Query 008710
Match_columns 557
No_of_seqs 98 out of 105
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 97.5 0.0051 1.8E-07 57.7 18.5 236 17-287 3-243 (252)
2 4db8_A Armadillo-repeat protei 97.1 0.009 3.1E-07 56.7 14.7 197 13-235 9-211 (252)
3 4db6_A Armadillo repeat protei 97.1 0.012 4E-07 54.4 14.8 156 14-188 10-168 (210)
4 2z6h_A Catenin beta-1, beta-ca 97.0 0.2 7E-06 54.9 26.1 194 17-234 99-293 (644)
5 4db8_A Armadillo-repeat protei 96.9 0.011 3.9E-07 55.9 13.6 154 17-187 55-209 (252)
6 3tpo_A Importin subunit alpha- 96.9 0.037 1.3E-06 59.5 18.4 205 15-235 75-282 (529)
7 1xqr_A HSPBP1 protein; armadil 96.8 0.11 3.7E-06 52.6 20.1 195 15-235 27-240 (296)
8 4b8j_A Importin subunit alpha- 96.8 0.036 1.2E-06 58.9 17.2 240 14-284 72-314 (528)
9 4hxt_A De novo protein OR329; 96.7 0.03 1E-06 52.4 14.3 194 17-235 45-243 (252)
10 3ul1_B Importin subunit alpha- 96.6 0.017 6E-07 61.9 13.9 205 15-235 56-263 (510)
11 2jdq_A Importin alpha-1 subuni 96.5 0.4 1.4E-05 48.8 22.5 236 17-285 108-347 (450)
12 4db6_A Armadillo repeat protei 96.4 0.032 1.1E-06 51.3 12.5 150 17-185 55-207 (210)
13 3nmw_A APC variant protein; AR 96.3 0.03 1E-06 58.1 12.6 195 18-235 129-336 (354)
14 2z6g_A B-catenin; FULL-length, 96.0 0.58 2E-05 53.1 22.5 152 17-186 193-347 (780)
15 1wa5_B Importin alpha subunit; 96.0 0.17 5.9E-06 53.8 17.2 200 15-235 86-288 (530)
16 1wa5_B Importin alpha subunit; 95.9 0.69 2.4E-05 49.1 21.4 237 17-286 174-413 (530)
17 1xm9_A Plakophilin 1; armadill 95.9 0.029 1E-06 59.5 10.2 131 17-165 3-136 (457)
18 2jdq_A Importin alpha-1 subuni 95.7 0.048 1.6E-06 55.8 10.8 215 1-235 3-223 (450)
19 1jdh_A Beta-catenin; beta-cate 95.7 0.16 5.6E-06 53.1 14.9 232 17-283 102-337 (529)
20 3grl_A General vesicular trans 95.6 0.19 6.4E-06 56.4 15.7 251 15-284 121-393 (651)
21 3nmz_A APC variant protein; pr 95.6 0.13 4.4E-06 55.4 14.0 153 18-187 245-408 (458)
22 4b8j_A Importin subunit alpha- 95.6 0.39 1.3E-05 50.8 17.7 236 16-284 117-357 (528)
23 1xqr_A HSPBP1 protein; armadil 95.5 0.11 3.6E-06 52.7 12.2 155 17-189 82-240 (296)
24 3now_A UNC-45 protein, SD10334 95.4 0.46 1.6E-05 54.7 18.5 239 17-285 496-737 (810)
25 3l6x_A Catenin delta-1; cateni 95.0 0.091 3.1E-06 58.3 10.8 144 6-165 38-183 (584)
26 3tpo_A Importin subunit alpha- 94.5 1.1 3.6E-05 48.1 17.3 167 52-235 197-366 (529)
27 3tt9_A Plakophilin-2; cell adh 94.3 0.12 4.3E-06 50.6 8.6 134 13-162 5-141 (233)
28 1xm9_A Plakophilin 1; armadill 94.2 0.41 1.4E-05 50.6 13.1 157 16-188 44-221 (457)
29 2z6h_A Catenin beta-1, beta-ca 94.0 1 3.5E-05 49.3 16.2 152 17-186 57-211 (644)
30 1jdh_A Beta-catenin; beta-cate 93.8 0.42 1.5E-05 49.9 12.1 154 17-188 186-340 (529)
31 3ul1_B Importin subunit alpha- 93.7 0.73 2.5E-05 49.2 14.1 199 19-235 146-347 (510)
32 3nmw_A APC variant protein; AR 93.3 2.8 9.6E-05 43.2 17.3 223 33-287 101-336 (354)
33 2z6g_A B-catenin; FULL-length, 93.3 2.9 9.9E-05 47.3 18.8 139 14-165 397-539 (780)
34 3now_A UNC-45 protein, SD10334 92.8 3.1 0.00011 47.9 18.0 237 18-285 379-652 (810)
35 3l6x_A Catenin delta-1; cateni 92.0 1.2 4.2E-05 49.3 13.1 160 17-189 91-272 (584)
36 3tt9_A Plakophilin-2; cell adh 92.0 0.62 2.1E-05 45.6 9.7 158 17-189 53-231 (233)
37 3nmz_A APC variant protein; pr 91.5 6 0.0002 42.3 17.4 181 33-233 217-408 (458)
38 2qk2_A LP04448P; mini spindles 85.7 23 0.0008 33.1 16.0 177 89-289 32-209 (242)
39 4fdd_A Transportin-1; heat rep 85.4 46 0.0016 37.3 20.1 367 116-546 93-490 (852)
40 3opb_A SWI5-dependent HO expre 85.3 58 0.002 37.3 20.8 238 23-287 464-730 (778)
41 2qk1_A Protein STU2; STU2P, XM 76.3 56 0.0019 31.4 15.7 206 55-290 13-225 (249)
42 3opb_A SWI5-dependent HO expre 70.5 20 0.00068 41.1 11.0 159 115-285 459-635 (778)
43 1u6g_C TIP120 protein, CAND1; 68.6 1.3E+02 0.0043 35.3 17.7 233 15-289 5-247 (1230)
44 3grl_A General vesicular trans 64.1 55 0.0019 36.7 12.6 213 5-235 10-243 (651)
45 2bpt_A Importin beta-1 subunit 58.2 2.1E+02 0.0073 31.2 16.7 184 89-291 517-717 (861)
46 2qk2_A LP04448P; mini spindles 57.1 1.2E+02 0.0042 28.0 12.5 160 105-289 6-166 (242)
47 2bpt_A Importin beta-1 subunit 47.5 3.1E+02 0.011 29.9 30.8 236 24-291 377-633 (861)
48 2vgl_B AP-2 complex subunit be 43.8 3.3E+02 0.011 29.1 20.6 151 114-287 161-313 (591)
49 2of3_A ZYG-9; multifunctional 42.6 67 0.0023 31.9 8.1 97 176-290 105-201 (266)
50 1u6g_C TIP120 protein, CAND1; 40.2 2.3E+02 0.0078 33.0 13.5 232 18-290 50-289 (1230)
51 1qgr_A Protein (importin beta 38.1 4.3E+02 0.015 28.8 15.7 183 88-289 580-778 (876)
52 4gmo_A Putative uncharacterize 34.1 2.5E+02 0.0084 31.0 11.9 147 20-185 38-209 (684)
53 3b2a_A TON_1937, putative unch 26.8 2.1E+02 0.0071 28.5 8.4 148 110-286 72-219 (265)
54 3dad_A FH1/FH2 domain-containi 22.8 6.3E+02 0.022 25.9 12.6 184 90-285 136-335 (339)
55 1b3u_A Protein (protein phosph 22.5 6.3E+02 0.021 25.8 19.3 152 11-189 5-157 (588)
56 1zl8_A LIN-7; heterodimer, alp 21.3 88 0.003 23.7 3.5 39 18-59 9-52 (53)
57 1qgr_A Protein (importin beta 21.0 8.2E+02 0.028 26.5 22.1 102 177-292 583-686 (876)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.55 E-value=0.0051 Score=57.70 Aligned_cols=236 Identities=17% Similarity=0.214 Sum_probs=157.8
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|++.+.+-|..++..+.++...+ .+..+.+.++=+.+.|-++|+++ ...-+.-++..|
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~-------------~~~v~~~a~~~L 68 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTST-------------DSEVQKEAARAL 68 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCC-------------CHHHHHHHHHHH
Confidence 4778899999988888999999999999864 36677777776667777888763 144577788888
Q ss_pred HHhcCC-ccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 97 AAFCRV-PEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 97 a~F~~~-pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
..++.. |+.. ..++ +-||.|++.+.. ++..+...|..+|..++...++..+.+.+.|+++.+...+.. ....
T Consensus 69 ~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~ 143 (252)
T 4hxt_A 69 ANIASGPDEAI--KAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSE 143 (252)
T ss_dssp HHHTTSCHHHH--HHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHH
T ss_pred HHHHcCChHHH--HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHH
Confidence 998875 5443 2222 458999999875 456667999999999964578888999999999998554432 2233
Q ss_pred hHHHHHHHHHHHHhhcccccccccChhhH--HHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccc
Q 008710 174 LMELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSK 251 (557)
Q Consensus 174 ~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l--~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~ 251 (557)
-...|+..|..+..... + ..+.+ ...++.+..-+.......+..++..|..+.... +......
T Consensus 144 ~~~~a~~~L~~l~~~~~-~-----~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l-------- 208 (252)
T 4hxt_A 144 VQKEAARALANIASGPD-E-----AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAI-------- 208 (252)
T ss_dssp HHHHHHHHHHHHTTSCH-H-----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCH-H-----HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHH--------
Confidence 45667777777655321 1 11111 125555666555666688888999998888643 2211111
Q ss_pred hhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 008710 252 WSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIK 287 (557)
Q Consensus 252 W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~ 287 (557)
....+..-|..++++. .+.-|..|+.....+....
T Consensus 209 ~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCC
Confidence 0112334566666654 4566777777766666544
No 2
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.11 E-value=0.009 Score=56.65 Aligned_cols=197 Identities=15% Similarity=0.228 Sum_probs=136.1
Q ss_pred CCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHH
Q 008710 13 APSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLS 92 (557)
Q Consensus 13 ~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~La 92 (557)
+....++.-.++|++.+.+.+..++--+++++.. +.+..+.+.++=+.+.|-++|+++ ....+.-|
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~-------------~~~v~~~a 74 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQEA 74 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCS-------------CHHHHHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCC-------------CHHHHHHH
Confidence 3455699999999999988999999888887765 555677777776667778888764 14567788
Q ss_pred HHHHHHhcC-CccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhh-hHhhhcCChHHHHHHHhhc
Q 008710 93 VTVLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGV-TTLYESGGMKVLAFQMSTF 168 (557)
Q Consensus 93 vsvLa~F~~-~pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~-~~l~~~g~i~~l~~~i~~~ 168 (557)
+.+|..++. .|+.. ..++ +-||.|++.+... +..+...|..+|..++ ..++.. ..+.+.|+++.+...+..
T Consensus 75 ~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~~i~~L~~lL~~- 149 (252)
T 4db8_A 75 LWALSNIASGGNEQI--QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSS- 149 (252)
T ss_dssp HHHHHHHTTSCHHHH--HHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHT-TSCHHHHHHHHHTTHHHHHHHGGGC-
T ss_pred HHHHHHHhcCCHHHH--HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhh-cCCchHHHHHHHCCCHHHHHHHHhC-
Confidence 889999997 55544 2333 3589999999774 4566799999999997 567776 888999999998554432
Q ss_pred ccCcchHHHHHHHHHHHHhhcccccccccChhhH--HHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 169 ADGSRLMELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 169 ~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l--~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
+...-...|+..|..|..... + ....+ ..+++.+..-+.......+-.++..|..+....
T Consensus 150 -~~~~v~~~a~~~L~~l~~~~~-~-----~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 150 -PNEQILQEALWALSNIASGGN-E-----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred -CCHHHHHHHHHHHHHHHcCCh-H-----HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 222345667777777665421 1 11111 123455555555555667788888888887543
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.08 E-value=0.012 Score=54.36 Aligned_cols=156 Identities=16% Similarity=0.256 Sum_probs=111.0
Q ss_pred CCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 008710 14 PSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (557)
Q Consensus 14 ~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (557)
..........+|++.+.+-|..++..+.++... +.+..+.+.++=+.+.|-++|+++ ....+.-|+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~v~~~a~ 75 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASG-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQEAL 75 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHH
Confidence 455677888999999999999999999999874 556677788776667788888763 123466788
Q ss_pred HHHHHhcC-CccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhccc
Q 008710 94 TVLAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFAD 170 (557)
Q Consensus 94 svLa~F~~-~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~ 170 (557)
..|..++. .|+.. ..+ .+-||.|++.+... +..+...|+.+|..++...++..+.+++.|+++.+...+.. .
T Consensus 76 ~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~ 150 (210)
T 4db6_A 76 WALSNIASGGNEQI--QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--P 150 (210)
T ss_dssp HHHHHHTTSCHHHH--HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--S
T ss_pred HHHHHHhcCCcHHH--HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--C
Confidence 88998885 44432 112 24689999999765 45667899999999975566677788899999998554432 2
Q ss_pred CcchHHHHHHHHHHHHhh
Q 008710 171 GSRLMELAIRLLQLMLSK 188 (557)
Q Consensus 171 ~s~~~e~Al~LL~~Ll~~ 188 (557)
...-...|+..|..+...
T Consensus 151 ~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 151 NEQILQEALWALSNIASG 168 (210)
T ss_dssp CHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHcC
Confidence 333456777777777654
No 4
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.98 E-value=0.2 Score=54.93 Aligned_cols=194 Identities=12% Similarity=0.139 Sum_probs=124.2
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|++.++.-++.++-.+.+++... .+..+.+.++=+.+.|-++|+++ +. ..+..++..|
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~------------~~-~~~~~a~~~L 164 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT------------NV-KFLAITTDCL 164 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC------------CH-HHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcC------------CH-HHHHHHHHHH
Confidence 4667777887777777788888888877643 22344555555567777777763 12 3566667778
Q ss_pred HHhcC-CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchH
Q 008710 97 AAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (557)
Q Consensus 97 a~F~~-~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~ 175 (557)
..++. .++....--=.+-||.|++++...+.+.....+..+|..++ ..++.+..+++.|+++.+...+.. ....-.
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs-~~~~~~~~l~~~g~l~~L~~ll~~--~~~~~~ 241 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTD--PSQRLV 241 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-TCTTHHHHHHHTTHHHHHHTTTTC--SCHHHH
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhc--CCHHHH
Confidence 87775 44432100011448999999987766666678889999997 688999999999999998544331 223334
Q ss_pred HHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhcc
Q 008710 176 ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (557)
Q Consensus 176 e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~ 234 (557)
+.++..|..|-... ... + ....+++.|.+-+.......+-.++..|..+-..
T Consensus 242 ~~a~~~L~nL~~~~-~~~---~---~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 242 QNCLWTLRNLSDAA-TKQ---E---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHHHHGGGC-TTC---C---SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcc-hhh---h---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 56666666664332 111 1 1234566666655555556677778888777554
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.93 E-value=0.011 Score=55.95 Aligned_cols=154 Identities=16% Similarity=0.241 Sum_probs=107.5
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|+..+.+-+..++..+.++... +.+....+.++=+.+.|-++|+++ ....+.-|+..|
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~v~~~a~~~L 120 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQEALWAL 120 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHGGGCS-------------CHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 456677888888888888888888888874 455566777775667788888773 234577888999
Q ss_pred HHhcCCcccc-CCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchH
Q 008710 97 AAFCRVPEIA-SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (557)
Q Consensus 97 a~F~~~pe~A-~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~ 175 (557)
..++..++.. ..---.+-||.|++.+... +..+...++.+|..++...++..+.+.+.|+++.+...+.. ....-.
T Consensus 121 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~ 197 (252)
T 4db8_A 121 SNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQIL 197 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHH
T ss_pred HHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHH
Confidence 9998865543 1111124579999999654 55667999999999974455667778899999998554432 223345
Q ss_pred HHHHHHHHHHHh
Q 008710 176 ELAIRLLQLMLS 187 (557)
Q Consensus 176 e~Al~LL~~Ll~ 187 (557)
..|+..|..+..
