BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008711
(557 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MIT2|PUS10_HUMAN Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10
PE=1 SV=1
Length = 529
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 159/455 (34%), Positives = 250/455 (54%), Gaps = 43/455 (9%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
N+C CLGILQ +C DF + + V+ G + S VS PP +
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
E+ L VK++ ++ R + K+A K+ +T+PL E L G S F +
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
+ ++ E +E C +C K+K SV + V+
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
K+ N +++ + + P C LE C ++ GRY KYSRN+ QT WIID
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
ER E+S+EE+I ++L + + +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
+KE++ KIN+ NK ++V++L++V + M+EGE EK K Y+AL+W ++ +Q +D
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429
Query: 458 QTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 517
+ ++ +K+ +I QKTP+RVLHRR R ++I++M+ + + +F LH+ TQAGTYIK
Sbjct: 430 EFLNDIKDLKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAGTYIK 487
Query: 518 EFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 552
EFVHGD GRT P+IGS++ A+IL+LDV V ++
Sbjct: 488 EFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
>sp|Q9D3U0|PUS10_MOUSE Putative tRNA pseudouridine synthase Pus10 OS=Mus musculus GN=Pus10
PE=1 SV=1
Length = 527
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/454 (34%), Positives = 240/454 (52%), Gaps = 43/454 (9%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
+C CLGILQ +C F + + V+ G + S L VS PP +
Sbjct: 106 VCNVCLGILQ-EFCEK-----------GFITKVCQKVEASGFEFTSVVLSVSFPPQLSVR 153
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIRL 220
E+ L VK++ ++ R+ + K+A K+ +T+PL E L G S F + +
Sbjct: 154 EHAAWLLVKQEMGKQSLSLGRN--DVVQLKEAYKW-ITHPLFSEELGVPTDGKSLFEVSV 210
Query: 221 TYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEK 280
++ E + E C ++C K+K ++ + + +++ D
Sbjct: 211 VFAHPETA----------EDCHFLGEVCRDCFKPAKNKQSVFTRMAVLKALSKIKEEDFL 260
Query: 281 SSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEE 339
N P C LE C ++ GRY KYSRN+ QT WIID E
Sbjct: 261 GQFPCPPNSPKTV-----------CTVLEVECTHGAVFVAGRYNKYSRNLPQTPWIIDGE 309
Query: 340 RMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SEL 398
R E+S+EE+I ++L + R +S+ F ++GRED+DVR LG+GRPF E+ N V +
Sbjct: 310 RKMESSVEELISDHLLAVFRAESFNFSSSGREDVDVRTLGNGRPFAVELLNPHRVHFTSQ 369
Query: 399 LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQ 458
+KE++ IN +K ++V++L++V + M+EGE EK K Y+AL+W +R +Q +D
Sbjct: 370 EMKELQQTINKSSDK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNRAIQKKDIG 428
Query: 459 TISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKE 518
+ LK+ +I QKTP+RVLHRR R + I+ MK + +F LH+ TQAGTYIKE
Sbjct: 429 FLDDLKDLKIDQKTPLRVLHRRPLAVRTRAIHSMKTHYL--DEHHFRLHLKTQAGTYIKE 486
Query: 519 FVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 552
FVHGD GRT P++GS++ A+IL+LDV V ++
Sbjct: 487 FVHGDFGRTKPNLGSLMNVTADILELDVESVDVD 520
>sp|Q6ING2|PUS10_XENLA Putative tRNA pseudouridine synthase Pus10 OS=Xenopus laevis
GN=pus10 PE=2 SV=1
Length = 515
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 154/453 (33%), Positives = 238/453 (52%), Gaps = 42/453 (9%)
Query: 103 ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILEN 162
IC CLGILQ +C E E V I V +++ F L +S+P +
Sbjct: 95 ICPLCLGILQ-QFC-------EPEFIEKVFVKINSAV----YELKDFVLSISLPAQLSVR 142
Query: 163 ENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFHIRLT 221
E+ L K++ D++ + K+A K+ + L L ++ S F + +
Sbjct: 143 EHSAWLQAKQEMGKHGHSLDKT--DIVQLKEAYKWIIHPLLSDQLGIQADSKSLFEVAVV 200
Query: 222 YSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKS 281
++ E C ++C K+K SV + V+ EK
Sbjct: 201 FTHPETD----------GDCHFLATVCRDCFKPTKNK-------QSVFTRMAVVKALEK- 242
Query: 282 SNGLQDNEPSETHEFPLKKVNEPCRL-ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEER 340
+++ + FP C + + C +P++ GRY KYSRN+ QT WIID ER
Sbjct: 243 ---IKEEDFRVQFPFPPSSPETTCEVVDIQCNHSPVFVAGRYNKYSRNLPQTPWIIDGER 299
Query: 341 MGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELL 399
E+S+EE+I +++ R S+ F ++GRED+DVR LG GRPF E+ N +V +
Sbjct: 300 KIESSVEELITDHLVAAFRSSSFNFSSSGREDVDVRTLGKGRPFAIELLNPHKVQFTGQE 359
Query: 400 VKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+K ++ KIN+ + ++V++L+IV + M+EGE EK K Y AL+WI + +++ED Q
Sbjct: 360 IKALQQKINTSDK--IKVRDLQIVSREAVAHMKEGEEEKTKCYCALIWIEKMVRNEDLQL 417
Query: 460 ISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEF 519
+ L+E I QKTP+RVLHRR R + I+ M+ E + +F L++ TQAGTYIKEF
Sbjct: 418 LDGLEELTIAQKTPLRVLHRRPLASRSRTIHTMRTEYV--DEHHFRLYLKTQAGTYIKEF 475
Query: 520 VHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 552
VHGD GRT P++GSI+ A+IL+LDV V ++
Sbjct: 476 VHGDFGRTKPNVGSIMETNADILELDVESVDVD 508
