BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008714
(556 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 28/388 (7%)
Query: 124 GLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182
G+K ++E + +GGTC+ GC+PSKALL + R+ E + LG +V D
Sbjct: 24 GMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK----GLLGAKVKGVELDLPA 79
Query: 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG-TDNIVTAKDIIIATGS 241
+ H + + + K G+ G L +KV T + A+ I+IATGS
Sbjct: 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGS 139
Query: 242 VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301
P +P +VD + V+TS AL VP + +VG G IGLE V+ LG+EV +E +
Sbjct: 140 APLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYM 199
Query: 302 DQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361
D+++P D E+ + A+RV + + TGV T + P G V + E +
Sbjct: 200 DRILPTMDLEVSRAAERVF-KKQGLTIRTGVRVTAVVPEAKGARVEL--------EGGEV 250
Query: 362 LEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDAN 420
LE D L+A GR P+T GL LEN + T +RG +PVDE +R VPH+Y IGD
Sbjct: 251 LEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLR------TRVPHIYAIGDVV 304
Query: 421 GKMMLAHAASAQGISVVEQ-VTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKE 479
MLAH AS +GI+ VE V G HV ++ +IP+ +THPEI+ VG TE E+ + +
Sbjct: 305 RGPMLAHKASEEGIAAVEHMVRGFGHV-DYQAIPSVVYTHPEIAAVGYTE----EELKAQ 359
Query: 480 GFEVSVAKTSFKANTKALAENEGEGLAK 507
G V K + A+ +A A E EG K
Sbjct: 360 GIPYKVGKFPYSASGRARAMGETEGFIK 387
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 221/432 (51%), Gaps = 34/432 (7%)
Query: 124 GLKTAIIE------GDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176
GLKTA IE G V +GGTC+N GC+PSKALL S + E ++ K G++
Sbjct: 26 GLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKYHE--AKEAFKVHGIEAKGV 83
Query: 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTA 232
D + N+ + + KA GV G G +L ++V+ G ++ A
Sbjct: 84 TIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEA 143
Query: 233 KDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALG 292
+++IIA+GS P + ++ S AL+ + VP + ++G+G IGLE V+ LG
Sbjct: 144 ENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLG 203
Query: 293 SEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELID 352
+EVT +EALD+ +P D +I K A +VL + ++ G T K K VT+ D
Sbjct: 204 AEVTVLEALDKFLPAADEQIAKEALKVL-TKQGLNIRLGARVTASEVKK--KQVTVTFTD 260
Query: 353 AKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVP 411
A E K+T D ++A GR P T L + V + +RGF+ VD+ + VP
Sbjct: 261 A-NGEQKETF--DKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDHCK------TSVP 311
Query: 412 HLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQ 471
++ IGD MLAH AS +G+ V E++ G +N+ IP+ +THPEI+ VG TE
Sbjct: 312 GVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYDLIPSVIYTHPEIAWVGKTE-- 369
Query: 472 AREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERT-NQHSDRPSKPN 530
+ + EG EV+V F A+ +A+A N+ GL K + A ++R H PS
Sbjct: 370 --QTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIAD--AKTDRVLGVHVIGPSAAE 425
Query: 531 LVKKLADVYMTF 542
LV++ A + M F
Sbjct: 426 LVQQGA-IGMEF 436
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/433 (32%), Positives = 220/433 (50%), Gaps = 36/433 (8%)
Query: 124 GLKTAIIEG-------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176
GLKTA+IE +GGTC+N GC+PSKALL S + E + K G+
Sbjct: 26 GLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHE--AHESFKLHGISTGEV 83
Query: 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTA 232
D + + + + + + +KA GV + G G +L +KV+ G+ ++
Sbjct: 84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDT 143
Query: 233 KDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALG 292
+++I+A+GS P VD ++ S AL + VP + ++G+G IGLE V+ LG
Sbjct: 144 ENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLG 203
Query: 293 SEVTFIEALDQLMPGFDPEIGKLAQRVLINP-RKIDYHTGVFATKITPAKDGKPVTIELI 351
+EVT +EA+D+ +P D ++ K AQ++L KI V T++ K VT++ +
Sbjct: 204 AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEV----KNKQVTVKFV 259
Query: 352 DAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLV 410
DA E + + D ++A GR P T L + V + +RGF+ VD D V
Sbjct: 260 DA---EGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD------DYCATSV 310
Query: 411 PHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEP 470
P +Y IGD MLAH AS +G+ V E++ G +N+ IPA +THPEI+ VG TE
Sbjct: 311 PGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTE- 369
Query: 471 QAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERT-NQHSDRPSKP 529
+ + EG ++V F A+ +A+A N+ G K + A ++R H PS
Sbjct: 370 ---QALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIAD--AKTDRVLGVHVIGPSAA 424
Query: 530 NLVKKLADVYMTF 542
LV++ A + M F
Sbjct: 425 ELVQQGA-IAMEF 436
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 198/391 (50%), Gaps = 24/391 (6%)
Query: 124 GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182
G KT IE +GGTC+N GC+PSKALL S E ++H G++V D
Sbjct: 29 GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE--AKHSFANHGVKVSNVEIDLAA 86
Query: 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIA 238
+ + + + + K V + G G + P ++ G + +V K IIIA
Sbjct: 87 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIA 146
Query: 239 TGS-VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TGS V +P G+ +D K +++S AL L +P + ++G+GYIGLE V+ +GSEVT
Sbjct: 147 TGSDVKSLP-GVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTV 205
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKE 357
+E +++P D EI K QR L + + + + + DG +T+E
Sbjct: 206 VEFASEIVPTMDAEIRKQFQRSL-EKQGMKFKLKTKVVGVDTSGDGVKLTVE---PSAGG 261
Query: 358 PKDTLEVDAALIATGRAPFTNGLGLENINVVTQR-GFVPVDERMRVIDANGNLVPHLYCI 416
+ +E D L++ GR PFT+GL L+ I V T + G + V+ER V +Y I
Sbjct: 262 EQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFS------TNVSGVYAI 315
Query: 417 GDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKA 476
GD MLAH A G++ VE + G+ +++ +P +T+PE++ VG TE Q +E
Sbjct: 316 GDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKET- 374
Query: 477 EKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
G E V K F AN++A A + EGL K
Sbjct: 375 ---GVEYRVGKFPFMANSRAKAIDNAEGLVK 402
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 201/389 (51%), Gaps = 29/389 (7%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMK---ALGLQVHAAGYDR 180
GLK +E VGG C+N GC+P+KALL + ++ HH+K GL+ D
Sbjct: 29 GLKVLAVEAGEVGGVCLNVGCIPTKALLHAA------ETLHHLKVAEGFGLKAKPE-LDL 81
Query: 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATG 240
+ + + + K+ + +K GV++L G ++GP++V+ G + AK +I+ATG
Sbjct: 82 KKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERY-GAKSLILATG 140
Query: 241 SVPFVPKGIEVDGKTVITSDHALKLE-FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299
S P KG G+ V S ALK+E +P + ++G G +GLE VY LG+EVT IE
Sbjct: 141 SEPLELKGFPF-GEDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIE 199
Query: 300 ALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPK 359
+ +++P DPE L +R L I T A KDG V +E
Sbjct: 200 YMPEILPQGDPETAALLRRAL-EKEGIRVRTKTKAVGYEKKKDGLHVRLE---PAEGGEG 255
Query: 360 DTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHLYCIGD 418
+ + VD L+A GR P T GLGLE V V +RGF+ V+ RM VP +Y IGD
Sbjct: 256 EEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARME------TSVPGVYAIGD 309
Query: 419 ANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEK 478
A +LAH A +G+ E G+D ++ +P+ +T PE + VGLTE E+A++
Sbjct: 310 AARPPLLAHKAMREGLIAAENAAGKDSAFDY-QVPSVVYTSPEWAGVGLTE----EEAKR 364
Query: 479 EGFEVSVAKTSFKANTKALAENEGEGLAK 507
G++V V K A+ +AL EG+ K
Sbjct: 365 AGYKVKVGKFPLAASGRALTLGGAEGMVK 393
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 203/393 (51%), Gaps = 26/393 (6%)
Query: 124 GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182
G K A++E GGTC+N GC+PSKALL S Q++H ++ALG++V + Q
Sbjct: 48 GXKVAVVEKRSTYGGTCLNVGCIPSKALLHASEXFH--QAQHGLEALGVEVANPKLNLQK 105
Query: 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIA 238
H + + ++ K +D G G +LG KV G + ++ AK+++IA
Sbjct: 106 XXAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIA 165
Query: 239 TGS-VPFVPKGIEV--DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEV 295
TGS V +P G+EV D KT+++S AL LE VP +VG G IGLE V+ LG++V
Sbjct: 166 TGSDVAGIP-GVEVAFDEKTIVSSTGALALEKVPASXIVVGGGVIGLELGSVWARLGAKV 224
Query: 296 TFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKT 355
T +E LD ++ G D E+ K QR L + ID+ G T + DG VT E +
Sbjct: 225 TVVEFLDTILGGXDGEVAKQLQRXL-TKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGG- 282
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINVV-TQRGFVPVDERMRVIDANGNLVPHLY 414
TL+ + LIATGR P T+GLGL VV RG V +D + + +Y
Sbjct: 283 --EATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQ------TSIAGVY 334
Query: 415 CIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQARE 474
IGD LAH A +G++V E + G+ +N+ IP +T PE++ VG TE E
Sbjct: 335 AIGDVVRGPXLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTE----E 390
Query: 475 KAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
+ + G + K F AN +A A + +G K
Sbjct: 391 ELKAAGVAYKIGKFPFTANGRARAXLQTDGFVK 423
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 200/392 (51%), Gaps = 24/392 (6%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGV 183
G K I+E +GG C+N GC+PSKAL++ S R + + H + +G++ D V
Sbjct: 26 GQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAK---HSEEMGIKAENVTIDFAKV 82
Query: 184 ADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF---GTDNIVTAKDIIIATG 240
+ ++ K+ + +K V+I+ G + V+ + T K+ IIATG
Sbjct: 83 QEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATG 142
Query: 241 SVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEA 300
S P + + ++ S AL L VP + ++G GYIG+E Y G++VT +E
Sbjct: 143 SRPIELPNFKFSNR-ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEG 201
Query: 301 LDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKD 360
+++ GF+ ++ + ++ L + ++ T A +DG VT E + +TK
Sbjct: 202 AGEILSGFEKQMAAIIKKRL-KKKGVEVVTNALAKGAEEREDGVTVTYEA-NGETK---- 255
Query: 361 TLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHLYCIGDA 419
T++ D L+ GR P T+ LGLE I + +T RG + VD++ R VP+++ IGD
Sbjct: 256 TIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR------TSVPNIFAIGDI 309
Query: 420 NGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKE 479
LAH AS +G E + G +++++IPA F+ PE + VG E QA++ E
Sbjct: 310 VPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKD----E 365
Query: 480 GFEVSVAKTSFKANTKALAENEGEGLAKGVPR 511
G +V AK F AN +ALA N+ +G K V R
Sbjct: 366 GIDVIAAKFPFAANGRALALNDTDGFLKLVVR 397
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 200/394 (50%), Gaps = 27/394 (6%)
Query: 124 GLKTAIIE-GDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182
G KT IE + +GGTC+N GC+PSKALL S + + G+++ +
Sbjct: 50 GFKTVCIEKNETLGGTCLNVGCIPSKALLNNS-HYYHMAHGKDFASRGIEMSEVRLNLDK 108
Query: 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIA 238
+ + + + + + K V + G G I G +V G ++ K+I+IA
Sbjct: 109 MMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIA 168
Query: 239 TGS--VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVT 296
TGS PF GI +D T+++S AL L+ VP+ + ++G+G IG+E V+ LG++VT
Sbjct: 169 TGSEVTPF--PGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 226
Query: 297 FIEALDQLMP-GFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGK-PVTIELIDAK 354
+E L + G D EI K QR+L + + T T DGK V+IE A
Sbjct: 227 AVEFLGHVGGVGIDMEISKNFQRIL-QKQGFKFKLNTKVTGATKKSDGKIDVSIE---AA 282
Query: 355 TKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHL 413
+ + + D L+ GR PFT LGLE + + + RG +PV+ R + +P++
Sbjct: 283 SGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQ------TKIPNI 336
Query: 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAR 473
Y IGD MLAH A +GI VE + G +++ +P+ +THPE++ VG +E Q +
Sbjct: 337 YAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLK 396
Query: 474 EKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
E EG E V K F AN++A + +G+ K
Sbjct: 397 E----EGIEYKVGKFPFAANSRAKTNADTDGMVK 426
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 200/394 (50%), Gaps = 27/394 (6%)
Query: 124 GLKTAIIE-GDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182
G KT IE + +GGTC+N GC+PSKALL S + + G+++ +
Sbjct: 29 GFKTVCIEKNETLGGTCLNVGCIPSKALLNNS-HYYHMAHGKDFASRGIEMSEVRLNLDK 87
Query: 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIA 238
+ + + + + + K V + G G I G +V G ++ K+I+IA
Sbjct: 88 MMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIA 147
Query: 239 TGS--VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVT 296
TGS PF GI +D T+++S AL L+ VP+ + ++G+G IG+E V+ LG++VT
Sbjct: 148 TGSEVTPF--PGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 205
Query: 297 FIEALDQLMP-GFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGK-PVTIELIDAK 354
+E L + G D EI K QR+L + + T T DGK V+IE A
Sbjct: 206 AVEFLGHVGGVGIDMEISKNFQRIL-QKQGFKFKLNTKVTGATKKSDGKIDVSIE---AA 261
Query: 355 TKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHL 413
+ + + D L+ GR PFT LGLE + + + RG +PV+ R + +P++
Sbjct: 262 SGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQ------TKIPNI 315
Query: 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAR 473
Y IGD MLAH A +GI VE + G +++ +P+ +THPE++ VG +E Q +
Sbjct: 316 YAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLK 375
Query: 474 EKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
E EG E V K F AN++A + +G+ K
Sbjct: 376 E----EGIEYKVGKFPFAANSRAKTNADTDGMVK 405
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 200/394 (50%), Gaps = 27/394 (6%)
Query: 124 GLKTAIIE-GDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182
G KT IE + +GGTC+N GC+PSKALL S + + G+++ +
Sbjct: 29 GFKTVCIEKNETLGGTCLNVGCIPSKALLNNS-HYYHMAHGTDFASRGIEMSEVRLNLDK 87
Query: 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIA 238
+ + + + + + K V + G G I G +V G ++ K+I+IA
Sbjct: 88 MMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIA 147
Query: 239 TGS--VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVT 296
TGS PF GI +D T+++S AL L+ VP+ + ++G+G IG+E V+ LG++VT
Sbjct: 148 TGSEVTPF--PGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 205
Query: 297 FIEALDQLMP-GFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGK-PVTIELIDAK 354
+E L + G D EI K QR+L + + T T DGK V+IE A
Sbjct: 206 AVEFLGHVGGVGIDMEISKNFQRIL-QKQGFKFKLNTKVTGATKKSDGKIDVSIE---AA 261
Query: 355 TKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHL 413
+ + + D L+ GR PFT LGLE + + + RG +PV+ R + +P++
Sbjct: 262 SGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQ------TKIPNI 315
Query: 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAR 473
Y IGD MLAH A +GI VE + G +++ +P+ +THPE++ VG +E Q +
Sbjct: 316 YAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLK 375
Query: 474 EKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
E EG E V K F AN++A + +G+ K
Sbjct: 376 E----EGIEYKVGKFPFAANSRAKTNADTDGMVK 405
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/406 (32%), Positives = 212/406 (52%), Gaps = 45/406 (11%)
Query: 124 GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKAL----GLQVHAAGY 178
G TA +E +GGTC+N GC+PSKALL S ++ +E + + ++++ A +
Sbjct: 28 GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVANF 87
Query: 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF-------GT---DN 228
+ ++ ++ + K V G G+ K++ GT D+
Sbjct: 88 QKA-----KDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDH 142
Query: 229 IVTAKDIIIATGS--VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSD 286
I+ K+II+ATGS PF GIE+D + +++S AL L+ +P + I+G G IGLE
Sbjct: 143 ILDVKNIIVATGSEVTPF--PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGS 200
Query: 287 VYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAK---DG 343
VY+ LGS+VT +E Q+ D E+ K Q+ L + +D+ +TK+ AK D
Sbjct: 201 VYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFL-KKQGLDFK---LSTKVISAKRNDDK 256
Query: 344 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRV 402
