Query 008712
Match_columns 557
No_of_seqs 164 out of 1522
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 15:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361 Chaperonin complex com 100.0 2E-109 5E-114 801.5 38.9 523 1-533 2-530 (543)
2 TIGR02344 chap_CCT_gamma T-com 100.0 2E-106 5E-111 876.6 60.4 520 7-527 4-523 (525)
3 TIGR02339 thermosome_arch ther 100.0 5E-106 1E-110 872.7 60.1 515 6-524 3-518 (519)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 1E-104 2E-109 859.9 61.2 514 7-528 4-528 (531)
5 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1E-104 2E-109 863.5 59.8 511 14-527 3-527 (527)
6 cd03343 cpn60 cpn60 chaperonin 100.0 1E-104 3E-109 863.0 59.8 514 7-525 3-516 (517)
7 cd03339 TCP1_epsilon TCP-1 (CT 100.0 4E-104 8E-109 859.0 59.2 516 3-524 5-526 (526)
8 PTZ00212 T-complex protein 1 s 100.0 9E-104 2E-108 855.7 60.9 513 3-527 6-527 (533)
9 TIGR02343 chap_CCT_epsi T-comp 100.0 7E-104 2E-108 855.2 59.0 516 4-525 10-531 (532)
10 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2E-103 4E-108 851.3 61.1 508 8-527 2-515 (517)
11 cd03340 TCP1_eta TCP-1 (CTT or 100.0 2E-103 4E-108 853.4 60.6 512 6-526 3-520 (522)
12 TIGR02340 chap_CCT_alpha T-com 100.0 4E-103 1E-107 851.5 61.6 514 13-529 6-533 (536)
13 TIGR02342 chap_CCT_delta T-com 100.0 7E-103 2E-107 846.4 59.2 507 14-525 4-516 (517)
14 TIGR02345 chap_CCT_eta T-compl 100.0 1E-102 2E-107 845.8 58.4 514 3-526 2-520 (522)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 3E-102 6E-107 843.7 59.3 506 13-524 2-514 (515)
16 TIGR02341 chap_CCT_beta T-comp 100.0 7E-102 2E-106 837.2 61.2 510 7-528 2-517 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 1E-101 2E-106 838.0 60.9 512 7-528 5-522 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 3E-100 6E-105 819.1 56.4 480 10-526 3-483 (484)
19 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4E-100 8E-105 818.1 53.0 475 7-524 4-479 (480)
20 KOG0358 Chaperonin complex com 100.0 2.3E-99 5E-104 730.7 34.7 507 13-525 20-533 (534)
21 KOG0363 Chaperonin complex com 100.0 3.6E-97 8E-102 712.3 38.8 519 3-533 2-526 (527)
22 cd03341 TCP1_theta TCP-1 (CTT 100.0 4E-95 9E-100 777.6 53.8 463 15-525 4-471 (472)
23 cd00309 chaperonin_type_I_II c 100.0 8.1E-95 1.8E-99 777.4 54.8 462 14-524 3-464 (464)
24 COG0459 GroL Chaperonin GroEL 100.0 1.9E-94 4.1E-99 768.2 50.5 507 11-530 3-518 (524)
25 KOG0364 Chaperonin complex com 100.0 1.2E-94 2.5E-99 710.1 28.4 524 1-529 1-524 (527)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.4E-91 3E-96 760.0 50.5 483 31-527 1-485 (485)
27 PRK00013 groEL chaperonin GroE 100.0 7.3E-90 1.6E-94 743.0 52.8 462 13-528 4-526 (542)
28 PRK12849 groEL chaperonin GroE 100.0 1.1E-89 2.4E-94 741.7 53.6 461 14-530 5-527 (542)
29 PRK12851 groEL chaperonin GroE 100.0 4E-89 8.7E-94 738.0 53.8 462 13-529 5-527 (541)
30 PTZ00114 Heat shock protein 60 100.0 1.7E-88 3.8E-93 736.0 55.2 463 13-529 16-543 (555)
31 PRK12850 groEL chaperonin GroE 100.0 2.4E-88 5.1E-93 732.5 54.3 471 13-538 5-537 (544)
32 cd03344 GroEL GroEL_like type 100.0 7.1E-88 1.5E-92 726.0 52.7 456 13-524 2-519 (520)
33 PRK12852 groEL chaperonin GroE 100.0 1.7E-87 3.6E-92 727.8 53.6 462 13-529 5-528 (545)
34 TIGR02348 GroEL chaperonin Gro 100.0 1.3E-87 2.9E-92 725.4 52.0 458 13-526 3-522 (524)
35 KOG0360 Chaperonin complex com 100.0 1.3E-89 2.8E-94 680.6 31.1 517 12-532 12-542 (545)
36 CHL00093 groEL chaperonin GroE 100.0 4.9E-86 1.1E-90 713.9 49.5 462 13-527 4-526 (529)
37 PRK14104 chaperonin GroEL; Pro 100.0 2E-85 4.2E-90 709.2 52.9 462 13-529 5-528 (546)
38 PLN03167 Chaperonin-60 beta su 100.0 7.4E-86 1.6E-90 715.9 47.9 466 13-530 58-585 (600)
39 KOG0362 Chaperonin complex com 100.0 2.1E-85 4.6E-90 655.2 45.9 511 2-528 7-523 (537)
40 KOG0359 Chaperonin complex com 100.0 6.4E-81 1.4E-85 612.2 27.2 495 18-525 16-514 (520)
41 KOG0357 Chaperonin complex com 100.0 1.2E-67 2.6E-72 504.2 22.3 386 2-528 9-398 (400)
42 KOG0356 Mitochondrial chaperon 100.0 2.6E-60 5.6E-65 482.7 30.5 460 13-530 18-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 1.6E-39 3.6E-44 320.8 27.6 235 164-408 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 3.6E-35 7.7E-40 282.5 24.9 208 148-404 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 9.4E-22 2E-26 220.0 18.1 239 165-413 332-575 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 53.8 44 0.00096 26.8 6.2 36 278-314 45-80 (94)
47 COG1433 Uncharacterized conser 50.5 69 0.0015 27.7 6.9 51 278-329 57-107 (121)
48 cd00851 MTH1175 This uncharact 47.9 56 0.0012 26.7 6.0 38 278-316 55-92 (103)
49 cd00562 NifX_NifB This CD repr 40.0 84 0.0018 25.5 5.8 37 279-316 54-90 (102)
50 PRK13600 putative ribosomal pr 38.2 1.5E+02 0.0032 23.9 6.5 52 275-329 18-73 (84)
51 PRK07283 hypothetical protein; 35.4 1.5E+02 0.0033 24.5 6.5 49 278-329 26-78 (98)
52 TIGR00129 fdhD_narQ formate de 30.2 77 0.0017 30.9 4.6 42 278-319 184-225 (237)
53 PRK13601 putative L7Ae-like ri 28.5 2.4E+02 0.0052 22.5 6.3 50 278-330 16-69 (82)
54 PF07278 DUF1441: Protein of u 27.5 3.7E+02 0.0079 24.3 7.9 67 378-460 60-126 (152)
55 PRK00724 formate dehydrogenase 27.3 91 0.002 30.9 4.6 42 277-318 212-253 (263)
56 cd01143 YvrC Periplasmic bindi 26.4 2E+02 0.0044 26.2 6.7 50 280-329 54-110 (195)
57 COG3962 Acetolactate synthase 26.2 57 0.0012 34.8 2.9 39 389-428 217-255 (617)
58 PRK06683 hypothetical protein; 26.1 2.7E+02 0.0059 22.2 6.2 50 278-330 19-72 (82)
59 PRK07714 hypothetical protein; 25.6 2.9E+02 0.0063 22.8 6.7 50 277-329 25-78 (100)
60 TIGR03659 IsdE heme ABC transp 25.4 1.7E+02 0.0038 29.1 6.4 52 279-330 84-141 (289)
61 cd01144 BtuF Cobalamin binding 25.1 2.1E+02 0.0045 27.4 6.7 52 279-330 50-108 (245)
62 PRK04175 rpl7ae 50S ribosomal 25.1 2.7E+02 0.0058 24.1 6.5 43 277-319 37-84 (122)
63 PRK13602 putative ribosomal pr 24.5 3.1E+02 0.0068 21.8 6.4 51 277-330 18-72 (82)
64 TIGR03677 rpl7ae 50S ribosomal 24.3 2.7E+02 0.0059 23.8 6.4 43 277-319 33-80 (117)
65 COG1526 FdhD Uncharacterized p 24.3 1E+02 0.0023 30.5 4.3 42 278-319 213-254 (266)
66 PRK09534 btuF corrinoid ABC tr 23.5 2E+02 0.0044 29.8 6.6 51 279-329 112-169 (359)
67 KOG1481 Cysteine synthase [Ami 23.0 45 0.00098 33.1 1.4 20 394-413 84-103 (391)
68 PTZ00106 60S ribosomal protein 22.5 2.9E+02 0.0064 23.3 6.1 52 276-330 31-87 (108)
69 PF02634 FdhD-NarQ: FdhD/NarQ 22.4 1.1E+02 0.0024 29.8 4.0 40 278-317 184-223 (236)
70 PF02603 Hpr_kinase_N: HPr Ser 21.8 1E+02 0.0022 26.8 3.3 43 272-314 67-111 (127)
71 PRK01018 50S ribosomal protein 21.4 3.8E+02 0.0083 22.1 6.6 50 277-329 23-77 (99)
72 KOG2663 Acetolactate synthase, 21.4 95 0.0021 30.3 3.2 28 372-400 121-148 (309)
No 1
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-109 Score=801.45 Aligned_cols=523 Identities=35% Similarity=0.628 Sum_probs=503.1
Q ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHH
Q 008712 1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~ 80 (557)
||+|+.++++|++.++|..+.-+|+.||..+++.++|||||+|++|+|++..|+++|||||+||||.|++-||+++.+++
T Consensus 2 m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVd 81 (543)
T KOG0361|consen 2 MQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVD 81 (543)
T ss_pred CCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCC----HHHHHHHHHH
Q 008712 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND----RATMLGLVKS 156 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~----~~~l~~ia~t 156 (557)
++++||.++||||||+|+|++++|+++--+++.|+||..|+++|++|...+++.++++++.++..+ ++.|+++|.|
T Consensus 82 ia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T 161 (543)
T KOG0361|consen 82 IARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAAT 161 (543)
T ss_pred HHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887433 5679999999
Q ss_pred HhhcccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC--CCccccC
Q 008712 157 CIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIV 234 (557)
Q Consensus 157 ~l~sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~--~~~~~~~ 234 (557)
+++||+.+++.++|+++++||+..+.. ..+. ++|-|+|++||+++||.+++|+-|.+.|++.+ +.|+++.
T Consensus 162 ~lsSKlI~~ek~fF~~MvVDAV~~ld~-------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~ 233 (543)
T KOG0361|consen 162 ALSSKLIRQEKEFFAKMVVDAVLTLDN-------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFL 233 (543)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHhhcc-------ccch-hhcceeecCCCccchhhhccceeeeehccccchhhCccccC
Confidence 999999999999999999999998852 1222 37999999999999999999999999988753 7799999
Q ss_pred CceEEEEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEec
Q 008712 235 NPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRR 314 (557)
Q Consensus 235 n~kIll~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~ 314 (557)
||||+++|..||.+..+.++++.+.++++++.++..||+++.++++++..+|+|||++.-.|.|.+.+||++++|.|.+|
T Consensus 234 NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGR 313 (543)
T KOG0361|consen 234 NPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGR 313 (543)
T ss_pred CceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHH
Q 008712 315 LRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDA 394 (557)
Q Consensus 315 v~~~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~da 394 (557)
++.+||.|+..++|+++.++..++.++.||. |..|+++++|.+||.+|+||+..+.||++|||+.++.++|.+|++|||
T Consensus 314 V~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~-C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDA 392 (543)
T KOG0361|consen 314 VPEEDLNRVMQACGGSIQTTVSDIKEEVLGT-CALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDA 392 (543)
T ss_pred CCHHHHHHHHHhcCcchhhhhhhcchhhcch-hhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 008712 395 MSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGE 474 (557)
Q Consensus 395 l~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~ 474 (557)
++++|.++++..+|+|||++||.++++|++++.++.+++|+.+.+|++|||.||++||.|+|+|...++++||..|.+|.
T Consensus 393 ImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~ 472 (543)
T KOG0361|consen 393 IMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGE 472 (543)
T ss_pred HHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CceeeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCccCCCCC
Q 008712 475 NAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPG 533 (557)
Q Consensus 475 ~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~~~~ 533 (557)
.|+|+|..++.+.|+++.+||||..||+++++.|+|+||++|.+|+.|...++..+|.
T Consensus 473 -~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p 530 (543)
T KOG0361|consen 473 -KWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPP 530 (543)
T ss_pred -ceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCC
Confidence 9999999999999999999999999999999999999999999999999887655443
No 2
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-106 Score=876.64 Aligned_cols=520 Identities=71% Similarity=1.115 Sum_probs=497.5
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhh
Q 008712 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86 (557)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~ 86 (557)
+++++.+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccch
Q 008712 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166 (557)
Q Consensus 87 ~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~ 166 (557)
+++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++..+.+.|.++++|++++|+.++|
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~ 163 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRW 163 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999877788899999999999999999
Q ss_pred hHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCc
Q 008712 167 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246 (557)
Q Consensus 167 ~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le 246 (557)
.+.|++++++|+..++++..++...+|++++|+|++++|++++||++++|++|++++.++ +|+++++||+|++++++|+
T Consensus 164 ~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~Le 242 (525)
T TIGR02344 164 SDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP-KMRRYIENPRIVLLDCPLE 242 (525)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC-CCccccCCCCEEEEecccc
Confidence 999999999999999863212234677776799999999999999999999999999998 8999999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHH
Q 008712 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (557)
Q Consensus 247 ~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~ 326 (557)
+++++.++++.+.+++++.++++.|++++++++++|.+.+++||+++++|++.++++|.++||++++++++++|+|||++
T Consensus 243 ~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~ 322 (525)
T TIGR02344 243 YKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARA 322 (525)
T ss_pred cccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 008712 327 CGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (557)
Q Consensus 327 tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~ 406 (557)
|||++++++++++++++|+.|+.|+++++|+++|++|++|+++++|||+|||+|+.+++|+||+++||++++++++++++
T Consensus 323 tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~ 402 (525)
T TIGR02344 323 CGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPK 402 (525)
T ss_pred hCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999966999999999999999999999899999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCc
Q 008712 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGA 486 (557)
Q Consensus 407 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~ 486 (557)
+|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++++.++|+|+.+|+
T Consensus 403 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~ 482 (525)
T TIGR02344 403 LLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGK 482 (525)
T ss_pred cccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCc
Confidence 99999999999999999988888899999999999999999999999999999999999999998764468999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCc
Q 008712 487 ISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 487 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 527 (557)
+.||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 483 ~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 483 IVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred cccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999998765
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=5.3e-106 Score=872.73 Aligned_cols=515 Identities=41% Similarity=0.685 Sum_probs=493.7
Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhh
Q 008712 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~ 85 (557)
.+++++.+.++|.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 3 FILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccc-c
Q 008712 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFT-S 164 (557)
Q Consensus 86 ~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~-~ 164 (557)
++++||||||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+.+.|.++|+|+++||+. +
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~ 162 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAE 162 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999876788999999999999998 6
Q ss_pred chhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecC
Q 008712 165 QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (557)
Q Consensus 165 ~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~ 244 (557)
.+.++|++++++|+.++++...+|...+|++ +|+|++++|++.++|++++|++|++++.++ +|+++++||+|++++++
T Consensus 163 ~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~-~m~~~i~n~kIlll~~~ 240 (519)
T TIGR02339 163 VTKDKLANLVVEAVKQVAEKRGDGKYYVDLD-NIKIEKKTGGSIDDTELVEGIVVDKEPVHP-GMPKRVKNAKIALLDAP 240 (519)
T ss_pred hhHHHHHHHHHHHHHHHhhhccCCCcccCHH-HeEEEEccCcChhcceeEeeEEEecCCCCC-CCccccCCCcEEEEecc
Confidence 8899999999999999974222454457775 699999999999999999999999999998 89999999999999999
Q ss_pred CccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHH
Q 008712 245 LEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (557)
Q Consensus 245 Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~ 324 (557)
||+++++.+.++.+++.+++.+++++|++++++++++|++.|++||+++++|++.++++|.++||++++++++++|+||+
T Consensus 241 Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa 320 (519)
T TIGR02339 241 LEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLA 320 (519)
T ss_pred ccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 008712 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (557)
Q Consensus 325 ~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~ 404 (557)
++||+++++++++++++.+|+ |+.|+++++|+++|++|++|..+..|||+|||+|+.+++|++|+++||++++++++++
T Consensus 321 ~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (519)
T TIGR02339 321 RATGAKIVSSIKEITESDLGY-AGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASALED 399 (519)
T ss_pred HHhCCEEeCchhhCChhhccC-CceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 9999999999999999999988899999999999999999999999999999999999
Q ss_pred CCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCC
Q 008712 405 PKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNT 484 (557)
Q Consensus 405 g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~ 484 (557)
|++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+. .++|||+.+
T Consensus 400 ~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~ 478 (519)
T TIGR02339 400 GKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGN-KNAGINVFT 478 (519)
T ss_pred CCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC-CceeEEcCC
Confidence 9999999999999999999988888899999999999999999999999999999999999999987664 689999999
Q ss_pred CccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhc
Q 008712 485 GAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 485 ~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 524 (557)
|++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 479 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 479 GEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred CCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 9999999999999999999999999999999999999985
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-105 Score=859.94 Aligned_cols=514 Identities=30% Similarity=0.559 Sum_probs=490.2
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhh
Q 008712 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86 (557)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~ 86 (557)
+++++.+..+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+.+++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd 83 (531)
T TIGR02347 4 LLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQD 83 (531)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccC-CCCHHHHHHHHHHHhhcccccc
Q 008712 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPID-TNDRATMLGLVKSCIGTKFTSQ 165 (557)
Q Consensus 87 ~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~-~~~~~~l~~ia~t~l~sK~~~~ 165 (557)
+++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++++. ..+.+.|.++++|+++||+.++
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~ 163 (531)
T TIGR02347 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPID 163 (531)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchh
Confidence 999999999999999999999999999999999999999999999999999998763 4568899999999999999999
Q ss_pred hhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCC
Q 008712 166 FGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPL 245 (557)
Q Consensus 166 ~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L 245 (557)
++++|++++++|+..+++ ++. .+|++ +|++.+..|++.++|++++|++|++++.++ .|+++++||+|++++++|
T Consensus 164 ~~~~ls~iv~~Av~~v~~---~~~-~i~~~-~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~-~~~~~~~n~~Ill~~~~l 237 (531)
T TIGR02347 164 LADQLTEIVVDAVLAIKK---DGE-QIDLF-MVEIMEMKHKSATDTTLIRGLVLDHGARHP-DMPRRVKNAYILTCNVSL 237 (531)
T ss_pred hHHHHHHHHHHHHHHHhh---cCC-CCChh-HeEEEEecCCCccccEEEeeEEEecCcCCC-CCceeccCceEEEEeCCC
Confidence 999999999999999975 232 46665 599999999999999999999999999998 899999999999999999
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEeCCCCCHHHHHHHHHcCCeEEecC
Q 008712 246 EYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFK-------PD---LVITEKGLSDLACHYLSKAGVSAIRRL 315 (557)
Q Consensus 246 e~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~-------~~---lIi~~~~i~~~al~~L~~~~I~~i~~v 315 (557)
++.+++..+.+.+.+.+++..++..|++++++++++|.+.+ ++ ||+++++|++.+++||.++||++++++
T Consensus 238 e~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv 317 (531)
T TIGR02347 238 EYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRA 317 (531)
T ss_pred CCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccC
Confidence 99999999999999999999999999999999999999866 25 999999999999999999999999999
Q ss_pred ChhHHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHH
Q 008712 316 RKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAM 395 (557)
Q Consensus 316 ~~~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal 395 (557)
++++|+|||++|||++++++++++++++|+ |+.|+++.+|+++|++|++|.++++|||+|||+|+.+++|++|+++||+
T Consensus 318 ~~~~le~ia~~tGa~~i~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl 396 (531)
T TIGR02347 318 KRRNMERLTLACGGEALNSVEDLTPECLGW-AGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGL 396 (531)
T ss_pred CHHHHHHHHHHhCCEEecccccCCcccccc-ceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999998999999999999999999999999999
Q ss_pred HHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 008712 396 SVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGEN 475 (557)
Q Consensus 396 ~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~ 475 (557)
+++++++++|++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+.