>sp|Q9VPK7|PUS10_DROME Putative tRNA pseudouridine synthase Pus10 OS=Drosophila
melanogaster GN=Pus10 PE=2 SV=2
Length = 500
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 154/273 (56%), Gaps = 16/273 (5%)
Query: 291 SETHE----FPLKKVNEPCRLECLCFRTP-IYFGGRYLKYSRNVSQTRWIIDEERMGEAS 345
+ET+E P V E +L + + P I GRY K SR +S T WI++ +R+ E S
Sbjct: 221 AETYEKYFQIPCSNVEESIKLTSIDLQGPLICVAGRYRKLSRELSHTPWILNGQRLMEDS 280
Query: 346 IEEIIGGNILPMC--RGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKE- 402
IEEII ++ P + F ++GRED+DVR LG GRPF+ EI NA+ L K+
Sbjct: 281 IEEIIIRHVGPHFTEKLGKITFMSSGREDVDVRCLGKGRPFVLEIPNAKR---SCLTKDE 337
Query: 403 ---IESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT 459
+E +++ + +V + +L++V + T ++ GE +K+K Y AL + P+ + +
Sbjct: 338 AFAMERAVDA--SGMVSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQ 395
Query: 460 ISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEF 519
+ I QKTPIRVLHRR R + I + + G+ + ++ + TQAGTYIKE
Sbjct: 396 LQISASFNIQQKTPIRVLHRRPLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGTYIKEL 455
Query: 520 VHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 552
VHG+ GRT PS+ SI+G +I LDV + ++
Sbjct: 456 VHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLD 488
>sp|A1RX33|PUS10_THEPD tRNA pseudouridine synthase Pus10 OS=Thermofilum pendens (strain
Hrk 5) GN=pus10 PE=3 SV=1
Length = 444
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 132/238 (55%), Gaps = 6/238 (2%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMG-EASIEEIIGGNILPMCRGDSYKFHAAGRED 372
P++ GRY KY+R + Q W +ER+ SIEE+I L + + KFHAAGRED
Sbjct: 206 APVFVYGRYRKYARGLPQNPWPQPDERIKFNTSIEELIVKPALELFEAEKAKFHAAGRED 265
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
IDVR LG+GRPF+ EI+ R+ +L V + KINS L+ V +L + ++
Sbjct: 266 IDVRTLGTGRPFVLEIKKPRKRNIDLKV--LAEKINSGAGGLIEVLDLAYTDRKTIKKLK 323
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQIL-QKTPIRVLHRRSPLEREKIINW 491
+ +K Y A V +P+ DE IS + ++ Q+TP RVLHRR R+KI+
Sbjct: 324 SLASIAKKAYVARVKFEKPVDDEKLAEISKVFSNAVINQRTPTRVLHRRVDKLRKKIVYR 383
Query: 492 MKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
++ KI+ F L TQ G Y+KEF+HGD GRT PSI LG ++LDV +
Sbjct: 384 LEARKISQDEVEFYLE--TQGGFYVKEFIHGDNGRTTPSIAEFLGNNVLSIELDVVSI 439
>sp|Q2NE45|PUS10_METST tRNA pseudouridine synthase Pus10 OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=pus10 PE=3 SV=1
Length = 407
Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 135/249 (54%), Gaps = 18/249 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDE---------ERMGEA---SIEEIIGGNILPMCRGDS 362
PI+ G+Y K R + QT+W + G+ ++E++I ILPM G++
Sbjct: 163 PIFIEGKYRKLVRGIPQTKWPCTHCKGKGCEACDYTGQQYKDTVEDLISREILPMTNGNT 222
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
KFH +GREDIDVRMLG GRPF+ E+++ ++ +K + +NS + + + +LK
Sbjct: 223 TKFHGSGREDIDVRMLGEGRPFVIEVKHP--FKRKIDLKFLRVLVNSHSDGKIEINDLKY 280
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSP 482
V + ++ E K Y+A+ + +D I LK I Q+TPIRV HRR+
Sbjct: 281 VTKERKASIKNSSVESYKIYSAIAEFENGVTSKDIYNIEKLK--TIDQRTPIRVEHRRAD 338
Query: 483 LEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEIL 542
L R + I +++E+I S + L+ C Q G YIKE + GD RT PS+ SI +AE
Sbjct: 339 LIRTREIKNIEVERI-NSKKLHLIIKC-QGGLYIKELISGDNNRTKPSVSSITNNQAECT 396
Query: 543 QLDVTDVKM 551
QLDV V +
Sbjct: 397 QLDVLKVHI 405
>sp|Q6L227|PUS10_PICTO tRNA pseudouridine synthase Pus10 OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=pus10 PE=3 SV=1
Length = 377
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 132/235 (56%), Gaps = 14/235 (5%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
P+Y G Y+K SR++SQTRWI + GE SIE IIG + M ++Y H +GRED+D
Sbjct: 153 PVYIYGVYIKKSRDISQTRWI---HKTGE-SIESIIGNELRSMTGCENYYLHGSGREDVD 208
Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
V MLG+GR F+ E + +L E++ ++N+ + ++ + NL S T+ R
Sbjct: 209 VMMLGNGREFVIEAAMPKRRYIDLY--ELQLRVNA--SGILFIYNLSY--SSKATVRRIK 262
Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKI 494
+K Y A V + L + + S I Q+TP+RV++ RS L R K IN++ I
Sbjct: 263 SELHEKLYIAEV--TGDLNKDIKKACSKFNNLIIEQRTPLRVINHRSDLVRRKKINYINI 320
Query: 495 EKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
I LL +C +AGTYIKE V+GD GRT PS+ S+ G + ++ LDV +
Sbjct: 321 ISIMNGRA--LLKICAEAGTYIKELVNGDNGRTVPSLSSVYGSQLQVSSLDVVKI 373
>sp|Q8TUV7|PUS10_METKA tRNA pseudouridine synthase Pus10 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pus10 PE=3
SV=1
Length = 436
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 17/247 (6%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGDS 362
PIY GRYLK R + QT+W R + S+EE+IG + +S
Sbjct: 185 PIYVRGRYLKLRRGIPQTKWPCPRCRGAGCPNCDFTGKLYTESVEELIGMVLKDAFLAES 244
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
+KFHAAGREDIDVRMLG+GRPF+ E+ + +L KEIE +IN V+V L+
Sbjct: 245 HKFHAAGREDIDVRMLGNGRPFVMELLYPKRRNVDL--KEIEGEINRKVGDDVQVVGLEY 302