T Consensus 198 ~~a~~~L~~l~~ 209 (252)
T 4db8_A 198 QEALWALSNIAS 209 (252)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 667777777664
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.86 E-value=0.037 Score=59.55 Aligned_cols=205 Identities=16% Similarity=0.109 Sum_probs=131.5
Q ss_pred CccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
...+++.++.+++.+-+.++.++--+.|++..++...+..|-++=+.+-|-++|... . ....+.-|..
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~--~----------~~~~q~~Aa~ 142 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--D----------CSPIQFESAW 142 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT--T----------CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC--C----------CHHHHHHHHH
Confidence 456999999999999999999999999998765544566676664446666667553 1 1233444666
Q ss_pred HHHHhcC-CccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccC
Q 008710 95 VLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (557)
Q Consensus 95 vLa~F~~-~pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~ 171 (557)
+|..++. .++.. ..++ +-||.|+..+.. ++..+...|..+|..++..+++-+..+++.|+++.+...+.. .+.
T Consensus 143 aL~nia~~~~~~~--~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~-~~~ 218 (529)
T 3tpo_A 143 ALTNIASGTSEQT--KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAV-PDL 218 (529)
T ss_dssp HHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCS-SCG
T ss_pred HHHHHHcCCHHHH--HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhc-cch
Confidence 7777775 34332 1122 458999997765 445567899999999974467888889999999998554432 222
Q ss_pred cchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 172 s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
+......++-....++.+...............+++.|.+-......+.+..+|..|..+....
T Consensus 219 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 219 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp GGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred hHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh
Confidence 2212223333333333332111111223334567777887777777788888898888877654
No 7
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.77 E-value=0.11 Score=52.57 Aligned_cols=195 Identities=16% Similarity=0.246 Sum_probs=133.4
Q ss_pred CccHHHHHHHhccC------------CchhHHHHHHHHHhcCCCCCHHHHHHHHHhcC-c-chHHHHHhcCCCCCCCCCC
Q 008710 15 SPSLDDCLKLLKGE------------RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVG-P-RFLDRLLRTGLGKGINSGN 80 (557)
Q Consensus 15 ~~~l~~cl~lLk~~------------~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig-~-~FL~RLL~T~~~~~~~~~~ 80 (557)
...+++|+..|++. +.++|..+|-.+..++++.| ....+. .+| . .++.|||.++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d--na~~~~-~~G~l~~Lv~~lL~s~--------- 94 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD--NAADFC-QLSGMHLLVGRYLEAG--------- 94 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH--HHHHHH-HTTHHHHHHHTTTTCS---------
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh--hHHHHH-HcCCHHHHHHHHHcCC---------
Confidence 34589999999974 34689999999999999533 222333 334 2 5666688764
Q ss_pred CCcchHHHHHHHHHHHHHhcC-CccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCC
Q 008710 81 SSENRDAYLQLSVTVLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGG 157 (557)
Q Consensus 81 ~~~~~~~~~~LavsvLa~F~~-~pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~ 157 (557)
....+.-|+.+|+..++ .|+.- ..++ +-||.|+..+...++.++...|+-+|..++...+++.+.+.+.|+
T Consensus 95 ----~~~vr~~Aa~~Lg~ia~~n~~~~--~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 95 ----AAGLRWRAAQLIGTCSQNVAAIQ--EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp ----SHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred ----CHHHHHHHHHHHHHHHhCCHHHH--HHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 23567788888888887 44432 1222 568999999986556677789999999987567888999999999
Q ss_pred hHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 158 MKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 158 i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
++.|...+.. ....-...|.-.|..|.... .+ ..+.+. .+++.|..-....+...+-.++..|..++...
T Consensus 169 i~~L~~lL~~--~d~~v~~~A~~aLs~L~~~~-~~-----~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 169 FSVLMRAMQQ--QVQKLKVKSAFLLQNLLVGH-PE-----HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHS--SCHHHHHHHHHHHHHHHHHC-GG-----GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHhCC-hH-----HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 9998655542 22233455677777766552 12 222222 25666777666667778888899998888774
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.76 E-value=0.036 Score=58.88 Aligned_cols=240 Identities=12% Similarity=0.085 Sum_probs=149.7
Q ss_pred CCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 008710 14 PSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (557)
Q Consensus 14 ~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (557)
....+...+++|++.+.+.++.++-.+++++..++...++.+.++=+.+.|-++|.+. +....+.-|+
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~------------~~~~v~~~A~ 139 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE------------DFPQLQFEAA 139 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT------------TCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC------------CCHHHHHHHH
Confidence 3456899999999888889999999999998865544566677776678888888764 1134566788
Q ss_pred HHHHHhcCC-ccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhccc
Q 008710 94 TVLAAFCRV-PEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFAD 170 (557)
Q Consensus 94 svLa~F~~~-pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~ 170 (557)
..|..++.. |+... .++ +-||.|++.+.. ++..+...|..+|..++...+..+..+.+.|+++.+...+.. ..
T Consensus 140 ~~L~~l~~~~~~~~~--~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~-~~ 215 (528)
T 4b8j_A 140 WALTNIASGTSENTK--VVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE-HT 215 (528)
T ss_dssp HHHHHHHTSCHHHHH--HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT-TC
T ss_pred HHHHHHhCCCHHHHH--HHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc-CC
Confidence 888888874 44321 122 468999999976 445667889999999974446667788899999998654422 12
Q ss_pred CcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCcc
Q 008710 171 GSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDS 250 (557)
Q Consensus 171 ~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~ 250 (557)
...-...|...|..|.... +. ........+++.|..-........+..+|..|..+.... +.......
T Consensus 216 ~~~v~~~a~~~L~~L~~~~-~~----~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~------ 283 (528)
T 4b8j_A 216 KLSMLRNATWTLSNFCRGK-PQ----PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT-NDKIQAVI------ 283 (528)
T ss_dssp CHHHHHHHHHHHHHHHCSS-SC----CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC-HHHHHHHH------
T ss_pred CHHHHHHHHHHHHHHHcCC-CC----CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHH------
Confidence 2233455666666665542 11 111222345666666555555667778888888877553 11111110
Q ss_pred chhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHH
Q 008710 251 KWSMYMRVGVVAILQNRVAPAEKLQALILAESIV 284 (557)
Q Consensus 251 ~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll 284 (557)
...+..-|..+|++. .+.-|.+|+.....+.
T Consensus 284 --~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 284 --EAGVCPRLVELLLHP-SPSVLIPALRTVGNIV 314 (528)
T ss_dssp --HTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred --HcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHH
Confidence 011223455666554 3455666665554443
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.69 E-value=0.03 Score=52.42 Aligned_cols=194 Identities=18% Similarity=0.246 Sum_probs=123.7
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|++.+++-|-.++..+.++... +.+....+.+.=+.+.|-++|+++ ....+.-|+.+|
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~ll~~~-------------~~~v~~~a~~~L 110 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTST-------------DSEVQKEAARAL 110 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCS-------------SHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 466777788877777777777777787763 355566666665667777777653 245677889999
Q ss_pred HHhcC-CccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 97 AAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 97 a~F~~-~pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
..+|. .|+... .++ +-||.|++.+...+ ..+...++.+|..++...+...+.+.+.|+++.+...+. .....
T Consensus 111 ~~l~~~~~~~~~--~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~ 185 (252)
T 4hxt_A 111 ANIASGPDEAIK--AIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSE 185 (252)
T ss_dssp HHHTTSCHHHHH--HHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred HHHHcCCHHHHH--HHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHH
Confidence 99994 555442 222 45899999987544 556799999999997434555578889999999855443 23234
Q ss_pred hHHHHHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 174 LMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 174 ~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
-...|+..|..+.... .+ ..+.+. .+++.+..-........|-+++..|..+....
T Consensus 186 v~~~a~~~L~~l~~~~-~~-----~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 186 VQKEAARALANIASGP-TS-----AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHTTSB-HH-----HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC-HH-----HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 4566777777766532 11 111111 13444544444444556677777777766543
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.65 E-value=0.017 Score=61.94 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=131.9
Q ss_pred CccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
.-++++.++.|++.|-+.++-|.--+.|++..++...+..|-++=+.+.|=+||... + ++ ..+--|..
T Consensus 56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~--~---------~~-~lq~~Aa~ 123 (510)
T 3ul1_B 56 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT--D---------CS-PIQFESAW 123 (510)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT--T---------CH-HHHHHHHH
T ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC--C---------CH-HHHHHHHH
Confidence 446999999999999999999999999998765444566777764446667777653 1 12 23344666
Q ss_pred HHHHhcC-CccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccC
Q 008710 95 VLAAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (557)
Q Consensus 95 vLa~F~~-~pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~ 171 (557)
.|.-++. .++.. ..++ +-||.|++.+.. ++..+...|..+|..++.-+++-++.+++.|+++.+...+.. ++.
T Consensus 124 aL~nias~~~e~~--~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~-~~~ 199 (510)
T 3ul1_B 124 ALTNIASGTSEQT--KAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV-PDL 199 (510)
T ss_dssp HHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCS-SCG
T ss_pred HHHHHhcCCHHHH--HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHh-ccc
Confidence 7777765 44432 1233 358999999975 445667899999999974457778888999999998554432 232
Q ss_pred cchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 172 s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
.......++-....++.................+++.|.+-......+.+-.+|..|..+....
T Consensus 200 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 200 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263 (510)
T ss_dssp GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch
Confidence 2222223333333333332111111223334567777777666667777888888888876554
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.50 E-value=0.4 Score=48.81 Aligned_cols=236 Identities=14% Similarity=0.163 Sum_probs=139.0
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+..-+++|++.+.+-|..++-.+.++... +.+....+.+.=+...|-++|.+. +....+.-++..|
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~------------~~~~v~~~a~~~L 174 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGD-STMCRDYVLDCNILPPLLQLFSKQ------------NRLTMTRNAVWAL 174 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTTSC------------CCHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHCCCHHHHHHHhcCC------------CCHHHHHHHHHHH
Confidence 455566666666666666677667766653 333444555554556666666542 2345688889999
Q ss_pred HHhcCC--ccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcch
Q 008710 97 AAFCRV--PEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRL 174 (557)
Q Consensus 97 a~F~~~--pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~ 174 (557)
..+|+. |... ..-+..-||.|++.+.. ++..+...++.+|..++...++..+.+.+.|+++.+...+.. ....-
T Consensus 175 ~~l~~~~~~~~~-~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v 250 (450)
T 2jdq_A 175 SNLCRGKSPPPE-FAKVSPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH--NDYKV 250 (450)
T ss_dssp HHHHCCSSSCCC-GGGTGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC--SCHHH
T ss_pred HHHhCCCCCCCC-HHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC--CchhH
Confidence 999974 4332 23345678999999875 445667899999998863345667778889999998654431 22333
Q ss_pred HHHHHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccch
Q 008710 175 MELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKW 252 (557)
Q Consensus 175 ~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W 252 (557)
...|+..|..+..... +. .+.+. .+++.+..-........+.+++..|..+-... +.......
T Consensus 251 ~~~a~~~L~~l~~~~~-~~-----~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~-------- 315 (450)
T 2jdq_A 251 VSPALRAVGNIVTGDD-IQ-----TQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN-RAQIQTVI-------- 315 (450)
T ss_dssp HHHHHHHHHHHTTSCH-HH-----HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHHHHHHH--------
T ss_pred HHHHHHHHHHHhhCCh-HH-----HHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHH--------
Confidence 4667777777765431 10 00011 24555555455555567788888888877543 11111111
Q ss_pred hHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 008710 253 SMYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (557)
Q Consensus 253 ~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (557)
...+..-|..+|++. .+.-|..|......+..
T Consensus 316 ~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 316 DANIFPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 112334455666654 34445555554444443
No 12
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.44 E-value=0.032 Score=51.35 Aligned_cols=150 Identities=17% Similarity=0.259 Sum_probs=103.0
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|+..+.+-+-.++..+.++... +.+....+.+.=+.+.|-++|.++ ....+.-|+..|
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~lL~~~-------------~~~v~~~a~~~L 120 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP-------------NEQILQEALWAL 120 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHTTCS-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCHHHHHHHHcCC-------------cHHHHHHHHHHH
Confidence 466677788877777777777788887763 455566677776667777887764 234566788888
Q ss_pred HHhcC-CccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 97 AAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 97 a~F~~-~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
..+|. .|+... .+ .+-||.|++.+... +..+...|+.+|..++...++..+.+.+.|+++.+.. +.. .....
T Consensus 121 ~~l~~~~~~~~~--~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~-ll~-~~~~~ 195 (210)
T 4db6_A 121 SNIASGGNEQIQ--AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ-LQS-HENEK 195 (210)
T ss_dssp HHHTTSCHHHHH--HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-GGG-CSCHH
T ss_pred HHHHcCCHHHHH--HHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH-HHh-CCCHH
Confidence 88886 443321 12 23579999999764 5566799999999997544888888899999999744 432 22233
Q ss_pred hHHHHHHHHHHH
Q 008710 174 LMELAIRLLQLM 185 (557)
Q Consensus 174 ~~e~Al~LL~~L 185 (557)
-.+.|...|..|
T Consensus 196 v~~~a~~aL~~l 207 (210)
T 4db6_A 196 IQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456666666654
No 13
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.30 E-value=0.03 Score=58.11 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=121.1
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 008710 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (557)
Q Consensus 18 l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (557)
+..-+++|++.+++-+..+.-.+..+...+|.+....|-++=|.+.|-+||... . ....+.-|+..|.
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~--~----------~~~~~~~A~~aL~ 196 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--K----------KESTLKSVLSALW 196 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC--C----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC--C----------CHHHHHHHHHHHH
Confidence 666677777777666777766677776654555666777765667788865432 1 1234556778888
Q ss_pred HhcC-CccccCCcchh---cchhHHHHHhhccccc---chHHHHHHHHHHHHh---cCchhhhHhhhcCChHHHHHHHhh
Q 008710 98 AFCR-VPEIASSEDMV---SKVPPILELMLKESGT---SILEECYEFLYLVTN---ATGDGVTTLYESGGMKVLAFQMST 167 (557)
Q Consensus 98 ~F~~-~pe~A~~~~~v---~~IP~l~~~l~~~~~~---~~~~~~~~~L~~ia~---a~~~G~~~l~~~g~i~~l~~~i~~ 167 (557)
.++. .++.- ++++ +-||.|++.+...++. .+..++.-+|..++. ..+++.+.+.+.|+++.|...+.
T Consensus 197 nLs~~~~~nk--~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~- 273 (354)
T 3nmw_A 197 NLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK- 273 (354)
T ss_dssp HHHTTCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT-
T ss_pred HHHccChhhh--HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc-
Confidence 8887 44432 3333 5689999999876553 467889999988862 37899999999999999855443
Q ss_pred cccCc-chHHHHHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 168 FADGS-RLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 168 ~~~~s-~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
+++ .-.+.|...|..|-..- . +..+.+. -.++.|..-....+...|-+++..|..+....
T Consensus 274 --~~~~~v~~~A~~aL~nLa~~~-~-----~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 274 --SHSLTIVSNACGTLWNLSARN-P-----KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp --CSCHHHHHHHHHHHHHHTSSC-H-----HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --CCChHHHHHHHHHHHHHhCCC-H-----HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 332 23466777776664321 1 1111121 12344444333444455666666666666543
No 14
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.04 E-value=0.58 Score=53.08 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=98.1
Q ss_pred cHHHHHHHhccC-CchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 17 ~l~~cl~lLk~~-~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
.+...+++|+.. +.+-|..+.-.+.++... .+....+.+.=+.+.|-+||+++ ...-+..|+..
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~-------------~~~v~~~A~~a 257 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSP-------------VDSVLFHAITT 257 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHHHH
Confidence 466667778754 556677777777777664 33466777764457777777663 13457788888
Q ss_pred HHHhcCCccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 96 LAAFCRVPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 96 La~F~~~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
|..+|..++-.+ ..+ .+-||.|++.+.. ++..+...+..+|..++...+++...+.+.|+++.+...+.. .+...