T Consensus 397 ~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~- 475 (531)
T TIGR02347 397 RAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGG- 475 (531)
T ss_pred HHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccC-
Confidence 9999999999999999999999999999988888899999999999999999999999999999999999999997764
Q ss_pred ceeeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCcc
Q 008712 476 AWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 476 ~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 528 (557)
.++|+|+.+|.+.||++.|||||+.||+++|+.|+|+|++|||||++|+..|+
T Consensus 476 ~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 476 EVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred CceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 67999999999999999999999999999999999999999999999988765
No 5
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-104 Score=863.52 Aligned_cols=511 Identities=32% Similarity=0.508 Sum_probs=484.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCCh
Q 008712 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (557)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (557)
..+|.+++..|++||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhh-cccccCCCCHHHHHHHHHHHhhcccccchhHHHHH
Q 008712 94 TSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIAD 172 (557)
Q Consensus 94 tt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~ 172 (557)
||+++|+++||+++.+++++|+||..|++||++|++.++++|++ ++++++..+.+.|.++++|+++||+.+.+.++|++
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~ 162 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFAN 162 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999986 89998766788999999999999999888899999
Q ss_pred HHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCccccccc
Q 008712 173 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252 (557)
Q Consensus 173 li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~~ 252 (557)
++++|+..++....+|...+|++ +|+|++..|+++++|++++|++|++++.++ +|+++++||+|++++++|++.+++.
T Consensus 163 l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~~~Ggs~~~s~li~Givi~~~~~~~-~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 163 MVVDAILAVKTTNEKGKTKYPIK-AVNILKAHGKSAKESYLVNGYALNCTRASQ-GMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHhhcccccCCCccCHH-HeEEEEecCcChhhcceeeeEEEecccCCC-CCcccccCCcEEEEeccCCCCcccc
Confidence 99999999863212343346765 599999999999999999999999999998 8999999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeec
Q 008712 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (557)
Q Consensus 253 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~~ii 332 (557)
+.++.+++.++++.+.+.|+++++++++.|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|||+++
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii 320 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLV 320 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC------CCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 008712 333 NRPDELQ------ESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (557)
Q Consensus 333 ~~~~~l~------~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~ 406 (557)
+++++++ ++++|+ |+.|+++++|+++|++|++|+++++|||+|||+|+.+++|++|+++||++++++++++|+
T Consensus 321 ~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~ 399 (527)
T cd03335 321 STLANLEGEETFDPSYLGE-AEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNS 399 (527)
T ss_pred cChhhcCcccccCHhhCcc-CceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9986653 347999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-------Cceee
Q 008712 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGE-------NAWIG 479 (557)
Q Consensus 407 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-------~~~~G 479 (557)
+|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|..+. ++++|
T Consensus 400 vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~G 479 (527)
T cd03335 400 VVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYG 479 (527)
T ss_pred EeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEe
Confidence 99999999999999999998888899999999999999999999999999999999999999997663 46899
Q ss_pred EeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCc
Q 008712 480 IDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 480 id~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 527 (557)
||+.+|++.||++.|||||+.+|.++|+.|+|+|++|||||++|...|
T Consensus 480 id~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 480 LDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred EECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 999999999999999999999999999999999999999999997654
No 6
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.3e-104 Score=862.95 Aligned_cols=514 Identities=42% Similarity=0.705 Sum_probs=492.7
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhh
Q 008712 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86 (557)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~ 86 (557)
+++++.+..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccch
Q 008712 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166 (557)
Q Consensus 87 ~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~ 166 (557)
+++||||||+++|+++|++++.+++++|+||..|++||++|++.++++|++++++++..+.+.+.++|+|+++||+.+.+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~ 162 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAA 162 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999766788999999999999999999
Q ss_pred hHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCc
Q 008712 167 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLE 246 (557)
Q Consensus 167 ~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le 246 (557)
.++|++++++|+.+++.+. .+...+|++ +|+|.+++|+++++|++++|++|++++.++ .|+++++||||++++++||
T Consensus 163 ~~~l~~l~~~A~~~v~~~~-~~~~~~~~~-~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~-~m~~~~~n~~Illl~~~Le 239 (517)
T cd03343 163 KDKLADLVVDAVLQVAEKR-DGKYVVDLD-NIKIEKKTGGSVDDTELIRGIVIDKEVVHP-GMPKRVENAKIALLDAPLE 239 (517)
T ss_pred HHHHHHHHHHHHHHhhhcc-CCCccccHH-HeeEEeecCcCHHHcceeeeEEEeccCCCC-CCccccCCCcEEEEecccc
Confidence 9999999999999997521 122357765 699999999999999999999999999998 8999999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHH
Q 008712 247 YKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (557)
Q Consensus 247 ~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~ 326 (557)
+++++.++++.+++.+++.+++++|+++++++++.|++.|++||+++++|++.+++||.++||++++++++++|+||+++
T Consensus 240 ~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~ 319 (517)
T cd03343 240 VKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARA 319 (517)
T ss_pred CCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 008712 327 CGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPK 406 (557)
Q Consensus 327 tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~ 406 (557)
||+++++++++++++++|+ |+.|++.++|+++|++|++|.+++.|||+|||+|+.+++|++|+++||++++|+++++|+
T Consensus 320 tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~ 398 (517)
T cd03343 320 TGAKIVTNIDDLTPEDLGE-AELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGK 398 (517)
T ss_pred hCCEEecchhhCChhhCCc-cceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 999999999999999999999889999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCc
Q 008712 407 LVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGA 486 (557)
Q Consensus 407 vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~ 486 (557)
+|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+. .++|+|+.+|+
T Consensus 399 vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~G~d~~~g~ 477 (517)
T cd03343 399 VVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGN-KNAGLDVYTGE 477 (517)
T ss_pred eeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC-CceeeecCCCC
Confidence 99999999999999999988888899999999999999999999999999999999999999887664 68999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcC
Q 008712 487 ISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 487 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 525 (557)
+.||++.|||||+.||+++|+.|+|+|++|||||++|+.
T Consensus 478 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 478 VVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 999999999999999999999999999999999999964
No 7
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-104 Score=859.01 Aligned_cols=516 Identities=35% Similarity=0.602 Sum_probs=488.3
Q ss_pred CCccccccc--ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHH
Q 008712 3 SPVLVLKDS--LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 3 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~ 80 (557)
+|..+++++ .+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~ 84 (526)
T cd03339 5 RPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVE 84 (526)
T ss_pred CCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHH
Confidence 454556776 368899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCC--CCHHHHHHHHHHHh
Q 008712 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT--NDRATMLGLVKSCI 158 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~~~~~l~~ia~t~l 158 (557)
++++|++++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++. .+.+.|.++++|++
T Consensus 85 ~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl 164 (526)
T cd03339 85 LSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSL 164 (526)
T ss_pred HHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999998853 35788999999999
Q ss_pred hcccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceE
Q 008712 159 GTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRI 238 (557)
Q Consensus 159 ~sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kI 238 (557)
++|+.+.+.+.|++++++|+..+... ....+|++ +|+|.+++|++++||++++|++|++++.++ .|++.++||||
T Consensus 165 ~sk~~~~~~~~~s~i~v~av~~i~~~---~~~~~d~~-~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~-~m~~~~~n~kI 239 (526)
T cd03339 165 GSKIVSRCHRQFAEIAVDAVLSVADL---ERKDVNFE-LIKVEGKVGGRLEDTKLVKGIVIDKDFSHP-QMPKEVKDAKI 239 (526)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhc---CCCccchH-HeEEEEecCcCHHHcceeeeEEEecccCCC-CCCceecCCCE
Confidence 99999888999999999999988631 11245544 699999999999999999999999999998 89999999999
Q ss_pred EEEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChh
Q 008712 239 ILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (557)
Q Consensus 239 ll~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~ 318 (557)
++++++||+++.+.+.++.++++++++++.++|+++++++++++.+.|++||+++++|++.+++||.++||+++++++++
T Consensus 240 ~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~ 319 (526)
T cd03339 240 AILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGV 319 (526)
T ss_pred EEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECC--eEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHH
Q 008712 319 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMS 396 (557)
Q Consensus 319 ~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~--~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~ 396 (557)
+|+||+++||++++++++++++..+|+ |+.|++.++|. ++|+++++|++++.+||+|||+|+.+++|+||+++||++
T Consensus 320 ~LerIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~ 398 (526)
T cd03339 320 EIELIAIATGGRIVPRFEDLSPEKLGK-AGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALC 398 (526)
T ss_pred HHHHHHHHhCCEEecchhhCChhhccc-CceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999985 689999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 008712 397 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENA 476 (557)
Q Consensus 397 ~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 476 (557)
++++++++|++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+++.
T Consensus 399 ~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~ 478 (526)
T cd03339 399 VVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNP 478 (526)
T ss_pred HHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998888888999999999999999999999999999999999999999755446
Q ss_pred eeeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhc
Q 008712 477 WIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 477 ~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 524 (557)
++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.
T Consensus 479 ~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 479 HLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred eEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 899999999999999999999999999999999999999999999874
No 8
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=8.5e-104 Score=855.69 Aligned_cols=513 Identities=33% Similarity=0.523 Sum_probs=488.7
Q ss_pred CCcccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecC-----CCCEEEeccHHHHhhcccccChHHHH
Q 008712 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA-----SGGIVVTNDGNAILRELDVAHPAAKS 77 (557)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~-----~g~~~iTnDG~tIlk~l~~~hP~a~l 77 (557)
.|..+++++.+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akl 85 (533)
T PTZ00212 6 VPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKI 85 (533)
T ss_pred cchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHH
Confidence 4555778888899999999999999999999999999999999999998 59999999999999999999999999
Q ss_pred HHHHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCC---HHHHHHHH
Q 008712 78 MIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTND---RATMLGLV 154 (557)
Q Consensus 78 l~~~~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~---~~~l~~ia 154 (557)
+++++++|++++||||||+|+|+++||+++.+++++|+||..|++||++|++.++++|++++++++..+ .+.|.++|
T Consensus 86 l~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va 165 (533)
T PTZ00212 86 LVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIA 165 (533)
T ss_pred HHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986533 57899999
Q ss_pred HHHhhcccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccC
Q 008712 155 KSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIV 234 (557)
Q Consensus 155 ~t~l~sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~ 234 (557)
+|+++||+.+.+.+.|++++++|+..+.. .+|++ +|++++++|+++++|++++|+++++++.+ .|+++++
T Consensus 166 ~t~l~sk~~~~~~~~l~~i~~~av~~i~~-------~~~~~-~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~--~~~~~i~ 235 (533)
T PTZ00212 166 RTTLSSKLLTVEKDHFAKLAVDAVLRLKG-------SGNLD-YIQIIKKPGGTLRDSYLEDGFILEKKIGV--GQPKRLE 235 (533)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHhc-------cCCcc-ceEEEEecCcCccccEEEEeEEEecccCC--CCCcccc
Confidence 99999999999999999999999998852 13443 59999999999999999999999999876 5799999
Q ss_pred CceEEEEecCCccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEe
Q 008712 235 NPRIILLDSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIR 313 (557)
Q Consensus 235 n~kIll~~~~Le~~k~~~-~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~ 313 (557)
||||++++++||+++++. +.++.+++.+++..+.+.|+++++++++.|++.|+++++++++|++.++++|.++||++++
T Consensus 236 n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr 315 (533)
T PTZ00212 236 NCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIE 315 (533)
T ss_pred CCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEe
Confidence 999999999999999887 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHH
Q 008712 314 RLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQD 393 (557)
Q Consensus 314 ~v~~~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~d 393 (557)
++++.+++||+++|||+++++++++++.++|+ |+.|++..+|+++|++|++|+.+++|||+|||+|+.+++|+||+++|
T Consensus 316 ~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~D 394 (533)
T PTZ00212 316 HADFDGMERLAAALGAEIVSTFDTPEKVKLGH-CDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHD 394 (533)
T ss_pred cCCHHHHHHHHHHhCCEEeecCCCCCHHHccC-CceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 008712 394 AMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANG 473 (557)
Q Consensus 394 al~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~ 473 (557)
||+++|+++++|++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++
T Consensus 395 Al~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~ 474 (533)
T PTZ00212 395 ALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKG 474 (533)
T ss_pred HHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999877
Q ss_pred CCceeeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCc
Q 008712 474 ENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 474 ~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 527 (557)
+ .++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 475 ~-~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 475 N-KTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred C-CccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 4 7899999999999999999999999999999999999999999999998754
No 9
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.1e-104 Score=855.24 Aligned_cols=516 Identities=36% Similarity=0.594 Sum_probs=489.0
Q ss_pred Ccccccc--cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHH
Q 008712 4 PVLVLKD--SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIEL 81 (557)
Q Consensus 4 ~~~~~~~--~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~ 81 (557)
|..++++ +.+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~ 89 (532)
T TIGR02343 10 PFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVEL 89 (532)
T ss_pred CchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHH
Confidence 4445566 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCC--CCHHHHHHHHHHHhh
Q 008712 82 SRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT--NDRATMLGLVKSCIG 159 (557)
Q Consensus 82 ~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~--~~~~~l~~ia~t~l~ 159 (557)
+++|++++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++. .+.+.|.++++|+++
T Consensus 90 a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~ 169 (532)
T TIGR02343 90 SKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLG 169 (532)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999998743 357889999999999
Q ss_pred cccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEE
Q 008712 160 TKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRII 239 (557)
Q Consensus 160 sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIl 239 (557)
+|+.+.+.+.|++++++|+..+... ....+|++ +|+|.+++|+++++|++++|++|++++.++ .|++.++||||+
T Consensus 170 sK~~~~~~~~ls~i~~~av~~i~~~---~~~~~d~~-~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~-~m~~~~~n~kI~ 244 (532)
T TIGR02343 170 SKIVSKCHRRFAEIAVDAVLMVADM---ERRDVDFD-LIKVEGKVGGSLEDTKLIKGIIIDKDFSHP-QMPKEVKDAKIA 244 (532)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhc---CCCcCCHH-HeeEEEecCCCcccceeEeeEEEecCcCCC-CCCeeecCCcEE
Confidence 9998888999999999999988531 11256665 699999999999999999999999999998 899999999999
Q ss_pred EEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhH
Q 008712 240 LLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 240 l~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~ 319 (557)
+++++|++++.+.+.++.+++.+++..+.+.|++++++++++|++.|++||+++++|++.+++||.++||++++++++++
T Consensus 245 l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~ 324 (532)
T TIGR02343 245 ILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHE 324 (532)
T ss_pred EEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECC--eEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHH
Q 008712 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (557)
Q Consensus 320 l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~--~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~ 397 (557)
|+||+++|||++++++++++++++|+ |+.|++..+|+ ++|+++++|++++++||+|||+|+.+++|+||+++||+++
T Consensus 325 l~~Ia~~tGa~~i~~l~~~~~~~LG~-a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~ 403 (532)
T TIGR02343 325 LELIAIATGGRIVPRFEELSEDKLGK-AGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCV 403 (532)
T ss_pred HHHHHHHhCCEEecccccCCHhHCcc-cceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999987 4899999999899999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCce
Q 008712 398 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAW 477 (557)
Q Consensus 398 ~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~ 477 (557)
++++++++++|||||++|++|+++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+.+.+
T Consensus 404 v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~ 483 (532)
T TIGR02343 404 VRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPH 483 (532)
T ss_pred HHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999987554468
Q ss_pred eeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcC
Q 008712 478 IGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 478 ~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 525 (557)
+|+|+.+|.+.||++.|||||+.||+++|+.|+|+|++|||||++|.+
T Consensus 484 ~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 484 LGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred cCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 999999999999999999999999999999999999999999999964
No 10
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-103 Score=851.31 Aligned_cols=508 Identities=31% Similarity=0.490 Sum_probs=484.2
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecC--CCCEEEeccHHHHhhcccccChHHHHHHHHHHhh
Q 008712 8 LKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~ 85 (557)
++++.+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred hccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCC---CHHHHHHHHHHHhhccc
Q 008712 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN---DRATMLGLVKSCIGTKF 162 (557)
Q Consensus 86 ~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~---~~~~l~~ia~t~l~sK~ 162 (557)
++++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++.. +.+.|.++++|+++||+
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~ 161 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI 161 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999988532 35789999999999999
Q ss_pred ccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEe
Q 008712 163 TSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLD 242 (557)
Q Consensus 163 ~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~ 242 (557)
.+.++++|++++++|+..++. .+|.+ +|++++++|+++++|++++|+++++++.+ .|+++++||+|++++
T Consensus 162 ~~~~~~~l~~l~~~A~~~v~~-------~~~~~-~i~i~ki~G~s~~ds~l~~G~v~~~~~~~--~~~~~~~n~kIli~~ 231 (517)
T cd03336 162 LTQDKEHFAELAVDAVLRLKG-------SGNLD-AIQIIKKLGGSLKDSYLDEGFLLDKKIGV--NQPKRIENAKILIAN 231 (517)
T ss_pred cchhHHHHHHHHHHHHHHhhc-------cCCcc-ceeEEEccCCCccceEEEeeEEEecccCC--CCCCeeccccEEEEe
Confidence 999999999999999999852 23443 59999999999999999999999998765 479999999999999
Q ss_pred cCCccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHH
Q 008712 243 SPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNN 321 (557)
Q Consensus 243 ~~Le~~k~~~-~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~ 321 (557)
++|++++++. +.++.+++.+++..+...|+++++++++.|++.|++++++++.|++.+++||.++||++++++++.+|+
T Consensus 232 ~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~ 311 (517)
T cd03336 232 TPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVE 311 (517)
T ss_pred cCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHH
Confidence 9999999886 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHH
Q 008712 322 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNI 401 (557)
Q Consensus 322 ~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~ 401 (557)
||+++|||+++++++++++.++|+ |+.|++..+|+++|++|++|+++++|||+|||+|+.+++|.||+++||+++++++
T Consensus 312 rIa~~tGa~ii~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~ 390 (517)
T cd03336 312 RLALVTGGEIASTFDHPELVKLGT-CKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQT 390 (517)
T ss_pred HHHHHhCCEEecccCCCCcccccc-cceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999998999999999999999999999999999999999
Q ss_pred HhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEe
Q 008712 402 IKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGID 481 (557)
Q Consensus 402 ~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid 481 (557)
+++|++|||||++|++|+..|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|||
T Consensus 391 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid 469 (517)
T cd03336 391 VKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGN-TTAGLD 469 (517)
T ss_pred HhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-Cceeee
Confidence 9999999999999999999999998888899999999999999999999999999999999999999998775 789999
Q ss_pred CCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCc
Q 008712 482 GNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 482 ~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~ 527 (557)
+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|
T Consensus 470 ~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 470 MRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred cCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 9999999999999999999999999999999999999999998865
No 11
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-103 Score=853.37 Aligned_cols=512 Identities=35% Similarity=0.631 Sum_probs=488.4
Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhh
Q 008712 6 LVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~ 85 (557)
.+++++...++|.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 3 ILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 35678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCC----CHHHHHHHHHHHhhcc
Q 008712 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN----DRATMLGLVKSCIGTK 161 (557)
Q Consensus 86 ~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~----~~~~l~~ia~t~l~sK 161 (557)
++++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++.. +.+.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK 162 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999988653 3677999999999999
Q ss_pred cccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC--CCccccCCceEE
Q 008712 162 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPRII 239 (557)
Q Consensus 162 ~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~--~~~~~~~n~kIl 239 (557)
+.+.+.++|++++++|+..+++ .+|. ++|+|+++.|++.++|++++|++|++++.++. +|+++++||+|+
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~-------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIl 234 (522)
T cd03340 163 LIASEKEFFAKMVVDAVLSLDD-------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKIL 234 (522)
T ss_pred cchhHHHHHHHHHHHHHHHhcc-------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEE
Confidence 9999999999999999999964 1333 26999999999999999999999999998762 468999999999
Q ss_pred EEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhH
Q 008712 240 LLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 240 l~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~ 319 (557)
+++++|++++++.+.++.+.++++++.+.+.|+++++++++.+.+.|+++|+++++|++.+++||.++||++++++++++
T Consensus 235 l~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~ 314 (522)
T cd03340 235 LLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEED 314 (522)
T ss_pred EEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHH
Q 008712 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 399 (557)
Q Consensus 320 l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~ 399 (557)
|+|||++|||++++++++++++++|+ |+.|++.++|+++|++|++|..++.+||+|||+++..++|+||+++||+++++
T Consensus 315 l~rIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~ 393 (522)
T cd03340 315 LKRVAQATGGSIQTTVSNITDDVLGT-CGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVR 393 (522)
T ss_pred HHHHHHHHCCEEeeccccCCcccccc-ceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999989999999999999999999999999999999
Q ss_pred HHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceee
Q 008712 400 NIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIG 479 (557)
Q Consensus 400 ~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~G 479 (557)
+++++|++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++..++|
T Consensus 394 ~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~G 473 (522)
T cd03340 394 RAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYG 473 (522)
T ss_pred HHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeee
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999876425899
Q ss_pred EeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCC
Q 008712 480 IDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGI 526 (557)
Q Consensus 480 id~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~ 526 (557)
||+.+|++.||++.|||||+.||+++++.|+|+|++|||||++|...
