Consensus 28 ~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~l~~~~~~-~~~~~~~lrnl~D~s- 105 (379)
T PF06025_consen 28 LDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKFLSHAMQH-SGGFGDRLRNLIDSS- 105 (379)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhcc-CCCcccccccccchh-
Confidence 66889999999999999421111111 11 110010 1121 2345666777777777763 2110 0000112211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcccCchh-HHHHHHHHHHhhcCchhhHHHHH-hhhhhhhhccc-cCCCCCchhH
Q 008710 384 FMKVMNGLNETIGVVLEYLQDAKEHERKKGNDL-LASVRLVGSYLAETPHACKEKVR-ELLQHMLSIEG-EDEPSPFYSV 460 (557)
Q Consensus 384 ~~q~~~~L~Ea~~~VL~~L~~~~~~~~~~~~~v-~AsvRvLgawLAEe~sal~~~v~-~LLPfll~~~~-~~~~~~~d~l 460 (557)
.|-.++..|++ +....|+-+ -.++-+++.|+-.||+++.--.. +|.+.++.-.. ++-....+++
T Consensus 106 ------~L~~sL~~Il~-------n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l 172 (379)
T PF06025_consen 106 ------SLLSSLKHILE-------NPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVL 172 (379)
T ss_pred ------hHHHHHHHHHh-------CccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHH
Confidence 22222223332 444456665 66789999999999999875544 67776776665 5545556777
Q ss_pred HHHhhhhccccccchhhhhhhccCChHHHHHHHH
Q 008710 461 FFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLI 494 (557)
Q Consensus 461 rfLLP~Lc~lT~e~~gr~il~~~~~~~~L~~~l~ 494 (557)
.-+-.+|.-+.-+..|.+.+.+.+...-+++.|.
T Consensus 173 ~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~ 206 (379)
T PF06025_consen 173 TSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFT 206 (379)
T ss_pred HHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhC
Confidence 7766666666669999999999877777666654
No 39
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=37.83 E-value=52 Score=27.68 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=36.0
Q ss_pred chhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcC
Q 008710 114 KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESG 156 (557)
Q Consensus 114 ~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g 156 (557)
-||.++++..+++-.++-.-|+-+|..|+ .+++|++.|-+.|
T Consensus 29 iv~~iv~~a~~s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g 70 (73)
T PF14668_consen 29 IVEDIVKIAENSPVLSIRGTCFYVLGLIS-STEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 45778888888777888899999999998 7999999998876
No 40
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=37.83 E-value=2.5e+02 Score=31.26 Aligned_cols=43 Identities=9% Similarity=0.068 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhh
Q 008710 125 ESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMST 167 (557)
Q Consensus 125 ~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~ 167 (557)
..+..++.+|+.||..+.--++..++.+.+.|....++..+..
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~ 85 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKN 85 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHc
Confidence 3456667999999977755789999999999999998777764
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.29 E-value=4.1e+02 Score=28.88 Aligned_cols=142 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHH
Q 008710 131 LEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVA 210 (557)
Q Consensus 131 ~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la 210 (557)
-.+|++-|--.+ -.=+-+.-|+..|+...+...+. ...+--.+.|..++.+.+..=...+........+..++..++
T Consensus 100 ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 100 KEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 366777664443 34466667787777776655332 233445788999999888874222221111223444444444
Q ss_pred HHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhHHHHHHHHHHHhcC-CChhhhhhHHHHHHHHHhhc
Q 008710 211 REFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNR-VAPAEKLQALILAESIVSIK 287 (557)
Q Consensus 211 ~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~ll~l~ 287 (557)
..+.+..|-.++..+++++... + |...... +-..| .+|+++|+++ ...+-+-.++-|.+.+++.-
T Consensus 177 ---~~~~~~~r~kaL~AissLIRn~-~-~g~~~fl--~~~G~-----~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 177 ---SDDPNTVRTKALFAISSLIRNN-K-PGQDEFL--KLNGY-----QVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred ---cCCCchHHHHHHHHHHHHHhcC-c-HHHHHHH--hcCCH-----HHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 3445677789999999999887 2 2222111 33447 8899999997 66666666777776666543
No 42
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.17 E-value=1.1e+02 Score=27.28 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--CchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccc
Q 008710 378 LIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKK--GNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEG 450 (557)
Q Consensus 378 ~l~~~~~~q~~~~L~Ea~~~VL~~L~~~~~~~~~~--~~~v~AsvRvLgawLAEe~sal~~~v~~LLPfll~~~~ 450 (557)
.++.+...++...+.+.+..|++++.++-+..... ...+-++.+++++|+.--+...--. .+++++++.+-+
T Consensus 63 ~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~ 136 (148)
T PF08389_consen 63 SLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQ 136 (148)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcC
Confidence 37778889999999999999999999865444332 3357899999999999555443332 357787777764
No 43
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=3.2e+02 Score=29.89 Aligned_cols=136 Identities=18% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCchhHHHHHH-HHHHhhcCchhhHHHHHhhhhhhhhcccc---C
Q 008710 377 GLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRL-VGSYLAETPHACKEKVRELLQHMLSIEGE---D 452 (557)
Q Consensus 377 ~~l~~~~~~q~~~~L~Ea~~~VL~~L~~~~~~~~~~~~~v~AsvRv-LgawLAEe~sal~~~v~~LLPfll~~~~~---~ 452 (557)
+++-..=+..+.+.|+=||+--+-.+|..++--|+.++.++-.... .|+-.=|-+.++ -..|.+-++...+ |
T Consensus 186 gp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLsvsL----~RvLEm~it~~Peifld 261 (489)
T KOG4692|consen 186 GPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELSVSL----ARVLEMCITAMPEIFLD 261 (489)
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHHHHH----HHHHHHHHHhhhHHHhc
Confidence 4477777789999999999988888887766554433221111110 122222222222 2334444444332 3
Q ss_pred CCCCchhHHHHhhhhccccccchhhhhhhccCChHHHHHHHHHHhcCCCccccCchHHHHHHHHHHHHHhh
Q 008710 453 EPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLK 523 (557)
Q Consensus 453 ~~~~~d~lrfLLP~Lc~lT~e~~gr~il~~~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~ 523 (557)
+.+| -.+.||--+||+-- +++-.-..+-.+.++...+.++.-+.+..-+-+..+-||++|+++-
T Consensus 262 ~trp--ns~~Ll~ri~qlln-----qvlsrVt~e~~lf~rvv~~~~~~le~V~hypil~a~~GIll~Ll~~ 325 (489)
T KOG4692|consen 262 GTRP--NSRRLLERILQLLN-----QVLSRVTDEFFLFVRVVRRQGQPLEKVSHYPILAALVGILLNLLEA 325 (489)
T ss_pred CCCC--cHHHHHHHHHHHHH-----HHHHhhccccchhHHHHHhhcCChhhhcccchHHHHHHHHHHHHHh
Confidence 3333 12222222232210 1111112222344555555555544344447778889999999997
No 44
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.57 E-value=97 Score=33.27 Aligned_cols=81 Identities=26% Similarity=0.231 Sum_probs=61.1
Q ss_pred HhhhhhhhhccccCCC-CCc-hhHHHHhhhhccccccchhhhhhhccCChHHHHHHHHHHhcCCCccccCchHHHHHHHH
Q 008710 439 RELLQHMLSIEGEDEP-SPF-YSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDT 516 (557)
Q Consensus 439 ~~LLPfll~~~~~~~~-~~~-d~lrfLLP~Lc~lT~e~~gr~il~~~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~i 516 (557)
-..||-=++|-.+|.. .|- |...-+|=++.+++++..||++|-+-|++..+.++-. .+.+.-+-.+|.-
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk---------~e~ded~~~ace~ 308 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHK---------WEEDEDIREACEQ 308 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhc---------CCCcHHHHHHHHH
Confidence 3455555577665433 343 5666789999999999999999999999999888531 1245778899999
Q ss_pred HHHHHhhcccccc
Q 008710 517 ILNLLLKVKEQVR 529 (557)
Q Consensus 517 llNl~v~~~~~~~ 529 (557)
+.|.+++ .+|..
T Consensus 309 vvq~Lv~-~e~~~ 320 (353)
T KOG2973|consen 309 VVQMLVR-LEPEI 320 (353)
T ss_pred HHHHHHh-ccccc
Confidence 9999999 55543
No 45
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.89 E-value=2.2e+02 Score=31.16 Aligned_cols=76 Identities=11% Similarity=0.270 Sum_probs=56.6
Q ss_pred cchhHHHHHhhcccc---cchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhc
Q 008710 113 SKVPPILELMLKESG---TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 113 ~~IP~l~~~l~~~~~---~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~ 189 (557)
+-+..+++++..+.+ .+.+..|+..|.++| .+..-...+++.|+.+.+...+....+...-.++++.++..|-=|.
T Consensus 283 GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 283 GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRS 361 (461)
T ss_pred cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcC
Confidence 456778888877655 556789999999997 6788888889999999976555554455555678888877766554
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=31.43 E-value=6.9e+02 Score=27.94 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=72.2
Q ss_pred HHhccC-CchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC
Q 008710 23 KLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR 101 (557)
Q Consensus 23 ~lLk~~-~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~ 101 (557)
..|++. +.....+|+-.+..+++.+. .+...|++=|.++|-++|++... .-+-.|..+-+-=+-+|..