T Consensus 258 L~nLa~~~~~~~-~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~-~~~~~ 334 (780)
T 2z6g_A 258 LHNLLLHQEGAK-MAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEK 334 (780)
T ss_dssp HHHHHHHSTTHH-HHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT-CCCHH
T ss_pred HHHHhCCChhhH-HHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc-CCHHH
Confidence 999887533221 112 2568999999976 334445677778877764568899999999999998664442 22112
Q ss_pred hHHHHHHHHHHHH
Q 008710 174 LMELAIRLLQLML 186 (557)
Q Consensus 174 ~~e~Al~LL~~Ll 186 (557)
..+.+..+|..|-
T Consensus 335 ~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 335 LLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 2334566665554
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.03 E-value=0.17 Score=53.81 Aligned_cols=200 Identities=11% Similarity=0.095 Sum_probs=129.4
Q ss_pred CccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
...+...++.|++.+.+.++.++..+++++..++...++.+.++=..+.|-++|.++ +....+.-|+.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~------------~~~~v~~~A~~ 153 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN------------QPEMLQLEAAW 153 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC------------CCHHHHHHHHH
Confidence 345888999999888888999999999998764333445566665556666666552 12345667888
Q ss_pred HHHHhcC-CccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccC
Q 008710 95 VLAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG 171 (557)
Q Consensus 95 vLa~F~~-~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~ 171 (557)
.|..++. .|+.. ..+ .+-||.|++.+.. ++..+...|+.+|..++...++.+..+.+.|+++.+...+.. ..
T Consensus 154 ~L~~l~~~~~~~~--~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~ 228 (530)
T 1wa5_B 154 ALTNIASGTSAQT--KVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS--NK 228 (530)
T ss_dssp HHHHHTTSCHHHH--HHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--CC
T ss_pred HHHHHhCCCHHHH--HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--CC
Confidence 8888886 34332 222 2568999999975 455667889999999974446778888899999998554432 22
Q ss_pred cchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 172 SRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 172 s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
..-...|+..|..|....++.. .......+++.|..-........+..+|..|..+-...
T Consensus 229 ~~v~~~a~~~L~~L~~~~~~~~----~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 229 PSLIRTATWTLSNLCRGKKPQP----DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCC----CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhCCCCCCC----cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 2234556777766664431111 11112334555555554445567777888888777553
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.94 E-value=0.69 Score=49.09 Aligned_cols=237 Identities=10% Similarity=0.108 Sum_probs=141.6
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|++.+.+-|..++-.+.+++.. +......+.+.=+...|-++|... ....+.-|+..|
T Consensus 174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~-------------~~~v~~~a~~~L 239 (530)
T 1wa5_B 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSN-------------KPSLIRTATWTL 239 (530)
T ss_dssp CHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSC-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-CccchHHHHHcCcHHHHHHHhccC-------------CHHHHHHHHHHH
Confidence 455666677766666677777777777653 333444555554456666666652 234566788999
Q ss_pred HHhcCCc-cccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchH
Q 008710 97 AAFCRVP-EIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (557)
Q Consensus 97 a~F~~~p-e~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~ 175 (557)
+.+|+.+ ..........-+|.|+..+... +..+...++.+|..++...++..+.+++.|+++.+...+.. ....-.
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~~v~ 316 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQ 316 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CChhhH
Confidence 9999753 2222333446689999988654 45667899999999874456778888899999998554431 222335
Q ss_pred HHHHHHHHHHHhhcccccccccChhhH--HHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchh
Q 008710 176 ELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (557)
Q Consensus 176 e~Al~LL~~Ll~~~~~~~~~~~~~~~l--~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~ 253 (557)
..|+..|..+..... +. .+.+ ..+++.+..-+.......+.++|..|..+.... +....... .
T Consensus 317 ~~a~~~L~~l~~~~~-~~-----~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~--------~ 381 (530)
T 1wa5_B 317 TPALRAVGNIVTGND-LQ-----TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVI--------D 381 (530)
T ss_dssp HHHHHHHHHHTTSCH-HH-----HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHH--------H
T ss_pred HHHHHHHHHHHcCCH-HH-----HHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHH--------H
Confidence 677788777765431 10 0111 124455555555555677788888888877543 21111110 1
Q ss_pred HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhh
Q 008710 254 MYMRVGVVAILQNRVAPAEKLQALILAESIVSI 286 (557)
Q Consensus 254 ~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l 286 (557)
..+...|..+|++. .+.-|..|+.....+...
T Consensus 382 ~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 382 ANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413 (530)
T ss_dssp TTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 12234566667654 455566666666666554
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.86 E-value=0.029 Score=59.45 Aligned_cols=131 Identities=15% Similarity=0.219 Sum_probs=101.5
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|++.+++-++.+.--+++++.. +.+....|.++=|.+.|-+||+++ ....+.-|+..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~s~-------------~~~~~~~A~~aL 68 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSP-------------NQNVQQAAAGAL 68 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSS-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHHHHHHHH
Confidence 578899999999999999999999999974 333445677777778888999874 223467788888
Q ss_pred HHhcCC-ccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHH
Q 008710 97 AAFCRV-PEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQM 165 (557)
Q Consensus 97 a~F~~~-pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i 165 (557)
..++.. |+.- ..+ .+-||.|++.+..+++..+...+..+|..++ ..++.+..+++ |+++.+..-+
T Consensus 69 ~nLa~~~~~~k--~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa-~~~~~~~~i~~-g~i~~Lv~ll 136 (457)
T 1xm9_A 69 RNLVFRSTTNK--LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS-STDELKEELIA-DALPVLADRV 136 (457)
T ss_dssp HHHHSSCHHHH--HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH-TSSSTHHHHHH-HHHHHHHHHT
T ss_pred HHHhcCCHHHH--HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHh-cCHHhHHHHHh-ccHHHHHHHH
Confidence 888874 5543 222 2568999999985566677799999999998 57888888888 9999986554
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.71 E-value=0.048 Score=55.76 Aligned_cols=215 Identities=12% Similarity=0.053 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCCCCCc--cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHh-cCcchHHHHHhcCCCCCCC
Q 008710 1 MDYRSHSQPEESAPSP--SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDA-VGPRFLDRLLRTGLGKGIN 77 (557)
Q Consensus 1 ~~~~~~~~p~~~~~~~--~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~A-ig~~FL~RLL~T~~~~~~~ 77 (557)
|.+++..+-+.+-... .+...++.|++.+.+.|..++-.+.+++.......++.+.++ -..+.|-++|+++
T Consensus 3 ~~~~~~~~~~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~------ 76 (450)
T 2jdq_A 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK------ 76 (450)
T ss_dssp -------------------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT------
T ss_pred CcccchhhhHHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC------
Confidence 3444443333332333 378888899888888899999999998642111123445554 2234445555542
Q ss_pred CCCCCcchHHHHHHHHHHHHHhcC-CccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhh
Q 008710 78 SGNSSENRDAYLQLSVTVLAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYE 154 (557)
Q Consensus 78 ~~~~~~~~~~~~~LavsvLa~F~~-~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~ 154 (557)
+....+.-|..+|..++. .++... .+ .+-||.|++.+.. ++..+...|..+|..++...++.++.+++
T Consensus 77 ------~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 147 (450)
T 2jdq_A 77 ------ENCTLQFESAWVLTNIASGNSLQTR--IVIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLD 147 (450)
T ss_dssp ------TCHHHHHHHHHHHHHHHSSCHHHHH--HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhcCCHHHHH--HHHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 123346677888888886 444321 12 2467999999875 45566788999999997444567788889
Q ss_pred cCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhcc
Q 008710 155 SGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (557)
Q Consensus 155 ~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~ 234 (557)
.|+++.+...+.. .....-...|+..|..+....++..-. .-...+++.+..-+.......+..++..|..+...
T Consensus 148 ~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~----~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 148 CNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEF----AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp TTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCG----GGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCH----HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 9999998554431 122334567777777776543111111 11123444455544444456667778888777654
Q ss_pred c
Q 008710 235 N 235 (557)
Q Consensus 235 ~ 235 (557)
.
T Consensus 223 ~ 223 (450)
T 2jdq_A 223 P 223 (450)
T ss_dssp S
T ss_pred C
Confidence 3
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.66 E-value=0.16 Score=53.08 Aligned_cols=232 Identities=11% Similarity=0.104 Sum_probs=138.1
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+...+++|+..+++-+..++-.+.+++..++ +..+.+.++=+.+-|-++|+++ ....+..+...|
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~-------------~~~~~~~~~~~L 167 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT-------------NVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCC-------------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcC-------------CHHHHHHHHHHH
Confidence 45666777777776777777777777776432 2244444554456666666653 123456666677
Q ss_pred HHhcC-CccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 97 AAFCR-VPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 97 a~F~~-~pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
..++. .|+... .++ +-||.|++.+...+++.....+..+|..++ .+++....+++.|+++.+...+.. ....
T Consensus 168 ~~la~~~~~~~~--~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~g~~~~L~~ll~~--~~~~ 242 (529)
T 1jdh_A 168 QILAYGNQESKL--IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTD--PSQR 242 (529)
T ss_dssp HHHHTTCHHHHH--HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSTTHHHHHHHTTHHHHHHTTTTS--SCHH
T ss_pred HHHHhCCHHHHH--HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhC--CChH
Confidence 77776 344321 111 458999999987776666677888999997 688999999999999997543331 2222
Q ss_pred hHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchh
Q 008710 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (557)
Q Consensus 174 ~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~ 253 (557)
-...|+..|..|-.... . . + ....+++.+.+-......+.+..+|..|..+-... +..... .+.
T Consensus 243 ~~~~a~~~L~~l~~~~~-~-~--~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~--------~~~ 306 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAAT-K-Q--E---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN-YKNKMM--------VCQ 306 (529)
T ss_dssp HHHHHHHHHHHHHTTCT-T-C--S---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC-HHHHHH--------HHH
T ss_pred HHHHHHHHHHHHhcCCh-h-h--H---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHH--------HHH
Confidence 34556666666554331 1 1 1 12345666666555556677788888888886543 111111 111
Q ss_pred HHHHHHHHHHHhcC-CChhhhhhHHHHHHHH
Q 008710 254 MYMRVGVVAILQNR-VAPAEKLQALILAESI 283 (557)
Q Consensus 254 ~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~l 283 (557)
.....-|..+|++. -.+.-|.+|+.....+
T Consensus 307 ~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 307 VGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 12334456666553 2355666666655554
No 20
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.60 E-value=0.19 Score=56.38 Aligned_cols=251 Identities=16% Similarity=0.196 Sum_probs=162.6
Q ss_pred CccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHh-cCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 008710 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDA-VGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (557)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~A-ig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (557)
...+.--+.+|+..+=.-|+-++=+++-++.+.....-+.|.++ .|..=|=.+|.. +++.-+.-|+
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-------------~rE~iRneal 187 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-------------SREVIRNDGV 187 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-------------SSHHHHHHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-------------chHHHHHHHH
Confidence 34566668888888888899999999999998666667777765 565555555544 2688899999
Q ss_pred HHHHHhcC-CccccCCcchhc---chhHHHHHhhccc---ccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHh
Q 008710 94 TVLAAFCR-VPEIASSEDMVS---KVPPILELMLKES---GTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMS 166 (557)
Q Consensus 94 svLa~F~~-~pe~A~~~~~v~---~IP~l~~~l~~~~---~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~ 166 (557)
.+|...++ .+++- +++. -+|.|.+++.... +..+++||+.+|..++...+.-+..|.|.|.+++++ .+.
T Consensus 188 lLL~~Lt~~n~~iQ---klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~-~LL 263 (651)
T 3grl_A 188 LLLQALTRSNGAIQ---KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK-PWF 263 (651)
T ss_dssp HHHHHHHTTCHHHH---HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGG-GGG
T ss_pred HHHHHHhcCCHHHH---HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH-HHh
Confidence 99999997 55553 4443 4899999997543 356789999999999744445788899999999984 333
Q ss_pred hcccC-cch-------HHHHHHHHHHHHhhcccccccccChhhHHH--HHHHHHH-HHh-hhcchhhHHHHHHHHHhhcc
Q 008710 167 TFADG-SRL-------MELAIRLLQLMLSKLSLEIITNDYLSELST--IVTVVAR-EFA-VLHNALKFESLHLLTAVLSS 234 (557)
Q Consensus 167 ~~~~~-s~~-------~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~--lv~~la~-~F~-~~~~~~Kfe~~~~L~~lL~~ 234 (557)
...++ ..+ .-.+++++..|++.-+..+-...+...+.. ++..+.+ -|. ......|-+++..++.+...
T Consensus 264 ~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irg 343 (651)
T 3grl_A 264 EVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRG 343 (651)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhC
Confidence 21121 111 123667777777764321111122222221 3333434 222 22467788999999998877
Q ss_pred chhhhHHHHhhcC--CccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHH
Q 008710 235 NYSALLHEALRVM--PDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIV 284 (557)
Q Consensus 235 ~~~~~~~~~~~~~--~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll 284 (557)
. ....+..... |..-=...+...|..++.++-+...|-.|+....|.+
T Consensus 344 N--~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 344 C--QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp C--HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 5 2333322221 1111123466777888889989999988888777765
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.59 E-value=0.13 Score=55.37 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=98.9
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 008710 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (557)
Q Consensus 18 l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (557)
+..-+++|++.+++-+-.+.-.+..+...+|.+.+..|-++=|.+.|-+||... . ....+.-|+..|.
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s--~----------~~~v~~~A~~aL~ 312 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--K----------KESTLKSVLSALW 312 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC--C----------SHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC--C----------CHHHHHHHHHHHH
Confidence 555566666655555555555555655544555566677766667777765442 0 1234556777777
Q ss_pred HhcC-CccccCCcchh---cchhHHHHHhhccccc---chHHHHHHHHHHHHh---cCchhhhHhhhcCChHHHHHHHhh
Q 008710 98 AFCR-VPEIASSEDMV---SKVPPILELMLKESGT---SILEECYEFLYLVTN---ATGDGVTTLYESGGMKVLAFQMST 167 (557)
Q Consensus 98 ~F~~-~pe~A~~~~~v---~~IP~l~~~l~~~~~~---~~~~~~~~~L~~ia~---a~~~G~~~l~~~g~i~~l~~~i~~ 167 (557)
.++. .++.- ++++ +-||.|++.+...++. .+..++.-+|..++. ..++..+.+.+.|+++.|..-+.
T Consensus 313 nLs~~~~~nk--~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~- 389 (458)
T 3nmz_A 313 NLSAHCTENK--ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK- 389 (458)
T ss_dssp HHHHHCHHHH--HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSS-
T ss_pred HHccCCHHHH--HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHc-
Confidence 7776 44432 3333 5789999999876653 467899999988862 37888999999999999855433
Q ss_pred cccCc-chHHHHHHHHHHHHh
Q 008710 168 FADGS-RLMELAIRLLQLMLS 187 (557)
Q Consensus 168 ~~~~s-~~~e~Al~LL~~Ll~ 187 (557)
+++ .-.+.|...|..|-.
T Consensus 390 --~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 390 --SHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp --CSCHHHHHHHHHHHHHHHS
T ss_pred --CCChHHHHHHHHHHHHHHc
Confidence 333 234667777776653
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.59 E-value=0.39 Score=50.79 Aligned_cols=236 Identities=11% Similarity=0.108 Sum_probs=145.9
Q ss_pred ccHHHHHHHhccCC-chhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 16 PSLDDCLKLLKGER-DEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 16 ~~l~~cl~lLk~~~-D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
..+...+++|+..+ .+-|+.++--++++... +.+....+.++=+...|-+||.++ ....+.-|+.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~-------------~~~v~~~a~~ 182 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASG-TSENTKVVIDHGAVPIFVKLLGSS-------------SDDVREQAVW 182 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHhCCcHHHHHHHhcCC-------------CHHHHHHHHH
Confidence 35778888998775 78899999999999884 455566677665557777788763 2355778888
Q ss_pred HHHHhcCCccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCc
Q 008710 95 VLAAFCRVPEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS 172 (557)
Q Consensus 95 vLa~F~~~pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s 172 (557)
.|..+|.+..-.+ ..++ +-||.|+..+....+..+...+..+|..++ ............|+++.+...+. ....