V I + D KT + ++ LE + L+A GR P+ GLG E I + V +RG + +D++
Sbjct: 257 NVVEIVVEDTKTNK-QENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFN- 314
Query: 403 IDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQV-TGRDHVLNHLSIPAACFTHPE 461
+ PH+ +GD MLAH A +GI+ VE + TG HV N+ +IP+ ++HPE
Sbjct: 315 -----SKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHV-NYNNIPSVMYSHPE 368
Query: 462 ISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
++ VG TE Q +E G + + K F AN++A + EG K
Sbjct: 369 VAWVGKTEEQLKEA----GIDYKIGKFPFAANSRAKTNQDTEGFVK 410
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 190/397 (47%), Gaps = 37/397 (9%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGV 183
G+ T ++EG +GGTC+N GC+PSKAL+ V+ + + LG+ V + D
Sbjct: 28 GIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQS 87
Query: 184 ADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS-- 241
+ + ++ + +K GV ++ G +L ++V+ I + +++ATGS
Sbjct: 88 VAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRI-QCEHLLLATGSSS 146
Query: 242 --VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299
+P +P G VI+S AL + +P + +VG GYIGLE Y LG++V+ +E
Sbjct: 147 VELPMLPL-----GGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVE 201
Query: 300 ALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG----VFATKITPAKDGKPVTIELIDAKT 355
A ++++P +D E+ L I H G + A DGK +
Sbjct: 202 ARERILPTYDSELTAPVAESL-KKLGIALHLGHSVEGYENGCLLANDGKGGQLR------ 254
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYC 415
LE D L+A GR P T G LE +++ + +DER + N ++
Sbjct: 255 ------LEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHN------VWA 302
Query: 416 IGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREK 475
IGD G+ MLAH A AQG V E + G+ +I A CFT PE+ +VG T E+
Sbjct: 303 IGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTP----EQ 358
Query: 476 AEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRN 512
A ++G + VA+ F AN +A++ G + V R
Sbjct: 359 ASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARR 395
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 199/405 (49%), Gaps = 59/405 (14%)
Query: 122 EKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180
++GLK AI+E +GG C+N GC+PSKALL + + E++ H+ A G++ D
Sbjct: 27 DEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR---HLAANGIKYPEPELDI 83
Query: 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP--------------QKVKFGT 226
+ + + + +++ L K+ VD++ G G L P Q G
Sbjct: 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGE 143
Query: 227 DNIVTAKDIIIATGS----VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGL 282
IV K+ IIA GS +PF+P + +I S AL L+ VP + I+G G IGL
Sbjct: 144 KKIVAFKNCIIAAGSRVTKLPFIP-----EDPRIIDSSGALALKEVPGKLLIIGGGIIGL 198
Query: 283 EFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQR--------VLINPRKIDYHTGVFA 334
E VY+ LGS + +E +D LM G D ++ K+ Q+ +++N + +
Sbjct: 199 EMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTV-------- 250
Query: 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGF 393
+ P +DG VT E +A PK+ DA L+A GRAP + E V VT RGF
Sbjct: 251 -AVEPKEDGVYVTFEGANA----PKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGF 305
Query: 394 VPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIP 453
+ VD++MR VPH+Y IGD G+ MLAH A +G E G + IP
Sbjct: 306 IEVDKQMR------TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVIP 359
Query: 454 AACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALA 498
+T PE++ VG TE A+ A K ++ A + A+ +A+A
Sbjct: 360 GVAYTSPEVAWVGETELSAKASARK----ITKANFPWAASGRAIA 400
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 199/405 (49%), Gaps = 59/405 (14%)
Query: 122 EKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180
++GLK AI+E +GG C+N GC+PSKALL + + E++ H+ A G++ D
Sbjct: 27 DEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR---HLAANGIKYPEPELDI 83
Query: 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP--------------QKVKFGT 226
+ + + + +++ L K+ VD++ G G L P Q G
Sbjct: 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGE 143
Query: 227 DNIVTAKDIIIATGS----VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGL 282
IV K+ IIA GS +PF+P + +I S AL L+ VP + I+G G IGL
Sbjct: 144 KKIVAFKNCIIAAGSRVTKLPFIP-----EDPRIIDSSGALALKEVPGKLLIIGGGIIGL 198
Query: 283 EFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQR--------VLINPRKIDYHTGVFA 334
E VY+ LGS + +E +D LM G D ++ K+ Q+ +++N + +
Sbjct: 199 EMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTV-------- 250
Query: 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGF 393
+ P +DG VT E +A PK+ DA L+A GRAP + E V VT RGF
Sbjct: 251 -AVEPKEDGVYVTFEGANA----PKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGF 305
Query: 394 VPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIP 453
+ VD++MR VPH+Y IGD G+ MLAH A +G E G + IP
Sbjct: 306 IEVDKQMR------TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVIP 359
Query: 454 AACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALA 498
+T PE++ VG TE A+ A K ++ A + A+ +A+A
Sbjct: 360 GVAYTSPEVAWVGETELSAKASARK----ITKANFPWAASGRAIA 400
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 200/409 (48%), Gaps = 58/409 (14%)
Query: 124 GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182
G+KTA +E +GGTC+N GC+PSKALL H L HA + R G
Sbjct: 25 GMKTACVEKRGALGGTCLNVGCIPSKALL-------------HATHLYHDAHA-NFARYG 70
Query: 183 V--ADHANNLATKIRNNLTNSMKAL--GVDIL---------TGVGTILGPQKVKF----G 225
+ + + K++ ++K L GV+ L G G+ ++ G
Sbjct: 71 LMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDG 130
Query: 226 TDNIVTAKDIIIATGS----VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIG 281
++ K IIATGS +PF+P D K V++S AL L VP + ++G G IG
Sbjct: 131 KQEMLETKKTIIATGSEPTELPFLP----FDEKVVLSSTGALALPRVPKTMVVIGGGVIG 186
Query: 282 LEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPA- 340
LE V+ LG+EVT +E + P D ++ L K+ + T +TK+
Sbjct: 187 LELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMT---STKVVGGT 243
Query: 341 KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVV-TQRGFVPVDER 399
+G V++E+ K ++T+ +A L++ GR PFT GLGL+ INV +RGFV + +
Sbjct: 244 NNGDSVSLEVEGKNGK--RETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDH 301
Query: 400 MRVIDANGNLVPHLYCIGDANGKM-MLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFT 458
+P +Y IGD K MLAH A +G++ E + G+ +N+ IPA +T
Sbjct: 302 FE------TSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYT 355
Query: 459 HPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
PE++ VG +E + + KEG V K F AN++A A + +G K
Sbjct: 356 MPEVASVGKSEDELK----KEGVAYKVGKFPFNANSRAKAVSTEDGFVK 400
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 182/381 (47%), Gaps = 32/381 (8%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA--LGLQVHAAGYDRQ 181
G K A+IE +GGTCVN GCVP K + + +++ HM G ++ +
Sbjct: 27 GQKCALIEAKELGGTCVNVGCVPKKVMWHAA----QIREAIHMYGPDYGFDTTINKFNWE 82
Query: 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS 241
+ +I + N + VD++ G + + ++ + I TA I+IATG
Sbjct: 83 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETI-TADHILIATGG 141
Query: 242 VPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299
P P G+E I SD L +P+ +A+VG+GYIG+E V LG++ E
Sbjct: 142 RPSHPDIPGVEYG----IDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFE 197
Query: 300 ALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPK 359
D +P FDP I + V+ N HT + DG +T+EL D +++
Sbjct: 198 MFDAPLPSFDPMISETLVEVM-NAEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSE--- 252
Query: 360 DTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 418
VD + A GR P + + LE V T ++G++ VD+ N N + +Y +GD
Sbjct: 253 ---TVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-----NTN-IEGIYAVGD 303
Query: 419 ANGKMMLAHAASAQGISVVEQVTGR--DHVLNHLSIPAACFTHPEISMVGLTEPQAREKA 476
G + L A A G + E++ D L++ +IP F+HP I VGLTEPQARE+
Sbjct: 304 NTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQY 363
Query: 477 EKEGFEVSVAKTSFKANTKAL 497
+ +V V K+SF A A+
Sbjct: 364 GDD--QVKVYKSSFTAMYTAV 382
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 183/383 (47%), Gaps = 32/383 (8%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGV 183
G + A+IE +GGTCVN GCVP K + S ++ G+Q D +
Sbjct: 27 GKRVALIESKALGGTCVNVGCVPKKVMWYAS---HLAEAVRDAPGFGVQASGGTLDWPRL 83
Query: 184 ADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP 243
+ I + ++ LG+ + G + ++ + +A I+IATG P
Sbjct: 84 VAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRL-SADHIVIATGGRP 142
Query: 244 FVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301
VP+ G E+ ITSD L+ P +AI+G+GYIG+E + + + GSEVT +
Sbjct: 143 IVPRLPGAELG----ITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE 198
Query: 302 DQLMPGFDPEI-GKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKD 360
D+L+ FDP + LA+ ++ + I+ H + +D + T+ D E D
Sbjct: 199 DRLLFQFDPLLSATLAEN--MHAQGIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFD 254
Query: 361 TLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHLYCIGDA 419
++ + A GRAP T LGLE + V G VP D N N VP +Y +GD
Sbjct: 255 SV-----IWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ-----NTN-VPGVYALGDI 303
Query: 420 NGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAE 477
G+ L A A G + E++ + L++ +IP F HP +S VGL+EP+ARE+
Sbjct: 304 TGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERL- 362
Query: 478 KEGFEVSVAKTSFKANTKALAEN 500
G ++V +TSF AL E+
Sbjct: 363 --GDVLTVYETSFTPMRYALNEH 383
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 179/381 (46%), Gaps = 32/381 (8%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA--LGLQVHAAGYDRQ 181
G K A+IE +GGTCVN GCVP K + + +++ HM G ++ +
Sbjct: 27 GQKCALIEAKELGGTCVNVGCVPKKVMWHAA----QIREAIHMYGPDYGFDTTINKFNWE 82
Query: 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS 241
+ +I + N + VD++ G + + ++ + I TA I+IATG
Sbjct: 83 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETI-TADHILIATGG 141
Query: 242 VPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299
P P G+E I SD L +P+ +A+VG+GYI +E + V LG++
Sbjct: 142 RPSHPDIPGVEYG----IDSDGFFALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFV 197
Query: 300 ALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPK 359
+ FDP I + V+ N HT + DG +T+EL D +++
Sbjct: 198 RKHAPLRSFDPMISETLVEVM-NAEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSET-- 253
Query: 360 DTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 418
VD + A GR P + + LE V T ++G++ VD+ N N + +Y +GD
Sbjct: 254 ----VDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-----NTN-IEGIYAVGD 303
Query: 419 ANGKMMLAHAASAQGISVVEQVTGR--DHVLNHLSIPAACFTHPEISMVGLTEPQAREKA 476
G + L A A G + E++ D L++ +IP F+HP I VGLTEPQARE+
Sbjct: 304 NTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQY 363
Query: 477 EKEGFEVSVAKTSFKANTKAL 497
+ +V V K+SF A A+
Sbjct: 364 GDD--QVKVYKSSFTAMYTAV 382
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 184/395 (46%), Gaps = 35/395 (8%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQS--EHHMKALGLQVHAAGYDRQ 181
GL TAI+E GG C+N GC+PSKALL R EL KA G+ +D
Sbjct: 28 GLSTAIVEPKYWGGVCLNVGCIPSKALL----RNAELVHIFTKDAKAFGISGEVT-FDYG 82
Query: 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIII 237
D + +A + MK + + G GT + G VT + II
Sbjct: 83 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAII 142
Query: 238 ATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
ATGS + G + V + L E +P I I G+G IG+EF V G +VT
Sbjct: 143 ATGSSTRLVPGTSLSANVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTI 201
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDG-KPVTIELI-DAKT 355
+E L + +P D ++ K ++ +K+ T + ATK+ DG VT+ + D
Sbjct: 202 VEFLPRALPNEDADVSKEIEKQF---KKLGV-TILTATKVESIADGGSQVTVTVTKDGVA 257
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHLY 414
+E L+ + L A G AP G GL+ V +T R + VD+ MR V H+Y
Sbjct: 258 QE----LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMR------TNVGHIY 307
Query: 415 CIGDANGKMMLAHAASAQGISVVEQVTGRDHVL--NHLSIPAACFTHPEISMVGLTEPQA 472
IGD NG + LAH A AQG+ E + G + + +H +P A F P ++ GLTE QA
Sbjct: 308 AIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQA 367
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
R EG++V VAK F AN KA + G K
Sbjct: 368 R----NEGYDVVVAKFPFTANAKAHGVGDPSGFVK 398
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 130/395 (32%), Positives = 181/395 (45%), Gaps = 35/395 (8%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQS--EHHMKALGLQVHAAGYDRQ 181
GL TAI+E GG C+N GC+PSKALL R EL KA G+ +D
Sbjct: 26 GLSTAIVEPKYWGGVCLNVGCIPSKALL----RNAELVHIFTKDAKAFGISGEVT-FDYG 80
Query: 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIII 237
D + +A + K + + G GT + G VT + II
Sbjct: 81 IAYDRSRKVAEGRVAGVHFLXKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAII 140
Query: 238 ATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
ATGS + G + V + L E +P I I G+G IG EF V G +VT
Sbjct: 141 ATGSSTRLVPGTSLSANVVTYEEQILSRE-LPKSIIIAGAGAIGXEFGYVLKNYGVDVTI 199
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDG-KPVTIELI-DAKT 355
+E L + +P D ++ K ++ +K+ T + ATK+ DG VT+ + D
Sbjct: 200 VEFLPRALPNEDADVSKEIEKQF---KKLGV-TILTATKVESIADGGSQVTVTVTKDGVA 255
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHLY 414
+E L+ + L A G AP G GL+ V +T R + VD+ R V H+Y
Sbjct: 256 QE----LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYXR------TNVGHIY 305
Query: 415 CIGDANGKMMLAHAASAQGISVVEQVTGRDHVL--NHLSIPAACFTHPEISMVGLTEPQA 472
IGD NG + LAH A AQG+ E + G + + +H +P A F P ++ GLTE QA
Sbjct: 306 AIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRXLPRATFCQPNVASFGLTEQQA 365
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
R EG++V VAK F AN KA + G K
Sbjct: 366 R----NEGYDVVVAKFPFTANAKAHGVGDPSGFVK 396
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 188/406 (46%), Gaps = 36/406 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN GCVP K + + + SE H G ++
Sbjct: 42 ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 96
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 97 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 156
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 157 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 216
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 217 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 269
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 270 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 323
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 324 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 383
Query: 468 TEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K G E V TSF A+ + + + + K V N
Sbjct: 384 TEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 426
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 188/406 (46%), Gaps = 36/406 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN GCVP K + + + SE H G ++
Sbjct: 40 ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 94
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 95 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 154
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 155 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 214
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 215 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 267
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 268 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 321
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 322 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 381
Query: 468 TEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K G E V TSF A+ + + + + K V N
Sbjct: 382 TEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 424
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 188/406 (46%), Gaps = 36/406 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN GCVP K + + + SE H G ++
Sbjct: 41 ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 95
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 155
