Query 008714
Match_columns 556
No_of_seqs 448 out of 3882
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.8E-77 3.9E-82 616.0 50.3 426 99-545 2-432 (454)
2 KOG1335 Dihydrolipoamide dehyd 100.0 6E-75 1.3E-79 553.1 39.5 427 100-542 38-470 (506)
3 PTZ00153 lipoamide dehydrogena 100.0 1.7E-68 3.7E-73 575.0 54.3 436 100-538 115-622 (659)
4 PRK06467 dihydrolipoamide dehy 100.0 3.4E-67 7.4E-72 555.5 51.9 421 99-539 2-428 (471)
5 PRK07846 mycothione reductase; 100.0 4.7E-67 1E-71 550.9 49.3 412 101-538 1-417 (451)
6 PLN02546 glutathione reductase 100.0 1.6E-66 3.4E-71 553.9 50.9 416 99-539 77-505 (558)
7 TIGR01421 gluta_reduc_1 glutat 100.0 2.2E-66 4.8E-71 546.2 51.3 417 101-540 2-424 (450)
8 TIGR01424 gluta_reduc_2 glutat 100.0 3.2E-66 6.8E-71 545.7 51.1 418 101-542 2-422 (446)
9 PRK06370 mercuric reductase; V 100.0 3.8E-66 8.1E-71 548.4 50.7 421 99-540 3-427 (463)
10 TIGR01423 trypano_reduc trypan 100.0 4.5E-66 9.9E-71 545.0 49.6 417 100-540 2-445 (486)
11 PRK06115 dihydrolipoamide dehy 100.0 1.4E-65 3E-70 542.9 51.1 420 101-538 3-428 (466)
12 TIGR03452 mycothione_red mycot 100.0 6.4E-66 1.4E-70 542.9 48.1 412 101-538 2-420 (452)
13 PRK06116 glutathione reductase 100.0 1.9E-65 4E-70 541.5 51.1 418 100-541 3-425 (450)
14 PTZ00058 glutathione reductase 100.0 1.7E-65 3.6E-70 545.6 49.6 416 100-539 47-530 (561)
15 PRK06416 dihydrolipoamide dehy 100.0 5.1E-65 1.1E-69 540.3 51.4 420 100-539 3-425 (462)
16 PLN02507 glutathione reductase 100.0 7.7E-65 1.7E-69 539.2 50.0 417 99-539 23-456 (499)
17 TIGR02053 MerA mercuric reduct 100.0 1.1E-64 2.4E-69 537.6 50.3 416 102-538 1-420 (463)
18 PRK05976 dihydrolipoamide dehy 100.0 2.3E-64 4.9E-69 535.7 52.7 420 100-538 3-434 (472)
19 PRK05249 soluble pyridine nucl 100.0 1.4E-64 3E-69 537.1 50.0 416 100-538 4-425 (461)
20 PRK07845 flavoprotein disulfid 100.0 2.2E-64 4.7E-69 533.8 50.9 414 102-538 2-428 (466)
21 KOG0405 Pyridine nucleotide-di 100.0 1.8E-65 3.8E-70 482.3 37.4 419 99-539 18-445 (478)
22 PRK07818 dihydrolipoamide dehy 100.0 6.6E-64 1.4E-68 531.3 51.5 417 101-539 4-429 (466)
23 PRK06912 acoL dihydrolipoamide 100.0 7.1E-64 1.5E-68 529.6 50.4 415 103-539 2-421 (458)
24 PRK06327 dihydrolipoamide dehy 100.0 9.6E-64 2.1E-68 530.5 51.4 421 100-538 3-437 (475)
25 PRK14694 putative mercuric red 100.0 6.7E-64 1.5E-68 531.2 50.0 416 99-539 4-426 (468)
26 PRK14727 putative mercuric red 100.0 1.6E-63 3.5E-68 528.9 50.6 415 99-538 14-436 (479)
27 PRK06292 dihydrolipoamide dehy 100.0 1.4E-63 3E-68 529.3 49.7 420 100-541 2-425 (460)
28 TIGR01438 TGR thioredoxin and 100.0 2.2E-63 4.8E-68 526.1 50.2 422 101-542 2-444 (484)
29 PRK13748 putative mercuric red 100.0 2.6E-62 5.6E-67 532.0 49.3 418 100-541 97-521 (561)
30 PRK08010 pyridine nucleotide-d 100.0 1.6E-61 3.4E-66 510.3 49.7 400 101-541 3-412 (441)
31 PTZ00052 thioredoxin reductase 100.0 8E-61 1.7E-65 509.0 49.4 416 100-539 4-451 (499)
32 TIGR01350 lipoamide_DH dihydro 100.0 2.1E-60 4.6E-65 505.3 51.7 418 102-540 2-425 (461)
33 PRK07251 pyridine nucleotide-d 100.0 1.5E-60 3.2E-65 502.4 49.8 401 101-542 3-412 (438)
34 KOG4716 Thioredoxin reductase 100.0 4.6E-57 1E-61 423.7 29.8 424 98-537 16-459 (503)
35 PRK13512 coenzyme A disulfide 100.0 2.1E-49 4.6E-54 416.5 34.8 366 102-538 2-402 (438)
36 PRK09564 coenzyme A disulfide 100.0 2.7E-48 5.7E-53 410.8 35.7 373 103-538 2-408 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4E-42 8.8E-47 361.5 32.6 313 202-539 54-396 (427)
38 PRK14989 nitrite reductase sub 100.0 8E-41 1.7E-45 371.6 35.0 361 102-535 4-387 (847)
39 PRK09754 phenylpropionate diox 100.0 6E-38 1.3E-42 326.1 30.5 345 102-528 4-370 (396)
40 PRK04965 NADH:flavorubredoxin 100.0 7.9E-37 1.7E-41 315.9 34.3 348 102-531 3-368 (377)
41 TIGR02374 nitri_red_nirB nitri 100.0 9.5E-37 2.1E-41 339.8 33.0 347 104-528 1-367 (785)
42 PRK10262 thioredoxin reductase 100.0 2.6E-35 5.6E-40 298.1 30.0 295 99-441 4-311 (321)
43 TIGR01292 TRX_reduct thioredox 100.0 7.9E-35 1.7E-39 292.1 30.3 288 102-441 1-297 (300)
44 COG1252 Ndh NADH dehydrogenase 100.0 3.8E-35 8.2E-40 294.8 26.5 283 101-441 3-328 (405)
45 PTZ00318 NADH dehydrogenase-li 100.0 1E-34 2.2E-39 304.0 28.5 282 101-442 10-345 (424)
46 TIGR01316 gltA glutamate synth 100.0 2.6E-34 5.6E-39 302.5 26.2 282 100-441 132-446 (449)
47 COG0492 TrxB Thioredoxin reduc 100.0 1.5E-33 3.2E-38 277.6 29.0 287 100-441 2-297 (305)
48 TIGR03140 AhpF alkyl hydropero 100.0 3.7E-34 8E-39 306.4 26.0 291 99-442 210-510 (515)
49 PRK12831 putative oxidoreducta 100.0 1E-33 2.2E-38 298.4 27.4 286 99-441 138-457 (464)
50 TIGR03143 AhpF_homolog putativ 100.0 3.1E-33 6.7E-38 301.5 30.0 288 100-441 3-305 (555)
51 PRK15317 alkyl hydroperoxide r 100.0 4.8E-33 1E-37 298.3 30.7 290 99-441 209-508 (517)
52 PRK09853 putative selenate red 100.0 6.9E-32 1.5E-36 297.8 28.1 282 99-444 537-841 (1019)
53 PRK12778 putative bifunctional 100.0 6.5E-32 1.4E-36 301.5 27.9 285 99-441 429-746 (752)
54 TIGR03169 Nterm_to_SelD pyridi 100.0 6.6E-32 1.4E-36 278.3 25.6 277 103-441 1-307 (364)
55 PRK11749 dihydropyrimidine deh 100.0 1.1E-31 2.4E-36 284.0 27.5 283 99-441 138-448 (457)
56 PRK12779 putative bifunctional 100.0 3.1E-31 6.8E-36 297.6 28.2 284 100-441 305-623 (944)
57 KOG1336 Monodehydroascorbate/f 100.0 2.5E-31 5.5E-36 264.3 23.5 286 101-442 74-382 (478)
58 PRK12770 putative glutamate sy 100.0 1.2E-30 2.7E-35 266.9 27.9 284 102-441 19-346 (352)
59 COG1251 NirB NAD(P)H-nitrite r 100.0 1.5E-31 3.3E-36 277.2 20.7 346 102-528 4-372 (793)
60 TIGR03315 Se_ygfK putative sel 100.0 8E-31 1.7E-35 291.0 27.1 279 100-444 536-839 (1012)
61 PRK12810 gltD glutamate syntha 100.0 2.4E-30 5.1E-35 274.3 27.4 285 100-441 142-461 (471)
62 PRK12775 putative trifunctiona 100.0 6.4E-30 1.4E-34 289.7 28.0 284 100-441 429-751 (1006)
63 TIGR01318 gltD_gamma_fam gluta 100.0 1.8E-29 3.8E-34 266.7 28.2 283 100-441 140-462 (467)
64 PRK12814 putative NADPH-depend 100.0 1.4E-29 3E-34 277.3 27.6 282 100-441 192-497 (652)
65 PRK12769 putative oxidoreducta 100.0 2.3E-29 4.9E-34 276.9 28.3 283 100-441 326-648 (654)
66 TIGR01317 GOGAT_sm_gam glutama 100.0 2.5E-28 5.5E-33 258.8 27.9 286 101-441 143-475 (485)
67 PRK12809 putative oxidoreducta 100.0 4.5E-28 9.7E-33 265.4 27.8 284 100-442 309-632 (639)
68 PRK13984 putative oxidoreducta 100.0 8.8E-28 1.9E-32 262.8 25.8 283 99-441 281-598 (604)
69 KOG2495 NADH-dehydrogenase (ub 100.0 5.2E-28 1.1E-32 236.0 18.9 291 97-441 51-393 (491)
70 PLN02852 ferredoxin-NADP+ redu 100.0 7.7E-27 1.7E-31 243.7 28.7 290 101-442 26-419 (491)
71 KOG0404 Thioredoxin reductase 100.0 5.9E-27 1.3E-31 209.1 18.9 287 101-438 8-312 (322)
72 COG3634 AhpF Alkyl hydroperoxi 99.9 2.6E-27 5.7E-32 224.2 14.2 286 100-438 210-508 (520)
73 PLN02172 flavin-containing mon 99.9 1.1E-25 2.3E-30 236.1 27.5 298 101-444 10-352 (461)
74 PRK12771 putative glutamate sy 99.9 1.5E-25 3.2E-30 242.9 25.3 282 100-441 136-440 (564)
75 TIGR01372 soxA sarcosine oxida 99.9 3.9E-25 8.5E-30 252.4 28.9 281 99-441 161-468 (985)
76 COG0446 HcaD Uncharacterized N 99.9 2.6E-24 5.7E-29 225.7 27.2 294 204-523 65-383 (415)
77 PF00743 FMO-like: Flavin-bind 99.9 3.2E-23 6.9E-28 220.2 23.6 321 102-444 2-396 (531)
78 KOG1346 Programmed cell death 99.9 2.9E-24 6.2E-29 207.9 10.4 322 98-452 175-528 (659)
79 COG0493 GltD NADPH-dependent g 99.9 2E-21 4.3E-26 201.1 16.9 288 101-441 123-447 (457)
80 PRK06567 putative bifunctional 99.9 3.6E-20 7.9E-25 202.4 23.5 291 99-441 381-766 (1028)
81 KOG3851 Sulfide:quinone oxidor 99.8 4.2E-20 9.1E-25 173.8 16.5 303 99-455 37-375 (446)
82 PF13738 Pyr_redox_3: Pyridine 99.8 4.1E-20 8.9E-25 174.3 14.5 182 105-303 1-201 (203)
83 KOG1399 Flavin-containing mono 99.8 1.2E-19 2.6E-24 186.9 17.8 302 101-444 6-333 (448)
84 COG2072 TrkA Predicted flavopr 99.8 2.5E-19 5.3E-24 187.4 12.8 187 99-304 6-210 (443)
85 PF07992 Pyr_redox_2: Pyridine 99.8 3.7E-19 8E-24 167.5 8.4 141 103-276 1-159 (201)
86 KOG0399 Glutamate synthase [Am 99.8 3.2E-18 6.9E-23 182.3 14.9 284 100-440 1784-2115(2142)
87 PF13434 K_oxygenase: L-lysine 99.8 1.2E-17 2.6E-22 168.5 17.1 256 101-374 2-340 (341)
88 KOG2755 Oxidoreductase [Genera 99.8 2.1E-17 4.5E-22 151.8 15.5 193 218-421 79-321 (334)
89 PRK05329 anaerobic glycerol-3- 99.7 2.3E-16 5E-21 162.8 24.3 163 272-443 218-419 (422)
90 COG3486 IucD Lysine/ornithine 99.7 1.9E-15 4E-20 148.4 26.4 330 99-444 3-414 (436)
91 PTZ00188 adrenodoxin reductase 99.7 1.5E-14 3.3E-19 149.0 25.7 264 102-423 40-417 (506)
92 COG1148 HdrA Heterodisulfide r 99.7 1.3E-15 2.7E-20 151.5 14.6 201 229-440 298-540 (622)
93 COG2081 Predicted flavoprotein 99.6 1.5E-13 3.2E-18 135.6 21.5 140 100-242 2-166 (408)
94 PF02852 Pyr_redox_dim: Pyridi 99.6 8.1E-15 1.7E-19 123.4 10.0 85 452-541 1-85 (110)
95 KOG1800 Ferredoxin/adrenodoxin 99.6 2E-13 4.3E-18 132.3 18.3 143 102-289 21-179 (468)
96 COG4529 Uncharacterized protei 99.5 8.6E-12 1.9E-16 126.4 25.6 331 102-441 2-459 (474)
97 PF00070 Pyr_redox: Pyridine n 99.5 6.3E-13 1.4E-17 104.9 11.7 80 271-353 1-80 (80)
98 PRK07843 3-ketosteroid-delta-1 99.3 2.4E-11 5.1E-16 131.7 15.7 244 100-376 6-271 (557)
99 PRK12842 putative succinate de 99.3 1.7E-11 3.7E-16 133.4 14.4 245 99-376 7-276 (574)
100 PRK06134 putative FAD-binding 99.3 5.4E-11 1.2E-15 129.5 14.1 247 99-375 10-278 (581)
101 KOG2415 Electron transfer flav 99.2 9.3E-12 2E-16 121.9 5.4 147 96-242 71-255 (621)
102 PF03486 HI0933_like: HI0933-l 99.2 1.6E-10 3.4E-15 119.3 12.6 135 102-243 1-166 (409)
103 PRK09897 hypothetical protein; 99.2 9.4E-10 2E-14 117.1 18.6 182 102-291 2-213 (534)
104 PRK06854 adenylylsulfate reduc 99.1 3.8E-09 8.3E-14 115.4 19.8 35 100-134 10-46 (608)
105 COG0029 NadB Aspartate oxidase 99.1 8.5E-10 1.8E-14 111.8 12.7 313 103-444 9-397 (518)
106 TIGR03378 glycerol3P_GlpB glyc 99.1 1.3E-07 2.8E-12 97.0 28.3 141 291-441 246-419 (419)
107 PRK08275 putative oxidoreducta 99.1 3.5E-09 7.5E-14 115.0 16.8 45 391-441 356-401 (554)
108 COG0644 FixC Dehydrogenases (f 99.1 7.2E-10 1.6E-14 115.4 10.7 140 100-244 2-153 (396)
109 PRK09231 fumarate reductase fl 99.0 3.4E-09 7.3E-14 115.4 15.6 41 100-140 3-46 (582)
110 PRK05945 sdhA succinate dehydr 99.0 6.6E-10 1.4E-14 121.0 9.8 53 390-442 350-411 (575)
111 PRK08205 sdhA succinate dehydr 99.0 4.6E-09 1E-13 114.5 16.1 53 390-442 355-416 (583)
112 PRK13800 putative oxidoreducta 99.0 5E-09 1.1E-13 119.7 16.4 66 371-442 337-407 (897)
113 COG3075 GlpB Anaerobic glycero 99.0 2.8E-08 6.1E-13 95.3 17.8 127 310-443 258-416 (421)
114 PRK06069 sdhA succinate dehydr 99.0 6.3E-09 1.4E-13 113.5 15.3 39 100-138 4-46 (577)
115 PRK07804 L-aspartate oxidase; 99.0 3.2E-08 6.9E-13 107.0 20.5 39 99-137 14-53 (541)
116 TIGR00551 nadB L-aspartate oxi 99.0 5.5E-09 1.2E-13 111.7 14.3 38 101-139 2-40 (488)
117 TIGR01812 sdhA_frdA_Gneg succi 98.9 1.1E-08 2.4E-13 111.6 15.2 51 390-442 341-400 (566)
118 PRK05192 tRNA uridine 5-carbox 98.9 4.5E-09 9.9E-14 112.0 11.6 139 100-242 3-156 (618)
119 PRK07803 sdhA succinate dehydr 98.9 5.5E-09 1.2E-13 114.6 12.3 36 100-135 7-42 (626)
120 PRK04176 ribulose-1,5-biphosph 98.9 8.5E-09 1.8E-13 100.3 12.3 130 100-243 24-173 (257)
121 TIGR01176 fum_red_Fp fumarate 98.9 2.5E-08 5.5E-13 108.4 17.3 38 101-138 3-43 (580)
122 TIGR02028 ChlP geranylgeranyl 98.9 3.2E-09 6.9E-14 110.6 9.9 142 102-247 1-164 (398)
123 TIGR02061 aprA adenosine phosp 98.9 3.1E-08 6.7E-13 107.6 17.7 33 103-135 1-37 (614)
124 TIGR00292 thiazole biosynthesi 98.9 1.4E-08 3.1E-13 98.3 13.6 39 100-138 20-59 (254)
125 PRK12845 3-ketosteroid-delta-1 98.9 7.5E-08 1.6E-12 104.3 20.6 58 98-156 13-74 (564)
126 PRK06263 sdhA succinate dehydr 98.9 1.1E-08 2.5E-13 110.8 14.3 34 100-134 6-39 (543)
127 PLN02815 L-aspartate oxidase 98.9 2.8E-08 6E-13 107.9 16.5 41 97-138 25-66 (594)
128 PRK06452 sdhA succinate dehydr 98.9 1E-08 2.3E-13 111.3 13.3 38 100-137 4-42 (566)
129 PRK09077 L-aspartate oxidase; 98.9 1.1E-08 2.3E-13 110.6 13.1 38 100-138 7-45 (536)
130 PRK07395 L-aspartate oxidase; 98.9 3.6E-09 7.8E-14 114.3 8.3 40 99-139 7-47 (553)
131 PRK10157 putative oxidoreducta 98.9 2E-08 4.4E-13 105.6 13.1 144 101-244 5-165 (428)
132 PF01134 GIDA: Glucose inhibit 98.8 3.6E-08 7.7E-13 99.9 12.6 124 103-241 1-150 (392)
133 PLN02463 lycopene beta cyclase 98.8 4.8E-08 1E-12 102.5 13.8 140 99-245 26-171 (447)
134 PRK08071 L-aspartate oxidase; 98.8 5.3E-08 1.1E-12 104.5 14.0 38 101-139 3-41 (510)
135 PRK10015 oxidoreductase; Provi 98.8 1.4E-08 3E-13 106.7 9.0 144 100-244 4-165 (429)
136 PLN00093 geranylgeranyl diphos 98.8 1.2E-07 2.7E-12 99.9 16.0 141 99-244 37-200 (450)
137 TIGR02032 GG-red-SF geranylger 98.8 1.3E-08 2.8E-13 101.6 7.9 138 102-244 1-149 (295)
138 TIGR01790 carotene-cycl lycope 98.8 5.4E-08 1.2E-12 101.3 12.5 131 103-243 1-141 (388)
139 PRK06834 hypothetical protein; 98.7 4.5E-08 9.7E-13 104.5 10.7 142 101-246 3-159 (488)
140 PF01946 Thi4: Thi4 family; PD 98.7 1.3E-07 2.9E-12 86.5 12.0 125 100-243 16-165 (230)
141 COG1635 THI4 Ribulose 1,5-bisp 98.7 1.8E-07 3.9E-12 85.1 11.9 123 101-242 30-177 (262)
142 TIGR02023 BchP-ChlP geranylger 98.7 6.1E-08 1.3E-12 100.8 10.4 140 102-245 1-157 (388)
143 PF13454 NAD_binding_9: FAD-NA 98.7 8.8E-08 1.9E-12 85.9 9.8 131 105-241 1-155 (156)
144 PF12831 FAD_oxidored: FAD dep 98.7 2E-08 4.4E-13 105.5 6.4 134 103-241 1-148 (428)
145 PRK08401 L-aspartate oxidase; 98.7 1.1E-07 2.4E-12 101.1 11.9 142 102-244 2-176 (466)
146 PRK06847 hypothetical protein; 98.7 3.1E-08 6.8E-13 102.6 7.6 143 100-245 3-165 (375)
147 PF00890 FAD_binding_2: FAD bi 98.7 2.1E-07 4.6E-12 97.8 13.4 64 310-376 141-204 (417)
148 PRK05335 tRNA (uracil-5-)-meth 98.7 1.9E-07 4.1E-12 95.5 12.3 31 102-132 3-33 (436)
149 PLN02661 Putative thiazole syn 98.7 3.7E-07 8.1E-12 91.1 14.0 40 99-138 90-131 (357)
150 TIGR00136 gidA glucose-inhibit 98.7 1.4E-07 3E-12 100.7 11.5 139 102-243 1-154 (617)
151 PRK06481 fumarate reductase fl 98.7 1.6E-06 3.5E-11 93.2 19.6 41 100-140 60-101 (506)
152 TIGR01292 TRX_reduct thioredox 98.7 3E-07 6.5E-12 92.0 13.2 99 271-379 2-116 (300)
153 PRK07121 hypothetical protein; 98.6 1.8E-06 3.8E-11 92.8 19.8 42 100-141 19-61 (492)
154 PRK07190 hypothetical protein; 98.6 1.3E-07 2.7E-12 101.0 9.9 142 101-244 5-166 (487)
155 PLN02697 lycopene epsilon cycl 98.6 2.1E-07 4.4E-12 99.4 11.5 134 99-243 106-248 (529)
156 PRK08773 2-octaprenyl-3-methyl 98.6 2.6E-07 5.5E-12 96.4 11.3 146 100-245 5-171 (392)
157 PRK12839 hypothetical protein; 98.6 1.8E-06 4E-11 93.8 18.0 57 98-154 5-65 (572)
158 PRK07608 ubiquinone biosynthes 98.6 1.7E-07 3.6E-12 97.6 9.5 32 101-132 5-36 (388)
159 COG0579 Predicted dehydrogenas 98.6 6.9E-07 1.5E-11 91.7 13.0 38 100-137 2-42 (429)
160 PRK07364 2-octaprenyl-6-methox 98.6 2.7E-07 5.8E-12 97.0 10.3 35 98-132 15-49 (415)
161 PRK08274 tricarballylate dehyd 98.6 1.4E-06 3E-11 93.0 15.8 41 100-140 3-46 (466)
162 PRK05714 2-octaprenyl-3-methyl 98.6 4E-07 8.6E-12 95.4 11.4 33 101-133 2-34 (405)
163 PRK11445 putative oxidoreducta 98.6 3.6E-07 7.8E-12 93.7 10.8 31 101-132 1-31 (351)
164 TIGR01813 flavo_cyto_c flavocy 98.5 1.4E-06 3E-11 92.3 15.3 61 310-373 130-190 (439)
165 PF01266 DAO: FAD dependent ox 98.5 2E-06 4.3E-11 88.1 16.0 57 310-375 147-203 (358)
166 PRK07494 2-octaprenyl-6-methox 98.5 4.4E-07 9.5E-12 94.5 11.1 34 100-133 6-39 (388)
167 PF05834 Lycopene_cycl: Lycope 98.5 2.5E-07 5.3E-12 95.6 8.9 133 103-244 1-143 (374)
168 PRK06184 hypothetical protein; 98.5 3.2E-07 7E-12 98.8 10.0 35 101-135 3-38 (502)
169 PRK13977 myosin-cross-reactive 98.5 1.3E-06 2.8E-11 92.6 14.1 99 279-378 192-296 (576)
170 TIGR00275 flavoprotein, HI0933 98.5 7.8E-07 1.7E-11 92.7 11.8 135 105-243 1-160 (400)
171 PRK11728 hydroxyglutarate oxid 98.5 3.4E-06 7.3E-11 88.0 16.6 36 101-136 2-40 (393)
172 PF13450 NAD_binding_8: NAD(P) 98.5 1.8E-07 3.8E-12 70.9 4.9 36 106-141 1-37 (68)
173 TIGR03329 Phn_aa_oxid putative 98.5 5.3E-06 1.2E-10 88.3 18.1 46 100-145 23-72 (460)
174 PRK08244 hypothetical protein; 98.5 4.6E-07 9.9E-12 97.4 9.3 32 101-132 2-33 (493)
175 PRK08013 oxidoreductase; Provi 98.5 1.1E-06 2.4E-11 91.9 11.4 145 101-245 3-170 (400)
176 PRK08020 ubiF 2-octaprenyl-3-m 98.4 3E-07 6.6E-12 95.8 7.0 34 100-133 4-37 (391)
177 PRK09126 hypothetical protein; 98.4 4.8E-07 1E-11 94.3 8.4 33 101-133 3-35 (392)
178 COG0654 UbiH 2-polyprenyl-6-me 98.4 4.2E-06 9.1E-11 87.0 15.3 60 310-377 104-164 (387)
179 PRK12843 putative FAD-binding 98.4 7.5E-06 1.6E-10 89.4 17.7 43 100-142 15-58 (578)
180 PF01494 FAD_binding_3: FAD bi 98.4 6.6E-07 1.4E-11 91.6 8.7 31 102-132 2-32 (356)
181 PRK08163 salicylate hydroxylas 98.4 7E-07 1.5E-11 93.2 8.9 35 101-135 4-39 (396)
182 TIGR01377 soxA_mon sarcosine o 98.4 1.1E-05 2.3E-10 83.8 17.6 34 102-135 1-34 (380)
183 TIGR01373 soxB sarcosine oxida 98.4 1.2E-05 2.7E-10 84.2 18.2 37 100-136 29-67 (407)
184 TIGR01789 lycopene_cycl lycope 98.4 9.6E-07 2.1E-11 90.9 9.6 35 103-137 1-38 (370)
185 PRK12409 D-amino acid dehydrog 98.4 1.5E-05 3.3E-10 83.6 18.8 44 102-145 2-48 (410)
186 PRK07333 2-octaprenyl-6-methox 98.4 1.3E-06 2.8E-11 91.5 10.7 145 101-245 1-169 (403)
187 PRK08849 2-octaprenyl-3-methyl 98.4 5.8E-07 1.3E-11 93.4 7.6 33 101-133 3-35 (384)
188 PRK08850 2-octaprenyl-6-methox 98.4 1.7E-06 3.8E-11 90.5 11.3 33 101-133 4-36 (405)
189 PRK07251 pyridine nucleotide-d 98.4 5.7E-06 1.2E-10 87.6 14.9 94 102-246 158-256 (438)
190 PRK05732 2-octaprenyl-6-methox 98.4 2.1E-06 4.5E-11 89.6 11.4 34 100-133 2-38 (395)
191 PRK06175 L-aspartate oxidase; 98.4 2E-06 4.4E-11 90.5 11.3 38 100-138 3-41 (433)
192 COG0445 GidA Flavin-dependent 98.4 1.2E-06 2.5E-11 90.2 8.7 138 100-242 3-157 (621)
193 PRK11259 solA N-methyltryptoph 98.4 5.3E-06 1.1E-10 85.9 14.0 36 101-136 3-38 (376)
194 TIGR01988 Ubi-OHases Ubiquinon 98.4 1.9E-06 4.1E-11 89.6 10.6 30 103-132 1-30 (385)
195 TIGR01350 lipoamide_DH dihydro 98.3 6.4E-06 1.4E-10 87.8 14.2 94 102-246 171-272 (461)
196 PRK06185 hypothetical protein; 98.3 2.2E-06 4.8E-11 89.8 10.5 35 99-133 4-38 (407)
197 TIGR01984 UbiH 2-polyprenyl-6- 98.3 2.8E-06 6.2E-11 88.2 11.0 142 103-244 1-163 (382)
198 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 7.7E-07 1.7E-11 92.6 6.7 32 101-132 2-33 (390)
199 PRK06617 2-octaprenyl-6-methox 98.3 3.8E-06 8.2E-11 87.0 11.3 32 102-133 2-33 (374)
200 PRK07045 putative monooxygenas 98.3 2E-06 4.3E-11 89.6 9.3 33 100-132 4-36 (388)
201 PRK09078 sdhA succinate dehydr 98.3 3E-05 6.5E-10 85.0 18.8 39 100-138 11-50 (598)
202 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.1E-06 2.4E-11 95.4 7.3 36 100-135 9-45 (538)
203 PRK07573 sdhA succinate dehydr 98.3 4.6E-06 1E-10 91.8 11.9 38 99-136 33-71 (640)
204 PRK08243 4-hydroxybenzoate 3-m 98.3 1.4E-06 3E-11 90.8 7.3 32 101-132 2-33 (392)
205 KOG0399 Glutamate synthase [Am 98.3 8.4E-06 1.8E-10 89.3 13.1 247 269-544 1785-2055(2142)
206 PRK07236 hypothetical protein; 98.3 6.6E-06 1.4E-10 85.6 12.2 32 101-132 6-37 (386)
207 PRK07588 hypothetical protein; 98.3 1.6E-06 3.4E-11 90.5 7.4 30 103-132 2-31 (391)
208 PRK08132 FAD-dependent oxidore 98.3 2.9E-06 6.3E-11 92.4 9.7 36 100-135 22-58 (547)
209 PF00070 Pyr_redox: Pyridine n 98.3 1.1E-05 2.4E-10 63.3 10.4 30 103-132 1-30 (80)
210 PTZ00139 Succinate dehydrogena 98.3 5.5E-05 1.2E-09 83.1 19.2 40 100-139 28-68 (617)
211 PLN00128 Succinate dehydrogena 98.3 5.6E-05 1.2E-09 83.1 19.3 39 100-138 49-88 (635)
212 PRK12835 3-ketosteroid-delta-1 98.2 4.5E-05 9.7E-10 83.3 18.3 46 100-145 10-57 (584)
213 PRK06126 hypothetical protein; 98.2 1.3E-05 2.9E-10 87.2 14.3 34 99-132 5-38 (545)
214 PRK07057 sdhA succinate dehydr 98.2 7E-05 1.5E-09 82.0 19.7 39 100-138 11-50 (591)
215 PRK12844 3-ketosteroid-delta-1 98.2 5E-06 1.1E-10 90.3 10.6 55 101-155 6-64 (557)
216 PRK09754 phenylpropionate diox 98.2 6.5E-06 1.4E-10 85.9 11.1 94 102-245 145-243 (396)
217 PRK00711 D-amino acid dehydrog 98.2 5.5E-05 1.2E-09 79.5 18.3 34 103-136 2-36 (416)
218 PLN02172 flavin-containing mon 98.2 2.3E-05 4.9E-10 82.9 15.2 105 269-378 10-178 (461)
219 PRK08958 sdhA succinate dehydr 98.2 4.9E-05 1.1E-09 83.1 18.2 38 101-138 7-45 (588)
220 PRK13512 coenzyme A disulfide 98.2 9.4E-06 2E-10 85.8 12.1 94 102-246 149-244 (438)
221 COG2081 Predicted flavoprotein 98.2 1.3E-05 2.7E-10 80.2 12.0 98 270-376 4-170 (408)
222 TIGR03364 HpnW_proposed FAD de 98.2 3.6E-05 7.8E-10 79.4 15.7 43 102-144 1-45 (365)
223 COG1233 Phytoene dehydrogenase 98.2 1.4E-06 3.1E-11 93.0 5.2 40 101-140 3-43 (487)
224 PRK04176 ribulose-1,5-biphosph 98.2 7.1E-05 1.5E-09 72.9 16.6 165 270-442 26-252 (257)
225 PRK06996 hypothetical protein; 98.2 6.1E-06 1.3E-10 86.2 9.8 35 99-133 9-47 (398)
226 TIGR01989 COQ6 Ubiquinone bios 98.2 3.4E-06 7.4E-11 89.2 7.7 31 102-132 1-35 (437)
227 PTZ00363 rab-GDP dissociation 98.2 1.1E-05 2.4E-10 84.4 11.3 61 310-377 232-292 (443)
228 PF13738 Pyr_redox_3: Pyridine 98.2 9.5E-06 2.1E-10 76.1 9.5 97 273-378 1-143 (203)
229 COG1249 Lpd Pyruvate/2-oxoglut 98.1 1.8E-05 3.8E-10 82.8 11.8 95 102-247 174-276 (454)
230 PRK06753 hypothetical protein; 98.1 5.2E-06 1.1E-10 85.9 7.9 30 103-132 2-31 (373)
231 PRK09564 coenzyme A disulfide 98.1 1.2E-05 2.6E-10 85.4 10.7 101 270-378 1-118 (444)
232 PRK08641 sdhA succinate dehydr 98.1 1.4E-05 3E-10 87.4 11.4 38 101-138 3-41 (589)
233 PTZ00306 NADH-dependent fumara 98.1 3.2E-05 6.9E-10 90.9 14.9 44 97-140 405-449 (1167)
234 TIGR03140 AhpF alkyl hydropero 98.1 2.9E-05 6.4E-10 83.7 13.6 101 268-377 211-325 (515)
235 PLN02985 squalene monooxygenas 98.1 9.7E-06 2.1E-10 87.0 9.8 36 98-133 40-75 (514)
236 PF04820 Trp_halogenase: Trypt 98.1 1.8E-05 3.9E-10 83.7 11.5 55 192-246 154-214 (454)
237 PRK04965 NADH:flavorubredoxin 98.1 1.5E-05 3.3E-10 82.6 10.8 94 102-245 142-241 (377)
238 COG1231 Monoamine oxidase [Ami 98.1 7.7E-06 1.7E-10 83.0 8.2 42 100-141 6-48 (450)
239 PRK01747 mnmC bifunctional tRN 98.1 4.4E-05 9.5E-10 85.1 15.0 44 101-144 260-306 (662)
240 PRK06912 acoL dihydrolipoamide 98.1 2.8E-05 6.1E-10 82.7 12.8 94 102-246 171-271 (458)
241 PRK15317 alkyl hydroperoxide r 98.1 2.9E-05 6.3E-10 83.8 13.0 100 269-377 211-324 (517)
242 TIGR03385 CoA_CoA_reduc CoA-di 98.1 2.7E-05 5.8E-10 82.2 12.2 95 102-246 138-236 (427)
243 KOG0029 Amine oxidase [Seconda 98.1 3.6E-06 7.8E-11 89.1 5.3 41 100-140 14-55 (501)
244 PRK05976 dihydrolipoamide dehy 98.1 2.7E-05 5.8E-10 83.2 12.0 94 102-246 181-284 (472)
245 PRK06416 dihydrolipoamide dehy 98.1 2.7E-05 5.9E-10 83.0 12.0 94 102-246 173-275 (462)
246 PRK06475 salicylate hydroxylas 98.1 3.6E-05 7.7E-10 80.5 12.5 31 102-132 3-33 (400)
247 PTZ00383 malate:quinone oxidor 98.1 9.9E-05 2.2E-09 78.6 15.6 38 99-136 43-83 (497)
248 PRK08626 fumarate reductase fl 98.1 2.2E-05 4.7E-10 86.8 11.0 34 100-133 4-37 (657)
249 PRK05868 hypothetical protein; 98.0 1.1E-05 2.4E-10 83.4 8.0 31 102-132 2-32 (372)
250 TIGR00031 UDP-GALP_mutase UDP- 98.0 5.1E-06 1.1E-10 84.9 5.5 41 102-142 2-43 (377)
251 PRK05249 soluble pyridine nucl 98.0 3.4E-05 7.5E-10 82.2 12.1 94 102-246 176-275 (461)
252 PRK07208 hypothetical protein; 98.0 4.7E-06 1E-10 89.3 5.4 43 99-141 2-45 (479)