T Consensus 150 ~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~v~~L~~~L~~~~~---------~~Ql~Y~~ll~lWlLSF~~ 218 (429)
T cd00256 150 EQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADGVPTLVKLLSNATL---------GFQLQYQSIFCIWLLTFNP 218 (429)
T ss_pred HHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccCHHHHHHHHhhccc---------cHHHHHHHHHHHHHHhccH
Confidence 344433 24444555556666666422 23456678899999999997531 2366788888888888875
Q ss_pred CccccC-CcchhcchhHHHHHhhcccccchHHHHHHHHHHHH
Q 008710 102 VPEIAS-SEDMVSKVPPILELMLKESGTSILEECYEFLYLVT 142 (557)
Q Consensus 102 ~pe~A~-~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia 142 (557)
. .+. ..+ -+-||.+++++..+.-|-++.-|+.+|..+.
T Consensus 219 ~--~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 219 H--AAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred H--HHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 3 221 111 4578999999999888999999999998875
No 47
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=30.62 E-value=1.7e+02 Score=29.50 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCC-CCCCcchHHHHHHHHHHHHHhcC-CccccCCcchh
Q 008710 35 AGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINS-GNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMV 112 (557)
Q Consensus 35 agLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~-~~~~~~~~~~~~LavsvLa~F~~-~pe~A~~~~~v 112 (557)
+++=+++++.+.+|. .|.||..+|.-...+...+ .+++...+...+.|-+ .+.+|+ +|+ .-++|+
T Consensus 57 ~~~rLl~~lw~~~~r----------~f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s-~~~ic~~~p~--~g~~ll 123 (234)
T PF12530_consen 57 VALRLLTLLWKANDR----------HFPFLQPLLLLLILRIPSSFSSKDEFWECLISIAAS-IRDICCSRPD--HGVDLL 123 (234)
T ss_pred HHHHHHHHHHHhCch----------HHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHH-HHHHHHhChh--hHHHHH
Confidence 555555555554332 1267776665410000000 0233455556666644 456665 998 445555
Q ss_pred cchhHHHHHhhcccccchHHHHHHHHHHHH
Q 008710 113 SKVPPILELMLKESGTSILEECYEFLYLVT 142 (557)
Q Consensus 113 ~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia 142 (557)
+.+.+++.+.+++.+...++|.|..++
T Consensus 124 ---~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 124 ---PLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred ---HHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 445555535566777788899888886
No 48
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=30.04 E-value=2.2e+02 Score=29.36 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=72.7
Q ss_pred hhcccCchhHHHHHHHHHHhhcCchhhHHHHH-----------hhhhhhhhccccCCCCCchhHHHHh----hhhc--cc
Q 008710 408 HERKKGNDLLASVRLVGSYLAETPHACKEKVR-----------ELLQHMLSIEGEDEPSPFYSVFFLL----PMLC--QT 470 (557)
Q Consensus 408 ~~~~~~~~v~AsvRvLgawLAEe~sal~~~v~-----------~LLPfll~~~~~~~~~~~d~lrfLL----P~Lc--~l 470 (557)
..|.+||+-+++.|=|-.||-.+....+ .|. .|+|.++++.+++ .--...++.|. |..+ .-
T Consensus 3 ~~Y~~g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~~iv~~DLiPiL~~~~~~~-~l~~~~l~LLV~LT~P~~~~~~~ 80 (266)
T PF04821_consen 3 GVYVKGDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEWNIVQKDLIPILISYKDDD-KLFLACLRLLVNLTWPIELLVES 80 (266)
T ss_pred CceecCHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHhchhhhhHHHHHHhccCch-HHHHHHHHHHHHhCCCHHHhccC
Confidence 4566677777777777777777766653 222 6789999998731 11123455543 3333 11
Q ss_pred c-ccchhh--------------hhhhccCChHHHHHHHHHHhcCC--CccccCchHHHHHHHHHHHHHhhcccccc
Q 008710 471 T-MEIEGC--------------KDLVSSGMYKAVAECLIKLIGPG--RVTVEDDGCIFLACDTILNLLLKVKEQVR 529 (557)
Q Consensus 471 T-~e~~gr--------------~il~~~~~~~~L~~~l~~~~~~~--~~~~~~~~~l~~aC~illNl~v~~~~~~~ 529 (557)
. .+..++ ++|++.+..+++++.+....+.. ..+.++...|..+-..|-|++.. .++..
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~I-p~~~~ 155 (266)
T PF04821_consen 81 QPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAI-PDPPS 155 (266)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcC-CCCcc
Confidence 1 222233 66777777777777776654322 22355568899999999999998 44443
No 49
>PF02262 Cbl_N: CBL proto-oncogene N-terminal domain 1; InterPro: IPR003153 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the N-terminal four-helical bundle domain.; GO: 0004871 signal transducer activity, 0007166 cell surface receptor linked signaling pathway, 0005634 nucleus; PDB: 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B 1B47_C 3BUO_D ....