T Consensus 474 id~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 474 VDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred eeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 99999999999999999999999999999999999999999999764
No 12
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-103 Score=851.48 Aligned_cols=514 Identities=32% Similarity=0.511 Sum_probs=486.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCC
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (557)
+..+|.+++..|++||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhh-cccccCCCCHHHHHHHHHHHhhcccccchhHHHH
Q 008712 93 TTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIA 171 (557)
Q Consensus 93 ttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls 171 (557)
|||+++|+++||+++.+++++|+||..|++||+.|++.++++|++ ++++++..+.+.+.++|+|+++||+.+.++++|+
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 165 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFS 165 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999987 4888876568889999999999999998999999
Q ss_pred HHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCcccccc
Q 008712 172 DLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (557)
Q Consensus 172 ~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~ 251 (557)
+++++|+..++.+..+|...+|++ +|+++++.|++.++|++++|++|++++.++ +|+++++||+|++++++|++.+++
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~-~m~~~~~n~kIli~~~~L~~~~~~ 243 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPIK-AVNILKAHGGSARESYLVKGYALNCTRASQ-QMPKRIKKAKIACLDFNLQKQKMA 243 (536)
T ss_pred HHHHHHHHHHhcccccCccccchH-HeEEEEecCCCccccEEEEEEEEecccCCC-CCcceecCCcEEEEecCCCCCccc
Confidence 999999999863222444456765 699999999999999999999999999998 899999999999999999999999
Q ss_pred ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCee
Q 008712 252 NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVI 331 (557)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~~i 331 (557)
.+.++.+++.++++.+.+.|+++++++++.|.+.+++||+++++|++.+++||.+++|++++++++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~i 323 (536)
T TIGR02340 244 LGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTL 323 (536)
T ss_pred CceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC------CCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008712 332 VNRPDEL------QESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 332 i~~~~~l------~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g 405 (557)
++++.++ ++.++|+ |+.|+++++|+++|++|++|..+++|||+|||+|+.+++|++|+++||++++|+++++|
T Consensus 324 i~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 402 (536)
T TIGR02340 324 VSTLADLEGEETFDASYLGF-ADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRTLESN 402 (536)
T ss_pred ecchhhcCcccccccccccc-CceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9988654 3456999 99999999999999999999988999999999999999999999999999999999999
Q ss_pred CcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-------Ccee
Q 008712 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGE-------NAWI 478 (557)
Q Consensus 406 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-------~~~~ 478 (557)
++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ +.++
T Consensus 403 ~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~ 482 (536)
T TIGR02340 403 SVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWY 482 (536)
T ss_pred CEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceE
Confidence 999999999999999999888878889999999999999999999999999999999999999887652 3579
Q ss_pred eEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCccC
Q 008712 479 GIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 479 Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~ 529 (557)
|||+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|++
T Consensus 483 Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 483 GLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred eEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 999999999999999999999999999999999999999999999887643
No 13
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.1e-103 Score=846.38 Aligned_cols=507 Identities=35% Similarity=0.571 Sum_probs=484.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCCh
Q 008712 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (557)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (557)
...+.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHHHHHH
Q 008712 94 TSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADL 173 (557)
Q Consensus 94 tt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~l 173 (557)
||+++|+++||+++.+++++|+||..|++||++|++.++++|+++++|++..+.+.|.++++|++++|+.+.+.++|+++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987667889999999999999999999999999
Q ss_pred HHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCcccccccc
Q 008712 174 AIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253 (557)
Q Consensus 174 i~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~~~ 253 (557)
+++|+..++.+..+ ..+|++ +|+|.++.|++.++|++++|++|++++.++.+||+.++||+|++++++|++++++..
T Consensus 164 ~~~a~~~v~~~~~~--~~~~~~-~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~ 240 (517)
T TIGR02342 164 AVDAVLKVIDPEND--KNVDLN-DIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDME 240 (517)
T ss_pred HHHHHHHHhccccC--CccCHH-HeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccccc
Confidence 99999999752112 256664 699999999999999999999999999984489999999999999999999999999
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCC-----CHHHHHHHHHcCCeEEecCChhHHHHHHHHhC
Q 008712 254 TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKACG 328 (557)
Q Consensus 254 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i-----~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG 328 (557)
.++.+.++++++.++++|+++++++++++++.|++||+++++| ++.+++||.++||++++++++++|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG 320 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG 320 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 008712 329 AVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKL 407 (557)
Q Consensus 329 ~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~v 407 (557)
|+++++++++++.++|+ |+.|++.++|+++|+++++|+. ++++||+|||+|+.+++|+||+++||+++++++++++++
T Consensus 321 a~ii~~~~~l~~~~LG~-~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~ 399 (517)
T TIGR02342 321 CKPIASIDHFTADKLGS-AELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGL 399 (517)
T ss_pred CEEEcchhhcCcccCcC-CceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999 9999999999999999999987 489999999999999999999999999999999999899
Q ss_pred ccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCcc
Q 008712 408 VPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAI 487 (557)
Q Consensus 408 vpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i 487 (557)
|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|+|+.+|++
T Consensus 400 VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~i 478 (517)
T TIGR02342 400 IPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGE-KYAGISVRKGGI 478 (517)
T ss_pred EECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CccceecCCCCc
Confidence 9999999999999999998888899999999999999999999999999999999999999998775 689999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcC
Q 008712 488 SDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 488 ~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 525 (557)
.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 479 ~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 479 TDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred cchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 99999999999999999999999999999999999875
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-102 Score=845.82 Aligned_cols=514 Identities=36% Similarity=0.640 Sum_probs=488.9
Q ss_pred CCcccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHH
Q 008712 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELS 82 (557)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~ 82 (557)
+|..+++++....+|.+++..|+.||.+++++|++||||+||+|||+++.| ++|||||+||+++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 2 PTIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred CccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 455567888889999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCC---CCHHHHHHHHHHHhh
Q 008712 83 RTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT---NDRATMLGLVKSCIG 159 (557)
Q Consensus 83 ~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~---~~~~~l~~ia~t~l~ 159 (557)
++|++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++. .+.+.|.++|+|+++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~ 160 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALN 160 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999863 245789999999999
Q ss_pred cccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC--CCccccCCce
Q 008712 160 TKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG--KMRRKIVNPR 237 (557)
Q Consensus 160 sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~--~~~~~~~n~k 237 (557)
||+.+.++++|++++++|+.+++++ .+|++ +|+|+++.|+++++|++++|++|++++.+|. +|+++++||+
T Consensus 161 sK~~~~~~~~l~~l~~~A~~~v~~~------~~~~~-~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~k 233 (522)
T TIGR02345 161 SKLIAHEKEFFSKMIVDAVLQLDID------DLDLK-LIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPK 233 (522)
T ss_pred cccccchHHHHHHHHHHHHHHHhhc------cCChh-HheEEeecCCCHHhcceecceEEecccCccccccCCceeccce
Confidence 9999999999999999999999741 34544 5999999999999999999999999998762 5689999999
Q ss_pred EEEEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCCh
Q 008712 238 IILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 317 (557)
Q Consensus 238 Ill~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~ 317 (557)
|++++++|++.+.+.+..+.+.+.+++..+.+.|+++++++++.+.+.|+++|+++++|++.+++||.+++|++++++++
T Consensus 234 Ill~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~ 313 (522)
T TIGR02345 234 ILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSD 313 (522)
T ss_pred EEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHH
Q 008712 318 TDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (557)
Q Consensus 318 ~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~ 397 (557)
+++++++++||+++++++++++++++|+ |+.++++++++++|.+|+||+++++|||+|||+|+.+++|++|+++||+++
T Consensus 314 ~dl~ria~~tga~ii~~~~~l~~~~LG~-~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~ 392 (522)
T TIGR02345 314 EDLKRVVKACGGSIQSTTSDLEADVLGT-CALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMI 392 (522)
T ss_pred HHHHHHHHHhCCeEEcchhhCChhhccC-CceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCce
Q 008712 398 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAW 477 (557)
Q Consensus 398 ~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~ 477 (557)
+|++++++++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ .+
T Consensus 393 ~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~-~~ 471 (522)
T TIGR02345 393 VRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGG-KW 471 (522)
T ss_pred HHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-Cc
Confidence 99999998899999999999999999988888899999999999999999999999999999999999999987764 68
Q ss_pred eeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCC
Q 008712 478 IGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGI 526 (557)
Q Consensus 478 ~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~ 526 (557)
+|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|..+
T Consensus 472 ~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 472 YGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred cceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999763
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-102 Score=843.69 Aligned_cols=506 Identities=37% Similarity=0.587 Sum_probs=484.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCC
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (557)
++..+.+++.+|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHHHHH
Q 008712 93 TTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIAD 172 (557)
Q Consensus 93 ttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~ 172 (557)
|||+++|+++|++++.+++++|+||..|++||++|++.++++|++++++++..+.+.|.++|+|+++||+.+.+++++++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~ 161 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAP 161 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999766788999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCc-cccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCcccccc
Q 008712 173 LAIDATTTVGVDLGQGL-REVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGE 251 (557)
Q Consensus 173 li~~a~~~v~~~~~~g~-~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~ 251 (557)
++++|+.+++.+ +. ..+|++ +|.|.+..|+++++|++++|++|++++.++..||+.++||++++++|+|++++++
T Consensus 162 li~~A~~~v~~~---~~~~~~d~~-~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~ 237 (515)
T cd03338 162 IAVDAVLKVIDP---ATATNVDLK-DIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTD 237 (515)
T ss_pred HHHHHHHHhhcc---cccCcCCHH-HeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccc
Confidence 999999999853 22 357765 6999999999999999999999999999873359999999999999999999999
Q ss_pred ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCC-----CHHHHHHHHHcCCeEEecCChhHHHHHHHH
Q 008712 252 NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKA 326 (557)
Q Consensus 252 ~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i-----~~~al~~L~~~~I~~i~~v~~~~l~~i~~~ 326 (557)
...++.+++.++++.++++|+++++++++.+++.|++||+++++| ++.+++||.++||++++++++++|+|||++
T Consensus 238 ~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~ 317 (515)
T cd03338 238 MDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKT 317 (515)
T ss_pred cCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred hCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008712 327 CGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 327 tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g 405 (557)
||++++++++++++.++|+ |+.|++.++|+++|.++++|++ +++|||+|||+|+.+++|+||+++||++++++++++|
T Consensus 318 tGa~ii~sl~~l~~~~LG~-~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~ 396 (515)
T cd03338 318 IGCKPVASIDHFTEDKLGS-ADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKR 396 (515)
T ss_pred HCCEEecccccCCHhhCCC-CceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999 9999999999999999999987 6899999999999999999999999999999999999
Q ss_pred CcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCC
Q 008712 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTG 485 (557)
Q Consensus 406 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~ 485 (557)
++|||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++|||+.+|
T Consensus 397 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~G~d~~~g 475 (515)
T cd03338 397 ALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGE-KNAGINVRKG 475 (515)
T ss_pred CEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-CccceeccCC
Confidence 999999999999999999988888889999999999999999999999999999999999999998764 6899999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhc
Q 008712 486 AISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 486 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 524 (557)
++.||++.|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~ 514 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVL 514 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 999999999999999999999999999999999999986
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.2e-102 Score=837.22 Aligned_cols=510 Identities=31% Similarity=0.502 Sum_probs=484.5
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCC--CCEEEeccHHHHhhcccccChHHHHHHHHHHh
Q 008712 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRT 84 (557)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~ 84 (557)
+++++.+..+|.+++.+|+.|+.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3567778899999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCC---CHHHHHHHHHHHhhcc
Q 008712 85 QDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTN---DRATMLGLVKSCIGTK 161 (557)
Q Consensus 85 ~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~---~~~~l~~ia~t~l~sK 161 (557)
|++++||||||+|+|+++||+++.+++++|+||..|++||+.|++.++++|++++++++.. +.+.|.++++|++++|
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~sk 161 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSK 161 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999998542 3578999999999999
Q ss_pred cccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEE
Q 008712 162 FTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILL 241 (557)
Q Consensus 162 ~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~ 241 (557)
+.+.+.+.|++++++|+..+.. + .|.+ +|++.+++|+++++|++++|+++++.+.+ .|+++++||+|+++
T Consensus 162 i~~~~~~~~s~l~~~av~~i~~----~---~~~~-~i~i~k~~G~s~~~s~l~~G~v~~~~~~~--~~~~~~~n~~Ili~ 231 (519)
T TIGR02341 162 ILSQHKDHFAQLAVDAVLRLKG----S---GNLD-AIQIIKKLGGSLNDSYLDEGFLLEKKIGV--NQPKRIENAKILIA 231 (519)
T ss_pred hhhhHHHHHHHHHHHHHHHhcc----C---CChh-heEEEEccCCCcccceEEeeEEEeccCCC--CCceeeccccEEEE
Confidence 9999999999999999998842 1 2333 49999999999999999999999998765 57999999999999
Q ss_pred ecCCccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHH
Q 008712 242 DSPLEYKKGEN-QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDN 320 (557)
Q Consensus 242 ~~~Le~~k~~~-~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l 320 (557)
+++|++.+++. ++++.+++.+++..+...|+++++++++.|++.|++++++++.|++.+++||.+++|++++++++.+|
T Consensus 232 ~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l 311 (519)
T TIGR02341 232 NTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGI 311 (519)
T ss_pred ecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHH
Confidence 99999999886 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHH
Q 008712 321 NRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN 400 (557)
Q Consensus 321 ~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~ 400 (557)
+||+++|||++++++++++++++|+ |+.|++..+|+++|.+|++|+.++.|||+|||+|+.+++|+||+++||++++++
T Consensus 312 ~~ia~~tGa~ii~~~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~ 390 (519)
T TIGR02341 312 ERLALVTGGEIVSTFDHPELVKLGS-CDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQ 390 (519)
T ss_pred HHHHHHhCCEEecccccCCcccccc-CceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeE
Q 008712 401 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGI 480 (557)
Q Consensus 401 ~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gi 480 (557)
+++++++||||||+|++|+..|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+. .++||
T Consensus 391 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gi 469 (519)
T TIGR02341 391 TVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGN-HTMGL 469 (519)
T ss_pred HHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-Cccce
Confidence 99999999999999999999999988888899999999999999999999999999999999999999998775 68999
Q ss_pred eCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCcc
Q 008712 481 DGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 481 d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 528 (557)
|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|+
T Consensus 470 d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 470 DMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred ecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999998773
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-101 Score=837.98 Aligned_cols=512 Identities=32% Similarity=0.533 Sum_probs=482.7
Q ss_pred cccccccccccH-HHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhh
Q 008712 7 VLKDSLKRESGT-KVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQ 85 (557)
Q Consensus 7 ~~~~~~~~~~g~-~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~ 85 (557)
+++++...++|. +++.+|+.||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 456665677776 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhccc-cc-CCCCHHHHHHHHHHHhhcccc
Q 008712 86 DEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAM-PI-DTNDRATMLGLVKSCIGTKFT 163 (557)
Q Consensus 86 ~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~-~v-~~~~~~~l~~ia~t~l~sK~~ 163 (557)
++++||||||+|||+++||+++.+++++|+||..|++||+.|++.++++|+++++ ++ +..+.+.+.++++|+++||+.
T Consensus 85 d~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~ 164 (531)
T TIGR02346 85 ENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQY 164 (531)
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999999999999999999886 66 334678899999999999998
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEec
Q 008712 164 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243 (557)
Q Consensus 164 ~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~ 243 (557)
+. +++|++++++|+.+++++ +...+|++ .|+|+++.|++.++|++++|++|++++. .|+++++||||+++++
T Consensus 165 ~~-~~~ls~l~~~Ai~~v~~~---~~~~~~~~-~I~i~ki~G~s~~ds~li~Gi~~~~~~~---~~~k~i~n~kI~l~~~ 236 (531)
T TIGR02346 165 GN-EDFLAQLVAKACSTVMPK---NPENFNVD-NIRVSKIMGGSISNSEVLKGMVFNREAE---GSVKRVKNAKVAVFSC 236 (531)
T ss_pred ch-HHHHHHHHHHHHHHHhhc---CCCcCChh-HeeEEEecCCChhhceeEeeeEEeccCC---CCceeccCCCEEEEec
Confidence 76 999999999999999852 32356765 5999999999999999999999999853 4689999999999999
Q ss_pred CCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHH
Q 008712 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRI 323 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i 323 (557)
++++.+++.+.++.+++++++..+...|+++++++++.+++.|++||+++++|++.+++||.++||+++++++..+|+||
T Consensus 237 ~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~I 316 (531)
T TIGR02346 237 PLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRL 316 (531)
T ss_pred CcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecC-CCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHH
Q 008712 324 AKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCK-DPKACTVLLRGASKDLLNEVERNLQDAMSVARNII 402 (557)
Q Consensus 324 ~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~-~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~ 402 (557)
+.+||+++++++++++++++|+ |+.|++.++|+++|.+|++|. .++++||+|||+|+.+++|+||+++||++++|+++
T Consensus 317 a~~tGa~ii~~l~~~~~~~LG~-a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai 395 (531)
T TIGR02346 317 CKTVGATPLARLGAPQPEEIGY-VDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALV 395 (531)
T ss_pred HHHHCCEEecccccCCHhHccc-cceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 999999999999999999987 58899999999999999999999999999999999
Q ss_pred hCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeC
Q 008712 403 KNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDG 482 (557)
Q Consensus 403 ~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~ 482 (557)
++|++||||||+|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|..++ .++|||+
T Consensus 396 ~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~Gid~ 474 (531)
T TIGR02346 396 KDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGN-TSSGIDI 474 (531)
T ss_pred cCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-Cccceee
Confidence 999999999999999999999988888889999999999999999999999999999999999999997664 6899999
Q ss_pred CCCc--cccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCcc
Q 008712 483 NTGA--ISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 483 ~~~~--i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 528 (557)
.+|. +.||++.|||||+.||+++|+.|+|+|++|||||++|...|.
T Consensus 475 ~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 522 (531)
T TIGR02346 475 EAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPA 522 (531)
T ss_pred eCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCC
Confidence 9999 599999999999999999999999999999999999988653
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.7e-100 Score=819.14 Aligned_cols=480 Identities=31% Similarity=0.561 Sum_probs=456.3
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccc
Q 008712 10 DSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEV 89 (557)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~ 89 (557)
++....+|.+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+.++|++|++++
T Consensus 3 ~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~ 82 (484)
T cd03342 3 PKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDIT 82 (484)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCC-CCHHHHHHHHHHHhhcccccchhH
Q 008712 90 GDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT-NDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 90 GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~-~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
||||||+++|+++|++++.+++++|+||..|++||++|++.++++|++++.+++. .+.+.+.++|+|++++|+.+.+.+
T Consensus 83 GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~ 162 (484)
T cd03342 83 GDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLAD 162 (484)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999864 468899999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCccc
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYK 248 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 248 (557)
+|++++++|+..+++ ++ ..+|++ +|+|+++.|++.++|++++|++|++++.++ .|+++++||+|++++++|+++
T Consensus 163 ~l~~l~~~A~~~v~~---~~-~~~~~~-~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~-~m~~~~~n~~Ill~~~~le~~ 236 (484)
T cd03342 163 QLTEIVVDAVLAIYK---PD-EPIDLH-MVEIMQMQHKSDSDTKLIRGLVLDHGARHP-DMPKRVENAYILTCNVSLEYE 236 (484)
T ss_pred HHHHHHHHHHHHHhh---cC-CccChh-HeEEEEecCCChhhceEEeeEEEecCCCCC-CCCccccCceEEEEeCCCCCC
Confidence 999999999999985 22 256765 599999999999999999999999999998 899999999999999999998
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhC
Q 008712 249 KGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACG 328 (557)
Q Consensus 249 k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG 328 (557)
+++.+.++.+. ||+++++|++.++++|.++||++++++++++|+||+++||
T Consensus 237 ~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 237 KTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred ccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 88776655432 9999999999999999999999999999999999999999
Q ss_pred CeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 008712 329 AVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLV 408 (557)
Q Consensus 329 ~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vv 408 (557)
|+++++++++++.++|+ |+.++++.+|+++|+++++|+.++.+||+|||+|+.+++|+||+++||++++++++++|++|
T Consensus 288 a~ii~~l~~~~~~~LG~-~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 288 GVAMNSVDDLSPECLGY-AGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CEEecccccCChhhCcc-cceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccc
Q 008712 409 PGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAIS 488 (557)
Q Consensus 409 pGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~ 488 (557)
||||++|++|+.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+. .++|||+.+|++.
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~-~~~Gid~~~g~~~ 445 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGG-QVGGVDLDTGEPM 445 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccC-CceeeeCCCCccc
Confidence 999999999999999998888899999999999999999999999999999999999998887765 6799999999999
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCC
Q 008712 489 DMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGI 526 (557)
Q Consensus 489 d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~ 526 (557)
||++.|||||+.||+++|+.|+|+|++|||||++|+..