253 COG2509 Uncharacterized FAD-de 98.0 1.8E-05 3.8E-10 80.0 8.9 83 287-377 149-232 (486)
254 TIGR00292 thiazole biosynthesi 98.0 6.6E-05 1.4E-09 72.8 12.7 173 269-442 21-251 (254)
255 PRK11101 glpA sn-glycerol-3-ph 98.0 0.00015 3.3E-09 78.7 16.7 35 101-135 6-40 (546)
256 COG0446 HcaD Uncharacterized N 98.0 3.3E-05 7.2E-10 80.9 11.3 94 101-244 136-238 (415)
257 PRK06847 hypothetical protein; 98.0 5.7E-05 1.2E-09 78.2 12.9 101 269-378 4-166 (375)
258 KOG2311 NAD/FAD-utilizing prot 98.0 1.1E-05 2.4E-10 81.3 7.1 41 100-140 27-69 (679)
259 PTZ00318 NADH dehydrogenase-li 98.0 4.9E-05 1.1E-09 80.0 12.5 92 102-244 174-281 (424)
260 PRK06116 glutathione reductase 98.0 4.4E-05 9.6E-10 81.1 12.0 94 102-246 168-268 (450)
261 TIGR01424 gluta_reduc_2 glutat 98.0 4E-05 8.7E-10 81.2 11.6 94 102-246 167-266 (446)
262 PRK08294 phenol 2-monooxygenas 98.0 2.9E-05 6.3E-10 85.6 10.7 34 99-132 30-64 (634)
263 PRK08255 salicylyl-CoA 5-hydro 98.0 5.6E-06 1.2E-10 93.3 5.1 32 103-134 2-35 (765)
264 PF03486 HI0933_like: HI0933-l 98.0 1.8E-05 4E-10 81.9 8.4 97 271-375 2-166 (409)
265 TIGR01421 gluta_reduc_1 glutat 98.0 6E-05 1.3E-09 79.9 12.1 94 102-246 167-268 (450)
266 PRK12770 putative glutamate sy 98.0 3.9E-05 8.3E-10 78.7 10.3 106 266-376 15-132 (352)
267 PLN02507 glutathione reductase 98.0 5.9E-05 1.3E-09 80.9 12.1 94 102-246 204-303 (499)
268 PRK06370 mercuric reductase; V 98.0 5.9E-05 1.3E-09 80.4 12.1 94 102-246 172-274 (463)
269 PRK07845 flavoprotein disulfid 98.0 5.9E-05 1.3E-09 80.4 12.0 94 102-246 178-277 (466)
270 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 5.4E-05 1.2E-09 78.3 10.9 33 103-135 2-35 (433)
271 PRK07818 dihydrolipoamide dehy 97.9 7E-05 1.5E-09 79.9 12.1 94 102-246 173-276 (466)
272 TIGR02053 MerA mercuric reduct 97.9 8.2E-05 1.8E-09 79.4 12.6 94 102-246 167-269 (463)
273 PRK14694 putative mercuric red 97.9 9.7E-05 2.1E-09 78.8 12.9 93 102-246 179-276 (468)
274 PLN02576 protoporphyrinogen ox 97.9 1.3E-05 2.8E-10 86.4 6.1 41 101-141 12-54 (496)
275 PRK07512 L-aspartate oxidase; 97.9 0.00029 6.4E-09 75.9 16.3 35 99-135 7-41 (513)
276 PRK07236 hypothetical protein; 97.9 7.2E-05 1.6E-09 77.8 11.2 102 268-377 5-156 (386)
277 TIGR01811 sdhA_Bsu succinate d 97.9 0.00026 5.7E-09 77.6 16.0 33 104-136 1-34 (603)
278 PLN02268 probable polyamine ox 97.9 1.2E-05 2.6E-10 85.1 5.1 39 103-141 2-41 (435)
279 PTZ00052 thioredoxin reductase 97.9 8.6E-05 1.9E-09 79.7 11.7 94 102-246 183-281 (499)
280 TIGR02374 nitri_red_nirB nitri 97.9 5.1E-05 1.1E-09 85.8 10.4 95 102-246 141-241 (785)
281 PRK07538 hypothetical protein; 97.9 8.8E-05 1.9E-09 77.9 11.5 30 103-132 2-31 (413)
282 PRK06327 dihydrolipoamide dehy 97.9 9E-05 2E-09 79.2 11.7 94 102-246 184-287 (475)
283 TIGR03219 salicylate_mono sali 97.9 2.9E-05 6.3E-10 81.5 7.9 33 103-135 2-36 (414)
284 PRK12779 putative bifunctional 97.9 5.9E-05 1.3E-09 86.3 10.8 93 268-377 305-407 (944)
285 PRK06115 dihydrolipoamide dehy 97.9 0.00014 2.9E-09 77.6 13.0 94 102-246 175-279 (466)
286 KOG2820 FAD-dependent oxidored 97.9 0.0002 4.4E-09 69.6 12.6 35 100-134 6-40 (399)
287 COG0562 Glf UDP-galactopyranos 97.9 1.6E-05 3.4E-10 76.7 5.1 42 101-142 1-43 (374)
288 TIGR02733 desat_CrtD C-3',4' d 97.9 1.3E-05 2.9E-10 86.1 5.2 40 102-141 2-42 (492)
289 TIGR02730 carot_isom carotene 97.9 1.3E-05 2.9E-10 86.1 5.1 57 310-374 229-285 (493)
290 TIGR00562 proto_IX_ox protopor 97.9 1.4E-05 3.1E-10 85.2 4.9 40 102-141 3-47 (462)
291 TIGR01423 trypano_reduc trypan 97.8 0.00011 2.5E-09 78.3 11.6 94 102-246 188-291 (486)
292 PRK11883 protoporphyrinogen ox 97.8 1.5E-05 3.2E-10 84.7 4.9 39 103-141 2-43 (451)
293 PRK07846 mycothione reductase; 97.8 0.00011 2.5E-09 77.8 11.5 94 102-247 167-266 (451)
294 TIGR03169 Nterm_to_SelD pyridi 97.8 6.9E-05 1.5E-09 77.3 9.6 97 271-379 1-111 (364)
295 COG1252 Ndh NADH dehydrogenase 97.8 0.0001 2.3E-09 75.3 10.6 101 269-380 3-116 (405)
296 COG3380 Predicted NAD/FAD-depe 97.8 2.1E-05 4.5E-10 74.1 4.9 39 102-140 2-41 (331)
297 PRK07233 hypothetical protein; 97.8 1.6E-05 3.5E-10 83.9 4.9 38 103-140 1-39 (434)
298 PRK14989 nitrite reductase sub 97.8 8.4E-05 1.8E-09 84.2 10.8 98 270-378 4-116 (847)
299 TIGR01438 TGR thioredoxin and 97.8 0.00013 2.7E-09 78.1 11.4 94 102-246 181-282 (484)
300 TIGR01316 gltA glutamate synth 97.8 5.3E-05 1.2E-09 80.3 8.4 92 268-377 132-233 (449)
301 TIGR02485 CobZ_N-term precorri 97.8 0.00036 7.8E-09 73.7 14.7 57 311-373 124-181 (432)
302 COG0578 GlpA Glycerol-3-phosph 97.8 0.00029 6.4E-09 74.2 13.6 41 100-140 11-52 (532)
303 PRK11749 dihydropyrimidine deh 97.8 6.1E-05 1.3E-09 80.2 8.5 92 267-376 138-239 (457)
304 TIGR01318 gltD_gamma_fam gluta 97.8 7.6E-05 1.7E-09 79.4 9.0 92 268-377 140-240 (467)
305 PRK10262 thioredoxin reductase 97.8 0.00035 7.7E-09 70.6 13.5 100 268-378 5-120 (321)
306 TIGR02734 crtI_fam phytoene de 97.8 2E-05 4.3E-10 85.0 4.4 57 310-374 219-275 (502)
307 PLN02568 polyamine oxidase 97.8 3E-05 6.5E-10 83.5 5.6 41 100-140 4-50 (539)
308 PRK08010 pyridine nucleotide-d 97.8 0.00026 5.6E-09 75.0 12.6 93 102-246 159-257 (441)
309 PRK13369 glycerol-3-phosphate 97.8 3.1E-05 6.7E-10 83.3 5.7 38 98-135 3-40 (502)
310 PTZ00058 glutathione reductase 97.7 0.00025 5.5E-09 76.7 12.3 95 101-246 237-339 (561)
311 PRK06834 hypothetical protein; 97.7 0.00039 8.5E-09 74.4 13.6 100 270-378 4-159 (488)
312 TIGR03452 mycothione_red mycot 97.7 0.00022 4.7E-09 75.7 11.6 93 102-246 170-268 (452)
313 PF00743 FMO-like: Flavin-bind 97.7 0.00021 4.5E-09 76.8 11.4 142 270-419 2-192 (531)
314 PRK09853 putative selenate red 97.7 0.00014 3E-09 82.5 10.4 90 268-376 538-636 (1019)
315 PRK14727 putative mercuric red 97.7 0.00028 6.2E-09 75.5 12.5 93 102-246 189-286 (479)
316 TIGR02032 GG-red-SF geranylger 97.7 0.0003 6.4E-09 70.0 11.9 98 271-376 2-149 (295)
317 PRK06292 dihydrolipoamide dehy 97.7 0.00029 6.3E-09 75.1 12.6 94 102-247 170-272 (460)
318 PRK12834 putative FAD-binding 97.7 3.6E-05 7.8E-10 83.7 5.7 53 390-442 484-548 (549)
319 PRK13748 putative mercuric red 97.7 0.00027 5.8E-09 77.4 12.3 93 102-246 271-368 (561)
320 PRK12837 3-ketosteroid-delta-1 97.7 3.7E-05 8E-10 82.9 5.4 54 390-443 449-511 (513)
321 PRK12266 glpD glycerol-3-phosp 97.7 4.4E-05 9.5E-10 82.1 5.7 37 99-135 4-40 (508)
322 COG2072 TrkA Predicted flavopr 97.7 0.001 2.2E-08 70.2 15.8 140 270-420 9-185 (443)
323 KOG1336 Monodehydroascorbate/f 97.7 0.00021 4.5E-09 72.9 10.0 98 101-247 213-317 (478)
324 TIGR02731 phytoene_desat phyto 97.7 3.6E-05 7.9E-10 81.8 5.0 62 310-373 213-274 (453)
325 PF01134 GIDA: Glucose inhibit 97.7 0.00043 9.3E-09 70.6 12.2 95 271-373 1-150 (392)
326 COG3349 Uncharacterized conser 97.7 3.8E-05 8.1E-10 79.5 4.6 40 103-142 2-42 (485)
327 TIGR03143 AhpF_homolog putativ 97.7 0.00043 9.3E-09 75.4 13.1 97 270-378 5-117 (555)
328 PRK12416 protoporphyrinogen ox 97.7 3.7E-05 8.1E-10 82.0 4.8 40 102-141 2-48 (463)
329 PLN02852 ferredoxin-NADP+ redu 97.7 0.00014 3E-09 77.1 8.6 92 267-376 24-127 (491)
330 PRK06467 dihydrolipoamide dehy 97.7 0.00029 6.4E-09 75.2 11.3 31 102-132 175-205 (471)
331 PF07992 Pyr_redox_2: Pyridine 97.7 5.9E-05 1.3E-09 70.5 5.2 143 271-423 1-200 (201)
332 PRK07045 putative monooxygenas 97.6 0.00057 1.2E-08 71.1 13.0 102 270-377 6-167 (388)
333 PLN02676 polyamine oxidase 97.6 5.7E-05 1.2E-09 80.7 5.4 42 100-141 25-68 (487)
334 PLN02529 lysine-specific histo 97.6 5.9E-05 1.3E-09 83.3 5.6 41 100-140 159-200 (738)
335 KOG2614 Kynurenine 3-monooxyge 97.6 0.0005 1.1E-08 69.1 11.4 31 102-132 3-33 (420)
336 PRK08163 salicylate hydroxylas 97.6 0.00053 1.1E-08 71.5 12.3 101 269-377 4-168 (396)
337 TIGR01317 GOGAT_sm_gam glutama 97.6 0.00019 4.2E-09 76.7 9.0 89 268-374 142-239 (485)
338 KOG2853 Possible oxidoreductas 97.6 0.00068 1.5E-08 66.0 11.6 46 97-142 82-141 (509)
339 PRK05868 hypothetical protein; 97.6 0.00061 1.3E-08 70.5 12.3 100 270-377 2-162 (372)
340 PLN02546 glutathione reductase 97.6 0.00041 8.8E-09 75.2 11.3 94 102-246 253-353 (558)
341 PRK01438 murD UDP-N-acetylmura 97.6 0.0004 8.6E-09 74.5 11.1 129 102-298 17-154 (480)
342 PRK08773 2-octaprenyl-3-methyl 97.6 0.00062 1.3E-08 70.9 12.1 101 269-378 6-172 (392)
343 PRK09126 hypothetical protein; 97.6 0.00094 2E-08 69.6 13.3 101 270-378 4-170 (392)
344 PRK12831 putative oxidoreducta 97.6 0.00024 5.1E-09 75.6 8.7 95 267-377 138-243 (464)
345 KOG1298 Squalene monooxygenase 97.5 0.0002 4.4E-09 70.7 7.1 35 98-132 42-76 (509)
346 COG0665 DadA Glycine/D-amino a 97.5 0.0001 2.2E-09 76.7 5.4 37 100-136 3-39 (387)
347 PRK07364 2-octaprenyl-6-methox 97.5 0.0015 3.3E-08 68.6 14.2 104 269-377 18-183 (415)
348 PRK12810 gltD glutamate syntha 97.5 0.00033 7.2E-09 74.7 9.3 89 268-374 142-239 (471)
349 PRK08132 FAD-dependent oxidore 97.5 0.00088 1.9E-08 73.1 12.7 104 269-377 23-187 (547)
350 PF01494 FAD_binding_3: FAD bi 97.5 0.00082 1.8E-08 68.6 11.9 103 271-377 3-174 (356)
351 PLN02661 Putative thiazole syn 97.5 0.0029 6.3E-08 63.6 15.0 172 269-442 92-325 (357)
352 PRK12809 putative oxidoreducta 97.5 0.00028 6E-09 78.2 8.6 91 268-376 309-408 (639)
353 PRK12778 putative bifunctional 97.5 0.00038 8.2E-09 78.7 9.6 93 268-377 430-532 (752)
354 PLN02463 lycopene beta cyclase 97.5 0.00092 2E-08 70.4 11.7 96 271-376 30-170 (447)
355 PRK07333 2-octaprenyl-6-methox 97.5 0.0014 3.1E-08 68.4 13.1 98 271-377 3-169 (403)
356 PRK08849 2-octaprenyl-3-methyl 97.5 0.0011 2.4E-08 68.8 12.1 100 271-378 5-170 (384)
357 PRK05714 2-octaprenyl-3-methyl 97.5 0.0011 2.4E-08 69.4 12.1 98 271-377 4-170 (405)
358 KOG1335 Dihydrolipoamide dehyd 97.5 0.00048 1E-08 68.1 8.4 96 101-247 211-318 (506)
359 PTZ00188 adrenodoxin reductase 97.5 0.00055 1.2E-08 71.6 9.4 92 267-376 37-139 (506)
360 COG1232 HemY Protoporphyrinoge 97.4 0.00013 2.7E-09 75.8 4.7 38 103-140 2-42 (444)
361 PRK06753 hypothetical protein; 97.4 0.0013 2.9E-08 67.9 12.5 99 271-377 2-154 (373)
362 PRK12814 putative NADPH-depend 97.4 0.00035 7.5E-09 77.5 8.4 91 268-376 192-291 (652)
363 PRK06184 hypothetical protein; 97.4 0.0012 2.6E-08 71.2 12.4 100 270-375 4-168 (502)
364 PRK06183 mhpA 3-(3-hydroxyphen 97.4 0.0013 2.8E-08 71.6 12.6 104 270-377 11-176 (538)
365 PLN02328 lysine-specific histo 97.4 0.00017 3.6E-09 80.3 5.8 41 100-140 237-278 (808)
366 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.0013 2.8E-08 68.3 12.2 98 271-376 1-163 (382)
367 PRK12769 putative oxidoreducta 97.4 0.00037 8E-09 77.5 8.5 90 268-375 326-424 (654)
368 TIGR02732 zeta_caro_desat caro 97.4 0.00014 3E-09 77.7 4.8 38 103-140 1-39 (474)
369 COG1635 THI4 Ribulose 1,5-bisp 97.4 0.0043 9.4E-08 57.1 13.6 165 268-441 29-256 (262)
370 PTZ00153 lipoamide dehydrogena 97.4 0.0011 2.4E-08 73.0 11.8 31 102-132 313-343 (659)
371 PRK07588 hypothetical protein; 97.4 0.0015 3.2E-08 68.1 12.4 98 271-378 2-161 (391)
372 PRK12775 putative trifunctiona 97.4 0.00047 1E-08 79.8 9.3 93 269-377 430-532 (1006)
373 PTZ00367 squalene epoxidase; P 97.4 0.00016 3.5E-09 78.3 5.2 34 100-133 32-65 (567)
374 PLN02464 glycerol-3-phosphate 97.4 0.00017 3.8E-09 79.3 5.5 40 100-139 70-110 (627)
375 PRK13339 malate:quinone oxidor 97.4 0.00021 4.6E-09 75.9 5.9 45 100-144 5-56 (497)
376 KOG1399 Flavin-containing mono 97.4 0.0037 8E-08 65.4 14.9 107 268-378 5-158 (448)
377 PRK01438 murD UDP-N-acetylmura 97.4 0.00057 1.2E-08 73.2 9.2 81 268-380 15-95 (480)
378 PF06039 Mqo: Malate:quinone o 97.4 0.0025 5.5E-08 65.4 13.1 61 312-374 183-243 (488)
379 PRK08244 hypothetical protein; 97.4 0.0012 2.7E-08 71.0 11.5 101 270-376 3-160 (493)
380 KOG0685 Flavin-containing amin 97.4 0.0002 4.4E-09 72.9 4.9 40 102-141 22-63 (498)
381 PRK06567 putative bifunctional 97.4 0.00061 1.3E-08 76.6 9.0 35 267-301 381-415 (1028)
382 PLN02927 antheraxanthin epoxid 97.4 0.00023 4.9E-09 77.8 5.6 34 99-132 79-112 (668)
383 TIGR02462 pyranose_ox pyranose 97.4 0.0002 4.3E-09 76.7 5.0 39 102-140 1-40 (544)
384 PRK07608 ubiquinone biosynthes 97.4 0.0023 5E-08 66.5 12.9 98 270-377 6-169 (388)
385 TIGR03315 Se_ygfK putative sel 97.4 0.00061 1.3E-08 77.7 9.0 89 269-376 537-634 (1012)
386 PRK08013 oxidoreductase; Provi 97.3 0.002 4.3E-08 67.4 12.4 100 270-377 4-170 (400)
387 PLN02612 phytoene desaturase 97.3 0.00031 6.7E-09 76.6 6.4 56 310-372 308-363 (567)
388 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00016 3.6E-09 72.1 3.7 65 313-378 196-261 (296)
389 PLN02487 zeta-carotene desatur 97.3 0.00031 6.7E-09 76.0 6.0 40 101-140 75-115 (569)
390 PRK08850 2-octaprenyl-6-methox 97.3 0.0023 5.1E-08 66.9 12.4 100 270-377 5-170 (405)
391 PRK06475 salicylate hydroxylas 97.3 0.0031 6.7E-08 65.9 12.6 103 270-377 3-169 (400)
392 KOG2844 Dimethylglycine dehydr 97.3 0.0013 2.9E-08 69.4 9.5 68 294-373 173-241 (856)
393 TIGR01988 Ubi-OHases Ubiquinon 97.3 0.0028 6E-08 65.8 12.2 98 271-377 1-165 (385)
394 PRK07190 hypothetical protein; 97.2 0.0033 7.1E-08 67.3 12.8 97 270-375 6-165 (487)
395 COG0492 TrxB Thioredoxin reduc 97.2 0.0039 8.5E-08 62.1 12.4 98 271-379 5-119 (305)
396 PRK12771 putative glutamate sy 97.2 0.00091 2E-08 73.1 8.7 91 267-376 135-235 (564)
397 COG1053 SdhA Succinate dehydro 97.2 0.00034 7.4E-09 75.4 5.1 37 100-136 5-42 (562)
398 PLN03000 amine oxidase 97.2 0.00036 7.8E-09 77.8 5.2 42 100-141 183-225 (881)
399 PF06100 Strep_67kDa_ant: Stre 97.2 0.00089 1.9E-08 69.3 7.6 95 280-378 174-277 (500)
400 PRK05192 tRNA uridine 5-carbox 97.2 0.0042 9.1E-08 67.0 12.9 95 271-373 6-155 (618)
401 KOG2404 Fumarate reductase, fl 97.2 0.00092 2E-08 64.6 7.0 85 288-376 117-207 (477)
402 COG0493 GltD NADPH-dependent g 97.2 0.0009 1.9E-08 70.2 7.6 92 268-377 122-223 (457)
403 PRK06617 2-octaprenyl-6-methox 97.2 0.0047 1E-07 63.9 12.9 99 271-378 3-163 (374)
404 PF01946 Thi4: Thi4 family; PD 97.2 0.0038 8.3E-08 57.7 10.6 107 270-378 18-168 (230)
405 PRK05732 2-octaprenyl-6-methox 97.2 0.0051 1.1E-07 64.0 13.1 100 270-377 4-171 (395)
406 TIGR01320 mal_quin_oxido malat 97.2 0.00039 8.4E-09 74.2 4.6 35 102-136 1-38 (483)
407 PLN02976 amine oxidase 97.1 0.00049 1.1E-08 79.5 5.3 43 99-141 691-734 (1713)
408 PRK13984 putative oxidoreducta 97.1 0.0013 2.9E-08 72.5 8.7 91 267-375 281-380 (604)
409 TIGR03219 salicylate_mono sali 97.1 0.004 8.6E-08 65.4 11.9 98 271-376 2-160 (414)
410 PRK05257 malate:quinone oxidor 97.1 0.0005 1.1E-08 73.5 4.7 37 100-136 4-43 (494)
411 TIGR01790 carotene-cycl lycope 97.1 0.0056 1.2E-07 63.7 12.5 96 271-375 1-141 (388)
412 PRK07494 2-octaprenyl-6-methox 97.1 0.0073 1.6E-07 62.8 13.4 99 270-377 8-169 (388)
413 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.0053 1.1E-07 63.9 12.3 100 270-377 6-171 (391)
414 PRK10157 putative oxidoreducta 97.1 0.0058 1.3E-07 64.4 12.7 96 271-375 7-164 (428)
415 PRK02106 choline dehydrogenase 97.1 0.00054 1.2E-08 74.8 5.1 35 99-133 3-38 (560)
416 TIGR01372 soxA sarcosine oxida 97.1 0.0053 1.2E-07 71.4 13.4 107 269-377 163-288 (985)
417 TIGR01789 lycopene_cycl lycope 97.1 0.0026 5.6E-08 65.6 9.3 94 271-376 1-139 (370)
418 PRK06126 hypothetical protein; 97.0 0.0072 1.6E-07 65.9 13.3 104 269-375 7-188 (545)
419 COG0644 FixC Dehydrogenases (f 97.0 0.0073 1.6E-07 63.0 12.2 96 271-374 5-151 (396)
420 PLN02697 lycopene epsilon cycl 97.0 0.0066 1.4E-07 65.2 11.9 96 271-375 110-248 (529)
421 COG3573 Predicted oxidoreducta 97.0 0.00091 2E-08 64.9 4.7 40 101-140 5-47 (552)
422 TIGR00136 gidA glucose-inhibit 97.0 0.011 2.4E-07 63.7 13.3 98 271-375 2-154 (617)
423 PRK09897 hypothetical protein; 96.9 0.011 2.4E-07 63.6 13.1 99 270-376 2-167 (534)
424 TIGR00275 flavoprotein, HI0933 96.9 0.0064 1.4E-07 63.5 11.1 93 273-375 1-160 (400)
425 PRK08243 4-hydroxybenzoate 3-m 96.9 0.011 2.3E-07 61.7 12.8 103 270-378 3-166 (392)
426 PRK07538 hypothetical protein; 96.9 0.013 2.9E-07 61.5 13.5 104 271-377 2-167 (413)
427 TIGR01989 COQ6 Ubiquinone bios 96.9 0.011 2.4E-07 62.5 12.6 102 271-378 2-186 (437)
428 PF12831 FAD_oxidored: FAD dep 96.9 0.001 2.3E-08 70.0 4.8 98 271-373 1-148 (428)
429 PRK06185 hypothetical protein; 96.9 0.011 2.5E-07 61.7 12.5 103 270-376 7-170 (407)
430 COG2907 Predicted NAD/FAD-bind 96.8 0.00092 2E-08 65.4 3.6 38 102-140 9-47 (447)
431 KOG2495 NADH-dehydrogenase (ub 96.8 0.0081 1.8E-07 60.7 10.2 110 268-380 54-175 (491)
432 PRK06996 hypothetical protein; 96.8 0.012 2.7E-07 61.4 12.3 99 270-374 12-173 (398)
433 COG1251 NirB NAD(P)H-nitrite r 96.8 0.0049 1.1E-07 66.3 9.0 94 103-245 147-245 (793)
434 PRK11728 hydroxyglutarate oxid 96.8 0.012 2.7E-07 61.2 11.8 32 271-302 4-37 (393)
435 PRK10015 oxidoreductase; Provi 96.7 0.019 4.1E-07 60.5 12.9 97 271-376 7-165 (429)
436 PF04820 Trp_halogenase: Trypt 96.7 0.012 2.6E-07 62.3 11.4 56 314-377 158-213 (454)
437 TIGR02023 BchP-ChlP geranylger 96.7 0.023 5.1E-07 59.0 13.3 102 271-376 2-156 (388)
438 TIGR02360 pbenz_hydroxyl 4-hyd 96.7 0.022 4.8E-07 59.3 12.9 35 269-303 2-36 (390)
439 KOG1276 Protoporphyrinogen oxi 96.7 0.0017 3.7E-08 65.4 4.2 40 101-140 11-53 (491)
440 PRK11445 putative oxidoreducta 96.7 0.02 4.3E-07 58.7 12.3 98 271-377 3-159 (351)
441 TIGR00137 gid_trmFO tRNA:m(5)U 96.7 0.0059 1.3E-07 63.4 8.1 35 271-305 2-36 (433)
442 KOG2852 Possible oxidoreductas 96.6 0.02 4.2E-07 54.9 10.6 35 100-134 9-49 (380)
443 PRK14106 murD UDP-N-acetylmura 96.6 0.016 3.5E-07 61.6 11.6 31 102-132 6-36 (450)
444 PRK08294 phenol 2-monooxygenas 96.6 0.039 8.5E-07 61.1 14.9 107 270-377 33-212 (634)
445 KOG2960 Protein involved in th 96.6 0.00058 1.3E-08 62.0 0.4 39 102-140 77-119 (328)
446 KOG4254 Phytoene desaturase [C 96.6 0.0026 5.6E-08 64.4 4.7 48 100-147 13-61 (561)
447 KOG1346 Programmed cell death 96.6 0.0086 1.9E-07 60.0 8.2 95 101-245 347-451 (659)
448 PLN02927 antheraxanthin epoxid 96.6 0.023 5E-07 62.4 12.4 36 267-302 79-114 (668)
449 PF13454 NAD_binding_9: FAD-NA 96.5 0.023 5.1E-07 50.7 10.3 41 325-373 114-155 (156)
450 COG1148 HdrA Heterodisulfide r 96.5 0.0099 2.1E-07 60.9 8.4 72 269-340 124-207 (622)
451 TIGR02028 ChlP geranylgeranyl 96.5 0.046 9.9E-07 57.1 13.7 33 271-303 2-34 (398)
452 PF05834 Lycopene_cycl: Lycope 96.4 0.034 7.3E-07 57.5 12.3 95 272-376 2-143 (374)
453 PRK11259 solA N-methyltryptoph 96.4 0.033 7.1E-07 57.6 12.2 32 271-302 5-36 (376)
454 COG2303 BetA Choline dehydroge 96.4 0.0032 6.9E-08 68.2 4.4 35 99-133 5-39 (542)
455 PLN00093 geranylgeranyl diphos 96.4 0.088 1.9E-06 55.8 15.2 48 255-302 25-72 (450)
456 PLN02785 Protein HOTHEAD 96.4 0.0045 9.6E-08 67.6 5.5 33 100-133 54-86 (587)
457 PF13450 NAD_binding_8: NAD(P) 96.3 0.0069 1.5E-07 45.7 4.5 31 274-304 1-31 (68)
458 TIGR01810 betA choline dehydro 96.3 0.0033 7.2E-08 68.3 3.9 60 315-378 199-258 (532)
459 PRK02705 murD UDP-N-acetylmura 96.3 0.016 3.4E-07 61.8 8.9 31 103-133 2-32 (459)
460 PRK11101 glpA sn-glycerol-3-ph 96.2 0.033 7.2E-07 60.6 11.3 33 270-302 7-39 (546)
461 COG0445 GidA Flavin-dependent 96.2 0.016 3.5E-07 60.5 7.8 96 271-373 6-156 (621)
462 COG3380 Predicted NAD/FAD-depe 96.1 0.04 8.8E-07 52.5 9.6 94 271-373 3-158 (331)
463 PLN02985 squalene monooxygenas 96.0 0.077 1.7E-06 57.2 12.3 33 270-302 44-76 (514)
464 COG3634 AhpF Alkyl hydroperoxi 95.9 0.021 4.5E-07 56.1 6.7 99 269-374 211-324 (520)
465 TIGR03862 flavo_PP4765 unchara 95.8 0.13 2.7E-06 52.8 12.6 107 124-244 1-142 (376)
466 KOG0042 Glycerol-3-phosphate d 95.8 0.0044 9.5E-08 64.2 1.7 41 99-139 65-106 (680)
467 PRK12266 glpD glycerol-3-phosp 95.7 0.12 2.5E-06 55.9 12.3 33 270-302 7-39 (508)
468 KOG1238 Glucose dehydrogenase/ 95.6 0.013 2.7E-07 62.6 4.5 35 98-132 54-89 (623)
469 KOG0404 Thioredoxin reductase 95.6 0.096 2.1E-06 48.4 9.2 98 269-377 8-126 (322)
470 KOG2665 Predicted FAD-dependen 95.5 0.018 3.9E-07 55.8 4.5 37 100-136 47-86 (453)
471 PRK05335 tRNA (uracil-5-)-meth 95.2 0.025 5.5E-07 58.5 5.1 35 270-304 3-37 (436)
472 PRK14106 murD UDP-N-acetylmura 95.1 0.076 1.6E-06 56.4 8.5 80 268-378 4-83 (450)
473 PRK08401 L-aspartate oxidase; 95.0 0.26 5.6E-06 52.6 12.3 32 270-301 2-33 (466)
474 PF02558 ApbA: Ketopantoate re 94.9 0.11 2.5E-06 45.9 7.7 29 104-132 1-29 (151)
475 KOG2311 NAD/FAD-utilizing prot 94.8 0.17 3.7E-06 52.1 9.4 31 271-301 30-60 (679)
476 PF13434 K_oxygenase: L-lysine 94.8 0.11 2.4E-06 52.8 8.3 105 271-378 4-162 (341)
477 COG4529 Uncharacterized protei 94.8 0.26 5.6E-06 51.2 10.7 35 270-304 2-39 (474)
478 KOG3855 Monooxygenase involved 94.6 0.031 6.7E-07 56.3 3.6 33 100-132 35-71 (481)
479 TIGR00551 nadB L-aspartate oxi 94.5 0.41 8.9E-06 51.4 12.4 55 316-374 134-188 (488)
480 KOG2614 Kynurenine 3-monooxyge 94.5 0.2 4.2E-06 50.9 9.0 34 270-303 3-36 (420)
481 PRK08275 putative oxidoreducta 94.5 0.46 1E-05 51.9 12.9 63 311-375 138-200 (554)
482 PF00996 GDI: GDP dissociation 94.5 0.053 1.1E-06 56.6 5.2 43 99-141 2-45 (438)
483 PRK07804 L-aspartate oxidase; 94.4 0.43 9.4E-06 51.9 12.4 33 270-302 17-49 (541)
484 TIGR01812 sdhA_frdA_Gneg succi 94.3 0.48 1E-05 51.9 12.5 31 272-302 2-32 (566)
485 KOG2820 FAD-dependent oxidored 94.3 0.62 1.3E-05 46.1 11.5 50 317-373 160-210 (399)
486 PRK06263 sdhA succinate dehydr 94.3 0.41 8.9E-06 52.2 11.8 62 310-373 134-195 (543)
487 PRK06175 L-aspartate oxidase; 94.1 0.58 1.3E-05 49.4 12.2 59 312-375 130-189 (433)
488 KOG0029 Amine oxidase [Seconda 94.1 0.071 1.5E-06 56.9 5.3 40 267-306 13-52 (501)
489 KOG1800 Ferredoxin/adrenodoxin 94.0 0.21 4.5E-06 50.0 7.9 90 267-375 19-120 (468)
490 PRK08255 salicylyl-CoA 5-hydro 94.0 0.13 2.8E-06 58.4 7.5 33 271-303 2-36 (765)
491 COG1206 Gid NAD(FAD)-utilizing 94.0 0.052 1.1E-06 53.1 3.5 31 102-132 4-34 (439)
492 PF01593 Amino_oxidase: Flavin 93.9 0.054 1.2E-06 56.6 4.0 30 111-140 1-31 (450)
493 PRK06854 adenylylsulfate reduc 93.7 0.8 1.7E-05 50.6 12.9 47 325-373 147-193 (608)
494 COG0654 UbiH 2-polyprenyl-6-me 93.7 0.081 1.8E-06 55.0 4.7 32 270-301 3-34 (387)
495 PRK01710 murD UDP-N-acetylmura 93.6 0.57 1.2E-05 49.9 11.0 31 102-132 15-45 (458)
496 PRK07573 sdhA succinate dehydr 93.5 0.89 1.9E-05 50.5 12.8 48 324-373 183-230 (640)
497 PRK11883 protoporphyrinogen ox 93.4 0.099 2.1E-06 55.4 5.0 36 270-305 1-38 (451)
498 PRK06452 sdhA succinate dehydr 93.4 0.89 1.9E-05 49.8 12.5 47 324-372 149-195 (566)
499 COG1004 Ugd Predicted UDP-gluc 93.4 0.1 2.2E-06 52.7 4.6 31 103-133 2-32 (414)
500 PF01210 NAD_Gly3P_dh_N: NAD-d 93.4 0.098 2.1E-06 46.8 4.2 31 103-133 1-31 (157)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.8e-77 Score=616.02 Aligned_cols=426 Identities=37% Similarity=0.605 Sum_probs=388.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
..+||++|||+||||..||.+++++|.+|++||+. .+||+|+|.||+|||.|++.+..++.+..... .+|+....+.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~--~~Gi~~~~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAK--EYGISAEVPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccc--ccceecCCCC
Confidence 35699999999999999999999999999999996 89999999999999999999998877643221 6888877778
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEcc--ceEEEeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT--DNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~--~~~~~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
+|++++..+++.....+...+...++..||+++.|.+.+.++++|.+.+ .++++++++|||||++|..||++++++..