Probab=26.86 E-value=3.3e+02 Score=25.58 Aligned_cols=99 Identities=21% Similarity=0.275 Sum_probs=54.2
Q ss_pred HHHhcCCcccc--CCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 96 LAAFCRVPEIA--SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 96 La~F~~~pe~A--~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
+...|.+|.+. .+| |.|.+++ -|.||.|..|++ ..+|....... .+-+ +|+. .+-..
T Consensus 20 l~~lC~~prLnLknSP------P~l~diL---------pdt~q~L~~I~~-~~~~~~~~l~~--~~yl--~i~l-~NL~~ 78 (130)
T PF02262_consen 20 LVKLCQDPRLNLKNSP------PYLLDIL---------PDTYQHLRLIFS-RYEDDMEPLGE--NDYL--RIFL-ANLEA 78 (130)
T ss_dssp HHHHHT-GGG--TSSS------S-HHHHH---------HHHHHHHHHHHH-HCTSCHHHHHH--HHHH--HHHH-HHHHH
T ss_pred HHHHhCCCcccCCCCC------CcHHHhh---------HHHHHHHHHHHH-Hcccccccccc--chHH--HHHH-HHHHH
Confidence 45678877776 344 6666666 577999999973 44443222211 1111 1221 11111
Q ss_pred hHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhh
Q 008710 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALK 221 (557)
Q Consensus 174 ~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~K 221 (557)
-..++.+|+ +-+.+.+- ...+...+=++++|.-|...+.+.|
T Consensus 79 K~kq~~~Lf-----K~~~e~~f-~e~S~~RR~LtKLsLiFSHMlaELk 120 (130)
T PF02262_consen 79 KCKQAAKLF-----KEAKEKMF-DEGSRYRRQLTKLSLIFSHMLAELK 120 (130)
T ss_dssp HHHHHHHHH-----HHHGGGGG-STTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HhCHHHHH-hhchHHHHHHHHHHHHHHHHHHHHH
Confidence 234566665 44456665 4455677778999999998877655
No 50
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.82 E-value=1e+03 Score=27.38 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=100.3
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 008710 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (557)
Q Consensus 18 l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (557)
++.-+..+.+.+-.+++-+..-.+|++-.+.-.-+..+-.+ | -++||..--.. +.++..-..-|-++..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G--~v~~lV~~l~~--------~~~~~lq~eAAWaLTn 136 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-G--VVPRLVEFLSR--------DDNPTLQFEAAWALTN 136 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-C--cHHHHHHHHcc--------CCChhHHHHHHHHHHH
Confidence 44555555555555577777777777665432223322222 2 33333332210 1122222222222222
Q ss_pred HhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHH
Q 008710 98 AFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMEL 177 (557)
Q Consensus 98 ~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~ 177 (557)
--+-..|.....-=-+.+|+|+..+.+.++ .+-+.|.-.|-.||-=++.=+..++..|++..|+..+.. .+ ...
T Consensus 137 IAsgtse~T~~vv~agavp~fi~Ll~s~~~-~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~-~~-~~~--- 210 (514)
T KOG0166|consen 137 IASGTSEQTKVVVDAGAVPIFIQLLSSPSA-DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK-SD-KLS--- 210 (514)
T ss_pred HhcCchhhccccccCCchHHHHHHhcCCcH-HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc-cc-chH---
Confidence 222233332222223567999998876554 445778888888864556677788899999998776643 22 111
Q ss_pred HHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhh
Q 008710 178 AIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVL 232 (557)
Q Consensus 178 Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL 232 (557)
=++-+.-.|+.+-..+-.+.+...+..+++.|.+.......+..-++|-.++.+-
T Consensus 211 ~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 211 MLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 1111222222221111122333456677777777666555566666666666555
No 51
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=26.10 E-value=7.9e+02 Score=25.90 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=60.4
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCC-HHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDD-AVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d-~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
.|.+|+..|..|+-..|-.||--+.+++...- .+-+..-+ ..+++.+++.-. ++ . . .-..||..+
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~----~tL~~~~~k~lk-kg-----~---~-~E~~lA~~~ 109 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRR----ETLLDALLKSLK-KG-----K---S-EEQALAARA 109 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHH----HHHHHHHHHHhc-cC-----C---H-HHHHHHHHH
Confidence 37899999999999999999988888876532 12121111 124455555431 11 1 1 124577777
Q ss_pred HHHhcC-CccccCCcchhcc-hhHHHHHhhcccccchH-HHHHHHH
Q 008710 96 LAAFCR-VPEIASSEDMVSK-VPPILELMLKESGTSIL-EECYEFL 138 (557)
Q Consensus 96 La~F~~-~pe~A~~~~~v~~-IP~l~~~l~~~~~~~~~-~~~~~~L 138 (557)
++-+|- ...-...+++... .|.|..++..++....+ .-|+.||
T Consensus 110 l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aL 155 (309)
T PF05004_consen 110 LALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEAL 155 (309)
T ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 777763 3311212344444 47777777655443223 4555565
No 52
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=25.88 E-value=1.2e+02 Score=26.37 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=47.5
Q ss_pred ccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 16 PSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 16 ~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
..+++++..|....=-=|=-||.++++++...+ ...+....+-.++.+.. .+.++-+|++ |+-.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-------~~~~~~~~il~l~l~~L--------~d~DsyVYL~-aI~~ 66 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-------EPVIDIPKILDLFLSQL--------KDEDSYVYLN-AIKG 66 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-------cchhhHHHHHHHHHHHc--------CCCCchHHHH-HHHH
Confidence 467888888877655568889999999999877 22222233334444432 2346788876 5677