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPL-QDEDFQTISSLKETQILQKTPIRVLHRRS 481
+ +++ +K+Y A V +P+ +D+ + + L+ + I Q+TP RVLHRR+
Sbjct: 303 GDPEDVGKVKDLSERSRKRYRAWVKFGKPVPEDKLREVLKGLERSVIEQRTPRRVLHRRA 362
Query: 482 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 541
R K ++ K+ + G ++ G Y+KE + GD GRT PS+ ++ AE
Sbjct: 363 DKVRRKRVHEAKLIEYDGDRA--VIEFLCDPGLYVKELISGDAGRTRPSLAELVEVEAEC 420
Query: 542 LQLDVTD 548
+LDV +
Sbjct: 421 ERLDVIE 427
>sp|Q9HIN9|PUS10_THEAC tRNA pseudouridine synthase Pus10 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=pus10 PE=3 SV=1
Length = 389
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 129/238 (54%), Gaps = 17/238 (7%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
IY G+Y K+ R++ QTRWI R ++E +IG G +Y H +GRED+DV
Sbjct: 160 IYIYGKYRKFRRDMPQTRWI---HRPNGDTVESVIGSVFTRYAGGTNYYLHGSGREDVDV 216
Query: 376 RMLGSGRPFLFEIQNAREVPSEL--LVKEIESKINSLENKLVRVKNLKIVGSQGWTLMRE 433
RMLG+GR F+ E++N R EL +VKEI + K V + ++K + E
Sbjct: 217 RMLGNGREFVLEVENPRYREFELDPVVKEINTS-----GKGVEIFDVKFSSHDAVS---E 268
Query: 434 GEAEKQKQ-YAALVWISRPLQDED-FQTISSLKETQILQKTPIRVLHRRSPLEREKIINW 491
+ EK ++ Y ALV RP+ + + +L I Q+TP+RV RRS L R + I+
Sbjct: 269 VKLEKHRKVYDALVVSDRPIDESRLLEACINLTGKNIYQRTPLRVAQRRSDLVRTRRIDQ 328
Query: 492 MKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
+ + ++ + L+ +AGTYIKE V+GD GRT PS+ + G + +LDV +
Sbjct: 329 VDLVGVSANEAEILI--SAEAGTYIKELVNGDGGRTRPSLSEMYGSPLNVKELDVIKI 384
>sp|D9PYH9|PUS10_METTM tRNA pseudouridine synthase Pus10 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=pus10 PE=3 SV=1
Length = 402
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 129/251 (51%), Gaps = 27/251 (10%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGDS 362
PI+ GRY K R + QT+W R M S+EE+I +L G
Sbjct: 159 PIFIEGRYRKLVRGIPQTKWPCRSCRGRGCSRCDYTGKMYPTSVEELISEPVLEATGGSD 218
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQN-AREVPSELLVKEIESKINSLENKLVRVKNLK 421
KFH +GRED+DVRMLG+GRPF+ EI+ A P ++ +E +IN +V V +L+
Sbjct: 219 SKFHGSGREDVDVRMLGTGRPFVLEIKEPAIRTPD---LRALEDEINRRARGMVEVADLR 275
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRS 481
++E +K K Y A+V + + DED + L I Q+TP+RV HRR+
Sbjct: 276 FSSRNRKVELKESSRKKYKVYRAIVELEGAVSDEDLVKLEKL--DLIRQRTPLRVSHRRA 333
Query: 482 PLEREKI---INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 538
RE+ I+W +++ + L + + G YIKE + GD GRT PS+ SILG
Sbjct: 334 DRIRERRVLEISWKRLD------DHLELIIKAEGGLYIKELISGDSGRTEPSVSSILGVP 387
Query: 539 AEILQLDVTDV 549
A LDV +V
Sbjct: 388 ARCASLDVLEV 398
>sp|Q60346|PUS10_METJA tRNA pseudouridine synthase Pus10 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pus10 PE=1 SV=1
Length = 454
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 133/256 (51%), Gaps = 23/256 (8%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEA-------------SIEEIIGGNILPMCRG 360
P++ GRY K R + QTRW + R G+ S+EEII L +G
Sbjct: 205 NPLFIKGRYRKLVRGIPQTRWPCRKCR-GKGCELCNYTGKKYPISVEEIIAKPFLEATKG 263
Query: 361 DSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNL 420
KFH AGREDIDVRMLG GRPF+ EI+ + ++ + +I +IN ++ V V NL
Sbjct: 264 VDAKFHGAGREDIDVRMLGDGRPFVLEIKEPK--IRKIDLNKIAEEIN--KDGRVEVLNL 319
Query: 421 KIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQ-ILQKTPIRVLHR 479
+ + + + +K Y ALV S + DE+ + + E + I QKTP RVLHR
Sbjct: 320 EFGVRKDKVIFK--NTPHRKTYRALVECSDKITDEELKLLEKELENRTIYQKTPKRVLHR 377
Query: 480 RSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRA 539
R+ LER + + +K K+ +F + + G YIKE + GD GRTNPS+ SIL
Sbjct: 378 RADLERIRKVYKVKTSKV--DDNHFEMIIYCDGGLYIKELISGDDGRTNPSVSSILNKNC 435
Query: 540 EILQLDVTDVKMNCFL 555
+LDV + N L
Sbjct: 436 ICKELDVLKIHDNNLL 451
>sp|A0B7V3|PUS10_METTP tRNA pseudouridine synthase Pus10 OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=pus10 PE=3 SV=1
Length = 452
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 18/247 (7%)
Query: 315 PIYFGGRYLKYSRNVSQTRWII------------DEERMGEASIEEIIGGNILPMCRGDS 362
P+Y GRY K R QTRW + RM + S++E+I G I+ +
Sbjct: 200 PLYIYGRYRKLQRGFPQTRWPCRVCGGRGCERCGNTGRMYQESVDELIRGPIVEAADAED 259
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
FH AGREDID RMLGSGRPF+ E+ R +L + + +IN + V V +L
Sbjct: 260 TVFHGAGREDIDARMLGSGRPFVVEVVRPRR--RDLDLNALRDEINRRCSGKVEVSDLIF 317
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSP 482
V +++ E K Y AL+ S P+++E ++ S + Q+TP RV HRR+
Sbjct: 318 VDKSMVEMVKNERFE--KTYEALIEFSVPVEEEKLKSALSRLIGFVEQRTPTRVSHRRAD 375
Query: 483 LEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEIL 542
R + ++ ++E+ +G + + +G Y+KE + GD GRT PS+ +L A ++
Sbjct: 376 KVRRRAVHSAELEEFSGRTARITVR--CDSGLYVKELISGDAGRTRPSLAELLESDARVV 433
Query: 543 QLDVTDV 549
+LDV DV
Sbjct: 434 ELDVIDV 440
>sp|B1L7A7|PUS10_KORCO tRNA pseudouridine synthase Pus10 OS=Korarchaeum cryptofilum
(strain OPF8) GN=pus10 PE=3 SV=1
Length = 373
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 152/294 (51%), Gaps = 23/294 (7%)