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~ 159 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGAR 159 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCe
Confidence 9999999999997788888888899999999999999999999999976 47899999999999999999999999999
Q ss_pred EecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 256 VITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 256 v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
++++++.+.+..+|++++|||||++|+|+|..|+++|.+||++++.+++||.+|+++++.+.+.|++ .|+++++++.++
T Consensus 160 ~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~-~gv~i~~~~~v~ 238 (454)
T COG1249 160 ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEK-GGVKILLNTKVT 238 (454)
T ss_pred EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHh-CCeEEEccceEE
Confidence 9999887777799999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEE
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 414 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vy 414 (556)
+++..+++ +.++++++. ..++++|.|++|+|++||++.|++++.|++. ++|+|.||.+++ |++||||
T Consensus 239 ~~~~~~~~--v~v~~~~g~----~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~------Tnvp~Iy 306 (454)
T COG1249 239 AVEKKDDG--VLVTLEDGE----GGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMT------TNVPGIY 306 (454)
T ss_pred EEEecCCe--EEEEEecCC----CCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccc------cCCCCEE
Confidence 99876444 778887762 1278999999999999999999999999998 669999996666 7899999
Q ss_pred EecccCCCCCcHHHHHHHHHHHHHHHhC-CCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecccc
Q 008714 415 CIGDANGKMMLAHAASAQGISVVEQVTG-RDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 493 (556)
Q Consensus 415 a~GD~~~~~~~~~~A~~qg~~aa~~i~g-~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~ 493 (556)
|+|||++.++|+|.|..||++|++||+| .....+|..+|+++|++||+++||+||+||+++ +++|++.+.+|..+
T Consensus 307 A~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~----g~~~~~~~~~f~~~ 382 (454)
T COG1249 307 AIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEA----GIDYKVGKFPFAAN 382 (454)
T ss_pred EeeccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhc----CCceEEEEeecccc
Confidence 9999999999999999999999999997 555678999999999999999999999999875 88999999999999
Q ss_pred chhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhccchh
Q 008714 494 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMTFVSW 545 (556)
Q Consensus 494 ~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~~~~~ 545 (556)
.|+...++++||+|+++|+ .+++|||+|++|+.|.++|+.++ +.|-+..+
T Consensus 383 ~ra~~~~~~~G~~Klv~d~-~t~~IlGahivg~~A~ElI~~~~-~a~~~g~t 432 (454)
T COG1249 383 GRAITMGETDGFVKLVVDK-ETGRILGAHIVGPGASELINEIA-LAIEMGAT 432 (454)
T ss_pred hhHHhccCCceEEEEEEEC-CCCeEEEEEEECCCHHHHHHHHH-HHHHCCCc
Confidence 9999999999999999998 68999999999999999999994 44444443
No 2
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=6e-75 Score=553.10 Aligned_cols=427 Identities=41% Similarity=0.637 Sum_probs=397.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.+|||+|||+||+|..||++++++|++.++||+ +.+||+|++.||+|||+|++.+..++.++.. ++...|++.....+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~-~~~~rGi~vs~~~~ 116 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHE-DFASRGIDVSSVSL 116 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhh-HHHhcCccccceec
Confidence 469999999999999999999999999999999 9999999999999999999999999988776 88999999988899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEcc----ceEEEeCeEEEeCCCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT----DNIVTAKDIIIATGSVPFVPKGIEVDGK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~----~~~~~~d~lViAtG~~p~~p~~~~~~~~ 254 (556)
|.+.++..++..++++...+...+++.+|+++.|++.+.+++.|.+.. ...+.++++|||||+.-...|+...+++
T Consensus 117 dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDek 196 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEK 196 (506)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCc
Confidence 999999999999999999999999999999999999999999988743 2679999999999996333347788999
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
.+.+++.++.|.+.|++++|||+|++|+|++..|.++|.+||+++..+++.+.+|.|+++..++.|.+ +|+++++++++
T Consensus 197 kIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~k-QgikF~l~tkv 275 (506)
T KOG1335|consen 197 KIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQK-QGIKFKLGTKV 275 (506)
T ss_pred eEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHh-cCceeEeccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCE
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
..++.+.+| .+.+++.+..+++ ..+++||++++++|++|.+..|++++.|++. ++|.|.||..++ |.+|||
T Consensus 276 ~~a~~~~dg-~v~i~ve~ak~~k-~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~------t~vP~i 347 (506)
T KOG1335|consen 276 TSATRNGDG-PVEIEVENAKTGK-KETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQ------TKVPHI 347 (506)
T ss_pred EEeeccCCC-ceEEEEEecCCCc-eeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccc------ccCCce
Confidence 999988776 6788887765444 4789999999999999999999999999987 889999999999 799999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecccc
Q 008714 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 493 (556)
Q Consensus 414 ya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~ 493 (556)
|++||++.+|||+|.|..||..+.+.|.|.....+|..+|.++|++||+++||+||+|+++ +|++|.+++++|..|
T Consensus 348 ~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlke----egi~y~vgkfpF~aN 423 (506)
T KOG1335|consen 348 YAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKE----EGIKYKVGKFPFSAN 423 (506)
T ss_pred EEecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhhHHh----cCcceEeeecccccc
Confidence 9999999999999999999999999999998778888899999999999999999999987 499999999999999
Q ss_pred chhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhcc
Q 008714 494 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMTF 542 (556)
Q Consensus 494 ~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~~ 542 (556)
.|+....+++||+|+++|+ .+++|||.|++|+.|+|+|++. .|++-|
T Consensus 424 sRaktn~d~eg~vKvl~d~-~tdkiLGvHiigp~AgEli~EA-~lAiey 470 (506)
T KOG1335|consen 424 SRAKTNNDTEGFVKVLADK-ETDKILGVHIIGPNAGELIHEA-SLAIEY 470 (506)
T ss_pred chhhccCCccceeEEEecC-CCCcEEEEEEecCCHHHHHHHH-HHHHHh
Confidence 9999999999999999999 7999999999999999999987 444443
No 3
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-68 Score=574.96 Aligned_cols=436 Identities=39% Similarity=0.629 Sum_probs=372.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccc----
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV---- 173 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~---- 173 (556)
.+|||+|||+||+|+.||..++++|++|+|||++ .+||+|+++||+|||.|++.+..++.++...++..+|+..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 3799999999999999999999999999999974 7999999999999999999999988876544445677641
Q ss_pred --------------cccccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-------cEEEeceEEEecCCEEEEc-cceEEE
Q 008714 174 --------------HAAGYDRQGVADHANNLATKIRNNLTNSMKALG-------VDILTGVGTILGPQKVKFG-TDNIVT 231 (556)
Q Consensus 174 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------v~~~~g~~~~~~~~~v~~~-~~~~~~ 231 (556)
....+|++.+..+.+..++.+...+...++..+ |+++.|.+.+.+.++|.+. +++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i~ 274 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFK 274 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEEE
Confidence 234679999999999999999888888888775 8999999999999988774 457899
Q ss_pred eCeEEEeCCCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHH
Q 008714 232 AKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPE 311 (556)
Q Consensus 232 ~d~lViAtG~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~ 311 (556)
||+||||||++|.+|++.+.++..++++++++.++..|++++|||+|++|+|+|..|.++|.+||++++.+++++.+|++
T Consensus 275 ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~e 354 (659)
T PTZ00153 275 VKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDAD 354 (659)
T ss_pred CCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHH
Confidence 99999999999999987777777899999998888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCC---C------CCceEecCEEEEeeCCCCCCCCCCC
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK---E------PKDTLEVDAALIATGRAPFTNGLGL 382 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~---~------~~~~i~~D~vi~a~G~~p~~~~l~l 382 (556)
+.+.+.+.+.++.||++++++.+++|+..+++..+.+.+.+.... + +.+++++|.|++|+|++||++.+++
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l 434 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGL 434 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCc
Confidence 999998876333899999999999998754444456655432100 0 1137999999999999999999888
Q ss_pred cccccccCCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC-------------CccCCC
Q 008714 383 ENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGR-------------DHVLNH 449 (556)
Q Consensus 383 ~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~-------------~~~~~~ 449 (556)
+..++..++|+|.||++||+.+.+.+++|||||+|||++.+++++.|.+||+++++||++. ...++|
T Consensus 435 ~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~ 514 (659)
T PTZ00153 435 DKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIY 514 (659)
T ss_pred hhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCcccccccccccccccccc
Confidence 8888877779999999999632222347999999999999999999999999999999986 455778
Q ss_pred CCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhhhcCC----------------------cceEEE
Q 008714 450 LSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENE----------------------GEGLAK 507 (556)
Q Consensus 450 ~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----------------------~~g~~k 507 (556)
..+|+++|++|++++||+||+||++++. ..++.+...+|..+.|++++++ ++||+|
T Consensus 515 ~~iP~~ift~PeiA~VGlTE~eA~~~g~--~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vK 592 (659)
T PTZ00153 515 KNIPSVCYTTPELAFIGLTEKEAKELYP--PDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVK 592 (659)
T ss_pred CcCCEEEECcCceEEeeCCHHHHHhcCC--CcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEE
Confidence 8999999999999999999999997521 1356677888999999987665 789999
Q ss_pred EEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 508 GVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 508 li~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
|++++ .+++|||+|++|+.+.++|+.++.+
T Consensus 593 li~d~-~t~rILGa~ivG~~A~elI~~~a~a 622 (659)
T PTZ00153 593 IVYLK-DTKEILGMFIVGSYASILIHEGVLA 622 (659)
T ss_pred EEEEC-CCCeEEEEEEECCCHHHHHHHHHHH
Confidence 99998 6899999999999999998776544
No 4
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-67 Score=555.47 Aligned_cols=421 Identities=29% Similarity=0.499 Sum_probs=371.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
+.+|||+||||||||+.||..|+++|++|+|||+ +.+||+|++.||+|+|.+++.+..++..+ +...+|+......
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~---~~~~~g~~~~~~~ 78 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAK---ALAEHGIVFGEPK 78 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHh---hhhhcCcccCCCC
Confidence 3469999999999999999999999999999999 58999999999999999999888776653 4566787766677
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVPKGIEVDG 253 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~~p~~~~~~~ 253 (556)
+++..+..+.+...+++...+...++..||+++.+.+.+.+.+++.+. ++ .++.||+||||||++|+.+|..+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~ 158 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDD 158 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCC
Confidence 899999999998888888778888899999999999999998887663 34 47999999999999998655444455
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..++++++...+...|++++|||+|++|+|+|..|.++|.+||++++.++++|.+|+++.+.+++.|++ . |++++++.
T Consensus 159 ~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~-~-v~i~~~~~ 236 (471)
T PRK06467 159 PRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKK-Q-FNIMLETK 236 (471)
T ss_pred CcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhh-c-eEEEcCCE
Confidence 568888888888888999999999999999999999999999999999999999999999999999987 6 99999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPH 412 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~ 412 (556)
+++++..++ .+.+++.++. ++.+++++|.|++++|++||++.+.++..+++. ++|+|.||+++| |++||
T Consensus 237 v~~i~~~~~--~~~v~~~~~~--~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~------t~~p~ 306 (471)
T PRK06467 237 VTAVEAKED--GIYVTMEGKK--APAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCR------TNVPH 306 (471)
T ss_pred EEEEEEcCC--EEEEEEEeCC--CcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcc------cCCCC
Confidence 999986433 3556665431 123579999999999999999987778888876 789999999999 79999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccc
Q 008714 413 LYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKA 492 (556)
Q Consensus 413 Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~ 492 (556)
|||+|||++.+++++.|.+||++||+||++.+..+++..+|+++|++|++++||+||+||++. |+++.+..++|..
T Consensus 307 VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~----g~~~~~~~~~~~~ 382 (471)
T PRK06467 307 IFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEE----GIEYETATFPWAA 382 (471)
T ss_pred EEEehhhcCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHHHHhc----CCCeEEEEEecCc
Confidence 999999999999999999999999999999877788889999999999999999999999874 9999999999999
Q ss_pred cchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 493 NTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 493 ~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+.++...+.++||+||++|+ .+++|||+|++|+++.++|+.++.+-
T Consensus 383 ~~~~~~~~~~~g~~kli~d~-~t~~ilG~~~vg~~a~e~i~~~a~ai 428 (471)
T PRK06467 383 SGRAIASDCADGMTKLIFDK-ETHRVLGGAIVGTNAGELLGEIGLAI 428 (471)
T ss_pred chhhhhCCCCceEEEEEEEC-CCCeEEEEEEECCCHHHHHHHHHHHH
Confidence 99999888899999999998 68999999999999999998886553
No 5
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4.7e-67 Score=550.92 Aligned_cols=412 Identities=28% Similarity=0.464 Sum_probs=364.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+|||+||||||+|..||.. ..|.+|+|||++.+||+|+|+||+|||.|++.+...+..+ +...+|+......+++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIR---EAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHH---HHHhCCccCCCCcCCH
Confidence 3899999999999998876 4699999999999999999999999999999988877664 3456777654456899
Q ss_pred HHHHHHHHHHHHHHHHH-HHHH-HHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEec
Q 008714 181 QGVADHANNLATKIRNN-LTNS-MKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVIT 258 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~-~~~~-~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t 258 (556)
..+..+++...+++... .... ++..||+++.|.+.+.+.++|.+.++++++||+||||||++|+.|++++.++..+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~ 155 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHT 155 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEc
Confidence 99999998888887553 4444 777899999999999999999998777899999999999999999877766666788
Q ss_pred ccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 259 SDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 259 ~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++..+...|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+.+.+ + .+|++++++.+++++
T Consensus 156 ~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~-~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 156 SDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-S-KRWDVRLGRNVVGVS 233 (451)
T ss_pred hHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-h-cCeEEEeCCEEEEEE
Confidence 88888888889999999999999999999999999999999999999999999998888766 3 579999999999998
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEec
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIG 417 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~G 417 (556)
..++ .+.+++.++ .++++|.|++|+|++||++.++++..+++. ++|+|.||+++| |++|||||+|
T Consensus 234 ~~~~--~v~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~------Ts~p~IyA~G 299 (451)
T PRK07846 234 QDGS--GVTLRLDDG------STVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQR------TSAEGVFALG 299 (451)
T ss_pred EcCC--EEEEEECCC------cEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcc------cCCCCEEEEe
Confidence 6432 355666555 579999999999999999988878888887 789999999999 7999999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHhCCC--ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccch
Q 008714 418 DANGKMMLAHAASAQGISVVEQVTGRD--HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 495 (556)
Q Consensus 418 D~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 495 (556)
||++.+++++.|.+||+++++||++.. ...++..+|.++|++|++++||+||+||++. |+++.+...+|..+.+
T Consensus 300 D~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~~~ 375 (451)
T PRK07846 300 DVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAA----GLDITVKVQNYGDVAY 375 (451)
T ss_pred ecCCCccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhc----CCCEEEEEEecCcchh
Confidence 999999999999999999999999763 3467888999999999999999999999874 9999999999999999
Q ss_pred hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 496 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 496 a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+++.++++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 376 ~~~~~~~~g~~Kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~a 417 (451)
T PRK07846 376 GWAMEDTTGFVKLIADR-DTGRLLGAHIIGPQASTLIQPLIQA 417 (451)
T ss_pred hhhCCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 99888889999999998 6899999999999999999887655
No 6
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.6e-66 Score=553.87 Aligned_cols=416 Identities=31% Similarity=0.494 Sum_probs=365.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC----------CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhh
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG----------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA 168 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk----------~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~ 168 (556)
..+|||+|||+||||+.||..|+++|++|+|||+ +.+||+|+|+||+|+|.|++.+...+.++ +...
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~---~~~~ 153 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFE---ESRG 153 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHH---hhhh
Confidence 4579999999999999999999999999999996 56999999999999999999988877664 3466
Q ss_pred cCcccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCC
Q 008714 169 LGLQVH-AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 169 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~ 247 (556)
+|+... ...+|+..+..+++....++..++...+++.||+++.|.+.+++.++|.++ ++++.||+||||||++|..|+
T Consensus 154 ~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~-G~~~~~D~LVIATGs~p~~P~ 232 (558)
T PLN02546 154 FGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVD-GKLYTARNILIAVGGRPFIPD 232 (558)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEEC-CEEEECCEEEEeCCCCCCCCC
Confidence 787643 456899999999999999999999999999999999999999999988874 578999999999999999887
Q ss_pred CCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceE
Q 008714 248 GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 248 ~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~ 327 (556)
+++.+ .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+++.|++ .||+
T Consensus 233 IpG~~--~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~-~GV~ 309 (558)
T PLN02546 233 IPGIE--HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSL-RGIE 309 (558)
T ss_pred CCChh--hccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHH-CCcE
Confidence 66543 36788888877778999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDAN 406 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~ 406 (556)
+++++.+.+++..+++ .+.+.+.++ ..+.+|.|++++|++||++.+.++..+++. ++|+|.||+++|
T Consensus 310 i~~~~~v~~i~~~~~g-~v~v~~~~g------~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~----- 377 (558)
T PLN02546 310 FHTEESPQAIIKSADG-SLSLKTNKG------TVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR----- 377 (558)
T ss_pred EEeCCEEEEEEEcCCC-EEEEEECCe------EEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCce-----
Confidence 9999999999864333 234443332 345589999999999999987778888876 679999999999
Q ss_pred CCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEE
Q 008714 407 GNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSV 485 (556)
Q Consensus 407 ~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~ 485 (556)
|++|||||+|||++.+++++.|..||+++|+||++.+. ..++..+|+++|++|++++||+||+||+++ |+++.+
T Consensus 378 -Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~----g~~~~~ 452 (558)
T PLN02546 378 -TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEE----YGDVDV 452 (558)
T ss_pred -eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHc----CCCeEE
Confidence 79999999999999999999999999999999998653 356788999999999999999999999875 778888
Q ss_pred EEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 486 AKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
.+.+|..+.+++..+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+.
T Consensus 453 ~~~~~~~~~~~~~~~~~~g~~Klv~d~-~t~~ILGa~ivG~~a~elI~~~a~ai 505 (558)
T PLN02546 453 FTANFRPLKATLSGLPDRVFMKLIVCA-KTNKVLGVHMCGEDAPEIIQGFAVAV 505 (558)
T ss_pred EEEecccchhhhhCCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 899999888887777778999999998 68999999999999999999887653
No 7
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=2.2e-66 Score=546.16 Aligned_cols=417 Identities=28% Similarity=0.443 Sum_probs=366.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccc-ccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH-AAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 179 (556)
+|||+||||||||++||..|+++|++|+|||++.+||+|++.||+|+|.+++.+...+..+ +...+|++.. ...++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMH---DAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHh---HHhhcCcccCCcCccC
Confidence 5899999999999999999999999999999988999999999999999999888777664 4566777643 23578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCC-CCCCCCCCeEec
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVP-KGIEVDGKTVIT 258 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p-~~~~~~~~~v~t 258 (556)
+..+..+.+.+++.+...+...+++.||+++.+++.+.+.++|.++ +.++.||+||||||++|+.| ++++.+ ..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~-~~~~~~d~vIiAtGs~p~~p~~i~g~~--~~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVN-GRDYTAPHILIATGGKPSFPENIPGAE--LGTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEC-CEEEEeCEEEEecCCCCCCCCCCCCCc--eeEc
Confidence 9999999999999888888888999999999999988888888774 46799999999999999888 555432 2367
Q ss_pred ccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 259 SDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 259 ~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
+++.+.+...|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+++.|++ .||++++++.+++++
T Consensus 156 ~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~-~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 156 SDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEK-EGINVHKLSKPVKVE 234 (450)
T ss_pred HHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHH-cCCEEEcCCEEEEEE
Confidence 7777788788999999999999999999999999999999999999999999999999999987 899999999999998
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEec
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIG 417 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~G 417 (556)
.++++ .+.+++.++ ..++++|.|++++|++||++.+.++..+++. ++|+|.||+++| |++|||||+|
T Consensus 235 ~~~~~-~~~v~~~~g-----~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~------T~~p~IyAiG 302 (450)
T TIGR01421 235 KTVEG-KLVIHFEDG-----KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQN------TNVPGIYALG 302 (450)
T ss_pred EeCCc-eEEEEECCC-----cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCc------CCCCCEEEEE
Confidence 65332 345666554 1469999999999999999988788888876 789999999999 7899999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHhCCC--ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCce-EEEEEEeccccc
Q 008714 418 DANGKMMLAHAASAQGISVVEQVTGRD--HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFE-VSVAKTSFKANT 494 (556)
Q Consensus 418 D~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~-~~~~~~~~~~~~ 494 (556)
||++.+++++.|.+||+++|+||++.. .+.++..+|+++|++|++++||+||+||++++ |++ +.+...+|..+.
T Consensus 303 D~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~---g~~~~~~~~~~~~~~~ 379 (450)
T TIGR01421 303 DVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKY---GKENIKVYNSSFTPMY 379 (450)
T ss_pred ecCCCcccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhc---CCCCEEEEEEEcChhH
Confidence 999999999999999999999999643 35678899999999999999999999998652 553 788888999999
Q ss_pred hhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhh
Q 008714 495 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 540 (556)
Q Consensus 495 ~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~ 540 (556)
++...+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-.
T Consensus 380 ~~~~~~~~~g~~klv~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai~ 424 (450)
T TIGR01421 380 YAMTSEKQKCRMKLVCAG-KEEKVVGLHGIGDGVDEMLQGFAVAIK 424 (450)
T ss_pred HHHhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 999889999999999998 689999999999999999999876643
No 8
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.2e-66 Score=545.68 Aligned_cols=418 Identities=32% Similarity=0.498 Sum_probs=368.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+|||+||||||||++||+.++++|++|+|||++.+||+|++.||+|+|.|++.+...+.++ +...+|+......+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFE---DAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHh---hhHhcCcCCCCCCcCH
Confidence 5999999999999999999999999999999999999999999999999999988776653 4566777655567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE-ccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEecc
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF-GTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~-~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~ 259 (556)
..+..+++....++...+...+++.||+++.+.+.+++.+++.+ .++.++.||+||||||++|..|+.++.+ ..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~--~~~~~ 156 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHE--LGITS 156 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCcc--ceech
Confidence 99999999988888888888999999999999998888777765 3457899999999999999888766543 24566
Q ss_pred cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
++.+.+...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++.+++++.+.+++.+++ .||++++++.+.+++.
T Consensus 157 ~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~gV~i~~~~~v~~i~~ 235 (446)
T TIGR01424 157 NEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEG-RGIRIHPQTSLTSITK 235 (446)
T ss_pred HHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHH-CCCEEEeCCEEEEEEE
Confidence 777777778999999999999999999999999999999999999999999999999999987 8999999999999986
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecc
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 418 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD 418 (556)
.+++ +.+++.++ +++++|.|++|+|++||++.++++..+++. ++|+|.||+++| |++|||||+||
T Consensus 236 ~~~~--~~v~~~~g------~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~------Ts~~~IyA~GD 301 (446)
T TIGR01424 236 TDDG--LKVTLSHG------EEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSR------TSIPSIYAVGD 301 (446)
T ss_pred cCCe--EEEEEcCC------cEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCc------cCCCCEEEeec
Confidence 4333 45666554 579999999999999999987778888876 679999999999 78999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhh
Q 008714 419 ANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKAL 497 (556)
Q Consensus 419 ~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 497 (556)
|++.+++++.|.+||+++++||++.+ .++++..+|+++|+.|++++||+||+||++.+ ++++.+.+.+|..+.+++
T Consensus 302 ~~~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~---~~~~~~~~~~~~~~~~~~ 378 (446)
T TIGR01424 302 VTDRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKF---TGDILVYRAGFRPMKNTF 378 (446)
T ss_pred cCCCccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhc---CCCEEEEEEecCchHhHh
Confidence 99999999999999999999999854 56788899999999999999999999998741 488898999998899998
Q ss_pred hcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhcc
Q 008714 498 AENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMTF 542 (556)
Q Consensus 498 ~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~~ 542 (556)
+.+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-..-
T Consensus 379 ~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 422 (446)
T TIGR01424 379 SGRQEKTLMKLVVDE-KDDKVLGAHMVGPDAAEIIQGIAIALKMG 422 (446)
T ss_pred hcCCCceEEEEEEeC-CCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 888889999999998 68999999999999999999987664443
No 9
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.8e-66 Score=548.44 Aligned_cols=421 Identities=29% Similarity=0.489 Sum_probs=370.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccc-ccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH-AAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 177 (556)
..+|||+||||||||++||..|+++|++|+|||+..+||+|++.||+|+|.|++.+...+..+ +...+|++.. ...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~ 79 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLAR---RAAEYGVSVGGPVS 79 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHH---HHHhcCcccCccCc
Confidence 346999999999999999999999999999999999999999999999999999888776654 3455677643 246
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v 256 (556)
+++..+..+.+....++...+...+++. ||+++.+++.+.+.++|.++ +.++.||+||||||++|+.|++++.+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~-~~~~~~d~lViATGs~p~~p~i~G~~~~~~ 158 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVG-GETLRAKRIFINTGARAAIPPIPGLDEVGY 158 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEEC-cEEEEeCEEEEcCCCCCCCCCCCCCCcCce
Confidence 7899999998888888777788888887 99999999998888988885 467999999999999999998888777778
Q ss_pred ecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 257 ~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
+++++.+.+...|++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++ .||++++++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~GV~i~~~~~V~~ 237 (463)
T PRK06370 159 LTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILER-EGIDVRLNAECIR 237 (463)
T ss_pred EcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHh-CCCEEEeCCEEEE
Confidence 888888877788999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEE
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYC 415 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya 415 (556)
++..+++ ..+.+... +...++++|.||+|+|++||++.+.++..++.. ++|+|.||+++| |+.|||||
T Consensus 238 i~~~~~~--~~v~~~~~---~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~------t~~~~IyA 306 (463)
T PRK06370 238 VERDGDG--IAVGLDCN---GGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLR------TTNPGIYA 306 (463)
T ss_pred EEEcCCE--EEEEEEeC---CCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCc------CCCCCEEE
Confidence 9875333 33433211 112579999999999999999877677778776 689999999999 78999999
Q ss_pred ecccCCCCCcHHHHHHHHHHHHHHHhCC-CccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccc
Q 008714 416 IGDANGKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANT 494 (556)
Q Consensus 416 ~GD~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~ 494 (556)
+|||++.+++++.|..||++||+||++. +..+++..+|.++|++|++++||+||+||+++ |+++.+.+++|..+.
T Consensus 307 iGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~----g~~~~~~~~~~~~~~ 382 (463)
T PRK06370 307 AGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKS----GRRVLVGTRPMTRVG 382 (463)
T ss_pred eeecCCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHc----CCCeEEEEEecCcch
Confidence 9999999999999999999999999976 55677888999999999999999999999864 999999999999999
Q ss_pred hhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhh
Q 008714 495 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 540 (556)
Q Consensus 495 ~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~ 540 (556)
++++.+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-.
T Consensus 383 ~~~~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~ai~ 427 (463)
T PRK06370 383 RAVEKGETQGFMKVVVDA-DTDRILGATILGVHGDEMIHEILDAMY 427 (463)
T ss_pred hHHhcCCCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 999888889999999998 689999999999999999887765543
No 10
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=4.5e-66 Score=545.05 Aligned_cols=417 Identities=28% Similarity=0.442 Sum_probs=358.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHc-CCeEEEecC---------CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG---------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKAL 169 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk---------~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~ 169 (556)
.+|||+||||||+|+.||..++++ |.+|+|||+ +.+||+|+|+||+|||.|++.+...+..+ +...+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~---~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLR---ESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHH---Hhhcc
Confidence 469999999999999999999997 999999997 47999999999999999999988777654 34567
Q ss_pred Ccccc--ccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEecCCEEEEcc--------ceEEEeCeEEEe
Q 008714 170 GLQVH--AAGYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTILGPQKVKFGT--------DNIVTAKDIIIA 238 (556)
Q Consensus 170 g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~~~~~v~~~~--------~~~~~~d~lViA 238 (556)
|+... ...+++..+..+.+..+.++...+...++. .||+++.|.+.+.+.++|.+.. .+++.||+||||
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIA 158 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLA 158 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEe
Confidence 77532 346799999999999999998888888887 4999999999999999988742 247999999999
Q ss_pred CCCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhC---CCeEEEEEeCCCCCCCCCHHHHHH
Q 008714 239 TGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTAL---GSEVTFIEALDQLMPGFDPEIGKL 315 (556)
Q Consensus 239 tG~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~---g~~Vtli~~~~~ll~~~d~~~~~~ 315 (556)
||++|..|++++.+ .++++++.+.+...|++++|||+|++|+|+|..|..+ |.+||++++.+++++.+|+++.+.
T Consensus 159 TGs~p~~p~i~G~~--~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~ 236 (486)
T TIGR01423 159 TGSWPQMLGIPGIE--HCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKE 236 (486)
T ss_pred cCCCCCCCCCCChh--heechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHH
Confidence 99999988766543 3577777777777899999999999999999877665 999999999999999999999999
Q ss_pred HHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCce
Q 008714 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFV 394 (556)
Q Consensus 316 ~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i 394 (556)
+++.|++ .||++++++.+++++..+++ ...+++.++ .++++|.|++++|++||++.++++..+++. ++|+|
T Consensus 237 l~~~L~~-~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g------~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I 308 (486)
T TIGR01423 237 LTKQLRA-NGINIMTNENPAKVTLNADG-SKHVTFESG------KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAI 308 (486)
T ss_pred HHHHHHH-cCCEEEcCCEEEEEEEcCCc-eEEEEEcCC------CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCE
Confidence 9999987 89999999999999865333 345666554 579999999999999999988888888876 78999
Q ss_pred eeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHH
Q 008714 395 PVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAR 473 (556)
Q Consensus 395 ~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~ 473 (556)
.||+++| |++|||||+|||++.+++++.|.+||+++++||++.+ ..+++..+|+++|+.|++++||+||+||+
T Consensus 309 ~Vd~~l~------Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~ 382 (486)
T TIGR01423 309 QVDEFSR------TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAA 382 (486)
T ss_pred ecCCCCc------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHH
Confidence 9999999 7899999999999999999999999999999999865 44677889999999999999999999998
Q ss_pred HhhhhcCceEEEEEEeccccchhhhcCC-cceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhh
Q 008714 474 EKAEKEGFEVSVAKTSFKANTKALAENE-GEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 540 (556)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~ 540 (556)
+. +.++.+...++..+.++..... .+||+||++|+ .+++|||+|++|+.+.++|+.++.+-.
T Consensus 383 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~-~~~~iLGa~ivg~~a~elI~~~~~ai~ 445 (486)
T TIGR01423 383 KK----FEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNH-ADGTVLGVHLLGDSSPEIIQAVGICLK 445 (486)
T ss_pred hc----CCceEEEEEeeCchhhhhccCccCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 74 5567777777777666554222 36999999998 689999999999999999998876643
No 11
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-65 Score=542.93 Aligned_cols=420 Identities=35% Similarity=0.566 Sum_probs=363.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
+|||+||||||||++||..|+++|++|+|||+ +.+||+|++.||+|+|.++..+..++.... .....+|+.. ...++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~-~~~~~~gi~~-~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASG-GEFAHLGIEV-KPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhh-hhhhhcCccc-cCccC
Confidence 48999999999999999999999999999998 899999999999999999998877654432 1234567654 34678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
+..+..+.+..+.++...+...++..+|+++.|.+.+.+.+++.+ .++ .+++||+||||||++|..+++...++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~ 160 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQR 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCe
Confidence 999888888888888777788888889999999998888777665 344 3699999999999998755555566767
Q ss_pred EecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 256 VITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 256 v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
++++++++.+...|++++|||+|++|+|+|..|.++|.+||++++.+++++.+|+++.+.+++.|++ .||++++++.++
T Consensus 161 ~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~-~gV~i~~~~~V~ 239 (466)
T PRK06115 161 IIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTK-QGMKFKLGSKVT 239 (466)
T ss_pred EECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHh-cCCEEEECcEEE
Confidence 8888888887778999999999999999999999999999999999999999999999999999987 899999999999
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEE
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLY 414 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vy 414 (556)
+++.++++ +.+.+.+.. .++.+++++|.|++++|++||++.++++..++.. ++| +.||+++| |++||||
T Consensus 240 ~i~~~~~~--v~v~~~~~~-~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~------Ts~~~Iy 309 (466)
T PRK06115 240 GATAGADG--VSLTLEPAA-GGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHR------TSVPGVW 309 (466)
T ss_pred EEEEcCCe--EEEEEEEcC-CCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCee------cCCCCEE
Confidence 99865333 444443211 1123579999999999999999988778888776 456 77999999 7999999
Q ss_pred EecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccc
Q 008714 415 CIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANT 494 (556)
Q Consensus 415 a~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~ 494 (556)
|+|||++.+++++.|.+||+++++||++.+..+++..+|.++|++|++++||+||+||++. |+++.+.+++|..+.
T Consensus 310 A~GD~~~~~~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~~ 385 (466)
T PRK06115 310 VIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAE----GRAYKVGKFPFTANS 385 (466)
T ss_pred EeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHC----CCCEEEEEEecccCh
Confidence 9999999999999999999999999998876678889999999999999999999999874 899999999999999
Q ss_pred hhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 495 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 495 ~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
|+.++++++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 386 ~~~~~~~~~g~~klv~~~-~~~~ilG~~~~g~~a~e~i~~~~~a 428 (466)
T PRK06115 386 RAKINHETEGFAKILADA-RTDEVLGVHMVGPSVSEMIGEFCVA 428 (466)
T ss_pred hhHhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 999988889999999998 6899999999999999999887654
No 12
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=6.4e-66 Score=542.93 Aligned_cols=412 Identities=28% Similarity=0.475 Sum_probs=357.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+|||+|||+||+|+.||.. ..|.+|+|||++.+||+|+|+||+|||.|++.+...+..+ +...+|+......+|+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~---~~~~~g~~~~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIG---ESARLGIDAEIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHH---HhhccCeeCCCCccCH
Confidence 4899999999999998654 4799999999999999999999999999999988877664 3456777644456799
Q ss_pred HHHHHHHHH-HHHHHHHH-HHHHH--HHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeE
Q 008714 181 QGVADHANN-LATKIRNN-LTNSM--KALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (556)
Q Consensus 181 ~~~~~~~~~-~~~~~~~~-~~~~~--~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v 256 (556)
+.+..+... ..+.+... ..... +..||+++.|.+.+.+.++|.+.++.+++||+||||||++|..|++.+..+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~ 156 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRY 156 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEE
Confidence 999988876 55555432 22222 347999999999999999999977778999999999999999887655555567
Q ss_pred ecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 257 ~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
++.++.+.+...|++++|||+|++|+|+|..|.++|.+||++++.+++++.+|+++.+.+.+.++ .+|+++++..+++
T Consensus 157 ~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~--~gI~i~~~~~V~~ 234 (452)
T TIGR03452 157 HTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK--KKWDIRLGRNVTA 234 (452)
T ss_pred EcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHh--cCCEEEeCCEEEE
Confidence 88888888878899999999999999999999999999999999999999999999988887663 5799999999999
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEE
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYC 415 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya 415 (556)
++.++++ +.+++.++ +++++|.|++++|++||++.++++..+++. ++|+|.||+++| |++|||||
T Consensus 235 i~~~~~~--v~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~------Ts~~~IyA 300 (452)
T TIGR03452 235 VEQDGDG--VTLTLDDG------STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGR------TSARGVWA 300 (452)
T ss_pred EEEcCCe--EEEEEcCC------CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcc------cCCCCEEE
Confidence 9864332 55666554 579999999999999999988888888887 789999999999 79999999
Q ss_pred ecccCCCCCcHHHHHHHHHHHHHHHhCCCc--cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecccc
Q 008714 416 IGDANGKMMLAHAASAQGISVVEQVTGRDH--VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 493 (556)
Q Consensus 416 ~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~ 493 (556)
+|||++.+++++.|.+||+++|+||++... ..++..+|+++|++|++++||+||+||++. |+++.+...+|..+
T Consensus 301 ~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~----g~~~~~~~~~~~~~ 376 (452)
T TIGR03452 301 LGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREA----GHDITVKIQNYGDV 376 (452)
T ss_pred eecccCcccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhc----CCCeEEEEecCCch
Confidence 999999999999999999999999998653 567788999999999999999999999874 89999999999999
Q ss_pred chhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 494 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 494 ~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
.+++..++++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 377 ~~~~~~~~~~g~~Klv~d~-~t~~ilG~~~vg~~a~e~i~~~~~a 420 (452)
T TIGR03452 377 AYGWAMEDTTGFCKLIADR-DTGKLLGAHIIGPQASSLIQPLITA 420 (452)
T ss_pred hhHhhcCCCCeEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 9999888889999999998 6899999999999999999887654
No 13
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.9e-65 Score=541.52 Aligned_cols=418 Identities=33% Similarity=0.511 Sum_probs=367.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||+||||||||++||..|+++|++|+|||++.+||+|++.||+|+|.|++.+...+.++. ....+|+....+.++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHD--YAPGYGFDVTENKFD 80 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHh--HHHhcCCCCCCCCcC
Confidence 459999999999999999999999999999999999999999999999999998876665532 123567665556789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEecc
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~ 259 (556)
+..+..+.+...+++...+...+.+.||+++.+.+.+++.++|.+ +++++.||+||||||++|+.|+.++.+ .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~--~~~~~ 157 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAE--YGITS 157 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcc--eeEch
Confidence 999998888888888888888888899999999999999999988 567899999999999999988766542 36777
Q ss_pred cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
++.+.+...+++++|||+|++|+|+|..|.+.|.+||++++++.+++.+++++.+.+.+.+++ .||++++++.+.+++.
T Consensus 158 ~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~-~GV~i~~~~~V~~i~~ 236 (450)
T PRK06116 158 DGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEK-KGIRLHTNAVPKAVEK 236 (450)
T ss_pred hHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHH-CCcEEECCCEEEEEEE
Confidence 777777778999999999999999999999999999999999999999999999999999987 8999999999999987
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecc
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 418 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD 418 (556)
++++ .+.+++.+| +++++|.|++|+|++||++.+.++..++.. ++|+|.||+++| |++|||||+||
T Consensus 237 ~~~g-~~~v~~~~g------~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------Ts~~~IyA~GD 303 (450)
T PRK06116 237 NADG-SLTLTLEDG------ETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQN------TNVPGIYAVGD 303 (450)
T ss_pred cCCc-eEEEEEcCC------cEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCC------cCCCCEEEEee
Confidence 5333 245666665 579999999999999999987778888876 789999999999 79999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhCCCc--cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCce--EEEEEEeccccc
Q 008714 419 ANGKMMLAHAASAQGISVVEQVTGRDH--VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFE--VSVAKTSFKANT 494 (556)
Q Consensus 419 ~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~--~~~~~~~~~~~~ 494 (556)
|++.+++++.|.+||++||+||+|... ..++..+|+++|+.|++++||+||+||++. |++ +.+.+.+|..+.
T Consensus 304 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~----~~~~~~~~~~~~~~~~~ 379 (450)
T PRK06116 304 VTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQ----YGEDNVKVYRSSFTPMY 379 (450)
T ss_pred cCCCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHh----CCCCcEEEEEEecchhH
Confidence 999899999999999999999998543 467889999999999999999999999875 565 888888999999
Q ss_pred hhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhc
Q 008714 495 KALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMT 541 (556)
Q Consensus 495 ~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~ 541 (556)
+++..+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+...