T Consensus 183 aL~~l~~~~~~~~-~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~l~~L~~lL~--~~~~ 258 (528)
T 4b8j_A 183 ALGNVAGDSPKCR-DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC-RGKPQPSFEQTRPALPALARLIH--SNDE 258 (528)
T ss_dssp HHHHHHHTCHHHH-HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH-CSSSCCCHHHHTTHHHHHHHHTT--CCCH
T ss_pred HHHHHhCCChhhH-HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHC--CCCH
Confidence 8888886432211 1222 368999999976677777899999999997 35444555566889999755443 2223
Q ss_pred chHHHHHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCcc
Q 008710 173 RLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDS 250 (557)
Q Consensus 173 ~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~ 250 (557)
.-...|+..|..+..... + ..+.+. .+++.|..-........+..++..|..+.... +.......
T Consensus 259 ~v~~~a~~aL~~l~~~~~-~-----~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~------ 325 (528)
T 4b8j_A 259 EVLTDACWALSYLSDGTN-D-----KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGD-DAQTQCII------ 325 (528)
T ss_dssp HHHHHHHHHHHHHTSSCH-H-----HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCH-H-----HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCC-HHHHHHHH------
Confidence 334556666665543321 1 011111 14455555555555677888888888887654 11111111
Q ss_pred chhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHH
Q 008710 251 KWSMYMRVGVVAILQNRVAPAEKLQALILAESIV 284 (557)
Q Consensus 251 ~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll 284 (557)
...+..-|..+|++.-.+.-|..|......+.
T Consensus 326 --~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~ 357 (528)
T 4b8j_A 326 --DHQALPCLLSLLTQNLKKSIKKEACWTISNIT 357 (528)
T ss_dssp --TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred --HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 11233456677776545555656655555544
No 23
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.48 E-value=0.11 Score=52.66 Aligned_cols=155 Identities=12% Similarity=0.082 Sum_probs=108.4
Q ss_pred cHHHHHH-HhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 17 SLDDCLK-LLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 17 ~l~~cl~-lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
.+...+. +|++.+..=|-.+.-.+.++..+ +....+.+.+.=|.+-|-+||++. + ....+.=|+..
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~Ll~LL~~~--------~----~~~v~~~A~~A 148 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRD--------A----CDTVRVKALFA 148 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHC--------S----CHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHccC--------C----CHHHHHHHHHH
Confidence 3555666 77776666666677777777664 444455666665667777888863 1 24567888899
Q ss_pred HHHhcC-CccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCc
Q 008710 96 LAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGS 172 (557)
Q Consensus 96 La~F~~-~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s 172 (557)
|+.+|+ .|+.. ..+ .+-||.|+..+.. ++..+-.++.-+|..++...++-.+.+++.|+++.|+.-+. ....
T Consensus 149 Lsnl~~~~~~~~--~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~--~~d~ 223 (296)
T 1xqr_A 149 ISCLVREQEAGL--LQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR--TEHS 223 (296)
T ss_dssp HHHHHTTCHHHH--HHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT--SCCS
T ss_pred HHHHHcCCcHHH--HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc--CCCh
Confidence 999997 44422 112 2468999999876 45566789999998886556778889999999999865444 2334
Q ss_pred chHHHHHHHHHHHHhhc
Q 008710 173 RLMELAIRLLQLMLSKL 189 (557)
Q Consensus 173 ~~~e~Al~LL~~Ll~~~ 189 (557)
.-.+.|+..|..++...
T Consensus 224 ~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 224 PFHEHVLGALCSLVTDF 240 (296)
T ss_dssp THHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCC
Confidence 55788999999988773
No 24
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.41 E-value=0.46 Score=54.73 Aligned_cols=239 Identities=14% Similarity=0.118 Sum_probs=150.2
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+.--+++|++.+..-|.-+.-.+.++. .|.+.+..|.++=+.+.|-+||+++. ..-+..|...|
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA--~d~~~r~~Vv~~Gaip~Lv~LL~s~~-------------~~~k~~Aa~AL 560 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGT-------------EKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHHHHSSC-------------HHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHccCC-------------HHHHHHHHHHH
Confidence 3555677888877777777777788886 46667788888867799999999861 12367777777
Q ss_pred HHhc--CCccccCC-cchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 97 AAFC--RVPEIASS-EDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 97 a~F~--~~pe~A~~-~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
+-+| .+|+.+.. ....+-||.|++.+...++.....+++.+|..++...++..+.+++.|+++.+..-+.. +...
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s--~~~~ 638 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME--DHLY 638 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS--CCTT
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHH
Confidence 7766 47877643 34567899999998743333333589999999974335678888999999998554442 3334
Q ss_pred hHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchh
Q 008710 174 LMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS 253 (557)
Q Consensus 174 ~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~ 253 (557)
-...|..+|..|......-....+... .++.|-.-........|-++|..|+.+-... +....... ....|.
T Consensus 639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g----~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii---~~~g~I 710 (810)
T 3now_A 639 LTRAAAQCLCNLVMSEDVIKMFEGNND----RVKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKIL---AIASWL 710 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHSSSS----HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHH---TSTTHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhccC----cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHH---HHcCCH
Confidence 467799999988875321000011111 2223333223344567777888888777632 12222211 113443
Q ss_pred HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 008710 254 MYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (557)
Q Consensus 254 ~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (557)
.-|..+|++. ..+-|..|+....++..
T Consensus 711 ----~~Lv~LL~s~-d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 711 ----DILHTLIANP-SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp ----HHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence 2355677763 55666667766666655
No 25
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.01 E-value=0.091 Score=58.34 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=107.0
Q ss_pred CCCCCCCCCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcch
Q 008710 6 HSQPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENR 85 (557)
Q Consensus 6 ~~~p~~~~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~ 85 (557)
++..++.-.+..+...+++|++.+++-++.+..-+++++.. +.+..+.|.++=|...|-+||+++ .
T Consensus 38 ~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~-~~~~k~~V~~~G~Ip~LV~LL~s~-------------~ 103 (584)
T 3l6x_A 38 GGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR-NDKVKTDVRKLKGIPVLVGLLDHP-------------K 103 (584)
T ss_dssp --CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHGGGCS-------------S
T ss_pred cCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHcCCcHHHHHHHCCC-------------C
Confidence 34456667888999999999998888899888889999874 566678888887789999999985 2
Q ss_pred HHHHHHHHHHHHHhcC--CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHH
Q 008710 86 DAYLQLSVTVLAAFCR--VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAF 163 (557)
Q Consensus 86 ~~~~~LavsvLa~F~~--~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~ 163 (557)
..-+.-|+..|..++. +++.-..=-=.+-||.|++.+....+..+.+.+..+|..++ ..++....+++ ++++.|..
T Consensus 104 ~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS-~~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 104 KEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLS-SHDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHT-TSGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCchhhHHHHh-ccHHHHHH
Confidence 3457778888888886 24432100112458999999987655555688888999997 58887777775 56888755
Q ss_pred HH
Q 008710 164 QM 165 (557)
Q Consensus 164 ~i 165 (557)
-+
T Consensus 182 LL 183 (584)
T 3l6x_A 182 EV 183 (584)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 26
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.46 E-value=1.1 Score=48.05 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=98.2
Q ss_pred HHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCCccccCCc-chhcchhHHHHHhhcccccch
Q 008710 52 LRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSE-DMVSKVPPILELMLKESGTSI 130 (557)
Q Consensus 52 ~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~~pe~A~~~-~~v~~IP~l~~~l~~~~~~~~ 130 (557)
...|.++=+..-|-+||.... .......++.-+...|+.+|+..+-...- .+-.-+|.|+..+... +..+
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~--------~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v 267 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPD--------LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEV 267 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSC--------GGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHH
T ss_pred HHHHHHcCCcHHHHHHHhccc--------hhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHH
Confidence 334444444455555555431 11224456777888889999855444332 2344578899888654 4455
Q ss_pred HHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHH--HHHHH
Q 008710 131 LEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTV 208 (557)
Q Consensus 131 ~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~ 208 (557)
..+++.+|..++...++-.+.+.+.|+++.+..-+. .....-...|+..|..+.+.-. .. ...+. ..++.
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~-~~-----~~~i~~~g~l~~ 339 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTD-EQ-----TQKVIDAGALAV 339 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCH-HH-----HHHHHHTTGGGG
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--CCChhHHHHHHHHHHHHHccch-HH-----HHHHhhcccHHH
Confidence 689999998886434445566678999999855443 2223345667888887765431 10 00000 12233
Q ss_pred HHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 209 VAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 209 la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
+..-........|-++|..|..+....
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~ 366 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGR 366 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhccc
Confidence 334344556677888888888887654
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.28 E-value=0.12 Score=50.65 Aligned_cols=134 Identities=10% Similarity=0.138 Sum_probs=96.6
Q ss_pred CCCccHHHHHHHhccCCc--hhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 008710 13 APSPSLDDCLKLLKGERD--EQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (557)
Q Consensus 13 ~~~~~l~~cl~lLk~~~D--~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (557)
+...++...+++|++.++ .-++.+..-++.++.. +.+..+.|.++=|.+.|-+||+++ ...-+.
T Consensus 5 ~~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~-------------~~~vq~ 70 (233)
T 3tt9_A 5 DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQ-------------NEDVQR 70 (233)
T ss_dssp CCCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCC-------------CHHHHH
T ss_pred chhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCC-------------CHHHHH
Confidence 456689999999998876 4456666677777763 566677888887779999999885 234567
Q ss_pred HHHHHHHHhcC-CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHH
Q 008710 91 LSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLA 162 (557)
Q Consensus 91 LavsvLa~F~~-~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~ 162 (557)
-|+..|..++. .++--..=--.+-||.|++.+.++.+..+-+.+.-+|..++ +.++....+.+. +++.|+
T Consensus 71 ~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS-~~~~~k~~i~~~-~i~~Lv 141 (233)
T 3tt9_A 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS-SNDKLKNLMITE-ALLTLT 141 (233)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-TSGGGHHHHHHH-HHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH-cChhhHHHHHhc-cHHHHH
Confidence 78888888886 44432111113568999999986555566688888999997 688888777764 577763
No 28
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.18 E-value=0.41 Score=50.58 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=111.7
Q ss_pred ccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHh-cCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 16 PSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLR-TGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 16 ~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~-T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
..+..-+++|++.+.+-++.+.--++++... +.+....|.++=|.+.|-+||+ ++ ....+.-|+.
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i~~Lv~lL~~~~-------------~~~~~~~a~~ 109 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGIREAVSLLRRTG-------------NAEIQKQLTG 109 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHHHTTCC-------------CHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHhhCC-------------CHHHHHHHHH
Confidence 3577889999988888889999999999884 4566777888888899999998 53 2345778889
Q ss_pred HHHHhcCCccccCCcchhcchhHHHHHhhc--------c-------cccchHHHHHHHHHHHHhcCchhhhHhhhc-CCh
Q 008710 95 VLAAFCRVPEIASSEDMVSKVPPILELMLK--------E-------SGTSILEECYEFLYLVTNATGDGVTTLYES-GGM 158 (557)
Q Consensus 95 vLa~F~~~pe~A~~~~~v~~IP~l~~~l~~--------~-------~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~-g~i 158 (557)
.|..+|..|+.- ..=+-+-||.|++.+.. . .+..+...|.-+|..++ ..++.++.+.+. |++
T Consensus 110 aL~nLa~~~~~~-~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs-~~~~~~~~i~~~~g~i 187 (457)
T 1xm9_A 110 LLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS-SADAGRQTMRNYSGLI 187 (457)
T ss_dssp HHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHT-TSHHHHHHHTTSTTHH
T ss_pred HHHHHhcCHHhH-HHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHc-cCHHHHHHHHHcCCCH
Confidence 999999875532 11111678999999932 1 23456678999999998 568888888887 999
Q ss_pred HHHHHHHhhc----ccCcchHHHHHHHHHHHHhh
Q 008710 159 KVLAFQMSTF----ADGSRLMELAIRLLQLMLSK 188 (557)
Q Consensus 159 ~~l~~~i~~~----~~~s~~~e~Al~LL~~Ll~~ 188 (557)
+.|..-+..- .......+.|+.+|..|-.+
T Consensus 188 ~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 221 (457)
T 1xm9_A 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221 (457)
T ss_dssp HHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence 9986555420 01123456666666655443
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.01 E-value=1 Score=49.35 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=96.6
Q ss_pred cHHHHHHHhccC-CchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 17 ~l~~cl~lLk~~-~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
.+...+++|+.. +.+-+..+...+.++... .+....+++.=+..-|-++|+++ ....+..|+..
T Consensus 57 ~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~-------------~~~v~~~A~~a 121 (644)
T 2z6h_A 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSP-------------VDSVLFYAITT 121 (644)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCS-------------SHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCC-------------CHHHHHHHHHH
Confidence 466777777754 545555666666677664 34667777764446666676653 23557788888
Q ss_pred HHHhcCCccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710 96 LAAFCRVPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR 173 (557)
Q Consensus 96 La~F~~~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~ 173 (557)
|..++..++-.. ..+ .+-||.|++.+...+. ....-+..+|..++...++..+.+.+.|+++.+...+.. .+...
T Consensus 122 L~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~ 198 (644)
T 2z6h_A 122 LHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEK 198 (644)
T ss_dssp HHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT-CCCHH
T ss_pred HHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCH-HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc-CChHH
Confidence 888887543221 112 3568999999976543 444666788988874478889999999999998665542 22122
Q ss_pred hHHHHHHHHHHHH
Q 008710 174 LMELAIRLLQLML 186 (557)
Q Consensus 174 ~~e~Al~LL~~Ll 186 (557)
-...+..+|..|-
T Consensus 199 ~~~~a~~~L~nLs 211 (644)
T 2z6h_A 199 LLWTTSRVLKVLS 211 (644)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 2345566655553
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=93.77 E-value=0.42 Score=49.89 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=93.9
Q ss_pred cHHHHHHHhccCCch-hHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDE-QRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTV 95 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~-~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavsv 95 (557)
.+...+++|+..+++ -+.++.-++.++.... +....+.++=+.+.|-++|.++ ....+.-++.+
T Consensus 186 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~~~~L~~ll~~~-------------~~~~~~~a~~~ 250 (529)
T 1jdh_A 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDP-------------SQRLVQNCLWT 250 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST--THHHHHHHTTHHHHHHTTTTSS-------------CHHHHHHHHHH
T ss_pred CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhCC-------------ChHHHHHHHHH
Confidence 355666677755433 3344555566666532 2334444443334444444332 23446667888
Q ss_pred HHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchH
Q 008710 96 LAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLM 175 (557)
Q Consensus 96 La~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~ 175 (557)
|..+|+.+.-. ..+-+-||.|++.+.. .+..+...+..+|..++...++..+.+.+.|+++.+...+....+...-.
T Consensus 251 L~~l~~~~~~~--~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 251 LRNLSDAATKQ--EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHTTCTTC--SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCChhh--HHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 99999754221 2334668999998854 45566788999999996444678999999999999865554211222344
Q ss_pred HHHHHHHHHHHhh
Q 008710 176 ELAIRLLQLMLSK 188 (557)
Q Consensus 176 e~Al~LL~~Ll~~ 188 (557)
+.|+..|..|...
T Consensus 328 ~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 328 EPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcC
Confidence 6788888877443
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.71 E-value=0.73 Score=49.24 Aligned_cols=199 Identities=12% Similarity=0.138 Sum_probs=108.8
Q ss_pred HHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 008710 19 DDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAA 98 (557)
Q Consensus 19 ~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~ 98 (557)
..-+++|++.+++-|-.++--+.++.. ++.+....+.++=+...|-+||.... .......++.-+...|+.