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 156 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 215
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 216 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 268
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 269 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 322
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 323 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 382
Query: 468 TEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K G E V TSF A+ + + + + K V N
Sbjct: 383 TEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 425
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 188/406 (46%), Gaps = 36/406 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN GCVP K + + + SE H G ++
Sbjct: 24 ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 78
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 79 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 138
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 139 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 198
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 199 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 251
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 252 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 305
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 306 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 365
Query: 468 TEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K G E V TSF A+ + + + + K V N
Sbjct: 366 TEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 408
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 122/407 (29%), Positives = 190/407 (46%), Gaps = 36/407 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALL--AVSGRMRELQSEHHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN GCVP K + AV +++ + + +
Sbjct: 24 ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIK 83
Query: 180 RQGVADHANNL-ATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIII 237
+ A + + L A +NNLT S ++I+ G P+ + TA I+I
Sbjct: 84 EKRDAXYVSRLNAIXYQNNLTKSH----IEIIRGHAAFTSDPKPTIEVSGKKYTAPHILI 139
Query: 238 ATGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVT 296
ATG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 140 ATGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTS 199
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELID 352
+ D+++ FD I L N GV K + K+ K + + ++
Sbjct: 200 LMIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVT 252
Query: 353 A-KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGN 408
A + P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 253 AVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN 307
Query: 409 LVPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVG 466
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VG
Sbjct: 308 -VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVG 366
Query: 467 LTEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
LTE +A K G E V TSF A+ + + + + K V N
Sbjct: 367 LTEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 410
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 187/405 (46%), Gaps = 34/405 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN GCVP K + + + SE H G ++
Sbjct: 41 ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 95
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 155
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 156 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 215
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 216 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 268
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 269 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 322
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 323 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 382
Query: 468 TEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K E V TSF A+ + + + + K V N
Sbjct: 383 TEDEAIHKYGIE--NVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 425
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 187/405 (46%), Gaps = 34/405 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN GCVP K + + + SE H G ++
Sbjct: 24 ELGARAAVVESHKLGGTCVNVGCVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 78
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 79 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 138
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 139 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 198
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 199 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 251
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 252 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 305
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 306 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 365
Query: 468 TEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K E V TSF A+ + + + + K V N
Sbjct: 366 TEDEAIHKYGIE--NVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 408
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 187/406 (46%), Gaps = 36/406 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGT VN GCVP K + + + SE H G ++
Sbjct: 41 ELGARAAVVESHKLGGTXVNVGCVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 95
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 155
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 156 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 215
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 216 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 268
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 269 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 322
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 323 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 382
Query: 468 TEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K G E V TSF A+ + + + + K V N
Sbjct: 383 TEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 425
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 187/406 (46%), Gaps = 36/406 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN G VP K + + + SE H G ++
Sbjct: 41 ELGARAAVVESHKLGGTCVNVGXVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 95
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 155
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 156 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 215
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 216 MIRHDKVLRSFDSMISTNCTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 268
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 269 VPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 322
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 323 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 382
Query: 468 TEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K G E V TSF A+ + + + + K V N
Sbjct: 383 TEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 425
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/406 (28%), Positives = 187/406 (46%), Gaps = 36/406 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSE--HHMKALGLQVHAAGYD 179
E G + A++E +GGTCVN G VP K + + + SE H G ++
Sbjct: 41 ELGARAAVVESHKLGGTCVNVGXVPKKVMWNTA-----VHSEFMHDHADYGFPSCEGKFN 95
Query: 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQKVKFGTDNIVTAKDIIIA 238
+ + + + +++ N++ ++I+ G P+ + TA I+IA
Sbjct: 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIA 155
Query: 239 TGSVPFVPKGIEVDGKTV-ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTF 297
TG +P P ++ G ++ ITSD +LE +P IVG+GYI +E + + +ALGS+ +
Sbjct: 156 TGGMPSTPHESQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSL 215
Query: 298 IEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP----VTIELIDA 353
+ D+++ FD I L N GV K + K+ K + + ++ A
Sbjct: 216 MIRHDKVLRSFDSMISTNXTEELEN-------AGVEVLKFSQVKEVKKTLSGLEVSMVTA 268
Query: 354 -KTKEPKDTL--EVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409
+ P T+ +VD L A GR P T L L + + T +G + VDE N N
Sbjct: 269 VPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-----NTN- 322
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGL 467
V +Y +GD GK +L A A G + ++ D L++ +IP F+HP I VGL
Sbjct: 323 VKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGL 382
Query: 468 TEPQAREKAEKEGFE-VSVAKTSFKANTKALAENEGEGLAKGVPRN 512
TE +A K G E V TSF A+ + + + + K V N
Sbjct: 383 TEDEA---IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVXAN 425
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 162/359 (45%), Gaps = 30/359 (8%)
Query: 126 KTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVAD 185
+ +I+ D +GG V CVPSK +A +G EL+ H+ + A +
Sbjct: 30 QVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHL-GFHIDFDDAKISLPQIHA 88
Query: 186 HANNLATKIRNNLTNSMKALGVDILTGVGTI------LGPQKVKF----GTDNIVTAKDI 235
LA ++T + ++GV ++ G G + L ++K G+ + A +
Sbjct: 89 RVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVV 148
Query: 236 IIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEV 295
++ATG+ P + + DG+ ++T L+ +PD + +VGSG G EF D YT LG V
Sbjct: 149 LVATGASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPV 208
Query: 296 TFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKT 355
T + + D ++P D + + + R + A +T + G V + + D +T
Sbjct: 209 TVVASQDHVLPYEDADAALVLEESFAE-RGVRLFKNARAASVT--RTGAGVLVTMTDGRT 265
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRG-FVPVDERMRVIDANGNLVPHLY 414
E AL+ G P T+GLGLE + + RG ++ VD R L +Y
Sbjct: 266 VEGSH------ALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR------TLATGIY 313
Query: 415 CIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQA 472
GD G + LA A+ QG + G + ++ A FT PEI+ VG+ PQ+
Sbjct: 314 AAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGV--PQS 370
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 110/407 (27%), Positives = 161/407 (39%), Gaps = 33/407 (8%)
Query: 99 SFDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMR 158
+FDYD G K AI E GGTCV RGCVP K + S
Sbjct: 3 AFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFAE 62
Query: 159 ELQSEHHMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG 218
+ G V + +D + ++ + G +IL + G
Sbjct: 63 HFED---AAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAG 119
Query: 219 PQKVKF-GTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGS 277
P VK + VTA+ I+IA G P P + ITS+ A L +P+ I I G
Sbjct: 120 PNTVKLLASGKTVTAERIVIAVGGHP-SPHDALPGHELCITSNEAFDLPALPESILIAGG 178
Query: 278 GYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKI 337
GYI +EF++++ LG + T I +++ FD + + + I +
Sbjct: 179 GYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDX-RRGLHAAXEEKGIRILCEDIIQSV 237
Query: 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPV 396
+ DG+ V T + D +A GR P TNGLGLE V T + G + V
Sbjct: 238 SADADGRRVA-------TTXKHGEIVADQVXLALGRXPNTNGLGLEAAGVRTNELGAIIV 290
Query: 397 DERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVE-----QVTGRDHVLNHLS 451
D R P +Y +GD ++ L A + +E T DH L
Sbjct: 291 DAFSR------TSTPGIYALGDVTDRVQLTPVAIHEAXCFIETEYKNNPTSPDHDL---- 340
Query: 452 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALA 498
I A F+ PEI VG+TE +A K + E+ V + F+ L+
Sbjct: 341 IATAVFSQPEIGTVGITEEEAARKFQ----EIEVYRAEFRPXKATLS 383
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 173/402 (43%), Gaps = 38/402 (9%)
Query: 99 SFDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMR 158
SFD+D G + AI E +GGTCV RGCVP K S +
Sbjct: 24 SFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQ 83
Query: 159 ELQSEHHMKALGLQVHAAG--YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI 216
E K++G A ++ + + N +++ ++ V I
Sbjct: 84 EFS-----KSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVF 138
Query: 217 LGPQKVKFG-TDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIV 275
+ ++ T ++A+ I+IATG+ I+ +TS+ LE +P I IV
Sbjct: 139 VDEHTLELSVTGERISAEKILIATGAKIVSNSAIK-GSDLCLTSNEIFDLEKLPKSIVIV 197
Query: 276 GSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT 335
G GYIG+EF++++ LG + T + D ++ FD ++ +L ++ + I +
Sbjct: 198 GGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMV-AKGISIIYEATVS 256
Query: 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFV 394
++ ++ V + T+ D ++ATGR P T GLGLE V V + G V
Sbjct: 257 QVQSTENCYNVVL--------TNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAV 308
Query: 395 PVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQV-----TGRDHVLNH 449
VDE+M V H++ +GD G + L A + V+ T D+ L
Sbjct: 309 VVDEKMT------TNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDL-- 360
Query: 450 LSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFK 491
I A F+ PEI VGL+E A + ++ V + +T F+
Sbjct: 361 --ITTAVFSQPEIGTVGLSEEDALHRYKR----VEIYRTVFR 396
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 174/382 (45%), Gaps = 59/382 (15%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHAN------ 188
+GGTCVN GCVP K ++ + M +H ++ G G++ G + AN
Sbjct: 48 LGGTCVNVGCVPKKLMVTGAQYM-----DHLRESAGF-----GWEFDGSSVKANWKKLIA 97
Query: 189 --NLATKIRNNLTNSM--KALGVDILTGVGTILGPQKV--------KFGTDNIVTAKDII 236
N A N M G+D G G++ V K + A I+
Sbjct: 98 AKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHIL 157
Query: 237 IATGSVPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL--- 291
+ATGS P +P GIE I+S+ A L P + VG G+I +EF+ ++ A
Sbjct: 158 LATGSWPQMPAIPGIE----HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPP 213
Query: 292 GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDG-KPVTIEL 350
G +VT + ++ GFD I + + L I+ T K++ DG K VT E
Sbjct: 214 GGKVTLCYRNNLILRGFDETIREEVTKQL-TANGIEIMTNENPAKVSLNTDGSKHVTFE- 271
Query: 351 IDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNL 409
TL+VD ++A GR P TN L L N+ V +T +G V VDE R
Sbjct: 272 -------SGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSR------TN 318
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQVTG-RDHVLNHLSIPAACFTHPEISMVGLT 468
VP++Y IGD ++ML A +G ++V+ V G + +H + +A F+ P I GL
Sbjct: 319 VPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLI 378
Query: 469 EPQAREKAEKEGFEVSVAKTSF 490
E E A KE +V+V +SF
Sbjct: 379 E----EVAAKEFEKVAVYMSSF 396
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 174/382 (45%), Gaps = 59/382 (15%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHAN------ 188
+GGTCVN GCVP K ++ + M +H ++ G G++ G + AN
Sbjct: 51 LGGTCVNVGCVPKKLMVTGAQYM-----DHLRESAGF-----GWEFDGSSVKANWKKLIA 100
Query: 189 --NLATKIRNNLTNSM--KALGVDILTGVGTILGPQKV--------KFGTDNIVTAKDII 236
N A N M G+D G G++ V K + A I+
Sbjct: 101 AKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHIL 160
Query: 237 IATGSVPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL--- 291
+ATGS P +P GIE I+S+ A L P + VG G+I +EF+ ++ A
Sbjct: 161 LATGSWPQMPAIPGIE----HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPP 216
Query: 292 GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDG-KPVTIEL 350
G +VT + ++ GFD I + + L I+ T K++ DG K VT E
Sbjct: 217 GGKVTLCYRNNLILRGFDETIREEVTKQL-TANGIEIMTNENPAKVSLNTDGSKHVTFE- 274
Query: 351 IDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNL 409
TL+VD ++A GR P TN L L N+ V +T +G V VDE R
Sbjct: 275 -------SGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTN------ 321
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQVTG-RDHVLNHLSIPAACFTHPEISMVGLT 468
VP++Y IGD ++ML A +G ++V+ V G + +H + +A F+ P I GL
Sbjct: 322 VPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLI 381
Query: 469 EPQAREKAEKEGFEVSVAKTSF 490
E E A KE +V+V +SF
Sbjct: 382 E----EVAAKEFEKVAVYMSSF 399
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 169/377 (44%), Gaps = 28/377 (7%)
Query: 124 GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSG---RMRELQSEHHMKALGLQVHAAGYDR 180
G KT ++E +GGTCVN GCVP K + S R+ + L L ++
Sbjct: 34 GAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNW 93
Query: 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDII 236