T Consensus 380 ~~~~~~~~~g~~klv~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai~~ 425 (450)
T PRK06116 380 TALTGHRQPCLMKLVVVG-KEEKVVGLHGIGFGADEMIQGFAVAIKM 425 (450)
T ss_pred HHHhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 998888899999999998 6899999999999999999998766443
No 14
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.7e-65 Score=545.58 Aligned_cols=416 Identities=26% Similarity=0.429 Sum_probs=358.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||+|||||+||+.||..+++.|.+|+|||++.+||+|+++||+|+|.|++.+...+..+ +...+|+... ..++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~---~~~~~Gi~~~-~~~d 122 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILE---NSRHYGFDTQ-FSFN 122 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHHH---HHHhcCCCcc-CccC
Confidence 56999999999999999999999999999999999999999999999999999888766553 3455676532 3679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE----------------------------ccceEEE
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF----------------------------GTDNIVT 231 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~----------------------------~~~~~~~ 231 (556)
++.+..+.+..+..+...+.+.+++.||+++.|.+.+.+.++|.+ .++.+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ 202 (561)
T PTZ00058 123 LPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIE 202 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEE
Confidence 999999999998888888888889999999999999998887642 3456899
Q ss_pred eCeEEEeCCCCCCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHH
Q 008714 232 AKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPE 311 (556)
Q Consensus 232 ~d~lViAtG~~p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~ 311 (556)
||+||||||++|..|++++.+ .++++++.+.+.. |++++|||+|++|+|+|..|.++|.+||++++++++++.+|++
T Consensus 203 ad~lVIATGS~P~~P~IpG~~--~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~ 279 (561)
T PTZ00058 203 GKNILIAVGNKPIFPDVKGKE--FTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDET 279 (561)
T ss_pred CCEEEEecCCCCCCCCCCCce--eEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHH
Confidence 999999999999988766543 3677777777665 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCC
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQR 391 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~ 391 (556)
+.+.+++.|++ .||+++++..+.+++..+++ .+.+.+.++ ++++++|.|++++|++||++.++++..++..++
T Consensus 280 i~~~l~~~L~~-~GV~i~~~~~V~~I~~~~~~-~v~v~~~~~-----~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~ 352 (561)
T PTZ00058 280 IINELENDMKK-NNINIITHANVEEIEKVKEK-NLTIYLSDG-----RKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPK 352 (561)
T ss_pred HHHHHHHHHHH-CCCEEEeCCEEEEEEecCCC-cEEEEECCC-----CEEEECCEEEECcCCCCCccccCccccceecCC
Confidence 99999999987 89999999999999865332 244444333 257999999999999999999888777766678
Q ss_pred CceeeCCCCccccCCCCcCCCEEEecccCC----------------------------------CCCcHHHHHHHHHHHH
Q 008714 392 GFVPVDERMRVIDANGNLVPHLYCIGDANG----------------------------------KMMLAHAASAQGISVV 437 (556)
Q Consensus 392 G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~----------------------------------~~~~~~~A~~qg~~aa 437 (556)
|+|.||+++| |++|||||+|||++ .+++++.|..||+++|
T Consensus 353 G~I~VDe~lq------Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa 426 (561)
T PTZ00058 353 GYIKVDDNQR------TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLA 426 (561)
T ss_pred CeEEECcCCc------cCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHH
Confidence 9999999999 79999999999998 6789999999999999
Q ss_pred HHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCc-eEEEEEEeccccchhhhc----CCcceEEEEEEc
Q 008714 438 EQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF-EVSVAKTSFKANTKALAE----NEGEGLAKGVPR 511 (556)
Q Consensus 438 ~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~-~~~~~~~~~~~~~~a~~~----~~~~g~~kli~~ 511 (556)
+||+|.. ...++..+|+++|++|++++||+||+||++++ |+ .+.+...+|..+.++... ..++||+||+++
T Consensus 427 ~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~ 503 (561)
T PTZ00058 427 DRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIY---GKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV 503 (561)
T ss_pred HHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhc---CCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEE
Confidence 9999863 34577889999999999999999999999753 54 577777888888887643 346799999999
Q ss_pred CCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 512 NFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 512 ~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+ .+++|||+|++|+.+.++|+.++.+-
T Consensus 504 ~-~t~~ILG~~ivG~~a~elI~~~a~ai 530 (561)
T PTZ00058 504 G-KEELIKGLHIVGLNADEILQGFAVAL 530 (561)
T ss_pred C-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 8 68999999999999999998886653
No 15
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.1e-65 Score=540.26 Aligned_cols=420 Identities=43% Similarity=0.705 Sum_probs=372.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..|||+||||||||++||..|+++|++|+|||+..+||+|.+.||+|+|.+++.+..++..+ ....+|+......++
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~---~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEAR---HSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHH---HHHhcCcccCCCccC
Confidence 35999999999999999999999999999999977999999999999999998888776654 356677765455678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--c-ceEEEeCeEEEeCCCCCCCCCCCCCCCCeE
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--T-DNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~-~~~~~~d~lViAtG~~p~~p~~~~~~~~~v 256 (556)
+..+..+.+...+.+...+...+++.||+++.+.+.+.+.+.+.+. + +.++.||+||||||++|..|++.+.++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v 159 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVI 159 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence 9999999999888888778888888999999999998888877764 2 367999999999999998887776677778
Q ss_pred ecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 257 ~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
+++++...+...+++++|||+|++|+|+|..|++.|.+||++++.++++|.+++++.+.+++.+++ .||++++++.+++
T Consensus 160 ~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~gV~i~~~~~V~~ 238 (462)
T PRK06416 160 WTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKK-RGIKIKTGAKAKK 238 (462)
T ss_pred EcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 899888888888999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
++.+++ .+.+.+.++ ++.+++++|.||+++|++||++.++++..++..++|+|.||+++| |+.|+|||+
T Consensus 239 i~~~~~--~v~v~~~~g---g~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~------t~~~~VyAi 307 (462)
T PRK06416 239 VEQTDD--GVTVTLEDG---GKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLR------TNVPNIYAI 307 (462)
T ss_pred EEEeCC--EEEEEEEeC---CeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCc------cCCCCEEEe
Confidence 987533 355665543 122579999999999999999988777888776789999999999 789999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchh
Q 008714 417 GDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKA 496 (556)
Q Consensus 417 GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a 496 (556)
|||++.+++++.|..||+++|+||++.+.++++..+|.++|++|++++||+||+||++. |+++.+..++|..+.++
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~----g~~~~~~~~~~~~~~~~ 383 (462)
T PRK06416 308 GDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEE----GFDVKVVKFPFAGNGKA 383 (462)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhc----CCCeEEEEEecCcChHh
Confidence 99999889999999999999999999877788889999999999999999999999874 89999999999999999
Q ss_pred hhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 497 LAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 497 ~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
.+++.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-
T Consensus 384 ~~~~~~~g~~kli~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 425 (462)
T PRK06416 384 LALGETDGFVKLIFDK-KDGEVLGAHMVGARASELIQEAQLAI 425 (462)
T ss_pred HhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 9888889999999998 68999999999999999998886653
No 16
>PLN02507 glutathione reductase
Probab=100.00 E-value=7.7e-65 Score=539.19 Aligned_cols=417 Identities=30% Similarity=0.468 Sum_probs=362.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC----------CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhh
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG----------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA 168 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk----------~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~ 168 (556)
..+|||+||||||+|+.||..|+++|.+|+|||+ +.+||+|++.||+|+|.+++.+...+..+ +...
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~---~~~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFE---DAKN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHH---HHHh
Confidence 4569999999999999999999999999999995 66999999999999999999888776653 3456
Q ss_pred cCcccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccce--EEEeCeEEEeCCCCC
Q 008714 169 LGLQVH-AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTDN--IVTAKDIIIATGSVP 243 (556)
Q Consensus 169 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~~--~~~~d~lViAtG~~p 243 (556)
+|+... ...++++.+..++.....++...+...+...||+++.+.+.+++.+++.+ .+++ ++.||+||||||++|
T Consensus 100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence 777642 34689999998888888888888888889999999999999988876655 3444 588999999999999
Q ss_pred CCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCC
Q 008714 244 FVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINP 323 (556)
Q Consensus 244 ~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~ 323 (556)
..|+.++.+ ..+++++.+.++..+++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+++.|++
T Consensus 180 ~~p~ipG~~--~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~- 256 (499)
T PLN02507 180 QRPNIPGKE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEG- 256 (499)
T ss_pred CCCCCCCcc--ceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHh-
Confidence 888766543 24677777777778999999999999999999999999999999999999999999999999999987
Q ss_pred CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCcc
Q 008714 324 RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRV 402 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~ 402 (556)
.||++++++.+++++..+++ +.+++.++ .++++|.|++++|++||++.+.++..+++. ++|+|.||+++|
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~--~~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~- 327 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGG--IKVITDHG------EEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR- 327 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCe--EEEEECCC------cEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc-
Confidence 89999999999999864332 45665554 579999999999999999988778888876 679999999999
Q ss_pred ccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCc
Q 008714 403 IDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF 481 (556)
Q Consensus 403 ~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~ 481 (556)
|++|||||+|||++.+++++.|.+||+++++||++... ..++..+|+++|+.|++++||+||+||++.+ ++
T Consensus 328 -----Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~---~~ 399 (499)
T PLN02507 328 -----TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQA---KG 399 (499)
T ss_pred -----CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhcc---CC
Confidence 79999999999999999999999999999999997543 4567789999999999999999999998752 67
Q ss_pred eEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 482 EVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 482 ~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
++.+...+|..+.+++..+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~-~t~~ilG~~~vg~~a~e~i~~~~~ai 456 (499)
T PLN02507 400 DILVFTSSFNPMKNTISGRQEKTVMKLIVDA-ETDKVLGASMCGPDAPEIMQGIAVAL 456 (499)
T ss_pred CEEEEEeecCccccccccCCCCEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 7888888899888888777778999999998 68999999999999999999887663
No 17
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.1e-64 Score=537.60 Aligned_cols=416 Identities=31% Similarity=0.502 Sum_probs=364.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
|||+||||||||++||..|+++|++|+|||++.+||+|++.||+|+|.|++.+...+.... ..+|+......+++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~----~~~g~~~~~~~~~~~ 76 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARK----PPFGGLAATVAVDFG 76 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhc----cCcccccCCCccCHH
Confidence 6999999999999999999999999999999889999999999999999988877665542 235665445567899
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHcCcEEEeceEEEecCCEEEEccc-eEEEeCeEEEeCCCCCCCCCCCCCCCCeEecc
Q 008714 182 GVADHANNLATKIRN-NLTNSMKALGVDILTGVGTILGPQKVKFGTD-NIVTAKDIIIATGSVPFVPKGIEVDGKTVITS 259 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~-~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~ 259 (556)
.+..+.+.....+.. .+...+++.+|+++.+.+.+.+.++|.+.++ ..+.||+||||||++|..|++++.+...++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~ 156 (463)
T TIGR02053 77 ELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTS 156 (463)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECc
Confidence 988888888777754 3667788889999999999999999988764 46899999999999999988777666668888
Q ss_pred cccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 260 DHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 260 ~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
++++.+...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+++.+++ .||++++++.+++++.
T Consensus 157 ~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~gV~i~~~~~V~~i~~ 235 (463)
T TIGR02053 157 EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAE-EGIEVVTSAQVKAVSV 235 (463)
T ss_pred hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHH-cCCEEEcCcEEEEEEE
Confidence 888887778899999999999999999999999999999999999999999999999999987 8999999999999987
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecc
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGD 418 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD 418 (556)
+++ ...+++.+. +...++++|.|++|+|++||++.++++..+++. ++|+|.||++|| |+.|||||+||
T Consensus 236 ~~~--~~~v~~~~~---~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------Ts~~~VyAiGD 304 (463)
T TIGR02053 236 RGG--GKIITVEKP---GGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLR------TSNPGIYAAGD 304 (463)
T ss_pred cCC--EEEEEEEeC---CCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCcc------CCCCCEEEeee
Confidence 432 234444321 112579999999999999999977778888876 789999999999 78999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhCC-CccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhh
Q 008714 419 ANGKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKAL 497 (556)
Q Consensus 419 ~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 497 (556)
|++.+++++.|..||++||+||++. +..+++..+|.++|++|++++||+||+||++. |+++.+...+|..+.++.
T Consensus 305 ~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~~~~~~ 380 (463)
T TIGR02053 305 VTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKA----GIECDCRTLPLTNVPRAR 380 (463)
T ss_pred cCCCcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhc----CCCeEEEEEecccchHHH
Confidence 9999999999999999999999986 66678888999999999999999999999874 899999999999999999
Q ss_pred hcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 498 AENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 498 ~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+++.++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 381 ~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~a 420 (463)
T TIGR02053 381 INRDTRGFIKLVAEP-GTGKVLGVQVVAPEAAEVINEAALA 420 (463)
T ss_pred hcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 888889999999998 6899999999999999998887554
No 18
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.3e-64 Score=535.73 Aligned_cols=420 Identities=36% Similarity=0.620 Sum_probs=365.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..|||+||||||||++||..|+++|++|+|||++.+||+|++.||+|+|.++..+..++..+ +...+|+....+.++
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAK---KASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHH---HHHhcCccCCCCccC
Confidence 46999999999999999999999999999999999999999999999999998887776653 345667765555678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCC-------EEEE--ccc--eEEEeCeEEEeCCCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQ-------KVKF--GTD--NIVTAKDIIIATGSVPFVPKG 248 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~-------~v~~--~~~--~~~~~d~lViAtG~~p~~p~~ 248 (556)
+..+..+.+..++.+.......+++.||+++.|.+.+++.+ ++.+ .++ .++.||+||||||++|..+|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~ 159 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPG 159 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCC
Confidence 99999999888888877777888889999999999988876 5554 344 579999999999999987776
Q ss_pred CCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEE
Q 008714 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 249 ~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~ 328 (556)
.+.++..++++++.+.+...|++++|||+|++|+|+|..|+++|.+||++++.++++|.+++++.+.+.+.+++ .||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~-~gI~i 238 (472)
T PRK05976 160 LPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKK-LGVRV 238 (472)
T ss_pred CCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHh-cCCEE
Confidence 66667678888888888888999999999999999999999999999999999999999999999999999987 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t 408 (556)
++++.+++++...++....+.+.+| +..++++|.|++++|++||++.++++..++..++|+|.||+++| |
T Consensus 239 ~~~~~v~~i~~~~~~~~~~~~~~~g----~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~------t 308 (472)
T PRK05976 239 VTGAKVLGLTLKKDGGVLIVAEHNG----EEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQ------T 308 (472)
T ss_pred EeCcEEEEEEEecCCCEEEEEEeCC----ceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcc------c
Confidence 9999999997521223233334444 22479999999999999999877767777666779999999999 6
Q ss_pred cCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEE
Q 008714 409 LVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAK 487 (556)
Q Consensus 409 ~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~ 487 (556)
+.|+|||+|||++.+++++.|..||+++++||+|.+ ..+++..+|.++|++|++++||+||+||+++ |+++.+..
T Consensus 309 s~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~----g~~~~~~~ 384 (472)
T PRK05976 309 KERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEA----GYDVKVGK 384 (472)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHc----CCCEEEEE
Confidence 889999999999989999999999999999999876 5677888999999999999999999999875 99999999
Q ss_pred EeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 488 TSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 488 ~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
++|..+.|+.+++.++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 385 ~~~~~~~~~~~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~a 434 (472)
T PRK05976 385 FPFAANGKALTYGESDGFVKVVADR-DTHDILGVQAVGPHVTELISEFALA 434 (472)
T ss_pred EECCcchhhhhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 9999999999888899999999998 6899999999999999998876554
No 19
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.4e-64 Score=537.11 Aligned_cols=416 Identities=29% Similarity=0.445 Sum_probs=364.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.+|||+||||||+|++||..|++.|++|+|||+ +.+||+|.+.||+|+|.+......+........+..++. ...+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~---~~~~ 80 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRV---KLRI 80 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCC---cCcc
Confidence 459999999999999999999999999999999 689999999999999999877766554433222222221 2346
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDGK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~~~~~~~ 254 (556)
++..+..+.+...+.+...+.+.+++.+|+++.+.+.+.+.+++.+ .++ .++.||+||||||+.|..|+.+++++.
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~ 160 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHP 160 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCC
Confidence 7888888888888888778888888999999999998888776655 334 379999999999999999988888788
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
.++++++++.+...|++++|||+|++|+|+|..|++.|.+||++++.+++++.+|+++.+.+.+.+++ .||++++++.+
T Consensus 161 ~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~gI~v~~~~~v 239 (461)
T PRK05249 161 RIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRD-SGVTIRHNEEV 239 (461)
T ss_pred eEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHH-cCCEEEECCEE
Confidence 89999988888888999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCE
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
++++..++ .+.+++.++ .++++|.|++|+|++||++.+.++..++.. ++|+|.||+++| |+.|||
T Consensus 240 ~~i~~~~~--~~~v~~~~g------~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~------t~~~~I 305 (461)
T PRK05249 240 EKVEGGDD--GVIVHLKSG------KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQ------TAVPHI 305 (461)
T ss_pred EEEEEeCC--eEEEEECCC------CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcc------cCCCCE
Confidence 99986433 355666555 579999999999999999987778888876 789999999999 789999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecccc
Q 008714 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKAN 493 (556)
Q Consensus 414 ya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~ 493 (556)
||+|||++.+++++.|..||++||+||+|.+...++..+|.++|+.|++++||+||+||++. |+++.+.+.+|..+
T Consensus 306 yAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~----g~~~~~~~~~~~~~ 381 (461)
T PRK05249 306 YAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAA----KVPYEVGRARFKEL 381 (461)
T ss_pred EEeeecCCCcccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHc----CCCeEEEEEccccc
Confidence 99999999999999999999999999998776678889999999999999999999999874 89999999999999
Q ss_pred chhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 494 TKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 494 ~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
.|+.+.+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 382 ~~~~~~~~~~g~~klv~~~-~~~~ilG~~~~g~~a~e~i~~~~~a 425 (461)
T PRK05249 382 ARAQIAGDNVGMLKILFHR-ETLEILGVHCFGERATEIIHIGQAI 425 (461)
T ss_pred cceeecCCCCcEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 9999888889999999998 6899999999999999998776544
No 20
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=2.2e-64 Score=533.80 Aligned_cols=414 Identities=30% Similarity=0.472 Sum_probs=366.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccc---cccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH---AAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~---~~~~ 178 (556)
.||+|||+|++|+.+|..|+++|.+|+|||++.+||+|++.||+|+|.++..+...+..+ +...+|+... ...+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELR---RAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHH---HHHhCCcccccCccccc
Confidence 489999999999999999999999999999988999999999999999998887766553 4556777642 4467
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE----ecCCEEEE--ccce--EEEeCeEEEeCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI----LGPQKVKF--GTDN--IVTAKDIIIATGSVPFVPKGIE 250 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~----~~~~~v~~--~~~~--~~~~d~lViAtG~~p~~p~~~~ 250 (556)
+++.+..+++...+.+...+.+.++..||+++.+.+.+ .+.+++.+ .++. ++.||+||||||++|..||++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 158 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAE 158 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCC
Confidence 89999999999988888888888999999999999988 66666655 3443 7999999999999998777655
Q ss_pred CCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEc
Q 008714 251 VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (556)
Q Consensus 251 ~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~ 330 (556)
.++..+++.++...+...|++++|||+|++|+|+|..|+++|.+||++++.+++++.+++++.+.+.+.|++ +||+++.
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~-~gV~i~~ 237 (466)
T PRK07845 159 PDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFAR-RGMTVLK 237 (466)
T ss_pred CCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHH-CCcEEEc
Confidence 556678888888887788999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred CceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCc
Q 008714 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409 (556)
Q Consensus 331 ~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~ 409 (556)
++.+.+++..++ .+.+.+.+| +++++|.|++++|++||++.++++..+++. ++|+|.||+++| |+
T Consensus 238 ~~~v~~v~~~~~--~~~v~~~~g------~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~------Ts 303 (466)
T PRK07845 238 RSRAESVERTGD--GVVVTLTDG------RTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSR------TS 303 (466)
T ss_pred CCEEEEEEEeCC--EEEEEECCC------cEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcc------cC
Confidence 999999976433 255666655 579999999999999999987778888876 679999999999 79
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEE
Q 008714 410 VPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKT 488 (556)
Q Consensus 410 ~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~ 488 (556)
+|||||+|||++.+++++.|..||++|++|+++.+ .++++..+|+++|++|++++||+||+||++. |+++.+...
T Consensus 304 ~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~----g~~~~~~~~ 379 (466)
T PRK07845 304 VPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSG----EVPARTVML 379 (466)
T ss_pred CCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhC----CCceEEEEE
Confidence 99999999999999999999999999999999865 4567889999999999999999999999874 899999999
Q ss_pred eccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 489 SFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 489 ~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
+|..+.|+.+++.++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 380 ~~~~~~~~~~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~a 428 (466)
T PRK07845 380 PLATNPRAKMSGLRDGFVKLFCRP-GTGVVIGGVVVAPRASELILPIALA 428 (466)
T ss_pred ecccCchhhhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 999999999989999999999998 6899999999999999999888665
No 21
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-65 Score=482.35 Aligned_cols=419 Identities=31% Similarity=0.498 Sum_probs=375.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccc-ccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV-HAA 176 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~ 176 (556)
..+||.+|||||.+|+.+|++++.+|.++.|+|.+ .+||+|++.||+|+|.|++.+.....++ +..+|||+. ..+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~---da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEME---DAKDYGFPINEEG 94 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhh---hhhhcCCcccccc
Confidence 45799999999999999999999999999999995 9999999999999999999988877764 456789986 568
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEE--ccce--EEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKF--GTDN--IVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~--~~~~--~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
.|+|+.+.+..+.++.++...++..+.+.+|+++.|++.++++..|.+ .++. .+++++++||||++|.+|.+++..
T Consensus 95 ~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E 174 (478)
T KOG0405|consen 95 SFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAE 174 (478)
T ss_pred CCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchh
Confidence 899999999999999999999999999999999999999998885554 4543 378999999999999999776643
Q ss_pred CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCc
Q 008714 253 GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGV 332 (556)
Q Consensus 253 ~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~ 332 (556)
.-+++|.+++|+.+|++++|||+|++|+|+|..|+.+|.+++++.|.+.+|..||+.+++.+.+.++. +||+++.++
T Consensus 175 --~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~-~ginvh~~s 251 (478)
T KOG0405|consen 175 --LGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEG-RGINVHKNS 251 (478)
T ss_pred --hccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhh-cceeecccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred eEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCC
Q 008714 333 FATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVP 411 (556)
Q Consensus 333 ~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~ 411 (556)
.++++....++....++.. + ....+|.++||+|+.||+..|++++.|+++ ++|.|.||++.+ |++|
T Consensus 252 ~~~~v~K~~~g~~~~i~~~-~------~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~------Tnvp 318 (478)
T KOG0405|consen 252 SVTKVIKTDDGLELVITSH-G------TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQN------TNVP 318 (478)
T ss_pred cceeeeecCCCceEEEEec-c------ccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecccc------CCCC
Confidence 9999988777644444332 2 345599999999999999999999999998 899999999999 8999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhC--CCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEe
Q 008714 412 HLYCIGDANGKMMLAHAASAQGISVVEQVTG--RDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTS 489 (556)
Q Consensus 412 ~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g--~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~ 489 (556)
+||++||+++...|.++|+..|+..++.+++ ++..++|..+|.++|++|+++.|||||+||.++|++.. +.++...
T Consensus 319 ~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~--i~vy~s~ 396 (478)
T KOG0405|consen 319 SIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGD--IKVYTSK 396 (478)
T ss_pred ceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccc--eEEEecC
Confidence 9999999999999999999999999999996 45678999999999999999999999999999886554 5567777
Q ss_pred ccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 490 FKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 490 ~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
|.....+.....++-++||++.. .+.+.+|.|+.|..+.|++|-.+..-
T Consensus 397 F~pm~~a~~~~k~kt~mKlvc~~-~~eKVvG~hm~G~~s~EilQGf~VAv 445 (478)
T KOG0405|consen 397 FNPMKYAMSGRKEKTLMKLVCAG-KSEKVVGVHMCGDDSAEILQGFAVAV 445 (478)
T ss_pred CchhHhHhhcCCcceEEEEEEec-CCCcEEEEEEecCCcHHHHhhhhhhe
Confidence 88888888888889999999987 67899999999999999998876543
No 22
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=6.6e-64 Score=531.34 Aligned_cols=417 Identities=34% Similarity=0.520 Sum_probs=358.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+|||+||||||||++||.+|+++|++|+|||++.+||+|.+.||+|+|.++..+...+.+.. ....+|+. ....+++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~--~~~~~gi~-~~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTK--EAKTFGIS-GEVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHH--HHHhcCCC-cCcccCH
Confidence 58999999999999999999999999999999999999999999999999877666554431 23456665 3345788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCCCCCCCCCCCCCCeE
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~~p~~~~~~~~~v 256 (556)
..+..+.+...+++.......++..+|+.+.+.+.+.+.+++.+. ++ .+++||+||||||++|+.||+.+..+ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~-~v 159 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSE-NV 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCC-cE
Confidence 888888888877777666677777899999999999998887663 33 47999999999999998776544333 46
Q ss_pred ecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 257 ITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 257 ~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
++.++.......|++++|||+|++|+|+|..|+++|.+|+++++.++++|.+|+++.+.+++.|++ .||++++++.+++
T Consensus 160 ~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~-~gV~i~~~~~v~~ 238 (466)
T PRK07818 160 VTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKK-LGVKILTGTKVES 238 (466)
T ss_pred EchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHH-CCCEEEECCEEEE
Confidence 676665555667899999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred EEecCCCCeEEEEEe--cCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCE
Q 008714 337 ITPAKDGKPVTIELI--DAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 337 i~~~~~g~~~~v~~~--~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
++.+ +..+.+.+. +| +..++++|.|++++|++||++.++++..++.. ++|+|.||+++| |+.|||
T Consensus 239 i~~~--~~~~~v~~~~~~g----~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~------Ts~p~I 306 (466)
T PRK07818 239 IDDN--GSKVTVTVSKKDG----KAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMR------TNVPHI 306 (466)
T ss_pred EEEe--CCeEEEEEEecCC----CeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcc------cCCCCE
Confidence 9864 233445554 33 22479999999999999999987778888876 778999999999 789999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCc-cC-CCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecc
Q 008714 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDH-VL-NHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFK 491 (556)
Q Consensus 414 ya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~-~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~ 491 (556)
||+|||++.+++++.|..||++||+||+|.+. ++ ++..+|.++|++|++++||+||+||+++ |+++.+..++|.
T Consensus 307 yAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~ 382 (466)
T PRK07818 307 YAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREE----GYDVKVAKFPFT 382 (466)
T ss_pred EEEeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhC----CCcEEEEEEECC
Confidence 99999999999999999999999999998653 34 7888999999999999999999999874 899999999999
Q ss_pred ccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 492 ANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 492 ~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
.+.|+.+++.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-
T Consensus 383 ~~~~~~~~~~~~g~~Klv~~~-~~~~ilG~~~vg~~a~e~i~~~~~ai 429 (466)
T PRK07818 383 ANGKAHGLGDPTGFVKLVADA-KYGELLGGHLIGPDVSELLPELTLAQ 429 (466)
T ss_pred ccchhhhcCCCCeEEEEEEEC-CCCeEEEEEEECCCHHHHHHHHHHHH
Confidence 999999888899999999998 68999999999999999998886553
No 23
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=7.1e-64 Score=529.57 Aligned_cols=415 Identities=30% Similarity=0.483 Sum_probs=364.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccc--ccccCH
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH--AAGYDR 180 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~ 180 (556)
+|+||||||||++||..|++.|.+|+|||++.+||+|++.||+|||.+++.+..++..+ +...+|++.. ....++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~---~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVK---KANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHH---HHHhcCccccCCCCccCH
Confidence 79999999999999999999999999999999999999999999999999888776653 3456677532 345789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc-eEEEeCeEEEeCCCCCCCCCCCCCCCCeEe
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD-NIVTAKDIIIATGSVPFVPKGIEVDGKTVI 257 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~-~~~~~d~lViAtG~~p~~p~~~~~~~~~v~ 257 (556)
..+..+.+...+++.......++..+++++.|.+.+.+.+++.+. ++ .+++||+||||||++|+.||++++++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~ 158 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWII 158 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 999999888888887777888888999999999999988887663 33 479999999999999988887777777788
Q ss_pred cccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 258 t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
++++...+...|++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++ .||++++++.++++
T Consensus 159 ~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~-~GI~i~~~~~V~~i 237 (458)
T PRK06912 159 NSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEN-DGVKIFTGAALKGL 237 (458)
T ss_pred cchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHH-CCCEEEECCEEEEE
Confidence 99999888888999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEec
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIG 417 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~G 417 (556)
+.++ ..+.+.. ++ +..++++|.|++|+|++||++.++++..++..+++.|.||+++| |+.|||||+|
T Consensus 238 ~~~~--~~v~~~~-~g----~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~------ts~~~VyA~G 304 (458)
T PRK06912 238 NSYK--KQALFEY-EG----SIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQ------TNVPHIYACG 304 (458)
T ss_pred EEcC--CEEEEEE-CC----ceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCee------cCCCCEEEEe
Confidence 7642 2233321 22 22479999999999999999887777778776444499999999 7899999999
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhh
Q 008714 418 DANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKAL 497 (556)
Q Consensus 418 D~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 497 (556)
||++.+++++.|..||++|+.|++|.+..+++..+|.++|++|++++||+||+||++. |+++.+.+.+|..+.|++
T Consensus 305 D~~~~~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~~~~~~ 380 (458)
T PRK06912 305 DVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQ----YGDIRIGEFPFTANGKAL 380 (458)
T ss_pred ecCCCcccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHC----CCCeEEEEEecCcchhHh
Confidence 9999999999999999999999998877777889999999999999999999999874 889999998999999999
Q ss_pred hcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 498 AENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 498 ~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+++.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-
T Consensus 381 ~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~ai 421 (458)
T PRK06912 381 IIGEQTGKVKVIVEP-KYQEIVGISIIGPRATELIGQGTVMI 421 (458)
T ss_pred hcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 989999999999998 68999999999999999999876653
No 24
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=9.6e-64 Score=530.55 Aligned_cols=421 Identities=36% Similarity=0.595 Sum_probs=369.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-------CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-------DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQ 172 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-------~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~ 172 (556)
.+|||+||||||||++||+.+++.|.+|+|||+ ..+||+|.+.+|+|+|.++..+..+.... ..+..+|++
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~--~~~~~~G~~ 80 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAG--HHFADHGIH 80 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHH--hhHHhcCcc
Confidence 359999999999999999999999999999998 78999999999999999988877665543 223566776
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCEEEEcc--ceEEEeCeEEEeCCCCCCCC
Q 008714 173 VHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGT--DNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~~~~--~~~~~~d~lViAtG~~p~~p 246 (556)
.....++++.+..+.+...+.+...+...++..+|+++.+.+.+.+ .++|.+.. +.+++||+||||||++|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~ 160 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHL 160 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCC
Confidence 5555689999999998888888888888888899999999998877 77887742 45799999999999999877
Q ss_pred CCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCce
Q 008714 247 KGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKI 326 (556)
Q Consensus 247 ~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV 326 (556)
|+.+.++..++++++.+.+...|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+.+.|++ .||
T Consensus 161 p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~gi 239 (475)
T PRK06327 161 PGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTK-QGL 239 (475)
T ss_pred CCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHH-cCc
Confidence 6666667778888888888888999999999999999999999999999999999999999999999999999987 899
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccC
Q 008714 327 DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDA 405 (556)
Q Consensus 327 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~ 405 (556)
+++.++.+++++.+++ .+.+.+.++. ++..++++|.|++++|++||++.+.++..++.. ++|+|.||+++|
T Consensus 240 ~i~~~~~v~~i~~~~~--~v~v~~~~~~--g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~---- 311 (475)
T PRK06327 240 DIHLGVKIGEIKTGGK--GVSVAYTDAD--GEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCR---- 311 (475)
T ss_pred EEEeCcEEEEEEEcCC--EEEEEEEeCC--CceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCc----
Confidence 9999999999987533 3556665531 222579999999999999999977677777776 789999999999
Q ss_pred CCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEE
Q 008714 406 NGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSV 485 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~ 485 (556)
|+.|||||+|||++.+++++.|..||++||+||++....+++..+|+++|++|++++||+||+||++. |+++.+
T Consensus 312 --Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~----g~~~~~ 385 (475)
T PRK06327 312 --TNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAE----GVEYKA 385 (475)
T ss_pred --cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHc----CCCEEE
Confidence 78999999999999899999999999999999998876678889999999999999999999999874 999999
Q ss_pred EEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 486 AKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 486 ~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
..++|..+.|+.++++++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 386 ~~~~~~~~~~~~~~~~~~g~~klv~d~-~~~~ilG~~~~g~~a~e~i~~~~~a 437 (475)
T PRK06327 386 GKFPFMANGRALAMGEPDGFVKIIADA-KTDEILGVHVIGPNASELIAEAVVA 437 (475)
T ss_pred EEEcccccchhhhcCCCCeEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 999999999999989999999999998 6899999999999999999877654
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.7e-64 Score=531.18 Aligned_cols=416 Identities=25% Similarity=0.435 Sum_probs=356.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhh-hcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMK-ALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 177 (556)
...|||+||||||||++||..|++.|++|+|||++.+||+|.+.||+|+|.+++.+...+.... .. .+|++...+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~---~~~~~g~~~~~~~ 80 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRE---SPFDDGLSAQAPV 80 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhh---ccccCCcccCCCc
Confidence 4579999999999999999999999999999999999999999999999999988776654432 12 3466544566
Q ss_pred cCHHHHHHHHHHHHHHHHHH-HHHHHHHc-CcEEEeceEEEecCCE--EEEccc--eEEEeCeEEEeCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNN-LTNSMKAL-GVDILTGVGTILGPQK--VKFGTD--NIVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-gv~~~~g~~~~~~~~~--v~~~~~--~~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
+++..+..+.+.....+... ....++.. +|+++.+.+.+++... |.+.++ .+++||+||||||++|+.|++++.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~ 160 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGL 160 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCC
Confidence 88999988888777766543 44445544 8999999998877654 444554 479999999999999999988777
Q ss_pred CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
+...++++++...+...|++++|||+|++|+|+|..|.++|.+|+++++ +++++.+++++.+.+++.+++ .||+++++
T Consensus 161 ~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~-~GI~v~~~ 238 (468)
T PRK14694 161 AETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRR-EGIEVLKQ 238 (468)
T ss_pred CCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHh-CCCEEEeC
Confidence 6556777777777777899999999999999999999999999999986 578899999999999999987 89999999
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVP 411 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~ 411 (556)
+.+++++.++ ..+.+.+.+ .++++|.|++++|++||++.+.++..+++.++|+|.||+++| |++|
T Consensus 239 ~~v~~i~~~~--~~~~v~~~~-------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~------Ts~~ 303 (468)
T PRK14694 239 TQASEVDYNG--REFILETNA-------GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQ------TTVS 303 (468)
T ss_pred CEEEEEEEcC--CEEEEEECC-------CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcc------cCCC
Confidence 9999997642 233444322 369999999999999999987777778777889999999999 7899
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecc
Q 008714 412 HLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFK 491 (556)
Q Consensus 412 ~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~ 491 (556)
||||+|||++.+.+.+.|..||++||.||++.+..+++..+|.++|++|++++||+||+||++. |+++.+.+++|.