T Consensus 446 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 446 DPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred chhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999999999999999753
No 19
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-100 Score=818.15 Aligned_cols=475 Identities=74% Similarity=1.139 Sum_probs=452.7
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhh
Q 008712 7 VLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86 (557)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~ 86 (557)
+++++.+..+|.+++..|+.||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 45777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccch
Q 008712 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166 (557)
Q Consensus 87 ~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~ 166 (557)
+++||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++..+.+.|.++++|+++||+.+.|
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~ 163 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRW 163 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999877788999999999999999999
Q ss_pred hHHHHHHHHHHHhhcccccCCCc-cccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCC
Q 008712 167 GDLIADLAIDATTTVGVDLGQGL-REVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPL 245 (557)
Q Consensus 167 ~~~ls~li~~a~~~v~~~~~~g~-~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~L 245 (557)
.+.+++++++|+..++++. .+. .++|++++|+|++++|++.++|++++|++|++++.++ +|+++++||+|++++++|
T Consensus 164 ~~~ls~lv~~Ai~~v~~~~-~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~-~m~~~~~n~kIlll~~~L 241 (480)
T cd03337 164 SDLMCNLALDAVKTVAVEE-NGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP-KMRRRIENPRIVLLDCPL 241 (480)
T ss_pred HHHHHHHHHHHHHhhcccc-CCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCC-CCCcEecCCCEEEEecCc
Confidence 9999999999999998632 122 2577777799999999999999999999999999998 899999999999999998
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHH
Q 008712 246 EYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAK 325 (557)
Q Consensus 246 e~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~ 325 (557)
++ ||+++++|++.+++||.++||++++++++++|+||++
T Consensus 242 e~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~ 280 (480)
T cd03337 242 EY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIAR 280 (480)
T ss_pred ce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHH
Confidence 75 9999999999999999999999999999999999999
Q ss_pred HhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008712 326 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 326 ~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g 405 (557)
+|||++++++++++++++|++|+.++++++++++|++|++|++++.|||+|||+|+.+++|.||+++||+++++++++++
T Consensus 281 ~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~ 360 (480)
T cd03337 281 ACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNP 360 (480)
T ss_pred HHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999677888888999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCC
Q 008712 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTG 485 (557)
Q Consensus 406 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~ 485 (557)
++|||||++|++|+.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|++.|.++++.++|+|+.+|
T Consensus 361 ~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 440 (480)
T cd03337 361 KLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETG 440 (480)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCC
Confidence 99999999999999999998888889999999999999999999999999999999999999999877446899999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhc
Q 008712 486 AISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 486 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 524 (557)
++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 441 ~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 441 DIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred CcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 999999999999999999999999999999999999984
No 20
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-99 Score=730.74 Aligned_cols=507 Identities=35% Similarity=0.578 Sum_probs=485.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCC
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDG 92 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDG 92 (557)
+.++.+++|.+||+|++++++.++|||||+||+|||++..|+++|||||+|||+.|.+-||+++||++.+..||.++|||
T Consensus 20 d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDG 99 (534)
T KOG0358|consen 20 DKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDG 99 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCC
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHHHHH
Q 008712 93 TTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIAD 172 (557)
Q Consensus 93 ttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~ 172 (557)
|||+|+|+++||+.+.+|+++|+||..|...|+.|.+..+++|.+++.|++.+|++.|.+-+.|+|+||+.++++..++.
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llap 179 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAP 179 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCccccccc
Q 008712 173 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252 (557)
Q Consensus 173 li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~~ 252 (557)
++++|+.++..+ ....++|++ +|+|.+..||.++|+++++|++|++..... ..|++++++||-++.|.|..+|++.
T Consensus 180 mAVdAV~kv~dp--~~~~nvdlk-dIkivkklGgtvdDte~i~glvl~~~~~~~-~gptriekAkIglIQF~iS~PKtdm 255 (534)
T KOG0358|consen 180 MAVDAVLKVIDP--ENATNVDLK-DIKIVKKLGGTVDDTELIKGLVLTQKASKS-AGPTRIEKAKIGLIQFQISPPKTDM 255 (534)
T ss_pred HHHHHHHhccCc--ccccccchh-hhhhHHhhCCccchhhhhcceEEeeecccC-CCcchhhhceeeEEEEEecCCCCCc
Confidence 999999998632 233567776 599999999999999999999999887766 4799999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCC-----CHHHHHHHHHcCCeEEecCChhHHHHHHHHh
Q 008712 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGL-----SDLACHYLSKAGVSAIRRLRKTDNNRIAKAC 327 (557)
Q Consensus 253 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i-----~~~al~~L~~~~I~~i~~v~~~~l~~i~~~t 327 (557)
..++.++++.+++.+++.|++|+.+++++|++.|+||+++|++| +|.+++||.+.+|+|++++.+++++.+|+..
T Consensus 256 en~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l 335 (534)
T KOG0358|consen 256 ENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTL 335 (534)
T ss_pred ccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred CCeeccCCCCCCCCCcCCccceEEEEE-ECCeEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 008712 328 GAVIVNRPDELQESDVGTGAGLFEVKK-IGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNP 405 (557)
Q Consensus 328 G~~ii~~~~~l~~~~lG~~~~~v~~~~-ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g 405 (557)
|+.++.+++.+++..||+ ++.+++.. -|+-++..+.|+.+ ++++||++||++...++|.+|++|||||++|+.++.+
T Consensus 336 ~c~Pia~id~f~~d~Lg~-adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r 414 (534)
T KOG0358|consen 336 GCKPIADIDHFTADKLGS-ADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKR 414 (534)
T ss_pred CCeecchhhhcChhhcCc-chhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhcc
Confidence 999999999999999999 99999884 45569999999876 7899999999999999999999999999999999999
Q ss_pred CcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCC
Q 008712 406 KLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTG 485 (557)
Q Consensus 406 ~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~ 485 (557)
.++||||+.|+.++..|.+++.+..+.+.+++++||+|||.||.+|++|||++|..++.+||+.|.+|+ .+.||+++.|
T Consensus 415 ~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge-~~aGInVRkg 493 (534)
T KOG0358|consen 415 ALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGE-KNAGINVRKG 493 (534)
T ss_pred ceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCC-cccceeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcC
Q 008712 486 AISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 486 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 525 (557)
.+.||.+..|+.|+.|-.++++.|+|++.+||+||+|+..
T Consensus 494 ~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 494 GITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred cchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999999999999999999999999854
No 21
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-97 Score=712.29 Aligned_cols=519 Identities=31% Similarity=0.504 Sum_probs=492.0
Q ss_pred CCcccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecC--CCCEEEeccHHHHhhcccccChHHHHHHH
Q 008712 3 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDA--SGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTnDG~tIlk~l~~~hP~a~ll~~ 80 (557)
.|..+++++.++++|+.+|.+.|.++..+.++|||||||+||+|+++.. .|.+.+||||+|||+++.+.+|.||+|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 4678899999999999999999999999999999999999999999974 45799999999999999999999999999
Q ss_pred HHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCC---CCHHHHHHHHHHH
Q 008712 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDT---NDRATMLGLVKSC 157 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~---~~~~~l~~ia~t~ 157 (557)
++..||.++||||||+++|+++||+++.+|+.+.+||+.|++||+.|.+.+.+.|.+.++.... .-+++|.++++|.
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTT 161 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTT 161 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887775432 1267899999999
Q ss_pred hhcccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCce
Q 008712 158 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPR 237 (557)
Q Consensus 158 l~sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~k 237 (557)
|+||+.++..++|++++++|+.++. |..+++ .|+|+|..||++.||++-+|+++++.+-. +.|++++|++
T Consensus 162 L~SKiLsq~kehFaelavdAV~rLk-----Gs~nL~---~IqIIK~~Gg~l~dSfLDeGFlL~K~igv--~qpkriena~ 231 (527)
T KOG0363|consen 162 LSSKILSQDKEHFAELAVDAVLRLK-----GSTNLE---AIQIIKKLGGKLEDSFLDEGFLLDKKIGV--NQPKRIENAK 231 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc-----CCCCcc---ceeeehhcCCccccccccccceeccccCC--CCcccccccc
Confidence 9999999999999999999999985 444454 49999999999999999999999998765 6799999999
Q ss_pred EEEEecCCcccccc-ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 008712 238 IILLDSPLEYKKGE-NQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (557)
Q Consensus 238 Ill~~~~Le~~k~~-~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~ 316 (557)
||+-|.+++..|-+ +.+.+.+.+...+.++...|++.++.++++|.++|+|+.+...-|.++-.++|...||+++...+
T Consensus 232 iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHAD 311 (527)
T KOG0363|consen 232 ILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHAD 311 (527)
T ss_pred eEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeeccc
Confidence 99999999987765 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHH
Q 008712 317 KTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMS 396 (557)
Q Consensus 317 ~~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~ 396 (557)
.+-+||++.+||+.|+++++.++...+|+ |+.+++..+|++++++|+||+.+..|||+|||+|++.+||.+|++|||||
T Consensus 312 FdGiERLalvtGGeI~STFd~p~~~klG~-C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALc 390 (527)
T KOG0363|consen 312 FDGIERLALVTGGEIVSTFDNPELVKLGE-CDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALC 390 (527)
T ss_pred chhHHHHhhcccceeeeccCCcchhcccc-chhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 008712 397 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENA 476 (557)
Q Consensus 397 ~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 476 (557)
++...+++.+++.||||.||..+..+.+++...++++..++++|++||..+|.+|+.|+|+|+.+++++||+.|.+|. .
T Consensus 391 VLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~-~ 469 (527)
T KOG0363|consen 391 VLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGR-T 469 (527)
T ss_pred HHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred eeeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCccCCCCC
Q 008712 477 WIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPG 533 (557)
Q Consensus 477 ~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~~~~ 533 (557)
.+|+|+.+|.+.||.+.||+|++.+|...+.+|.|+|.+|||+|.||.+.|.+..|.
T Consensus 470 t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~~ 526 (527)
T KOG0363|consen 470 TMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERERD 526 (527)
T ss_pred ccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcccccC
Confidence 999999999999999999999999999999999999999999999999998876554
No 22
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4e-95 Score=777.58 Aligned_cols=463 Identities=33% Similarity=0.556 Sum_probs=436.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCChh
Q 008712 15 ESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTT 94 (557)
Q Consensus 15 ~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGtt 94 (557)
..+.+++..|++||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccc-c-CCCCHHHHHHHHHHHhhcccccchhHHHHH
Q 008712 95 SVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMP-I-DTNDRATMLGLVKSCIGTKFTSQFGDLIAD 172 (557)
Q Consensus 95 t~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~-v-~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~ 172 (557)
|+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++ + +..+.+.+.++++|+++||+.+ +.++|++
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~ 162 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSP 162 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHH
Confidence 99999999999999999999999999999999999999999998876 4 3346788999999999999876 7899999
Q ss_pred HHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCccccccc
Q 008712 173 LAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGEN 252 (557)
Q Consensus 173 li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~~ 252 (557)
++++|+.+++++. .| .+|++ +|+|++++|++.+||++++|++|++.+. .++++++||+|++++++|++
T Consensus 163 l~~~a~~~~~~~~-~~--~~~~~-~i~i~ki~Gg~~~ds~lv~Giv~~~~~~---~~~~~~~n~~Ili~~~~Le~----- 230 (472)
T cd03341 163 LVAEACISVLPEN-IG--NFNVD-NIRVVKILGGSLEDSKVVRGMVFKREPE---GSVKRVKKAKVAVFSCPFDI----- 230 (472)
T ss_pred HHHHHHHHHhhcc-CC--cCChh-HeEEEEecCCCcccceEEeeEEEccccC---CCceeccCCcEEEEeccccC-----
Confidence 9999999998531 12 46665 5999999999999999999999987654 34588999999999999875
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeec
Q 008712 253 QTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIV 332 (557)
Q Consensus 253 ~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~~ii 332 (557)
|++||+++++|++.+++||.++||++++++++.+|+||+++||++++
T Consensus 231 ---------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii 277 (472)
T cd03341 231 ---------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPL 277 (472)
T ss_pred ---------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCC-CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Q 008712 333 NRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD-PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGG 411 (557)
Q Consensus 333 ~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~-~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGG 411 (557)
+++++++++++|+ |+.|++.++|+++|++|++|.. ++++||+|||+|+.+++|+||+++||++++++++++|++||||
T Consensus 278 ~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGG 356 (472)
T cd03341 278 PRLGAPTPEEIGY-CDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGA 356 (472)
T ss_pred cccccCCHhHCCC-ceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCc
Confidence 9999999999999 9999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCC--cccc
Q 008712 412 GATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTG--AISD 489 (557)
Q Consensus 412 G~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~--~i~d 489 (557)
|++|++++.+|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+++ .++|||+.+| ++.|
T Consensus 357 G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~-~~~Gid~~~g~~~~~d 435 (472)
T cd03341 357 GATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGN-KSAGVDIESGDEGTKD 435 (472)
T ss_pred CHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccC-CeeeeeccCCCCCccC
Confidence 999999999999988778889999999999999999999999999999999999999897765 6899999999 9999
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcC
Q 008712 490 MKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 490 ~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 525 (557)
|++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 436 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 436 AKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred hhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 999999999999999999999999999999999864
No 23
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.1e-95 Score=777.38 Aligned_cols=462 Identities=48% Similarity=0.761 Sum_probs=442.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCCh
Q 008712 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGT 93 (557)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGt 93 (557)
..++.+++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHHHHHH
Q 008712 94 TSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADL 173 (557)
Q Consensus 94 tt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~l 173 (557)
||+++|+++|++++.+++++|+||..|++||+.|++.++++|++++++++..+.+.+.++++|+++||+.+.|+++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l 162 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGEL 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999976667899999999999999999999999999
Q ss_pred HHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCcccccccc
Q 008712 174 AIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQ 253 (557)
Q Consensus 174 i~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~~~ 253 (557)
+++|+.+++++. . .+|. ++|+|++++|+++.+|++++|++|++++.++ .|+++++||+|++++++|++
T Consensus 163 ~~~Ai~~v~~~~--~--~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~-~m~~~~~n~~Ili~~~~Le~------ 230 (464)
T cd00309 163 VVDAVLKVGKEN--G--DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSP-YMPKRLENAKILLLDCKLEY------ 230 (464)
T ss_pred HHHHHHHhcccc--C--cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCC-CCceeecCceEEEEecCcce------
Confidence 999999998632 1 3444 3699999999999999999999999999998 89999999999999999975
Q ss_pred ceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeecc
Q 008712 254 TNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 333 (557)
Q Consensus 254 ~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~~ii~ 333 (557)
||+++++|++.++++|.++||++++++++++|+||+++||+++++
T Consensus 231 -----------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~ 275 (464)
T cd00309 231 -----------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVS 275 (464)
T ss_pred -----------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEec
Confidence 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Q 008712 334 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGA 413 (557)
Q Consensus 334 ~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~ 413 (557)
+++++++.++|+ |+.+++.++|+++|++|.+|..++.|||+|||+|+.+++|+||+++||+++++++++++++|||||+
T Consensus 276 ~~~~~~~~~lG~-~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 276 RLEDLTPEDLGT-AGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred ccccCCcccCcc-ccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 999999999999 9999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCcccccccc
Q 008712 414 TELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKER 493 (557)
Q Consensus 414 ~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~ 493 (557)
+|++|+++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|..+. .++|+|..+|++.||.+.
T Consensus 355 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~-~~~g~d~~~~~~~d~~~~ 433 (464)
T cd00309 355 AEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGG-GNAGGDVETGEIVDMKEA 433 (464)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccC-CCeeEECCCCcEeehhhc
Confidence 9999999999998888899999999999999999999999999999999999999887664 678999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhHhhc
Q 008712 494 KIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 524 (557)
Q Consensus 494 gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~ 524 (557)
|||||+.||+++|+.|+|+|++|||||++|+
T Consensus 434 gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 434 GIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred cCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 9999999999999999999999999999984
No 24
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-94 Score=768.19 Aligned_cols=507 Identities=37% Similarity=0.574 Sum_probs=473.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhcccc
Q 008712 11 SLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVG 90 (557)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~G 90 (557)
+....+|.++|.+|+.|+..|+++||+||||+||+|||+++.|+++|||||+||+++|+++||+|+|++++|++||+++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 34577899999999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHHH
Q 008712 91 DGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLI 170 (557)
Q Consensus 91 DGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~l 170 (557)
|||||++||+++||+++.+++++|+||..|++||++|.+.++++|++++++++..+.+. +++.|++++|+.+++ +++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i 159 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEEL--KIAITSVASKSANSD-EEI 159 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhh--hhhhheeeeeeccCh-HHH
Confidence 99999999999999999999999999999999999999999999999999998654444 899999999988766 999
Q ss_pred HHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCc-cccCCceEEEEecCCcccc
Q 008712 171 ADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMR-RKIVNPRIILLDSPLEYKK 249 (557)
Q Consensus 171 s~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~-~~~~n~kIll~~~~Le~~k 249 (557)
++++++|+.+++..+ . |++ .|.+.+..|+..+++++++|++|++++..+..|| +.++||+|+++|++|++.+
T Consensus 160 ~~lv~~Av~~v~~~~----~--d~~-~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k 232 (524)
T COG0459 160 GELVVEAVEKVGKEQ----S--DLD-GIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKK 232 (524)
T ss_pred HHHHHHHHHHhcccc----c--ccC-CeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEcccccccc
Confidence 999999999998531 1 333 5888999999999999999999999555544899 8999999999999999999
Q ss_pred ccccceEEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEeCCCCCHHHHHHHHHcCCeEEecCChhHH-HHHHHH
Q 008712 250 GENQTNAELVKEEDWEVLLKMEE-EYIENLCMQILKFKPD-LVITEKGLSDLACHYLSKAGVSAIRRLRKTDN-NRIAKA 326 (557)
Q Consensus 250 ~~~~~~~~i~~~~~l~~~~~~E~-~~i~~~l~~i~~~~~~-lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l-~~i~~~ 326 (557)
++.+.++.++++++|..+.+.|+ +.+..+++++.+.+++ +++++++|+|.+++||.+.+|++++++.++++ ++|+++
T Consensus 233 ~~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~ 312 (524)
T COG0459 233 PELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKL 312 (524)
T ss_pred ccCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHc
Confidence 99999999999999999999999 9999999999999999 99999999999999999999999999999999 899999
Q ss_pred hCCeeccCCCCCCCCCcCC-ccceEEEEEECCeEEEEEEecCC--CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHh
Q 008712 327 CGAVIVNRPDELQESDVGT-GAGLFEVKKIGDEFFAFIVDCKD--PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIK 403 (557)
Q Consensus 327 tG~~ii~~~~~l~~~~lG~-~~~~v~~~~ig~~~~~~l~~~~~--~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~ 403 (557)
+||++++.++++++..+|. .|+.++..+++++++.+|++|+. +++|||+|||+|+.+++|+||+++|||+++|++++
T Consensus 313 ~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave 392 (524)
T COG0459 313 GGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVE 392 (524)
T ss_pred cCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888883 28889999999999999999985 88999999999999999999999999999999999
Q ss_pred CCCcccCCCchHHHHHHHHHhhhccCCC-ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeC
Q 008712 404 NPKLVPGGGATELTVSATLKQKSSSIEG-IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDG 482 (557)
Q Consensus 404 ~g~vvpGGG~~E~~l~~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~ 482 (557)
+|++|||||++|++++..|++++....+ ++|+++++|++||+.||++|++|||+|+.+++.+|++.|. .+++|||+
T Consensus 393 ~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~---~~~~G~d~ 469 (524)
T COG0459 393 EGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA---TTNYGIDA 469 (524)
T ss_pred cCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc---CCccceec
Confidence 9999999999999999999987444444 8999999999999999999999999999999999999874 15699999
Q ss_pred CCCcc-ccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCccCC
Q 008712 483 NTGAI-SDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 530 (557)
Q Consensus 483 ~~~~i-~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~ 530 (557)
.+|++ .||.+.|||||+.||+++|+.|+|+|++|||+|++|...|++.
T Consensus 470 ~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 470 FTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred cCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 99999 7799999999999999999999999999999999999987654
No 25
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-94 Score=710.09 Aligned_cols=524 Identities=70% Similarity=1.069 Sum_probs=509.7
Q ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHH
Q 008712 1 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIE 80 (557)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~ 80 (557)
||+|+..++.+...++|..++..|++|++++++++++||||+.|.||+.++.|.+..||||..|++++++.||.|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 89999888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhc
Q 008712 81 LSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGT 160 (557)
Q Consensus 81 ~~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~s 160 (557)
++.+||+++||||||+++|++++|.++..++++++||..|+++|.+|++.++..++++++++|..+...+.+++.+++.+
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~t 160 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGT 160 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred ccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEE
Q 008712 161 KFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIIL 240 (557)
Q Consensus 161 K~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll 240 (557)
|+.+.|++.++++..+|+.+++.+ +|. ++|+.++.++.|++||.+++|++++|+.+.++..|| .|+..++||+|+|
T Consensus 161 k~~~~~~~~~~~lal~avk~V~~~--~g~-e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hp-kmrr~IenprivL 236 (527)
T KOG0364|consen 161 KFNSRWSDLICNLALDAVKTVGVE--NGR-EIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHP-KMRRAIENPRIVL 236 (527)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhc--cCc-eechhhhccccccCcccccccceecceeeccccCcH-HHHHHhhcCcEEE
Confidence 999999999999999999999864 443 799999999999999999999999999999999999 9999999999999
Q ss_pred EecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHH
Q 008712 241 LDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDN 320 (557)
Q Consensus 241 ~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l 320 (557)
+||+|+|.+.++++++.+...+++..+++-|++++..+++.+....+++|++++++++.+++||.++||.+++++++.|.