+ ++ +++ VD++ G V+ T + +A I+
Sbjct: 94 PEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHIL 153
Query: 237 IATGSVPFVPKGIEVDGKTVIT-SDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEV 295
+ATG P+ I G + T SD +LE P + +VG+GYIG+E + V+ LGSE
Sbjct: 154 VATGGKAIFPENIP--GFELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSET 211
Query: 296 TFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKT 355
+ + ++ FD I + I+ H K+ + + I + D+K+
Sbjct: 212 HLVIRGETVLRKFDECIQNTITDHYV-KEGINVHKLSKIVKVEKNVETDKLKIHMNDSKS 270
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHLY 414
+ +VD + GR G+G EN+ + + + DE N N VP++Y
Sbjct: 271 ID-----DVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQ-----NTN-VPNIY 318
Query: 415 CIGDANGKMMLAHAASAQGISVVEQVTG----RDHVLNHLSIPAACFTHPEISMVGLTEP 470
+GD GK+ L A A G + ++ G R+ L++ ++P+ F+HPE +G++E
Sbjct: 319 SLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEK 378
Query: 471 QAREKAEKEGFEVSVAK 487
+A EK KE +V +K
Sbjct: 379 EAIEKYGKENIKVYNSK 395
>pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera
pdb|1ZX9|A Chain A, Crystal Structure Of Tn501 Mera
Length = 467
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 104/395 (26%), Positives = 172/395 (43%), Gaps = 34/395 (8%)
Query: 122 EKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181
E+G + +IE +GGTCVN GCVPSK ++ + + L+ E G+ DR
Sbjct: 25 EQGAQVTLIERGTIGGTCVNVGCVPSKIMIR-AAHIAHLRRESPFDG-GIAATVPTIDRS 82
Query: 182 GVADHANNLATKIRNNLTNSMKALG----VDILTGVGTILGPQ----KVKFGTDNIVTAK 233
+ ++R+ + LG + ++ G Q ++ G + +V
Sbjct: 83 KLLAQQQARVDELRHAKYEGI--LGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFD 140
Query: 234 DIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGS 293
++ATG+ P VP + TS AL + +P+ +A++GS + LE + + LGS
Sbjct: 141 RCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGS 200
Query: 294 EVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDA 353
+VT + A + L DP IG+ G+ + T A + E +
Sbjct: 201 KVTVL-ARNTLFFREDPAIGEAVTAAF-------RAEGIEVLEHTQASQVAHMDGEFVLT 252
Query: 354 KTKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPH 412
T L D L+ATGR P T L L+ V V +G + +D+ MR + P+
Sbjct: 253 TTH---GELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSN------PN 303
Query: 413 LYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQA 472
+Y GD + + A+A G +TG D L+ ++PA FT P+++ VG +E +A
Sbjct: 304 IYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEA 363
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAK 507
+G E + +ALA + G K
Sbjct: 364 HH----DGIETDSRTLTLDNVPRALANFDTRGFIK 394
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 165/362 (45%), Gaps = 28/362 (7%)
Query: 135 VGGTCVNRGCVPSKAL--LAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLAT 192
+GGTCVN GC+P K + A+ G+ + + K H + V +H +L
Sbjct: 55 LGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNW 114
Query: 193 KIRNNLTNSMKALGVDILTGVGTILGPQKV----KFGTDNIVTAKDIIIATGSVPFVPKG 248
R +++ V G +GP K+ G + + +A+ +IATG P G
Sbjct: 115 GYRV----ALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRY-LG 169
Query: 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGF 308
I D + I+SD L + P +VG+ Y+ LE + +G +VT + L+ GF
Sbjct: 170 IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGF 228
Query: 309 DPEIG-KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL--EVD 365
D ++ K+ + + I + TKI + G P ++ + AK+ ++T+ E +
Sbjct: 229 DQDMANKIGEH--MEEHGIKFIRQFVPTKIEQIEAGTPGRLK-VTAKSTNSEETIEDEFN 285
Query: 366 AALIATGRAPFTNGLGLENINVVT--QRGFVPVDERMRVIDANGNLVPHLYCIGDA-NGK 422
L+A GR T +GLE + V + G +P V D VP++Y IGD GK
Sbjct: 286 TVLLAVGRDSCTRTIGLETVGVKINEKTGKIP------VTDEEQTNVPYIYAIGDILEGK 339
Query: 423 MMLAHAASAQGISVVEQVTGRDHV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF 481
+ L A G + +++ G V ++ ++P FT E GL+E +A EK +E
Sbjct: 340 LELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENI 399
Query: 482 EV 483
EV
Sbjct: 400 EV 401
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 186/423 (43%), Gaps = 49/423 (11%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNL---A 191
+GGTCVN GCVP K L+ + +L E G ++ DR+ + + L
Sbjct: 68 LGGTCVNVGCVPKK-LMVTGAQYMDLIRES--GGFGWEM-----DRESLCPNWKTLIAAK 119
Query: 192 TKIRNNLTNSMKAL-----GVDILTGVGTILGPQKVKF------GTDNIVT--AKDIIIA 238
K+ N++ S K++ G+ G G + V +D + T + I+IA
Sbjct: 120 NKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLETLDTEYILIA 179
Query: 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDV---YTALGSEV 295
TGS P G+ D + ITS+ A LE P + VG GYI +EF+ + Y G V
Sbjct: 180 TGSWP-TRLGVPGD-EFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYV 237
Query: 296 TFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKT 355
D ++ GFD E+ K + L I T + TKIT +DG + D T
Sbjct: 238 DLCYRGDLILRGFDTEVRKSLTKQL-GANGIRVRTNLNPTKITKNEDGSN-HVHFNDG-T 294
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 414
+E + D ++A GR P + L L+ V T + G V VD + V ++Y
Sbjct: 295 EE-----DYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKT------SVDNIY 343
Query: 415 CIGDANGKMMLAHAASAQGISVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAR 473
IGD ++ML A +G + VE V G+ +H + A F+ P I G+TE +A
Sbjct: 344 AIGDVTNRVMLTPVAINEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAA 403
Query: 474 EKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVK 533
+ E V+V +SF ++ ++ + + N ++ E H S P +++
Sbjct: 404 KNYET----VAVYASSFTPLMHNISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQ 459
Query: 534 KLA 536
+
Sbjct: 460 SVG 462
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 165/362 (45%), Gaps = 28/362 (7%)
Query: 135 VGGTCVNRGCVPSKAL--LAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLAT 192
+GGTCVN GC+P K + A+ G+ + + K H + V +H +L
Sbjct: 55 LGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNW 114
Query: 193 KIRNNLTNSMKALGVDILTGVGTILGPQKV----KFGTDNIVTAKDIIIATGSVPFVPKG 248
R +++ V G +GP K+ G + + +A+ +IATG P G
Sbjct: 115 GYRV----ALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRY-LG 169
Query: 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGF 308
I D + I+SD L + P +VG+ Y+ LE + +G +VT + L+ GF
Sbjct: 170 IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGF 228
Query: 309 DPEIG-KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL--EVD 365
D ++ K+ + + I + TKI + G P ++ + AK+ ++T+ E +
Sbjct: 229 DQDMANKIGEH--MEEHGIKFIRQFVPTKIEQIEAGTPGRLK-VTAKSTNSEETIEDEFN 285
Query: 366 AALIATGRAPFTNGLGLENINVVT--QRGFVPVDERMRVIDANGNLVPHLYCIGDA-NGK 422
L+A GR T +GLE + V + G +P V D VP++Y IGD GK
Sbjct: 286 TVLLAVGRDSCTRTIGLETVGVKINEKTGKIP------VTDEEQTNVPYIYAIGDILEGK 339
Query: 423 MMLAHAASAQGISVVEQVTGRDHV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF 481
+ L A G + +++ G V ++ ++P FT E GL+E +A EK +E
Sbjct: 340 LELTPVAIQAGRLLAQRLYGGSTVKCDYDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENI 399
Query: 482 EV 483
EV
Sbjct: 400 EV 401
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/423 (27%), Positives = 186/423 (43%), Gaps = 49/423 (11%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNL---A 191
+GGTCVN GCVP K L+ + +L E G ++ DR+ + + L
Sbjct: 68 LGGTCVNVGCVPKK-LMVTGAQYMDLIRES--GGFGWEM-----DRESLCPNWKTLIAAK 119
Query: 192 TKIRNNLTNSMKAL-----GVDILTGVGTILGPQKVKF------GTDNIVT--AKDIIIA 238
K+ N++ S K++ G+ G G + V +D + T + I+IA
Sbjct: 120 NKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLETLDTEYILIA 179
Query: 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDV---YTALGSEV 295
TGS P G+ D + ITS+ A LE P + VG GYI +EF+ + Y G V
Sbjct: 180 TGSWP-TRLGVPGD-EFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYV 237
Query: 296 TFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKT 355
D ++ GFD E+ K + L I T + TKIT +DG + D T
Sbjct: 238 DLCYRGDLILRGFDTEVRKSLTKQL-GANGIRVRTNLNPTKITKNEDGSN-HVHFNDG-T 294
Query: 356 KEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 414
+E + D ++A GR P + L L+ V T + G V VD + V ++Y
Sbjct: 295 EE-----DYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKT------SVDNIY 343
Query: 415 CIGDANGKMMLAHAASAQGISVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAR 473
IGD ++ML A +G + VE V G+ +H + A F+ P I G+TE +A
Sbjct: 344 AIGDVTNRVMLTPVAINEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAA 403
Query: 474 EKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVK 533
+ E V+V +SF ++ ++ + + N ++ E H S P +++
Sbjct: 404 KNYET----VAVYASSFTPLMHNISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQ 459
Query: 534 KLA 536
+
Sbjct: 460 SVG 462
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 178/414 (42%), Gaps = 37/414 (8%)
Query: 92 GDNGIPKSFDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIEGDV---------VGGTCVNR 142
G +PKS+DYD + G K +++ +GGTCVN
Sbjct: 25 GPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV 84
Query: 143 GCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR--QGVADHANNLATKIRNNLTN 200
GC+P K + + + LQ + + +DR + V +H +L R
Sbjct: 85 GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRV---- 140
Query: 201 SMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
+++ V G +GP ++K G + I +A+ +IATG P GI D +
Sbjct: 141 ALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKEYC 199
Query: 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIG-KL 315
I+SD L + P +VG+ Y+ LE + +G +VT + L+ GFD ++ K+
Sbjct: 200 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKI 258
Query: 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL--EVDAALIATGR 373
+ + I + K+ + G P + ++ A++ ++ + E + ++A GR
Sbjct: 259 GEH--MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV-AQSTNSEEIIEGEYNTVMLAIGR 315
Query: 374 APFTNGLGLENINVVT--QRGFVPVDERMRVIDANGNLVPHLYCIGDA-NGKMMLAHAAS 430
T +GLE + V + G +P V D VP++Y IGD K+ L A
Sbjct: 316 DACTRKIGLETVGVKINEKTGKIP------VTDEEQTNVPYIYAIGDILEDKVELTPVAI 369
Query: 431 AQGISVVEQVTGRDHV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
G + +++ V ++ ++P FT E GL+E +A EK +E EV
Sbjct: 370 QAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 423
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 178/414 (42%), Gaps = 37/414 (8%)
Query: 92 GDNGIPKSFDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIEGDV---------VGGTCVNR 142
G +PKS+DYD + G K +++ +GGTCVN
Sbjct: 23 GPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV 82
Query: 143 GCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR--QGVADHANNLATKIRNNLTN 200
GC+P K + + + LQ + + +DR + V +H +L R
Sbjct: 83 GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRV---- 138
Query: 201 SMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
+++ V G +GP ++K G + I +A+ +IATG P GI D +
Sbjct: 139 ALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKEYC 197
Query: 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIG-KL 315
I+SD L + P +VG+ Y+ LE + +G +VT + L+ GFD ++ K+
Sbjct: 198 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKI 256
Query: 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL--EVDAALIATGR 373
+ + I + K+ + G P + ++ A++ ++ + E + ++A GR
Sbjct: 257 GEH--MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV-AQSTNSEEIIEGEYNTVMLAIGR 313
Query: 374 APFTNGLGLENINVVT--QRGFVPVDERMRVIDANGNLVPHLYCIGDA-NGKMMLAHAAS 430
T +GLE + V + G +P V D VP++Y IGD K+ L A
Sbjct: 314 DACTRKIGLETVGVKINEKTGKIP------VTDEEQTNVPYIYAIGDILEDKVELTPVAI 367
Query: 431 AQGISVVEQVTGRDHV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
G + +++ V ++ ++P FT E GL+E +A EK +E EV
Sbjct: 368 QAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 421
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 178/414 (42%), Gaps = 37/414 (8%)
Query: 92 GDNGIPKSFDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIEGDV---------VGGTCVNR 142
G +PKS+DYD + G K +++ +GGTCVN
Sbjct: 23 GPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV 82
Query: 143 GCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR--QGVADHANNLATKIRNNLTN 200
GC+P K + + + LQ + + +DR + V +H +L R
Sbjct: 83 GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRV---- 138
Query: 201 SMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
+++ V G +GP ++K G + I +A+ +IATG P GI D +
Sbjct: 139 ALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKEYC 197
Query: 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIG-KL 315
I+SD L + P +VG+ Y+ LE + +G +VT + L+ GFD ++ K+
Sbjct: 198 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKI 256
Query: 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL--EVDAALIATGR 373
+ + I + K+ + G P + ++ A++ ++ + E + ++A GR
Sbjct: 257 GEH--MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV-AQSTNSEEIIEGEYNTVMLAIGR 313
Query: 374 APFTNGLGLENINVVT--QRGFVPVDERMRVIDANGNLVPHLYCIGDA-NGKMMLAHAAS 430
T +GLE + V + G +P V D VP++Y IGD K+ L A
Sbjct: 314 DACTRKIGLETVGVKINEKTGKIP------VTDEEQTNVPYIYAIGDILEDKVELTPVAI 367
Query: 431 AQGISVVEQVTGRDHV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
G + +++ V ++ ++P FT E GL+E +A EK +E EV
Sbjct: 368 QAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 421
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 178/414 (42%), Gaps = 37/414 (8%)
Query: 92 GDNGIPKSFDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIEGDV---------VGGTCVNR 142
G +PKS+DYD + G K +++ +GGTCVN
Sbjct: 17 GPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV 76
Query: 143 GCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR--QGVADHANNLATKIRNNLTN 200
GC+P K + + + LQ + + +DR + V +H +L R
Sbjct: 77 GCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRV---- 132
Query: 201 SMKALGVDILTGVGTILGPQKVKF----GTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
+++ V G +GP ++K G + I +A+ +IATG P GI D +
Sbjct: 133 ALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY-LGIPGDKEYC 191
Query: 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIG-KL 315
I+SD L + P +VG+ Y+ LE + +G +VT + L+ GFD ++ K+
Sbjct: 192 ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKI 250
Query: 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL--EVDAALIATGR 373
+ + I + K+ + G P + ++ A++ ++ + E + ++A GR
Sbjct: 251 GEH--MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVV-AQSTNSEEIIEGEYNTVMLAIGR 307
Query: 374 APFTNGLGLENINVVT--QRGFVPVDERMRVIDANGNLVPHLYCIGDA-NGKMMLAHAAS 430
T +GLE + V + G +P V D VP++Y IGD K+ L A
Sbjct: 308 DACTRKIGLETVGVKINEKTGKIP------VTDEEQTNVPYIYAIGDILEDKVELTPVAI 361
Query: 431 AQGISVVEQVTGRDHV-LNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
G + +++ V ++ ++P FT E GL+E +A EK +E EV
Sbjct: 362 QAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 415
>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|B Chain B, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|C Chain C, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h.
pdb|3IC9|D Chain D, The Structure Of Dihydrolipoamide Dehydrogenase From
Colwellia Psychrerythraea 34h
Length = 492
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 162/388 (41%), Gaps = 25/388 (6%)
Query: 126 KTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA---LGLQVHAAGYDRQG 182
K +IEG G TC GC PSK L+A + + +H G+QV + +
Sbjct: 33 KVVLIEGGAYGTTCARVGCXPSKLLIAAA------DASYHASQTDLFGIQVDRISVNGKA 86
Query: 183 VADHANNLATKIRNNLTNSMKALG-VDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS 241
V + + S+++ D + G L ++ + V AK I+IATGS
Sbjct: 87 VXKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGS 146
Query: 242 VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301
P P+ + G ++T+D+ +L +P +A+ G G IGLE + LG V
Sbjct: 147 RPNYPEFLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRS 206
Query: 302 DQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361
+ D E + A++ D V +T K +E+I K T
Sbjct: 207 GSVANLQDEEXKRYAEKTFNEEFYFDAKARVISTI------EKEDAVEVIYFDKSGQKTT 260
Query: 362 LEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG 421
L ATGR + LGLEN ++ + P+ + + + + V H++ GDAN
Sbjct: 261 ESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTS----VDHIFVAGDANN 316
Query: 422 KMMLAHAASAQGISVVEQVTGRDHVLNHLSIPA---ACFTHPEISMVGLTEPQARE-KAE 477