T Consensus 304 ~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~ 379 (468)
T PRK14694 304 GIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQ----GYDTDSRTLDLE 379 (468)
T ss_pred CEEEEeecCCCcccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHHHHHc----CCceEEEEEecc
Confidence 9999999999999999999999999999998877788889999999999999999999999874 899999999999
Q ss_pred ccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 492 ANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 492 ~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
.+.+++..+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-
T Consensus 380 ~~~~~~~~~~~~g~~klv~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai 426 (468)
T PRK14694 380 NVPRALVNFDTGGFIKMVAER-GSGRLLGVQVVAGEAGELIQTAVMAL 426 (468)
T ss_pred cchhhhhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 999999988889999999998 68999999999999999998776553
No 26
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.6e-63 Score=528.91 Aligned_cols=415 Identities=26% Similarity=0.395 Sum_probs=355.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
+.+|||+|||+|+||+++|..|+++|.+|+|||+ +.+||+|+++||+|+|.|++.+...+.... ...+|++...+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~---~~~~g~~~~~~~ 90 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRS---NPFDGVEAVAPS 90 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhh---ccccCcccCCCc
Confidence 3469999999999999999999999999999999 599999999999999999988877665532 234566655566
Q ss_pred cCHHHHHHHHHHHHHHHHH-HHHHHHHHc-CcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRN-NLTNSMKAL-GVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
+++..+..+.+....++.. .+...++.. +|+++.|.+.+.+.+++.+ .++ .++.||+||||||++|..|++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~ 170 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGL 170 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCc
Confidence 7888888877777766643 245555554 9999999999998877665 343 369999999999999999987776
Q ss_pred CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
+...+++.++.+.....|++++|||+|++|+|+|..|.++|.+||++++. ++++.+|+++.+.+++.+++ .||+++++
T Consensus 171 ~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~-~GV~i~~~ 248 (479)
T PRK14727 171 MDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEK-EGIEVLNN 248 (479)
T ss_pred CccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHh-CCCEEEcC
Confidence 55456666666655667899999999999999999999999999999874 68888999999999999987 89999999
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLV 410 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~ 410 (556)
+.+++++.+++ .+.+...+ .++++|.|++|+|+.||+..+.++..++.. ++|+|.||+++| |++
T Consensus 249 ~~V~~i~~~~~--~~~v~~~~-------g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~------Ts~ 313 (479)
T PRK14727 249 TQASLVEHDDN--GFVLTTGH-------GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAME------TSA 313 (479)
T ss_pred cEEEEEEEeCC--EEEEEEcC-------CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCee------cCC
Confidence 99999986432 24444433 368999999999999999988778888876 678999999999 789
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEec
Q 008714 411 PHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSF 490 (556)
Q Consensus 411 ~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~ 490 (556)
|||||+|||++.+.+++.|..||++||.||++.+..+++..+|.++|++|++++||+||+||++. |+++.+..+++
T Consensus 314 ~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~----g~~~~~~~~~~ 389 (479)
T PRK14727 314 PDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLS----GIETISRVLTM 389 (479)
T ss_pred CCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHHHHHc----CCceEEEEEEc
Confidence 99999999999999999999999999999999877788888999999999999999999999874 89999999999
Q ss_pred cccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHh
Q 008714 491 KANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADV 538 (556)
Q Consensus 491 ~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~ 538 (556)
..+.+++..+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+
T Consensus 390 ~~~~~~~~~~~~~g~~Kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~a 436 (479)
T PRK14727 390 ENVPRALANFETDGFIKLVAEE-GTRKLIGAQILAHEGGELIQSAALA 436 (479)
T ss_pred ccCchhhhcCCCCeEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHH
Confidence 9999998887889999999998 6899999999999999888776554
No 27
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-63 Score=529.34 Aligned_cols=420 Identities=33% Similarity=0.515 Sum_probs=363.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||+||||||||++||..|++.|++|+|||++.+||+|++.||+|+|.+++.+..++..+ +...+|++.....++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~---~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAK---HAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHH---HHHhcCCCcCCCccC
Confidence 35999999999999999999999999999999988999999999999999999887766553 345667664445678
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEe
Q 008714 180 RQGVADHANNLATKIRNNL-TNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~ 257 (556)
++.+..+.+.....+...+ ...++..+|+++.+.+.+.+.+.+.+ ++.++.||+||||||+. |.+|+.....+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~ 157 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLL 157 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEE
Confidence 8999888888877776665 55667789999999998888888887 45789999999999999 666654333456688
Q ss_pred cccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 258 t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
++++.+.+...|++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+++.+++ . |++++++.+.++
T Consensus 158 ~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~-I~i~~~~~v~~i 235 (460)
T PRK06292 158 TSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSK-E-FKIKLGAKVTSV 235 (460)
T ss_pred CchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhh-c-cEEEcCCEEEEE
Confidence 88888888888999999999999999999999999999999999999999999999999999987 7 999999999999
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
+..++ ..+.+++.++ ++.++++|.|++++|++||++.+.++..++.. ++|+|.||+++| |+.|||||+
T Consensus 236 ~~~~~-~~v~~~~~~~----~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~------ts~~~IyA~ 304 (460)
T PRK06292 236 EKSGD-EKVEELEKGG----KTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQ------TSVPGIYAA 304 (460)
T ss_pred EEcCC-ceEEEEEcCC----ceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcc------cCCCCEEEE
Confidence 86432 2344433333 23579999999999999999987778888876 689999999999 789999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHhCC-CccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccch
Q 008714 417 GDANGKMMLAHAASAQGISVVEQVTGR-DHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 495 (556)
Q Consensus 417 GD~~~~~~~~~~A~~qg~~aa~~i~g~-~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 495 (556)
|||++.+++++.|..||++||.||++. ....++..+|+++|++|++++||+||+||++. |+++.+..++|..+.|
T Consensus 305 GD~~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~----g~~~~~~~~~~~~~~~ 380 (460)
T PRK06292 305 GDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAA----GIDYVVGEVPFEAQGR 380 (460)
T ss_pred EecCCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhc----CCCeEEEEEecccchH
Confidence 999999999999999999999999984 45567788999999999999999999999864 8999999999999999
Q ss_pred hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhc
Q 008714 496 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMT 541 (556)
Q Consensus 496 a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~ 541 (556)
+.+.+.++||+||++|+ .+++|||+|++|+++.++|+.++.+...
T Consensus 381 ~~~~~~~~g~~klv~d~-~~~~ilG~~~vg~~a~e~i~~~~~ai~~ 425 (460)
T PRK06292 381 ARVMGKNDGFVKVYADK-KTGRLLGAHIIGPDAEHLIHLLAWAMQQ 425 (460)
T ss_pred HHhcCCCCeEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 99988899999999998 6899999999999999999887665443
No 28
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.2e-63 Score=526.13 Aligned_cols=422 Identities=25% Similarity=0.378 Sum_probs=359.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC---------cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD---------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGL 171 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~---------~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~ 171 (556)
+|||+|||+||||+.+|..+++.|.+|+|||+. .+||+|++.||+|||.|++.+...+... +...+|+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~---~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALK---DSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHh---hhhhcCc
Confidence 489999999999999999999999999999972 5899999999999999999888766553 3455677
Q ss_pred cccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEc--cc--eEEEeCeEEEeCCCCCCCC
Q 008714 172 QVHA-AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFG--TD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~--~~--~~~~~d~lViAtG~~p~~p 246 (556)
.... ..+|+..+..+++..+..+...+...++..||+++.|.+.+.++++|.+. ++ .+++||+||||||++|+.|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p 158 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYP 158 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence 6443 56899999999999999988888888999999999999999999988774 22 4799999999999999988
Q ss_pred CCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCce
Q 008714 247 KGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKI 326 (556)
Q Consensus 247 ~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV 326 (556)
+.++... ..+++++++.+...|++++|||+|++|+|+|..|+++|.+||++.+ +.+++.+|+++.+.+++.|++ .||
T Consensus 159 ~ipG~~~-~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~-~gV 235 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEE-HGV 235 (484)
T ss_pred CCCCccc-eeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHH-cCC
Confidence 8666432 3567888888878899999999999999999999999999999997 578899999999999999987 899
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-C-CCceeeCCCCcccc
Q 008714 327 DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-Q-RGFVPVDERMRVID 404 (556)
Q Consensus 327 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~-~G~i~vd~~l~~~~ 404 (556)
++++++.+.+++..++ .+.+++.++. +..++++|.|++++|++||++.++++..++.. + +|+|.||+++|
T Consensus 236 ~i~~~~~v~~v~~~~~--~~~v~~~~~~---~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~--- 307 (484)
T TIGR01438 236 KFKRQFVPIKVEQIEA--KVKVTFTDST---NGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQ--- 307 (484)
T ss_pred EEEeCceEEEEEEcCC--eEEEEEecCC---cceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcc---
Confidence 9999999999886432 3556666541 12479999999999999999988888888876 3 48999999999
Q ss_pred CCCCcCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCc-
Q 008714 405 ANGNLVPHLYCIGDANG-KMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGF- 481 (556)
Q Consensus 405 ~~~t~~~~Vya~GD~~~-~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~- 481 (556)
|+.|||||+|||+. .+++++.|.+||+++++||++.. ...++..+|+++|++|++++||+||+||++++ ++
T Consensus 308 ---Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~---g~~ 381 (484)
T TIGR01438 308 ---TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKF---GEE 381 (484)
T ss_pred ---cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhc---CCC
Confidence 79999999999986 67899999999999999999754 34678889999999999999999999998752 44
Q ss_pred eEEEEEEeccccchhhhcCC--cceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhcc
Q 008714 482 EVSVAKTSFKANTKALAENE--GEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMTF 542 (556)
Q Consensus 482 ~~~~~~~~~~~~~~a~~~~~--~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~~ 542 (556)
.+.+...+|..+.++....+ ++||+||++++..+++|||+|++|+++.++|+.++.+...-
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~ 444 (484)
T TIGR01438 382 NIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCG 444 (484)
T ss_pred cEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcC
Confidence 57777888888888887655 67999999964357999999999999999998887654433
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.6e-62 Score=532.00 Aligned_cols=418 Identities=27% Similarity=0.426 Sum_probs=356.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||+||||||||++||..|+++|.+|+|||++.+||+|+++||+|+|.++..+...+..... ...+|++...+..+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~--~~~~g~~~~~~~~~ 174 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRES--PFDGGIAATVPTID 174 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcc--cccCCccCCCCccC
Confidence 3699999999999999999999999999999999999999999999999999888766654321 11147665556678
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHc-CcEEEeceEEEecCCEEEE--ccc--eEEEeCeEEEeCCCCCCCCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNN-LTNSMKAL-GVDILTGVGTILGPQKVKF--GTD--NIVTAKDIIIATGSVPFVPKGIEVDG 253 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-gv~~~~g~~~~~~~~~v~~--~~~--~~~~~d~lViAtG~~p~~p~~~~~~~ 253 (556)
+..+..+.+....++... +...+... +|+++.+.+.+.+.+.+.+ .++ .+++||+||||||++|..|++++.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~ 254 (561)
T PRK13748 175 RSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKE 254 (561)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCc
Confidence 888888888777766542 44555655 8999999999988876655 333 36999999999999999998777665
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..+++..+.+.....|++++|||+|++|+|+|..|.++|.+|+++++. .+++.+|+++.+.+++.|++ .||++++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~-~gI~i~~~~~ 332 (561)
T PRK13748 255 TPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRA-EGIEVLEHTQ 332 (561)
T ss_pred cceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHH-CCCEEEcCCE
Confidence 556777666666677899999999999999999999999999999985 57888999999999999987 8999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPH 412 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~ 412 (556)
+++++.++ + .+.+.+.+ .++++|.|++++|++||++.+.++..++.. ++|+|.||+++| |++||
T Consensus 333 v~~i~~~~-~-~~~v~~~~-------~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~------Ts~~~ 397 (561)
T PRK13748 333 ASQVAHVD-G-EFVLTTGH-------GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMR------TSVPH 397 (561)
T ss_pred EEEEEecC-C-EEEEEecC-------CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcc------cCCCC
Confidence 99998642 2 23444332 369999999999999999987778888876 678999999999 79999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccc
Q 008714 413 LYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKA 492 (556)
Q Consensus 413 Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~ 492 (556)
|||+|||++.+++++.|..||++|+.||+|.+..+++..+|.++|++|++++||+||+||++. |+++.+..++|..
T Consensus 398 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~----g~~~~~~~~~~~~ 473 (561)
T PRK13748 398 IYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHD----GIETDSRTLTLDN 473 (561)
T ss_pred EEEeeecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHHHHHc----CCCeEEEEEeccc
Confidence 999999999999999999999999999998877788888999999999999999999999874 8999999999999
Q ss_pred cchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhc
Q 008714 493 NTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMT 541 (556)
Q Consensus 493 ~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~ 541 (556)
+.+++..+.++||+||++|+ .+++|||+|++|+.+.++|+.++.+-..
T Consensus 474 ~~~~~~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~ai~~ 521 (561)
T PRK13748 474 VPRALANFDTRGFIKLVIEE-GSGRLIGVQAVAPEAGELIQTAALAIRN 521 (561)
T ss_pred CchhhhcCCCCeEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 99998887889999999998 5799999999999999999887655443
No 30
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-61 Score=510.26 Aligned_cols=400 Identities=26% Similarity=0.438 Sum_probs=338.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.|||+||||||||++||..|+++|++|+|||++ .+||+|.+.||+|+|.+++... ...
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~--------------------~~~ 62 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--------------------QHT 62 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc--------------------cCC
Confidence 489999999999999999999999999999994 5899999999999998865432 024
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHcCcEEEeceEEEecCCEEEE--ccce-EEEeCeEEEeCCCCCCCCCCCCCC-C
Q 008714 179 DRQGVADHANNLATKIRNNLTNSM-KALGVDILTGVGTILGPQKVKF--GTDN-IVTAKDIIIATGSVPFVPKGIEVD-G 253 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~~~~g~~~~~~~~~v~~--~~~~-~~~~d~lViAtG~~p~~p~~~~~~-~ 253 (556)
++.....+.+...+.+.......+ +..+++++.+.+.+.+.+.+.+ .++. ++.||+||||||++|..|+.++.+ .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~ 142 (441)
T PRK08010 63 DFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTT 142 (441)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCC
Confidence 555555555544444433222333 3349999999988888776654 3443 699999999999999988877653 2
Q ss_pred CeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 254 KTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 254 ~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
..++++++++.+...|++++|||+|++|+|+|..|.++|.+||+++++++++|.+++++.+.+.+.|++ .||++++++.
T Consensus 143 ~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~-~gV~v~~~~~ 221 (441)
T PRK08010 143 PGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRD-QGVDIILNAH 221 (441)
T ss_pred CCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHh-CCCEEEeCCE
Confidence 347888888877788999999999999999999999999999999999999999999999999999987 8999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPH 412 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~ 412 (556)
+++++.++ ..+.++..+ .++++|.|++|+|++||++.+.++..++.. ++|+|.||+++| |++||
T Consensus 222 v~~i~~~~--~~v~v~~~~-------g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~------Ts~~~ 286 (441)
T PRK08010 222 VERISHHE--NQVQVHSEH-------AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLH------TTADN 286 (441)
T ss_pred EEEEEEcC--CEEEEEEcC-------CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcc------cCCCC
Confidence 99998643 224444333 358999999999999999987777788876 679999999999 78999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCC-Cc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEec
Q 008714 413 LYCIGDANGKMMLAHAASAQGISVVEQVTGR-DH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSF 490 (556)
Q Consensus 413 Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~-~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~ 490 (556)
|||+|||++.+++++.|..||+++++||+|+ .. ..++..+|.++|++|++++||+||+||++. |+++.+..++|
T Consensus 287 IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~----g~~~~~~~~~~ 362 (441)
T PRK08010 287 IWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARES----GADIQVVTLPV 362 (441)
T ss_pred EEEeeecCCCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHc----CCCeEEEEEec
Confidence 9999999999999999999999999999985 32 346778999999999999999999999874 99999999999
Q ss_pred cccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhc
Q 008714 491 KANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMT 541 (556)
Q Consensus 491 ~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~ 541 (556)
..+.|+.++++++||+||++|+ .+++|||+|++|+.+.++|+.++.+-..
T Consensus 363 ~~~~~~~~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~ai~~ 412 (441)
T PRK08010 363 AAIPRARVMNDTRGVLKAIVDN-KTQRILGASLLCVDSHEMINIVKMVMDA 412 (441)
T ss_pred CcChhhhhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 9999999999999999999998 6899999999999999999988766433
No 31
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=8e-61 Score=508.99 Aligned_cols=416 Identities=25% Similarity=0.375 Sum_probs=348.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC---------cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD---------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALG 170 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~---------~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g 170 (556)
.+|||+||||||||++||..|+++|.+|+|||+. .+||+|++.||+|+|.+++.+...+..+. ....+|
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~--~~~~~g 81 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHH--DSQMYG 81 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHh--HHhcCC
Confidence 3599999999999999999999999999999962 48999999999999999988877665432 123567
Q ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEcc---ceEEEeCeEEEeCCCCCCCCC
Q 008714 171 LQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT---DNIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~---~~~~~~d~lViAtG~~p~~p~ 247 (556)
+.... ..++..+..+++..+..+...+...++..+|+++.+.+.+.+.++|.+.+ +.+++||+||||||+.|..|+
T Consensus 82 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~ 160 (499)
T PTZ00052 82 WKTSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160 (499)
T ss_pred CCCCC-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCC
Confidence 65433 67899999999888888877777777788999999999999988887743 357999999999999998874
Q ss_pred -CCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCce
Q 008714 248 -GIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKI 326 (556)
Q Consensus 248 -~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV 326 (556)
+++.. ...+++++++.+...|++++|||+|++|+|+|..|+++|.+||++.+ +.+++.+|+++.+.+++.|++ .||
T Consensus 161 ~i~G~~-~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~-~GV 237 (499)
T PTZ00052 161 DVPGAK-EYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRGFDRQCSEKVVEYMKE-QGT 237 (499)
T ss_pred CCCCcc-ceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc-CcccccCCHHHHHHHHHHHHH-cCC
Confidence 45433 23567788887777899999999999999999999999999999987 467888999999999999987 899
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccC
Q 008714 327 DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDA 405 (556)
Q Consensus 327 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~ 405 (556)
+++.++.+.+++..++ .+.+.+.++ +++++|.|++++|++||+++++++..+++. ++|++.+++. +
T Consensus 238 ~i~~~~~v~~v~~~~~--~~~v~~~~g------~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~---- 304 (499)
T PTZ00052 238 LFLEGVVPINIEKMDD--KIKVLFSDG------TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-C---- 304 (499)
T ss_pred EEEcCCeEEEEEEcCC--eEEEEECCC------CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-c----
Confidence 9999999999886432 255666665 578999999999999999988778888876 6788777776 7
Q ss_pred CCCcCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCCCc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcC-ce
Q 008714 406 NGNLVPHLYCIGDANG-KMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEG-FE 482 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~-~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~-~~ 482 (556)
|+.|+|||+|||+. .+++++.|.+||+++|+||++... ..++..+|+++|++|++++||+||+||++++ + ++
T Consensus 305 --Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~---~~~~ 379 (499)
T PTZ00052 305 --TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKY---GEDD 379 (499)
T ss_pred --CCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhc---CCCC
Confidence 79999999999984 678999999999999999998653 4678889999999999999999999999752 4 46
Q ss_pred EEEEEEeccccchhhhcC---------------CcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhh
Q 008714 483 VSVAKTSFKANTKALAEN---------------EGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVY 539 (556)
Q Consensus 483 ~~~~~~~~~~~~~a~~~~---------------~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~ 539 (556)
+.+...+|..+.++.... .++||+||+++++.+++|||+|++|+.|.++|+.++..-
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai 451 (499)
T PTZ00052 380 IEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLAL 451 (499)
T ss_pred EEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 777787787655544322 268999999997447999999999999999999886653
No 32
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=2.1e-60 Score=505.35 Aligned_cols=418 Identities=38% Similarity=0.619 Sum_probs=366.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
|||+||||||||++||.+|+++|++|+|||++.+||+|.+.||+|+|.++..+..++.+. ....+|+......+++.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIK---HAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHH---HHHhcCCCCCCCcCCHH
Confidence 899999999999999999999999999999988999999999999999998887776654 24566766555668888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEcc--c-eEEEeCeEEEeCCCCCCCCCCC-CCCCCeEe
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT--D-NIVTAKDIIIATGSVPFVPKGI-EVDGKTVI 257 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~--~-~~~~~d~lViAtG~~p~~p~~~-~~~~~~v~ 257 (556)
.+..+.+...+++...+...+++.||+++.+.+.+.+.+.+.+.. + .++.||+||||||++|+.|+++ +.++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~ 158 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVI 158 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEE
Confidence 888888888888877778888889999999999888887776643 2 4799999999999999988774 55666788
Q ss_pred cccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 258 TSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 258 t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
++++.+.+...+++++|||+|.+|+|+|..|.+.|.+||++++.++++|.+++++.+.+.+.+++ .||++++++.+.++
T Consensus 159 ~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~-~gi~i~~~~~v~~i 237 (461)
T TIGR01350 159 TSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKK-KGVKILTNTKVTAV 237 (461)
T ss_pred cchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHH-cCCEEEeCCEEEEE
Confidence 99888888888999999999999999999999999999999999999999999999999999987 89999999999999
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEe
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCI 416 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~ 416 (556)
+.+++ .+.+++.++ ...++++|.|++|+|++||+..+.++..++.. ++|+|.||+++| |+.|+|||+
T Consensus 238 ~~~~~--~v~v~~~~g----~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~------t~~~~Iyai 305 (461)
T TIGR01350 238 EKNDD--QVVYENKGG----ETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMR------TNVPGIYAI 305 (461)
T ss_pred EEeCC--EEEEEEeCC----cEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcc------cCCCCEEEe
Confidence 86432 244555443 12479999999999999999866667777776 679999999999 789999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHhCCCc-cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccch
Q 008714 417 GDANGKMMLAHAASAQGISVVEQVTGRDH-VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTK 495 (556)
Q Consensus 417 GD~~~~~~~~~~A~~qg~~aa~~i~g~~~-~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~ 495 (556)
|||++.+++++.|..||+++|+||.++.. .+++...|.++|++|+++++|++|+||+++ |+++.+.+.+|....+
T Consensus 306 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~----g~~~~~~~~~~~~~~~ 381 (461)
T TIGR01350 306 GDVIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEA----GYDVKIGKFPFAANGK 381 (461)
T ss_pred eecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhC----CCCeEEEEEeCccchH
Confidence 99999999999999999999999998765 677888999999999999999999999875 8999999999999999
Q ss_pred hhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhh
Q 008714 496 ALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYM 540 (556)
Q Consensus 496 a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~ 540 (556)
+.+.+.++||+||++|+ .+++|||+|++|+++.++|+.++.+..
T Consensus 382 ~~~~~~~~g~~kl~~~~-~~~~ilG~~~~g~~a~e~i~~~~~ai~ 425 (461)
T TIGR01350 382 ALALGETDGFVKIIADK-KTGEILGAHIIGPHATELISEAVLAME 425 (461)
T ss_pred HHhcCCCceEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 99888889999999998 689999999999999999888765543
No 33
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-60 Score=502.40 Aligned_cols=401 Identities=28% Similarity=0.449 Sum_probs=347.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+|||+||||||||++||..|+++|++|+||||+ .+||+|++.||+|+|.++..... ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------------------~~ 62 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------------------NL 62 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------------------CC
Confidence 599999999999999999999999999999994 37999999999999998765431 24
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEcc---ceEEEeCeEEEeCCCCCCCCCCCCCC-CC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT---DNIVTAKDIIIATGSVPFVPKGIEVD-GK 254 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~---~~~~~~d~lViAtG~~p~~p~~~~~~-~~ 254 (556)
++..+..+.+....++.....+.+.+.||+++.+.+.+.+.++|.+.. ..++.||+||||||++|+.|++++.. ..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~ 142 (438)
T PRK07251 63 SFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSK 142 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCC
Confidence 666677777766677766666778888999999999988888887743 24799999999999999988877653 34
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
.+++++++..+...|++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+++.+++ .||++++++.+
T Consensus 143 ~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~-~GI~i~~~~~V 221 (438)
T PRK07251 143 HVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEE-DGITFLLNAHT 221 (438)
T ss_pred cEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHH-cCCEEEcCCEE
Confidence 68888888888788999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCE
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
++++.++ ..+.+. .++ .++++|.|++|+|++|+++.+++++.++.. ++|+|.||+++| |+.|||
T Consensus 222 ~~i~~~~--~~v~v~-~~g------~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~------t~~~~I 286 (438)
T PRK07251 222 TEVKNDG--DQVLVV-TED------ETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQ------TSVPGV 286 (438)
T ss_pred EEEEecC--CEEEEE-ECC------eEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcc------cCCCCE
Confidence 9998642 223333 233 579999999999999999988777777765 678999999999 789999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCc--cCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEecc
Q 008714 414 YCIGDANGKMMLAHAASAQGISVVEQVTGRDH--VLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFK 491 (556)
Q Consensus 414 ya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~ 491 (556)
||+|||++.+++.+.|..||++++.++++.+. ..++..+|.++|++|+++++|+||+||++. |+++.+.+.++.
T Consensus 287 yaiGD~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~----g~~~~~~~~~~~ 362 (438)
T PRK07251 287 FAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEA----GLPYAVKELLVA 362 (438)
T ss_pred EEeeecCCCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhc----CCCeEEEEEECC
Confidence 99999999999999999999999999997643 235668999999999999999999999874 899999999999
Q ss_pred ccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHHhhhcc
Q 008714 492 ANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLADVYMTF 542 (556)
Q Consensus 492 ~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~~~~~~ 542 (556)
.+.++..+++++||+||++|+ .+++|||+|++|+.+.++|+.++.+-..-
T Consensus 363 ~~~~~~~~~~~~g~~kli~d~-~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 412 (438)
T PRK07251 363 AMPRAHVNNDLRGAFKVVVNT-ETKEILGATLFGEGSQEIINLITMAMDNK 412 (438)
T ss_pred cchhhhhcCCCcEEEEEEEEC-CCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 999999889999999999998 68999999999999999999987664433
No 34
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-57 Score=423.70 Aligned_cols=424 Identities=27% Similarity=0.419 Sum_probs=357.8
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC--C-------cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhh
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG--D-------VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKA 168 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk--~-------~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~ 168 (556)
.+.+||++|||||.+||+||.+++.+|.+|.++|- + -+||+|+|.||||+|.|...+-.-+.++ +...
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~---da~k 92 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALH---DARK 92 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHH---HHHh
Confidence 34679999999999999999999999999999994 2 2689999999999999987776655553 4467
Q ss_pred cCccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEcc----ceEEEeCeEEEeCCCC
Q 008714 169 LGLQVHA--AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGT----DNIVTAKDIIIATGSV 242 (556)
Q Consensus 169 ~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~----~~~~~~d~lViAtG~~ 242 (556)
|||+... ...||..+.+..++.+..+...++-.+++..|+++...+.|++++++...+ .+.++++.+|||||.+
T Consensus 93 yGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~R 172 (503)
T KOG4716|consen 93 YGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLR 172 (503)
T ss_pred hCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCC
Confidence 8888665 456888888877777766665556667778899999999999999877532 3468999999999999
Q ss_pred CCCCCCCCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhC
Q 008714 243 PFVPKGIEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLIN 322 (556)
Q Consensus 243 p~~p~~~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~ 322 (556)
|+.|.+++.. ..-+|+|+++.+...|.+.+|||+|++|+|+|.+|+.+|.+||++.|+ -+|.+||.++++.+.+.+++
T Consensus 173 PrYp~IpG~~-Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~ 250 (503)
T KOG4716|consen 173 PRYPDIPGAK-EYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEE 250 (503)
T ss_pred CCCCCCCCce-eeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecccccHHHHHHHHHHHHH
Confidence 9999877643 346799999999999999999999999999999999999999999986 47889999999999999997
Q ss_pred CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc--CCCceeeCCCC
Q 008714 323 PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT--QRGFVPVDERM 400 (556)
Q Consensus 323 ~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~--~~G~i~vd~~l 400 (556)
+||++.....+.+|+..++++ ..|...+..+. ++.+-++|.|+||+|+.++++.++++++|++. ..|.|.||+.-
T Consensus 251 -~Gikf~~~~vp~~Veq~~~g~-l~v~~k~t~t~-~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e 327 (503)
T KOG4716|consen 251 -RGIKFLRKTVPERVEQIDDGK-LRVFYKNTNTG-EEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEE 327 (503)
T ss_pred -hCCceeecccceeeeeccCCc-EEEEeeccccc-ccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHH
Confidence 999999998888998876665 44555443222 23456799999999999999999999999987 78899999988
Q ss_pred ccccCCCCcCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCC-ccCCCCCccEEEecccceeEecCCHHHHHHhhhh
Q 008714 401 RVIDANGNLVPHLYCIGDAN-GKMMLAHAASAQGISVVEQVTGRD-HVLNHLSIPAACFTHPEISMVGLTEPQAREKAEK 478 (556)
Q Consensus 401 ~~~~~~~t~~~~Vya~GD~~-~~~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~ 478 (556)
+ |++|+|||+||+. +.|.+...|++.|+.+|+.+++.. ...+|..+|..+||.+|+++|||+|++|.++|++
T Consensus 328 ~------t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~ 401 (503)
T KOG4716|consen 328 A------TNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGE 401 (503)
T ss_pred h------cCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCc
Confidence 8 8999999999997 668999999999999999998655 4579999999999999999999999999999887
Q ss_pred cCceEEEEEEeccccchhhhcCCc-ceEEEEEEcCCCCCccceEEEeCCCchHHHHHHHH
Q 008714 479 EGFEVSVAKTSFKANTKALAENEG-EGLAKGVPRNFASSERTNQHSDRPSKPNLVKKLAD 537 (556)
Q Consensus 479 ~~~~~~~~~~~~~~~~~a~~~~~~-~g~~kli~~~~~~~~~~g~~~~g~~~~~~~~~l~~ 537 (556)
.+| ++..-.|+....-+-+.+. ..++|++++.+...+++|.|++||+|++.++-.|.
T Consensus 402 dni--evfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaa 459 (503)
T KOG4716|consen 402 DNI--EVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAA 459 (503)
T ss_pred ccE--EEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHH
Confidence 765 4456666666555544433 47899999998889999999999999999986643
No 35
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=2.1e-49 Score=416.49 Aligned_cols=366 Identities=17% Similarity=0.195 Sum_probs=276.8
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecCC-cCCccccccCC-CCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGD-VVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~-~~GG~~~~~g~-ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.+|||||||+||+.||.+|+++ +.+|+|||++ .++ +..| +|... .+ .
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~~lp~~~----~~---------------------~ 52 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCALPYYI----GE---------------------V 52 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccCCcchhh----cC---------------------c
Confidence 3799999999999999999987 6889999994 322 1111 11100 00 0
Q ss_pred cCHHHHHHHHHHHHHHHHHH-HHHHHHHcCcEEEec-eEEEe--cCCEEEEccc-----eEEEeCeEEEeCCCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNN-LTNSMKALGVDILTG-VGTIL--GPQKVKFGTD-----NIVTAKDIIIATGSVPFVPKG 248 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gv~~~~g-~~~~~--~~~~v~~~~~-----~~~~~d~lViAtG~~p~~p~~ 248 (556)
.... +.+... .....++.|++++.+ .+..+ +.+.|.+.++ .++.||+||||||++|+.|+.
T Consensus 53 ~~~~----------~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~ 122 (438)
T PRK13512 53 VEDR----------KYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122 (438)
T ss_pred cCCH----------HHcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCC
Confidence 0000 000000 012234568998764 44433 4566766432 247899999999999988763
Q ss_pred CCCCCCeEeccc---ccccC-----CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHH
Q 008714 249 IEVDGKTVITSD---HALKL-----EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVL 320 (556)
Q Consensus 249 ~~~~~~~v~t~~---~~~~~-----~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l 320 (556)
++..+++.. +...+ ...+++++|||+|++|+|+|..|+++|.+||++++.+++++.+++++.+.+.+.|
T Consensus 123 ---~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l 199 (438)
T PRK13512 123 ---ESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDEL 199 (438)
T ss_pred ---CCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHH
Confidence 233344332 22111 2357999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCC
Q 008714 321 INPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDER 399 (556)
Q Consensus 321 ~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~ 399 (556)
++ .||++++++.+++++.. .+++.++ +++++|.|++|+|++||++++ +..++.. ++|+|.||++
T Consensus 200 ~~-~gI~i~~~~~v~~i~~~------~v~~~~g------~~~~~D~vl~a~G~~pn~~~l--~~~gl~~~~~G~i~Vd~~ 264 (438)
T PRK13512 200 DK-REIPYRLNEEIDAINGN------EVTFKSG------KVEHYDMIIEGVGTHPNSKFI--ESSNIKLDDKGFIPVNDK 264 (438)
T ss_pred Hh-cCCEEEECCeEEEEeCC------EEEECCC------CEEEeCEEEECcCCCcChHHH--HhcCcccCCCCcEEECCC
Confidence 87 89999999999999631 3566665 578999999999999999865 5666665 6799999999
Q ss_pred CccccCCCCcCCCEEEecccCC----------CCCcHHHHHHHHHHHHHHHhCCCc-cC-CCCCccEEEecccceeEecC
Q 008714 400 MRVIDANGNLVPHLYCIGDANG----------KMMLAHAASAQGISVVEQVTGRDH-VL-NHLSIPAACFTHPEISMVGL 467 (556)
Q Consensus 400 l~~~~~~~t~~~~Vya~GD~~~----------~~~~~~~A~~qg~~aa~~i~g~~~-~~-~~~~~p~~~~~~~~i~~vG~ 467 (556)
+| |++|||||+|||++ .+++++.|.+||+++++||+|.+. .+ ++..+|.++|++|++++||+
T Consensus 265 ~~------t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGl 338 (438)
T PRK13512 265 FE------TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGV 338 (438)
T ss_pred cc------cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecC
Confidence 99 78999999999985 246899999999999999998653 23 56788999999999999999
Q ss_pred CHHHHHHhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCC-chHHHHHHHHh
Q 008714 468 TEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLADV 538 (556)
Q Consensus 468 te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~-~~~~~~~l~~~ 538 (556)
||+||++. + +.+...++....+.. .+++.||+||++|+ .+++|||+|++|+. +.++|+.++.+
T Consensus 339 te~~a~~~----~--~~~~~~~~~~~~~~~-~~~~~g~~klv~d~-~~~~ilGa~~~g~~~a~e~i~~~~~a 402 (438)
T PRK13512 339 KPNELKQF----D--YKMVEVTQGAHANYY-PGNSPLHLRVYYDT-SNRKILRAAAVGKEGADKRIDVLSMA 402 (438)
T ss_pred CHHHHccC----C--cEEEEEecCCcCCCc-CCCceEEEEEEEEC-CCCeEEEEEEEccccHHHHHHHHHHH
Confidence 99999752 3 555666666665544 67889999999998 68999999999997 77777766554
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=2.7e-48 Score=410.83 Aligned_cols=373 Identities=24% Similarity=0.310 Sum_probs=282.3
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CeEEEecCC-cCCccccccCC-CCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKG--LKTAIIEGD-VVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk~-~~GG~~~~~g~-ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+|||||||+||+++|..|++++ .+|+|||++ .++- ..| +|.. . ...+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~----~~~~~~~~----~---------------------~~~~ 52 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF----GACGLPYF----V---------------------GGFF 52 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee----ecCCCceE----e---------------------cccc
Confidence 6999999999999999999985 589999994 3221 001 1100 0 0000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEe--cCCEEEEcc---ceEEE--eCeEEEeCCCCCCCCCCCC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GPQKVKFGT---DNIVT--AKDIIIATGSVPFVPKGIE 250 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~v~~~~---~~~~~--~d~lViAtG~~p~~p~~~~ 250 (556)
+. ..++.....+.+++.|++++.+. +..+ +.+.|.+.+ +.++. ||+||||||++|..|+.++
T Consensus 53 ~~----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g 122 (444)
T PRK09564 53 DD----------PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKN 122 (444)
T ss_pred CC----------HHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCC
Confidence 00 01111122234556799987654 4333 456676643 45566 9999999999999887766
Q ss_pred CCCCeEecccc---cccC-----CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHh
Q 008714 251 VDGKTVITSDH---ALKL-----EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLI 321 (556)
Q Consensus 251 ~~~~~v~t~~~---~~~~-----~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~ 321 (556)
.+...+++... ...+ ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.++
T Consensus 123 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~ 202 (444)
T PRK09564 123 INLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELR 202 (444)
T ss_pred cCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHH
Confidence 65455554332 2222 134799999999999999999999999999999999998874 89999999999998
Q ss_pred CCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCC
Q 008714 322 NPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERM 400 (556)
Q Consensus 322 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l 400 (556)
+ .||++++++.+++++. ++....+.+ ++ .++++|.+++|+|+.||++.+ +..++.. ++|+|.||+++
T Consensus 203 ~-~gI~v~~~~~v~~i~~--~~~~~~v~~-~~------~~i~~d~vi~a~G~~p~~~~l--~~~gl~~~~~g~i~vd~~~ 270 (444)
T PRK09564 203 E-NGVELHLNEFVKSLIG--EDKVEGVVT-DK------GEYEADVVIVATGVKPNTEFL--EDTGLKTLKNGAIIVDEYG 270 (444)
T ss_pred H-CCCEEEcCCEEEEEec--CCcEEEEEe-CC------CEEEcCEEEECcCCCcCHHHH--HhcCccccCCCCEEECCCc
Confidence 7 8999999999999964 333333433 22 479999999999999998764 6667765 67999999999
Q ss_pred ccccCCCCcCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCccCCCCCcc-EEEecccceeEecCCH
Q 008714 401 RVIDANGNLVPHLYCIGDANGK----------MMLAHAASAQGISVVEQVTGRDHVLNHLSIP-AACFTHPEISMVGLTE 469 (556)
Q Consensus 401 ~~~~~~~t~~~~Vya~GD~~~~----------~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p-~~~~~~~~i~~vG~te 469 (556)
| |+.|||||+|||++. +++++.|.+||+++|+||+|.+..++....+ ...|++|++++||+||
T Consensus 271 ~------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~ 344 (444)
T PRK09564 271 E------TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTE 344 (444)
T ss_pred c------cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCH
Confidence 9 789999999999853 4689999999999999999977655544444 4569999999999999
Q ss_pred HHHHHhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCC-chHHHHHHHHh
Q 008714 470 PQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLADV 538 (556)
Q Consensus 470 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~-~~~~~~~l~~~ 538 (556)
+||++. |+++.+.++++ .+.++++.+.++||+||++|+ .+++|||+|++|++ +.++|+.++.+
T Consensus 345 ~~a~~~----g~~~~~~~~~~-~~~~~~~~~~~~~~~klv~~~-~~~~ilG~~~~g~~~~~~~i~~~~~~ 408 (444)
T PRK09564 345 EEAKKL----GIDYKTVFIKD-KNHTNYYPGQEDLYVKLIYEA-DTKVILGGQIIGKKGAVLRIDALAVA 408 (444)
T ss_pred HHHHHC----CCCeEEEEEec-CCCCCcCCCCceEEEEEEEEC-CCCeEEeEEEEcCccHHHHHHHHHHH
Confidence 999874 88888888765 466777788889999999998 57999999999997 76776665443
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=4e-42 Score=361.49 Aligned_cols=313 Identities=20% Similarity=0.277 Sum_probs=250.6
Q ss_pred HHHcCcEEEec-eEEEe--cCCEEEEcc---ceEEE--eCeEEEeCCCCCCCCCCCCCCCCeEecccccccC--------
Q 008714 202 MKALGVDILTG-VGTIL--GPQKVKFGT---DNIVT--AKDIIIATGSVPFVPKGIEVDGKTVITSDHALKL-------- 265 (556)
Q Consensus 202 ~~~~gv~~~~g-~~~~~--~~~~v~~~~---~~~~~--~d~lViAtG~~p~~p~~~~~~~~~v~t~~~~~~~-------- 265 (556)
+.+.|++++.+ .+..+ +.+.+.+.+ +.++. ||+||||||++|..|+.++.+...+++.......