Query: 269 VSTTEVIPVDEKSSNGLQ-DNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSR 327
V+ T ++ V S GL+ EP F ++ + +LE P++ GRY K R
Sbjct: 87 VTLTRLLDVAISSLTGLKVSQEPDAILIFDFERGD--VKLEL----APVFIFGRYRKLQR 140
Query: 328 NVSQTRWIIDE------------ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
+SQ+R E ++ + S+E I+G + + Y H AGRED+D
Sbjct: 141 GISQSRRKCPECGGRGCEACGWKGKIPQGSVEGIVGEVMREFFSAEDYVLHGAGREDVDA 200
Query: 376 RMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
RMLG GRPF+ E+ + + ++L +E+ES+IN L+ VKNL+ + +++E
Sbjct: 201 RMLGEGRPFVMELLSPKRRSADL--REVESEINRRAAGLIEVKNLEFSRREKIRILKERS 258
Query: 436 AEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIE 495
+K Y ALV + +++ + + + L+ I Q+TP RVL RR+ + R K + +
Sbjct: 259 PNVKKLYRALVEVEGGVEEGELELLKGLEGAVIRQRTPKRVLWRRADITRLKRVYEVNFR 318
Query: 496 KIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
+I + F L + G Y+KE + GD GRT+PS+ ILG ++ +LDV +V
Sbjct: 319 RI--DDKKFELFVLCDGGLYVKELISGDDGRTSPSVTEILGKKSFCSELDVLEV 370
>sp|Q8U1R6|PUS10_PYRFU tRNA pseudouridine synthase Pus10 OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pus10 PE=1
SV=1
Length = 388
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 130/249 (52%), Gaps = 39/249 (15%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHA------ 367
PIY GRY K R + QT +E SI II CR FH
Sbjct: 158 NPIYVAGRYRKLIRGIPQTPAPGFKE-----SIATII-------CRAFKKHFHGKCIFKG 205
Query: 368 AGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQG 427
AGRED+DVRMLG+GRPF+ EI+ R+ L K+IE +IN ++ V V NL+ + +
Sbjct: 206 AGREDVDVRMLGNGRPFVVEIKRPRKRKVNL--KDIEEEIN--QSGKVEVLNLRFITPE- 260
Query: 428 WTLMREGEAEK------QKQYAALVWISRPLQDEDFQ-TISSLKETQILQKTPIRVLHRR 480
EAE+ +K Y A+V++ + E+ + + SLK +I Q+TP RVL+ R
Sbjct: 261 -------EAERILTTRHRKVYEAIVYVKDGITKEEVEKVVKSLKNAEIKQRTPRRVLNSR 313
Query: 481 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 540
+ L R + + +K E I ++F L + T G YIKE + GD GRT PS+ ILG A
Sbjct: 314 ADLVRVRKVYDVKGELI--DDKHFKLRLVTDGGLYIKELISGDRGRTTPSVSEILGKEAW 371
Query: 541 ILQLDVTDV 549
LDV +V
Sbjct: 372 CEILDVLEV 380
>sp|O29113|PUS10_ARCFU tRNA pseudouridine synthase Pus10 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pus10 PE=3 SV=1
Length = 357
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 136/249 (54%), Gaps = 24/249 (9%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIID------------EERMGEASIEEIIGGNILPMCRGDS 362
P++ GRYLK RN+SQTRW+ + +S+EE+I + + +
Sbjct: 118 PVFIYGRYLKRVRNISQTRWLCGYCNGEGCEVCNFTGKKYVSSVEELIAMPAVRLFKARD 177
Query: 363 YKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKI 422
K H AGRED+D RMLG+GRPF+ E+ R+ +L KE+E INS K V V++L+
Sbjct: 178 AKLHGAGREDVDARMLGTGRPFVLEVIEPRKRFVDL--KELEEAINS--QKWVAVRDLEY 233
Query: 423 VGSQGWTLMREGEAEK-QKQYAALVWISRPLQDEDF-QTISSLKETQILQKTPIRVLHRR 480
++ +RE + E+ +K Y A V ++ E + + SLK +I Q+TP+RV HRR
Sbjct: 234 TDAEK---VREVKTERHRKTYRAKVVFEEKVERERLIEALESLK-GEIRQRTPMRVSHRR 289
Query: 481 SPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 540
+ R + + ++ I + + ++ +AG YIKE V GD GRT PS+ +G A
Sbjct: 290 ADRVRVRRLYDARL--IHHTGRVAVVEFEAEAGLYIKELVSGDNGRTRPSLAEKVGVNAR 347
Query: 541 ILQLDVTDV 549
+ +LDV V
Sbjct: 348 VDRLDVIAV 356
>sp|D5TZL3|PUS10_THEAM tRNA pseudouridine synthase Pus10 OS=Thermosphaera aggregans
(strain DSM 11486 / M11TL) GN=pus10 PE=3 SV=1
Length = 441
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEE-RMGEASIEEIIGGNILPMCRGDSYKFHAAGRED 372
TP+ G Y K RN+S W+ + R SI+E + + + K HAAGRED
Sbjct: 209 TPVLLKGVYNKRGRNISHVPWLAKQGGRKYPLSIQEYLESRLADPFKAKKVKIHAAGRED 268
Query: 373 IDVRMLGSGRPFLFEIQNAREVPSELLVK--EIESKINSLENKLVRVKNLKIVGSQGWTL 430
+D R LG GRP + EI E LV+ +IE + + LV V+ K + L
Sbjct: 269 VDARTLGPGRPLVIEI-------VEPLVRSYDIEDVNKLIRSDLVEVRVHKPASRRDIEL 321
Query: 431 MREGEAEKQKQYAALVWISRPLQDEDFQTISS-LKETQILQKTPIRVLHRRSPLEREKII 489
+++ EK+K Y LV S P+ + + + + I Q+TPIR+L R+ + R + +
Sbjct: 322 LKQTSREKRKVYRLLVVSSTPISEAQLNELEAYFNDIAIQQRTPIRILTRKKDVLRVRKV 381
Query: 490 NWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDV 546
++ + ++ +S L++ C G Y+KE VH D GRTNP SIL + ++LDV
Sbjct: 382 YEVRTKPVSSTSFEALVY-C-DGGLYVKELVHCDQGRTNPCFASILNTELKPVELDV 436
>sp|D7DQH5|PUS10_METV3 tRNA pseudouridine synthase Pus10 OS=Methanococcus voltae (strain
ATCC BAA-1334 / A3) GN=pus10 PE=3 SV=1
Length = 519
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 118/241 (48%), Gaps = 27/241 (11%)
Query: 314 TPIYFGGRYLKYSRNVSQTRWIIDEER------------MGEASIEEIIGGNILPMCRGD 361
PI+ GRY K R + Q+ W R S+EEII ++ + +G
Sbjct: 264 NPIFIKGRYRKTKRGIPQSHWDCRSCRGKGCEKCNFTGKQYPTSVEEIIAEPVMNIAKGS 323
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
HAAGREDIDV+MLG GRPF+ E++ + +LL +I +IN +E V V +L+
Sbjct: 324 GEALHAAGREDIDVKMLGKGRPFVIEVKEPKVRKMDLL--KIMDEINKIEG--VEVSDLE 379
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWI-SRPLQDEDFQT------ISSLKETQILQKTPI 474
G + + E K Y ALV I L++ DF+ L+ +I Q+TP