+ L H A+ G V G V+ A FT P+++ VGL+ Q + A+
Sbjct: 317 TLTLLHEAADDG-KVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYAD 375
Query: 478 KEGFEVSVAKTSFKANTKALAENEGEGL 505
++ V + SF+ ++ + +GL
Sbjct: 376 QDAANYVVGQVSFEGQGRSRVXGKNKGL 403
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/357 (25%), Positives = 158/357 (44%), Gaps = 24/357 (6%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLATKI 194
+GGTCVN GCVP K L+ +G M + + KA G + +D + + + +
Sbjct: 85 IGGTCVNVGCVPKK-LMHYAGHMGSI-FKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSL 142
Query: 195 RNNLTNSMKALGVDILTGVGTILGPQKVKF------GTDNIVTAKDIIIATGSVPFVPKG 248
+ +++ V + G+ + V + + VT K I+IATG P +P
Sbjct: 143 NFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDD 202
Query: 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGF 308
+E + ITSD L+ P +VG+ Y+ LE S +LG +VT + ++ GF
Sbjct: 203 VEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVT-VAVRSIVLRGF 261
Query: 309 DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368
D + + ++ + + + + G+ K+T D + +E D KT E DT+ L
Sbjct: 262 DQQCA-VKVKLYMEEQGVMFKNGILPKKLTKMDD--KILVEFSD-KTSELYDTV-----L 312
Query: 369 IATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDA--NGKMMLA 426
A GR +GL LE++N+ + + ++ + +P ++ +GD N +
Sbjct: 313 YAIGRKGDIDGLNLESLNMNVNKS----NNKIIADHLSCTNIPSIFAVGDVAENVPELAP 368
Query: 427 HAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
A A I D ++++ IP + +T E G +E +A E K EV
Sbjct: 369 VAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEV 425
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 180/412 (43%), Gaps = 70/412 (16%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGV-ADHANNLATK 193
+GGTCVN GCVP K ++ + M L+ G + +DR + A+ N +A K
Sbjct: 47 LGGTCVNVGCVPKKLMVTGAQYMEHLRES---AGFGWE-----FDRTTLRAEWKNLIAVK 98
Query: 194 IRN--NLTNSMKAL-----GVDILTGVGTILGPQ--KVKFGTDNIVTAKD------IIIA 238
N+ S + G++ G G++ V+ D K+ I++A
Sbjct: 99 DEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLA 158
Query: 239 TGSVPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GS 293
+GS P +P GIE I+S+ A L P + VG G+I +EF+ ++ A
Sbjct: 159 SGSWPHMPNIPGIE----HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDG 214
Query: 294 EVTFIEALDQLMPGFDPEI-GKLAQRVLINPRKIDYHTGVFATKITPAK-----DG-KPV 346
+VT + ++ GFD + +L +++ N +I TK PAK DG K V
Sbjct: 215 QVTLCYRGEMILRGFDHTLREELTKQLTANGIQI-------LTKENPAKVELNADGSKSV 267
Query: 347 TIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDAN 406
T E ++ D ++A GR+P T L L+N V+ + G V VDE R +N
Sbjct: 268 TFE--------SGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSN 319
Query: 407 GNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMV 465
+Y IGD ++ML A + ++V+ V G +H + +A F+ P I
Sbjct: 320 ------IYAIGDVTNRVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTC 373
Query: 466 GLTEPQAREKAEKEGFEVS--------VAKTSFKANTKALAENEGEGLAKGV 509
GL E A ++ E +S V+ + +K + N +G GV
Sbjct: 374 GLIEEVASKRYEVVAVYLSSFTPLMHKVSGSKYKTFVAKIITNHSDGTVLGV 425
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 180/412 (43%), Gaps = 70/412 (16%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGV-ADHANNLATK 193
+GGTCVN GCVP K ++ + M L+ G + +DR + A+ N +A K
Sbjct: 48 LGGTCVNVGCVPKKLMVTGAQYMEHLRES---AGFGWE-----FDRTTLRAEWKNLIAVK 99
Query: 194 IRN--NLTNSMKAL-----GVDILTGVGTILGPQ--KVKFGTDNIVTAKD------IIIA 238
N+ S + G++ G G++ V+ D K+ I++A
Sbjct: 100 DEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLA 159
Query: 239 TGSVPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GS 293
+GS P +P GIE I+S+ A L P + VG G+I +EF+ ++ A
Sbjct: 160 SGSWPHMPNIPGIE----HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDG 215
Query: 294 EVTFIEALDQLMPGFDPEI-GKLAQRVLINPRKIDYHTGVFATKITPAK-----DG-KPV 346
+VT + ++ GFD + +L +++ N +I TK PAK DG K V
Sbjct: 216 QVTLCYRGEMILRGFDHTLREELTKQLTANGIQI-------LTKENPAKVELNADGSKSV 268
Query: 347 TIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDAN 406
T E ++ D ++A GR+P T L L+N V+ + G V VDE R +N
Sbjct: 269 TFE--------SGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSN 320
Query: 407 GNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMV 465
+Y IGD ++ML A + ++V+ V G +H + +A F+ P I
Sbjct: 321 ------IYAIGDVTNRVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTC 374
Query: 466 GLTEPQAREKAEKEGFEVS--------VAKTSFKANTKALAENEGEGLAKGV 509
GL E A ++ E +S V+ + +K + N +G GV
Sbjct: 375 GLIEEVASKRYEVVAVYLSSFTPLMHKVSGSKYKTFVAKIITNHSDGTVLGV 426
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 181/412 (43%), Gaps = 70/412 (16%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGV-ADHANNLATK 193
+GGTCVN GCVP K ++ + M EH ++ G +DR + A+ N +A K
Sbjct: 49 LGGTCVNVGCVPKKLMVTGAQYM-----EHLRESAGFGWE---FDRTTLRAEWKNLIAVK 100
Query: 194 IRN--NLTNSMKAL-----GVDILTGVGTILGPQ--KVKFGTDNIVTAKD------IIIA 238
N+ S + G++ G G++ V+ D K+ I++A
Sbjct: 101 DEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLA 160
Query: 239 TGSVPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GS 293
+GS P +P GIE I+S+ A L P + VG G+I +EF+ ++ A
Sbjct: 161 SGSWPHMPNIPGIE----HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDG 216
Query: 294 EVTFIEALDQLMPGFDPEI-GKLAQRVLINPRKIDYHTGVFATKITPAK-----DG-KPV 346
+VT + ++ GFD + +L +++ N +I TK PAK DG K V
Sbjct: 217 QVTLCYRGEMILRGFDHTLREELTKQLTANGIQI-------LTKENPAKVELNADGSKSV 269
Query: 347 TIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDAN 406
T E ++ D ++A GR+P T L L+N V+ + G V VDE R +N
Sbjct: 270 TFE--------SGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSN 321
Query: 407 GNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMV 465
+Y IGD ++ML A + ++V+ V G +H + +A F+ P I
Sbjct: 322 ------IYAIGDVTNRVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTC 375
Query: 466 GLTEPQAREKAEKEGFEVS--------VAKTSFKANTKALAENEGEGLAKGV 509
GL E A ++ E +S V+ + +K + N +G GV
Sbjct: 376 GLIEEVASKRYEVVAVYLSSFTPLMHKVSGSKYKTFVAKIITNHSDGTVLGV 427
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 109/412 (26%), Positives = 181/412 (43%), Gaps = 70/412 (16%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGV-ADHANNLATK 193
+GGTCVN GCVP K ++ + M EH ++ G +DR + A+ +A K
Sbjct: 48 LGGTCVNVGCVPKKLMVTGAQYM-----EHLRESAGFGWE---FDRTTLRAEWKKLIAVK 99
Query: 194 IRN--NLTNSMKAL-----GVDILTGVGTILGPQKVKF--------GTDNIVTAKDIIIA 238
N+ S + + G++ G G++ V + ++I++A
Sbjct: 100 DEAVLNINKSYEEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETENILLA 159
Query: 239 TGSVPFVPK--GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GS 293
+GS P +P GIE I+S+ A L P + VG G+I +EF+ ++ A
Sbjct: 160 SGSWPHMPNIPGIE----HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDG 215
Query: 294 EVTFIEALDQLMPGFDPEI-GKLAQRVLINPRKIDYHTGVFATKITPAK-----DG-KPV 346
+VT + ++ GFD + +L +++ N +I TK PAK DG K V
Sbjct: 216 QVTLCYRGEMILRGFDHTLREELTKQLTANGIQI-------LTKENPAKVELNADGSKSV 268
Query: 347 TIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDAN 406
T E ++ D ++A GR+P T L L+N V+ + G V VDE R +N
Sbjct: 269 TFE--------SGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSN 320
Query: 407 GNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMV 465
+Y IGD ++ML A + ++V+ V G + +H + +A F+ P I
Sbjct: 321 ------IYAIGDVTNRVMLTPVAINEAAALVDTVFGTNPRKTDHTRVASAVFSIPPIGTC 374
Query: 466 GLTEPQAREKAEKEGFEVS--------VAKTSFKANTKALAENEGEGLAKGV 509
GL E A ++ E +S ++ + +K + N +G GV
Sbjct: 375 GLIEEVASKRYEVVAVYLSSFTPLMHNISGSKYKTFVAKIITNHSDGTVLGV 426
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 161/367 (43%), Gaps = 40/367 (10%)
Query: 135 VGGTCVNRGCVPSKAL--LAVSGRMRELQSEHHMKALGLQV-----HAAGYDRQGVADHA 187
+GGTCVN GC+P K + A+ G M ++ HH G +V H + V +H
Sbjct: 49 LGGTCVNVGCIPKKLMHQAALLGGM--IRDAHH---YGWEVAQPVQHNWKTMAEAVQNHV 103
Query: 188 NNLATKIRNNLTN------SMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS 241
+L R L + ++KA VD T G G G +++A+ I+IATG
Sbjct: 104 KSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKG------GKATLLSAEHIVIATGG 157
Query: 242 VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301
P P ++ + ITSD L+ P +VG+ Y+ LE + T +G + T +
Sbjct: 158 RPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS 217
Query: 302 DQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIEL---IDAKTKEP 358
L GFD ++ L ++ H F P+ K T +L +
Sbjct: 218 IPLR-GFDQQMSSLVT------EHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGK 270
Query: 359 KDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGD 418
+DT D L A GR P T L LE + T P ++++ V VPH+Y IGD
Sbjct: 271 EDTGTFDTVLWAIGRVPETRTLNLEKAGISTN----PKNQKIIVDAQEATSVPHIYAIGD 326
Query: 419 -ANGKMMLAHAASAQGISVVEQVTGRDHVL-NHLSIPAACFTHPEISMVGLTEPQAREKA 476
A G+ L A G + +++ G+ L ++ ++P FT E VGL+E +A
Sbjct: 327 VAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALH 386
Query: 477 EKEGFEV 483
+E EV
Sbjct: 387 GQEHVEV 393
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/367 (28%), Positives = 161/367 (43%), Gaps = 40/367 (10%)
Query: 135 VGGTCVNRGCVPSKAL--LAVSGRMRELQSEHHMKALGLQV-----HAAGYDRQGVADHA 187
+GGTCVN GC+P K + A+ G M ++ HH G +V H + V +H
Sbjct: 75 LGGTCVNVGCIPKKLMHQAALLGGM--IRDAHH---YGWEVAQPVQHNWKTMAEAVQNHV 129
Query: 188 NNLATKIRNNLTN------SMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS 241
+L R L + ++KA VD T G G G +++A+ I+IATG
Sbjct: 130 KSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKG------GKATLLSAEHIVIATGG 183
Query: 242 VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301
P P ++ + ITSD L+ P +VG+ Y+ LE + T +G + T +
Sbjct: 184 RPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS 243
Query: 302 DQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIEL---IDAKTKEP 358
L GFD ++ L ++ H F P+ K T +L +
Sbjct: 244 IPLR-GFDQQMSSLVT------EHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGK 296
Query: 359 KDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGD 418
+DT D L A GR P T L LE + T P ++++ V VPH+Y IGD
Sbjct: 297 EDTGTFDTVLWAIGRVPETRTLNLEKAGISTN----PKNQKIIVDAQEATSVPHIYAIGD 352
Query: 419 -ANGKMMLAHAASAQGISVVEQVTGRDHVL-NHLSIPAACFTHPEISMVGLTEPQAREKA 476
A G+ L A G + +++ G+ L ++ ++P FT E VGL+E +A
Sbjct: 353 VAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALH 412
Query: 477 EKEGFEV 483
+E EV
Sbjct: 413 GQEHVEV 419
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 173/416 (41%), Gaps = 80/416 (19%)
Query: 126 KTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVAD 185
K A++E +GGTCVN GCVP K + + L++ H G + ++ + +
Sbjct: 27 KVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHY---GFDTKFS-FNLPLLVE 82
Query: 186 HANNLATKIRNNLTNSMKALGVDILTGVGTILGPQK--VKFGTDN-----------IVTA 232
+ ++ N ++ VD+ G + L + +K DN I+
Sbjct: 83 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEG 142
Query: 233 KDIIIATGSVPFVP--KGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTA 290
++I+IA G+ P P KGIE I+SD ++ I IVGSGYI +E +V
Sbjct: 143 RNILIAVGNKPVFPPVKGIE----NTISSDEFFNIK-ESKKIGIVGSGYIAVELINVIKR 197
Query: 291 LGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAK-DGKPVTIE 349
LG + ++++ FD + + + + +K + + FA + K K ++I
Sbjct: 198 LGIDSYIFARGNRILRKFDESVINVLEN---DMKKNNINIVTFADVVEIKKVSDKNLSIH 254
Query: 350 LIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNL 409
L D + E D + GR+P T L LE +NV T ++ VDE R
Sbjct: 255 LSDGRIYE-----HFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRT------S 303
Query: 410 VPHLYCIGDANGKMMLAHAASAQGISVV------------EQVT---------------- 441
V ++Y +GD M+ + + ++++ E VT
Sbjct: 304 VNNIYAVGDC---CMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINA 360
Query: 442 GR---DHVL-------NHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAK 487
GR D + N+ IP F+HP I +GL+E A + KE ++ +K
Sbjct: 361 GRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESK 416
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/440 (26%), Positives = 184/440 (41%), Gaps = 61/440 (13%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADH------AN 188
+GGTCVN GCVP K ++ + M ++ G ++ DR+ V + A
Sbjct: 47 LGGTCVNVGCVPKKLMVTGANYMDTIRES---AGFGWEL-----DRESVRPNWKALIAAK 98
Query: 189 NLATKIRNNLTNSMKA--LGVDILTGVGTILGPQKV--KFGTD------NIVTAKDIIIA 238
N A N+ M A G+ G G + V + D + + I++A
Sbjct: 99 NKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLA 158
Query: 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDV---YTALGSEV 295
TGS P GIE D ITS+ A L+ P VG GYI +EF+ + Y A G +V
Sbjct: 159 TGSWP-QHLGIEGD-DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQV 216
Query: 296 TFIEALDQLMPGFDPEIGK-LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK 354
D ++ GFD E+ K L +++ N + H K+T DG +
Sbjct: 217 DLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHEN--PAKVTKNADGTRHVV------ 268
Query: 355 TKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHL 413
E + D ++A GR P + L LE V V + G + VD + V ++
Sbjct: 269 -FESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKT------NVDNI 321
Query: 414 YCIGDANGKMMLAHAASAQGISVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQA 472
Y IGD ++ML A +G + V+ V + +H + A F+ P + + G E A
Sbjct: 322 YAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDA 381
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLV 532
+K + +V+V ++SF ++ + + + N A E H S P ++
Sbjct: 382 AKKYD----QVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 437
Query: 533 K----------KLADVYMTF 542
+ K++DVY T
Sbjct: 438 QSVAICLKMGAKISDVYNTI 457
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 111/424 (26%), Positives = 179/424 (42%), Gaps = 51/424 (12%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADH------AN 188
+GGTCVN GCVP K ++ + M ++ G ++ DR+ V + A
Sbjct: 47 LGGTCVNVGCVPKKLMVTGANYMDTIRES---AGFGWEL-----DRESVRPNWKALIAAK 98
Query: 189 NLATKIRNNLTNSMKA--LGVDILTGVGTILGPQKV--KFGTD------NIVTAKDIIIA 238
N A N+ M A G+ G G + V + D + + I++A
Sbjct: 99 NKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLA 158
Query: 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDV---YTALGSEV 295
TGS P GIE D ITS+ A L+ P VG GYI +EF+ + Y A G +V
Sbjct: 159 TGSWP-QHLGIEGD-DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQV 216
Query: 296 TFIEALDQLMPGFDPEIGK-LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK 354
D ++ GFD E+ K L +++ N + H K+T DG +
Sbjct: 217 DLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHEN--PAKVTKNADGTRHVV------ 268
Query: 355 TKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHL 413
E + D ++A GR P + L LE V V + G + VD + V ++
Sbjct: 269 -FESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTN------VDNI 321
Query: 414 YCIGDANGKMMLAHAASAQGISVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQA 472
Y IGD ++ML A +G + V+ V + +H + A F+ P + + G E A
Sbjct: 322 YAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDA 381
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLV 532
+K + +V+V ++SF ++ + + + N A E H S P ++
Sbjct: 382 AKKYD----QVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 437
Query: 533 KKLA 536
+ +A
Sbjct: 438 QSVA 441
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 179/424 (42%), Gaps = 51/424 (12%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADH------AN 188
+GGTCVN GCVP K ++ + M ++ G ++ DR+ V + A
Sbjct: 48 LGGTCVNVGCVPKKLMVTGANYMDTIRES---AGFGWEL-----DRESVRPNWKALIAAK 99
Query: 189 NLATKIRNNLTNSMKA--LGVDILTGVGTILGPQKV--KFGTD------NIVTAKDIIIA 238
N A N+ M A G+ G G + V + D + + I++A
Sbjct: 100 NKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLA 159
Query: 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDV---YTALGSEV 295
TGS P GIE D ITS+ A L+ P VG GYI +EF+ + Y A G +V
Sbjct: 160 TGSWP-QHLGIEGD-DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQV 217
Query: 296 TFIEALDQLMPGFDPEIGK-LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK 354
D ++ GFD E+ K L +++ N + H K+T DG +
Sbjct: 218 DLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHEN--PAKVTKNADGTRHVV------ 269
Query: 355 TKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHL 413
E + D ++A GR P + L L+ V V + G + VD + V ++
Sbjct: 270 -FESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKT------NVDNI 322