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~ 133 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYID 133 (427)
T ss_pred HHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh
Confidence 35679998765 44433 356666542 34677 9999999999999887776554445544332211
Q ss_pred CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-CCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCC
Q 008714 266 EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-MPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGK 344 (556)
Q Consensus 266 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-l~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~ 344 (556)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.+ .+.+++++.+.+.+.+++ .||+++++..+++++.+ +.
T Consensus 134 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~--~~ 210 (427)
T TIGR03385 134 KNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKK-HEINLRLNEEVDSIEGE--ER 210 (427)
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHH-cCCEEEeCCEEEEEecC--CC
Confidence 135789999999999999999999999999999999987 466899999999999987 89999999999999753 32
Q ss_pred eEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecccCCC-
Q 008714 345 PVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK- 422 (556)
Q Consensus 345 ~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~- 422 (556)
+ +.+.+| +++++|.|++++|++|+++.+ +.+++.. ++|+|.||+++| |+.|+|||+|||++.
T Consensus 211 -~-v~~~~g------~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~~G~i~vd~~~~------t~~~~Vya~GD~~~~~ 274 (427)
T TIGR03385 211 -V-KVFTSG------GVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQ------TSVPNIYAAGDVAESH 274 (427)
T ss_pred -E-EEEcCC------CEEEeCEEEECCCccCCHHHH--HhcCcccCCCCCEEECCCcE------eCCCCEEEeeeeEEee
Confidence 2 455555 579999999999999998764 5566665 678999999999 789999999999852
Q ss_pred ---------CCcHHHHHHHHHHHHHHHhCCCccCC-CCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccc
Q 008714 423 ---------MMLAHAASAQGISVVEQVTGRDHVLN-HLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKA 492 (556)
Q Consensus 423 ---------~~~~~~A~~qg~~aa~~i~g~~~~~~-~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~ 492 (556)
+++++.|.+||+++|+||+|++..++ +..+|.++|++|++++||+||+||++. |+++.+..+++..
T Consensus 275 ~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~----g~~~~~~~~~~~~ 350 (427)
T TIGR03385 275 NIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKL----NIDYKTVFVKAKT 350 (427)
T ss_pred eccCCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHC----CCCeEEEEEecCC
Confidence 35899999999999999998765443 335788999999999999999999864 8899888877666
Q ss_pred cchhhhcCCcceEEEEEEcCCCCCccceEEEeCCC-chHHHHHHHHhh
Q 008714 493 NTKALAENEGEGLAKGVPRNFASSERTNQHSDRPS-KPNLVKKLADVY 539 (556)
Q Consensus 493 ~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~-~~~~~~~l~~~~ 539 (556)
..++. .+.++||+||++++ .+++|||+|++|+. +.++|+.++..-
T Consensus 351 ~~~~~-~~~~~g~~kli~~~-~~~~ilG~~~~g~~~a~e~i~~~~~ai 396 (427)
T TIGR03385 351 HANYY-PGNSPLHLKLIYEK-DTRRILGAQAVGKEGADKRIDVLAAAI 396 (427)
T ss_pred CCCcC-CCCceEEEEEEEEC-CCCeEEEEEEEccccHHHHHHHHHHHH
Confidence 55544 47778999999998 67999999999999 888877665543
No 38
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=8e-41 Score=371.61 Aligned_cols=361 Identities=18% Similarity=0.238 Sum_probs=269.1
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK----GLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~----g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
.+|||||+|+||+.+|.+|+++ +++|+||+++ .++ +..+..+..+ +
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~~L~~~~-------------------~------ 54 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRVHLSSYF-------------------S------ 54 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCCcchHhH-------------------c------
Confidence 4799999999999999999875 4789999983 321 0001000000 0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG 253 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~ 253 (556)
... .+.+......+++..||+++.+.. ..++ .+.|.+.++.++.||+||||||+.|++|++++.+.
T Consensus 55 ~~~-----------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~ 123 (847)
T PRK14989 55 HHT-----------AEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSET 123 (847)
T ss_pred CCC-----------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCC
Confidence 000 012222223455668999999864 3343 45677777888999999999999999998777665
Q ss_pred CeEe---cccccccC---CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCce
Q 008714 254 KTVI---TSDHALKL---EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKI 326 (556)
Q Consensus 254 ~~v~---t~~~~~~~---~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV 326 (556)
..++ +.+++..+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +|++..+.+.+.|++ .||
T Consensus 124 ~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~-~GV 202 (847)
T PRK14989 124 QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIES-MGV 202 (847)
T ss_pred CCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHH-CCC
Confidence 5444 44444333 245789999999999999999999999999999999999985 999999999999987 999
Q ss_pred EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccC
Q 008714 327 DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDA 405 (556)
Q Consensus 327 ~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~ 405 (556)
+++++..+++|..++++....+.+.+| +++++|.|++++|++||++++ +.+++.. ++|+|.||++||
T Consensus 203 ~v~~~~~v~~I~~~~~~~~~~v~~~dG------~~i~~D~Vv~A~G~rPn~~L~--~~~Gl~~~~~G~I~VD~~l~---- 270 (847)
T PRK14989 203 RVHTSKNTLEIVQEGVEARKTMRFADG------SELEVDFIVFSTGIRPQDKLA--TQCGLAVAPRGGIVINDSCQ---- 270 (847)
T ss_pred EEEcCCeEEEEEecCCCceEEEEECCC------CEEEcCEEEECCCcccCchHH--hhcCccCCCCCcEEECCCCc----
Confidence 999999999997643344556777776 689999999999999999853 5677765 678999999999
Q ss_pred CCCcCCCEEEecccCCC----CCcHHHHHHHHHHHHHHHhCCCccCCCCCcc-EEEecccceeEecCCHHHHHHhhhhcC
Q 008714 406 NGNLVPHLYCIGDANGK----MMLAHAASAQGISVVEQVTGRDHVLNHLSIP-AACFTHPEISMVGLTEPQAREKAEKEG 480 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~~----~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p-~~~~~~~~i~~vG~te~~a~~~~~~~~ 480 (556)
|+.|||||+|||+.. ..+++.|..||++||+||+|.+..++....+ ...+.+.+++++|... +
T Consensus 271 --Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~~~lk~~G~~v~s~G~~~----------~ 338 (847)
T PRK14989 271 --TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLSAKLKLLGVDVGGIGDAH----------G 338 (847)
T ss_pred --CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccceEEEECCcceEeccccc----------C
Confidence 789999999999865 3488999999999999999987766665555 3445667888888321 1
Q ss_pred ceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc--hHHHHHH
Q 008714 481 FEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK--PNLVKKL 535 (556)
Q Consensus 481 ~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~--~~~~~~l 535 (556)
.+.....+.| ......+|.||++++ .+++|+|++++|+.+ .++++.+
T Consensus 339 ~~~~~~~~~~-------~~~~~~~y~Klv~~~-~~~~LlGa~lvGd~~~~~~l~~~~ 387 (847)
T PRK14989 339 RTPGARSYVY-------LDESKEIYKRLIVSE-DNKTLLGAVLVGDTSDYGNLLQLV 387 (847)
T ss_pred CCCCceeEEE-------EcCCCCEEEEEEEEC-CCCEEEEEEEECCHHHHHHHHHHH
Confidence 1000000011 123346899999997 688999999999876 5555544
No 39
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=6e-38 Score=326.10 Aligned_cols=345 Identities=18% Similarity=0.157 Sum_probs=245.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCC--eEEEecCCc-CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGDV-VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk~~-~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
.+|||||||+||++||..|++.|. +|+||+++. +. +..+.-++.++.. . ..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~l~~~~~~~-----------------~-----~~ 57 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPPLSKSMLLE-----------------D-----SP 57 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCCCCHHHHCC-----------------C-----Cc
Confidence 579999999999999999999876 799999832 11 0000001111000 0 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEe--cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~--~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
+.. .+ ...+.+...+|+++.+.. ..+ +.+.|.+.++.++.||+||||||++|+.+++++..+..
T Consensus 58 ~~~-----------~~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~ 124 (396)
T PRK09754 58 QLQ-----------QV--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGER 124 (396)
T ss_pred ccc-----------cc--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCC
Confidence 000 00 001223457999998853 333 45678888888899999999999999887766555555
Q ss_pred Eecc---cccccCC---CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008714 256 VITS---DHALKLE---FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 256 v~t~---~~~~~~~---~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~ 328 (556)
+++. +++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++.+.+.+.+++ .||++
T Consensus 125 v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~GV~i 203 (396)
T PRK09754 125 CFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQ-AGVRI 203 (396)
T ss_pred EEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHH-CCCEE
Confidence 6653 4443332 24789999999999999999999999999999999999886 788888888888887 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t 408 (556)
++++.+++++. +..+.+++.+| +++++|.|++++|.+||+.++ +..++..+ |+|.||++|| |
T Consensus 204 ~~~~~V~~i~~---~~~~~v~l~~g------~~i~aD~Vv~a~G~~pn~~l~--~~~gl~~~-~gi~vd~~~~------t 265 (396)
T PRK09754 204 LLNNAIEHVVD---GEKVELTLQSG------ETLQADVVIYGIGISANDQLA--REANLDTA-NGIVIDEACR------T 265 (396)
T ss_pred EeCCeeEEEEc---CCEEEEEECCC------CEEECCEEEECCCCChhhHHH--HhcCCCcC-CCEEECCCCc------c
Confidence 99999999975 22355677766 579999999999999998754 45566555 4599999999 7
Q ss_pred cCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHHhCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhc
Q 008714 409 LVPHLYCIGDANGK---------MMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKE 479 (556)
Q Consensus 409 ~~~~Vya~GD~~~~---------~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~ 479 (556)
+.|||||+|||+.. +.+++.|..||++||+||+|.+.+++.....+..+.+..+.++|.+..+
T Consensus 266 s~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-------- 337 (396)
T PRK09754 266 CDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGD-------- 337 (396)
T ss_pred CCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeCCCCC--------
Confidence 89999999999842 2467899999999999999987654433333444556789999975421
Q ss_pred CceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc
Q 008714 480 GFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 528 (556)
Q Consensus 480 ~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~ 528 (556)
++. .. .. .+...|+.+.++. ++++|+.++|...
T Consensus 338 --~~~-~~----~~------~~~~~~~~~~~~~---~~l~g~~~~~~~~ 370 (396)
T PRK09754 338 --DWL-CR----GN------PETQKAIWFNLQN---GVLIGAVTLNQGR 370 (396)
T ss_pred --EEE-Ee----cC------CCCceEEEEEeeC---CEEEEEEEECCHH
Confidence 111 11 00 1222344444433 7899999999753
No 40
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=7.9e-37 Score=315.92 Aligned_cols=348 Identities=17% Similarity=0.230 Sum_probs=247.8
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|||||||+||+.+|..|+++ +.+|+||+++.. .. +..+..++.+. ....
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~--~~-y~~~~l~~~~~------------------------~~~~ 55 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG--DE-YNKPDLSHVFS------------------------QGQR 55 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC--CC-cCcCcCcHHHh------------------------CCCC
Confidence 5899999999999999999986 467999998320 00 00000000000 0001
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHcCcEEEece-EEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 180 RQGVADHANNLATKIRN-NLTNSMKALGVDILTGV-GTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~gv~~~~g~-~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
. +++.. ...+.+++.|++++.+. +..++ .+.|.+ ++.++.||+||||||+.|..|+.++.+.
T Consensus 56 ~-----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~-- 121 (377)
T PRK04965 56 A-----------DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGREL-- 121 (377)
T ss_pred H-----------HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCce--
Confidence 1 11111 12334566799998764 44333 456665 4568999999999999999887666433
Q ss_pred EecccccccC------CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008714 256 VITSDHALKL------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 256 v~t~~~~~~~------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~ 328 (556)
+++....... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. ++++..+.+++.+++ .||++
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-~gV~i 200 (377)
T PRK04965 122 MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTE-MGVHL 200 (377)
T ss_pred EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHh-CCCEE
Confidence 4443332211 134689999999999999999999999999999999998887 688899999999987 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGN 408 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t 408 (556)
++++.+++++.++ ....+.+.++ .++++|.||+|+|.+||+.++ +..++..++| |.||++|| |
T Consensus 201 ~~~~~v~~i~~~~--~~~~v~~~~g------~~i~~D~vI~a~G~~p~~~l~--~~~gl~~~~g-i~vd~~l~------t 263 (377)
T PRK04965 201 LLKSQLQGLEKTD--SGIRATLDSG------RSIEVDAVIAAAGLRPNTALA--RRAGLAVNRG-IVVDSYLQ------T 263 (377)
T ss_pred EECCeEEEEEccC--CEEEEEEcCC------cEEECCEEEECcCCCcchHHH--HHCCCCcCCC-EEECCCcc------c
Confidence 9999999998643 2355777666 689999999999999998754 4556666666 99999999 7
Q ss_pred cCCCEEEecccCCCC----CcHHHHHHHHHHHHHHHhCCCccCCCCCc-cEEEecccceeEecCCHHHHHHhhhhcCceE
Q 008714 409 LVPHLYCIGDANGKM----MLAHAASAQGISVVEQVTGRDHVLNHLSI-PAACFTHPEISMVGLTEPQAREKAEKEGFEV 483 (556)
Q Consensus 409 ~~~~Vya~GD~~~~~----~~~~~A~~qg~~aa~~i~g~~~~~~~~~~-p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~ 483 (556)
+.|||||+|||+..+ +.+..|..||+++|+||+|.+..+..... +...+...++.++|....+ ....
T Consensus 264 s~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~ 335 (377)
T PRK04965 264 SAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ--------DLRW 335 (377)
T ss_pred CCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC--------CceE
Confidence 899999999998542 35677999999999999998876654333 3344567789999976421 1111
Q ss_pred EEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHH
Q 008714 484 SVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNL 531 (556)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~ 531 (556)
.+ ..+.+++.+.++.++ ++++|+.++|..+...
T Consensus 336 ~~-------------~~~~~~~~~~~~~~~--~~l~g~~~~g~~~~~~ 368 (377)
T PRK04965 336 QI-------------NAESQGMVAKGVDEA--GQLRAFVVSEDRMKEA 368 (377)
T ss_pred EE-------------EeCCCCeEEEEEccC--CcEEEEEEEChhHHHH
Confidence 10 122345554444444 7999999999987553
No 41
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=9.5e-37 Score=339.82 Aligned_cols=347 Identities=19% Similarity=0.232 Sum_probs=254.7
Q ss_pred EEEECCChHHHHHHHHHHHc---CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 104 LIIIGAGVGGHGAALHAVEK---GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 104 VvIIGgG~aGl~aA~~l~~~---g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
|||||||+||+.+|.+|+++ +++|+|||+ +.++. ..+..+..+. | ..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y----~r~~L~~~l~------------------g------~~~ 52 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNY----NRILLSSVLQ------------------G------EAD 52 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCc----ccccccHHHC------------------C------CCC
Confidence 68999999999999999886 468999998 43221 0010000000 0 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEe--cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeE
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTV 256 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v 256 (556)
. +.+.....+++++.||+++.+. +..+ +.+.|.+.++.++.||+||||||+.|+.|++++.+...+
T Consensus 53 ~-----------~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v 121 (785)
T TIGR02374 53 L-----------DDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGV 121 (785)
T ss_pred H-----------HHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCE
Confidence 1 1111122334566899999885 4433 457788888889999999999999999988777654445
Q ss_pred ecc---cccccC---CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEEE
Q 008714 257 ITS---DHALKL---EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 257 ~t~---~~~~~~---~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~~ 329 (556)
++. +++..+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +|++..+.+.+.+++ .||+++
T Consensus 122 ~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~-~GV~v~ 200 (785)
T TIGR02374 122 YVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ-KGLTFL 200 (785)
T ss_pred EEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHH-cCCEEE
Confidence 433 333222 235689999999999999999999999999999999999876 899999999999987 899999
Q ss_pred cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCc
Q 008714 330 TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNL 409 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~ 409 (556)
++..++++..+ +....+++.|| +++++|+||+++|.+||++++ +..++..+ |.|.||++|| |+
T Consensus 201 ~~~~v~~i~~~--~~~~~v~~~dG------~~i~~D~Vi~a~G~~Pn~~la--~~~gl~~~-ggI~Vd~~~~------Ts 263 (785)
T TIGR02374 201 LEKDTVEIVGA--TKADRIRFKDG------SSLEADLIVMAAGIRPNDELA--VSAGIKVN-RGIIVNDSMQ------TS 263 (785)
T ss_pred eCCceEEEEcC--CceEEEEECCC------CEEEcCEEEECCCCCcCcHHH--HhcCCccC-CCEEECCCcc------cC
Confidence 99999998753 34456778877 689999999999999999854 44556555 5699999999 78
Q ss_pred CCCEEEecccCCC----CCcHHHHHHHHHHHHHHHhCCC-ccCCCCCcc-EEEecccceeEecCCHHHHHHhhhhcCceE
Q 008714 410 VPHLYCIGDANGK----MMLAHAASAQGISVVEQVTGRD-HVLNHLSIP-AACFTHPEISMVGLTEPQAREKAEKEGFEV 483 (556)
Q Consensus 410 ~~~Vya~GD~~~~----~~~~~~A~~qg~~aa~~i~g~~-~~~~~~~~p-~~~~~~~~i~~vG~te~~a~~~~~~~~~~~ 483 (556)
.|||||+|||+.. ..++..|..||+++|.||+|.+ .++.....+ ...+...+++++|...... +.
T Consensus 264 ~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~-------~~-- 334 (785)
T TIGR02374 264 DPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETE-------RT-- 334 (785)
T ss_pred CCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCC-------Cc--
Confidence 9999999999854 2467889999999999999987 554443333 2346678899999865321 11
Q ss_pred EEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc
Q 008714 484 SVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 528 (556)
Q Consensus 484 ~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~ 528 (556)
. ...|. ......+.|+++++ ++|+|++++|...
T Consensus 335 ~--~~~~~-------d~~~~~y~kl~~~~---~rLlGavlvgd~~ 367 (785)
T TIGR02374 335 T--SIKIY-------DEQKGIYKKLVLSD---DKLLGAVLFGDTS 367 (785)
T ss_pred E--EEEEE-------cCCCCEEEEEEEEC---CEEEEEEEECCHH
Confidence 1 11111 12334688999986 4799999999754
No 42
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.6e-35 Score=298.13 Aligned_cols=295 Identities=18% Similarity=0.218 Sum_probs=214.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+..+||+||||||||++||..|+++|+++++||+..+||.|.....+ +.++......
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~-----------------------~~~~~~~~~~ 60 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEV-----------------------ENWPGDPNDL 60 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceE-----------------------CCCCCCCCCC
Confidence 34589999999999999999999999999999987788887533211 0111111112
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe--cCC--EEEEccceEEEeCeEEEeCCCCCCCCCCCCC---
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVPKGIEV--- 251 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~--- 251 (556)
+.+ .+..++.+.....++++..+....+ ... .+.... .++.||+||+|||+.|+.|+.++.
T Consensus 61 ~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~~~~~i~g~~~~ 128 (321)
T PRK10262 61 TGP-----------LLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDS-GEYTCDALIIATGASARYLGLPSEEAF 128 (321)
T ss_pred CHH-----------HHHHHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecC-CEEEECEEEECCCCCCCCCCCCCHHHc
Confidence 222 2233444455556677766554322 222 333322 468999999999999988766553
Q ss_pred CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
.+..++.+.........+++++|||+|++|+|+|..|++.+.+||++++.+.+. .++.+.+.+++.+++ .||+++++
T Consensus 129 ~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~-~gV~i~~~ 205 (321)
T PRK10262 129 KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVEN-GNIILHTN 205 (321)
T ss_pred CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccC-CCeEEEeC
Confidence 344555555444445678999999999999999999999999999999988653 356777888888876 89999999
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCC-----CCccccCC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDE-----RMRVIDAN 406 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~-----~l~~~~~~ 406 (556)
+.+++++.+ ++....+++.++...++.+++++|.|++++|++||..++. .++..++|+|.||+ +++
T Consensus 206 ~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~---~~l~~~~g~i~vd~~~~~~~~~----- 276 (321)
T PRK10262 206 RTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE---GQLELENGYIKVQSGIHGNATQ----- 276 (321)
T ss_pred CEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhh---ccccccCCEEEECCCCcccccc-----
Confidence 999999864 2334456666542222335799999999999999998653 23445679999998 556
Q ss_pred CCcCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 407 GNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 407 ~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
|++|||||+|||++. +.....|+.+|..||..|.
T Consensus 277 -t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 277 -TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred -cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHH
Confidence 899999999999965 4567779999999998875
No 43
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=7.9e-35 Score=292.10 Aligned_cols=288 Identities=26% Similarity=0.330 Sum_probs=209.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
|||+|||||+||+++|..|+++|++|+|||+..+||.|.....+. .+ .+++. ....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~------------------~~--~~~~~---~~~~- 56 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVE------------------NY--PGFPE---GISG- 56 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeeccccc------------------cc--CCCCC---CCCh-
Confidence 699999999999999999999999999999976888775322110 00 00000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecC----CEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC---CC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP----QKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD---GK 254 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~----~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~---~~ 254 (556)
.++..++.+.+++.+++++...+..++. +.+.+.++.++.||+||+|||+.|..|+.++.+ +.
T Consensus 57 ----------~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~ 126 (300)
T TIGR01292 57 ----------PELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGR 126 (300)
T ss_pred ----------HHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCc
Confidence 2334455566777899998865554332 356666667899999999999998866554432 33
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
.++.+.........+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. ++ .+.+.+++..||++++++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~--~~----~~~~~l~~~~gv~~~~~~~v 200 (300)
T TIGR01292 127 GVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA--EK----ILLDRLRKNPNIEFLWNSTV 200 (300)
T ss_pred cEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc--CH----HHHHHHHhCCCeEEEeccEE
Confidence 3443332222234578999999999999999999999999999999876532 33 34455555239999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCE
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHL 413 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~V 413 (556)
++++.+ ++...+++.+.. .++..++++|.+++|+|++|+.+.+. .. +.. ++|++.||++++ |++|||
T Consensus 201 ~~i~~~--~~~~~v~~~~~~-~g~~~~i~~D~vi~a~G~~~~~~~l~--~~-~~~~~~g~i~v~~~~~------t~~~~v 268 (300)
T TIGR01292 201 KEIVGD--NKVEGVKIKNTV-TGEEEELKVDGVFIAIGHEPNTELLK--GL-LELDEGGYIVTDEGMR------TSVPGV 268 (300)
T ss_pred EEEEcc--CcEEEEEEEecC-CCceEEEEccEEEEeeCCCCChHHHH--Hh-heecCCCcEEECCCCc------cCCCCE
Confidence 999864 244445554321 12236799999999999999987653 22 333 678999999998 789999
Q ss_pred EEecccCC-CCCcHHHHHHHHHHHHHHHh
Q 008714 414 YCIGDANG-KMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 414 ya~GD~~~-~~~~~~~A~~qg~~aa~~i~ 441 (556)
|++|||++ .++.+..|+.||+.||.+|.
T Consensus 269 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 269 FAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred EEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 99999998 67889999999999999986
No 44
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=3.8e-35 Score=294.83 Aligned_cols=283 Identities=23% Similarity=0.287 Sum_probs=216.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcC--CeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+.+|||||||++|+.+|.+|.+.- .+|++||+... .+-+++++. ......
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~---------hl~~plL~e-------------------va~g~l 54 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY---------HLFTPLLYE-------------------VATGTL 54 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc---------cccchhhhh-------------------hhcCCC
Confidence 368999999999999999999974 89999999320 011111110 001112
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC-cEEEeceEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCC--
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALG-VDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDG-- 253 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~~~~g~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~-- 253 (556)
+. +++...+...++..+ |+++.++++.+| .++|.+.++.++.||+||+|+|+.+..++.++...
T Consensus 55 ~~-----------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a 123 (405)
T COG1252 55 SE-----------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYA 123 (405)
T ss_pred Ch-----------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhC
Confidence 22 233334445555444 999999988665 67899988778999999999999998887666432
Q ss_pred CeEecccccccC-----------CCCC-----CeEEEEcCchhHHHHHHHHHhCC-------------CeEEEEEeCCCC
Q 008714 254 KTVITSDHALKL-----------EFVP-----DWIAIVGSGYIGLEFSDVYTALG-------------SEVTFIEALDQL 304 (556)
Q Consensus 254 ~~v~t~~~~~~~-----------~~~~-----~~v~VvG~G~~g~e~A~~l~~~g-------------~~Vtli~~~~~l 304 (556)
..+-+.+++.++ ...+ -+++|+|||++|+|+|.+|.++- .+|+++++++++
T Consensus 124 ~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 124 FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 233445544322 1122 27999999999999998876542 389999999999
Q ss_pred CCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcc
Q 008714 305 MPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLEN 384 (556)
Q Consensus 305 l~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 384 (556)
||.|++++++.+++.|++ .||++++++.|++++++. |++.+++ .+|++|++||++|.+++...-++
T Consensus 204 Lp~~~~~l~~~a~~~L~~-~GV~v~l~~~Vt~v~~~~------v~~~~g~-----~~I~~~tvvWaaGv~a~~~~~~l-- 269 (405)
T COG1252 204 LPMFPPKLSKYAERALEK-LGVEVLLGTPVTEVTPDG------VTLKDGE-----EEIPADTVVWAAGVRASPLLKDL-- 269 (405)
T ss_pred ccCCCHHHHHHHHHHHHH-CCCEEEcCCceEEECCCc------EEEccCC-----eeEecCEEEEcCCCcCChhhhhc--
Confidence 999999999999999998 999999999999998742 7777761 26999999999999998763222
Q ss_pred ccccc-CCCceeeCCCCccccCCCCcCCCEEEecccCC------CCCcHHHHHHHHHHHHHHHh
Q 008714 385 INVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANG------KMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 385 ~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~------~~~~~~~A~~qg~~aa~~i~ 441 (556)
.+++. .+|++.||++||+ +++|+|||+|||+. .|+.++.|++||+++|+||.
T Consensus 270 ~~~e~dr~Grl~V~~~L~~-----~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~ 328 (405)
T COG1252 270 SGLETDRRGRLVVNPTLQV-----PGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIK 328 (405)
T ss_pred ChhhhccCCCEEeCCCccc-----CCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 34554 5799999999998 89999999999973 26899999999999999997
No 45
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1e-34 Score=303.97 Aligned_cols=282 Identities=21% Similarity=0.285 Sum_probs=209.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
+.+|||||||+||+.+|.+|.+.+.+|+|||+... ..+.+++| .. .....+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~---~~~~~~l~---------------------~~----~~g~~~~ 61 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH---MLFTPLLP---------------------QT----TTGTLEF 61 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC---cchhhhHH---------------------Hh----cccCCCh
Confidence 46899999999999999999877899999998320 00000000 00 0001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEE----------ccceEEEeCeEEEeCCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKF----------GTDNIVTAKDIIIATGSVPFVPKG 248 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~----------~~~~~~~~d~lViAtG~~p~~p~~ 248 (556)
+.+...+...++..+++++.+.+..++ .+.|.+ .++.++.||+||||||+.|..|+.
T Consensus 62 -----------~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~i 130 (424)
T PTZ00318 62 -----------RSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNI 130 (424)
T ss_pred -----------HHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCC
Confidence 122223344455678999999887654 566766 456689999999999999887765
Q ss_pred CCCCCC--eEecccccccC--------------------CCCCCeEEEEcCchhHHHHHHHHHh--------------CC
Q 008714 249 IEVDGK--TVITSDHALKL--------------------EFVPDWIAIVGSGYIGLEFSDVYTA--------------LG 292 (556)
Q Consensus 249 ~~~~~~--~v~t~~~~~~~--------------------~~~~~~v~VvG~G~~g~e~A~~l~~--------------~g 292 (556)
++.... .+.+.+++..+ ....++++|||+|++|+|+|..|.. .+
T Consensus 131 pG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~ 210 (424)
T PTZ00318 131 PGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEE 210 (424)
T ss_pred CCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 554321 11122221110 0112489999999999999998875 37
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC
Q 008714 293 SEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG 372 (556)
Q Consensus 293 ~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G 372 (556)
.+|+++++++++++.+++++.+.+++.|++ .||++++++.++++..+ .+.+.+| +++++|.+||++|
T Consensus 211 ~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~-~gV~v~~~~~v~~v~~~------~v~~~~g------~~i~~d~vi~~~G 277 (424)
T PTZ00318 211 CKVTVLEAGSEVLGSFDQALRKYGQRRLRR-LGVDIRTKTAVKEVLDK------EVVLKDG------EVIPTGLVVWSTG 277 (424)
T ss_pred CEEEEEcCCCcccccCCHHHHHHHHHHHHH-CCCEEEeCCeEEEEeCC------EEEECCC------CEEEccEEEEccC
Confidence 899999999999999999999999999987 99999999999998742 3667776 6899999999999
Q ss_pred CCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecccCCC-----CCcHHHHHHHHHHHHHHHhC
Q 008714 373 RAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-----MMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 373 ~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~-----~~~~~~A~~qg~~aa~~i~g 442 (556)
.+|+. .+ +.+++.. ++|+|.||++||+ +++|||||+|||+.. |+++..|++||+++|+||.+
T Consensus 278 ~~~~~-~~--~~~~l~~~~~G~I~Vd~~l~~-----~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 278 VGPGP-LT--KQLKVDKTSRGRISVDDHLRV-----KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCCcc-hh--hhcCCcccCCCcEEeCCCccc-----CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 99985 22 4445554 6799999999997 789999999999863 67899999999999999974
No 46
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=2.6e-34 Score=302.46 Aligned_cols=282 Identities=18% Similarity=0.235 Sum_probs=206.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..++|+|||||+||+++|..|++.|++|+|||+ +.+||.+.+. +|.. ..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g--ip~~----------------------------~~ 181 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG--IPEF----------------------------RL 181 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec--CCCc----------------------------cC
Confidence 458999999999999999999999999999999 6788876421 1210 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCC-CCCCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS-VPFVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~-~p~~p~~~~~~~~~v~ 257 (556)
+ .++.....+.+++.||+++.+... .+.+.+.+. ...||+||||||+ .|+.|++++.+...++
T Consensus 182 ~------------~~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~ 245 (449)
T TIGR01316 182 P------------KEIVVTEIKTLKKLGVTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVY 245 (449)
T ss_pred C------------HHHHHHHHHHHHhCCcEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcE
Confidence 1 111122233456679999988643 234444332 3579999999998 6887776665555566
Q ss_pred cccccccC---------------CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-CCCCCHHHHHHHHHHHh
Q 008714 258 TSDHALKL---------------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-MPGFDPEIGKLAQRVLI 321 (556)
Q Consensus 258 t~~~~~~~---------------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-l~~~d~~~~~~~~~~l~ 321 (556)
+..+++.. ...+++|+|||+|++|+|+|..+.++|.+||+++++++. ++.. ....+.++
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-----~~~~~~l~ 320 (449)
T TIGR01316 246 SANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-----VEEIAHAE 320 (449)
T ss_pred EHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC-----HHHHHHHH
Confidence 55443210 124689999999999999999999999999999988652 2221 11223455
Q ss_pred CCCceEEEcCceEEEEEecCCCCeEEEEEe---------cCC-----CCCCCceEecCEEEEeeCCCCCCCCCCCccccc
Q 008714 322 NPRKIDYHTGVFATKITPAKDGKPVTIELI---------DAK-----TKEPKDTLEVDAALIATGRAPFTNGLGLENINV 387 (556)
Q Consensus 322 ~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---------~g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~ 387 (556)
+ .||++++++.++++..+++++...+++. +|. ..++..++++|.||+++|+.||+.++ +..++
T Consensus 321 ~-~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l--~~~gl 397 (449)
T TIGR01316 321 E-EGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMA--ETTRL 397 (449)
T ss_pred h-CCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhh--hccCc
Confidence 5 7999999999999987545555455553 110 01223479999999999999998654 45566
Q ss_pred cc-CCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 388 VT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 388 ~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
.. ++|+|.||+++| |+.|+|||+|||+.++.++..|+.||+.||.+|.
T Consensus 398 ~~~~~G~i~vd~~~~------Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 398 KTSERGTIVVDEDQR------TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred ccCCCCeEEeCCCCc------cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 65 678999999999 7899999999999888899999999999999985
No 47
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=277.56 Aligned_cols=287 Identities=26% Similarity=0.342 Sum_probs=218.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCe-EEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLK-TAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~-V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+.|||+|||||||||+||.++++.+++ ++|+|+..+||......-++ . .+|++. ..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~ve------------------n--ypg~~~---~~ 58 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVE------------------N--YPGFPG---GI 58 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeec------------------C--CCCCcc---CC
Confidence 458999999999999999999999999 88888888886433211000 0 011111 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCEEEEccceEEEeCeEEEeCCCCCCCCCCC---CC
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFVPKGI---EV 251 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~---~~ 251 (556)
. ..++.+.+.+.....++++....+...+ .+.|.++++. +++++||||||..++.|..+ ++
T Consensus 59 ~-----------g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~ 126 (305)
T COG0492 59 L-----------GPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEF 126 (305)
T ss_pred c-----------hHHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhh
Confidence 1 2445555666677789999886655332 4577777765 99999999999987766433 57
Q ss_pred CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcC
Q 008714 252 DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 252 ~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
.|+.++.+-.+.. .+.+++|+|||||++|+|.|..|.+.+.+||+++|++.+-+ .+ .+.+.+.+..+|+++.+
T Consensus 127 ~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~~----~~~~~l~~~~~i~~~~~ 199 (305)
T COG0492 127 EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--EE----ILVERLKKNVKIEVLTN 199 (305)
T ss_pred cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--CH----HHHHHHHhcCCeEEEeC
Confidence 7888888877777 67788999999999999999999999999999999998754 33 34444444248999999
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVP 411 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~ 411 (556)
+.+.++.+++ ...+.+++.. ++..++.+|-+++++|..|+++++ ...++..++|+|.||+.++ ||+|
T Consensus 200 ~~i~ei~G~~---v~~v~l~~~~--~~~~~~~~~gvf~~iG~~p~~~~~--~~~~~~~~~g~I~v~~~~~------Tsvp 266 (305)
T COG0492 200 TVVKEILGDD---VEGVVLKNVK--GEEKELPVDGVFIAIGHLPNTELL--KGLGVLDENGYIVVDEEME------TSVP 266 (305)
T ss_pred CceeEEecCc---cceEEEEecC--CceEEEEeceEEEecCCCCchHHH--hhccccCCCCcEEcCCCcc------cCCC
Confidence 9999998753 3457777643 334689999999999999999765 3333445899999999998 8999
Q ss_pred CEEEecccCCCCC-cHHHHHHHHHHHHHHHh
Q 008714 412 HLYCIGDANGKMM-LAHAASAQGISVVEQVT 441 (556)
Q Consensus 412 ~Vya~GD~~~~~~-~~~~A~~qg~~aa~~i~ 441 (556)
+|||+||++..+. ++..|..+|.+||.++.
T Consensus 267 GifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 267 GIFAAGDVADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred CEEEeEeeccCcccEEeehhhhHHHHHHHHH
Confidence 9999999997754 78889999999988764
No 48
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=3.7e-34 Score=306.44 Aligned_cols=291 Identities=24% Similarity=0.311 Sum_probs=212.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...|||+||||||||++||..|++.|++|+|||. .+||+|.....++ . ..++ +..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~-~~GG~~~~~~~~~------------------~--~~~~----~~~ 264 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTVGIE------------------N--LISV----PYT 264 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec-CCCCccccCcCcc------------------c--cccc----CCC
Confidence 4469999999999999999999999999999985 6888875321110 0 0000 001
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceE-EEe--c--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC--
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVG-TIL--G--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV-- 251 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~--~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~-- 251 (556)
.. .++...+.+.++..|++++.+.. ..+ + .+.+.+.++..+.||+||+|||+.|+.|+.++.
T Consensus 265 ~~-----------~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~ 333 (515)
T TIGR03140 265 TG-----------SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKE 333 (515)
T ss_pred CH-----------HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHH
Confidence 11 23444555666677999988653 222 2 245666667789999999999999877765542
Q ss_pred -CCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEc
Q 008714 252 -DGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (556)
Q Consensus 252 -~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~ 330 (556)
.+..++.+.........+++|+|||+|++|+|+|..|++.+.+||++++.+.+.. ...+.+.+++..||++++
T Consensus 334 ~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~~ 407 (515)
T TIGR03140 334 YIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDILT 407 (515)
T ss_pred cCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEEE
Confidence 2334444333322234579999999999999999999999999999998887643 234556665436999999
Q ss_pred CceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCc
Q 008714 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409 (556)
Q Consensus 331 ~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~ 409 (556)
++.++++..+ +++...+++.++.. ++.+++++|.|++++|++||++++. .. +.. ++|+|.||+++| |+
T Consensus 408 ~~~v~~i~~~-~~~v~~v~~~~~~~-~~~~~i~~D~vi~a~G~~Pn~~~l~--~~-~~~~~~G~I~vd~~~~------Ts 476 (515)
T TIGR03140 408 SAQTTEIVGD-GDKVTGIRYQDRNS-GEEKQLDLDGVFVQIGLVPNTEWLK--DA-VELNRRGEIVIDERGR------TS 476 (515)
T ss_pred CCeeEEEEcC-CCEEEEEEEEECCC-CcEEEEEcCEEEEEeCCcCCchHHh--hh-cccCCCCeEEECCCCC------CC
Confidence 9999999764 34444577765422 2235799999999999999998764 22 444 679999999999 78
Q ss_pred CCCEEEecccCCCC-CcHHHHHHHHHHHHHHHhC
Q 008714 410 VPHLYCIGDANGKM-MLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 410 ~~~Vya~GD~~~~~-~~~~~A~~qg~~aa~~i~g 442 (556)
+|||||+|||++.+ .+...|+.+|..||.+|..