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~-d~~~~r~~v~~~G~i~~Ll~lL~~~~--------~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIAG-DGSAFRDLVIKHGAIDPLLALLAVPD--------LSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHHTCSSC--------GGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHcCChHHHHHHHHhcc--------chhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444432 12223334444445566777776541 112344566777888888
Q ss_pred hcCCccccCCc-chhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHH
Q 008710 99 FCRVPEIASSE-DMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMEL 177 (557)
Q Consensus 99 F~~~pe~A~~~-~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~ 177 (557)
+|+..+-...- .+-.-+|.|+..+... +..+..+++.+|..++...++..+.+.+.|+++.+..-+.. ....-...
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~ 293 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTP 293 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhH
Confidence 98855444322 2344578898888654 44557899999998864344555667789999998554432 22233456
Q ss_pred HHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 178 AIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 178 Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
|+..|..+.+... .. ...+. ..++.+..-........|-++|..|..+....
T Consensus 294 al~aL~nl~~~~~-~~-----~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~ 347 (510)
T 3ul1_B 294 ALRAIGNIVTGTD-EQ-----TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347 (510)
T ss_dssp HHHHHHHHTTSCH-HH-----HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCCH-HH-----HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 7777777765431 00 00000 01122222223344566777888888777654
No 32
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.33 E-value=2.8 Score=43.17 Aligned_cols=223 Identities=12% Similarity=0.130 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcC-cchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCC--ccccCCc
Q 008710 33 RLAGLLVVTKFCKGDDAVSLRKIYDAVG-PRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRV--PEIASSE 109 (557)
Q Consensus 33 kfagLlLvtkl~~~~d~~~~~~v~~Aig-~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~~--pe~A~~~ 109 (557)
|+.+.--+++++.+ +.+..+.|-..=| .+.|-+||+++ ....+.-|+..|..++.. ++.- .
T Consensus 101 q~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s~-------------~~~v~~~A~~aL~nLs~~~~~~~k--~ 164 (354)
T 3nmw_A 101 RRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSE-------------SEDLQQVIASVLRNLSWRADVNSK--K 164 (354)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHHCHHHHHHHHHGGGCS-------------CHHHHHHHHHHHHHHHTTCCHHHH--H
T ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHcCCcHHHHHHHHCCC-------------CHHHHHHHHHHHHHHhccCCHHHH--H
Confidence 44455556777764 3333444444456 68888899874 223466677788877753 3211 1
Q ss_pred chh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhh-hcCChHHHHHHHhhcccCc---chHHHHHHHHH
Q 008710 110 DMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLY-ESGGMKVLAFQMSTFADGS---RLMELAIRLLQ 183 (557)
Q Consensus 110 ~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~-~~g~i~~l~~~i~~~~~~s---~~~e~Al~LL~ 183 (557)
.++ +-||.|++.+.++.+..+...+..+|..++...++.+..+. ..|+++.|..-+.. .+.+ .-.+.|...|.
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~-~~~~~~~~v~~~A~~aL~ 243 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILR 243 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc-CCCcccHHHHHHHHHHHH
Confidence 222 45899999987666666678899999999721445666776 78999998554432 2211 13566777776
Q ss_pred HHHhh--cccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhHHHHHH
Q 008710 184 LMLSK--LSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVG 259 (557)
Q Consensus 184 ~Ll~~--~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~G 259 (557)
.|-.. .+.+ +.+.+. ..++.|-..........|-+++..|..+-... +..... ........-
T Consensus 244 nLs~~~a~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~--------i~~~G~i~~ 309 (354)
T 3nmw_A 244 NVSSLIATNED-----HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEA--------LWDMGAVSM 309 (354)
T ss_dssp HHHHHHTTCHH-----HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHH--------HHHTTHHHH
T ss_pred HHHhhccCCHH-----HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHH--------HHHCCCHHH
Confidence 65431 1111 111111 13444444444444566777788777775332 111111 011112233
Q ss_pred HHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 008710 260 VVAILQNRVAPAEKLQALILAESIVSIK 287 (557)
Q Consensus 260 L~~IL~skv~~~qR~~aL~Laa~ll~l~ 287 (557)
|..+|+++ .++.|..|......+...-
T Consensus 310 Lv~LL~s~-~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 310 LKNLIHSK-HKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHTTTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 44455554 3444555555555555543
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=93.33 E-value=2.9 Score=47.35 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=98.2
Q ss_pred CCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHH
Q 008710 14 PSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSV 93 (557)
Q Consensus 14 ~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lav 93 (557)
....+...+++|+..+.+-|-.+...+.++..+ +.+..+.+.++-|...|-++|.... +...-+.-|+
T Consensus 397 ~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~-----------~~~~v~~~Al 464 (780)
T 2z6g_A 397 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAG-----------DREDITEPAI 464 (780)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHT-----------TCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccC-----------CHHHHHHHHH
Confidence 345677778888888888888888888898875 4455677777777777778887631 1224456667
Q ss_pred HHHHHhcC-Ccccc-CCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHH
Q 008710 94 TVLAAFCR-VPEIA-SSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQM 165 (557)
Q Consensus 94 svLa~F~~-~pe~A-~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i 165 (557)
..|..++. .|+.. ....+ ..-||.|++.+...++..+...|+.+|..++ ..++.+..+.+.|+++.|...+
T Consensus 465 ~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~Lv~lL 539 (780)
T 2z6g_A 465 CALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLL 539 (780)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHH-SSHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHH
Confidence 77777775 34311 00011 2348999999987666577899999999997 5888888888999999985544
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=92.78 E-value=3.1 Score=47.91 Aligned_cols=237 Identities=17% Similarity=0.116 Sum_probs=136.1
Q ss_pred HHHHHHHhccC--CchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCc-chHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 008710 18 LDDCLKLLKGE--RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGP-RFLDRLLRTGLGKGINSGNSSENRDAYLQLSVT 94 (557)
Q Consensus 18 l~~cl~lLk~~--~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~-~FL~RLL~T~~~~~~~~~~~~~~~~~~~~Lavs 94 (557)
+..|.++|.+. +++.+=-+.--+..+.. +.+....+-..-|+ +-|=.||+++ . ...+--|++
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~LL~s~-----------d--~~i~~~al~ 443 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDLARGG-----------N--QSCLYGVVT 443 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHHHHTT-----------C--GGGHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHHhCCC-----------C--hHHHHHHHH
Confidence 66688888865 54444444444444443 34444443322221 3333444442 1 123556788
Q ss_pred HHHHhcCCcc----------ccC--C-----------cc-hh---------cchhHHHHHhhcccccchHHHHHHHHHHH
Q 008710 95 VLAAFCRVPE----------IAS--S-----------ED-MV---------SKVPPILELMLKESGTSILEECYEFLYLV 141 (557)
Q Consensus 95 vLa~F~~~pe----------~A~--~-----------~~-~v---------~~IP~l~~~l~~~~~~~~~~~~~~~L~~i 141 (557)
+|.-+++.+| +|. + ++ +. +-||.|+..+.+.+ ..+-+.|..+|..+
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s-~~vqe~Aa~aL~NL 522 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQELIARVLNAV 522 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 8999987432 111 0 11 11 34799999997644 55569999999999
Q ss_pred HhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcc-hh
Q 008710 142 TNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHN-AL 220 (557)
Q Consensus 142 a~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~-~~ 220 (557)
| ..++.+..+++.|+++.|...+.. ......+.|..-|..|....+++..+.. +.....++.|........+ ..
T Consensus 523 A-~d~~~r~~Vv~~Gaip~Lv~LL~s--~~~~~k~~Aa~AL~nL~~~~~p~~~~~~--~~~~~aIppLv~LL~~~~~~l~ 597 (810)
T 3now_A 523 C-GLKELRGKVVQEGGVKALLRMALE--GTEKGKRHATQALARIGITINPEVSFSG--QRSLDVIRPLLNLLQQDCTALE 597 (810)
T ss_dssp H-TSHHHHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHTTT--HHHHHTHHHHHHTTSTTSCHHH
T ss_pred c-CCHHHHHHHHHCCCHHHHHHHHcc--CCHHHHHHHHHHHHHHhcCCChhhhhcc--hhhhcHHHHHHHHhCCCCcHHH
Confidence 8 688899999999999998665542 2223457787878777765543333211 1123355666554433323 34
Q ss_pred hHHHHHHHHHhhccchhhhHHHHhhcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 008710 221 KFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (557)
Q Consensus 221 Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (557)
+|++|..|.-+....+ ....... ....| .-|..+|.+. .+.-|.+|+.+...|+.
T Consensus 598 ~~eAl~AL~NLa~~~d-~~~~~Ii---~aG~l-----~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 598 NFESLMALTNLASMNE-SVRQRII---KEQGV-----SKIEYYLMED-HLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp HHHHHHHHHHHTTSCH-HHHHHHH---HTTHH-----HHHHHHHHSC-CTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHH---HcCCH-----HHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 6899998888887641 1111111 11234 3366667765 34556677777666653
No 35
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=92.04 E-value=1.2 Score=49.30 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=111.4
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+..-+++|++.+.+-++.+.--+.++...++.+....|-++=|..-|-+||+++ + ....+.-+...|
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~--~----------~~~~~e~aa~aL 158 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA--R----------DMDLTEVITGTL 158 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC--C----------SHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC--C----------CHHHHHHHHHHH
Confidence 4677789999998889999999999999866677788888887779999999984 1 234577788888
Q ss_pred HHhcCCccccCCcchhcchhHHHHHhh-----------------cccccchHHHHHHHHHHHHhcCchhhhHhhhc-CCh
Q 008710 97 AAFCRVPEIASSEDMVSKVPPILELML-----------------KESGTSILEECYEFLYLVTNATGDGVTTLYES-GGM 158 (557)
Q Consensus 97 a~F~~~pe~A~~~~~v~~IP~l~~~l~-----------------~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~-g~i 158 (557)
..++..|+.-. .=+-+-||.|++.+. ..+++.+...|..||..++...+++++.+.+. |++
T Consensus 159 ~nLS~~~~~k~-~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 159 WNLSSHDSIKM-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp HHHTTSGGGHH-HHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred HHHhCCchhhH-HHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 88888665321 011234899999762 12245677889999999975566789999874 556
Q ss_pred HHHHHHHhhc----ccCcchHHHHHHHHHHHHhhc
Q 008710 159 KVLAFQMSTF----ADGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 159 ~~l~~~i~~~----~~~s~~~e~Al~LL~~Ll~~~ 189 (557)
+.|...+... .......+-|+-.|..|-.+.
T Consensus 238 ~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~ 272 (584)
T 3l6x_A 238 DALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272 (584)
T ss_dssp HHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence 6775544321 012234566676666665553
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=92.03 E-value=0.62 Score=45.64 Aligned_cols=158 Identities=14% Similarity=0.120 Sum_probs=105.9
Q ss_pred cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710 17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL 96 (557)
Q Consensus 17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL 96 (557)
.+..-+++|++.+++-++.+.--++++.. ++.+....|-++=|.+-|-+||++. + ....+.-|++.|
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~-~~~~nk~~I~~~GaI~~Lv~lL~~~--~----------~~~~~e~a~~aL 119 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVF-EDNDNKLEVAELNGVPRLLQVLKQT--R----------DLETKKQITGLL 119 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHC--C----------CHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHcCCHHHHHHHHccC--C----------CHHHHHHHHHHH
Confidence 46667888888888888888888888876 3456677888887779999999853 1 223567788888
Q ss_pred HHhcCCccccCCcch-hcchhHHHHHhh---cc------------cccchHHHHHHHHHHHHhcCchhhhHhhhc-CChH
Q 008710 97 AAFCRVPEIASSEDM-VSKVPPILELML---KE------------SGTSILEECYEFLYLVTNATGDGVTTLYES-GGMK 159 (557)
Q Consensus 97 a~F~~~pe~A~~~~~-v~~IP~l~~~l~---~~------------~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~-g~i~ 159 (557)
..++..++.- +.+ -+-||.|++.+. .+ .+..+...+-.||..++.+.+++++.+.+. |.|+
T Consensus 120 ~nLS~~~~~k--~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~ 197 (233)
T 3tt9_A 120 WNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLID 197 (233)
T ss_dssp HHHHTSGGGH--HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHH
T ss_pred HHHHcChhhH--HHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHH
Confidence 8888765542 111 124788887653 11 244667888899999974467999999874 7789
Q ss_pred HHHHHHhhccc----CcchHHHHHHHHHHHHhhc
Q 008710 160 VLAFQMSTFAD----GSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 160 ~l~~~i~~~~~----~s~~~e~Al~LL~~Ll~~~ 189 (557)
.|..-+..-.. ..-..|-++-.|..|-+++
T Consensus 198 ~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 198 SLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 98654432111 1234566777776665543
No 37
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.48 E-value=6 Score=42.33 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhcC-cchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcCC--ccccCCc
Q 008710 33 RLAGLLVVTKFCKGDDAVSLRKIYDAVG-PRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRV--PEIASSE 109 (557)
Q Consensus 33 kfagLlLvtkl~~~~d~~~~~~v~~Aig-~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~~--pe~A~~~ 109 (557)
++-+.-.+++++.+++ +....|...-| .+.|-+||+++ ....+.-|+..|..++.. ++.- .
T Consensus 217 ~~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL~s~-------------~~~v~~~A~~aL~nLs~~~~~~~k--~ 280 (458)
T 3nmz_A 217 RRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQLKSE-------------SEDLQQVIASVLRNLSWRADVNSK--K 280 (458)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHCHHHHHHHHHGGGCS-------------CHHHHHHHHHHHHHHTSSCCHHHH--H
T ss_pred HHHHHHHHHHHhCCCc-ccHHHHHHcCCcHHHHHHHHhCC-------------CHHHHHHHHHHHHHHhcCCCHHHH--H
Confidence 4555566777776533 33344444456 58888899874 223466677777777752 3211 1
Q ss_pred chh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhh-hcCChHHHHHHHhhcccCc---chHHHHHHHHH
Q 008710 110 DMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLY-ESGGMKVLAFQMSTFADGS---RLMELAIRLLQ 183 (557)
Q Consensus 110 ~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~-~~g~i~~l~~~i~~~~~~s---~~~e~Al~LL~ 183 (557)
.++ +-||.|++.+.++.+..+...+..+|..++...++.+..+. ..|+++.|..-+.. ...+ .-.+.|...|.
T Consensus 281 ~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~-~~~~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY-RSQTNTLAIIESGGGILR 359 (458)
T ss_dssp HHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC-CCSSSTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC-CCCcchHHHHHHHHHHHH
Confidence 222 45899999987666666778899999999722556677777 79999998554432 2212 12566777776
Q ss_pred HHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhc
Q 008710 184 LMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLS 233 (557)
Q Consensus 184 ~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~ 233 (557)
.|-...... .++.+.+. ..++.|-..........|-+++..|..+-.
T Consensus 360 nLs~~~a~~---~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 360 NVSSLIATN---EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHTTC---HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHhcccCC---HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 654310000 01111111 134444444444445677788888877753
No 38
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=85.68 E-value=23 Score=33.11 Aligned_cols=177 Identities=11% Similarity=0.173 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcC-CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhh
Q 008710 89 LQLSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMST 167 (557)
Q Consensus 89 ~~LavsvLa~F~~-~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~ 167 (557)
+.=|+.-|..+.. .|++. .+++..-++.|...+.+..+..+...++++|..++.......+... ...++.++..+..
T Consensus 32 R~~a~~~L~~l~~~~~~~~-~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-~~ilp~ll~~l~d 109 (242)
T 2qk2_A 32 RKESLEVLEKLLTDHPKLE-NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-SACVPSLLEKFKE 109 (242)
T ss_dssp HHHHHHHHHHHHHHCSSBC-CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHcC
Confidence 3445555555554 25554 2344455667777775456667778999999888632222111111 2245554333321
Q ss_pred cccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcC
Q 008710 168 FADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVM 247 (557)
Q Consensus 168 ~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~ 247 (557)
....-.+.|...|..+.... .+..+++.+...+.......|.+++.+|..++....+..