Query: 414 YCIGDANGKMMLAHAASAQGISVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQA 472
Y IGD ++ML A +G + V+ V + +H + A F+ P + + G E A
Sbjct: 323 YAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDA 382
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLV 532
+K + +V+V ++SF ++ + + + N A E H S P ++
Sbjct: 383 AKKYD----QVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 438
Query: 533 KKLA 536
+ +A
Sbjct: 439 QSVA 442
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 179/424 (42%), Gaps = 51/424 (12%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADH------AN 188
+GGTCVN GCVP K ++ + M ++ G ++ DR+ V + A
Sbjct: 48 LGGTCVNVGCVPKKLMVTGANYMDTIRES---AGFGWEL-----DRESVRPNWKALIAAK 99
Query: 189 NLATKIRNNLTNSMKA--LGVDILTGVGTILGPQKV--KFGTD------NIVTAKDIIIA 238
N A N+ M A G+ G G + V + D + + I++A
Sbjct: 100 NKAVSGINDSYEGMFADTEGLTFHQGWGALQDNHTVLVRESADPNSAVLETLDTEYILLA 159
Query: 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDV---YTALGSEV 295
TGS P GIE D ITS+ A L+ P VG GYI +EF+ + Y A G +V
Sbjct: 160 TGSWP-QHLGIEGD-DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQV 217
Query: 296 TFIEALDQLMPGFDPEIGK-LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK 354
D ++ GFD E+ K L +++ N + H K+T DG +
Sbjct: 218 DLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHEN--PAKVTKNADGTRHVV------ 269
Query: 355 TKEPKDTLEVDAALIATGRAPFTNGLGLENINV-VTQRGFVPVDERMRVIDANGNLVPHL 413
E + D ++A GR P + L L+ V V + G + VD + V ++
Sbjct: 270 -FESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKT------NVDNI 322
Query: 414 YCIGDANGKMMLAHAASAQGISVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQA 472
Y IGD ++ML A +G + V+ V + +H + A F+ P + + G E A
Sbjct: 323 YAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDA 382
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLV 532
+K + +V+V ++SF ++ + + + N A E H S P ++
Sbjct: 383 AKKYD----QVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 438
Query: 533 KKLA 536
+ +A
Sbjct: 439 QSVA 442
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 157/369 (42%), Gaps = 48/369 (13%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLATKI 194
VGGTCVN GC+P K + H LG VH A V D K+
Sbjct: 49 VGGTCVNVGCIPKKLM-------------HQASLLGEAVHEAAAYGWNVDDKIKPDWHKL 95
Query: 195 RNNLTNSMKALG-----------VDILTGVGTILGPQ----KVKFGTDNIVTAKDIIIAT 239
++ N +K++ V+ + G+G+ + K+K G + +TA+ +IA
Sbjct: 96 VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSG-ERTITAQTFVIAV 154
Query: 240 GS---VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVT 296
G P +P +E ITSD L+ P +VG+GYIGLE + LG E T
Sbjct: 155 GGRPRYPDIPGAVEYG----ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPT 210
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356
+ ++ GFD ++ +L + R I + + DGK + ++ + +T
Sbjct: 211 VM-VRSIVLRGFDQQMAELVAASM-EERGIPFLRKTVPLSVEKQDDGK-LLVKYKNVETG 267
Query: 357 EPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCI 416
E + + D L A GR + L L N V Q+ +PVD + V ++Y +
Sbjct: 268 EESEDV-YDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ------EATNVANIYAV 320
Query: 417 GD-ANGKMMLAHAASAQGISVVEQVT-GRDHVLNHLSIPAACFTHPEISMVGLTEPQARE 474
GD GK L A G + ++ G +++ + FT E + VGL+E A +
Sbjct: 321 GDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVK 380
Query: 475 KAEKEGFEV 483
+ + EV
Sbjct: 381 QFGADEIEV 389
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 157/369 (42%), Gaps = 48/369 (13%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLATKI 194
VGGTCVN GC+P K + H LG VH A V D K+
Sbjct: 53 VGGTCVNVGCIPKKLM-------------HQASLLGEAVHEAAAYGWNVDDKIKPDWHKL 99
Query: 195 RNNLTNSMKALG-----------VDILTGVGTILGPQ----KVKFGTDNIVTAKDIIIAT 239
++ N +K++ V+ + G+G+ + K+K G + +TA+ +IA
Sbjct: 100 VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSG-ERTITAQTFVIAV 158
Query: 240 GS---VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVT 296
G P +P +E ITSD L+ P +VG+GYIGLE + LG E T
Sbjct: 159 GGRPRYPDIPGAVEYG----ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPT 214
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356
+ ++ GFD ++ +L + R I + + DGK + ++ + +T
Sbjct: 215 VM-VRSIVLRGFDQQMAELVAASM-EERGIPFLRKTVPLSVEKQDDGK-LLVKYKNVETG 271
Query: 357 EPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCI 416
E + + D L A GR + L L N V Q+ +PVD + V ++Y +
Sbjct: 272 EESEDV-YDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ------EATNVANIYAV 324
Query: 417 GD-ANGKMMLAHAASAQGISVVEQVT-GRDHVLNHLSIPAACFTHPEISMVGLTEPQARE 474
GD GK L A G + ++ G +++ + FT E + VGL+E A +
Sbjct: 325 GDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVK 384
Query: 475 KAEKEGFEV 483
+ + EV
Sbjct: 385 QFGADEIEV 393
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 157/369 (42%), Gaps = 48/369 (13%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLATKI 194
VGGTCVN GC+P K + H LG VH A V D K+
Sbjct: 53 VGGTCVNVGCIPKKLM-------------HQASLLGEAVHEAAAYGWNVDDKIKPDWHKL 99
Query: 195 RNNLTNSMKALG-----------VDILTGVGTILGPQ----KVKFGTDNIVTAKDIIIAT 239
++ N +K++ V+ + G+G+ + K+K G + +TA+ +IA
Sbjct: 100 VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSG-ERTITAQTFVIAV 158
Query: 240 GS---VPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVT 296
G P +P +E ITSD L+ P +VG+GYIGLE + LG E T
Sbjct: 159 GGRPRYPDIPGAVEYG----ITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPT 214
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356
+ ++ GFD ++ +L + R I + + DGK + ++ + +T
Sbjct: 215 VM-VRSIVLRGFDQQMAELVAASM-EERGIPFLRKTVPLSVEKQDDGK-LLVKYKNVETG 271
Query: 357 EPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCI 416
E + + D L A GR + L L N V Q+ +PVD + V ++Y +
Sbjct: 272 EESEDV-YDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQ------EATNVANIYAV 324
Query: 417 GD-ANGKMMLAHAASAQGISVVEQVT-GRDHVLNHLSIPAACFTHPEISMVGLTEPQARE 474
GD GK L A G + ++ G +++ + FT E + VGL+E A +
Sbjct: 325 GDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVK 384
Query: 475 KAEKEGFEV 483
+ + EV
Sbjct: 385 QFGADEIEV 393
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 167/410 (40%), Gaps = 41/410 (10%)
Query: 100 FDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIE-------GDV--VGGTCVNRGCVPSKAL 150
+DYD + G KTA+++ G +GGTCVN GC+P K +
Sbjct: 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLM 165
Query: 151 LAVSGRMRELQ-SEHHMKALGLQ--VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGV 207
L+ +EH +L H +GV H +L + L ++ V
Sbjct: 166 HQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQ----V 221
Query: 208 DILTGVGTILGPQKVKFGTDN----IVTAKDIIIATGSVPFVPKGIEVDGKTV--ITSDH 261
L G ++ P +V+ N +T II+ATG P P E+ G ITSD
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP---EIPGAVEYGITSDD 278
Query: 262 ALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPE----IGKLAQ 317
L + P ++G+ Y+ LE + +LG +VT + L+ GFD + +G +
Sbjct: 279 LFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYME 337
Query: 318 RVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377
+ K+ + K+ ++ KP + + T K E + + A GR P
Sbjct: 338 NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL 397
Query: 378 NGLGLENINVVTQRGFVPVDERMRVI--DANGNLVPHLYCIGDAN-GKMMLAHAASAQGI 434
+ + E + V +D+ RV+ D V ++Y IGD N GK L A G
Sbjct: 398 SKVLCETVG-------VKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGR 450
Query: 435 SVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
+ ++ G + ++ ++ FT E GL+E A EK + EV
Sbjct: 451 YLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEV 500
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 167/410 (40%), Gaps = 41/410 (10%)
Query: 100 FDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIE-------GDV--VGGTCVNRGCVPSKAL 150
+DYD + G KTA+++ G +GGTCVN GC+P K +
Sbjct: 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLM 165
Query: 151 LAVSGRMRELQ-SEHHMKALGLQ--VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGV 207
L+ +EH +L H +GV H +L + L ++ V
Sbjct: 166 HQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQ----V 221
Query: 208 DILTGVGTILGPQKVKFGTDN----IVTAKDIIIATGSVPFVPKGIEVDGKTV--ITSDH 261
L G ++ P +V+ N +T II+ATG P P E+ G ITSD
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP---EIPGAVEYGITSDD 278
Query: 262 ALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPE----IGKLAQ 317
L + P ++G+ Y+ LE + +LG +VT + L+ GFD + +G +
Sbjct: 279 LFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYME 337
Query: 318 RVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377
+ K+ + K+ ++ KP + + T K E + + A GR P
Sbjct: 338 NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL 397
Query: 378 NGLGLENINVVTQRGFVPVDERMRVI--DANGNLVPHLYCIGDAN-GKMMLAHAASAQGI 434
+ + E + V +D+ RV+ D V ++Y IGD N GK L A G
Sbjct: 398 SKVLCETVG-------VKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGR 450
Query: 435 SVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
+ ++ G + ++ ++ FT E GL+E A EK + EV
Sbjct: 451 YLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEV 500
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 167/410 (40%), Gaps = 41/410 (10%)
Query: 100 FDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIE-------GDV--VGGTCVNRGCVPSKAL 150
+DYD + G KTA+++ G +GGTCVN GC+P K +
Sbjct: 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLM 165
Query: 151 LAVSGRMRELQ-SEHHMKALGLQ--VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGV 207
L+ +EH +L H +GV H +L + L ++ V
Sbjct: 166 HQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQ----V 221
Query: 208 DILTGVGTILGPQKVKFGTDN----IVTAKDIIIATGSVPFVPKGIEVDGKTV--ITSDH 261
L G ++ P +V+ N +T II+ATG P P E+ G ITSD
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYP---EIPGAVEYGITSDD 278
Query: 262 ALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPE----IGKLAQ 317
L + P ++G+ Y+ LE + +LG +VT + L+ GFD + +G +
Sbjct: 279 LFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYME 337
Query: 318 RVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377
+ K+ + K+ ++ KP + + T K E + + A GR P
Sbjct: 338 NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL 397
Query: 378 NGLGLENINVVTQRGFVPVDERMRVI--DANGNLVPHLYCIGDAN-GKMMLAHAASAQGI 434
+ + E + V +D+ RV+ D V ++Y IGD N GK L A G
Sbjct: 398 SKVLCETVG-------VKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGR 450
Query: 435 SVVEQV-TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEV 483
+ ++ G + ++ ++ FT E GL+E A EK + EV
Sbjct: 451 YLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEV 500
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 168/388 (43%), Gaps = 45/388 (11%)
Query: 135 VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANNLATKI 194
+GG C+ GCVPSK + V L + ++K + L DR+ D+ L +
Sbjct: 39 LGGNCLYSGCVPSKTVREVIQTAWRLTNIANVK-IPLDFSTVQ-DRK---DYVQEL--RF 91
Query: 195 RNNLTNSMKALGVDILTGVGTILGPQKVKFGTDN----IVTAKDIIIATG--SVPFVPKG 248
+ + N + + G I P V TD + +IIA+G + G
Sbjct: 92 KQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPG 151
Query: 249 IEVDGKTVITSDHAL--KLEF--VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304
+E +TSD K F +P + I+G+GYIGLE + ++ +G + IE LD+
Sbjct: 152 VEY----CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRA 207
Query: 305 MPGFDPE--IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362
+ + + + L + +N + F + +T K K E+I + K ++
Sbjct: 208 LITLEDQDIVNTLLSILKLNIK--------FNSPVTEVKKIKDDEYEVIYSTKDGSKKSI 259
Query: 363 EVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGK 422
++ ++A GR P G I + + + VDE M+ +P+++ GDANG
Sbjct: 260 FTNSVVLAAGRRPVIPE-GAREIGLSISKTGIVVDETMK------TNIPNVFATGDANGL 312
Query: 423 MMLAHAASAQGISVVEQVTGRDHVLNHL---SIPAACFTHPEISMVGLTEPQAREKAEKE 479
HAA I+ + ++++ SIP +T P +S VG+ +AR K
Sbjct: 313 APYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKAR----KM 368
Query: 480 GFEVSVAKTSFKANTKALAENEGEGLAK 507
G E+ A+ + + + A + EG+ K
Sbjct: 369 GIEIVEAEYNMEEDVSAQIYGQKEGVLK 396
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 36/214 (16%)
Query: 220 QKVKFGTDNIVTAKDIIIATGSVPFVP--KGIEVDGKTVITS-DHALKLEFVPDWIA--- 273
+ ++ G + +++A GS P +G+++ G T +T+ D A EFV I+
Sbjct: 102 ENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEA---EFVQHAISAGE 158
Query: 274 -----IVGSGYIGLEFS-DVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327
IVG G+IGLE + + G + T +E DQ+MPGF + R + +
Sbjct: 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVV 218
Query: 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN---GLGLEN 384
HTG ++ ++GK A+ K TL+ D ++A G +P T GLE
Sbjct: 219 VHTGEKVVRLE-GENGKV-------ARVITDKRTLDADLVILAAGVSPNTQLARDAGLE- 269
Query: 385 INVVTQRGFVPVDERMRVIDANGNLVPHLYCIGD 418
+ RG + VD RMR D P ++ GD
Sbjct: 270 ---LDPRGAIIVDTRMRTSD------PDIFAGGD 294
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 26/253 (10%)
Query: 235 IIIATGSVPFVPK--GIEVDG----KTVITSDHALK-LEF--VPDWIAIVGSGYIGLEFS 285
++IATG P +P+ G ++ G KT+ ++ LK LE V D + I+G G IGLE +
Sbjct: 144 LLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVED-VTIIGGGAIGLEMA 202
Query: 286 DVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP 345
+ + LG +V IE D + +D G +A+ + K +H + + A G
Sbjct: 203 ETFVELGKKVRMIERNDHIGTIYD---GDMAEYIYKEADK--HHIEILTNENVKAFKGN- 256
Query: 346 VTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRV--- 402
E ++A + K T + D L++ G P T+ L NI +G + V+ M+
Sbjct: 257 ---ERVEA-VETDKGTYKADLVLVSVGVKPNTDFLEGTNIR-TNHKGAIEVNAYMQTNVQ 311
Query: 403 -IDANGNLVPHLYCIGDANGKMMLAHAASAQG-ISVVEQVTGRDHVLNHLSIPAACFTHP 460
+ A G+ H + I + + + + A+ QG ++ + + R L F +
Sbjct: 312 DVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNL 371
Query: 461 EISMVGLTEPQAR 473
++ GL E +A+
Sbjct: 372 TLARTGLNEKEAK 384
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 59/304 (19%)
Query: 225 GTDNIVTAKDIIIATGSVPFVP--KGIEVDGKTVITSDHALKLEFVPDW----------- 271
G +++ T +I ATGS P +P KG E+ ++ L+FV +
Sbjct: 131 GKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLE 190
Query: 272 ------IAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPR 324
+A+VG+GYIG+E ++ + G EV I+ +D + G +D ++ L + N
Sbjct: 191 NKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAK---NME 247
Query: 325 KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLEN 384
+ T A +GK K K+ +VD ++A G P T LG
Sbjct: 248 EHGIQLAFGETVKEVAGNGKV-------EKIITDKNEYDVDMVILAVGFRPNTT-LGNGK 299
Query: 385 INVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDA----------NGKMMLAHAASAQGI 434
I++ F+ V++R +P +Y IGD + LA A GI
Sbjct: 300 IDLFRNGAFL-VNKRQET------SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGI 352
Query: 435 SVVEQVTGRDHVLNHLSIPAACFTHPEISMVGL---TEPQAREKAEKEGFEVSVAKTSFK 491
G D L + + + IS+ GL + EKA++ GF+ +V T +
Sbjct: 353 VAAHNACGTD--LEGIGVQGS----NGISIYGLHMVSTGLTLEKAKRLGFDAAV--TEYT 404
Query: 492 ANTK 495
N K
Sbjct: 405 DNQK 408
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 59/304 (19%)
Query: 225 GTDNIVTAKDIIIATGSVPFVP--KGIEVDGKTVITSDHALKLEFVPDW----------- 271
G +++ T +I ATGS P +P KG E+ ++ L+FV +
Sbjct: 131 GKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLE 190
Query: 272 ------IAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPR 324
+A+VG+GYIG+E ++ + G EV I+ +D + G +D ++ L + N
Sbjct: 191 NKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAK---NME 247
Query: 325 KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLEN 384
+ T A +GK K K+ +VD ++A G P T LG
Sbjct: 248 EHGIQLAFGETVKEVAGNGKV-------EKIITDKNEYDVDMVILAVGFRPNTT-LGNGK 299
Query: 385 INVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDA----------NGKMMLAHAASAQGI 434
I++ F+ V++R +P +Y IGD + LA A GI
Sbjct: 300 IDLFRNGAFL-VNKRQET------SIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGI 352
Query: 435 SVVEQVTGRDHVLNHLSIPAACFTHPEISMVGL---TEPQAREKAEKEGFEVSVAKTSFK 491
G D L + + + IS+ GL + EKA++ GF+ +V T +
Sbjct: 353 VAAHNACGTD--LEGIGVQGS----NGISIYGLHMVSTGLTLEKAKRLGFDAAV--TEYT 404
Query: 492 ANTK 495
N K
Sbjct: 405 DNQK 408
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 26/253 (10%)
Query: 235 IIIATGSVPFVPK--GIEVDG----KTVITSDHALK-LEF--VPDWIAIVGSGYIGLEFS 285