Sbjct: 380 -YGVKNDVRFFKNEPH-TKTYCALVSIVDEELENHDFENDKIVELSEKLENLRIDQRTPH 437
Query: 475 RVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI 534
RV HRR+ L R + I E I S F L + G YIKE + GD GRT PSI I
Sbjct: 438 RVSHRRADLVRVRNIYKAWCEPIDEKS--FKLTVYCDGGLYIKELISGDEGRTKPSISEI 495
Query: 535 L 535
L
Sbjct: 496 L 496
>sp|Q9YEN2|PUS10_AERPE tRNA pseudouridine synthase Pus10 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=pus10 PE=3 SV=2
Length = 437
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 12/239 (5%)
Query: 316 IYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDV 375
+ + RY K +RN+SQ W E S+E+ + +L + G+ HAAGRED+D
Sbjct: 199 LLYKARYWKLARNISQAYWPTPEGPR-YFSVEQALW-PVLKLTGGERLVVHAAGREDVDA 256
Query: 376 RMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGE 435
RMLGSGRP + E+++ R + ++E+E+ N+ LVR + L +E
Sbjct: 257 RMLGSGRPMIVEVKSPRR--RRIPLEELEAAANAGGKGLVRFRFETAAKRAEVALYKEET 314
Query: 436 AEKQKQYAALVWISRPLQDEDFQTI-SSLKETQILQKTPIRVLHRRSPLEREKIINWMKI 494
A +K Y ALV + + + D + + +L+ I+Q+TP RVLHRR + R + + +
Sbjct: 315 ARVRKVYRALVAVEGGVSEVDVEGLRRALEGAVIMQRTPSRVLHRRPDILRRRRLYSLDC 374
Query: 495 EKIAGSSQYFLLHMC---TQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 550
+ G+ L C + G YIKE V GD GRT PS +LG A ++LDV V+
Sbjct: 375 SPLEGAP----LMECILEAEGGLYIKELVSGDGGRTRPSFAEVLGREAVCIELDVVWVE 429
>sp|B9LQ94|PUS10_HALLT tRNA pseudouridine synthase Pus10 OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=pus10 PE=3 SV=1
Length = 427
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 23/249 (9%)
Query: 320 GRYLKYSRNVSQTRWIIDE----ERMG--------------EASIEEIIGGNILPMCRGD 361
GRY K R++ QT W E R G + S+EE + + G
Sbjct: 170 GRYRKLERDIPQTEWPCRECKGSGRQGADPCDHCGGSGYLYDDSVEEYTAPVVEDVMDGT 229
Query: 362 SYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLK 421
FH AGRED+D MLG+GRPF+ E++ R + +++ IN+ + V V+ L+
Sbjct: 230 EATFHGAGREDVDALMLGTGRPFVIEVEEPRR--RRVDTDRLQADINAFADGAVEVEGLR 287
Query: 422 IVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRS 481
+ ++E +A K+ + A + + + D + L+ T + Q TP RV HRR+
Sbjct: 288 LATYDMVERVKEHDAAKRYR-AEVAFDADVDADALAAAVEELEGTTVEQYTPNRVDHRRA 346
Query: 482 PLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEI 541
+ RE+ + E +++ ++ + + G YIKE + GD GRT PS+ +LG AE+
Sbjct: 347 SITRERDVYEATAE--LDDARHAIVEIHGEGGLYIKELISGDEGRTEPSLAGLLGVGAEV 404
Query: 542 LQLDVTDVK 550
LDV V+
Sbjct: 405 TALDVVAVE 413
>sp|E0SNQ8|PUS10_IGNAA tRNA pseudouridine synthase Pus10 OS=Ignisphaera aggregans (strain
DSM 17230 / JCM 13409 / AQ1.S1) GN=pus10 PE=3 SV=1
Length = 430
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 120/232 (51%), Gaps = 8/232 (3%)
Query: 320 GRYLKYSRNVSQTRWII-DEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRML 378
GRY K R +SQ W+ + + SIEEI ++ GD H AGRED+DVR L
Sbjct: 201 GRYWKLGRMISQNIWLTKNGVKKYPLSIEEI-AKMLVKDGFGDDVVLHIAGREDVDVRTL 259
Query: 379 GSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEK 438
GSGRPF+ EI+ R+ + +K+IE+++NS+ L N+ V + +++G
Sbjct: 260 GSGRPFVLEIKRPRK--RNIDIKDIENRLNSISRWLKFELNM-FVDRDFVSRVKKGCRTS 316
Query: 439 QKQYAALVWISRPLQDEDFQTISSLKETQIL-QKTPIRVLHRRSPLEREKIINWMKIEKI 497
K Y A+V R + ED + + +I+ Q+TP RVL R+ + R + + +K I
Sbjct: 317 YKIYRAIVVADRDIGIEDIKRLEEFFRDRIIEQRTPTRVLRRKKDVLRRRKVFEIKTRVI 376
Query: 498 AGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
S + F + + G Y+KE + GD GRT PS S+L L LD V
Sbjct: 377 --SPRVFEALIKCEGGLYVKELISGDNGRTVPSFSSVLNANTLCLTLDALYV 426
>sp|A4WLQ5|PUS10_PYRAR tRNA pseudouridine synthase Pus10 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=pus10 PE=3 SV=1
Length = 411
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 110/246 (44%), Gaps = 40/246 (16%)
Query: 313 RTPIYFGGRYLKYSRNVSQTRWIIDEERMGE---------ASIEEIIGGNILPMCRGDSY 363
R PI GGRYLK R ++Q + R G A + + GG + +
Sbjct: 190 RNPILIGGRYLKLGRKIAQAK------RFGNVRTTLLEKLAYLRDTFGG--------EDH 235
Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIV 423
H +GRED D RMLGSGRP + E++ ++ + +K V +
Sbjct: 236 VIHVSGREDSDARMLGSGRPLVVEVKQPLRYTAQ---------VAPFRDKDVIFLPVGFT 286
Query: 424 GSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRV--LHRRS 481
++E K Y LV PL+ +D +S+L + Q TP R+ LH R
Sbjct: 287 DRNEVRRLKEKAKTDIKLYRVLVLSESPLKQDDLSKLSALSGATVTQYTPRRIKRLHPRK 346
Query: 482 PLEREKI-INWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAE 540
R + W + S F L++ Q G Y+KEFVHGD GRT P++ +L R E
Sbjct: 347 KRVRMVYDVAWRLV-----SPHVFELYIRCQGGLYVKEFVHGDGGRTAPNVAELLNTRLE 401
Query: 541 ILQLDV 546
+L+LDV
Sbjct: 402 VLELDV 407
>sp|A8MDD0|PUS10_CALMQ tRNA pseudouridine synthase Pus10 OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=pus10 PE=3 SV=1
Length = 401
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 36/238 (15%)
Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
PIY RY K R + Q +G++S+ + ++ R + H AG E +
Sbjct: 195 PIYIEARYRKLIRGIPQ---------VGDSSVASV-AREVVSELRPLNVVLHFAGIEGPE 244