Q ss_pred HHHhcC-Ccc
Q 008710 96 LAAFCR-VPE 104 (557)
Q Consensus 96 La~F~~-~pe 104 (557)
|++++. .|+
T Consensus 67 L~~La~~~p~ 76 (92)
T PF10363_consen 67 LAALADRHPD 76 (92)
T ss_pred HHHHHHHChH
Confidence 777774 443
No 53
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=25.80 E-value=6.1e+02 Score=29.56 Aligned_cols=134 Identities=14% Similarity=0.130 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcC----------Ch
Q 008710 89 LQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESG----------GM 158 (557)
Q Consensus 89 ~~LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g----------~i 158 (557)
+-+|+-=|+.|++||.+|..===.+.+-+|...+...++-+.-..-..||.+++ .+.+.| .|
T Consensus 100 ~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~--------elmehgvvsW~~~~~~fV 171 (713)
T KOG2999|consen 100 KMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFS--------ELMEHGVVSWESVSNDFV 171 (713)
T ss_pred HHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHH--------HHHhhceeeeeecccHHH
Confidence 334888899999999998422222345556666655444222233334455543 223333 33
Q ss_pred HHHHHHHhhcccCcchHHHHHHHHHHHHhhcc-cccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 159 KVLAFQMSTFADGSRLMELAIRLLQLMLSKLS-LEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 159 ~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~-~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
..+++-+.......+-...|+++|..++-... ..+|..++. -+..|.+............+.+++++++..+
T Consensus 172 ~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev-----~i~~li~hlq~~n~~i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 172 VSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEV-----PIETLIRHLQVSNQRIQTCAIALLNALFRKA 244 (713)
T ss_pred HHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcC-----cHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence 44445443223445667899999998877653 122322221 2344555555555566666888899998777
No 54
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=25.73 E-value=8.9e+02 Score=26.35 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHH-HHHHhcCchhhhHhhhcCChHHHHHHHhhcccCc
Q 008710 94 TVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFL-YLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS 172 (557)
Q Consensus 94 svLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L-~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s 172 (557)
.+..-|++.|++-.+-.+-.-++-+...+...+ ..+..-+|.++ +++ ..++.-+.+.+.+.--=+.--+..-....
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i--~d~~~l~~~~~l~id~~ii~SL~~~~~~~ 82 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLI--SDEESLQILLKLHIDIFIIRSLDRDNKND 82 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHH--cCHHHHHHHHHcCCchhhHhhhcccCCCh
Q ss_pred chHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccch
Q 008710 173 RLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKW 252 (557)
Q Consensus 173 ~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W 252 (557)
...++|+++.-.++...+..+.- +..+...+.++|.+ ..|..|.-+++.|..+.-.. |.-+-.+
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~---~~D~lr~~cletL~El~l~~-P~lv~~~--------- 146 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEH---EDDRLRRICLETLCELALLN-PELVAEC--------- 146 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhC---CchHHHHHHHHHHHHHHhhC-HHHHHHc---------
Q ss_pred hHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 008710 253 SMYMRVGVVAILQNRVAPAEKLQALILAESIVSIK 287 (557)
Q Consensus 253 ~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~ 287 (557)
.|++.++++=+..... .+=.++..++.++
T Consensus 147 -----gG~~~L~~~l~d~~~~-~~~~l~~~lL~lL 175 (371)
T PF14664_consen 147 -----GGIRVLLRALIDGSFS-ISESLLDTLLYLL 175 (371)
T ss_pred -----CCHHHHHHHHHhccHh-HHHHHHHHHHHHh
No 55
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=25.11 E-value=1.1e+02 Score=28.74 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHHHHhcCchhhhHhhh-cCChHHHHHHHhhcccCcchHHHHHHHHHHH
Q 008710 128 TSILEECYEFLYLVTNATGDGVTTLYE-SGGMKVLAFQMSTFADGSRLMELAIRLLQLM 185 (557)
Q Consensus 128 ~~~~~~~~~~L~~ia~a~~~G~~~l~~-~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~L 185 (557)
.....+|+.||-++. .++.|.+.+++ .+.+..++.-+. .....-...+++||..+
T Consensus 130 ~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 130 IDIEHECLRCLKALM-NTKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
Confidence 355688999999997 79999999996 777887754443 34344566777777654
No 56
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=24.17 E-value=3.1e+02 Score=32.56 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=70.4
Q ss_pred HhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCccccCCcchhcchhHHHHHhhccc-----ccchH
Q 008710 57 DAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKES-----GTSIL 131 (557)
Q Consensus 57 ~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~-----~~~~~ 131 (557)
.-=|.+||-+||+++- .++-.+ +-+.|--+++++..-..=. -.-||-|++.+.... ++.++
T Consensus 564 kekgl~~l~~ll~~~~------------~~vv~s-~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 564 KEKGLPPLVELLRNDD------------SDVVRS-AAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred hccCccHHHHHHhcCC------------chHHHH-HHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHH
Confidence 3457799999999962 223233 3355556666655431111 234677777774332 24455
Q ss_pred HHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCc-chHHHHHHHHHHHHhh
Q 008710 132 EECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS-RLMELAIRLLQLMLSK 188 (557)
Q Consensus 132 ~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s-~~~e~Al~LL~~Ll~~ 188 (557)
.-++-+|..|.+....+++.+.+.+.++++ -.|.. ...| -..+.|=.+|..|...