T Consensus 477 ~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 477 VPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 99999999999864 5778899999999998864
No 49
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1e-33 Score=298.35 Aligned_cols=286 Identities=19% Similarity=0.224 Sum_probs=207.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
....||+||||||||++||..|+++|++|+|+|+ +.+||.+.+. +|...
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--ip~~~---------------------------- 187 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG--IPEFR---------------------------- 187 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec--CCCcc----------------------------
Confidence 3568999999999999999999999999999999 7789877421 22100
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccc-eEEEeCeEEEeCCC-CCCCCCCCCCCCCe
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTD-NIVTAKDIIIATGS-VPFVPKGIEVDGKT 255 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~-~~~~~d~lViAtG~-~p~~p~~~~~~~~~ 255 (556)
... +++.....+.++..||+++.+... ...+.+.+. ..+.||+||||||+ .|+.+++++.+...
T Consensus 188 l~~-----------~~~~~~~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~g 253 (464)
T PRK12831 188 LPK-----------ETVVKKEIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNG 253 (464)
T ss_pred CCc-----------cHHHHHHHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcC
Confidence 000 112222334566689999988743 123333332 34679999999998 58877777766556
Q ss_pred EecccccccC--------------CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-CCCCCCHHHHHHHHHHH
Q 008714 256 VITSDHALKL--------------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDPEIGKLAQRVL 320 (556)
Q Consensus 256 v~t~~~~~~~--------------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-ll~~~d~~~~~~~~~~l 320 (556)
+++..+++.. ...+++|+|||+|++|+|+|..+.++|.+||++++.+. -++....++ . .+
T Consensus 254 V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~----~-~a 328 (464)
T PRK12831 254 VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV----H-HA 328 (464)
T ss_pred cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH----H-HH
Confidence 7766554321 24579999999999999999999999999999998763 344322222 2 23
Q ss_pred hCCCceEEEcCceEEEEEecCCCCeEEEEEe---------cCCC-----CCCCceEecCEEEEeeCCCCCCCCCCCcccc
Q 008714 321 INPRKIDYHTGVFATKITPAKDGKPVTIELI---------DAKT-----KEPKDTLEVDAALIATGRAPFTNGLGLENIN 386 (556)
Q Consensus 321 ~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---------~g~~-----~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 386 (556)
++ .||++++++.+.++..+++++...+++. +|.. .+++.++++|.||+++|+.|++.++. ...+
T Consensus 329 ~~-eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~-~~~g 406 (464)
T PRK12831 329 KE-EGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISS-TTKG 406 (464)
T ss_pred HH-cCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhc-ccCC
Confidence 34 7999999999999987555554444442 1110 12234799999999999999987552 2245
Q ss_pred ccc-CCCceeeCCC-CccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 387 VVT-QRGFVPVDER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 387 ~~~-~~G~i~vd~~-l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
+.. ++|+|.||++ ++ |+.|+|||+|||+.++.+...|+.+|+.||.+|.
T Consensus 407 l~~~~~G~i~vd~~~~~------Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 407 LKINKRGCIVADEETGL------TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred ceECCCCcEEECCCCCc------cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 555 6789999998 88 7999999999999888899999999999999985
No 50
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=3.1e-33 Score=301.46 Aligned_cols=288 Identities=23% Similarity=0.244 Sum_probs=204.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..|||+||||||||++||..|++.|++|+|||++.+||.|....++... .++ ....
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~--------------------pg~----~~~~ 58 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNY--------------------PGI----LNTT 58 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccC--------------------CCC----cCCC
Confidence 3599999999999999999999999999999998899988644322100 000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--C--CEEEEccceEEEeCeEEEeCCCCCCCCCCCCC---C
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--P--QKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV---D 252 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~--~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~---~ 252 (556)
. ..+..++...++..|++++.+.+..++ . +.|.+.++ ++.+++||||||+.|+.|+.++. .
T Consensus 59 ~-----------~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~ 126 (555)
T TIGR03143 59 G-----------PELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFT 126 (555)
T ss_pred H-----------HHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhC
Confidence 1 233344455666679998876655433 2 34555444 68999999999999988876553 2
Q ss_pred CCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCc
Q 008714 253 GKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGV 332 (556)
Q Consensus 253 ~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~ 332 (556)
+..++.+..+......+++++|||+|++|+|+|..|.++|.+|+++++.+.+.. +... ..+.+.+ .||++++++
T Consensus 127 ~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~-~gV~i~~~~ 200 (555)
T TIGR03143 127 GRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNH-PKIEVKFNT 200 (555)
T ss_pred CceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhC-CCcEEEeCC
Confidence 444544433333334689999999999999999999999999999999887532 2332 2333333 799999999
Q ss_pred eEEEEEecCCCCeEEEEEecCCCCCCCce--EecCE----EEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccC
Q 008714 333 FATKITPAKDGKPVTIELIDAKTKEPKDT--LEVDA----ALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDA 405 (556)
Q Consensus 333 ~v~~i~~~~~g~~~~v~~~~g~~~~~~~~--i~~D~----vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~ 405 (556)
.++++..+ +....+.+.+.. +++..+ +++|. |++++|++||+.++.. ++.. ++|+|.||+++|
T Consensus 201 ~V~~i~~~--~~v~~v~~~~~~-~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~---~l~l~~~G~I~vd~~~~---- 270 (555)
T TIGR03143 201 ELKEATGD--DGLRYAKFVNNV-TGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG---VVELDKRGYIPTNEDME---- 270 (555)
T ss_pred EEEEEEcC--CcEEEEEEEECC-CCCEEEEeccccccceEEEEEeCCCCChhHHhh---hcccCCCCeEEeCCccc----
Confidence 99999753 322223332210 011123 33676 9999999999986532 3444 579999999999
Q ss_pred CCCcCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHh
Q 008714 406 NGNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~ 441 (556)
|++|||||+|||+.. +..+..|..||++||.+|.
T Consensus 271 --Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 271 --TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred --cCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 789999999999753 4567889999999999985
No 51
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=4.8e-33 Score=298.27 Aligned_cols=290 Identities=24% Similarity=0.306 Sum_probs=215.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...|||+||||||||++||..|+++|++|+||++ .+||+|.....++. + .++ +..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~-~~GG~~~~~~~~~~------------------~--~~~----~~~ 263 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE-RFGGQVLDTMGIEN------------------F--ISV----PET 263 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec-CCCCeeeccCcccc------------------c--CCC----CCC
Confidence 3469999999999999999999999999999986 48998852211110 0 000 111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece-EEEe----cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCC---
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV-GTIL----GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIE--- 250 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~----~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~--- 250 (556)
.+ .++...+...+++.+++++.+. +..+ +.+.|.+.++.++.||.||+|||+.|+.|+.++
T Consensus 264 ~~-----------~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~ 332 (517)
T PRK15317 264 EG-----------PKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDE 332 (517)
T ss_pred CH-----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHH
Confidence 22 3445566667777899988764 3332 245666677778999999999999987765443
Q ss_pred CCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEc
Q 008714 251 VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHT 330 (556)
Q Consensus 251 ~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~ 330 (556)
+.+..++.+.........+++|+|||+|++|+|+|..|+..+.+||++++.+.+.. + +.+.+.+.+..||++++
T Consensus 333 ~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gI~i~~ 406 (517)
T PRK15317 333 YRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLRSLPNVTIIT 406 (517)
T ss_pred hcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHhcCCCcEEEE
Confidence 33445554443333345679999999999999999999999999999999887643 2 33455555436999999
Q ss_pred CceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCCCc
Q 008714 331 GVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANGNL 409 (556)
Q Consensus 331 ~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~ 409 (556)
++.+.++..+ +++...+++.++.. ++..++++|.|++++|++||++++.. . +.. ++|+|.||+++| |+
T Consensus 407 ~~~v~~i~~~-~g~v~~v~~~~~~~-g~~~~i~~D~v~~~~G~~p~~~~l~~--~-v~~~~~g~i~vd~~l~------Ts 475 (517)
T PRK15317 407 NAQTTEVTGD-GDKVTGLTYKDRTT-GEEHHLELEGVFVQIGLVPNTEWLKG--T-VELNRRGEIIVDARGA------TS 475 (517)
T ss_pred CcEEEEEEcC-CCcEEEEEEEECCC-CcEEEEEcCEEEEeECCccCchHHhh--h-eeeCCCCcEEECcCCC------CC
Confidence 9999999864 34545567765422 22357999999999999999987642 2 444 679999999999 79
Q ss_pred CCCEEEecccCCCC-CcHHHHHHHHHHHHHHHh
Q 008714 410 VPHLYCIGDANGKM-MLAHAASAQGISVVEQVT 441 (556)
Q Consensus 410 ~~~Vya~GD~~~~~-~~~~~A~~qg~~aa~~i~ 441 (556)
+|||||+|||++.+ .....|+.+|..||.++.
T Consensus 476 ~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 476 VPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAF 508 (517)
T ss_pred CCCEEECccccCCCCCEEEEhhhhHHHHHHHHH
Confidence 99999999998764 678899999999998875
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=6.9e-32 Score=297.77 Aligned_cols=282 Identities=20% Similarity=0.247 Sum_probs=201.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
....+|+||||||||++||..|+++|++|+|||+ +.+||.+.+. +|...+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~--IP~~Rl--------------------------- 587 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI--IPQFRI--------------------------- 587 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee--cccccc---------------------------
Confidence 3457999999999999999999999999999999 7889876531 332110
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCC-CCCCCCCCCCeE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPF-VPKGIEVDGKTV 256 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~-~p~~~~~~~~~v 256 (556)
. .++.....+.+...||+++.+... .+.+.+.....||+||||||+++. .++.++.+ ..+
T Consensus 588 -p------------~evL~~die~l~~~GVe~~~gt~V-----di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV 648 (1019)
T PRK09853 588 -P------------AELIQHDIEFVKAHGVKFEFGCSP-----DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNV 648 (1019)
T ss_pred -c------------HHHHHHHHHHHHHcCCEEEeCcee-----EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCc
Confidence 0 111122234556679999988754 233334445679999999999843 33433322 234
Q ss_pred eccccccc-------CCCCCCeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCC-CCCCCCCHHHHHHHHHHHhCCCce
Q 008714 257 ITSDHALK-------LEFVPDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALD-QLMPGFDPEIGKLAQRVLINPRKI 326 (556)
Q Consensus 257 ~t~~~~~~-------~~~~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~-~ll~~~d~~~~~~~~~~l~~~~gV 326 (556)
++..+++. ....+++|+|||||++|+|+|..+.+.+ .+|+++.|++ ..+|..++++ .+.+ + .||
T Consensus 649 ~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEl----e~Al-e-eGV 722 (1019)
T PRK09853 649 IKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEY----EEAL-E-DGV 722 (1019)
T ss_pred eehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHH----HHHH-H-cCC
Confidence 44332221 1245799999999999999999988874 4899999876 4666655544 3333 3 689
Q ss_pred EEEcCceEEEEEecCCCCeEE--EEEe----cCC----CCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCcee
Q 008714 327 DYHTGVFATKITPAKDGKPVT--IELI----DAK----TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVP 395 (556)
Q Consensus 327 ~~~~~~~v~~i~~~~~g~~~~--v~~~----~g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~ 395 (556)
+++.+..+.++.. +++... +.+. +|. ..+++.++++|.||+|+|..|+++++ +..++.. ++|+|.
T Consensus 723 e~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntell--e~~GL~ld~~G~I~ 798 (1019)
T PRK09853 723 EFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELL--KANGIPLDKKGWPV 798 (1019)
T ss_pred EEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHH--HhcCccccCCCCEE
Confidence 9999998988864 232111 1111 110 01233689999999999999999865 4556654 679999
Q ss_pred eCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 008714 396 VDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD 444 (556)
Q Consensus 396 vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~ 444 (556)
||++++ |+.|||||+|||+..|.++..|+.||+.||++|++..
T Consensus 799 VDetlq------Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 799 VDANGE------TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred eCCCcc------cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 999999 7899999999999888999999999999999998644
No 53
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=6.5e-32 Score=301.47 Aligned_cols=285 Identities=21% Similarity=0.259 Sum_probs=207.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
...++|+||||||||++||..|+++|++|+|||+ +.+||...+ .+|.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~------------------------------ 476 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY--GIPE------------------------------ 476 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCC------------------------------
Confidence 3467999999999999999999999999999999 778887542 1221
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCC-CCCCCCCCCCCCCeE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS-VPFVPKGIEVDGKTV 256 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~-~p~~p~~~~~~~~~v 256 (556)
+..+ ..+.....+.+++.||+++.+... .+.+.+.+.....||+||||||+ .|+.+++++.+...+
T Consensus 477 ~rlp----------~~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV 543 (752)
T PRK12778 477 FRLP----------KKIVDVEIENLKKLGVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGV 543 (752)
T ss_pred CCCC----------HHHHHHHHHHHHHCCCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCc
Confidence 1100 011122233456679999987643 23444444445679999999999 488777766655566
Q ss_pred ecccccccC--------------CCCCCeEEEEcCchhHHHHHHHHHhCCCe-EEEEEeCCC-CCCCCCHHHHHHHHHHH
Q 008714 257 ITSDHALKL--------------EFVPDWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQ-LMPGFDPEIGKLAQRVL 320 (556)
Q Consensus 257 ~t~~~~~~~--------------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~-Vtli~~~~~-ll~~~d~~~~~~~~~~l 320 (556)
++..+++.. ...+++|+|||+|++|+|+|..+.++|.+ ||++++++. .+|....++ +.+
T Consensus 544 ~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~ 618 (752)
T PRK12778 544 MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHA 618 (752)
T ss_pred EEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHH
Confidence 666543321 12468999999999999999999999987 999998764 344432222 234
Q ss_pred hCCCceEEEcCceEEEEEecCCCCeEEEEEe---------cCC-----CCCCCceEecCEEEEeeCCCCCCCCCCCcccc
Q 008714 321 INPRKIDYHTGVFATKITPAKDGKPVTIELI---------DAK-----TKEPKDTLEVDAALIATGRAPFTNGLGLENIN 386 (556)
Q Consensus 321 ~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~---------~g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 386 (556)
++ .||++++++.+.++..+++++...+++. +|. ..+++.++++|.||+|+|+.|+..++. ...+
T Consensus 619 ~~-~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~-~~~g 696 (752)
T PRK12778 619 KE-EGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPS-SIPG 696 (752)
T ss_pred HH-cCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccc-cccC
Confidence 44 7999999999999987655655455543 121 012235799999999999999986442 2235
Q ss_pred ccc-CCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 387 VVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 387 ~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
+.. ++|+|.||++++ |+.|||||+|||+.++.++..|+.+|+.||.+|.
T Consensus 697 l~~~~~G~i~vd~~~~------Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 697 LELNRKGTIVVDEEMQ------SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred ceECCCCCEEeCCCCC------CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 555 678999999988 7999999999999888899999999999999985
No 54
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=6.6e-32 Score=278.30 Aligned_cols=277 Identities=23% Similarity=0.305 Sum_probs=203.8
Q ss_pred cEEEECCChHHHHHHHHHHHc---CCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 103 DLIIIGAGVGGHGAALHAVEK---GLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
+|||||||+||+.+|.+|+++ +.+|+|||++.. ..+.+++|. + + ....+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~---~~~~~~~~~--~---------~--------------~g~~~ 52 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPG--M---------I--------------AGHYS 52 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC---CcccchhhH--H---------H--------------heeCC
Confidence 489999999999999999754 689999998431 000111110 0 0 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEe
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVI 257 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~ 257 (556)
. +++...+.+.++..|++++.+.+..++ .+.|.+.++++++||+||||||+.|..|+.++.. ..++
T Consensus 53 ~-----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~-~~~~ 120 (364)
T TIGR03169 53 L-----------DEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAA-DLAV 120 (364)
T ss_pred H-----------HHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCccc-cccc
Confidence 1 222233344566679999999887654 5678888888899999999999999888766532 2222
Q ss_pred ---ccccccc--------C--CCCCCeEEEEcCchhHHHHHHHHHh----CC--CeEEEEEeCCCCCCCCCHHHHHHHHH
Q 008714 258 ---TSDHALK--------L--EFVPDWIAIVGSGYIGLEFSDVYTA----LG--SEVTFIEALDQLMPGFDPEIGKLAQR 318 (556)
Q Consensus 258 ---t~~~~~~--------~--~~~~~~v~VvG~G~~g~e~A~~l~~----~g--~~Vtli~~~~~ll~~~d~~~~~~~~~ 318 (556)
+.+++.. . ...+++++|||+|++|+|+|..|.+ .| .+|+++ +.+.+++.+++++.+.+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~ 199 (364)
T TIGR03169 121 PVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLR 199 (364)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHH
Confidence 2111111 1 1235799999999999999988875 34 589999 6778888899999999999
Q ss_pred HHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeC
Q 008714 319 VLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVD 397 (556)
Q Consensus 319 ~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd 397 (556)
.+++ .||+++.++.+++++.+ .+.+.+| .++++|.+++|+|.+|+... ...++.. ++|+|.||
T Consensus 200 ~l~~-~gV~v~~~~~v~~i~~~------~v~~~~g------~~i~~D~vi~a~G~~p~~~l---~~~gl~~~~~g~i~vd 263 (364)
T TIGR03169 200 LLAR-RGIEVHEGAPVTRGPDG------ALILADG------RTLPADAILWATGARAPPWL---AESGLPLDEDGFLRVD 263 (364)
T ss_pred HHHH-CCCEEEeCCeeEEEcCC------eEEeCCC------CEEecCEEEEccCCChhhHH---HHcCCCcCCCCeEEEC
Confidence 9987 89999999999988532 3666665 68999999999999998642 3334444 67999999
Q ss_pred CCCccccCCCCcCCCEEEecccCCC-----CCcHHHHHHHHHHHHHHHh
Q 008714 398 ERMRVIDANGNLVPHLYCIGDANGK-----MMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 398 ~~l~~~~~~~t~~~~Vya~GD~~~~-----~~~~~~A~~qg~~aa~~i~ 441 (556)
+++|+ +++|||||+|||+.. ++.+..|.+||+++|+||.
T Consensus 264 ~~l~~-----~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 264 PTLQS-----LSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred Ccccc-----CCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 99995 589999999999843 4578889999999999996
No 55
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.1e-31 Score=283.99 Aligned_cols=283 Identities=20% Similarity=0.251 Sum_probs=200.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
...++|+||||||+|+++|..|+++|++|+|||+ +.+||.+.+ + +|.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~-g-ip~------------------------------ 185 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY-G-IPE------------------------------ 185 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec-c-CCC------------------------------
Confidence 3457999999999999999999999999999999 678876432 1 121
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTV 256 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v 256 (556)
+... ..+..+....+++.|++++.+... ...+.+.+. .+.||+||+|||+. |..++.++.+...+
T Consensus 186 ~~~~----------~~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv 251 (457)
T PRK11749 186 FRLP----------KDIVDREVERLLKLGVEIRTNTEV---GRDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGV 251 (457)
T ss_pred ccCC----------HHHHHHHHHHHHHcCCEEEeCCEE---CCccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCc
Confidence 0000 122233344566679999888753 122333332 37899999999996 66655555444445
Q ss_pred ecccccccC---------CCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCC-CCCCCCHHHHHHHHHHHhCCCc
Q 008714 257 ITSDHALKL---------EFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 257 ~t~~~~~~~---------~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~~g 325 (556)
++..+++.. ...+++|+|||+|++|+|+|..+.+.|. +|+++++.+. .++..+.+ .+.+++ .|
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~-----~~~~~~-~G 325 (457)
T PRK11749 252 YSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEE-----VEHAKE-EG 325 (457)
T ss_pred EEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH-----HHHHHH-CC
Confidence 544332211 1257999999999999999999999997 8999998764 35543322 344555 89
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEec---------CC----CCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CC
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELID---------AK----TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QR 391 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~---------g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~ 391 (556)
|++++++.+.++..+++ ....+++.. |. ..+++.++++|.||+++|++|+..++. +..++.. ++
T Consensus 326 V~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~-~~~gl~~~~~ 403 (457)
T PRK11749 326 VEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILS-TTPGLELNRW 403 (457)
T ss_pred CEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhc-cccCccCCCC
Confidence 99999999999986532 222233321 10 012335799999999999999976442 3344544 67
Q ss_pred CceeeCC-CCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 392 GFVPVDE-RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 392 G~i~vd~-~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
|+|.||+ +++ |+.|+|||+|||+..++++..|+.||+.||.+|.
T Consensus 404 g~i~vd~~~~~------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 404 GTIIADDETGR------TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred CCEEeCCCCCc------cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 8999998 677 7899999999999888899999999999999986
No 56
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=3.1e-31 Score=297.63 Aligned_cols=284 Identities=16% Similarity=0.188 Sum_probs=207.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+|+|||||||||+||..|+++|++|+|||+ +.+||...+. +|...+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG--IP~~rl---------------------------- 354 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG--IPEFRL---------------------------- 354 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc--CCCCcC----------------------------
Confidence 468999999999999999999999999999999 7889875421 332100
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~ 257 (556)
+ .++.+...+.++..||+++.+... .+.+++.+.....||+||||||+. |+.+++++.+...++
T Consensus 355 -p-----------~~vi~~~i~~l~~~Gv~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~ 419 (944)
T PRK12779 355 -P-----------NQLIDDVVEKIKLLGGRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVM 419 (944)
T ss_pred -h-----------HHHHHHHHHHHHhhcCeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcE
Confidence 0 122233344566679999887643 244555555556899999999995 887777776666677
Q ss_pred cccccccC----------------CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-CCCCCCHHHHHHHHHHH
Q 008714 258 TSDHALKL----------------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDPEIGKLAQRVL 320 (556)
Q Consensus 258 t~~~~~~~----------------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-ll~~~d~~~~~~~~~~l 320 (556)
+..+++.. ...+++|+|||||++|+|+|..+.++|.+||++.+++. .+|.... .+.+..
T Consensus 420 ~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~----e~~~a~ 495 (944)
T PRK12779 420 SANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVE----ELHHAL 495 (944)
T ss_pred EHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHH----HHHHHH
Confidence 66554321 12468999999999999999999999999999998764 3443322 233333
Q ss_pred hCCCceEEEcCceEEEEEecCCC-CeEEEEEe---------cCC----CCCCCceEecCEEEEeeCCCCCCCCCCCcccc
Q 008714 321 INPRKIDYHTGVFATKITPAKDG-KPVTIELI---------DAK----TKEPKDTLEVDAALIATGRAPFTNGLGLENIN 386 (556)
Q Consensus 321 ~~~~gV~~~~~~~v~~i~~~~~g-~~~~v~~~---------~g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 386 (556)
+ .||+++.+..++++..++++ ....+++. +|. ..+++.++++|.||+|+|+.|+.... ....+
T Consensus 496 -e-eGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~-~~~~g 572 (944)
T PRK12779 496 -E-EGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK-DAEPG 572 (944)
T ss_pred -H-CCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh-hcccC
Confidence 3 69999999999999765333 33333321 110 01233579999999999999997532 23345
Q ss_pred ccc-CCCceeeCCC-CccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 387 VVT-QRGFVPVDER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 387 ~~~-~~G~i~vd~~-l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
++. ++|.|.||++ ++ |+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 573 le~~~~G~I~vd~~~~~------Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 573 LKTNKWGTIEVEKGSQR------TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred ceECCCCCEEECCCCCc------cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHH
Confidence 655 6799999974 66 7999999999999988899999999999999986
No 57
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=264.27 Aligned_cols=286 Identities=24% Similarity=0.377 Sum_probs=225.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCC--eEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGL--KTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~--~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...++|||+|++|..|+.++++.|. +++++-++. .+| +
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~---------~~p-------------------------------y 113 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREY---------LLP-------------------------------Y 113 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccc---------cCc-------------------------------c
Confidence 3579999999999999999999975 466664321 011 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE---EecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT---ILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT 255 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~---~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~ 255 (556)
++..+........+.+.....++.++.+++++.+..+ +...++|.+++|+.+.|++|+||||+.|+.|+.++.+.+.
T Consensus 114 dr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~n 193 (478)
T KOG1336|consen 114 DRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKN 193 (478)
T ss_pred cchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccc
Confidence 2222222122222333333444677789999998754 4457889999999999999999999999999888887777
Q ss_pred EecccccccC------CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEE
Q 008714 256 VITSDHALKL------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 256 v~t~~~~~~~------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~ 328 (556)
+++..+..+. ....++|+|+|+|.+|+|+|..|...+.+||++++.+.++++ |.+++.+.+++++++ .||++
T Consensus 194 v~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~-kgVk~ 272 (478)
T KOG1336|consen 194 VFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN-KGVKF 272 (478)
T ss_pred eeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHh-cCeEE
Confidence 7655443322 234678999999999999999999999999999999999997 899999999999998 89999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccc-cCCCceeeCCCCccccCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVV-TQRGFVPVDERMRVIDANG 407 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~-~~~G~i~vd~~l~~~~~~~ 407 (556)
++++.+.+++.+.+|+...|.+.|+ +++++|.|++.+|.+||+.++.. +.. ..+|+|.||+++|
T Consensus 273 ~~~t~~s~l~~~~~Gev~~V~l~dg------~~l~adlvv~GiG~~p~t~~~~~---g~~~~~~G~i~V~~~f~------ 337 (478)
T KOG1336|consen 273 YLGTVVSSLEGNSDGEVSEVKLKDG------KTLEADLVVVGIGIKPNTSFLEK---GILLDSKGGIKVDEFFQ------ 337 (478)
T ss_pred EEecceeecccCCCCcEEEEEeccC------CEeccCeEEEeeccccccccccc---cceecccCCEeehhcee------
Confidence 9999999999988899999999998 89999999999999999998753 333 3899999999999
Q ss_pred CcCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhC
Q 008714 408 NLVPHLYCIGDANGKM----------MLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 408 t~~~~Vya~GD~~~~~----------~~~~~A~~qg~~aa~~i~g 442 (556)
|++|||||+||++..| .-+..|..+|+.++..+..
T Consensus 338 t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~ 382 (478)
T KOG1336|consen 338 TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKM 382 (478)
T ss_pred eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhc
Confidence 7899999999997542 1245577788866555543
No 58
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=1.2e-30 Score=266.93 Aligned_cols=284 Identities=20% Similarity=0.191 Sum_probs=196.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||+|++|+++|..|++.|++|++||+ +.+||..... ++.. .++.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~----------------------------~~~~ 68 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG--IPEF----------------------------RIPI 68 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec--Cccc----------------------------ccCH
Confidence 5899999999999999999999999999999 7777754311 0000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecC---------CEEE--EccceEEEeCeEEEeCCC-CCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP---------QKVK--FGTDNIVTAKDIIIATGS-VPFVPKG 248 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~---------~~v~--~~~~~~~~~d~lViAtG~-~p~~p~~ 248 (556)
+.+... .+.+.+.+++++.+....... .... ..++..+.||+||||||+ .|..|++
T Consensus 69 -----------~~~~~~-~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~i 136 (352)
T PRK12770 69 -----------ERVREG-VKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGI 136 (352)
T ss_pred -----------HHHHHH-HHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCC
Confidence 111111 123344589988886542211 0011 111224789999999999 4777776
Q ss_pred CCCCCCeEecccccc-----------cCCC----CCCeEEEEcCchhHHHHHHHHHhCCCe-EEEEEeCCCCCCCCCHHH
Q 008714 249 IEVDGKTVITSDHAL-----------KLEF----VPDWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQLMPGFDPEI 312 (556)
Q Consensus 249 ~~~~~~~v~t~~~~~-----------~~~~----~~~~v~VvG~G~~g~e~A~~l~~~g~~-Vtli~~~~~ll~~~d~~~ 312 (556)
++.+...+++..+.. .... .+++++|||+|++|+|+|..|...|.+ |+++++.+.......
T Consensus 137 pg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~--- 213 (352)
T PRK12770 137 PGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAG--- 213 (352)
T ss_pred CCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCC---
Confidence 666555565543211 1111 258999999999999999999999987 999998764321111
Q ss_pred HHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCC--------------CCCCCceEecCEEEEeeCCCCCCC
Q 008714 313 GKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK--------------TKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 313 ~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~--------------~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
....+.|++ +||+++++..+.+++.. ++...+++.+.. ..+.+.++++|.|++++|++|++.
T Consensus 214 -~~~~~~l~~-~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 289 (352)
T PRK12770 214 -KYEIERLIA-RGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP 289 (352)
T ss_pred -HHHHHHHHH-cCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCch
Confidence 233445666 89999999999998753 333344443221 012335799999999999999986
Q ss_pred CCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 379 GLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 379 ~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
+. .+..++.. ++|+|.||++++ |+.|+|||+|||++.+.++..|+.||+.||.+|.
T Consensus 290 l~-~~~~g~~~~~~g~i~vd~~~~------t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~ 346 (352)
T PRK12770 290 FA-KECLGIELNRKGEIVVDEKHM------TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIH 346 (352)
T ss_pred hh-hcccCceecCCCcEeeCCCcc------cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHH
Confidence 43 22256655 668899999999 7889999999999988899999999999999985
No 59
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.98 E-value=1.5e-31 Score=277.25 Aligned_cols=346 Identities=21% Similarity=0.274 Sum_probs=257.0
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK---GLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
..++|||.|.+|..+..++.+. -++++++-.. .+.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n----------------------------------------- 42 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN----------------------------------------- 42 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-----------------------------------------
Confidence 5799999999999999999984 4678888541 100
Q ss_pred cCHHHHHHHH--HHHHHHHHHHHHHHHHHcCcEEEeceEE-E--ecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 178 YDRQGVADHA--NNLATKIRNNLTNSMKALGVDILTGVGT-I--LGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~--~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
+++..+...+ +...+++...-.++.++.||+++.+... . .+.+.|.+..|.++.||+||+||||.|++||+++.+
T Consensus 43 Y~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~ 122 (793)
T COG1251 43 YNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSD 122 (793)
T ss_pred ccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCC
Confidence 0000000000 0011333334456778899999999754 3 356788888899999999999999999999998888
Q ss_pred CCeEecccccccC------CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCc
Q 008714 253 GKTVITSDHALKL------EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRK 325 (556)
Q Consensus 253 ~~~v~t~~~~~~~------~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~g 325 (556)
...++...+..++ ....++.+|||||..|+|.|..|...|.+|++++-.+.+|.. +|+.....+++.+++ .|
T Consensus 123 ~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~-~G 201 (793)
T COG1251 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLED-LG 201 (793)
T ss_pred CCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHh-hc
Confidence 6666544333222 233467899999999999999999999999999999998876 999999999999987 99
Q ss_pred eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccC
Q 008714 326 IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDA 405 (556)
Q Consensus 326 V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~ 405 (556)
|+++++...+++.+ .++...+.|+|| .++++|+|++++|.+||++.. ..+++..++| |.||++||
T Consensus 202 i~~~l~~~t~ei~g--~~~~~~vr~~DG------~~i~ad~VV~a~GIrPn~ela--~~aGlavnrG-Ivvnd~mq---- 266 (793)
T COG1251 202 IKVLLEKNTEEIVG--EDKVEGVRFADG------TEIPADLVVMAVGIRPNDELA--KEAGLAVNRG-IVVNDYMQ---- 266 (793)
T ss_pred ceeecccchhhhhc--CcceeeEeecCC------CcccceeEEEecccccccHhH--HhcCcCcCCC-eeeccccc----
Confidence 99999988888776 556778999998 799999999999999999865 5567777776 99999999
Q ss_pred CCCcCCCEEEecccCCC----CCcHHHHHHHHHHHHHHHhCCCcc-CCCCCccEEEec--ccceeEecCCHHHHHHhhhh
Q 008714 406 NGNLVPHLYCIGDANGK----MMLAHAASAQGISVVEQVTGRDHV-LNHLSIPAACFT--HPEISMVGLTEPQAREKAEK 478 (556)
Q Consensus 406 ~~t~~~~Vya~GD~~~~----~~~~~~A~~qg~~aa~~i~g~~~~-~~~~~~p~~~~~--~~~i~~vG~te~~a~~~~~~ 478 (556)
|+.|+|||+|+|+.. +.+...+..|++++|+|+.+.... +.. .+++.... .-++.++|--+ |.
T Consensus 267 --TsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~g-sv~stkLKv~Gvdl~S~GD~~-e~------ 336 (793)
T COG1251 267 --TSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEG-SVTSTKLKVSGVDVFSAGDFQ-ET------ 336 (793)
T ss_pred --ccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccccccc-ccchhhhcccccceeeccchh-hc------
Confidence 789999999999743 678889999999999999987653 322 23333332 33666666555 21
Q ss_pred cCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCc
Q 008714 479 EGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSK 528 (556)
Q Consensus 479 ~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~ 528 (556)
.+-+..+.. ++.++..|-+.-++ ++|+|+.++|..+
T Consensus 337 ~~~~~iv~~------------D~~~~iYKrlvL~d--d~IvgavL~GDt~ 372 (793)
T COG1251 337 EGAESIVFR------------DEQRGIYKKLVLKD--DKIVGAVLYGDTS 372 (793)
T ss_pred CCCceEEEe------------cccccceeEEEEeC--CeEEEEEEEeecc
Confidence 132222222 44556555444444 5999999999877
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.98 E-value=8e-31 Score=291.00 Aligned_cols=279 Identities=20% Similarity=0.273 Sum_probs=196.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..++|+||||||||++||..|++.|++|+|||+ +.+||.+.+. +|... .
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~--IP~~r----------------------------l 585 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IPEFR----------------------------I 585 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec--ccccC----------------------------C
Confidence 457999999999999999999999999999999 7889987432 33210 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCC-CCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVP-KGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p-~~~~~~~~~v~ 257 (556)
. .+...+..+.+...||+++.+... .+.+.+.....||+||||||+.+..+ +.++.. ..++
T Consensus 586 p------------~e~l~~~ie~l~~~GVe~~~g~~~-----d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~ 647 (1012)
T TIGR03315 586 S------------AESIQKDIELVKFHGVEFKYGCSP-----DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL 647 (1012)
T ss_pred C------------HHHHHHHHHHHHhcCcEEEEeccc-----ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-ccee
Confidence 0 011112223455679999887421 12233334567999999999985433 333322 2344
Q ss_pred ccccccc-------CCCCCCeEEEEcCchhHHHHHHHHHhC-C-CeEEEEEeCC-CCCCCCCHHHHHHHHHHHhCCCceE
Q 008714 258 TSDHALK-------LEFVPDWIAIVGSGYIGLEFSDVYTAL-G-SEVTFIEALD-QLMPGFDPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 258 t~~~~~~-------~~~~~~~v~VvG~G~~g~e~A~~l~~~-g-~~Vtli~~~~-~ll~~~d~~~~~~~~~~l~~~~gV~ 327 (556)
+..+++. ....+++|+|||||++|+|+|..+.+. | .+|+++.|++ ..+|..++++. +.+ + .||+
T Consensus 648 ~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~----~al-e-eGVe 721 (1012)
T TIGR03315 648 KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELE----EAL-E-DGVD 721 (1012)
T ss_pred eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHH----HHH-H-cCCE
Confidence 3322221 224689999999999999999998886 7 4899999876 45666555543 333 3 6899
Q ss_pred EEcCceEEEEEecCCCCeEEEE---Ee--c--CC----CCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCcee
Q 008714 328 YHTGVFATKITPAKDGKPVTIE---LI--D--AK----TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVP 395 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~---~~--~--g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~ 395 (556)
++.+..+.+++. ++ +.+. +. + |. ..+++.++++|.||+|+|+.|+++.+ +..++.. ++|+|.
T Consensus 722 ~~~~~~p~~I~~---g~-l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~ll--e~~GL~ld~~G~I~ 795 (1012)
T TIGR03315 722 FKELLSPESFED---GT-LTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLL--QKNGIPLDEYGWPV 795 (1012)
T ss_pred EEeCCceEEEEC---Ce-EEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHH--HhcCcccCCCCCEE
Confidence 999988888862 22 2221 11 0 10 01233579999999999999998865 4556654 679999
Q ss_pred eCCC-CccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 008714 396 VDER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD 444 (556)
Q Consensus 396 vd~~-l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~ 444 (556)
||++ ++ |+.|||||+|||+.+|.++..|+.||+.||.+|+++.