T Consensus 237 lD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn 316 (527)
T KOG0364|consen 237 LDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDN 316 (527)
T ss_pred ecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHH
Q 008712 321 NRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN 400 (557)
Q Consensus 321 ~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~ 400 (557)
.|++++||++++++.+++.+.+.|+.|+.|+..++|+++|.||..|+.++.|||++|||+...++|.+|.+.||+.+.|+
T Consensus 317 ~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn 396 (527)
T KOG0364|consen 317 NRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARN 396 (527)
T ss_pred chhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeE
Q 008712 401 IIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGI 480 (557)
Q Consensus 401 ~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gi 480 (557)
.+-+|+++||||++||.+|+.|...+...++-+++.+.+.+.||+.+||+|++|+|.+++..+..++..|..|. ..||+
T Consensus 397 ~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~-~~~gi 475 (527)
T KOG0364|consen 397 VIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQ-RVWGI 475 (527)
T ss_pred hccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcc-eeecc
Confidence 99999999999999999999999988888899999999999999999999999999999999999999998886 78899
Q ss_pred eCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCccC
Q 008712 481 DGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 481 d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~ 529 (557)
|..+|.+.||.+.++|+|+.+|.+..++|++++++|||+|+++....++
T Consensus 476 ~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 476 DGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred cCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 9999999999999999999999999999999999999999999887654
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.4e-91 Score=759.97 Aligned_cols=483 Identities=40% Similarity=0.689 Sum_probs=460.2
Q ss_pred HHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHHHHHHHHHHHHHHH
Q 008712 31 VADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEF 110 (557)
Q Consensus 31 l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGttt~viLa~~Ll~~~~~l 110 (557)
|+++|++||||+|++|||+++.|++++||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhhcccccCCCcc
Q 008712 111 IDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLR 190 (557)
Q Consensus 111 i~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~ 190 (557)
+++|+||..|++||+.|++.++++|++++++++..+ +.++++++|++++|+.+.|.+++++++++|+..+..
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~------- 152 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKS------- 152 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTT-------
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhcc-------
Confidence 999999999999999999999999999999987633 899999999999999999999999999999944432
Q ss_pred ccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCccccccccceEEecCHHHHHHHHHH
Q 008712 191 EVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKM 270 (557)
Q Consensus 191 ~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~ 270 (557)
.+|+. ++.++++.|++.++|++++|++|++++.++ +|+++++||+|++++++|++.++ .+.++.+++.+++..+.++
T Consensus 153 ~~~~~-~i~i~~i~g~~~~dS~li~Giv~~~~~~~~-~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~ 229 (485)
T PF00118_consen 153 NFDLD-NIKIIKIPGGSISDSELINGIVLDKGFSSP-NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQ 229 (485)
T ss_dssp THHGG-GEEEEEEESSSSGGEEEESEEEESSSBSST-TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHH
T ss_pred ccccc-chhhhhhccccccccccccceeeecccccc-ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhh
Confidence 14444 499999999999999999999999999998 89999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCCcCCccceE
Q 008712 271 EEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLF 350 (557)
Q Consensus 271 E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v 350 (557)
|+++++++++++.+.|+++|+++++|++.++++|.++||.+++++++++|++|+++||+++++++++++++.+|+ |+.+
T Consensus 230 e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~-~~~v 308 (485)
T PF00118_consen 230 EKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGF-CKSV 308 (485)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEE-EEEE
T ss_pred hhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhh-hhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988999 9999
Q ss_pred EEEEECCeEEEEEE--ecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhcc
Q 008712 351 EVKKIGDEFFAFIV--DCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (557)
Q Consensus 351 ~~~~ig~~~~~~l~--~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~ 428 (557)
++..+++++|++++ +|..++.+||+|||+++.+++|+|++++||+++++++++++++|||||++|++|+++|++++..
T Consensus 309 ~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~ 388 (485)
T PF00118_consen 309 EEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKS 388 (485)
T ss_dssp EEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHC
T ss_pred hhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhc
Confidence 99999999999999 5888999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHH
Q 008712 429 IEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKT 508 (557)
Q Consensus 429 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~ 508 (557)
.++++++++++|++||+.||++|++|||+|+.+++++|+..|..+ .++|||+.+|++.||.+.|||||+.+|+++|+.
T Consensus 389 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~--~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~ 466 (485)
T PF00118_consen 389 LSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG--NNYGIDLDTGEIVDMKEAGILDPLLVKISALKS 466 (485)
T ss_dssp SSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST--TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHH
T ss_pred ccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc--cccCcCccCCceeccccccchhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988665 489999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhcCCc
Q 008712 509 AIEAACMLLRIDDIVSGIK 527 (557)
Q Consensus 509 A~e~a~~lL~iD~ii~~~~ 527 (557)
|+|+|++|||||++|..+|
T Consensus 467 A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 467 AVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999998764
No 27
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.3e-90 Score=743.04 Aligned_cols=462 Identities=24% Similarity=0.356 Sum_probs=427.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
+..+|.+++..|++|+..++++++|||||+|++|||+++.|+++|||||+||+|+|+++|| +++|+++++++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ +.+.|.++++|++ ++++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~~~~l~~va~ts~------~~~~ 155 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--DKEEIAQVATISA------NGDE 155 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHhcc------cchH
Confidence 9999999999999999999999999999999999999999999999999999986 5788999998874 3689
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCccccCCceEEEEe
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~ 242 (557)
.+++++++|+..++. ++ .|.|.+..| ...++++++|++|++++.+|. +|+++++||+|+++|
T Consensus 156 ~ls~lv~~Av~~v~~---~g--------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d 223 (542)
T PRK00013 156 EIGKLIAEAMEKVGK---EG--------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITD 223 (542)
T ss_pred HHHHHHHHHHHHhCc---CC--------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEc
Confidence 999999999999974 23 278887776 778999999999999998872 458899999999999
Q ss_pred cCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC------CeEEecCC
Q 008712 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAG------VSAIRRLR 316 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~------I~~i~~v~ 316 (557)
+.+ ++++++. ++++.+.+.|++|||++++|++.++++|..++ |+++++.+
T Consensus 224 ~~i-------------~~~~~l~-----------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~ 279 (542)
T PRK00013 224 KKI-------------SNIQDLL-----------PVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPG 279 (542)
T ss_pred Ccc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCC
Confidence 964 4555544 57888999999999999999999999999996 88988776
Q ss_pred -----hhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCC----------------
Q 008712 317 -----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK---------------- 370 (557)
Q Consensus 317 -----~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~---------------- 370 (557)
+++|+||+.+||+++++ +++++++++||+ |+.+++.+ ++++++++|.+++
T Consensus 280 ~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 355 (542)
T PRK00013 280 FGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ-AKKVVVTK---DNTTIVDGAGDKEAIKARVAQIKAQIEET 355 (542)
T ss_pred cccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe-eeEEEEec---CEEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 88999999999999999 799999999999 99999875 8899999887654
Q ss_pred -------------------eEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCC
Q 008712 371 -------------------ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 371 -------------------~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~ 431 (557)
.+||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++++.+|+++ ...++
T Consensus 356 ~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~ 433 (542)
T PRK00013 356 TSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNG 433 (542)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCCh
Confidence 78999999999999999999999999999999998 9999999999999999988 67788
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHHH
Q 008712 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 511 (557)
++++++++|++||+.||++|++|||+|+.+++.+|+..| ++++|||+.+|++.||++.|||||+.||.++|+.|++
T Consensus 434 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~----~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~ 509 (542)
T PRK00013 434 DEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK----GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAAS 509 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 3679999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhcCCcc
Q 008712 512 AACMLLRIDDIVSGIKK 528 (557)
Q Consensus 512 ~a~~lL~iD~ii~~~~~ 528 (557)
+|++||+||++|...|+
T Consensus 510 ~a~~iL~id~iI~~~~~ 526 (542)
T PRK00013 510 VAGLLLTTEAVVADKPE 526 (542)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 99999999999988763
No 28
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.1e-89 Score=741.67 Aligned_cols=461 Identities=23% Similarity=0.345 Sum_probs=423.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhhccc
Q 008712 14 RESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEEV 89 (557)
Q Consensus 14 ~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~~~~ 89 (557)
..+|.+++..|+.|+..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+|++++|++|++++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 467899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHH
Q 008712 90 GDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDL 169 (557)
Q Consensus 90 GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ 169 (557)
||||||+++|+++||+++.+++++|+||..|++||++|++.++++|+++++|++ +.+.|.++++|+. +++++
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~~~~l~~va~ts~------~~~~~ 156 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--GSEEIAQVATISA------NGDEE 156 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------CChHH
Confidence 999999999999999999999999999999999999999999999999999986 5778999999884 36899
Q ss_pred HHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCC-cEEEEeEEEeccccCCC------CCccccCCceEEEEe
Q 008712 170 IADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 170 ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~d-s~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~ 242 (557)
+++++++|+..++. ++. +.+. .|++.++ +++++|++|++++.++. .|+++++||+|+++|
T Consensus 157 l~~lv~~Av~~v~~---~g~--------i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d 223 (542)
T PRK12849 157 IGELIAEAMEKVGK---DGV--------ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223 (542)
T ss_pred HHHHHHHHHHHhcc---CCc--------EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeec
Confidence 99999999999974 332 4443 5777765 89999999999998872 368999999999999
Q ss_pred cCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCeEEecCC
Q 008712 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRLR 316 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~------~I~~i~~v~ 316 (557)
+.+ .+.+++. ++++++.+.+++|||++++|++.++++|.++ +|+++++.+
T Consensus 224 ~~i-------------~~~~~~~-----------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~ 279 (542)
T PRK12849 224 KKI-------------SSLQDLL-----------PLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 279 (542)
T ss_pred CCc-------------CCHHHHH-----------HHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCC
Confidence 964 3445544 3678899999999999999999999999999 899998777
Q ss_pred -----hhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCC-----------------
Q 008712 317 -----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (557)
Q Consensus 317 -----~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~----------------- 369 (557)
+++|+|||.+||+++++ +++++++++||+ |+.|++.+ ++++++++|.++
T Consensus 280 ~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~ 355 (542)
T PRK12849 280 FGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR-AKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEET 355 (542)
T ss_pred ccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce-eeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 56699999999999999 689999889999 99999765 888999888664
Q ss_pred ------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCC
Q 008712 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 370 ------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~ 431 (557)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++ ..++
T Consensus 356 ~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g 433 (542)
T PRK12849 356 TSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNG 433 (542)
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCCh
Confidence 589999999999999999999999999999999998 99999999999999999988 7889
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHHH
Q 008712 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 511 (557)
++++++++|++||+.||++|++|||+|+.+++.+|+..| .++|||+.+|++.||++.|||||+.+|.++|+.|+|
T Consensus 434 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e 508 (542)
T PRK12849 434 DQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAAS 508 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 579999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhcCCccCC
Q 008712 512 AACMLLRIDDIVSGIKKKQ 530 (557)
Q Consensus 512 ~a~~lL~iD~ii~~~~~~~ 530 (557)
+|++||+||++|...|.+.
T Consensus 509 ~A~~iL~id~iI~~~~~~~ 527 (542)
T PRK12849 509 VAGLLLTTEALVADKPEEE 527 (542)
T ss_pred HHHHHHhHHHHHhcCCccC
Confidence 9999999999998876433
No 29
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4e-89 Score=738.04 Aligned_cols=462 Identities=21% Similarity=0.325 Sum_probs=424.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
+..++.+++..|++|++.++++|+|||||+||+|||+++.|+++|||||+||+++|+++|| +++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 3567889999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ +.+.+.+++++++ ++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~--~~~~l~~va~~s~------~~~~ 156 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVT--TNAEIAQVATISA------NGDA 156 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChH
Confidence 9999999999999999999999999999999999999999999999999999987 4678999998874 4789
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCccccCCceEEEEe
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~ 242 (557)
++++++++|+..++. ++. +.|.+.. +...++++++|++|++++.+|. +|+++++||+|+++|
T Consensus 157 ~l~~lv~~Av~~vg~---~g~--------i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d 224 (541)
T PRK12851 157 EIGRLVAEAMEKVGN---EGV--------ITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHE 224 (541)
T ss_pred HHHHHHHHHHHHhcc---cCc--------eEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEc
Confidence 999999999999974 332 5666655 4667899999999999999873 589999999999999
Q ss_pred cCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCC------eEEec--
Q 008712 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR-- 314 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I------~~i~~-- 314 (557)
++++ +.++ +.++++.+.+.+++|||++++|++.++++|..++| +++++
T Consensus 225 ~~i~-------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~ 280 (541)
T PRK12851 225 KKIS-------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPG 280 (541)
T ss_pred CCcC-------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCc
Confidence 9853 2222 55688999999999999999999999999999997 77775
Q ss_pred ---CChhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCC-----------------
Q 008712 315 ---LRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (557)
Q Consensus 315 ---v~~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~----------------- 369 (557)
+++++|+||+.+||+++++ +++++++++||+ |+.|++.+ ++++++.+|.++
T Consensus 281 ~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~ 356 (541)
T PRK12851 281 FGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR-AKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEET 356 (541)
T ss_pred cccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC-ccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 788898889999 99999887 888999988664
Q ss_pred ------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCC
Q 008712 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 370 ------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~ 431 (557)
.++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|++++.. ++
T Consensus 357 ~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~ 434 (541)
T PRK12851 357 TSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NG 434 (541)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-Cc
Confidence 388999999999999999999999999999999998 9999999999999999988765 88
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHHH
Q 008712 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 511 (557)
++++++++|++||+.||++|++|||+|+.+++.+|+..| .++|||+.+|++.||++.|||||+.||.++|+.|+|
T Consensus 435 ~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e 509 (541)
T PRK12851 435 DQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAAS 509 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhcCCccC
Q 008712 512 AACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 512 ~a~~lL~iD~ii~~~~~~ 529 (557)
+|++||+||++|...|.+
T Consensus 510 ~A~~iL~id~iI~~~~~~ 527 (541)
T PRK12851 510 VAGLLLTTEAMVAEKPKK 527 (541)
T ss_pred HHHHHHhHHHhhhcCCCC
Confidence 999999999999887643
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.7e-88 Score=736.05 Aligned_cols=463 Identities=21% Similarity=0.330 Sum_probs=423.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
+..+|.+++..|++||..|+++++|||||+||+|||+++.|+++|||||+||+++++++|| +++|+++++++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 5678899999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++ +.+.+.++|+|+++ +++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~~~~l~~va~ts~~------~~~ 167 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--TKEDILNVATISAN------GDV 167 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHcC------ChH
Confidence 9999999999999999999999999999999999999999999999999999996 57789999998853 467
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCc-EEEEeEEEeccccCCC------CCccccCCceEEEE
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds-~li~Giv~~~~~~~~~------~~~~~~~n~kIll~ 241 (557)
++++++++|+..++. +|. |.+..|++.+++ ++++|++|++++.+|. .|++.++||+|+++
T Consensus 168 ~l~~li~eAv~~vg~---~g~----------I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~ 234 (555)
T PTZ00114 168 EIGSLIADAMDKVGK---DGT----------ITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVT 234 (555)
T ss_pred HHHHHHHHHHHHhCc---CCc----------EEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEE
Confidence 899999999999974 332 445679999998 7999999999998872 36899999999999
Q ss_pred ecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC------CeEEec-
Q 008712 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAG------VSAIRR- 314 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~------I~~i~~- 314 (557)
|++|+ +.++ +.++++.+.+.+++|+|++++|++.++++|..++ |+++++
T Consensus 235 d~~L~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~ 290 (555)
T PTZ00114 235 DKKIS-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAP 290 (555)
T ss_pred cCCCC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecC
Confidence 99986 2333 4457789999999999999999999999999986 888866
Q ss_pred ----CChhHHHHHHHHhCCeeccCC------CCCCCCCcCCccceEEEEEECCeEEEEEEecC-----------------
Q 008712 315 ----LRKTDNNRIAKACGAVIVNRP------DELQESDVGTGAGLFEVKKIGDEFFAFIVDCK----------------- 367 (557)
Q Consensus 315 ----v~~~~l~~i~~~tG~~ii~~~------~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~----------------- 367 (557)
+++++|+||+.+||++++++. +++++++||+ |+.|++.+ ++++++.++.
T Consensus 291 ~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~-a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~ 366 (555)
T PTZ00114 291 GFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGS-AKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIE 366 (555)
T ss_pred CCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCC-CceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHH
Confidence 778999999999999999997 7788888999 99999988 4566666654
Q ss_pred ------------------CCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhc--
Q 008712 368 ------------------DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS-- 427 (557)
Q Consensus 368 ------------------~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~-- 427 (557)
+++++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++|+..|++++.
T Consensus 367 ~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~ 445 (555)
T PTZ00114 367 RTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDN 445 (555)
T ss_pred hcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhcc
Confidence 67899999999999999999999999999999999998 999999999999999998875
Q ss_pred cCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHH
Q 008712 428 SIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFK 507 (557)
Q Consensus 428 ~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~ 507 (557)
..++++++++++|++||+.||++|++|||+|+.+++.+|+. .+ ++++|||+.+|++.||++.|||||+.||+++|+
T Consensus 446 ~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~ 521 (555)
T PTZ00114 446 ELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KK-DPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALV 521 (555)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cC-CCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHH
Confidence 56789999999999999999999999999999999999976 23 367999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHhhcCCccC
Q 008712 508 TAIEAACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 508 ~A~e~a~~lL~iD~ii~~~~~~ 529 (557)
.|+++|++||+||++|...|..
T Consensus 522 ~A~~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 522 DAASVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHHHHHHhHHHHHHhCCcc
Confidence 9999999999999999987654
No 31
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.4e-88 Score=732.51 Aligned_cols=471 Identities=22% Similarity=0.330 Sum_probs=424.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChH----HHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPA----AKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~~~~~~~~ 88 (557)
+..+|.+++..|++|+..|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 35678899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++.+++ +.+.|.++++++++ .++
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~~~~l~~va~~s~~------~~~ 156 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--SSKEIAQVATISAN------GDE 156 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------CHH
Confidence 9999999999999999999999999999999999999999999999999999986 57789999998754 478
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCccccCCceEEEEe
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~ 242 (557)
.+++++++|+..++. +|. |.+.... ..-.++++++|++|++++.+|. +|+++++||+|+++|
T Consensus 157 ~l~~lv~eAv~~vg~---~g~--------i~v~~~~-~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d 224 (544)
T PRK12850 157 SIGEMIAEAMDKVGK---EGV--------ITVEEAK-TLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHE 224 (544)
T ss_pred HHHHHHHHHHHHhcc---cCc--------eeeEEcc-ccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEe
Confidence 999999999999974 332 2332211 1226899999999999998872 358899999999999
Q ss_pred cCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCC------eEEec--
Q 008712 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRR-- 314 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I------~~i~~-- 314 (557)
+.++ +.++ +.++++.+.+.|++|||++++|++.++++|..++| +++++
T Consensus 225 ~~i~-------------~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~ 280 (544)
T PRK12850 225 KKIS-------------NLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPG 280 (544)
T ss_pred cccC-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCC
Confidence 9752 2222 56688999999999999999999999999999999 88877
Q ss_pred ---CChhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCC-----------------
Q 008712 315 ---LRKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP----------------- 369 (557)
Q Consensus 315 ---v~~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~----------------- 369 (557)
+++++|+||+++||+++++ +++++++++||+ |+.+++.+ ++++++.+|.++
T Consensus 281 ~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~ 356 (544)
T PRK12850 281 FGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR-AKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEET 356 (544)
T ss_pred cCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC-CcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 789999889999 99999876 788999988764
Q ss_pred ------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCC
Q 008712 370 ------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 370 ------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~ 431 (557)
+++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...++
T Consensus 357 ~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~ 434 (544)
T PRK12850 357 TSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANA 434 (544)
T ss_pred ccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCCh
Confidence 489999999999999999999999999999999997 9999999999999999987 66788
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHHH
Q 008712 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 511 (557)
++++++++|++||+.||++|++|||+|+.+++.+|+..| .++|||+.+|++.||++.|||||+.||.++|+.|++
T Consensus 435 ~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~ 509 (544)
T PRK12850 435 DETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAAS 509 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876 579999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhcCCccC-CCCCCCCCC
Q 008712 512 AACMLLRIDDIVSGIKKK-QAPGSGQTP 538 (557)
Q Consensus 512 ~a~~lL~iD~ii~~~~~~-~~~~~~~~~ 538 (557)
+|++||++|++|...|.+ ++++.|..|
T Consensus 510 ~a~~iL~id~iI~~~~~~~~~~~~~~~~ 537 (544)
T PRK12850 510 IAALLITTEAMVAEAPKKAAAAAAGPGP 537 (544)
T ss_pred HHHHHHhHHHhhccCCCCCCCCCCCCCC
Confidence 999999999999887653 333343333
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.1e-88 Score=725.98 Aligned_cols=456 Identities=25% Similarity=0.373 Sum_probs=421.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
+..+|.+++..|++|+..|+++++|||||+||+|||+++.|+++|||||+||+++++++|| +++|+++++++|+++
T Consensus 2 ~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 81 (520)
T cd03344 2 DIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 81 (520)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccc
Confidence 3567899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++++ +.+.+.++|+|+++ .++
T Consensus 82 ~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~~~~l~~va~ts~~------~~~ 153 (520)
T cd03344 82 AGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--TKEEIAQVATISAN------GDE 153 (520)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhcC------ChH
Confidence 9999999999999999999999999999999999999999999999999999997 57899999999875 378
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCC-cEEEEeEEEeccccCCC------CCccccCCceEEEE
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLED-SRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~d-s~li~Giv~~~~~~~~~------~~~~~~~n~kIll~ 241 (557)
++++++++|+..++. ++ .|.+ .+|++..| +++++|++|++++.+|. .|+++++||+|+++
T Consensus 154 ~l~~lv~~A~~~v~~---~~--------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~ 220 (520)
T cd03344 154 EIGELIAEAMEKVGK---DG--------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLT 220 (520)
T ss_pred HHHHHHHHHHHHhcc---CC--------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEE
Confidence 999999999999874 23 2555 46888888 79999999999988862 24578999999999
Q ss_pred ecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCC------eEEecC
Q 008712 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV------SAIRRL 315 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I------~~i~~v 315 (557)
|++| .+++++. ++++.+.+.|++|||++++|++.++++|..++| +++++.