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL-~~I~~-s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKL-RLISK-SQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHhccChHHH-HHHhc-ccCCHHHHHHHHHHHHHHHHH
Confidence 777777877755899999999999999997 44432 2222 2244555555555444
No 57
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=9.6e+02 Score=26.12 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=74.5
Q ss_pred hcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC-CccccCCcchhc--chhHHHHHhhcccccchHHHH
Q 008710 58 AVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMVS--KVPPILELMLKESGTSILEEC 134 (557)
Q Consensus 58 Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~-~pe~A~~~~~v~--~IP~l~~~l~~~~~~~~~~~~ 134 (557)
=+...++..||. .. + ......+.+|..|+++-.+ .|..- .++.+ -.+.|+.++++.++.++-.-+
T Consensus 120 l~~~ggl~~ll~-~l-~--------~~~~~lR~~Aa~Vigt~~qNNP~~Q--e~v~E~~~L~~Ll~~ls~~~~~~~r~ka 187 (342)
T KOG2160|consen 120 LISLGGLVPLLG-YL-E--------NSDAELRELAARVIGTAVQNNPKSQ--EQVIELGALSKLLKILSSDDPNTVRTKA 187 (342)
T ss_pred HhhccCHHHHHH-Hh-c--------CCcHHHHHHHHHHHHHHHhcCHHHH--HHHHHcccHHHHHHHHccCCCchHHHHH
Confidence 345567777776 31 1 1256678999999998875 66543 11111 346688888866665553445
Q ss_pred HHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcc-cCcchHHHHHHHHHHHHhhc
Q 008710 135 YEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFA-DGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 135 ~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~-~~s~~~e~Al~LL~~Ll~~~ 189 (557)
+-.+++.---.+.|...|..-++...|-. ++.-. ..-...-.|+.|+..|+..-
T Consensus 188 L~AissLIRn~~~g~~~fl~~~G~~~L~~-vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 188 LFAISSLIRNNKPGQDEFLKLNGYQVLRD-VLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 44443332378999999999887887634 44312 22233467888888888774
No 58
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=22.38 E-value=1e+03 Score=25.87 Aligned_cols=185 Identities=15% Similarity=0.101 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCCccccC--CcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhh-----hHhhhcCChH
Q 008710 87 AYLQLSVTVLAAFCRVPEIAS--SEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGV-----TTLYESGGMK 159 (557)
Q Consensus 87 ~~~~LavsvLa~F~~~pe~A~--~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~-----~~l~~~g~i~ 159 (557)
.-..=.+.+|+++|+.+++.. .+.+++++-... ....+......++++|+.+........ ....++..++
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~---~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSIRLLNKLSIVC---QSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVP 93 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHH
Confidence 444556889999999887751 333333321111 111233334666777766632222222 1222334677
Q ss_pred HHHHHHhhcccCcc-hHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhh---------hcc---hhhHHHHH
Q 008710 160 VLAFQMSTFADGSR-LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAV---------LHN---ALKFESLH 226 (557)
Q Consensus 160 ~l~~~i~~~~~~s~-~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~---------~~~---~~Kfe~~~ 226 (557)
.+...+......+. ..+..+.++..++.... .....+.. ..++..+-.-|.. ... +..-....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv-~~l~~~~q---~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (415)
T PF12460_consen 94 RLFELALQASDQSSDLDDRVLELLSRLINLIV-RSLSPEKQ---QEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVI 169 (415)
T ss_pred HHHHHHHhhcccccccchHHHHHHHHHHHHHH-HhCCHHHH---HHHHHHHHHHHccccccCCCCccccccccccccHHH
Confidence 76555443222111 23455655555555541 11211111 2234444444441 111 12334445
Q ss_pred HHHHhhccchhhhHHHHhhcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 008710 227 LLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIK 287 (557)
Q Consensus 227 ~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~ 287 (557)
++..++..-. +.. .-. -...+...+..+..+--.+..|..++++.+.++..+