T Consensus 110 --~~~~vr~~a~~aL~~~~~~~-----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~-------- 168 (242)
T 2qk2_A 110 --KKPNVVTALREAIDAIYAST-----------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA-------- 168 (242)
T ss_dssp --CCHHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG--------
T ss_pred --CCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC--------
Confidence 11233466667776665543 145677777777776666789999999999887642110
Q ss_pred CccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCC
Q 008710 248 PDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGE 289 (557)
Q Consensus 248 ~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~ 289 (557)
........+...|...|..+ .++-|..|......+...+|.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCH
Confidence 12233346777788888554 456799999999999999984
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=85.37 E-value=46 Score=37.26 Aligned_cols=367 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred hHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhccccccc
Q 008710 116 PPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIIT 195 (557)
Q Consensus 116 P~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~ 195 (557)
+.+++.+. ..+..+-.-+.+++..| +..++.... .+.++.+...+. .......+.|+..|..+........-.
T Consensus 93 ~~ll~~l~-~~~~~vr~~~a~~i~~i--a~~~~~~~w--p~ll~~L~~~l~--~~~~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 93 SECLNNIG-DSSPLIRATVGILITTI--ASKGELQNW--PDLLPKLCSLLD--SEDYNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHTTTT-CSSHHHHHHHHHHHHHH--HHHTTTTTC--TTHHHHHHHHHS--CSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHH--HHhcCcccc--HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhHHHhch
Q ss_pred ccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhHHHHHHHHHHHhcCCChhhhhh
Q 008710 196 NDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQ 275 (557)
Q Consensus 196 ~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~ 275 (557)
..-...+..+++.+-.-|...+...|..++..|..++... ...-..+...+...+...+++. .+.-|..
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~----------~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~ 234 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR----------TQALMLHIDSFIENLFALAGDE-EPEVRKN 234 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT----------CHHHHTSHHHHHHHHHHHHTCC-CHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc----------cHHHHHHHHHHHHHHHHHcCCC-CHHHHHH
Q ss_pred HHHHHHHHHhhcCCccccCCCCCCCCcCCCCccchHHHhhhh-------hhHHHHHhcchhh--------hhhhhcccCC
Q 008710 276 ALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLES-------SRVEIAVLLNELA--------YLKYEASKNT 340 (557)
Q Consensus 276 aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kF~lLll~l-------a~VEVr~~Lee~~--------~~~~~~~~~~ 340 (557)
|+.....+++.++ -.+.+ .-+.++-++++. ++.+.--.+.... ...+
T Consensus 235 a~~~L~~l~~~~~--~~~~~----------~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~------ 296 (852)
T 4fdd_A 235 VCRALVMLLEVRM--DRLLP----------HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH------ 296 (852)
T ss_dssp HHHHHHHHHHHCH--HHHGG----------GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT------
T ss_pred HHHHHHHHHHhCH--HHHHH----------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH------
Q ss_pred CcchhhhhhhhhhhhhhHHHH---HHHHHHHhhhccccCCC----CChhHHHHHHHHH--------HHHHHHHHHHHHHh
Q 008710 341 SSTAESFFSKQRNVAIAFSLV---EKIIRLISNIAESEGGL----IDDNTFMKVMNGL--------NETIGVVLEYLQDA 405 (557)
Q Consensus 341 ~~~~e~i~~~~~~L~~Cf~il---E~~I~~l~~~~e~~~~~----l~~~~~~q~~~~L--------~Ea~~~VL~~L~~~ 405 (557)
-..+++.++..+ |.-+++...+.+.+... -+......+...| ++.+..++.++.+
T Consensus 297 ---------~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~- 366 (852)
T 4fdd_A 297 ---------LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE- 366 (852)
T ss_dssp ---------HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH-
T ss_pred ---------HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-
Q ss_pred hhhhcccCchh-HHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCCCCCchhHHHHhhhhccccccchhhhhhhccC
Q 008710 406 KEHERKKGNDL-LASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSG 484 (557)
Q Consensus 406 ~~~~~~~~~~v-~AsvRvLgawLAEe~sal~~~v~~LLPfll~~~~~~~~~~~d~lrfLLP~Lc~lT~e~~gr~il~~~~ 484 (557)
.-...++.+ .++++.+|+...-.+..+++.+.+++|+++...++....-.....+.|.-++....+.. ...
T Consensus 367 --~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~------~~~ 438 (852)
T 4fdd_A 367 --LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP------PDT 438 (852)
T ss_dssp --HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC------TTT
T ss_pred --HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch------HHH
Q ss_pred ChHHHHHHHHHHhcCCCccccCchHHHHHHHHHHHHHhhccccccCCCCccchHHHHHHHHH
Q 008710 485 MYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAY 546 (557)
Q Consensus 485 ~~~~L~~~l~~~~~~~~~~~~~~~~l~~aC~illNl~v~~~~~~~~~~~~~~F~~ll~~l~~ 546 (557)
...-+...+....... +...-..+|..|.|+.-. -+..+. +.+-.+++.|..
T Consensus 439 ~~~~ll~~L~~~L~d~-----~~~vr~~a~~aL~~l~~~--~~~~l~---~~l~~ll~~L~~ 490 (852)
T 4fdd_A 439 YLKPLMTELLKRILDS-----NKRVQEAACSAFATLEEE--ACTELV---PYLAYILDTLVF 490 (852)
T ss_dssp THHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHH--HGGGGG---GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHH--hhHhhH---hHHHHHHHHHHH
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=85.28 E-value=58 Score=37.29 Aligned_cols=238 Identities=8% Similarity=0.061 Sum_probs=135.3
Q ss_pred HHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhc--
Q 008710 23 KLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFC-- 100 (557)
Q Consensus 23 ~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~-- 100 (557)
.+|++.++..|=.+.-.+-++. .|.+.+..+.+.=|.+.|-++|.++... + + .-+..|...|+-..
T Consensus 464 ~Ll~S~s~~~re~A~~aL~nLS--~d~~~R~~lvqqGal~~LL~lL~s~~~~-------~-~--~~k~~AA~ALArLlis 531 (778)
T 3opb_A 464 REMHNLSPNCKQQVVRIIYNIT--RSKNFIPQLAQQGAVKIILEYLANKQDI-------G-E--PIRILGCRALTRMLIF 531 (778)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHH--TSGGGHHHHHHTTHHHHHHHHTTCC----------C-C--HHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHhcCCCc-------c-h--HHHHHHHHHHHHHHhc
Confidence 3444444444444444444443 3455666777765568888888886221 1 1 23455556665554
Q ss_pred CCccccC-CcchhcchhHHHHHhhcccccc-------------hHHHHHHHHHHHHhcCc-----hhhhHhhhc-CChHH
Q 008710 101 RVPEIAS-SEDMVSKVPPILELMLKESGTS-------------ILEECYEFLYLVTNATG-----DGVTTLYES-GGMKV 160 (557)
Q Consensus 101 ~~pe~A~-~~~~v~~IP~l~~~l~~~~~~~-------------~~~~~~~~L~~ia~a~~-----~G~~~l~~~-g~i~~ 160 (557)
++|+++- .....+-||.|++.+...++.. ..-+|+-+|+.+| +.+ +.++.+++. |+++.
T Consensus 532 ~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLA-s~~~n~~E~~r~~Ii~~~ga~~~ 610 (778)
T 3opb_A 532 TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLA-SSETSDGEEVCKHIVSTKVYWST 610 (778)
T ss_dssp SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHSHHHHHH
T ss_pred CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHh-cCCcccchHHHHHHHHhcCHHHH
Confidence 5898873 3344689999999997322211 1458888888898 465 346778884 99999
Q ss_pred HHHHHhhcccCcchHHHHHHHHHHHHhhccc--cccc-ccChh---hHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhcc
Q 008710 161 LAFQMSTFADGSRLMELAIRLLQLMLSKLSL--EIIT-NDYLS---ELSTIVTVVAREFAVLHNALKFESLHLLTAVLSS 234 (557)
Q Consensus 161 l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~--~~~~-~~~~~---~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~ 234 (557)
+-.-+. .+...-...|.+++..|...... ...- .+.+. .+..+|. +. .....+.|-.++-.|+.+-+.
T Consensus 611 L~~LL~--s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~-Ll---~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 611 IENLML--DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVK-LL---QLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHGGG--CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHH-GG---GCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHH-HH---cCCCHHHHHHHHHHHHHhcCC
Confidence 744333 24444567789999999876532 1221 11122 1333332 22 233445666667666666443
Q ss_pred chhhhHHHHhhcCCccchhHHHHHHHHHHHhcC-CChhhhhhHHHHHHHHHhhc
Q 008710 235 NYSALLHEALRVMPDSKWSMYMRVGVVAILQNR-VAPAEKLQALILAESIVSIK 287 (557)
Q Consensus 235 ~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~ll~l~ 287 (557)
. +.-.... ... ......+..+|+.- -.+.-|+.++.+..+|....
T Consensus 685 ~-~~ia~~l----l~~---~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 685 I-PLIAKEL----LTK---KELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp C-HHHHHHH----TTC---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred C-hHHHHHH----HHc---cccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 3 2111111 111 12234556677664 46777888999999998754
No 41
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=76.34 E-value=56 Score=31.37 Aligned_cols=206 Identities=11% Similarity=0.097 Sum_probs=116.8
Q ss_pred HHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHH-hc-CCccccC-CcchhcchhHHHHHhhcccccchH
Q 008710 55 IYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAA-FC-RVPEIAS-SEDMVSKVPPILELMLKESGTSIL 131 (557)
Q Consensus 55 v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~-F~-~~pe~A~-~~~~v~~IP~l~~~l~~~~~~~~~ 131 (557)
|.+.++..|..+| .++ + ... +.=|+.-|+. ++ ..|++.. +.++..-+..|...+.+..+..++
T Consensus 13 i~~kl~~~f~~~l-~s~--~----------w~e-Rk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~ 78 (249)
T 2qk1_A 13 ILDKLPKDFQERI-TSS--K----------WKD-RVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78 (249)
T ss_dssp CGGGSCTTHHHHH-TCS--S----------HHH-HHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHH
T ss_pred hhhhCChhHHHHh-hcC--C----------HHH-HHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHH
Confidence 4556777888776 332 1 111 1123333445 44 4677663 334445567788888666666677
Q ss_pred HHHHHHHHHHHhcCc-hhhh-HhhhcCChHHHHHHHhhcccCcchH-HHHHHHHHHHHhhcccccccccChhhHHHHHHH
Q 008710 132 EECYEFLYLVTNATG-DGVT-TLYESGGMKVLAFQMSTFADGSRLM-ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTV 208 (557)
Q Consensus 132 ~~~~~~L~~ia~a~~-~G~~-~l~~~g~i~~l~~~i~~~~~~s~~~-e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~ 208 (557)
..|++||..++.... ++.+ .... -.++.++..+. +..... +.|-.-|..+....++.. .+ ..+..++..
T Consensus 79 ~~A~~al~~la~~l~~~~f~~~y~~-~llp~ll~~l~---dkk~~V~~aa~~al~~i~~~~~~~~---~~-~~l~~ll~~ 150 (249)
T 2qk1_A 79 ALAAQSVELICDKLKTPGFSKDYVS-LVFTPLLDRTK---EKKPSVIEAIRKALLTICKYYDPLA---SS-GRNEDMLKD 150 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHHHHGGG---CCCHHHHHHHHHHHHHHHHHSCTTC---TT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccHHHHH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHccccc---cC-CcHHHHHHH
Confidence 899999988863222 2222 2221 24555544332 222222 555556666666553211 11 014456667
Q ss_pred HHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchh-HHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 008710 209 VAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWS-MYMRVGVVAILQNRVAPAEKLQALILAESIVSIK 287 (557)
Q Consensus 209 la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~-~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~ 287 (557)
|...+.+..-..|-+++.+|..++......|-.. .... ..+...|...+... .+.=|..|......++.++
T Consensus 151 l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l-------~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL-------QRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH-------HHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH-------HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 7766665555778899999999996651100000 0133 44555666666433 7788999999999999999
Q ss_pred CCc
Q 008710 288 GEE 290 (557)
Q Consensus 288 G~~ 290 (557)
|.+
T Consensus 223 G~~ 225 (249)
T 2qk1_A 223 GMN 225 (249)
T ss_dssp CSG
T ss_pred CHH
Confidence 943
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=70.54 E-value=20 Score=41.07 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=96.9
Q ss_pred hhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccC-cchHHHHHHHHHHHHhhccccc
Q 008710 115 VPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADG-SRLMELAIRLLQLMLSKLSLEI 193 (557)
Q Consensus 115 IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~-s~~~e~Al~LL~~Ll~~~~~~~ 193 (557)
||.|+..+...+ ..+-+.+.++|..++ ..++.+..+++.|+++.+...+...... ......|.+-|..++...++..
T Consensus 459 Ip~Lv~Ll~S~s-~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~ 536 (778)
T 3opb_A 459 ISFLKREMHNLS-PNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL 536 (778)
T ss_dssp HHHHHHHGGGSC-HHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH
Confidence 588887776544 444689999999997 6899999999999999986554421111 1146789999998887654443
Q ss_pred ccccChhhHHHHHHHHHHHHhh-hcc-------------hhhHHHHHHHHHhhccchh--hhHHHHhhcCCc-cchhHHH
Q 008710 194 ITNDYLSELSTIVTVVAREFAV-LHN-------------ALKFESLHLLTAVLSSNYS--ALLHEALRVMPD-SKWSMYM 256 (557)
Q Consensus 194 ~~~~~~~~l~~lv~~la~~F~~-~~~-------------~~Kfe~~~~L~~lL~~~~~--~~~~~~~~~~~~-~~W~~~i 256 (557)
.-+.+.. ...++.|-..... ... -.+|+++..|+-+-+..++ .++.... ... ..|
T Consensus 537 ~f~~~~~--~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~I--i~~~ga~---- 608 (778)
T 3opb_A 537 IFKKYSA--LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHI--VSTKVYW---- 608 (778)
T ss_dssp HSSSSCS--TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHH--HHSHHHH----
T ss_pred HcCCCcc--ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHH--HHhcCHH----
Confidence 3222111 1344444443331 111 1289999888888765311 1111100 011 245
Q ss_pred HHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 008710 257 RVGVVAILQNRVAPAEKLQALILAESIVS 285 (557)
Q Consensus 257 r~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (557)
.-|...|.+- ...-|..|..+.++|+.
T Consensus 609 -~~L~~LL~s~-n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 609 -STIENLMLDE-NVPLQRSTLELISNMMS 635 (778)
T ss_dssp -HHHHHGGGCS-SHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhCC-CHHHHHHHHHHHHHHhC
Confidence 3366666663 55678889999999886
No 43
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=68.56 E-value=1.3e+02 Score=35.27 Aligned_cols=233 Identities=13% Similarity=0.111 Sum_probs=130.0
Q ss_pred CccHHHHHHHhccCCchhHHHHHHHHHhcCCCC----CHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 008710 15 SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGD----DAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (557)
Q Consensus 15 ~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~----d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (557)
...+...+.-+.+.|..-|+.++-=+.+.++.+ |.+... +++..|+..-.. +....+.
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~--------~il~~Ll~~L~d----------~~~~vR~ 66 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER--------KVVKMILKLLED----------KNGEVQN 66 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH--------HHHHHHHHHTTC----------SSHHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHH--------HHHHHHHHHhcC----------CCHHHHH
Confidence 345778888888888888888876666666542 111111 223333332100 1234466
Q ss_pred HHHHHHHHhcC-CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhh-----hHhhhcCChHHHHHH
Q 008710 91 LSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGV-----TTLYESGGMKVLAFQ 164 (557)
Q Consensus 91 LavsvLa~F~~-~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~-----~~l~~~g~i~~l~~~ 164 (557)
.|+..|..++. .++ +.+-.-+|.+++.+...+ ..+-.-+.++|..++...+... ..-.-...++.+...
T Consensus 67 ~A~~~L~~l~~~~~~----~~~~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~ 141 (1230)
T 1u6g_C 67 LAVKCLGPLVSKVKE----YQVETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 141 (1230)
T ss_dssp HHHHHHHHHHTTSCH----HHHHHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH----HHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH
Confidence 67777777664 333 344445566777765433 3334557777777753222210 111223456666444
Q ss_pred HhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHh
Q 008710 165 MSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEAL 244 (557)
Q Consensus 165 i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~ 244 (557)
+.. .+.....+.|+..|..++...+. .+. .+ +..+++.+-..+...+...|-.++..|..+.... +...