T Consensus 221 d~~l-------------~~~~~l~-----------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~ 276 (520)
T cd03344 221 DKKI-------------SSIQELL-----------PILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAP 276 (520)
T ss_pred CCCC-------------CCHHHHH-----------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCC
Confidence 9995 3444544 467889999999999999999999999999998 787654
Q ss_pred -----ChhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCC----------------
Q 008712 316 -----RKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP---------------- 369 (557)
Q Consensus 316 -----~~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~---------------- 369 (557)
++++++||+.+||+++++ ++++++++++|+ |+.+++.+ ++++++.+|..+
T Consensus 277 ~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 352 (520)
T cd03344 277 GFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGR-AKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEE 352 (520)
T ss_pred CCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCc-ceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999 889998889999 99999877 788899888654
Q ss_pred -------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCC
Q 008712 370 -------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIE 430 (557)
Q Consensus 370 -------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~ 430 (557)
+.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++. .+
T Consensus 353 ~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~ 430 (520)
T cd03344 353 TTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LN 430 (520)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CC
Confidence 599999999999999999999999999999999998 999999999999999999887 88
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHH
Q 008712 431 GIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAI 510 (557)
Q Consensus 431 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 510 (557)
+++++++++|++||+.||++|++|||+|+.+++++|+..| .++|||+.+|++.||++.|||||+.||.++|+.|+
T Consensus 431 ~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~-----~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~ 505 (520)
T cd03344 431 GDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-----DGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAA 505 (520)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc-----CCEeEECCCCcccchHhccCeecHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877 37999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhc
Q 008712 511 EAACMLLRIDDIVS 524 (557)
Q Consensus 511 e~a~~lL~iD~ii~ 524 (557)
++|++||++|.+|.
T Consensus 506 ~~a~~iL~id~~i~ 519 (520)
T cd03344 506 SVASLLLTTEALVV 519 (520)
T ss_pred HHHHHHHhhheEEe
Confidence 99999999999885
No 33
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-87 Score=727.76 Aligned_cols=462 Identities=20% Similarity=0.299 Sum_probs=421.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccc----cChHHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDV----AHPAAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~----~hP~a~ll~~~~~~~~~~ 88 (557)
+..+|.+++..|++|+..|+++|+|||||+||+|||+++.|+++|||||+||+++|++ +||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 3567889999999999999999999999999999999999999999999999999999 499999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||++|++.++++|++++++++. .+.+.++++++.+ .++
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~--~~~l~~va~~s~~------~~~ 156 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVAS--SAEIAQVGTISAN------GDA 156 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC--HHHHHHHHhhhcC------ChH
Confidence 99999999999999999999999999999999999999999999999999999874 5669999988753 368
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCC-CCcEEEEeEEEeccccCCC------CCccccCCceEEEE
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~-~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~ 241 (557)
.+++++++|+.++++ ++. |.+.. |+.. .++++++|+.|++++.+|. .|+..++||+|+++
T Consensus 157 ~l~~li~eA~~~vg~---~g~--------i~v~~--g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~ 223 (545)
T PRK12852 157 AIGKMIAQAMQKVGN---EGV--------ITVEE--NKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLH 223 (545)
T ss_pred HHHHHHHHHHHHhcc---CCc--------eeeec--CCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEe
Confidence 899999999999985 332 55543 6665 6999999999999998873 58899999999999
Q ss_pred ecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCeEEecC
Q 008712 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRL 315 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~------~I~~i~~v 315 (557)
++.+ .+.+ .+.++++.+.+.+++|||++++|++.++++|..+ +|+++++.
T Consensus 224 d~~i-------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~ 279 (545)
T PRK12852 224 EKKL-------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAP 279 (545)
T ss_pred cCcc-------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecC
Confidence 9864 2333 3556789999999999999999999999999986 79999855
Q ss_pred C-----hhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCC-----------------
Q 008712 316 R-----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKD----------------- 368 (557)
Q Consensus 316 ~-----~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~----------------- 368 (557)
+ +++|+||+.+||+++++ +++++++++||+ |+.+++.+ ++++++.++..
T Consensus 280 ~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~-~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~ 355 (545)
T PRK12852 280 GFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR-AKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEE 355 (545)
T ss_pred CcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC-CcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4 89999999999999999 789999889999 99999887 68888988765
Q ss_pred ------------------CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCC
Q 008712 369 ------------------PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIE 430 (557)
Q Consensus 369 ------------------~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~ 430 (557)
++++||+|||+|+.+++|+||+++||++++++++++| +|||||++|++|+.+|.+++.. +
T Consensus 356 ~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~ 433 (545)
T PRK12852 356 TTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-N 433 (545)
T ss_pred cccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-C
Confidence 3789999999999999999999999999999999998 9999999999999999988766 7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHH
Q 008712 431 GIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAI 510 (557)
Q Consensus 431 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 510 (557)
+++|+++++|++||+.||++|++|||+|+.+++.+|+..| ++++|||+.+|++.||++.|||||+.||+++|+.|+
T Consensus 434 ~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (545)
T PRK12852 434 ADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK----SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAA 509 (545)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc----CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHH
Confidence 7899999999999999999999999999999999998877 368999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhcCCccC
Q 008712 511 EAACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 511 e~a~~lL~iD~ii~~~~~~ 529 (557)
|+|++||+||++|...|++
T Consensus 510 e~a~~iL~id~iI~~~~~~ 528 (545)
T PRK12852 510 SVAGLLVTTEAMVAELPKK 528 (545)
T ss_pred HHHHHHHhHHHHhhcCCCC
Confidence 9999999999999876643
No 34
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.3e-87 Score=725.36 Aligned_cols=458 Identities=23% Similarity=0.355 Sum_probs=418.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
+..+|.+++..|++|+..++++++|||||+||+|||+++.|+++|||||+||+++|++.|| +++|+++++++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 3567899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++++ +.+.+.++++|+. ++++
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~~~~l~~va~ts~------~~~~ 154 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--GKKEIAQVATISA------NNDE 154 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHhc------cChH
Confidence 9999999999999999999999999999999999999999999999999999987 5788999999874 3689
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCC-CCcEEEEeEEEeccccCCC------CCccccCCceEEEE
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~-~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~ 241 (557)
++++++++|+..+++ ++. |.|.. |+.. +++++++|++|++++.++. +|+++++||+|+++
T Consensus 155 ~l~~lv~~A~~~v~~---~~~--------i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~ 221 (524)
T TIGR02348 155 EIGSLIAEAMEKVGK---DGV--------ITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILIT 221 (524)
T ss_pred HHHHHHHHHHHHhCc---CCc--------Eeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeec
Confidence 999999999999875 332 45543 5555 6799999999999998872 35889999999999
Q ss_pred ecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc------CCeEEecC
Q 008712 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA------GVSAIRRL 315 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~------~I~~i~~v 315 (557)
|+.+ .+++++ .++++.+.+.|++|||++++|++.++++|..+ +|+++++.
T Consensus 222 d~~i-------------~~~~~i-----------~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~ 277 (524)
T TIGR02348 222 DKKI-------------SNIKDL-----------LPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAP 277 (524)
T ss_pred cCCc-------------CCHHHH-----------HHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECC
Confidence 9975 344443 45788999999999999999999999999987 78899766
Q ss_pred C-----hhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCC---------------
Q 008712 316 R-----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPK--------------- 370 (557)
Q Consensus 316 ~-----~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~--------------- 370 (557)
+ +++|+|||++||+++++ +++++++++||+ |+.+++.+ ++++++.+|..++
T Consensus 278 ~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~ 353 (524)
T TIGR02348 278 GFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGK-AKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEE 353 (524)
T ss_pred CccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCC-ceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 4 48999999999999999 899999999999 99999875 7888998875543
Q ss_pred --------------------eEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCC
Q 008712 371 --------------------ACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIE 430 (557)
Q Consensus 371 --------------------~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~ 430 (557)
++||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++|+.+|++ +...+
T Consensus 354 ~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~ 431 (524)
T TIGR02348 354 TTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDN 431 (524)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCC
Confidence 78999999999999999999999999999999998 999999999999999998 77778
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHH
Q 008712 431 GIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAI 510 (557)
Q Consensus 431 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 510 (557)
+++++++++|++||+.||++|++|||+|+.+++++|+.. .+ ++|||+.+|++.||++.|||||+.||.++|+.|+
T Consensus 432 ~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~---~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~ 506 (524)
T TIGR02348 432 EDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG---NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAA 506 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC---CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999864 22 3999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhcCC
Q 008712 511 EAACMLLRIDDIVSGI 526 (557)
Q Consensus 511 e~a~~lL~iD~ii~~~ 526 (557)
++|++||++|++|...
T Consensus 507 ~~a~~iL~id~ii~~~ 522 (524)
T TIGR02348 507 SIAGLLLTTEAVVADK 522 (524)
T ss_pred HHHHHHHhHHHHhhcC
Confidence 9999999999999754
No 35
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-89 Score=680.64 Aligned_cols=517 Identities=32% Similarity=0.482 Sum_probs=484.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccC
Q 008712 12 LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGD 91 (557)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GD 91 (557)
.....|..+|..|..|+..+++++++||||-|++||++++.|++.+||||+|||+.+.++||++++|++.++.|++++||
T Consensus 12 ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgD 91 (545)
T KOG0360|consen 12 GERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGD 91 (545)
T ss_pred CCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhh-cccccCCCCHHHHHHHHHHHhhcccccchhHHH
Q 008712 92 GTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDK-IAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLI 170 (557)
Q Consensus 92 Gttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~l 170 (557)
|||++++++++|++++.+|+..++||..|++||+.|+..+++++.+ +++|++...++.|.++++|+++||+.....++|
T Consensus 92 gttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f 171 (545)
T KOG0360|consen 92 GTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFF 171 (545)
T ss_pred CceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHH
Confidence 9999999999999999999999999999999999999999999964 788999888999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCccccc
Q 008712 171 ADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKG 250 (557)
Q Consensus 171 s~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~ 250 (557)
++++++|+..+..-..+|....-+. .++|.|.+|.+..+|.++.|+.+++...+. .|+.++.|+||+++|+.|...++
T Consensus 172 ~~~Vvda~l~v~~~~~~ge~~ypi~-~vnILkahG~s~~eS~l~~GyaLnc~~asq-~m~~~i~~~Kiacld~~Lqk~km 249 (545)
T KOG0360|consen 172 TEMVVDALLAVKILDINGEPHYPIN-SVNILKAHGKSQIESMLLPGYALNCSVASQ-MMPLRIKNAKIACLDFTLQKTKM 249 (545)
T ss_pred HHHHHHHHHHHhhcccCCceecccc-ceeEEecCCccchhheeecceeeeccHhhh-ccccccccceeeeEecccccccc
Confidence 9999999988764322343222232 489999999999999999999999988876 89999999999999999999999
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCe
Q 008712 251 ENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 251 ~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~~ 330 (557)
+....+.+.+++.++++.+.|..+.++.+++|...|+|||+++++|||..++||.+.|+++++|+++++|++|+++||++
T Consensus 250 ~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat 329 (545)
T KOG0360|consen 250 KLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGAT 329 (545)
T ss_pred cccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC------CCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 008712 331 IVNRPDE------LQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKN 404 (557)
Q Consensus 331 ii~~~~~------l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~ 404 (557)
+++++.+ +.++.+|+ |+.|...+|+++.++++.+.+.. .|+|+|||++++.+||++|++|||||++|..+++
T Consensus 330 ~~sSla~l~geetf~~~~lG~-a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes 407 (545)
T KOG0360|consen 330 LLSSLANLEGEETFEPASLGS-ADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRTLES 407 (545)
T ss_pred eeehhhccccccccChhhccc-hhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHHhcc
Confidence 9999974 55678999 99999999999999999997765 8999999999999999999999999999999999
Q ss_pred CCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC--C-----CCce
Q 008712 405 PKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHAN--G-----ENAW 477 (557)
Q Consensus 405 g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~--~-----~~~~ 477 (557)
+++||||||+|.+|+-+|+.++.+..+++++++..|+.||..||++|+.|++.|+.++++++|..|.. . ...|
T Consensus 408 ~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~ 487 (545)
T KOG0360|consen 408 KSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQ 487 (545)
T ss_pred CccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999998862 1 1368
Q ss_pred eeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCccCCCC
Q 008712 478 IGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 532 (557)
Q Consensus 478 ~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~~~~~ 532 (557)
+|+|+.+|++.|.++.|+++|..+|...|+.|+|.+.++||||++|...|..++.
T Consensus 488 ~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~~ 542 (545)
T KOG0360|consen 488 YGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQVA 542 (545)
T ss_pred hCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCcccccc
Confidence 9999999999999999999999999999999999999999999999888765544
No 36
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=4.9e-86 Score=713.89 Aligned_cols=462 Identities=23% Similarity=0.322 Sum_probs=413.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHH----HHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAA----KSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a----~ll~~~~~~~~~~ 88 (557)
+..+|.++|++.++||..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||++ +|+++++++|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 356788999999999999999999999999999999999999999999999999999999998 5888899999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||++|.+.+++.|++++++++ +.+.|.++|+++++ +++
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d~~~L~~VA~ts~~------~~~ 155 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--DIQAITQVASISAG------NDE 155 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhcc------ChH
Confidence 9999999999999999999999999999999999999999999999999999997 57889999998853 689
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC------CCccccCCceEEEEe
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILLD 242 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~~ 242 (557)
.+++++++|+.+++. +|. |.+.. .++...++++++|++|++++.+|. .|+.+++||+|+++|
T Consensus 156 ~l~~lv~eAv~~vg~---~g~--------i~~~~-g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d 223 (529)
T CHL00093 156 EVGSMIADAIEKVGR---EGV--------ISLEE-GKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTD 223 (529)
T ss_pred HHHHHHHHHHHHhcc---CCc--------eeecC-CCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhc
Confidence 999999999999975 342 44422 223456789999999999998873 333469999999999
Q ss_pred cCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHH--HH----cCCeEEecC-
Q 008712 243 SPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYL--SK----AGVSAIRRL- 315 (557)
Q Consensus 243 ~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L--~~----~~I~~i~~v- 315 (557)
++|++.+ ..+.++++.+.+.+++++|++++|++.++++| ++ .+|+++++.
T Consensus 224 ~~le~~~-----------------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~ 280 (529)
T CHL00093 224 KKITLVQ-----------------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPG 280 (529)
T ss_pred CCCCchH-----------------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCC
Confidence 9998532 12556888999999999999999999777766 66 489999987
Q ss_pred ----ChhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEEECCeEEEEEEe---------cCC---------
Q 008712 316 ----RKTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKKIGDEFFAFIVD---------CKD--------- 368 (557)
Q Consensus 316 ----~~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~---------~~~--------- 368 (557)
++++|+||+.+||+++++ +++++++++||+ |+.+++.+ ++++++++ |..
T Consensus 281 ~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 356 (529)
T CHL00093 281 FGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQ-ARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIAD 356 (529)
T ss_pred CCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCc-ceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcC
Confidence 458899999999999999 799999999999 99999875 67788863 221
Q ss_pred ----------------CCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhc-cCCC
Q 008712 369 ----------------PKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSS-SIEG 431 (557)
Q Consensus 369 ----------------~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~-~~~~ 431 (557)
+.++||+|||+|+.+++|++|+++||++++|+++++| +|||||++|++|+.+|++++. ..++
T Consensus 357 ~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g 435 (529)
T CHL00093 357 SSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKE 435 (529)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCCh
Confidence 1488899999999999999999999999999999998 999999999999999999876 6888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHHH
Q 008712 432 IEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIE 511 (557)
Q Consensus 432 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e 511 (557)
++++++++|++||+.||++|++|||+|+.+++.+++.. +.++|||+.+|++.||++.|||||+.||.++|+.|+|
T Consensus 436 ~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~-----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e 510 (529)
T CHL00093 436 DELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ-----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAAS 510 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc-----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999754 2589999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhcCCc
Q 008712 512 AACMLLRIDDIVSGIK 527 (557)
Q Consensus 512 ~a~~lL~iD~ii~~~~ 527 (557)
+|++||+||++|...|
T Consensus 511 ~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 511 IASMILTTECIIVDKK 526 (529)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999998765
No 37
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2e-85 Score=709.18 Aligned_cols=462 Identities=22% Similarity=0.308 Sum_probs=417.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhccccc----ChHHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA----HPAAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~----hP~a~ll~~~~~~~~~~ 88 (557)
+..+|.+++..|++|+..++++|++||||+||+|||.++.|+++|||||+||++++++. ||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 35678999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
+||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|++++++++. .+.+.++++++.+ +++
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~--~~~l~~va~~s~~------~d~ 156 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTS--NDEIAQVGTISAN------GDA 156 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCC--HHHHHHHHHHHhc------Cch
Confidence 99999999999999999999999999999999999999999999999999999974 4679999998754 457
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCC-CCcEEEEeEEEeccccCCC------CCccccCCceEEEE
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~-~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~ 241 (557)
.+++++++|+.+++. +|. |.+.. ++.. .++++++|++|++++.+|. .++.+++||+|+++
T Consensus 157 ~i~~lv~~Av~~vg~---~g~--------i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~ 223 (546)
T PRK14104 157 EIGKFLADAMKKVGN---EGV--------ITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILIN 223 (546)
T ss_pred HHHHHHHHHHHHhcc---CCc--------eeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEe
Confidence 899999999999985 342 55654 3344 5899999999999998871 34678999999999
Q ss_pred ecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH------cCCeEEecC
Q 008712 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSK------AGVSAIRRL 315 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~------~~I~~i~~v 315 (557)
+..+ .+.++ +.++++.+.+.+++|||++++|++.++++|.. .+|+++++.
T Consensus 224 d~~i-------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~ 279 (546)
T PRK14104 224 EKKL-------------SSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAP 279 (546)
T ss_pred hhhh-------------cCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEecc
Confidence 9553 34434 44678999999999999999999999999985 467888665
Q ss_pred C-----hhHHHHHHHHhCCeeccC-----CCCCCCCCcCCccceEEEEEECCeEEEEEEecCCC----------------
Q 008712 316 R-----KTDNNRIAKACGAVIVNR-----PDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDP---------------- 369 (557)
Q Consensus 316 ~-----~~~l~~i~~~tG~~ii~~-----~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~---------------- 369 (557)
+ +++|+||+.+||++++++ ++++++++||+ |+.+++ ++++++++.+|..+
T Consensus 280 ~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~-a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~ 355 (546)
T PRK14104 280 GFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGR-AKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEE 355 (546)
T ss_pred CCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCc-eeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 5 899999999999999998 89999889999 999885 56899999998764
Q ss_pred -------------------CeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCC
Q 008712 370 -------------------KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIE 430 (557)
Q Consensus 370 -------------------~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~ 430 (557)
+++||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..+
T Consensus 356 ~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~ 433 (546)
T PRK14104 356 TTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKN 433 (546)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCC
Confidence 899999999999999999999999999999999998 99999999999999999874 357
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHH
Q 008712 431 GIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAI 510 (557)
Q Consensus 431 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 510 (557)
+++++++++|++||+.||++|++|||+|+.+++.+|+..| ++++|||+.+|++.||++.|||||+.||+++|+.|+
T Consensus 434 ~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 509 (546)
T PRK14104 434 DDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE----QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAA 509 (546)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC----CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999998654 367999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhcCCccC
Q 008712 511 EAACMLLRIDDIVSGIKKK 529 (557)
Q Consensus 511 e~a~~lL~iD~ii~~~~~~ 529 (557)
++|++||+||++|...|++
T Consensus 510 ~~a~~iL~id~~I~~~~~~ 528 (546)
T PRK14104 510 SVAALLITTEAMVAELPKK 528 (546)
T ss_pred HHHHHHHHHHHHHhcCCcC
Confidence 9999999999999876643
No 38
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=7.4e-86 Score=715.85 Aligned_cols=466 Identities=21% Similarity=0.316 Sum_probs=416.4
Q ss_pred cccccH--HHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhh
Q 008712 13 KRESGT--KVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQD 86 (557)
Q Consensus 13 ~~~~g~--~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~ 86 (557)
+..+|. ++|+..++|++.|+++|++||||+||+|||+++.|+++|||||+||+|+|++.|| +++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 456777 7999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccch
Q 008712 87 EEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQF 166 (557)
Q Consensus 87 ~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~ 166 (557)
+++||||||++||+++||+++.+++++|+||..|++||++|.+.++++|++++.+++ + +.|.++|+++++ +
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-~~L~~vA~tS~~------~ 208 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-SELADVAAVSAG------N 208 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-HHHHHHHHHhcc------C
Confidence 999999999999999999999999999999999999999999999999999999886 2 569999998854 5
Q ss_pred hHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCc-EEEEeEEEeccccCCC------CCccccCCceEE
Q 008712 167 GDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDS-RVLKGVMFNKDVVAPG------KMRRKIVNPRII 239 (557)
Q Consensus 167 ~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds-~li~Giv~~~~~~~~~------~~~~~~~n~kIl 239 (557)
++.|++++++|+.++++ +|. |.+. .|++.+++ ++++|++|+++|.+|. +|+++++||+|+
T Consensus 209 ~~~i~~liaeAv~~Vg~---~g~--------i~v~--~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Il 275 (600)
T PLN03167 209 NYEVGNMIAEAMSKVGR---KGV--------VTLE--EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLL 275 (600)
T ss_pred cHHHHHHHHHHHHHhcc---CCc--------EEec--cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEE
Confidence 67899999999999985 342 4443 58888887 8999999999998872 789999999999
Q ss_pred EEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH------HcCCeEEe
Q 008712 240 LLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLS------KAGVSAIR 313 (557)
Q Consensus 240 l~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~------~~~I~~i~ 313 (557)
++|+. +.+.+++.+ +++.+.+.++++||++++|++.++++|. ..+|++++
T Consensus 276 l~d~~-------------i~~~~~l~~-----------~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk 331 (600)
T PLN03167 276 LVDKK-------------ITNARDLIG-----------ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALK 331 (600)
T ss_pred EEccc-------------cCCHHHHHH-----------HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEE
Confidence 99986 455666665 4467788899999999999999999999 56789998
Q ss_pred cCC-----hhHHHHHHHHhCCeecc-----CCCCCCCCCcCCccceEEEEE-----ECC--------eEEEEEEecC---
Q 008712 314 RLR-----KTDNNRIAKACGAVIVN-----RPDELQESDVGTGAGLFEVKK-----IGD--------EFFAFIVDCK--- 367 (557)
Q Consensus 314 ~v~-----~~~l~~i~~~tG~~ii~-----~~~~l~~~~lG~~~~~v~~~~-----ig~--------~~~~~l~~~~--- 367 (557)
+.+ +++|+||+.+||+++++ +++++++++||+ |+.|++.+ +|+ +|+.+|+++.