T Consensus 170 l~~~il~~l~-~~~-------~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~ 221 (415)
T PF12460_consen 170 LFSAILCSLR-KDV-------SLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKW 221 (415)
T ss_pred HHHHHHHcCC-ccc-------Ccc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 5666665541 111 111 122244455555444444888999999888888775
No 59
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=22.24 E-value=1.5e+03 Score=27.89 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred cchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC-CccccCCcchhcch-hHHHHHhhcccc----cchHHHH
Q 008710 61 PRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDMVSKV-PPILELMLKESG----TSILEEC 134 (557)
Q Consensus 61 ~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~-~pe~A~~~~~v~~I-P~l~~~l~~~~~----~~~~~~~ 134 (557)
|+|||=|+.=.+.. ..+-+.|-+-.|+.-|+ |||.+ ..|-++| |.+.++..+.++ ...+.|+
T Consensus 529 p~ild~L~qlas~~----------s~evl~llmE~Ls~vv~~dpef~--as~~skI~P~~i~lF~k~s~DP~V~~~~qd~ 596 (1005)
T KOG2274|consen 529 PMILDGLLQLASKS----------SDEVLVLLMEALSSVVKLDPEFA--ASMESKICPLTINLFLKYSEDPQVASLAQDL 596 (1005)
T ss_pred hHHHHHHHHHcccc----------cHHHHHHHHHHHHHHhccChhhh--hhhhcchhHHHHHHHHHhcCCchHHHHHHHH
Q ss_pred HHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccC----cchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHH
Q 008710 135 YEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG----SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVA 210 (557)
Q Consensus 135 ~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~----s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la 210 (557)
++-|.-++.-...=++.++.. .-.+.. .++ +-....|+.+|.+.+... +..+.+.- .-..+++++
T Consensus 597 f~el~q~~~~~g~m~e~~iPs------lisil~-~~~~~~~~~l~~~aidvLttvvr~t-p~pL~~~l---~~~~FpaVa 665 (1005)
T KOG2274|consen 597 FEELLQIAANYGPMQERLIPS------LISVLQ-LNADKAPAGLCAIAIDVLTTVLRNT-PSPLPNLL---ICYAFPAVA 665 (1005)
T ss_pred HHHHHHHHHhhcchHHHHHHH------HHHHHc-CcccccCchhhHHHHHHHHHHHhcC-CCCccHHH---HHHHhHHhH
Q ss_pred HHHhhhcchhhHHH-HHHHHHhhccchhhhHHHHhhcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcC
Q 008710 211 REFAVLHNALKFES-LHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKG 288 (557)
Q Consensus 211 ~~F~~~~~~~Kfe~-~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G 288 (557)
+--.+..+..-++. =+.|..+++.. +-......+....-.-+|..-+..+|.-+.+..----+=.|...+..++|
T Consensus 666 k~tlHsdD~~tlQ~~~EcLra~Is~~---~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~ 741 (1005)
T KOG2274|consen 666 KITLHSDDHETLQNATECLRALISVT---LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHAS 741 (1005)
T ss_pred hheeecCChHHHHhHHHHHHHHHhcC---HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHH
No 60
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=22.01 E-value=63 Score=33.35 Aligned_cols=85 Identities=24% Similarity=0.224 Sum_probs=53.4
Q ss_pred HhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHH-HHHHHHHhcC--CccccCCcchhcchhHHHHHhhcccccchHHH
Q 008710 57 DAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQL-SVTVLAAFCR--VPEIASSEDMVSKVPPILELMLKESGTSILEE 133 (557)
Q Consensus 57 ~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~L-avsvLa~F~~--~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~ 133 (557)
+|-=+=||.|-|+|.+++ ...+|+.| ++.|++++-. +|++-.-=.-.+-||+.+.||..+++.+- --
T Consensus 139 ~AhiplflypfLntss~~---------~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSk-tv 208 (315)
T COG5209 139 DAHIPLFLYPFLNTSSSN---------SKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSK-TV 208 (315)
T ss_pred ecccceeeHhhhhccccC---------CccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHH-HH
Confidence 344456888999987443 36677766 6889999986 56655433445678999999988776442 22
Q ss_pred HHHHHHHHHhcCchhhhHh
Q 008710 134 CYEFLYLVTNATGDGVTTL 152 (557)
Q Consensus 134 ~~~~L~~ia~a~~~G~~~l 152 (557)
+.-++..|- .-..|-+..