Query: 375 VRMLGSGRPFLFEIQNA--REVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMR 432
VR+LG GRP + E R +P ++ + V++ NLK G ++
Sbjct: 245 VRVLGLGRPMIIEATRPLRRSLPGGIITRH-----------GVQLLNLKAAGKVQVREIK 293
Query: 433 EGEAEKQKQYAALVWISRPLQDEDFQTISS-LKETQILQKTPIRVLHRRSPLEREKIINW 491
E ++ + LV + + DE +++ QI Q R K+I
Sbjct: 294 SKAGELRRVFRILVKLHGSVTDEQLRSLEDYFSNRQIRQSM--------GKGRRVKLIYG 345
Query: 492 MKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
+K+ + GS +++ TQ G ++ F+ G+ T PS+ LG + +++D+ ++
Sbjct: 346 LKVVPVHGSILELIVN--TQGGFSVRRFITGE--GTEPSVSGTLGIKVTPIEIDILNI 399
>sp|A9A215|PUS10_NITMS tRNA pseudouridine synthase Pus10 OS=Nitrosopumilus maritimus
(strain SCM1) GN=pus10 PE=3 SV=1
Length = 381
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 345 SIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIE 404
S+E I + G + KF G ED +LG+GRPF +IQN + +++
Sbjct: 199 SVEGEISQFLFKKLGGTTAKFTWIGGEDKSSLILGTGRPFFVKIQNPHK-------RKLR 251
Query: 405 SKINSLENKLVRVKNLKIVG-SQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSL 463
+K +LE+ ++V N KIV S L E + ++++ D + + L
Sbjct: 252 AKSANLEH--IKVSNFKIVADSPKKPLKFNSSVEARISTSSII---------DAKLLRKL 300
Query: 464 KETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGD 523
K L K PI V + +S EK I +K +K +S F L + G +K FV GD
Sbjct: 301 KN---LTKKPIAV-YEKSGKRSEKRILSIKYKKSDETS--FTLFFKFEGGLPVKRFVTGD 354
Query: 524 LGRTNPSIGSILGCRAEILQLDVTDVKM 551
+P I IL + L+ D DV++
Sbjct: 355 --DVSPGISQILDMSCKCLEFDFHDVEV 380
>sp|E1QUT8|PUS10_VULDI tRNA pseudouridine synthase Pus10 OS=Vulcanisaeta distributa
(strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017)
GN=pus10 PE=3 SV=1
Length = 412
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 29/239 (12%)
Query: 315 PIYFGGRYLKYSRNVS---QTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGRE 371
PIY RY K R ++ Q +W ID ++ H G +
Sbjct: 197 PIYISARYRKVHRLINEEGQVKWPIDR---------------VIQAYNAQDVVIHTGGED 241
Query: 372 DIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLM 431
+ VR+LG+GRP + ++ + P V ++ + + +V + NL V + M
Sbjct: 242 PMGVRVLGNGRPVILQVVKPSKRPD---VNDVYALLKDSGYDIV-LDNLSRVRASAVVKM 297
Query: 432 REGEAEKQKQYAALVWISRPLQDEDFQTISS-LKETQILQKTPIRVLHRRSPLEREKIIN 490
+ + Y L + +E+ +++ + Q++Q V R + R +
Sbjct: 298 KARVRDYVITYRVLAITDNSVTNENIKSLHDYFRNRQVVQ-----VFRRGRRIRRRISMV 352
Query: 491 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
+ ++ L C Q YI+ FVHG LG PSI LG +++D+ ++
Sbjct: 353 YELDGRVIRDRLVEFLIRC-QGNLYIRGFVHGGLGDVEPSIAGTLGFSVRPVEIDILNI 410
>sp|Q9YDC3|TRUB_AERPE Probable tRNA pseudouridine synthase B OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=truB PE=3 SV=2
Length = 354
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 12/105 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y ++ + RP++++ + + L E +I QK P+R +R+ L ++ +IE +
Sbjct: 118 KEYVCVMQLHRPVEEDRLREVLKLFEGEIYQKPPLRSSVKRA-LRTRRVF---RIELLEY 173
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
+ +Y LL + +AGTY+++ IG +LG A + +L
Sbjct: 174 TGKYALLRVDCEAGTYMRKLCW--------DIGLVLGVGAHMREL 210
>sp|Q8TZ08|TRUB_METKA Probable tRNA pseudouridine synthase B OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=truB PE=3 SV=1
Length = 338
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y ++ + + +E+ + + E ILQ+ P+R +R R K I ++ I +I G
Sbjct: 106 KEYVTIMHLHGDVDEEELERVVKEFEGTILQRPPLRSAVKRR--VRPKKIYYIDILEIDG 163
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
L+ + QAGTYI++ H IG LG A + +L
Sbjct: 164 RD--VLMRVGCQAGTYIRKLCH--------DIGEALGVGAHMAEL 198
>sp|Q9V1A5|TRUB_PYRAB Probable tRNA pseudouridine synthase B OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=truB PE=1 SV=1
Length = 334
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y AL+ + + ++ + + E +I+Q+ P+R +R R + + +++I +I G
Sbjct: 108 KEYVALMHLHGDVPEDKIRAVMKEFEGEIIQRPPLRSAVKRR--LRTRKVYYIEILEIDG 165
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
L + +AGTYI+ +H IG LG A + +L
Sbjct: 166 RD--VLFRVGVEAGTYIRSLIH--------HIGLALGVGAHMAEL 200
>sp|B6YSP4|TRUB_THEON Probable tRNA pseudouridine synthase B OS=Thermococcus onnurineus
(strain NA1) GN=truB PE=3 SV=1
Length = 334
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y AL+ + + ++ + E +I+Q+ P+R +R R + + +++I +I G
Sbjct: 108 KEYVALMHLHGEVPEDKIYAVMKEFEGEIIQRPPLRSAVKRR--LRTRKVYYIEILEIDG 165
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
L + +AGTYI+ +H IG LG A + +L
Sbjct: 166 KD--VLFRVGVEAGTYIRSLIH--------HIGLALGVGAHMAEL 200
>sp|A4WH37|TRUB_PYRAR Probable tRNA pseudouridine synthase B OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=truB PE=3 SV=1
Length = 331
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K Y A+ + +E + + + +I QK P+R +R L ++ + +E +
Sbjct: 97 KVYVAVAKFHGDVDEERLRAVLREFQGEIYQKPPLRSAVKRQ-LRTRRVFS---LELLEL 152
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCF 554
+Y ++ M +AGTY ++ +H IG +LG A + +L V + CF
Sbjct: 153 EGRYAVIKMHVEAGTYARKIIH--------DIGEVLGVGANMREL--RRVAVTCF 197