T Consensus 332 ~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~-a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~ 410 (600)
T PLN03167 332 APGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGT-AAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAA 410 (600)
T ss_pred cccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCce-eeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhcc
Confidence 875 88999999999999999 788898889999 99999987 765 4677776653
Q ss_pred ----------------CCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCC
Q 008712 368 ----------------DPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEG 431 (557)
Q Consensus 368 ----------------~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~ 431 (557)
.+.+++|+|||+|+.+++|+||+++||++++|+++++| +|||||++|++|+.+|++++...++
T Consensus 411 ~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~ 489 (600)
T PLN03167 411 EQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLEN 489 (600)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCC
Confidence 11244445999999999999999999999999999999 9999999999999999998877777
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHHHH
Q 008712 432 IEK-WPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKTAI 510 (557)
Q Consensus 432 ~~~-~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~ 510 (557)
.+| .+++++++||+.||++|++|||+|+.+++.+|+..+ ++++|||+.+|++.||++.|||||+.||+++|+.|+
T Consensus 490 ~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~----~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~ 565 (600)
T PLN03167 490 DEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSND----NPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAA 565 (600)
T ss_pred hhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcC----CCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHH
Confidence 766 559999999999999999999999999999997432 368999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhcCCccCC
Q 008712 511 EAACMLLRIDDIVSGIKKKQ 530 (557)
Q Consensus 511 e~a~~lL~iD~ii~~~~~~~ 530 (557)
++|++||+||++|...|.+.
T Consensus 566 ~~A~~iL~iD~iI~~~~~~~ 585 (600)
T PLN03167 566 SVAKTFLTSDCVVVEIKEPE 585 (600)
T ss_pred HHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999875443
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-85 Score=655.17 Aligned_cols=511 Identities=29% Similarity=0.480 Sum_probs=474.7
Q ss_pred CCCc-ccccccccccccH-HHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHH
Q 008712 2 HSPV-LVLKDSLKRESGT-KVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMI 79 (557)
Q Consensus 2 ~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~ 79 (557)
|+++ .++++|.+..+|. ++..+|+.||++++++++|+|||+||+||++++.|+..+|||.+||+++|+++||+++||+
T Consensus 7 ~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv 86 (537)
T KOG0362|consen 7 KAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLV 86 (537)
T ss_pred CCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHH
Confidence 4444 5789999998885 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccc-c-CCCCHHHHHHHHHHH
Q 008712 80 ELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMP-I-DTNDRATMLGLVKSC 157 (557)
Q Consensus 80 ~~~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~-v-~~~~~~~l~~ia~t~ 157 (557)
++++.|+++.||||+++|+|+++||++|.+++..|++|..|++||+.|.+.+++.|+++.+. + +..|.+ .+++++
T Consensus 87 ~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~ 163 (537)
T KOG0362|consen 87 EATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSV 163 (537)
T ss_pred HHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887553 1 223344 788888
Q ss_pred hhcccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCce
Q 008712 158 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPR 237 (557)
Q Consensus 158 l~sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~k 237 (557)
+.+|... ..+++++++++|...+.+. +. |+.+ +|+|+|+.|+++++|+++.|++|++.... .+++.+..|
T Consensus 164 i~skq~~-~ed~l~~lVa~ac~si~p~---~~--Fnvd-nIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG---~v~~ak~ar 233 (537)
T KOG0362|consen 164 IMSKQYG-NEDFLTKLVAKACVSILPL---MS--FNVD-NIRVCKILGGGLEDSCVVCGMVFKRDPEG---EVKSAKDAR 233 (537)
T ss_pred HHHhhcc-hHHHHHHHHHHHHHhhccc---cc--cccc-ceEEEEEecCCcccceeeEEEEeccccCC---cccccccce
Confidence 8888654 5789999999999999873 32 5554 69999999999999999999999997654 247788999
Q ss_pred EEEEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCCh
Q 008712 238 IILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 317 (557)
Q Consensus 238 Ill~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~ 317 (557)
|.+++|+++...++++.++.+++++++..|.+.|+..++..++.|...|+++|++.+.+++++|+||++.+|++++--++
T Consensus 234 vAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk 313 (537)
T KOG0362|consen 234 VAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSK 313 (537)
T ss_pred eEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEec-CCCCeEEEEEccCCHHHHHHHHHHHHHHHH
Q 008712 318 TDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDC-KDPKACTVLLRGASKDLLNEVERNLQDAMS 396 (557)
Q Consensus 318 ~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~-~~~~~~TIll~G~t~~~l~e~~~~l~dal~ 396 (557)
.||.|+|+..||++++++..+.+..+|+ |++|...++|+.+++.|... ..++++|++|||+++..+|+.||+++|+++
T Consensus 314 ~eLrrlcrtvGA~~l~rl~~P~~~~lG~-~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~ 392 (537)
T KOG0362|consen 314 FDLRRLCRTVGATALPRLFPPAPEELGY-CDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVN 392 (537)
T ss_pred hhHHHHHHHcCCccchhccCCCCccccc-cceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHH
Confidence 9999999999999999999999999999 99999999999999888764 456899999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 008712 397 VARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENA 476 (557)
Q Consensus 397 ~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~ 476 (557)
+.+...++++++||+|++|++|+..|.+++...++..|++++.|++||+.+|++|++|+|++..+++++|...|..+ .
T Consensus 393 tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g--~ 470 (537)
T KOG0362|consen 393 TYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGG--K 470 (537)
T ss_pred HhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999844 4
Q ss_pred eeeEeCCCC-ccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCcc
Q 008712 477 WIGIDGNTG-AISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 477 ~~Gid~~~~-~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 528 (557)
+.|+|+... ...|+.++||||-+.+|.++++.|+|+|+++|++|+||+.++.
T Consensus 471 ~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~a 523 (537)
T KOG0362|consen 471 NLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKA 523 (537)
T ss_pred cceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEeccc
Confidence 578887766 5899999999999999999999999999999999999998766
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-81 Score=612.24 Aligned_cols=495 Identities=28% Similarity=0.529 Sum_probs=471.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHHHHHHhhhccccCChhHHH
Q 008712 18 TKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVI 97 (557)
Q Consensus 18 ~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 97 (557)
..+...|+.++..+.+++++.+||+|..||++++.|++.+|+||.+.+++|+++||-+-++..++..|++..||||||+|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Q 008712 98 VLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDA 177 (557)
Q Consensus 98 iLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~li~~a 177 (557)
+|+++|+++|..++..|+||..|+.||+.|.+.++++|++.+.+++ ++.|..+++|++++|+...-.+.+++++++|
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~---~~~L~~va~tsl~Tkv~~~la~~lt~~vv~a 172 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD---RETLKDVARTSLRTKVHAELADVLTPIVVDS 172 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh---HHHHHHHHHHhhcCcccHHHHhHhHHHHHhh
Confidence 9999999999999999999999999999999999999998777775 7899999999999999888889999999999
Q ss_pred HhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecCCccccccccceEE
Q 008712 178 TTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAE 257 (557)
Q Consensus 178 ~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~Le~~k~~~~~~~~ 257 (557)
+..+.. ...++|+. ++.|.++...+..|+.+++|++++++..|| .||++.+|++||++|-+|||+|++.++.+-
T Consensus 173 Vl~i~~----~~~~idl~-mveim~mq~~s~~dT~~v~glvLdhg~rHp-dmp~~~e~a~iL~~NvSLEYEK~Einsgff 246 (520)
T KOG0359|consen 173 VLCIRR----QEEPIDLF-MVEIMEMQHKSLHDTSLVQGLVLDHGARHP-DMPRRVEDAYILICNVSLEYEKPEINSGFF 246 (520)
T ss_pred heeecc----CCCCcchh-HHHhhhhccCchhhhHHhhhhhccCCCCCc-ccccchhceEEEEeeccccccccccccchh
Confidence 998873 22457776 799999888898999999999999999999 999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCC----cEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCCeecc
Q 008712 258 LVKEEDWEVLLKMEEEYIENLCMQILKFKP----DLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGAVIVN 333 (557)
Q Consensus 258 i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~----~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~~ii~ 333 (557)
+++.+|.+.+...|++++.+.+++|++.+. -+||.+++|||..++.|++.||++++|.++..|||+..+||+..++
T Consensus 247 Ysta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~n 326 (520)
T KOG0359|consen 247 YSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVN 326 (520)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceec
Confidence 999999999999999999999999987653 4789999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Q 008712 334 RPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGA 413 (557)
Q Consensus 334 ~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~ 413 (557)
+++||+++.+|+ |+.+++.++|+++|+|+++|++++.|||+++||+.+.+.+.|++++|++++++++++++.++||+|+
T Consensus 327 svddLtp~~LG~-aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga 405 (520)
T KOG0359|consen 327 SVDDLTPDYLGY-AGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGA 405 (520)
T ss_pred ccccCChhhccc-cceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCcccccccc
Q 008712 414 TELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKER 493 (557)
Q Consensus 414 ~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~ 493 (557)
+|..++.+|+...++.+++.++++++|++||..+|++|++|+|+|..+.+.+|...|..+ .+|+|+.+|+-++....
T Consensus 406 ~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~---~~g~dl~~g~~~~~~~~ 482 (520)
T KOG0359|consen 406 FEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT---LRGLDLFRGEECDPSRK 482 (520)
T ss_pred HHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh---hcccccccCCccchhhc
Confidence 999999999988888899999999999999999999999999999999999999888654 45999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhHhhcC
Q 008712 494 KIWDAYNVKAQTFKTAIEAACMLLRIDDIVSG 525 (557)
Q Consensus 494 gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~ 525 (557)
||||.+.||++.|..+.-+|+.||-+|+++..
T Consensus 483 gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA 514 (520)
T KOG0359|consen 483 GIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA 514 (520)
T ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999965
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-67 Score=504.24 Aligned_cols=386 Identities=38% Similarity=0.587 Sum_probs=361.5
Q ss_pred CCCccccccc--ccccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccChHHHHHH
Q 008712 2 HSPVLVLKDS--LKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMI 79 (557)
Q Consensus 2 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~ 79 (557)
++|..+++|+ .+...|.++.++++.+..++++++++|+||+|++|+++.+.|++.+|||| .|++++++.
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv 79 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV 79 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence 4677666654 35678999999999999999999999999999999999999999999999 689999999
Q ss_pred HHHHhhhccccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhh
Q 008712 80 ELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIG 159 (557)
Q Consensus 80 ~~~~~~~~~~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~ 159 (557)
..+..|+.++|||||.+++|++++++++.+++.+|+||..|..||..+.+.+++.|++++.+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999998888777765443221
Q ss_pred cccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEE
Q 008712 160 TKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRII 239 (557)
Q Consensus 160 sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIl 239 (557)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhH
Q 008712 240 LLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 240 l~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~ 319 (557)
+.++++++++.|+++++|+|++||++.++|.+|+..+++||.-.+
T Consensus 144 -----------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpE 188 (400)
T KOG0357|consen 144 -----------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPE 188 (400)
T ss_pred -----------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcc
Confidence 224778999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEEC--CeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHH
Q 008712 320 NNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (557)
Q Consensus 320 l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig--~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~ 397 (557)
+|.|+..||++|++++++|+++.||+ |+.|.+..|| ++|+..+++|++++.+||.+||.+..+++|.||++|||||+
T Consensus 189 iEliAiaT~grIVprF~eL~~~kLG~-aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCv 267 (400)
T KOG0357|consen 189 IELIAIATGGRIVPRFSELTAEKLGF-AGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCV 267 (400)
T ss_pred eEEEEeecCCeeeccHhhhCHhhccc-cceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHH
Confidence 99999999999999999999999999 9999999997 58999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCce
Q 008712 398 ARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAW 477 (557)
Q Consensus 398 ~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~ 477 (557)
+|+.+++.++|+|||++|+.||-.+.+-+.++++.+|+++++|++||++||..|++|+|++|++.++.+++.+.....+.
T Consensus 268 irnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~ 347 (400)
T KOG0357|consen 268 IRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPA 347 (400)
T ss_pred HHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877655689
Q ss_pred eeEeCCCCccccccccccccchHHHHHHHHHHHHHHHHHHhhhHhhcCCcc
Q 008712 478 IGIDGNTGAISDMKERKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKK 528 (557)
Q Consensus 478 ~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~iD~ii~~~~~ 528 (557)
+|+|+.-..-.||.+.+++|++..|++.+..|++++.|+|+||+|+.+..+
T Consensus 348 lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 348 LGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGES 398 (400)
T ss_pred cCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCCC
Confidence 999999888999999999999999999999999999999999999976543
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-60 Score=482.67 Aligned_cols=460 Identities=23% Similarity=0.321 Sum_probs=404.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhcCCCCCCceeeecCCCCEEEeccHHHHhhcccccCh----HHHHHHHHHHhhhcc
Q 008712 13 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHP----AAKSMIELSRTQDEE 88 (557)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP----~a~ll~~~~~~~~~~ 88 (557)
+..+|.++|...++++..|+++|.+|+||+||+++|.+..|.|.|||||.|+++++.+.++ +|+++++.+.+.++.
T Consensus 18 ~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~ 97 (550)
T KOG0356|consen 18 DIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEE 97 (550)
T ss_pred ccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCc
Confidence 5679999999999999999999999999999999999999999999999999999998765 899999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHhhcccccchhH
Q 008712 89 VGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMPIDTNDRATMLGLVKSCIGTKFTSQFGD 168 (557)
Q Consensus 89 ~GDGttt~viLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~ia~t~l~sK~~~~~~~ 168 (557)
.||||||+++|++++..++.+-+.+|.+|..+.+|+..+.+.+.+.|.+++++++. .+++.++|..+ .+++.
T Consensus 98 agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt--~eeIaqVAtiS------AngD~ 169 (550)
T KOG0356|consen 98 AGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTT--PEEIAQVATIS------ANGDK 169 (550)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHhhh------cCCcH
Confidence 99999999999999999999999999999999999999999999999999999986 78899999866 56789
Q ss_pred HHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCC-CCcEEEEeEEEeccccCCC------CCccccCCceEEEE
Q 008712 169 LIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQL-EDSRVLKGVMFNKDVVAPG------KMRRKIVNPRIILL 241 (557)
Q Consensus 169 ~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~-~ds~li~Giv~~~~~~~~~------~~~~~~~n~kIll~ 241 (557)
++++++.+|+.++++ +|. |.|+. |... ++.++++|+-|+++|.+|. ....+++||++++.
T Consensus 170 ~ig~li~~a~~kvG~---~GV--------Itv~~--gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~ 236 (550)
T KOG0356|consen 170 EIGNLISDAMKKVGR---KGV--------ITVKD--GKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLS 236 (550)
T ss_pred HHHHHHHHHHHHhCc---CCe--------EEeec--CCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhh
Confidence 999999999999997 564 77754 6666 4678999999999998762 34568999999998
Q ss_pred ecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCC-----------e
Q 008712 242 DSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGV-----------S 310 (557)
Q Consensus 242 ~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I-----------~ 310 (557)
+.++ ++.+++-+ .++.-.....++++++.+++.++|..|..|+. .
T Consensus 237 ~kki-------------~~v~~ivp-----------~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKap 292 (550)
T KOG0356|consen 237 EKKI-------------SSVQSIVP-----------ALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAP 292 (550)
T ss_pred hhhh-------------hHHHHHhH-----------HHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecC
Confidence 8774 44445443 45556667788999999999999999988843 2
Q ss_pred EEecCChhHHHHHHHHhCCeecc------CCCCCCCCCcCCccceEEEEEEC----------------------------
Q 008712 311 AIRRLRKTDNNRIAKACGAVIVN------RPDELQESDVGTGAGLFEVKKIG---------------------------- 356 (557)
Q Consensus 311 ~i~~v~~~~l~~i~~~tG~~ii~------~~~~l~~~~lG~~~~~v~~~~ig---------------------------- 356 (557)
.|++-+++.+.+++.+||+.++. ++++...+++|. +..+.+.+-.
T Consensus 293 gfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~-~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~ 371 (550)
T KOG0356|consen 293 GFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGE-VGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETT 371 (550)
T ss_pred CCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCc-ceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 35788889999999999998886 455677788998 8888776520
Q ss_pred --------CeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhcc
Q 008712 357 --------DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (557)
Q Consensus 357 --------~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~ 428 (557)
++|...|. +.+++|.++|.++.+++|++.+++|||+++++++++| +|||||++.++|+..|.+....
T Consensus 372 ~~ye~ekl~er~a~ls----~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~ 446 (550)
T KOG0356|consen 372 SDYEKEKLNERLAKLS----GGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKAT 446 (550)
T ss_pred hhhhHhHHHHHHHHhc----CCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccc
Confidence 12222332 5799999999999999999999999999999999999 9999999999999999987653
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeeEeCCCCccccccccccccchHHHHHHHHH
Q 008712 429 IEGIEKWPYEAAAIAFEAIPRTLAQNCGINVIRTMTALQGKHANGENAWIGIDGNTGAISDMKERKIWDAYNVKAQTFKT 508 (557)
Q Consensus 429 ~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~ 508 (557)
.+..++.+++++.+||..|..+++.|||.|+..++.+++. ..+|||..+|+++||++.||+||+.|.+.+|..
T Consensus 447 ~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~ 519 (550)
T KOG0356|consen 447 NNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTD 519 (550)
T ss_pred cchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhh
Confidence 4456778899999999999999999999999999999982 269999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhcCCccCC
Q 008712 509 AIEAACMLLRIDDIVSGIKKKQ 530 (557)
Q Consensus 509 A~e~a~~lL~iD~ii~~~~~~~ 530 (557)
|..+|++|++++.+|...|++.