++IATG P P+ G ++ G KT+ ++ LK LE V D + I+G G IGLE +
Sbjct: 144 LLIATGVRPVXPEWEGRDLQGVHLLKTIPDAERILKTLETNKVED-VTIIGGGAIGLEXA 202
Query: 286 DVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP 345
+ + LG +V IE D + +D G A+ + K +H + + A G
Sbjct: 203 ETFVELGKKVRXIERNDHIGTIYD---GDXAEYIYKEADK--HHIEILTNENVKAFKGN- 256
Query: 346 VTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRV--- 402
E ++A + K T + D L++ G P T+ L NI +G + V+ +
Sbjct: 257 ---ERVEA-VETDKGTYKADLVLVSVGVKPNTDFLEGTNIR-TNHKGAIEVNAYXQTNVQ 311
Query: 403 -IDANGNLVPHLYCIGDANGKMMLAHAASAQG-ISVVEQVTGRDHVLNHLSIPAACFTHP 460
+ A G+ H + I + + + + A+ QG ++ + + R L F +
Sbjct: 312 DVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNXLDKRRAFKGTLGTGIIKFXNL 371
Query: 461 EISMVGLTEPQAR 473
++ GL E +A+
Sbjct: 372 TLARTGLNEKEAK 384
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 26/254 (10%)
Query: 229 IVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHAL---KLEFVP-DWIAIVGSGYIGLEF 284
+ AK++I+A G+ P V+ K V DHA +L++ P + +VG +E+
Sbjct: 172 VFKAKNLILAVGAGPGTLDVPGVNAKGVF--DHATLVEELDYEPGSTVVVVGGSKTAVEY 229
Query: 285 SDVYTALGSEVTFIEALDQLMPGFDPEI-GKLAQRVLINPRKIDYHTGVFATKITPAKDG 343
+ A G + + L D E + R + + ++ +G T+I +G
Sbjct: 230 GCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDR--MKEQGMEIISGSNVTRIEEDANG 287
Query: 344 KPVTIELIDAKTKEPKDTLEVDAALIATGRAP----FTNGLGLENINVVTQRGFVPVDER 399
+ ++ + A T + +E D + G P LGL+ + +G V V+E
Sbjct: 288 R---VQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLD----LGPKGEVLVNEY 340
Query: 400 MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTH 459
++ VP++Y +GD G M A G V G + P TH
Sbjct: 341 LQTS------VPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTH 394
Query: 460 PEISMVGLTEPQAR 473
E+S +G+ E +AR
Sbjct: 395 YEVSFLGMGEEEAR 408
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 37/199 (18%)
Query: 235 IIIATGSVPFVPK--GIEVDGKTVITSDHALKLEFVPDWI--------AIVGSGYIGLEF 284
+I++ G+ P VP GIE + K + T + + + +I ++G G+IG+E
Sbjct: 144 LILSPGAKPIVPSIPGIE-EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEX 202
Query: 285 SDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPR-KIDYHTGVFATKITPAKDG 343
+ G EVT +E +Q+ P D E N ++ + GV A + ++G
Sbjct: 203 VENLRERGIEVTLVEXANQVXPPIDYEXAAYVHEHXKNHDVELVFEDGVDALE----ENG 258
Query: 344 KPVTIELIDAKTKEPKDTLEVDAALIATGRAP---FTNGLGLENINVVTQRGFVPVDERM 400
V + + ++ D ++A G P G GL + RG + V+E+
Sbjct: 259 AVVRL--------KSGSVIQTDXLILAIGVQPESSLAKGAGL----ALGVRGTIKVNEKF 306
Query: 401 RVIDANGNLVPHLYCIGDA 419
+ D PH+Y IGDA
Sbjct: 307 QTSD------PHIYAIGDA 319
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 235 IIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDW--------------IAIVGSGYI 280
++++ G+ P VP VD H+L+ +PD +VG G+I
Sbjct: 109 LLLSPGAAPIVPPIPGVDNPLT----HSLR--NIPDMDRILQTIQMNNVEHATVVGGGFI 162
Query: 281 GLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKIT-- 338
GLE + LG + T +E DQ+M D E+ A + I + +D G ++++
Sbjct: 163 GLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQA-IRDQGVDLRLGTALSEVSYQ 221
Query: 339 ---------PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT 389
+D I+ + T + LE D ++A G P T L + +
Sbjct: 222 VQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQ-LARDAGLAIG 280
Query: 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDA 419
+ G + V+ M+ D P +Y +GDA
Sbjct: 281 ELGGIKVNAMMQTSD------PAIYAVGDA 304
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 41/246 (16%)
Query: 194 IRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKD-------IIIATGSVPF- 244
+R M++ GV++ + T + P++ + ++V+ ++ +II+ G+VPF
Sbjct: 58 VRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE 117
Query: 245 --VPKGIEVDGKTVITSDH-ALKLE---FVPDW--IAIVGSGYIGLEFSDVYTALGSEVT 296
+P G ++D ++ A+KL+ P+ + ++GSGYIG+E ++ + G +VT
Sbjct: 118 LDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356
I+ LD+ + + + K VL + A IT A G+ V D + +
Sbjct: 177 VIDILDRPLGVY---LDKEFTDVLTEEME--------ANNITIAT-GETVERYEGDGRVQ 224
Query: 357 E---PKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413
+ K+ + D ++A G P N L+ + G + DE MR + P +
Sbjct: 225 KVVTDKNAYDADLVVVAVGVRP--NTAWLKGTLELHPNGLIKTDEYMRTSE------PDV 276
Query: 414 YCIGDA 419
+ +GDA
Sbjct: 277 FAVGDA 282
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 41/246 (16%)
Query: 194 IRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKD-------IIIATGSVPF- 244
+R M++ GV++ + T + P++ + ++V+ ++ +II+ G+VPF
Sbjct: 58 VRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE 117
Query: 245 --VPKGIEVDGKTVITSDH-ALKLE---FVPDW--IAIVGSGYIGLEFSDVYTALGSEVT 296
+P G ++D ++ A+KL+ P+ + ++GSGYIG+E ++ + G +VT
Sbjct: 118 LDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356
I+ LD+ + + + K VL + A IT A G+ V D + +
Sbjct: 177 VIDILDRPLGVY---LDKEFTDVLTEEME--------ANNITIAT-GETVERYEGDGRVQ 224
Query: 357 E---PKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413
+ K+ + D ++A G P N L+ + G + DE MR + P +
Sbjct: 225 KVVTDKNAYDADLVVVAVGVRP--NTAWLKGTLELHPNGLIKTDEYMRTSE------PDV 276
Query: 414 YCIGDA 419
+ +GDA
Sbjct: 277 FAVGDA 282
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 41/246 (16%)
Query: 194 IRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKD-------IIIATGSVPF- 244
+R M++ GV++ + T + P++ + ++V+ ++ +II+ G+VPF
Sbjct: 58 VRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE 117
Query: 245 --VPKGIEVDGKTVITSDH-ALKLE---FVPDW--IAIVGSGYIGLEFSDVYTALGSEVT 296
+P G ++D ++ A+KL+ P+ + ++GSGYIG+E ++ + G +VT
Sbjct: 118 LDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356
I+ LD+ + + + K VL + A IT A G+ V D + +
Sbjct: 177 VIDILDRPLGVY---LDKEFTDVLTEEME--------ANNITIAT-GETVERYEGDGRVQ 224
Query: 357 E---PKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413
+ K+ + D ++A G P N L+ + G + DE MR + P +
Sbjct: 225 KVVTDKNAYDADLVVVAVGVRP--NTAWLKGTLELHPNGLIKTDEYMRTSE------PDV 276
Query: 414 YCIGDA 419
+ +GDA
Sbjct: 277 FAVGDA 282
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 41/246 (16%)
Query: 194 IRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKD-------IIIATGSVPF- 244
+R M++ GV++ + T + P++ + ++V+ ++ +II+ G+VPF
Sbjct: 58 VRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE 117
Query: 245 --VPKGIEVDGKTVITSDH-ALKLE---FVPDW--IAIVGSGYIGLEFSDVYTALGSEVT 296
+P G ++D ++ A+KL+ P+ + ++GSGYIG+E ++ + G +VT
Sbjct: 118 LDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356
I+ LD+ + + + K VL + A IT A G+ V D + +
Sbjct: 177 VIDILDRPLGVY---LDKEFTDVLTEEME--------ANNITIAT-GETVERYEGDGRVQ 224
Query: 357 E---PKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413
+ K+ + D ++A G P N L+ + G + DE MR + P +
Sbjct: 225 KVVTDKNAYDADLVVVAVGVRP--NTAWLKGTLELHPNGLIKTDEYMRTSE------PDV 276
Query: 414 YCIGDA 419
+ +GDA
Sbjct: 277 FAVGDA 282
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 114/246 (46%), Gaps = 41/246 (16%)
Query: 194 IRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKD-------IIIATGSVPF- 244
+R M++ GV++ + T + P++ + ++V+ ++ +II+ G+VPF
Sbjct: 58 VRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE 117
Query: 245 --VPKGIEVDGKTVITSDH-ALKLE---FVPDW--IAIVGSGYIGLEFSDVYTALGSEVT 296
+P G ++D ++ A+KL+ P+ + ++GSGYIG+E ++ + G +VT
Sbjct: 118 LDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAK---DGKPVTIELIDA 353
I+ LD+ + + + K VL +++ + AT T + DG+
Sbjct: 177 VIDILDRPLGVY---LDKEFTDVLT--EEMEANNITIATGETVERYEGDGRV-------Q 224
Query: 354 KTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413
K K+ + D ++A G P N L+ + G + DE MR + P +
Sbjct: 225 KVVTDKNAYDADLVVVAVGVRP--NTAWLKGTLELHPNGLIKTDEYMRTSE------PDV 276
Query: 414 YCIGDA 419
+ +GDA
Sbjct: 277 FAVGDA 282
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 114/246 (46%), Gaps = 41/246 (16%)
Query: 194 IRNNLTNSMKALGVDILTGVG-TILGPQKVKFGTDNIVTAKD-------IIIATGSVPF- 244
+R M++ GV++ + T + P++ + ++V+ ++ +II+ G+VPF
Sbjct: 58 VRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE 117
Query: 245 --VPKGIEVDGKTVITSDH-ALKLE---FVPDW--IAIVGSGYIGLEFSDVYTALGSEVT 296
+P G ++D ++ A+KL+ P+ + ++GSGYIG+E ++ + G +VT
Sbjct: 118 LDIP-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 297 FIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAK---DGKPVTIELIDA 353
I+ LD+ + + + K VL +++ + AT T + DG+
Sbjct: 177 VIDILDRPLGVY---LDKEFTDVLT--EEMEANNITIATGETVERYEGDGRV-------Q 224
Query: 354 KTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHL 413
K K+ + D ++A G P N L+ + G + DE MR + P +
Sbjct: 225 KVVTDKNAYDADLVVVAVGVRP--NTAWLKGTLELHPNGLIKTDEYMRTSE------PDV 276
Query: 414 YCIGDA 419
+ +GDA
Sbjct: 277 FAVGDA 282
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 103/263 (39%), Gaps = 52/263 (19%)
Query: 184 ADHANNLATKIRNNL-TNSMKAL--GVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATG 240
ADHA N A KIR + S+K G DI T D+ AK +II TG
Sbjct: 79 ADHAANYA-KIREGVEVRSIKKTQGGFDIET--------------NDDTYHAKYVIITTG 123
Query: 241 SVPFVPKGIEVDGKT---------VITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL 291
+ K + V G++ T D L F + +G G G + +
Sbjct: 124 TTH---KHLGVKGESEYFGKGTSYCSTCDGYL---FKGKRVVTIGGGNSGAIAAISMSEY 177
Query: 292 GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVT-IEL 350
VT IE MP + E + + I R I Y T+I DGK VT ++
Sbjct: 178 VKNVTIIE----YMPKYMCENAYVQE---IKKRNIPYIMNAQVTEIVG--DGKKVTGVKY 228
Query: 351 IDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLV 410
D T E K +E D I G P T+ L + + +RG++ VD R R V
Sbjct: 229 KDRTTGEEK-LIETDGVFIYVGLIPQTSFLKDSGVK-LDERGYIVVDSRQR------TSV 280
Query: 411 PHLYCIGDANGKMMLAHAASAQG 433
P +Y GD A ASA G
Sbjct: 281 PGVYAAGDVTSG-NFAQIASAVG 302
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 92/214 (42%), Gaps = 30/214 (14%)
Query: 235 IIIATGSVPFVPKGIEVDGKTVI---TSDHALKL-EFVPD--WIAIVGSGYIGLEFSDVY 288
+I+ TGS P VP +D V + A KL E P I I+GSGYIG E ++ Y
Sbjct: 109 LIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAY 168
Query: 289 TALGSEVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKIDYHTG----VFATKITPAKDG 343
+ V I+ ++ L FD E + + DY V +K+ ++
Sbjct: 169 SNQNYNVNLIDGHERVLYKYFDKEFTDILAK--------DYEAHGVNLVLGSKVAAFEE- 219
Query: 344 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERM--- 400
V E+I KT + K+ ++ D A++ G P N L+ + G + DE M
Sbjct: 220 --VDDEII-TKTLDGKE-IKSDIAILCIGFRP--NTELLKGKVAMLDNGAIITDEYMHSS 273
Query: 401 -RVIDANGNLVPHLYCIGDANGKMMLAHAASAQG 433
R I A G+ Y ++N + LA A QG
Sbjct: 274 NRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQG 307
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 218 GPQKVKFGTDNIVTAKDIIIATGSVPF-VPKGIEVDGKTVI-----TSDHALKLEFVPD- 270
G Q++ G + V +D+++A G+ P VP +E D + + D+A +
Sbjct: 89 GHQRIWIGEEE-VRYRDLVLAWGAEPIRVP--VEGDAQDALYPINDLEDYARFRQAAAGK 145
Query: 271 -WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYH 329
+ ++G+G IG EF++ ++ G ++ + +Q+MPG A + + + +H
Sbjct: 146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFH 205
Query: 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP-----FTNGLGLEN 384
G + A +G + L D + + D + A G P F GL +
Sbjct: 206 LGPVLASLKKAGEG--LEAHLSDG------EVIPCDLVVSAVGLRPRTELAFAAGLAV-- 255
Query: 385 INVVTQRGFVPVDERMRVIDANGNLVPHLYCIGD 418
RG V VD +R AN +Y +GD
Sbjct: 256 -----NRGIV-VDRSLRTSHAN------IYALGD 277
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 222 VKFGTDNIVTAKDIIIATGSVP--FVPKGIEVDG-KTVITSDHALKLEFVPDWIA----I 274
VK G + + +I ATG P G ++ G V T + A +L D A +
Sbjct: 98 VKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVV 157
Query: 275 VGSGYIGLEFSDVYTALGSEVTFIEALDQLM 305
+G GYIGLE + V T G VT +EAL +++
Sbjct: 158 IGGGYIGLEAAAVLTKFGVNVTLLEALPRVL 188
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 28/153 (18%)
Query: 272 IAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRK----I 326
+ ++G+G+IGLEF+ A G EV +E ++M PEI + R I
Sbjct: 145 VVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISS-----YFHDRHSGAGI 199
Query: 327 DYHTGVFATKITPAKDGKPVT-IELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENI 385
H GV AT+I A +G VT + L D +TL D ++ G P + +
Sbjct: 200 RMHYGVRATEI--AAEGDRVTGVVLSDG------NTLPCDLVVVGVGVIP---NVEIAAA 248
Query: 386 NVVTQRGFVPVDERMRVIDANGNLVPHLYCIGD 418
+ + VD+++ D PH+ IGD
Sbjct: 249 AGLPTAAGIIVDQQLLTSD------PHISAIGD 275
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 36/190 (18%)
Query: 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL--INPRKID 327
D + +VG+GY+ LE + G T I D++ D ++ Q +L ++ R+I
Sbjct: 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMN---QPILDELDKREIP 204
Query: 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV 387
Y I +G +T + + E D +I G N +E+ N+
Sbjct: 205 YRLNEEINAI----NGNEITFK---SGKVEHYD-------MIIEGVGTHPNSKFIESSNI 250
Query: 388 -VTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN----------GKMMLAHAASAQGISV 436
+ ++GF+PV+++ VP++Y IGD + LA A V
Sbjct: 251 KLDRKGFIPVNDKFET------NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIV 304
Query: 437 VEQVTGRDHV 446
EQ+ G D +
Sbjct: 305 AEQIAGNDTI 314
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 46/195 (23%)
Query: 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL--INPRKID 327
D + +VG+GY+ LE + G T I D++ D ++ Q +L ++ R+I
Sbjct: 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMN---QPILDELDKREIP 204
Query: 328 YH-----TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGL 382
Y + +IT K GK +E D +I G N +
Sbjct: 205 YRLNEEINAINGNEIT-FKSGK---VEHYD---------------MIIEGVGTHPNSKFI 245
Query: 383 ENINV-VTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN----------GKMMLAHAASA 431
E+ N+ + ++GF+PV+++ VP++Y IGD + LA A
Sbjct: 246 ESSNIKLDRKGFIPVNDKFET------NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHR 299
Query: 432 QGISVVEQVTGRDHV 446
V EQ+ G D +
Sbjct: 300 AASIVAEQIAGNDTI 314
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 36/190 (18%)
Query: 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL--INPRKID 327
D + +VG+GY+ LE + G T I D++ D ++ Q +L ++ R+I
Sbjct: 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMN---QPILDELDKREIP 204
Query: 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV 387
Y I +G +T + + E D +I G N +E+ N+
Sbjct: 205 YRLNEEINAI----NGNEITFK---SGKVEHYD-------MIIEGVGTHPNSKFIESSNI 250
Query: 388 -VTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN----------GKMMLAHAASAQGISV 436
+ ++GF+PV+++ VP++Y IGD + LA A V
Sbjct: 251 KLDRKGFIPVNDKFET------NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIV 304
Query: 437 VEQVTGRDHV 446
EQ+ G D +
Sbjct: 305 AEQIAGNDTI 314
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 36/190 (18%)
Query: 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL--INPRKID 327
D + +VG+GY+ LE + G T I D++ D ++ Q +L ++ R+I
Sbjct: 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMN---QPILDELDKREIP 204
Query: 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV 387
Y I +G +T + + E D +I G N +E+ N+
Sbjct: 205 YRLNEEINAI----NGNEITFK---SGKVEHYD-------MIIEGVGTHPNSKFIESSNI 250
Query: 388 -VTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN----------GKMMLAHAASAQGISV 436
+ ++GF+PV+++ VP++Y IGD + LA A V
Sbjct: 251 KLDRKGFIPVNDKFET------NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIV 304
Query: 437 VEQVTGRDHV 446
EQ+ G D +
Sbjct: 305 AEQIAGNDTI 314
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 36/190 (18%)
Query: 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL--INPRKID 327
D + +VG+GY+ LE + G T I D++ D ++ Q +L ++ R+I
Sbjct: 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMN---QPILDELDKREIP 204
Query: 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINV 387
Y I +G +T + + E D +I G N +E+ N+
Sbjct: 205 YRLNEEINAI----NGNEITFK---SGKVEHYD-------MIIEGVGTHPNSKFIESSNI 250
Query: 388 -VTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN----------GKMMLAHAASAQGISV 436
+ ++GF+PV+++ VP++Y IGD + LA A V
Sbjct: 251 KLDRKGFIPVNDKFET------NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIV 304
Query: 437 VEQVTGRDHV 446
EQ+ G D +
Sbjct: 305 AEQIAGNDTI 314
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 46/195 (23%)