>sp|A3MS77|TRUB_PYRCJ Probable tRNA pseudouridine synthase B OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=truB PE=3 SV=1
Length = 333
Score = 36.2 bits (82), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K Y A+ + E+ + + + +I QK P+R +R L ++ + +E +
Sbjct: 97 KVYIAVAKFHGDVDVENLRRVLQELQGEIYQKPPLRSAVKRQ-LRTRRVYS---LELLEL 152
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCF 554
+Y +L M +AGTY ++ +H +G ILG A + +L V ++CF
Sbjct: 153 DGRYAVLKMHVEAGTYARKLIH--------DLGEILGVGANMREL--RRVAVSCF 197
>sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=truB PE=3 SV=1
Length = 324
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 437 EKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEK 496
E K+Y L+ + R + +E + + + +I Q P++ +R R + I + I +
Sbjct: 95 EAPKEYVCLMRVHREVDEERIREVLGEFQGKIFQIPPLKSAVKRD--LRVRTIYRVDILE 152
Query: 497 IAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDV 549
+ G Q L + +AGTY++++ H +G LG A + +L T V
Sbjct: 153 VDG--QDVLFRIACEAGTYVRKYCH--------DVGEALGAGAHMAELRRTAV 195
>sp|Q97MM1|MURQ_CLOAB N-acetylmuramic acid 6-phosphate etherase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=murQ PE=3 SV=1
Length = 302
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 371 EDIDVRMLGSGR-PFLF-EIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQ-- 426
+D+ + + SGR PF+ ++ AR+ +E++ I + NSL NK V +K IVG +
Sbjct: 134 KDVVIGITASGRTPFVIGAMKEARK--NEIIAIGISNNKNSLINKNVDIKITPIVGPEVI 191
Query: 427 -GWTLMREGEAEK--QKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPL 483
G T M+ G A+K V I + SL +++ + +R++ + +
Sbjct: 192 MGSTRMKAGTAQKLVLNMITTAVMIKLGKVYGNLMIDLSLSNKKLIDR-AVRIIEHATKV 250
Query: 484 EREKIINWMK 493
E+EK + ++K
Sbjct: 251 EKEKAMEYLK 260
>sp|C5A255|TRUB_THEGJ Probable tRNA pseudouridine synthase B OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=truB PE=3 SV=1
Length = 334
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y AL+ + + ++ + + +I+Q+ P+R +R R + + ++++ +I G
Sbjct: 108 KEYVALMHLHGDIPEDKILAVMKEFQGEIIQRPPLRSAVKRR--LRTRKVYYIEVLEIEG 165
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 547
L + +AGTYI+ +H IG LG A + +L T
Sbjct: 166 RD--VLFRVGVEAGTYIRSLIH--------HIGLALGVGAHMAELRRT 203
>sp|Q7LWY0|TRUB_PYRFU Probable tRNA pseudouridine synthase B OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=truB
PE=1 SV=1
Length = 340
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y AL+ + + ++ + E +I+Q+ P+R +R R + + ++++ +I G
Sbjct: 108 KEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRR--LRTRKVYYIEVLEIEG 165
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
L + +AGTYI+ +H IG LG A + +L
Sbjct: 166 RD--VLFRVGVEAGTYIRSLIH--------HIGLALGVGAHMSEL 200
>sp|Q980C3|TRUB_SULSO Probable tRNA pseudouridine synthase B OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=truB
PE=3 SV=1
Length = 251
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSP 482
+G + T + ++ K+Y ++ + E+ I S + +I Q+ P+R +R
Sbjct: 4 IGIENATKIMNYISKGGKEYVCVMQVHCEYNKEELAKIISSFKGEIYQRPPVRSSVKR-- 61
Query: 483 LEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEIL 542
R +I IE + + LL + +GTY+++ H IG I GC A +
Sbjct: 62 --RLRIRRIYDIEILDMDKKLVLLRVNCDSGTYMRKLCH--------DIGIIYGCGAHMR 111
Query: 543 QLDVT 547
+L T
Sbjct: 112 ELRRT 116
>sp|O59357|TRUB_PYRHO Probable tRNA pseudouridine synthase B OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=truB PE=3 SV=1
Length = 334
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y AL+ + + + + E +I+Q+ P+R +R R + + +++I +I G
Sbjct: 108 KEYVALMHLHGDVPENKIIDVMKEFEGEIIQRPPLRSAVKRR--LRTRKVYYIEILEIDG 165
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
L + +AGTYI+ +H IG LG A + +L
Sbjct: 166 RD--VLFKVGVEAGTYIRSLIH--------HIGLALGVGAHMAEL 200
>sp|Q5JJE8|TRUB_PYRKO Probable tRNA pseudouridine synthase B OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=truB PE=3
SV=1
Length = 338
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y AL+ + + ++ + + +I+Q+ P+R +R R + + ++ + +I G
Sbjct: 108 KEYVALMHLHGDVPEDKILAVMREFQGEIIQRPPLRSAVKRR--LRTRKVYYIDVLEIEG 165
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
L + +AGTYI+ +H IG LG A + +L
Sbjct: 166 RD--VLFRVGVEAGTYIRSLIH--------HIGLALGVGAHMAEL 200
>sp|Q1MN41|TRUB_RHIL3 tRNA pseudouridine synthase B OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=truB PE=3 SV=1
Length = 310
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDS------- 362
L P+ FG + VS+ +W+ E+ G A + + +LP+ GD+
Sbjct: 16 LILDKPVDFGS-----TEAVSKIKWLYKAEKAGHAGTLDPLASGMLPIALGDATKTVPYV 70
Query: 363 ------YKFHAA-GREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEI-ESKINSLENKL 414
Y+F + G E + G +++ + PSE +++I I ++
Sbjct: 71 MDGRKIYEFTVSWGEERATDDLEGD------VTKSSDKRPSEQQIRDILPGYIGTISQVP 124
Query: 415 VRVKNLKIVGSQGWTLMREGE 435
+ +KI G + + L REGE
Sbjct: 125 PQFSAIKIAGERAYDLAREGE 145