T Consensus 520 a~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 520 AAGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred hhHHHHHHhhheeEEEeccccc
Confidence 9999999999999999998866
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=1.6e-39 Score=320.81 Aligned_cols=235 Identities=32% Similarity=0.583 Sum_probs=216.0
Q ss_pred cchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEec
Q 008712 164 SQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDS 243 (557)
Q Consensus 164 ~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~ 243 (557)
+.|.++|++++++|+..+.++..++ ..+|+.++|+|++++|+++.||++++|+++++++.++ .||++++||||+++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~-~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~-~m~~~i~n~kIlll~~ 94 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAG-DDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHK-RMPSKIKNPRILLLQG 94 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccC-CccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCc-cCCcccCCCcEEEEee
Confidence 4588999999999999986432111 3578766799999999999999999999999999998 8999999999999999
Q ss_pred CCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHH
Q 008712 244 PLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRI 323 (557)
Q Consensus 244 ~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i 323 (557)
+|++++++. ++++++++++.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++.+|+||
T Consensus 95 ~Le~~~~~~-------~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rI 167 (261)
T cd03334 95 PLEYQRVEN-------KLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERI 167 (261)
T ss_pred eeccccccC-------CHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHH
Confidence 999988763 4578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeeccCC-CCCCCCCcCCccceEEEEEECC-----eEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHH
Q 008712 324 AKACGAVIVNRP-DELQESDVGTGAGLFEVKKIGD-----EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSV 397 (557)
Q Consensus 324 ~~~tG~~ii~~~-~~l~~~~lG~~~~~v~~~~ig~-----~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~ 397 (557)
+++|||.+++++ ++++++.+|+ |+.|++.++|+ ++|++|++|..++++||+|||+|+..++|+||+++||+++
T Consensus 168 a~~tGa~ii~~i~~~~~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 168 SRCTGADIISSMDDLLTSPKLGT-CESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHhCCEEecChhhhcCcccCcC-cceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999995 5889999999 99999999996 6999999999899999999999999999999999999999
Q ss_pred HHHHHhCCCcc
Q 008712 398 ARNIIKNPKLV 408 (557)
Q Consensus 398 ~~~~~~~g~vv 408 (557)
++++..++.++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99998887544
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=3.6e-35 Score=282.53 Aligned_cols=208 Identities=46% Similarity=0.765 Sum_probs=195.2
Q ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCC
Q 008712 148 ATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPG 227 (557)
Q Consensus 148 ~~l~~ia~t~l~sK~~~~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~ 227 (557)
+.|.++++|+++||+ +.|.+.+++++++|+..++++. + .++. ++|+|++++|+++.+|++++|++|++++.++
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~--~--~~~~-~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~- 74 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDN--R--MDDL-GVIKVEKIPGGSLEDSELVVGVVFDKGYASP- 74 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccC--C--CCch-HHEEEEEecCcChhhceeEeeEEEeccccCC-
Confidence 468999999999999 8999999999999999998531 1 2333 4799999999999999999999999999998
Q ss_pred CCccccCCceEEEEecCCccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc
Q 008712 228 KMRRKIVNPRIILLDSPLEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKA 307 (557)
Q Consensus 228 ~~~~~~~n~kIll~~~~Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~ 307 (557)
.|+++++||+|++++++|++ +|+++++|++.++++|.++
T Consensus 75 ~m~~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~ 113 (209)
T cd03333 75 YMPKRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKA 113 (209)
T ss_pred CCCeEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHC
Confidence 89999999999999999975 9999999999999999999
Q ss_pred CCeEEecCChhHHHHHHHHhCCeeccCCCCCCCCCcCCccceEEEEEECCeEEEEEEecCCCCeEEEEEccCCHHHHHHH
Q 008712 308 GVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEV 387 (557)
Q Consensus 308 ~I~~i~~v~~~~l~~i~~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~ 387 (557)
||++++++++++|+||+++||+++++++++++++.+|+ |+.+++.++|+++|++|++|..+..|||+|||+|+.+++|+
T Consensus 114 ~I~~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~-~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~ 192 (209)
T cd03333 114 GIMAVRRVKKEDLERIARATGATIVSSLEDLTPEDLGT-AELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEV 192 (209)
T ss_pred CCEEEEeCCHHHHHHHHHHHCCEEecccccCChhhcee-eeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 008712 388 ERNLQDAMSVARNIIKN 404 (557)
Q Consensus 388 ~~~l~dal~~~~~~~~~ 404 (557)
||+++||++++++++++
T Consensus 193 kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 193 KRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.88 E-value=9.4e-22 Score=219.96 Aligned_cols=239 Identities=33% Similarity=0.535 Sum_probs=213.2
Q ss_pred chhHHHHHHHHHHHhhcccccCCCccccCcccceEEEEecCCCCCCcEEEEeEEEeccccCCCCCccccCCceEEEEecC
Q 008712 165 QFGDLIADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSP 244 (557)
Q Consensus 165 ~~~~~ls~li~~a~~~v~~~~~~g~~~~d~~~~I~I~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~n~kIll~~~~ 244 (557)
.|.+.+..++.+|...+.++...| ..+|+.++++|++++||...+|+++.|+++.+..+++ .|..++++|+|+++.++
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~-~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k-~M~~~~e~prilll~g~ 409 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSG-GLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHK-RMATKYENPRILLLGGP 409 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccC-CCcCcccceEEEEecCCCcccceeeeEEEeecchhhh-hhhhhccCCceEEEecc
Confidence 588899999999999998765323 4678888999999999999999999999999999998 99999999999999999
Q ss_pred CccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHH
Q 008712 245 LEYKKGENQTNAELVKEEDWEVLLKMEEEYIENLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIA 324 (557)
Q Consensus 245 Le~~k~~~~~~~~i~~~~~l~~~~~~E~~~i~~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~ 324 (557)
|+|++-..+ ...++.++.+|.++++..+.+|...++++++++++|++.|+++|...+|.++-++++.-|+||+
T Consensus 410 leyqrisn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIs 482 (1598)
T KOG0230|consen 410 LEYQRISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERIS 482 (1598)
T ss_pred hhhhhhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHH
Confidence 999864432 2246677777999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeeccCCCCCCCCCcCCccceEEEEEEC-----CeEEEEEEecCCCCeEEEEEccCCHHHHHHHHHHHHHHHHHHH
Q 008712 325 KACGAVIVNRPDELQESDVGTGAGLFEVKKIG-----DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVAR 399 (557)
Q Consensus 325 ~~tG~~ii~~~~~l~~~~lG~~~~~v~~~~ig-----~~~~~~l~~~~~~~~~TIll~G~t~~~l~e~~~~l~dal~~~~ 399 (557)
++|||.|+++++.++...+|+ |+.|++.++- .+.+++|++|+....|||+|||....++++.|+.++-++.++.
T Consensus 483 R~tga~I~~siDslt~~klg~-C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay 561 (1598)
T KOG0230|consen 483 RCTGADIVPSVDSLTSQKLGY-CELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAY 561 (1598)
T ss_pred HHhcCceecchhhhhccccCC-CccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999887764 4578999999999999999999999999999999999999988
Q ss_pred HHHhCCCcccCCCc
Q 008712 400 NIIKNPKLVPGGGA 413 (557)
Q Consensus 400 ~~~~~g~vvpGGG~ 413 (557)
+..-+-.++.-=|+
T Consensus 562 ~l~LE~SflaDe~a 575 (1598)
T KOG0230|consen 562 HLALETSFLADEGA 575 (1598)
T ss_pred HHHHhhhhhhccCC
Confidence 87655545544444
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=53.83 E-value=44 Score=26.78 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=30.5
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEec
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRR 314 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~ 314 (557)
+.+.+...++++|++. .+.+.+...|..+||.++..
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEc
Confidence 3345666899999885 79999999999999999987
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=50.51 E-value=69 Score=27.74 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhHHHHHHHHhCC
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~l~~i~~~tG~ 329 (557)
+.+.|++.|+++|++. .+.+.+.++|..+||-++.-.+..-=+.|-....+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4577889999999986 89999999999999988876653322334333333
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=47.88 E-value=56 Score=26.70 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~ 316 (557)
..+.|...++++|++. ++.+.+.+.|...||.++....
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 4455666899999995 7999999999999999987665
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=40.01 E-value=84 Score=25.54 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCC
Q 008712 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLR 316 (557)
Q Consensus 279 l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~ 316 (557)
.+.+...++++|++. ++.+.++..|.+.||.++....
T Consensus 54 ~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 345667899999997 5999999999999999987665
No 50
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=38.16 E-value=1.5e+02 Score=23.93 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCcEEEeCCCCCHHHHH----HHHHcCCeEEecCChhHHHHHHHHhCC
Q 008712 275 IENLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIAKACGA 329 (557)
Q Consensus 275 i~~~l~~i~~~~~~lIi~~~~i~~~al~----~L~~~~I~~i~~v~~~~l~~i~~~tG~ 329 (557)
+++-++.+.+-.+.+|+.++++++.... ++.+++|.++.--++.+| -++||.
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~L---GkAcgi 73 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHAL---GKHVGI 73 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 3456677777778999999999987665 566789988776666654 455554
No 51
>PRK07283 hypothetical protein; Provisional
Probab=35.43 E-value=1.5e+02 Score=24.46 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=36.8
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHH----HHHHHcCCeEEecCChhHHHHHHHHhCC
Q 008712 278 LCMQILKFKPDLVITEKGLSDLAC----HYLSKAGVSAIRRLRKTDNNRIAKACGA 329 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al----~~L~~~~I~~i~~v~~~~l~~i~~~tG~ 329 (557)
..+.+.+-.+.+||.+.+.++... +.+..++|.++....++ .|..++|-
T Consensus 26 v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~---eLG~a~Gk 78 (98)
T PRK07283 26 VVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL---ELSAAVGK 78 (98)
T ss_pred HHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH---HHHHHhCC
Confidence 445666667899999999999888 55566799988777664 46677774
No 52
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=30.25 E-value=77 Score=30.91 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhH
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~ 319 (557)
++.+....|+++|++.......+.++..+.||..++.++...
T Consensus 184 mv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 184 MVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 778899999999999999999999999999999998777543
No 53
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=28.47 E-value=2.4e+02 Score=22.52 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=36.1
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHH----HHHcCCeEEecCChhHHHHHHHHhCCe
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHY----LSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~----L~~~~I~~i~~v~~~~l~~i~~~tG~~ 330 (557)
.++.+.+-.+.+||.+.+.++....- +..++|.+...-++. .|.+++|..
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~---eLG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMK---ELGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHH---HHHHHHCCc
Confidence 45667777889999999999877664 456789886655554 466777753
No 54
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=27.55 E-value=3.7e+02 Score=24.32 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHhcCC
Q 008712 378 GASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGI 457 (557)
Q Consensus 378 G~t~~~l~e~~~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~ 457 (557)
.+.+..-++++.-++.-..-++--.+-|-++|-. ...+.++ ..++++...|+++|-+|.+++|+
T Consensus 60 ~p~~m~p~dRK~w~qsE~eRlk~e~e~g~Lipa~--------eV~~~~s--------~~~Kav~q~LetlPD~LERd~gL 123 (152)
T PF07278_consen 60 DPDDMTPKDRKAWWQSENERLKFEKETGQLIPAE--------EVRREMS--------EMAKAVVQVLETLPDILERDAGL 123 (152)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHcccCcHH--------HHHHHHH--------HHHHHHHHHHHHhhHHHHhcCCC
Confidence 3444445577777777777787777788777644 2222222 45678999999999999999999
Q ss_pred CHH
Q 008712 458 NVI 460 (557)
Q Consensus 458 d~~ 460 (557)
.+.
T Consensus 124 ~p~ 126 (152)
T PF07278_consen 124 PPE 126 (152)
T ss_pred CHH
Confidence 983
No 55
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=27.29 E-value=91 Score=30.95 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChh
Q 008712 277 NLCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKT 318 (557)
Q Consensus 277 ~~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~ 318 (557)
+++.+.+..|+++|++...-...+.++..+.||..++.++..
T Consensus 212 emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 212 EMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 377889999999999999999999999999999998877654
No 56
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=26.35 E-value=2e+02 Score=26.23 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=34.5
Q ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEE--ecCC-h----hHHHHHHHHhCC
Q 008712 280 MQILKFKPDLVITEKGLSDLACHYLSKAGVSAI--RRLR-K----TDNNRIAKACGA 329 (557)
Q Consensus 280 ~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i--~~v~-~----~~l~~i~~~tG~ 329 (557)
+.|.+.+++||+......+...+.|.+.+|.++ .... . +.++.++.++|-
T Consensus 54 E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 54 EKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 567888999999876666667788999998543 2221 2 346667777764
No 57
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=26.23 E-value=57 Score=34.80 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCchHHHHHHHHHhhhcc
Q 008712 389 RNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSS 428 (557)
Q Consensus 389 ~~l~dal~~~~~~~~~g~vvpGGG~~E~~l~~~L~~~~~~ 428 (557)
+.+.+|+..+|++ +.|-+|.|||+-+-.+...|+.+++.
T Consensus 217 ~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~E~ 255 (617)
T COG3962 217 RELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFAET 255 (617)
T ss_pred HHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHHHh
Confidence 5677888888887 55779999999999988888888764
No 58
>PRK06683 hypothetical protein; Provisional
Probab=26.09 E-value=2.7e+02 Score=22.17 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=37.1
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHH----HHHcCCeEEecCChhHHHHHHHHhCCe
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHY----LSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~----L~~~~I~~i~~v~~~~l~~i~~~tG~~ 330 (557)
.++.|.+-.+.+||.+.+.++...+- +..++|.++..-.+. .|..++|..
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~---eLG~A~G~~ 72 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVR---KLGKVAGIQ 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCCc
Confidence 45666777899999999999877664 567799887666554 467777764
No 59
>PRK07714 hypothetical protein; Provisional
Probab=25.63 E-value=2.9e+02 Score=22.77 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHH----HHcCCeEEecCChhHHHHHHHHhCC
Q 008712 277 NLCMQILKFKPDLVITEKGLSDLACHYL----SKAGVSAIRRLRKTDNNRIAKACGA 329 (557)
Q Consensus 277 ~~l~~i~~~~~~lIi~~~~i~~~al~~L----~~~~I~~i~~v~~~~l~~i~~~tG~ 329 (557)
+..+.+.+-.+.+||.+.+.++....-+ ..++|.++...++++ |..++|-
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~e---LG~a~Gk 78 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQ---LGHAIGK 78 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHH---HHHHhCC
Confidence 3455666677899999999988766544 556888887766644 5666664
No 60
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=25.41 E-value=1.7e+02 Score=29.07 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=39.2
Q ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEe-cC-C----hhHHHHHHHHhCCe
Q 008712 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIR-RL-R----KTDNNRIAKACGAV 330 (557)
Q Consensus 279 l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~-~v-~----~~~l~~i~~~tG~~ 330 (557)
++.|...+++|||.....++...+.|.+.+|.++- .. . .+.++.++.++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 36788889999999888888888899999986642 11 2 24578888888853
No 61
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.14 E-value=2.1e+02 Score=27.43 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=36.8
Q ss_pred HHHHHhcCCcEEEeCCCCCHH-HHHHHHHcCCeEEecC--C----hhHHHHHHHHhCCe
Q 008712 279 CMQILKFKPDLVITEKGLSDL-ACHYLSKAGVSAIRRL--R----KTDNNRIAKACGAV 330 (557)
Q Consensus 279 l~~i~~~~~~lIi~~~~i~~~-al~~L~~~~I~~i~~v--~----~~~l~~i~~~tG~~ 330 (557)
+|.|...+++|||.....++. ..+.|.+.+|.++-.. . .+.++.|+.++|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 367888899999997655454 4888989998654321 2 34578888888864
No 62
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=25.12 E-value=2.7e+02 Score=24.08 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCcEEEeCCCCCHH-H----HHHHHHcCCeEEecCChhH
Q 008712 277 NLCMQILKFKPDLVITEKGLSDL-A----CHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 277 ~~l~~i~~~~~~lIi~~~~i~~~-a----l~~L~~~~I~~i~~v~~~~ 319 (557)
+.++.+.+-.+.+||.+.++++. . ..++.+++|..+..-++++
T Consensus 37 ~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~e 84 (122)
T PRK04175 37 ETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKD 84 (122)
T ss_pred HHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 44555555567788888888663 2 2234566776655555543
No 63
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.51 E-value=3.1e+02 Score=21.76 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHH----HHHHcCCeEEecCChhHHHHHHHHhCCe
Q 008712 277 NLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRLRKTDNNRIAKACGAV 330 (557)
Q Consensus 277 ~~l~~i~~~~~~lIi~~~~i~~~al~----~L~~~~I~~i~~v~~~~l~~i~~~tG~~ 330 (557)
+.++.|.+-.+.+|+.+.+.++.... ++..++|.++..-++. .|..++|-.
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~---eLG~a~G~~ 72 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMK---KLGKACGIE 72 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHH---HHHHHHCCC
Confidence 35566777788999999999987654 4577899887666654 466777753
No 64
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=24.33 E-value=2.7e+02 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCcEEEeCCCCCHH-H----HHHHHHcCCeEEecCChhH
Q 008712 277 NLCMQILKFKPDLVITEKGLSDL-A----CHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 277 ~~l~~i~~~~~~lIi~~~~i~~~-a----l~~L~~~~I~~i~~v~~~~ 319 (557)
+.++.|.+-.+.+|+.+.++++. . .+++...+|..+..-++++
T Consensus 33 ~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~e 80 (117)
T TIGR03677 33 EVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKED 80 (117)
T ss_pred HHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHH
Confidence 34455555567788888888653 2 3345667777666555544
No 65
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=24.30 E-value=1e+02 Score=30.52 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=37.5
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCChhH
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRKTD 319 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~~~ 319 (557)
++++.+..|+++|++-......+.+...+.||..+..++...
T Consensus 213 mV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~ 254 (266)
T COG1526 213 MVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGR 254 (266)
T ss_pred HHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCc
Confidence 788899999999999999999999999999999988776543
No 66
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=23.46 E-value=2e+02 Score=29.83 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=37.2
Q ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecC---Ch----hHHHHHHHHhCC
Q 008712 279 CMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRL---RK----TDNNRIAKACGA 329 (557)
Q Consensus 279 l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v---~~----~~l~~i~~~tG~ 329 (557)
+|.|...+++|||......+...+.|.+.||.++..- .. +.++.+.+++|-
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4678889999999876656667888999999875432 21 445677777775
No 67
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=22.99 E-value=45 Score=33.11 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCcccCCCc
Q 008712 394 AMSVARNIIKNPKLVPGGGA 413 (557)
Q Consensus 394 al~~~~~~~~~g~vvpGGG~ 413 (557)
|++++|.+.+.|.++|||-.
T Consensus 84 Al~iir~Aee~GkL~~gg~v 103 (391)
T KOG1481|consen 84 ALYIIRTAEEKGKLVRGGTV 103 (391)
T ss_pred HHHHHHHHHHcCCcccCceE
Confidence 89999999999999999733
No 68
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=22.49 E-value=2.9e+02 Score=23.28 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCcEEEeCCCCCHHHH----HHHHHcCCeEEec-CChhHHHHHHHHhCCe
Q 008712 276 ENLCMQILKFKPDLVITEKGLSDLAC----HYLSKAGVSAIRR-LRKTDNNRIAKACGAV 330 (557)
Q Consensus 276 ~~~l~~i~~~~~~lIi~~~~i~~~al----~~L~~~~I~~i~~-v~~~~l~~i~~~tG~~ 330 (557)
++.++.|.+-.+.+||++.+.++... +++..++|.++.. -.++ .|..++|-.
T Consensus 31 ~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~---eLG~A~Gk~ 87 (108)
T PTZ00106 31 KSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNN---DLGTACGRH 87 (108)
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHH---HHHHHhCCc
Confidence 34556677778899999999988754 4566779988764 4454 467777743
No 69
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=22.45 E-value=1.1e+02 Score=29.80 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCeEEecCCh
Q 008712 278 LCMQILKFKPDLVITEKGLSDLACHYLSKAGVSAIRRLRK 317 (557)
Q Consensus 278 ~l~~i~~~~~~lIi~~~~i~~~al~~L~~~~I~~i~~v~~ 317 (557)
++.+....|+++|++.......+.++-.+.||..++.++.
T Consensus 184 mv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 184 MVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 7788888999999999999999999999999988876654
No 70
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=21.79 E-value=1e+02 Score=26.83 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEeCCCC--CHHHHHHHHHcCCeEEec
Q 008712 272 EEYIENLCMQILKFKPDLVITEKGL--SDLACHYLSKAGVSAIRR 314 (557)
Q Consensus 272 ~~~i~~~l~~i~~~~~~lIi~~~~i--~~~al~~L~~~~I~~i~~ 314 (557)
.+..++.++++...++++||.+.+. ++..++.+.++++.+++-
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 3445667888888999988887766 688889999999988863
No 71
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=21.42 E-value=3.8e+02 Score=22.07 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHH----HHHHcCCeEEecC-ChhHHHHHHHHhCC
Q 008712 277 NLCMQILKFKPDLVITEKGLSDLACH----YLSKAGVSAIRRL-RKTDNNRIAKACGA 329 (557)
Q Consensus 277 ~~l~~i~~~~~~lIi~~~~i~~~al~----~L~~~~I~~i~~v-~~~~l~~i~~~tG~ 329 (557)
+.++.+.+..+.+|+.+.+.++.... ++..++|.++... ++++ |.+++|-
T Consensus 23 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~e---LG~a~Gk 77 (99)
T PRK01018 23 RTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVE---LGTLCGK 77 (99)
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHH---HHHHhCC
Confidence 35566777778999999999876655 4567799887764 5544 6677774
No 72
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=21.37 E-value=95 Score=30.30 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=24.4
Q ss_pred EEEEEccCCHHHHHHHHHHHHHHHHHHHH
Q 008712 372 CTVLLRGASKDLLNEVERNLQDAMSVARN 400 (557)
Q Consensus 372 ~TIll~G~t~~~l~e~~~~l~dal~~~~~ 400 (557)
.||+|+| ++..+++.++.++|-.++.+-
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhee
Confidence 3899999 778899999999999998753
Done!