T Consensus 142 l~~-~~~~~~~~~al~~l~~~~~~~~~-~l~-~~---~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~-~~~~---- 210 (1230)
T 1u6g_C 142 IAK-QEDVSVQLEALDIMADMLSRQGG-LLV-NF---HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC-GNIV---- 210 (1230)
T ss_dssp HSC-CSCHHHHHHHHHHHHHHHHHTCS-SCT-TT---HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------
T ss_pred HcC-CCchHHHHHHHHHHHHHHHHhHh-HHH-HH---HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc-CHHH----
Confidence 431 12234567899999998887642 222 22 4556666666666666677888888888888654 1110
Q ss_pred hcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCC
Q 008710 245 RVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGE 289 (557)
Q Consensus 245 ~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~ 289 (557)
...+...+...|.+.-.+..|..++.....+....|.
T Consensus 211 --------~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~ 247 (1230)
T 1u6g_C 211 --------FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247 (1230)
T ss_dssp --------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred --------HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH
Confidence 1223344555555544456777888888888887764
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=64.13 E-value=55 Score=36.74 Aligned_cols=213 Identities=12% Similarity=0.083 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCccHHHHHHHhccC-CchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCc
Q 008710 5 SHSQPEESAPSPSLDDCLKLLKGE-RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSE 83 (557)
Q Consensus 5 ~~~~p~~~~~~~~l~~cl~lLk~~-~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~ 83 (557)
.+.+|..|..++++++-..=|.+. -=+.|=+++.=++.+-+. -.++||..=+..|+.+-. .+..
T Consensus 10 ~~~~~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~--------y~~~Vg~~~l~~li~~L~-------~d~~ 74 (651)
T 3grl_A 10 GQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK--------YRLEVGIQAMEHLIHVLQ-------TDRS 74 (651)
T ss_dssp --------CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT--------TTTHHHHHTHHHHHHHHH-------SCTT
T ss_pred CCCCCCCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH--------hHHHhhhhhHHHHHHHHh-------cccc
Confidence 455555566677787777777754 566777888877877552 112334333333333320 1123
Q ss_pred chHHHHHHHHHHHHHhcCCcccc--------CC-------cch---hcchhHHHHHhhcccccchHHHHHHHHHHHHhcC
Q 008710 84 NRDAYLQLSVTVLAAFCRVPEIA--------SS-------EDM---VSKVPPILELMLKESGTSILEECYEFLYLVTNAT 145 (557)
Q Consensus 84 ~~~~~~~LavsvLa~F~~~pe~A--------~~-------~~~---v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~ 145 (557)
|.+.-+..-=+++..||.+++-. .+ +.+ -+.||.|++.+.. .+.-+---++|+|..++.+.
T Consensus 75 D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~vR~~alqlL~~L~~~r 153 (651)
T 3grl_A 75 DSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHVRWPGVKLLTSLLKQL 153 (651)
T ss_dssp CHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHHHHHHHHHHHHHHhcC
Confidence 44444443334446677644311 00 111 2458899998853 45444467899999997656
Q ss_pred ch-hhhHhh-hcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHH
Q 008710 146 GD-GVTTLY-ESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFE 223 (557)
Q Consensus 146 ~~-G~~~l~-~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe 223 (557)
++ =++.++ ..++|++|..-+.. +...-..+|+-+|..|...-..-+-.......|..++.-|..+-...++..--+
T Consensus 154 ~~~~Q~~Il~~p~gi~~Lv~lL~d--~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D 231 (651)
T 3grl_A 154 GPQVQQIILVSPMGVSRLMDLLAD--SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVED 231 (651)
T ss_dssp HHHHHHHHHHSTTHHHHHHGGGGC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred cHHHHHHHHhCcccHHHHHHHHhC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence 65 577777 56999998554332 223345567777777666532112112223346666776777655555555567
Q ss_pred HHHHHHHhhccc
Q 008710 224 SLHLLTAVLSSN 235 (557)
Q Consensus 224 ~~~~L~~lL~~~ 235 (557)
++.+|..++...
T Consensus 232 CL~ll~nLLr~N 243 (651)
T 3grl_A 232 CLILLQNLLKNN 243 (651)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC
Confidence 778888888553
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=58.21 E-value=2.1e+02 Score=31.17 Aligned_cols=184 Identities=11% Similarity=0.104 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcC-CccccCCcchhcchhHHHHHhhcc--------c------ccchHHHHHHHHHHHHhcCchhhhHhh
Q 008710 89 LQLSVTVLAAFCR-VPEIASSEDMVSKVPPILELMLKE--------S------GTSILEECYEFLYLVTNATGDGVTTLY 153 (557)
Q Consensus 89 ~~LavsvLa~F~~-~pe~A~~~~~v~~IP~l~~~l~~~--------~------~~~~~~~~~~~L~~ia~a~~~G~~~l~ 153 (557)
+.-++..+..+.. .++- ..+-+-.-+|.+++.+.+. + ...+...++++|..++...++.-...+
T Consensus 517 r~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 595 (861)
T 2bpt_A 517 RASAFSALTTMVEYATDT-VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA 595 (861)
T ss_dssp HHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 4445555555553 3321 1222334456677776532 1 122345678888777533333222222
Q ss_pred hcCChHHHHHHHhhcccCc-chHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhh
Q 008710 154 ESGGMKVLAFQMSTFADGS-RLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVL 232 (557)
Q Consensus 154 ~~g~i~~l~~~i~~~~~~s-~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL 232 (557)
...++.+...+.. ..+ .-.+.++..+..+....+.+ . ...+..+++.+-.-+.......+..++..+..+.
T Consensus 596 -~~l~~~l~~~l~~--~~~~~v~~~~~~~l~~l~~~~~~~-~----~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 596 -DMLMGLFFRLLEK--KDSAFIEDDVFYAISALAASLGKG-F----EKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp -HHHHHHHHHHHHS--TTGGGTHHHHHHHHHHHHHHHGGG-G----HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcc--CCCCcHHHHHHHHHHHHHHHHhhh-H----HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1244443222221 223 45677888888877776422 2 2235566676666665444556677777777776
Q ss_pred ccchhhhHHHHhhcCCccchhHHHHHHHHHHHhcC-CChhhhhhHHHHHHHHHhhcCCcc
Q 008710 233 SSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNR-VAPAEKLQALILAESIVSIKGEEW 291 (557)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~sk-v~~~qR~~aL~Laa~ll~l~G~~W 291 (557)
... +..+ ..+...+...+...|++. ..+..|..++.....++..+|...
T Consensus 668 ~~~-~~~~---------~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 717 (861)
T 2bpt_A 668 NSL-EEDF---------RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADF 717 (861)
T ss_dssp HHT-GGGG---------HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGG
T ss_pred HHh-chhc---------cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhH
Confidence 554 1111 123345555566666654 457899999999999999988543
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=57.07 E-value=1.2e+02 Score=28.02 Aligned_cols=160 Identities=15% Similarity=0.164 Sum_probs=96.1
Q ss_pred ccCCcchhcchhH-HHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHH
Q 008710 105 IASSEDMVSKVPP-ILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQ 183 (557)
Q Consensus 105 ~A~~~~~v~~IP~-l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~ 183 (557)
+..-.++..++|. +.+.+.. .+-..-..++..|..+....++-...-. ...++.+...+.+ -....-...|++.|.
T Consensus 6 ~~~~~di~~~l~~~l~~~l~s-~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~k-d~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 6 LLDPVDILSKMPKDFYDKLEE-KKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITK-DSNVVLVAMAGKCLA 82 (242)
T ss_dssp TTSCBCCGGGSCTTHHHHHTC-SSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred hCCcccccccCCHHHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Confidence 3344567777774 7777643 3322235666777666422122110001 1233333222311 122233568899999
Q ss_pred HHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhHHHHHHHHHH
Q 008710 184 LMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAI 263 (557)
Q Consensus 184 ~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~I 263 (557)
.|...++.. -......+++.|-..|.......+-.++..|..+.... + ...+...|...
T Consensus 83 ~la~~l~~~-----~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~-------------~~~ll~~l~~~ 141 (242)
T 2qk2_A 83 LLAKGLAKR-----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST---S-------------LEAQQESIVES 141 (242)
T ss_dssp HHHHHHGGG-----GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS---C-------------HHHHHHHHHHH
T ss_pred HHHHHHhhh-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC---C-------------HHHHHHHHHHH
Confidence 888877421 12345678888888887776677777788888777654 1 23455667888
Q ss_pred HhcCCChhhhhhHHHHHHHHHhhcCC
Q 008710 264 LQNRVAPAEKLQALILAESIVSIKGE 289 (557)
Q Consensus 264 L~skv~~~qR~~aL~Laa~ll~l~G~ 289 (557)
|++| .+.-|..++.....+++.+|+
T Consensus 142 l~~~-~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 142 LSNK-NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp TTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred HcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 8888 678899999999888888763
No 47
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=47.51 E-value=3.1e+02 Score=29.86 Aligned_cols=236 Identities=11% Similarity=0.111 Sum_probs=118.7
Q ss_pred HhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhcC--
Q 008710 24 LLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCR-- 101 (557)
Q Consensus 24 lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~F~~-- 101 (557)
.|.+++...|-+++..+..+..+-..+.+....+ .++..|++.- +. + ++. -+.-++-.+..++.
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~----~il~~l~~~l--~d----~---~~~-vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH----QALPSILNLM--ND----Q---SLQ-VKETTAWCIGRIADSV 442 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH----HHHHHHHHGG--GC----S---CHH-HHHHHHHHHHHHHHHH
T ss_pred HcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH----HHHHHHHHHc--CC----C---cHH-HHHHHHHHHHHHHHHh
Confidence 3444556677888888888886544343333333 2344444432 10 1 121 22223334444443
Q ss_pred CccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCch-hhhHhhh--cCChHHHHHHHhhcccC-cchHHH
Q 008710 102 VPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGD-GVTTLYE--SGGMKVLAFQMSTFADG-SRLMEL 177 (557)
Q Consensus 102 ~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~-G~~~l~~--~g~i~~l~~~i~~~~~~-s~~~e~ 177 (557)
-+++...+-+-.-+|.+++.+... ..+...|+.+|..++....+ ....+.. ...++.+...+.. .+. ..-...
T Consensus 443 ~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~-~d~~~~vr~~ 519 (861)
T 2bpt_A 443 AESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR-IDNEFNARAS 519 (861)
T ss_dssp GGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC-SCCGGGHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC-cCcchHHHHH
Confidence 122222334445568888877542 33445566666666421110 0011111 2244444333321 121 233456
Q ss_pred HHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhh---------------cchhhHHHHHHHHHhhccchhhhHHH
Q 008710 178 AIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVL---------------HNALKFESLHLLTAVLSSNYSALLHE 242 (557)
Q Consensus 178 Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~---------------~~~~Kfe~~~~L~~lL~~~~~~~~~~ 242 (557)
+++.|..+....+.+ . ...+..+++.+-..+... ....+-.++..|..+.... +.
T Consensus 520 a~~al~~l~~~~~~~-~----~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~---- 589 (861)
T 2bpt_A 520 AFSALTTMVEYATDT-V----AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS-PS---- 589 (861)
T ss_dssp HHHHHHHHHHHCCGG-G----HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC-GG----
T ss_pred HHHHHHHHHHHcchh-h----HHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHh-hh----
Confidence 888888888876422 1 222334444443333321 1223445677777776554 11
Q ss_pred HhhcCCccchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCcc
Q 008710 243 ALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEW 291 (557)
Q Consensus 243 ~~~~~~~~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~W 291 (557)
.-..+...+...+..++++.-+..-|..++...+.+...+|.+.
T Consensus 590 -----~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~ 633 (861)
T 2bpt_A 590 -----SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF 633 (861)
T ss_dssp -----GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG
T ss_pred -----hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH
Confidence 11245567778888888876432567888888888888887543
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=43.83 E-value=3.3e+02 Score=29.11 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=73.7
Q ss_pred chhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhccccc
Q 008710 114 KVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEI 193 (557)
Q Consensus 114 ~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~ 193 (557)
.+|.+.+.+. ..+..+...|..+|..++...++....-+..+.+..++..+.. .+ .+ .-..+| .++.+..
T Consensus 161 ~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~-~~-~~---~q~~il-~~l~~l~--- 230 (591)
T 2vgl_B 161 FLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE-CT-EW---GQIFIL-DCLSNYN--- 230 (591)
T ss_dssp HHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH-CC-HH---HHHHHH-HHHHTSC---
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC-CC-ch---HHHHHH-HHHHHhC---
Confidence 3456666664 3455666777777777752122110011122334444443332 11 11 112222 3444442
Q ss_pred ccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc--hhhhHHHHhhcCCccchhHHHHHHHHHHHhcCCChh
Q 008710 194 ITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN--YSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPA 271 (557)
Q Consensus 194 ~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~--~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~skv~~~ 271 (557)
+.+......+++.+...+.....+..++++..+..+.... .+.-+. .-...+...|..++ + -.+.
T Consensus 231 --~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~---------~~~~~~~~~L~~L~-~-~d~~ 297 (591)
T 2vgl_B 231 --PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN---------MLLKKLAPPLVTLL-S-GEPE 297 (591)
T ss_dssp --CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH---------HHHHHTHHHHHHHT-T-SCHH
T ss_pred --CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH---------HHHHHHHHHHHHHh-c-CCcc
Confidence 2233445556666666555666778888888888876421 011110 01112223333333 3 3567
Q ss_pred hhhhHHHHHHHHHhhc
Q 008710 272 EKLQALILAESIVSIK 287 (557)
Q Consensus 272 qR~~aL~Laa~ll~l~ 287 (557)
-|-.||.-...+....
T Consensus 298 vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 298 VQYVALRNINLIVQKR 313 (591)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 7888888777777664
No 49
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=42.57 E-value=67 Score=31.92 Aligned_cols=97 Identities=10% Similarity=0.133 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhHH
Q 008710 176 ELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMY 255 (557)
Q Consensus 176 e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ 255 (557)
..++++|..++.+++... ..-...+...+++.|-.-.....+..+=.+-.++..+. ..++ -+.+...
T Consensus 105 ~~~L~~L~~l~~~l~~~~-y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~-~v~~-----------~~~v~~~ 171 (266)
T 2of3_A 105 IKVLELCKVIVELIRDTE-TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS-DVVG-----------PLKMTPM 171 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH-HHHC-----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH-HHCC-----------HHHHHHH
Confidence 456666666666654221 12334445556666655444444334333333332222 2211 1112222
Q ss_pred HHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCc
Q 008710 256 MRVGVVAILQNRVAPAEKLQALILAESIVSIKGEE 290 (557)
Q Consensus 256 ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~ 290 (557)
+..-++|| +.++|..+|....++++.+|..