>sp|Q8GYX9|WDL1_ARATH Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=2 SV=1
Length = 286
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 369 GREDIDVRM-----LGSGRPFLFEIQNAREVPSELLVKE-IESKINSLENKLVRVKNLKI 422
GRE ++V M + S R + A E E VKE E K SL V + +
Sbjct: 2 GREVVEVLMDRNADVSSARVHVAPKIAAEETDEEFEVKECTEEK--SLSENAPNVGSAER 59
Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTI 460
VG+Q R G A+ KQ A L+ + +PLQ E+ + I
Sbjct: 60 VGAQKSPKTRNGNAKVSKQDAPLLAVRKPLQPENKKHI 97
>sp|B1YA64|TRUB_PYRNV Probable tRNA pseudouridine synthase B OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=truB PE=3 SV=1
Length = 331
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 21/102 (20%)
Query: 456 DFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTY 515
+FQ I I Q+ P+R +R R+ IE + +Y ++ M +AGTY
Sbjct: 120 EFQGI-------IYQRPPLRSAVKRQLRTRQV----YSIELLELDGRYAVIKMHVEAGTY 168
Query: 516 IKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE 557
++ +H IG +LG A + +L V ++C+ E
Sbjct: 169 ARKLIH--------DIGEVLGVGANMREL--RRVAVSCYTEE 200
>sp|Q2KDZ7|TRUB_RHIEC tRNA pseudouridine synthase B OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=truB PE=3 SV=1
Length = 310
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 310 LCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDS------- 362
L P+ FG + VS+ +W+ ++ G A + + +LP+ GD+
Sbjct: 16 LILDKPMDFGS-----TEAVSKLKWLYKAQKAGHAGTLDPLASGMLPIALGDATKTVPYV 70
Query: 363 ------YKFHAA-GREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESK-INSLENKL 414
Y+F + G E + G Q++ P+E +++I + I ++
Sbjct: 71 MDGRKIYEFTVSWGEERATDDLEGD------VTQSSERRPTEQQIRDILPRYIGTISQVP 124
Query: 415 VRVKNLKIVGSQGWTLMREGEA 436
+ +KI G + + L R+GEA
Sbjct: 125 PQFSAIKIAGERAYDLARDGEA 146
>sp|Q5NY31|SYK_AROAE Lysine--tRNA ligase OS=Aromatoleum aromaticum (strain EbN1) GN=lysS
PE=3 SV=1
Length = 502
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 460 ISSLKETQILQKTPIRV-LHRRSPLER-EKIINWMKIEKIAGSSQYFLLHMCTQAGTYIK 517
I KE+Q L TP+ V + R L+R ++M I+ ++G Q ++ Y
Sbjct: 51 IYGEKESQELDATPVEVKVAGRIMLKRVMGKASFMTIQDLSGQIQLYVTRDAVGEDVY-A 109
Query: 518 EFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKM 551
+F H D+G ++G++ R L + TD+++
Sbjct: 110 DFKHWDIGDIVGAVGTLFKTRTGELSVKCTDIRL 143
>sp|A1RTL7|TRUB_PYRIL Probable tRNA pseudouridine synthase B OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=truB PE=3 SV=1
Length = 328
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K Y A+ + +E + + + + I QK P+R +R R + +E +
Sbjct: 97 KVYVAVAKFHGDVDEEKLKAVLNEFQGVIYQKPPLRSSVKRQLRTR----HVYSLELLEL 152
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCF 554
+Y ++ M +AGTY ++ +H IG +LG A + +L + ++C+
Sbjct: 153 DGRYAVIKMHVEAGTYARKLIH--------DIGEVLGVGANMREL--RRIAVSCY 197
>sp|Q57612|TRUB_METJA Probable tRNA pseudouridine synthase B OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=truB PE=1 SV=1
Length = 336
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y L+ + R +ED + +I Q+ P++ +R R +I ++E +
Sbjct: 107 KEYVCLMHLHRDASEEDILRVFKEFTGRIYQRPPLKAAVKR----RLRIRKIHELELLDK 162
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCF 554
+ L + Q+GTYI++ IG LG A + +L T K CF
Sbjct: 163 DGKDVLFRVKCQSGTYIRKLCE--------DIGEALGTSAHMQELRRT--KSGCF 207
>sp|Q46GC3|TRUB_METBF Probable tRNA pseudouridine synthase B OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=truB PE=3 SV=1
Length = 338
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 440 KQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEKIAG 499
K+Y L+ + + + + + + I Q PI+ +R + R + I ++++ +I G
Sbjct: 104 KEYVCLLKLHKEMPQKLVRKVCEEFTGPIYQMPPIKSAVKR--VIRIRTIYYLEVLEIEG 161
Query: 500 SSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVT 547
S + L + +AGTYI++ H IG LGC + +L T
Sbjct: 162 S--FVLFRVGCEAGTYIRKLCH--------DIGLALGCGGHMQELRRT 199
>sp|O30001|TRUB_ARCFU Probable tRNA pseudouridine synthase B OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=truB PE=3 SV=1
Length = 325
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 437 EKQKQYAALVWISRPLQDEDFQTISSLKETQILQKTPIRVLHRRSPLEREKIINWMKIEK 496
E K+Y L+ + + ED + + L +I Q+ P++ ++ RE I M++ +
Sbjct: 92 ESSKEYVCLMRLHGDAKREDVEKVMKLFVGRIYQRPPLKSAVKKVLRIRE--IYEMELLE 149
Query: 497 IAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQL 544
+ G L + T++GTYI++ IG +LG A + +L
Sbjct: 150 MEGRD--VLFRVVTESGTYIRKLCR--------DIGEVLGTGAHMQEL 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,488,745
Number of Sequences: 539616
Number of extensions: 8180115
Number of successful extensions: 22476
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 22363
Number of HSP's gapped (non-prelim): 65
length of query: 557
length of database: 191,569,459
effective HSP length: 123
effective length of query: 434
effective length of database: 125,196,691
effective search space: 54335363894
effective search space used: 54335363894
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)