T Consensus 209 aifI~qkil-~dDvGLqYi 226 (315)
T COG5209 209 AIFIFQKIL-GDDVGLQYI 226 (315)
T ss_pred HHHHHHHHh-ccchhHHHH
Confidence 333334442 345555543
No 61
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.75 E-value=4.9e+02 Score=25.44 Aligned_cols=65 Identities=8% Similarity=0.108 Sum_probs=47.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCchhHHHHHHHHHHhhcCchhhHHHHHhhh
Q 008710 377 GLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELL 442 (557)
Q Consensus 377 ~~l~~~~~~q~~~~L~Ea~~~VL~~L~~~~~~~~~~~~~v~AsvRvLgawLAEe~sal~~~v~~LL 442 (557)
..|++.+.-+++..|.++|+-++.--+.+-|+-.+ =..-+-.++.|++|+.|.--.+-+.+..+|
T Consensus 90 ~~~~~~~k~~~LasLaDsf~K~vaaskr~lPets~-LavA~~vl~~l~~fv~e~~P~h~~af~eiL 154 (165)
T PF08822_consen 90 EDMPPQEKVELLASLADSFSKMVAASKRVLPETSE-LAVAMEVLELLAAFVQERYPQHLAAFLEIL 154 (165)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhhcCchHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45999999999999999998877765554333322 011355678899999998877777766666
No 62
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=21.08 E-value=4e+02 Score=32.20 Aligned_cols=119 Identities=11% Similarity=0.142 Sum_probs=68.6
Q ss_pred chhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhc-ccC-----cchHHHHHHHHH
Q 008710 110 DMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTF-ADG-----SRLMELAIRLLQ 183 (557)
Q Consensus 110 ~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~-~~~-----s~~~e~Al~LL~ 183 (557)
.|+.+|+.+.+ -+.+...+.-.+..|...+ -.+.++++|++.|+++.|...+... .++ .--.|.-+.|+.
T Consensus 121 ~ll~~l~~~~~---~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 121 VLLSRLDSIRD---FSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHhhcc---ccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 34555444443 1223344566677776555 6899999999999999998765322 121 244567777777
Q ss_pred HHHhhccccccc-------c-----cChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhh
Q 008710 184 LMLSKLSLEIIT-------N-----DYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVL 232 (557)
Q Consensus 184 ~Ll~~~~~~~~~-------~-----~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL 232 (557)
.++.....+... . .+...+..++.++...+.......-=.++++|+.+-
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt 257 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLT 257 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHh
Confidence 888776532211 0 245557777777776555443333222344444443
No 63
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=20.58 E-value=1.6e+02 Score=20.93 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=30.8
Q ss_pred chhhhhhhccCChHHHHHHHHHHhcCCCccccCchHHHHHHHHHHHHH
Q 008710 474 IEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLL 521 (557)
Q Consensus 474 ~~gr~il~~~~~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~ 521 (557)
++.++.++..|+...|++++. . .+......||..+-|+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~----~-----~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLK----S-----PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT----S-----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHc----C-----CCHHHHHHHHHHHHHHh
Confidence 567889999999999888774 1 24467788999999985
No 64
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=20.54 E-value=6e+02 Score=28.46 Aligned_cols=141 Identities=16% Similarity=0.250 Sum_probs=76.8
Q ss_pred HHHHHHH------------HHhc----C-CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCc------
Q 008710 90 QLSVTVL------------AAFC----R-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATG------ 146 (557)
Q Consensus 90 ~LavsvL------------a~F~----~-~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~------ 146 (557)
++.+.+| +.|| + .|.+|.+-.=.+-||.|.+++..+.-+-++.-|+-++..+.. ..
T Consensus 201 ~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~-k~~~~~~~ 279 (442)
T KOG2759|consen 201 SLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD-KGPDRETK 279 (442)
T ss_pred hhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCchhhHH
Confidence 5666677 6777 2 677775556667889999999988888888999988877752 33
Q ss_pred -hhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccc-c-cc--ccChhhHHHH-H----HHHHHHHh--
Q 008710 147 -DGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLE-I-IT--NDYLSELSTI-V----TVVAREFA-- 214 (557)
Q Consensus 147 -~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~-~-~~--~~~~~~l~~l-v----~~la~~F~-- 214 (557)
+-...++..++.+.+ .-+ .++.+.-|.-.+-+..|-+++... + .. -+|.+++.+= + ..-+..|=
T Consensus 280 k~~~~~mv~~~v~k~l-~~L---~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 280 KDIASQMVLCKVLKTL-QSL---EERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred HHHHHHHHhcCchHHH-HHH---HhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 112333444444442 322 234444444444444444443200 0 00 0111111100 0 00011111
Q ss_pred --hhcchhhHHHHHHHHHhhccc
Q 008710 215 --VLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 215 --~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
..=++.++|++++|..+|...
T Consensus 356 Na~rlnennyellkiL~~lLe~s 378 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETS 378 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcC
Confidence 112567899999999999776
Done!