T Consensus 172 ----l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 172 ----LLDALKSK-NARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp ----HHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG
T ss_pred ----HHHHHccC-CHHHHHHHHHHHHHHHHhcCCC
Confidence 33344888 5899999999999999999954
No 50
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=40.18 E-value=2.3e+02 Score=33.04 Aligned_cols=232 Identities=11% Similarity=0.072 Sum_probs=113.1
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 008710 18 LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLA 97 (557)
Q Consensus 18 l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa 97 (557)
+...++.|..++.+-|-++...+..+.+.-....+. .++..|+..-. . + ++.. +.-|...|+
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~--------~i~~~Ll~~l~-d-----~---~~~v-R~~a~~~L~ 111 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE--------TIVDTLCTNML-S-----D---KEQL-RDISSIGLK 111 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH--------HHHHHHHHHTT-C-----S---SSHH-HHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH--------HHHHHHHHHhc-C-----C---cHHH-HHHHHHHHH
Confidence 444555566566666777666666666543222222 22333333311 1 1 1222 445556666
Q ss_pred HhcC-Ccccc-----CCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcc-c
Q 008710 98 AFCR-VPEIA-----SSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFA-D 170 (557)
Q Consensus 98 ~F~~-~pe~A-----~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~-~ 170 (557)
.++. .+.-+ ..+..-.-+|.|.+.+..+.+..+...++++|..++...++. +.. .++.+...+.... +
T Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~---l~~--~~~~ll~~l~~~L~~ 186 (1230)
T 1u6g_C 112 TVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL---LVN--FHPSILTCLLPQLTS 186 (1230)
T ss_dssp HHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS---CTT--THHHHHHHHGGGGGC
T ss_pred HHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH---HHH--HHHHHHHHHHHHHcC
Confidence 6664 22211 001123345778888764344556688899988875212221 111 1233333332211 1
Q ss_pred -CcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCc
Q 008710 171 -GSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPD 249 (557)
Q Consensus 171 -~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~ 249 (557)
...-...|+.-|..+....+... ...-+..++..+... .....+-.++..+..+.... +..+
T Consensus 187 ~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~---~~~~~r~~a~~~l~~l~~~~-~~~~--------- 249 (1230)
T 1u6g_C 187 PRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKN---DSMSTTRTYIQCIAAISRQA-GHRI--------- 249 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT---CSSCSCTTHHHHHHHHHHHS-SGGG---------
T ss_pred CcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccC---CchhHHHHHHHHHHHHHHHh-HHHH---------
Confidence 12335667777777766553221 122244444444331 11245566777777776543 2111
Q ss_pred cchhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCc
Q 008710 250 SKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEE 290 (557)
Q Consensus 250 ~~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~ 290 (557)
..+...+...+...++.. .+.-|..++.....+...+|.+
T Consensus 250 ~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~ 289 (1230)
T 1u6g_C 250 GEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKE 289 (1230)
T ss_dssp TTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHH
Confidence 123344556666666543 4566777888877777777654
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=38.11 E-value=4.3e+02 Score=28.79 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcC-Cc--cccCCcchhcchhHHHHHhhcccc-cchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHH
Q 008710 88 YLQLSVTVLAAFCR-VP--EIASSEDMVSKVPPILELMLKESG-TSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAF 163 (557)
Q Consensus 88 ~~~LavsvLa~F~~-~p--e~A~~~~~v~~IP~l~~~l~~~~~-~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~ 163 (557)
.+..++..+..++. .+ ++. |-+-.-+|.+++.+....+ ..+-..++.++..++...+......+. ..++.+..
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~ 656 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDAL--QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGI 656 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHH--TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhhh--HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHH
Confidence 34566777777775 32 222 3333345667777765432 244577888888775333322222222 24444433
Q ss_pred HHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhh--hcchhhHHHHHHHHHhhccchhhhHH
Q 008710 164 QMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAV--LHNALKFESLHLLTAVLSSNYSALLH 241 (557)
Q Consensus 164 ~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~--~~~~~Kfe~~~~L~~lL~~~~~~~~~ 241 (557)
.+.. .+...-...|+..+..+....+ ..+ ...+..+++.+...+.. .+...|-.++..+..+.... +..
T Consensus 657 ~l~~-~~~~~vr~~a~~~l~~l~~~~~-~~~----~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~-g~~-- 727 (876)
T 1qgr_A 657 GLKN-YAEYQVCLAAVGLVGDLCRALQ-SNI----IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI-GGE-- 727 (876)
T ss_dssp HHHH-CTTHHHHHHHHHHHHHHHHHHG-GGG----HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH-GGG--
T ss_pred HHcC-cchHHHHHHHHHHHHHHHHHHH-Hhh----hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh-chh--
Confidence 2321 1122234568888888887764 222 22355677777777765 35567778888888776543 111
Q ss_pred HHhhcCCccchhHHHHHHHHHHHhcCCC----------hhhhhhHHHHHHHHHhhcCC
Q 008710 242 EALRVMPDSKWSMYMRVGVVAILQNRVA----------PAEKLQALILAESIVSIKGE 289 (557)
Q Consensus 242 ~~~~~~~~~~W~~~ir~GL~~IL~skv~----------~~qR~~aL~Laa~ll~l~G~ 289 (557)
-..|...+...|...++.+.+ ..-|..++.....++..+|.
T Consensus 728 -------~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~ 778 (876)
T 1qgr_A 728 -------FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKG 778 (876)
T ss_dssp -------GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 122555555666666655542 14566677777777777663
No 52
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=34.13 E-value=2.5e+02 Score=30.98 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=80.7
Q ss_pred HHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCc-chHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 008710 20 DCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGP-RFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAA 98 (557)
Q Consensus 20 ~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~-~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvLa~ 98 (557)
-.++.|++.+-..|..++.-++.++. |....+.+-..=+. ..+.+||... ...-+.=|...|..
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~-------------~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDN-------------NIDSRAAGWEILKV 102 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCS-------------CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCC-------------CHHHHHHHHHHHHH
Confidence 35567889999999999999999995 66655544433222 3445555432 11123334445555
Q ss_pred hcCC--ccccCCcchhc--chhHHHHHhhcccc--------------------cchHHHHHHHHHHHHhcCchhhhHhhh
Q 008710 99 FCRV--PEIASSEDMVS--KVPPILELMLKESG--------------------TSILEECYEFLYLVTNATGDGVTTLYE 154 (557)
Q Consensus 99 F~~~--pe~A~~~~~v~--~IP~l~~~l~~~~~--------------------~~~~~~~~~~L~~ia~a~~~G~~~l~~ 154 (557)
+|.+ +++. ..|+. -+|.|...+.+... ..+...++.+|.++|.++.+-.+.+..
T Consensus 103 L~~~~g~d~~--~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~ 180 (684)
T 4gmo_A 103 LAQEEEADFC--VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT 180 (684)
T ss_dssp HHHHSCHHHH--HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred HHhhcCchHH--HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5532 3332 11111 24555555532110 123345667777776556666777888
Q ss_pred cCChHHHHHHHhhcccCcchHHHHHHHHHHH
Q 008710 155 SGGMKVLAFQMSTFADGSRLMELAIRLLQLM 185 (557)
Q Consensus 155 ~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~L 185 (557)
.|.++.+...+.. ......+.....+++|
T Consensus 181 ~~~l~~l~~~L~~--~~~~~~~v~~~a~~~L 209 (684)
T 4gmo_A 181 KQTILRLLFRLIS--ADIAPQDIYEEAISCL 209 (684)
T ss_dssp CHHHHHHHHHHHH--HCCSCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 8888888666543 2223344444444443
No 53
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=26.76 E-value=2.1e+02 Score=28.49 Aligned_cols=148 Identities=13% Similarity=0.093 Sum_probs=90.4
Q ss_pred chhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcchHHHHHHHHHHHHhhc
Q 008710 110 DMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 110 ~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~ 189 (557)
.+-.-.|.++++.. +.|+-+.-.|+.||-.+-...|-+.+.+.. ++.++-+-+. ....-..++|...|..+ +.
T Consensus 72 ~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik--~~~~il~~eaae~Lgkl--kv 144 (265)
T 3b2a_A 72 VLERHLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLE--SPDDMMRIETIDVLSKL--QP 144 (265)
T ss_dssp HHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTT--SCCHHHHHHHHHHHHHC--CB
T ss_pred HHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhc--CCCchHHHHHHHHhCcC--Cc
Confidence 33444577787774 455566688999995553356655555543 2344433333 23344567777777766 21
Q ss_pred ccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhHHHHHHHHHHHhcCCC
Q 008710 190 SLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVA 269 (557)
Q Consensus 190 ~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~~ir~GL~~IL~skv~ 269 (557)
. .. ...+++.+.+-..-..-..|--.+..|..+-+.. ...+.| .+|.+|+.++|++. .
T Consensus 145 -----~-~~---~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S-----------~D~~i~-~~I~~eI~elL~~e-D 202 (265)
T 3b2a_A 145 -----L-ED---SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS-----------ADSGHL-TLILDEIPSLLQND-N 202 (265)
T ss_dssp -----S-CC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC-----------SSCCCG-GGTTTTHHHHHTCS-C
T ss_pred -----c-cc---hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc-----------CCHHHH-HHHHHHHHHHHcCC-C
Confidence 1 11 1335555555554444455655566666665543 122333 67889999999999 9
Q ss_pred hhhhhhHHHHHHHHHhh
Q 008710 270 PAEKLQALILAESIVSI 286 (557)
Q Consensus 270 ~~qR~~aL~Laa~ll~l 286 (557)
+.-++-||...+.|+..
T Consensus 203 ~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 203 EFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999988877665
No 54
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=22.78 E-value=6.3e+02 Score=25.90 Aligned_cols=184 Identities=12% Similarity=0.064 Sum_probs=98.5
Q ss_pred HHHHHHHHH-hcCCccccCCcchhcc--hhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhh-cCChHHHHHHH
Q 008710 90 QLSVTVLAA-FCRVPEIASSEDMVSK--VPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYE-SGGMKVLAFQM 165 (557)
Q Consensus 90 ~LavsvLa~-F~~~pe~A~~~~~v~~--IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~-~g~i~~l~~~i 165 (557)
.-++-=|.. |..|+++| ++++.+ +-.|+.++...++.+ -.-++..|..+- -+..|-..+++ ...|..+.+-+
T Consensus 136 r~aLfsLk~~~q~D~~Fa--~EFI~~~GL~~Li~vi~~~~gN~-q~Y~L~AL~~LM-~~v~Gm~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 136 RRSLFSLKQIFQEDKDLV--PEFVHSEGLSCLIRVGAAADHNY-QSYILRALGQLM-LFVDGMLGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHHHHHHHHHTCTTHH--HHHHHTTHHHHHHHHHTTSCHHH-HHHHHHHHHHHT-TSHHHHHHHHHCHHHHHHHHHGG
T ss_pred HHHHHHHHHHhhcchHHH--HHHHHhccHHHHHHHHHhcChHH-HHHHHHHHHHHH-hccccccchhCCHHHHHHHHHHH
Confidence 334444555 88899999 666655 567888887766666 488999998884 68899988885 34555543322
Q ss_pred hhcccCcchHHHHHHHHHHHHhhcccc-ccccc---------ChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710 166 STFADGSRLMELAIRLLQLMLSKLSLE-IITND---------YLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSN 235 (557)
Q Consensus 166 ~~~~~~s~~~e~Al~LL~~Ll~~~~~~-~~~~~---------~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~ 235 (557)
. .....-...|++||..++...... .+..+ ...++..++..|.+ ......+.+.-++.+++.+|...
T Consensus 212 -~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~-~~~~D~elq~~amtLIN~lL~~a 288 (339)
T 3dad_A 212 -A-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEE-KNGADPELLVYTVTLINKTLAAL 288 (339)
T ss_dssp -G-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTT-TTSCCHHHHHHHHHHHHHHHHHC
T ss_pred -c-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhc-cCCCCHHHHHHHHHHHHHHHhcC
Confidence 1 111122467999998887764100 00000 00112233332211 01234466777788888888775
Q ss_pred hhhh-HHHHhhcCCccch-hHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHh
Q 008710 236 YSAL-LHEALRVMPDSKW-SMYMRVGVVAILQNRVAPAEKLQALILAESIVS 285 (557)
Q Consensus 236 ~~~~-~~~~~~~~~~~~W-~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~ 285 (557)
.... ..+ -...| ...++.-+..-|.++-+..+-..=|.+.+..++
T Consensus 289 pd~d~~~d-----i~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE~~~~ 335 (339)
T 3dad_A 289 PDQDSFYD-----VTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYENALK 335 (339)
T ss_dssp SSHHHHHH-----HHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHHHHHH
T ss_pred CChhHHHH-----HHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHHHHhh
Confidence 2111 111 12233 444444444444444444333333455554443
No 55
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=22.53 E-value=6.3e+02 Score=25.75 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=74.0
Q ss_pred CCCCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 008710 11 ESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ 90 (557)
Q Consensus 11 ~~~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~ 90 (557)
+.++-..+...+.-|++.+...|..+.-.++++...-..+ +.++ ..+..|.... . .+. .-+.
T Consensus 5 ~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~---~~~~----~l~~~L~~~~--d--------~~~-~vr~ 66 (588)
T 1b3u_A 5 GDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVE---RTRS----ELLPFLTDTI--Y--------DED-EVLL 66 (588)
T ss_dssp TTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH---HHHH----THHHHHHHTC--C--------CCH-HHHH
T ss_pred cCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHH---HHHH----HHHHHHHHhc--C--------CcH-HHHH
Confidence 3445566888888888888888888877666654321111 1111 1233332221 1 122 2344
Q ss_pred HHHHHHHHhcCCccccCCcc-hhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcc
Q 008710 91 LSVTVLAAFCRVPEIASSED-MVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFA 169 (557)
Q Consensus 91 LavsvLa~F~~~pe~A~~~~-~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~ 169 (557)
.+...|..|+.. + ..++ .-.-+|.|...+ ...+..+-..+.++|..++...++ +. +..-.++.+ ..+.. .
T Consensus 67 ~~~~~L~~~~~~--~-~~~~~~~~ll~~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~~--~~-~~~~l~~~l-~~l~~-~ 137 (588)
T 1b3u_A 67 ALAEQLGTFTTL--V-GGPEYVHCLLPPLESLA-TVEETVVRDKAVESLRAISHEHSP--SD-LEAHFVPLV-KRLAG-G 137 (588)
T ss_dssp HHHHHHTTCSGG--G-TSGGGGGGGHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSCH--HH-HHHTHHHHH-HHHHT-C
T ss_pred HHHHHHHHHHhc--c-CcHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHH-HHHhc-C
Confidence 455555555531 1 1223 333446665544 334455667888888888532222 22 122233332 33321 1
Q ss_pred cCcchHHHHHHHHHHHHhhc
Q 008710 170 DGSRLMELAIRLLQLMLSKL 189 (557)
Q Consensus 170 ~~s~~~e~Al~LL~~Ll~~~ 189 (557)
+.......|.+++..+....
T Consensus 138 ~~~~~R~~a~~~l~~~~~~~ 157 (588)
T 1b3u_A 138 DWFTSRTSACGLFSVCYPRV 157 (588)
T ss_dssp SSHHHHHHHGGGHHHHTTTS
T ss_pred CCcHHHHHHHHHHHHHHHhc
Confidence 22233455666666655444
No 56
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=21.26 E-value=88 Score=23.71 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=30.3
Q ss_pred HHHHHHHhc-----cCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhc
Q 008710 18 LDDCLKLLK-----GERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAV 59 (557)
Q Consensus 18 l~~cl~lLk-----~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Ai 59 (557)
+.+.+.||. |+--++|+++| .|+++.+=++++|.||+.|
T Consensus 9 v~RaiELle~lq~sgevp~~KL~aL---q~VLqSdF~~aVREVYEhv 52 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVNNAKLASL---QQVLQSEFFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHHHHH---HHHHSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence 455565553 34678898886 8999998899999999975
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=20.97 E-value=8.2e+02 Score=26.50 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhc--chhhHHHHHHHHHhhccchhhhHHHHhhcCCccchhH
Q 008710 177 LAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLH--NALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSM 254 (557)
Q Consensus 177 ~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~--~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~W~~ 254 (557)
.++..|..+....+.+.+ ...+..+++.+-.-+.... ...+-+++..+..+.... +. .-..+..
T Consensus 583 ~~~~~l~~l~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~-~~---------~~~~~~~ 648 (876)
T 1qgr_A 583 LLCATLQNVLRKVQHQDA----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL-GG---------EFLKYME 648 (876)
T ss_dssp HHHHHHHHHHTTSCHHHH----HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH-GG---------GGGGGHH
T ss_pred HHHHHHHHHHHHhChhhh----hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH-Hh---------hHHHHHH
Confidence 456666666666531212 1224556666666555543 245667777777777543 11 1123445
Q ss_pred HHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCccc
Q 008710 255 YMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWL 292 (557)
Q Consensus 255 ~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl 292 (557)
.+...+...|++.-.+.-|..|+.+...++..+|..+.
T Consensus 649 ~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 686 (876)
T 1qgr_A 649 AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII 686 (876)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56677777787775677888999999999998885543
Done!