Query: 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL--INPRKID 327
D + +VG+GY+ LE + G T I D++ D ++ Q +L ++ R+I
Sbjct: 148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMN---QPILDELDKREIP 204
Query: 328 YH-----TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGL 382
Y + +IT K GK +E D +I G N +
Sbjct: 205 YRLNEEINAINGNEIT-FKSGK---VEHYD---------------MIIEGVGTHPNSKFI 245
Query: 383 ENINV-VTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN----------GKMMLAHAASA 431
E+ N+ + ++GF+PV+++ VP++Y IGD + LA A
Sbjct: 246 ESSNIKLDRKGFIPVNDKFET------NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHR 299
Query: 432 QGISVVEQVTGRDHV 446
V EQ+ G D +
Sbjct: 300 AASIVAEQIAGNDTI 314
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 46/195 (23%)
Query: 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL--INPRKID 327
D + +VG+GY+ LE + G T I D++ D ++ Q +L ++ R+I
Sbjct: 149 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMN---QPILDELDKREIP 205
Query: 328 YH-----TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGL 382
Y + +IT K GK +E D +I G N +
Sbjct: 206 YRLNEEINAINGNEIT-FKSGK---VEHYD---------------MIIEGVGTHPNSKFI 246
Query: 383 ENINV-VTQRGFVPVDERMRVIDANGNLVPHLYCIGDAN----------GKMMLAHAASA 431
E+ N+ + ++GF+PV+++ VP++Y IGD + LA A
Sbjct: 247 ESSNIKLDRKGFIPVNDKFET------NVPNIYAIGDIATSHYRHVDLPASVPLAWGAHR 300
Query: 432 QGISVVEQVTGRDHV 446
V EQ+ G D +
Sbjct: 301 AASIVAEQIAGNDTI 315
>pdb|3DRW|A Chain A, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
pdb|3DRW|B Chain B, Crystal Structure Of A Phosphofructokinase From Pyrococcus
Horikoshii Ot3 With Amp
Length = 474
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 277 SGYIGLEFSDVYTALGSEVTFIEALDQ-----LMPGFDPEIGKLAQRVLINPRKIDYHTG 331
G++ E +YTA + + I L+Q L+ FDP+ ++ +R+ PR+I+
Sbjct: 20 QGHMIPEHLSIYTAYNANIAAIVKLNQETIQNLINAFDPD--EVKRRIEEYPREINEPID 77
Query: 332 VFATKITPAKDGKPVTIELIDAKTKEPKD-TLEVDAALIATGRAPFTNGL-GLENINVVT 389
A + K GKP + L++ K E D T + + N L GL+ V+
Sbjct: 78 FVARLVHTLKLGKPAAVPLVNEKMNEWFDKTFRYEEERLGGQAGIIANTLAGLKIRKVIA 137
Query: 390 QRGFVPVDERMRVIDANGNLVP 411
F+P +R+ + G L P
Sbjct: 138 YTPFLP--KRLAELFKKGVLYP 157
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 350
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR------APFTNGLGLENINVVTQRGF 393
AK+ V+ E+ID +T P D + ++I TGR AP T G E + V + F
Sbjct: 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECF 300
Query: 394 VPVDERMRVIDANGNLVPHLY 414
+ ++ + + PH++
Sbjct: 301 LNLEAPISRVCGYDTPFPHIF 321
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 342
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR------APFTNGLGLENINVVTQRGF 393
AK+ V+ E+ID +T P D + ++I TGR AP T G E + V + F
Sbjct: 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECF 300
Query: 394 VPVDERMRVIDANGNLVPHLY 414
+ ++ + + PH++
Sbjct: 301 LNLEAPISRVCGYDTPFPHIF 321
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR------APFTNGLGLENINVVTQRGF 393
AK+ V+ E+ID +T P D + ++I TGR AP T G E + V + F
Sbjct: 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECF 300
Query: 394 VPVDERMRVIDANGNLVPHLY 414
+ ++ + + PH++
Sbjct: 301 LNLEAPISRVCGYDTPFPHIF 321
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 40/279 (14%)
Query: 235 IIIATGSVPFVPKGIEVDGKTVITSD---HALKL-EFVPDW----IAIVGSGYIGLEFSD 286
++ A G+ P VP V+ K V T+D AL + E++ + + I+G GYIG+E ++
Sbjct: 106 LVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAE 165
Query: 287 VYTALGSEVTFIEALDQLM-PGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKP 345
+ A G VT I ++++ FD E+ + + K+ H + +IT +G+
Sbjct: 166 AFAAQGKNVTMIVRGERVLRRSFDKEVTDILE------EKLKKHVNLRLQEITMKIEGEE 219
Query: 346 VTIELIDAKTKEPKDTLEVDAALIATGRAP---FTNGLGLENINVVTQRGFVPVDERMRV 402
+E + E K L ++ATG P LG+ + + G + +E+M+
Sbjct: 220 -RVEKVVTDAGEYKAEL----VILATGIKPNIELAKQLGVR----IGETGAIWTNEKMQT 270
Query: 403 ----IDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACF 457
+ A G++ + I + LA A + G + G++ H L F
Sbjct: 271 SVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKF 330
Query: 458 THPEISMVGLTEPQAREKAEKEGFEVSVAKTSF-KANTK 495
EI GLTE +A KEG++V +T+F KA+T+
Sbjct: 331 MDVEIGKTGLTEMEAL----KEGYDV---RTAFIKASTR 362
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 19/157 (12%)
Query: 274 IVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333
+VG G+IGLE + LG + T +E DQ+ D E A + I + +D G
Sbjct: 156 VVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDREXAGFAHQA-IRDQGVDLRLGTA 214
Query: 334 ATKIT-----------PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGL 382
++++ +D I+ + T + LE D + A G P T L
Sbjct: 215 LSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQ-LAR 273
Query: 383 ENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDA 419
+ + + G + V+ + D P +Y +GDA
Sbjct: 274 DAGLAIGELGGIKVNAXXQTSD------PAIYAVGDA 304
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 19/157 (12%)
Query: 274 IVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333
+VG G+IGLE + LG + T +E DQ+ D E A + I + +D G
Sbjct: 156 VVGGGFIGLEXXESLHHLGIKTTLLELADQVXTPVDREXAGFAHQA-IRDQGVDLRLGTA 214
Query: 334 ATKIT-----------PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGL 382
++++ +D I+ + T + LE D + A G P T L
Sbjct: 215 LSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQ-LAR 273
Query: 383 ENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDA 419
+ + + G + V+ + D P +Y +GDA
Sbjct: 274 DAGLAIGELGGIKVNAXXQTSD------PAIYAVGDA 304
>pdb|1W79|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Y|A Chain A, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|B Chain B, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|C Chain C, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|D Chain D, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|2VGJ|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2XLN|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
Length = 489
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 26/199 (13%)
Query: 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLE---N 384
+ TGV +TPA +G+P ++L A+ D V TG A N L ++
Sbjct: 162 FDTGVTEVSVTPAAEGEPADVDLGAAEGYAELDNRAV------TGAAGSANTLVIDRPVG 215
Query: 385 INVVTQRGFVPVDE----RMRVIDANGNLVPHLYCIG-DANGKMMLAHA------ASAQG 433
N + G +P D +R +D L HL+ ++NG + A Q
Sbjct: 216 TNTIAVTGSLPADAAPVTALRTVDEPAALAGHLFEEALESNGVTVKGDVGLGGVPADWQD 275
Query: 434 ISVVEQVTGRDHVLNHLSIPAACFT---HPEISMVGLTEPQAREKAEKEGF-EVSVAKTS 489
V+ T + L+ + +P F+ H E+ + + + A G V A +
Sbjct: 276 AEVLADHTSAE--LSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTWDAGLVGVEEALSG 333
Query: 490 FKANTKALAENEGEGLAKG 508
+T L N+G GL++G
Sbjct: 334 LGVDTAGLVLNDGSGLSRG 352
>pdb|1U2X|A Chain A, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
pdb|1U2X|B Chain B, Crystal Structure Of A Hypothetical Adp-Dependent
Phosphofructokinase From Pyrococcus Horikoshii Ot3
Length = 474
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 287 VYTALGSEVTFIEALDQ-----LMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAK 341
+YTA + + I L+Q L+ FDP+ ++ +R+ PR+I+ A + K
Sbjct: 30 IYTAYNANIDAIVKLNQETIQNLINAFDPD--EVKRRIEEYPREINEPIDFVARLVHTLK 87
Query: 342 DGKPVTIELIDAKTKEPKD-TLEVDAALIATGRAPFTNGL-GLENINVVTQRGFVPVDER 399
GKP + L++ K E D T + + N L GL+ V+ F+P +R
Sbjct: 88 LGKPAAVPLVNEKXNEWFDKTFRYEEERLGGQAGIIANTLAGLKIRKVIAYTPFLP--KR 145
Query: 400 MRVIDANGNLVP 411
+ + G L P
Sbjct: 146 LAELFKKGVLYP 157
>pdb|2WKE|A Chain A, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|B Chain B, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|C Chain C, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|D Chain D, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2XDM|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XK1|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2Y4A|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
Length = 466
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 26/199 (13%)
Query: 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLE---N 384
+ TGV +TPA +G+P ++L A+ D V TG A N L ++
Sbjct: 162 FDTGVTEVSVTPAAEGEPADVDLGAAEGYAELDNRAV------TGAAGSANTLVIDRPVG 215
Query: 385 INVVTQRGFVPVDE----RMRVIDANGNLVPHLYCIG-DANGKMMLAHA------ASAQG 433
N + G +P D +R +D L HL+ ++NG + A Q
Sbjct: 216 TNTIAVTGSLPADAAPVTALRTVDEPAALAGHLFEEALESNGVTVKGDVGLGGVPADWQD 275
Query: 434 ISVVEQVTGRDHVLNHLSIPAACFT---HPEISMVGLTEPQAREKAEKEGF-EVSVAKTS 489
V+ T + L+ + +P F+ H E+ + + + A G V A +
Sbjct: 276 AEVLADHTSAE--LSEILVPFMKFSNNGHAEMLVKSIGQETAGAGTWDAGLVGVEEALSG 333
Query: 490 FKANTKALAENEGEGLAKG 508
+T L N+G GL++G
Sbjct: 334 LGVDTAGLVLNDGSGLSRG 352
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 207 VDILTGVG-TILGPQKVKFGTDN--IVTAKDIIIATGSVP--FVPKGIEVDGKTVITSDH 261
+D+LTG T L Q D+ ++A I+IATGS G ++ G V+T
Sbjct: 72 IDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPG--VVTLRT 129
Query: 262 ALKLEFVPD-W-----IAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM 305
++ + D W + IVG G IG E + LG VT +EA D+L+
Sbjct: 130 YGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 272 IAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFD-PEIGKLAQRVLINPRKIDYHT 330
+ ++G GYIGLE + VT ++ +++ P + + L +D T
Sbjct: 151 LVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEH-LHREAGVDIRT 209
Query: 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQ 390
G + D + VT L + T+ P D + LI GL ++N
Sbjct: 210 GTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN------ 263
Query: 391 RGFVPVDERMRVIDANGNLVPHLYCIGD 418
G V ++E M+ D P + +GD
Sbjct: 264 -GIV-INEHMQTSD------PLIMAVGD 283
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 16/148 (10%)
Query: 272 IAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFD-PEIGKLAQRVLINPRKIDYHT 330
+ ++G GYIGLE + VT ++ +++ P + + L +D T
Sbjct: 152 LVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEH-LHREAGVDIRT 210
Query: 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQ 390
G + D + VT L + T+ P D + LI GL ++N
Sbjct: 211 GTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN------ 264
Query: 391 RGFVPVDERMRVIDANGNLVPHLYCIGD 418
G V ++E M+ D P + +GD
Sbjct: 265 -GIV-INEHMQTSD------PLIMAVGD 284
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 24/194 (12%)
Query: 232 AKDIIIATGSVPF---VPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVY 288
AK +I+ATG+ P +P GK V T + + ++G G +E
Sbjct: 112 AKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFL 171
Query: 289 TALGSEVTFIEALDQLMPGFDPEIGKLAQ-RVLINPR-KIDYHTGVFATKITPAKDGKPV 346
T EVT I D L K+AQ R NP+ K + T V + + G
Sbjct: 172 TKFADEVTVIHRRDTL------RANKVAQARAFANPKMKFIWDTAVEEIQGADSVSG--- 222
Query: 347 TIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDAN 406
++L + KT E + L D I G P N +++ + G+V V + +
Sbjct: 223 -VKLRNLKTGEVSE-LATDGVFIFIGHVP--NTAFVKDTVSLRDDGYVDVRDEIY----- 273
Query: 407 GNLVPHLYCIGDAN 420
+P L+ GD +
Sbjct: 274 -TNIPMLFAAGDVS 286
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 272 IAIVGSGYIGLEFSDVYTALGSEVTFIEA----LDQL----MPGFDPEIGKLAQR 318
IA+VG GY+GL + + LG+ V I+ ++QL +P ++P + K+ R
Sbjct: 5 IAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR 59
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 117 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVV 151
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVV 108
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVV 108
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 51 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVV 85
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVV 108
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVV 108
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 56 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVV 90
>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s
With Bound Nadp
Length = 371
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 243 PFVPKG---IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIE 299
P +P+ + V+ + SD +++ +F W ++G +++ A+GS+VT I+
Sbjct: 32 PMLPRDQVYVRVEAVAINPSDTSMRGQFATPW------AFLGTDYAGTVVAVGSDVTHIQ 85
Query: 300 ALDQL 304
D++
Sbjct: 86 VGDRV 90
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 222 VKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256
V FG D ++ DI+ TG++ VP G E+ G+ V
Sbjct: 74 VVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVV 108
>pdb|3H8I|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8I|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|A Chain A, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
pdb|3H8L|B Chain B, The First X-Ray Structure Of A Sulfide:quinone
Oxidoreductase: Insights Into Sulfide Oxidation
Mechanism
Length = 409
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 349 ELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENI--NVVTQRGFVPVDERMRVI--- 403
E++D K +T+ D ++ P+T L+N ++V GF+P D M I
Sbjct: 248 EIVDEKG----NTIPADITILL---PPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKYD 300
Query: 404 ------DANGNLVPHLYCIGDANGKMMLAHAASAQGI 434
DAN VP L + G++ H A+ G+
Sbjct: 301 NVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGV 337
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEA 300
D+ L P I IVG+G GL D+ T G +VT +EA
Sbjct: 35 DNGLNPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEA 75
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 413 LYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQA 472
LY + D KMM A A G QVTG HL A H E +VG TE
Sbjct: 247 LYMVLDEELKMM-ARICPAGG-----QVTG-----PHLR-EMARLAHTEYFIVGHTEADV 294
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENE--GEGLAKGV 509
R+ + F +V + ++ T+ +A +E G G G+
Sbjct: 295 RDLLRETMFAPTVTGSPIESATRVIARHERAGRGYYSGI 333
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 413 LYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQA 472
LY + D KMM A A G QVTG HL A H E +VG TE
Sbjct: 247 LYMVLDEELKMM-ARICPAGG-----QVTG-----PHLR-EMARLAHTEYFIVGHTEADV 294
Query: 473 REKAEKEGFEVSVAKTSFKANTKALAENE--GEGLAKGV 509
R+ + F +V + ++ T+ +A +E G G G+
Sbjct: 295 RDLLRETMFAPTVTGSPIESATRVIARHERAGRGYYSGI 333
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 265 LEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRV---LI 321
LE I IVG G IG + + A+G +V + LD I + A+++ +
Sbjct: 138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD---------IREKAEKINAKAV 188
Query: 322 NPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIA-TGRAPFTNGL 380
+ ++ ++ V + +T +KD KP+ ID P+ L D +I T RA NG
Sbjct: 189 SLEELLKNSDVISLHVTVSKDAKPI----IDY----PQFELMKDNVIIVNTSRAVAVNGK 240
Query: 381 GL 382
L
Sbjct: 241 AL 242
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 42 PSKPINLRFCGLRREAFGFSPSAFTRCSN 70
P P N R L R+ +P FT CSN
Sbjct: 158 PGAPSNTRTLQLTRQKVTINPVTFTTCSN 186
>pdb|2X5F|A Chain A, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
pdb|2X5F|B Chain B, Crystal Structure Of The Methicillin-Resistant
Staphylococcus Aureus Sar2028, An
Aspartate_tyrosine_phenylalanine Pyridoxal-5'-Phosphate
Dependent Aminotransferase
Length = 430
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 224 FGTDNIVTA-----KDIIIATGSVPFVPKGIEVDGKTVITSDHALKL--EFVPDWIAIVG 276
+ TD++V A KD +I + P P G K V T A+K IA+V
Sbjct: 174 YTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVD 233
Query: 277 SGYIGLEFSDVYT 289
Y GL + DVYT
Sbjct: 234 DAYYGLFYEDVYT 246
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 42 PSKPINLRFCGLRREAFGFSPSAFTRCSN 70
P P N R L R+ +P FT CSN
Sbjct: 158 PGAPSNTRTLQLTRQKVTINPVTFTTCSN 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,412,877
Number of Sequences: 62578
Number of extensions: 638437
Number of successful extensions: 1965
Number of sequences better than 100.0: 152
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 168
length of query: 556
length of database: 14,973,337
effective HSP length: 104
effective length of query: 452
effective length of database: 8,465,225
effective search space: 3826281700
effective search space used: 3826281700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)