T Consensus 796 VD~~~~~------Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 796 VNQATGE------TNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred eCCCCCc------cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 9986 77 7899999999999888999999999999999998653
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=2.4e-30 Score=274.31 Aligned_cols=285 Identities=19% Similarity=0.240 Sum_probs=198.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..++|+|||||+||+++|..|+++|++|+|||+ +.+||.+.+ .+|... .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~----------------------------~ 191 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY--GIPDFK----------------------------L 191 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee--cCCccc----------------------------C
Confidence 457999999999999999999999999999999 778886532 122110 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~ 257 (556)
. ..+.....+.+.+.|++++.+.....+ +... .....||+||+|||+. |..+++++.+...++
T Consensus 192 ~------------~~~~~~~~~~~~~~gv~~~~~~~v~~~---~~~~-~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~ 255 (471)
T PRK12810 192 E------------KEVIDRRIELMEAEGIEFRTNVEVGKD---ITAE-ELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVH 255 (471)
T ss_pred C------------HHHHHHHHHHHHhCCcEEEeCCEECCc---CCHH-HHHhhCCEEEEecCCCCCCcCCCCCccCCCcE
Confidence 0 111122233556689999988754321 1111 1235799999999997 666666655545555
Q ss_pred cccccc--------------cCCCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCCCCCCCH-------HHHH-
Q 008714 258 TSDHAL--------------KLEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQLMPGFDP-------EIGK- 314 (556)
Q Consensus 258 t~~~~~--------------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~ll~~~d~-------~~~~- 314 (556)
+..+++ .....+++|+|||+|++|+|+|..+.+.|. +|+++++.+ ++..+. .+..
T Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~--~~~~~~~~~~~~~~~~~~ 333 (471)
T PRK12810 256 FAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP--MPPSRRNKNNPWPYWPMK 333 (471)
T ss_pred EHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC--CCccccccccCCcccchH
Confidence 432111 123457999999999999999998888885 798765543 332221 0011
Q ss_pred HHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe-----cCC---CCCCCceEecCEEEEeeCCCCCCCCCCCcccc
Q 008714 315 LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI-----DAK---TKEPKDTLEVDAALIATGRAPFTNGLGLENIN 386 (556)
Q Consensus 315 ~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-----~g~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 386 (556)
...+.+++ .||++++++.+++|..+ +++...|++. +|. ..++..++++|.||+|+|++|+...+ ++..+
T Consensus 334 ~~~~~~~~-~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~g 410 (471)
T PRK12810 334 LEVSNAHE-EGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQFG 410 (471)
T ss_pred HHHHHHHH-cCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-ccccC
Confidence 12334445 79999999999999753 4554445443 220 11234679999999999999986433 35556
Q ss_pred ccc-CCCceeeC-CCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 387 VVT-QRGFVPVD-ERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 387 ~~~-~~G~i~vd-~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
+.. ++|++.+| ++++ |+.|+|||+|||++++.+...|+.||+.||.+|.
T Consensus 411 l~~~~~g~i~vd~~~~~------Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 411 VELDERGRVAAPDNAYQ------TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 461 (471)
T ss_pred cccCCCCCEEeCCCccc------CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHH
Confidence 665 67899998 6888 7999999999999888889999999999999985
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=289.68 Aligned_cols=284 Identities=17% Similarity=0.167 Sum_probs=201.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+|+|||||||||+||..|+++|++|+|||+ +.+||...+ .+|... .
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~--gip~~r----------------------------l 478 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY--GIPSFR----------------------------L 478 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec--cCCccC----------------------------C
Confidence 457999999999999999999999999999999 678875432 122110 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccce-EEEeCeEEEeCCCC-CCCCCCCCCCCCeE
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDN-IVTAKDIIIATGSV-PFVPKGIEVDGKTV 256 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~-~~~~d~lViAtG~~-p~~p~~~~~~~~~v 256 (556)
. .++.....+.++..||+++.+... ...+++.+-. ...||+||||||+. |+.+++++.+...+
T Consensus 479 -~-----------~e~~~~~~~~l~~~Gv~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV 543 (1006)
T PRK12775 479 -P-----------RDIIDREVQRLVDIGVKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQV 543 (1006)
T ss_pred -C-----------HHHHHHHHHHHHHCCCEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCc
Confidence 0 122233444566789999988642 1222222211 34699999999995 78777776555556
Q ss_pred ecccccccC---------------CCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCC-CCCCCCHHHHHHHHHH
Q 008714 257 ITSDHALKL---------------EFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-LMPGFDPEIGKLAQRV 319 (556)
Q Consensus 257 ~t~~~~~~~---------------~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~-ll~~~d~~~~~~~~~~ 319 (556)
++..+++.. ...+++|+|||||++|+|+|..+.++|. .|+++.|... -+|....+ + +.
T Consensus 544 ~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e----~-~~ 618 (1006)
T PRK12775 544 YSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE----I-RH 618 (1006)
T ss_pred EEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH----H-HH
Confidence 666443211 2357999999999999999999999996 5888887643 23322111 1 23
Q ss_pred HhCCCceEEEcCceEEEEEecCCCCeEEEEEec---------CC----CCCCCceEecCEEEEeeCCCCCCCCCCCcccc
Q 008714 320 LINPRKIDYHTGVFATKITPAKDGKPVTIELID---------AK----TKEPKDTLEVDAALIATGRAPFTNGLGLENIN 386 (556)
Q Consensus 320 l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---------g~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~ 386 (556)
+++ .||++++++.+.++..+++|+...+++.. |. ..++..++++|.||+++|+.||+..+. ...+
T Consensus 619 a~e-eGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~-~~~g 696 (1006)
T PRK12775 619 AKE-EGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQ-STPG 696 (1006)
T ss_pred HHh-CCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhh-ccCC
Confidence 444 79999999999999866566655555431 10 012234799999999999999986432 2234
Q ss_pred ccc-CCCceeeCC-----CCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 387 VVT-QRGFVPVDE-----RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 387 ~~~-~~G~i~vd~-----~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
+.. ++|.|.+|+ +++ |++|+|||+||++.++.+...|+.+|+.||.+|.
T Consensus 697 l~l~~~G~I~vd~~~v~~~~~------Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 697 LALNKWGNIAADDGKLESTQS------TNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred cccCCCCcEEeCCCccccCcC------CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 554 678899996 566 8999999999999888999999999999999985
No 63
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=1.8e-29 Score=266.67 Aligned_cols=283 Identities=18% Similarity=0.245 Sum_probs=199.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+|+|||+||+|+++|..|+++|++|+|+|+ +.+||...+ .+|...+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~---------------------------- 189 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKL---------------------------- 189 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccC----------------------------
Confidence 457999999999999999999999999999999 778886532 2332110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCC-CCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFV-PKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~-p~~~~~~~~~v~ 257 (556)
+ ..+.....+.+++.|++++.+..... .+.+.+ ....||.||+|||+.+.. +++++.+...++
T Consensus 190 ~------------~~~~~~~~~~~~~~Gv~~~~~~~v~~---~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~ 253 (467)
T TIGR01318 190 D------------KAVLSRRREIFTAMGIEFHLNCEVGR---DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVL 253 (467)
T ss_pred C------------HHHHHHHHHHHHHCCCEEECCCEeCC---ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcE
Confidence 0 11222334456678999987763311 122222 235799999999998643 344444444454
Q ss_pred ccccc--------ccC---------CCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCC-CCCCCCHHHHHHHHH
Q 008714 258 TSDHA--------LKL---------EFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-LMPGFDPEIGKLAQR 318 (556)
Q Consensus 258 t~~~~--------~~~---------~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~-ll~~~d~~~~~~~~~ 318 (556)
+..++ ..+ ...+++++|||+|++|+|+|..+.++|. +||+++|++. .++..+.++ +
T Consensus 254 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-----~ 328 (467)
T TIGR01318 254 QALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-----A 328 (467)
T ss_pred EHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-----H
Confidence 32211 011 1346899999999999999999999994 7999998775 466554443 2
Q ss_pred HHhCCCceEEEcCceEEEEEecCCCCeEEEEEec---------CC-----CCCCCceEecCEEEEeeCCCCCCCCCCCcc
Q 008714 319 VLINPRKIDYHTGVFATKITPAKDGKPVTIELID---------AK-----TKEPKDTLEVDAALIATGRAPFTNGLGLEN 384 (556)
Q Consensus 319 ~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---------g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 384 (556)
.+++ .||++++++.+.++..+++++...+++.. |. ..+++.++++|.||+++|++|+...+ ++.
T Consensus 329 ~~~~-~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~-~~~ 406 (467)
T TIGR01318 329 NARE-EGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-LAG 406 (467)
T ss_pred HHHh-cCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-ccc
Confidence 2344 79999999999999765455554444421 10 01233579999999999999986432 344
Q ss_pred ccccc-CCCceeeC----CCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 385 INVVT-QRGFVPVD----ERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 385 ~~~~~-~~G~i~vd----~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
.++.. ++|+|.|| ++++ |+.|+|||+|||++.+.+...|+.+|+.||.+|.
T Consensus 407 ~gl~~~~~g~i~vd~~~~~~~~------T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 407 HGITLDSWGRIITGDVSYLPYQ------TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred cCccCCCCCCEEeCCccccCcc------CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 55655 67899999 5677 7899999999999988899999999999999985
No 64
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=1.4e-29 Score=277.33 Aligned_cols=282 Identities=19% Similarity=0.226 Sum_probs=199.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..++|+||||||+|+++|..|++.|++|+|||+ +.+||.+.+ + +|...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~-g-ip~~~----------------------------- 240 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY-G-IPRFR----------------------------- 240 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee-c-CCCCC-----------------------------
Confidence 457999999999999999999999999999999 778887642 1 22100
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCC-CCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p-~~p~~~~~~~~~v~ 257 (556)
.+ ..+..+..+.+.+.|++++.+..... .+.+.+ ....||+||+|||+.+ ..+++++.+...++
T Consensus 241 ~~-----------~~~~~~~~~~l~~~Gv~i~~~~~v~~---dv~~~~-~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~ 305 (652)
T PRK12814 241 LP-----------ESVIDADIAPLRAMGAEFRFNTVFGR---DITLEE-LQKEFDAVLLAVGAQKASKMGIPGEELPGVI 305 (652)
T ss_pred CC-----------HHHHHHHHHHHHHcCCEEEeCCcccC---ccCHHH-HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcE
Confidence 00 11122223345667999988764311 122222 1235999999999985 34555554444455
Q ss_pred ccccccc------CCCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCC-CCCCCCHHHHHHHHHHHhCCCceEEE
Q 008714 258 TSDHALK------LEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 258 t~~~~~~------~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~~gV~~~ 329 (556)
+..+++. ....+++|+|||+|++|+|+|..+.++|. +||++.++++ .||..+.++ .+.+ + .||+++
T Consensus 306 ~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a~-~-eGV~i~ 379 (652)
T PRK12814 306 SGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEAL-A-EGVSLR 379 (652)
T ss_pred eHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHHH-H-cCCcEE
Confidence 4433321 23457999999999999999999999995 6999998875 566654443 3333 3 699999
Q ss_pred cCceEEEEEecCCCCeE-EEEEecCCC-----------CCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceee
Q 008714 330 TGVFATKITPAKDGKPV-TIELIDAKT-----------KEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPV 396 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~-~v~~~~g~~-----------~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~v 396 (556)
++..+.++...+++..+ .+.+.++.. ++++.++++|.||+++|+.|++.++ +..++.. .+|+|.|
T Consensus 380 ~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll--~~~gl~~~~~G~I~v 457 (652)
T PRK12814 380 ELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA--EAAGIGTSRNGTVKV 457 (652)
T ss_pred eccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc--cccCccccCCCcEee
Confidence 99999998764332111 122332210 1223479999999999999998865 4455655 5799999
Q ss_pred CCC-CccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 397 DER-MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 397 d~~-l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
|++ ++ |+.|||||+||++..+.++..|+.||+.||.+|.
T Consensus 458 d~~~~~------Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 458 DPETLQ------TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred CCCCCc------CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 975 66 7999999999999888899999999999999985
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=2.3e-29 Score=276.86 Aligned_cols=283 Identities=18% Similarity=0.245 Sum_probs=198.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+|+|||||||||++|..|+++|++|+|||+ +.+||.+.+ .+|...+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~--gip~~~l---------------------------- 375 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF--GIPAFKL---------------------------- 375 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee--cCCCccC----------------------------
Confidence 457999999999999999999999999999999 788887543 1332110
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCC-CCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPF-VPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~-~p~~~~~~~~~v~ 257 (556)
+ ..+.....+.+++.|++++.+..... .+.+.+ ....||.|++|||+.+. .+++++.+...++
T Consensus 376 ~------------~~~~~~~~~~~~~~Gv~~~~~~~v~~---~i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~ 439 (654)
T PRK12769 376 D------------KSLLARRREIFSAMGIEFELNCEVGK---DISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVY 439 (654)
T ss_pred C------------HHHHHHHHHHHHHCCeEEECCCEeCC---cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeE
Confidence 0 11122223455667999987763311 111111 12479999999998743 3444444333444
Q ss_pred cccc--------ccc---------CCCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCC-CCCCCHHHHHHHHH
Q 008714 258 TSDH--------ALK---------LEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL-MPGFDPEIGKLAQR 318 (556)
Q Consensus 258 t~~~--------~~~---------~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~l-l~~~d~~~~~~~~~ 318 (556)
+..+ ... ....+++|+|||+|++|+|+|..+.++|. +||++++++.. +|..+.++ +
T Consensus 440 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~-----~ 514 (654)
T PRK12769 440 DALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV-----K 514 (654)
T ss_pred EhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHH-----H
Confidence 2211 111 11346899999999999999999999985 79999987654 56544432 3
Q ss_pred HHhCCCceEEEcCceEEEEEecCCCCeEEEEEec---------CCC-----CCCCceEecCEEEEeeCCCCCCCCCCCcc
Q 008714 319 VLINPRKIDYHTGVFATKITPAKDGKPVTIELID---------AKT-----KEPKDTLEVDAALIATGRAPFTNGLGLEN 384 (556)
Q Consensus 319 ~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---------g~~-----~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 384 (556)
.+++ .||+++++..++++..+++++...|++.. |.. .+++.++++|.||+|+|+.|+...+ ++.
T Consensus 515 ~~~~-~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~ 592 (654)
T PRK12769 515 NARE-EGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW-LES 592 (654)
T ss_pred HHHH-cCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-ccc
Confidence 3445 79999999999999765556554555421 110 1233479999999999999986432 355
Q ss_pred ccccc-CCCceeeCC----CCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 385 INVVT-QRGFVPVDE----RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 385 ~~~~~-~~G~i~vd~----~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
.++.. ++|.|.||+ +++ |+.|+|||+||++.++.+...|+.+|+.||++|.
T Consensus 593 ~gl~~~~~G~i~vd~~~~~~~~------Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 593 HGVTVDKWGRIIADVESQYRYQ------TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred cCCcCCCCCCEEeCCCcccCcc------cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 66666 678999986 367 7999999999999988999999999999999985
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=2.5e-28 Score=258.85 Aligned_cols=286 Identities=17% Similarity=0.238 Sum_probs=194.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+|+|||+|++|+++|..|++.|++|+|||+ +.+||.+.+. +|... .+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g--ip~~~----------------------------~~ 192 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG--IPNMK----------------------------LD 192 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc--CCCcc----------------------------CC
Confidence 46999999999999999999999999999999 6788765321 22110 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEec
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVIT 258 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~t 258 (556)
..+.....+.+++.||+++.+..... .+.. +.....||.||+|||+. |..+++++.+...+++
T Consensus 193 ------------~~~~~~~~~~~~~~Gv~~~~~~~v~~---~~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~ 256 (485)
T TIGR01317 193 ------------KAIVDRRIDLLSAEGIDFVTNTEIGV---DISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHY 256 (485)
T ss_pred ------------HHHHHHHHHHHHhCCCEEECCCEeCC---ccCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEe
Confidence 01112223456668999998875421 1111 12246799999999998 7777766655555654
Q ss_pred ccccc----------------cCCCCCCeEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCCCCCCC---------H--
Q 008714 259 SDHAL----------------KLEFVPDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQLMPGFD---------P-- 310 (556)
Q Consensus 259 ~~~~~----------------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~ll~~~d---------~-- 310 (556)
.-+++ .....+++|+|||+|++|+|+|..+.++| .+|+++++.+.++.... .
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~ 336 (485)
T TIGR01317 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVY 336 (485)
T ss_pred HHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhh
Confidence 32111 11135799999999999999988877777 68999998876543211 1
Q ss_pred HHHHHHHHHHhCCCceEE-EcCceEEEEEecCCCCeEEEEEe--------cCC-----CCCCCceEecCEEEEeeCCC-C
Q 008714 311 EIGKLAQRVLINPRKIDY-HTGVFATKITPAKDGKPVTIELI--------DAK-----TKEPKDTLEVDAALIATGRA-P 375 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~-~~~~~v~~i~~~~~g~~~~v~~~--------~g~-----~~~~~~~i~~D~vi~a~G~~-p 375 (556)
+.....++..+. .||.+ +++..+.+|..+++++...+++. +|. ..+++.++++|.||+++|+. |
T Consensus 337 e~~~a~~e~~~~-~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p 415 (485)
T TIGR01317 337 RVDYAHEEAAAH-YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGP 415 (485)
T ss_pred hhHHHHHhhhhh-cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCC
Confidence 122223333332 56644 45777888876544555445431 221 01233579999999999996 8
Q ss_pred CCCCCCCccccccc-CCCceee-CCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 376 FTNGLGLENINVVT-QRGFVPV-DERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 376 ~~~~l~l~~~~~~~-~~G~i~v-d~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
++.++ +..++.. ++|++.+ |++++ |+.|||||+|||+.++.+...|+.+|+.||.+|.
T Consensus 416 ~~~~~--~~~gl~~~~~G~i~~~~~~~~------Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 416 EQILL--DDFGVKKTRRGNISAGYDDYS------TSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred ccccc--cccCcccCCCCCEEecCCCce------ECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHH
Confidence 87755 4556664 6788855 56787 7999999999999888889999999999999985
No 67
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=4.5e-28 Score=265.41 Aligned_cols=284 Identities=18% Similarity=0.264 Sum_probs=198.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+|+|||+||+|+++|..|+++|++|+|+|+ +.+||.+.+ | +|... +
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~-g-ip~~~----------------------------l 358 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF-G-IPPFK----------------------------L 358 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec-c-CCccc----------------------------C
Confidence 457899999999999999999999999999999 778886542 2 22110 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCC-CCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p-~~p~~~~~~~~~v~ 257 (556)
+ ..+.....+.++..||+++.+.... ..+.+.+ ....||.|++|||+.+ ..+++++.+...++
T Consensus 359 ~------------~~~~~~~~~~~~~~Gv~~~~~~~v~---~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~ 422 (639)
T PRK12809 359 D------------KTVLSQRREIFTAMGIDFHLNCEIG---RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVI 422 (639)
T ss_pred C------------HHHHHHHHHHHHHCCeEEEcCCccC---CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcE
Confidence 1 1112223345667899998876321 1222222 2357999999999974 33444444333344
Q ss_pred ccc--------ccccC---------CCCCCeEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCC-CCCCCHHHHHHHHH
Q 008714 258 TSD--------HALKL---------EFVPDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQL-MPGFDPEIGKLAQR 318 (556)
Q Consensus 258 t~~--------~~~~~---------~~~~~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~l-l~~~d~~~~~~~~~ 318 (556)
+.- +...+ ...+++++|||+|++++|+|..+.++| .+||++.|++.. +|..+.++. +
T Consensus 423 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~----~ 498 (639)
T PRK12809 423 QALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV----N 498 (639)
T ss_pred eHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH----H
Confidence 321 11111 124689999999999999999988998 589999987654 665544432 2
Q ss_pred HHhCCCceEEEcCceEEEEEecCCCCeEEEEE---ec------CC-----CCCCCceEecCEEEEeeCCCCCCCCCCCcc
Q 008714 319 VLINPRKIDYHTGVFATKITPAKDGKPVTIEL---ID------AK-----TKEPKDTLEVDAALIATGRAPFTNGLGLEN 384 (556)
Q Consensus 319 ~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~---~~------g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 384 (556)
+++ .||++++++.+++|..+++++...+++ .. |. ..+++.++++|.||+|+|+.|+...+ ++.
T Consensus 499 -a~~-eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~ 575 (639)
T PRK12809 499 -ARE-EGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW-LQG 575 (639)
T ss_pred -HHH-cCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-ccc
Confidence 234 799999999999998655555444433 11 10 01234579999999999999986433 355
Q ss_pred ccccc-CCCceeeCCC----CccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q 008714 385 INVVT-QRGFVPVDER----MRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 385 ~~~~~-~~G~i~vd~~----l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g 442 (556)
.++.. ++|+|.||++ +| |+.|+|||+||+..++.+...|+.+|+.||++|..
T Consensus 576 ~gl~~~~~G~i~vd~~~~~~~~------Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 576 SGIKLDKWGLIQTGDVGYLPTQ------THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred cCcccCCCCCEEeCCCcccCcc------cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 66665 6788999863 67 78999999999998888999999999999999863
No 68
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=8.8e-28 Score=262.82 Aligned_cols=283 Identities=18% Similarity=0.209 Sum_probs=193.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
....+|+|||+|++|+++|..|+++|++|+|+|+ +.+||...+. +|...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~--i~~~~---------------------------- 330 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG--IPSYR---------------------------- 330 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec--CCccc----------------------------
Confidence 3457899999999999999999999999999999 6777754321 22110
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTV 256 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v 256 (556)
.. +++.....+.+++.|++++.+..+..+ +...+ ....||+||+|||+. |+.+++++.+...+
T Consensus 331 ~~------------~~~~~~~~~~~~~~gv~~~~~~~v~~~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv 394 (604)
T PRK13984 331 LP------------DEALDKDIAFIEALGVKIHLNTRVGKD---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDV 394 (604)
T ss_pred CC------------HHHHHHHHHHHHHCCcEEECCCEeCCc---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCe
Confidence 00 111112234556689999887644211 11121 245799999999987 56666666555555
Q ss_pred eccccccc-C----------CCCCCeEEEEcCchhHHHHHHHHHhCC------CeEEEEEeC--CCCCCCCCHHHHHHHH
Q 008714 257 ITSDHALK-L----------EFVPDWIAIVGSGYIGLEFSDVYTALG------SEVTFIEAL--DQLMPGFDPEIGKLAQ 317 (556)
Q Consensus 257 ~t~~~~~~-~----------~~~~~~v~VvG~G~~g~e~A~~l~~~g------~~Vtli~~~--~~ll~~~d~~~~~~~~ 317 (556)
++..+.+. + ...+++|+|||||++|+|+|..+.+++ .+|+++... ...++..+.+ +.
T Consensus 395 ~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e----~~ 470 (604)
T PRK13984 395 IQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEE----IE 470 (604)
T ss_pred EeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHH----HH
Confidence 54433321 1 134799999999999999999999875 378886432 2223332222 23
Q ss_pred HHHhCCCceEEEcCceEEEEEecCCCCeEEEEEec--------CC-----CCCCCceEecCEEEEeeCCCCCCCCCCCc-
Q 008714 318 RVLINPRKIDYHTGVFATKITPAKDGKPVTIELID--------AK-----TKEPKDTLEVDAALIATGRAPFTNGLGLE- 383 (556)
Q Consensus 318 ~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~--------g~-----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~- 383 (556)
+.+ + .||+++.+..+.++..+ +++...+++.+ |. ..+++.++++|.||+++|++||++.+..+
T Consensus 471 ~~~-~-~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~ 547 (604)
T PRK13984 471 EGL-E-EGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEEL 547 (604)
T ss_pred HHH-H-cCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhh
Confidence 333 3 69999999988888653 44444444431 10 01223579999999999999998876421
Q ss_pred ccccccCCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 384 NINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 384 ~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
..++..++|+|.||+++| |++|+|||+||++..+.+ ..|+.+|+.||++|.
T Consensus 548 ~~~l~~~~G~i~vd~~~~------Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 548 KSKLEFVRGRILTNEYGQ------TSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGID 598 (604)
T ss_pred ccCccccCCeEEeCCCCc------cCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHH
Confidence 123444678999999999 799999999999988765 679999999999985
No 69
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.96 E-value=5.2e-28 Score=236.02 Aligned_cols=291 Identities=22% Similarity=0.289 Sum_probs=203.8
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccc
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (556)
......+|||+|+|++|.+....|-..-++|+||.+ +.+-=++ .+||-+ .
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTP----LLpS~~-------------------------v 101 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTP----LLPSTT-------------------------V 101 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEee----ccCCcc-------------------------c
Confidence 344567999999999999999999988999999987 4322222 223211 1
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec--CCEEEE----ccc----eEEEeCeEEEeCCCCCCC
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG--PQKVKF----GTD----NIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~~----~~~----~~~~~d~lViAtG~~p~~ 245 (556)
..++.+.+.+........ ..-++.++......+| .+.|.+ .++ ..+.||+||+|+|+.+..
T Consensus 102 GTve~rSIvEPIr~i~r~---------k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 102 GTVELRSIVEPIRAIARK---------KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred cceeehhhhhhHHHHhhc---------cCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 223333333222222111 1126777777666554 445543 223 578999999999999998
Q ss_pred CCCCCCCCCeEe--cccccccC-----------CCC---------CCeEEEEcCchhHHHHHHHHHhC------------
Q 008714 246 PKGIEVDGKTVI--TSDHALKL-----------EFV---------PDWIAIVGSGYIGLEFSDVYTAL------------ 291 (556)
Q Consensus 246 p~~~~~~~~~v~--t~~~~~~~-----------~~~---------~~~v~VvG~G~~g~e~A~~l~~~------------ 291 (556)
+++++......+ ..+++.+. ... --+++|||||++|+|+|.+|+..
T Consensus 173 FgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l 252 (491)
T KOG2495|consen 173 FGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPEL 252 (491)
T ss_pred CCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcc
Confidence 887765443221 12222111 111 13889999999999999888754
Q ss_pred --CCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEE
Q 008714 292 --GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 292 --g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~ 369 (556)
-.+||+++..|++|+.||..+.++.++.+.+ .+|.+..++.+.+++.. .+.+...|| +.++|++-+++|
T Consensus 253 ~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~-~~I~~~~~t~Vk~V~~~----~I~~~~~~g----~~~~iPYG~lVW 323 (491)
T KOG2495|consen 253 KKDIKVTLIEAADHILNMFDKRLVEYAENQFVR-DGIDLDTGTMVKKVTEK----TIHAKTKDG----EIEEIPYGLLVW 323 (491)
T ss_pred hhheEEEeeccchhHHHHHHHHHHHHHHHHhhh-ccceeecccEEEeecCc----EEEEEcCCC----ceeeecceEEEe
Confidence 2579999999999999999999999999987 89999999999998653 234444443 347899999999
Q ss_pred eeCCCCCCC--CCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEecccCC---CCCcHHHHHHHHHHHHHHHh
Q 008714 370 ATGRAPFTN--GLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG---KMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 370 a~G~~p~~~--~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~---~~~~~~~A~~qg~~aa~~i~ 441 (556)
+||..|... .| .+..+-.. +..+.||++||+ .+.+||||+|||+. .++++++|.+||.++|+|+-
T Consensus 324 atG~~~rp~~k~l-m~~i~e~~-rr~L~vDE~LrV-----~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 324 ATGNGPRPVIKDL-MKQIDEQG-RRGLAVDEWLRV-----KGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred cCCCCCchhhhhH-hhcCCccC-ceeeeeeceeec-----cCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 999977653 22 12222111 226999999999 89999999999983 35689999999999999874
No 70
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.96 E-value=7.7e-27 Score=243.66 Aligned_cols=290 Identities=16% Similarity=0.169 Sum_probs=194.1
Q ss_pred CccEEEECCChHHHHHHHHHHH--cCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVE--KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
..+|+||||||||++||..|++ .|++|+|||+ +.+||... .|..|.+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr-~gvaP~~~~--------------------------- 77 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR-SGVAPDHPE--------------------------- 77 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe-eccCCCcch---------------------------
Confidence 4689999999999999999997 6999999999 78888553 233232111
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCC-CCCCCCCCCCCeE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVP-FVPKGIEVDGKTV 256 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p-~~p~~~~~~~~~v 256 (556)
...+...+...+...+|+++.+... .+.+.+.+. ...||.||+|||+.+ ..+++++.+...+
T Consensus 78 -------------~k~v~~~~~~~~~~~~v~~~~nv~v---g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV 140 (491)
T PLN02852 78 -------------TKNVTNQFSRVATDDRVSFFGNVTL---GRDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGV 140 (491)
T ss_pred -------------hHHHHHHHHHHHHHCCeEEEcCEEE---CccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCe
Confidence 0112223333455568887765422 223344332 347999999999985 5566666665667
Q ss_pred eccccccc----------C---CCCCCeEEEEcCchhHHHHHHHHHhC--------------------C-CeEEEEEeCC
Q 008714 257 ITSDHALK----------L---EFVPDWIAIVGSGYIGLEFSDVYTAL--------------------G-SEVTFIEALD 302 (556)
Q Consensus 257 ~t~~~~~~----------~---~~~~~~v~VvG~G~~g~e~A~~l~~~--------------------g-~~Vtli~~~~ 302 (556)
++..++.. + ...+++|+|||+|++|+|+|..|.+. | .+|+++.|+.
T Consensus 141 ~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg 220 (491)
T PLN02852 141 LSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRG 220 (491)
T ss_pred EEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCC
Confidence 76655421 1 12468999999999999999998775 5 5699999887
Q ss_pred CCCCCC-CHHH-------------------------------------HHHHHHHHhC--------CCceEEEcCceEEE
Q 008714 303 QLMPGF-DPEI-------------------------------------GKLAQRVLIN--------PRKIDYHTGVFATK 336 (556)
Q Consensus 303 ~ll~~~-d~~~-------------------------------------~~~~~~~l~~--------~~gV~~~~~~~v~~ 336 (556)
..-..| .+|+ .+.+.+...+ ..+|.+++...+.+
T Consensus 221 ~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~e 300 (491)
T PLN02852 221 PVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTR 300 (491)
T ss_pred hHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeE
Confidence 321111 1111 1122222111 15799999999999
Q ss_pred EEecC--CCCeEEEEEec---------CC----CCCCCceEecCEEEEeeCCC--CCCCC-CCCcccccc-cCCCceeeC
Q 008714 337 ITPAK--DGKPVTIELID---------AK----TKEPKDTLEVDAALIATGRA--PFTNG-LGLENINVV-TQRGFVPVD 397 (556)
Q Consensus 337 i~~~~--~g~~~~v~~~~---------g~----~~~~~~~i~~D~vi~a~G~~--p~~~~-l~l~~~~~~-~~~G~i~vd 397 (556)
|..++ ++++..+++.. |. ..++..++++|.||.++|++ |+... ++ ...++. .++|+|.+|
T Consensus 301 i~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~-~~~gv~~n~~G~V~~d 379 (491)
T PLN02852 301 FLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFD-HKRGVVPNVHGRVLSS 379 (491)
T ss_pred EEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccc-cCcCeeECCCceEEeC
Confidence 97532 24555565541 11 02234579999999999998 55542 22 222333 378999999
Q ss_pred CCCccccCCCCcCCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhC
Q 008714 398 ERMRVIDANGNLVPHLYCIGDANGKMM-LAHAASAQGISVVEQVTG 442 (556)
Q Consensus 398 ~~l~~~~~~~t~~~~Vya~GD~~~~~~-~~~~A~~qg~~aa~~i~g 442 (556)
+.++ |+.|||||+|||..+|. +...++.+|+.++++|..
T Consensus 380 ~~~~------T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 380 ASGA------DTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred CCCc------cCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHH
Confidence 8877 78999999999987665 888899999999999873
No 71
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.9e-27 Score=209.05 Aligned_cols=287 Identities=22% Similarity=0.273 Sum_probs=203.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCc-----CCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-----VGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~-----~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (556)
..+|+|||+|||+.+||+.+++..++-+|+|... +||+..... .+ . ...|+|...
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT------------~v------e--NfPGFPdgi 67 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT------------DV------E--NFPGFPDGI 67 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee------------cc------c--cCCCCCccc
Confidence 4589999999999999999999999999999733 244332110 00 0 112333221
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCEEEEccceEEEeCeEEEeCCCCCCC---CC-
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFV---PK- 247 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~---p~- 247 (556)
. . .++.+.++++.++.|.+++..++..++ ++.+.++ .+.+.+|.+|+|||+..+. |.
T Consensus 68 ~---G-----------~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td-~~~v~~~avI~atGAsAkRl~~pg~ 132 (322)
T KOG0404|consen 68 T---G-----------PELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTD-ARPVTADAVILATGASAKRLHLPGE 132 (322)
T ss_pred c---c-----------HHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEec-CCceeeeeEEEecccceeeeecCCC
Confidence 1 1 345556667778889999999876543 4556554 4689999999999987653 32
Q ss_pred CCC-CCCCeEecccccccCC--CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCC
Q 008714 248 GIE-VDGKTVITSDHALKLE--FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPR 324 (556)
Q Consensus 248 ~~~-~~~~~v~t~~~~~~~~--~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~ 324 (556)
+.+ ++...+-.|.-+.... +..|..+|||||.+++|-|.+|.+.+.+|++++|++++- .++.+++..++..
T Consensus 133 ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------As~~Mq~ra~~np 206 (322)
T KOG0404|consen 133 GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------ASKIMQQRAEKNP 206 (322)
T ss_pred CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh------HHHHHHHHHhcCC
Confidence 122 5555565554444433 567899999999999999999999999999999999763 3455566555558
Q ss_pred ceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccc
Q 008714 325 KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVI 403 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~ 403 (556)
+|+++.++.+.+..++ .+..-.+.+.+-.+ +++..++++-+++++|..|+++++.- +++. .+|+|.+-+.-..
T Consensus 207 nI~v~~nt~~~ea~gd-~~~l~~l~ikn~~t-ge~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~- 280 (322)
T KOG0404|consen 207 NIEVLYNTVAVEALGD-GKLLNGLRIKNVKT-GEETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSL- 280 (322)
T ss_pred CeEEEechhhhhhccC-cccccceEEEeccc-CcccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCccc-
Confidence 9999999988777664 22222344443322 23468999999999999999998742 4555 8899988754332
Q ss_pred cCCCCcCCCEEEecccCCC-CCcHHHHHHHHHHHHH
Q 008714 404 DANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVE 438 (556)
Q Consensus 404 ~~~~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~ 438 (556)
|++|++||+||+... ++.+..|...|.++|-
T Consensus 281 ----TsvpG~FAAGDVqD~kyRQAvTaAgsGciaal 312 (322)
T KOG0404|consen 281 ----TSVPGVFAAGDVQDKKYRQAVTAAGSGCIAAL 312 (322)
T ss_pred ----ccccceeeccccchHHHHHHHhhhccchhhhh
Confidence 899999999999865 5667777777766653
No 72
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-27 Score=224.24 Aligned_cols=286 Identities=23% Similarity=0.313 Sum_probs=205.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..|||+||||||||-+||++++|+|.+.-++- +++||+.+-.-.| ..| ...+..+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a-erfGGQvldT~~I---------------------ENf---Isv~~te 264 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-ERFGGQVLDTMGI---------------------ENF---ISVPETE 264 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh-hhhCCeeccccch---------------------hhe---ecccccc
Confidence 45999999999999999999999999976663 4567765421000 000 0111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE--------EecCCEEEEccceEEEeCeEEEeCCCCCC---CCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT--------ILGPQKVKFGTDNIVTAKDIIIATGSVPF---VPKG 248 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--------~~~~~~v~~~~~~~~~~d~lViAtG~~p~---~p~~ 248 (556)
. .++...+....+.+.|++...... .-+-..|++.+|-.+.++.+|++||++.+ +|+.
T Consensus 265 G-----------pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE 333 (520)
T COG3634 265 G-----------PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGE 333 (520)
T ss_pred c-----------hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCch
Confidence 2 233344444455556655543221 11245788888999999999999999865 5555
Q ss_pred CCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEE
Q 008714 249 IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDY 328 (556)
Q Consensus 249 ~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~ 328 (556)
.++..+.+..|.++...-+.+|+|+|||||++|+|.|-.|+..-.+||+++-.+.+- .-+.+++.+..-.+|++
T Consensus 334 ~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~i 407 (520)
T COG3634 334 DEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVTI 407 (520)
T ss_pred HHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------hHHHHHHHHhcCCCcEE
Confidence 556677888888888888889999999999999999999998889999997555431 22456666666578999
Q ss_pred EcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc-CCCceeeCCCCccccCCC
Q 008714 329 HTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT-QRGFVPVDERMRVIDANG 407 (556)
Q Consensus 329 ~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~ 407 (556)
+.+..-++|.+++ .++..+++.|..+ ++.+.++-+-|++-+|..||+++|. .. ++. ++|.|.||.+..
T Consensus 408 i~na~Ttei~Gdg-~kV~Gl~Y~dr~s-ge~~~l~LeGvFVqIGL~PNT~WLk--g~-vel~~rGEIivD~~g~------ 476 (520)
T COG3634 408 ITNAQTTEVKGDG-DKVTGLEYRDRVS-GEEHHLELEGVFVQIGLLPNTEWLK--GA-VELNRRGEIIVDARGE------ 476 (520)
T ss_pred EecceeeEEecCC-ceecceEEEeccC-CceeEEEeeeeEEEEecccChhHhh--ch-hhcCcCccEEEecCCC------
Confidence 9999999998752 3445577776543 3346788899999999999999874 22 444 899999999998
Q ss_pred CcCCCEEEecccCCCC-CcHHHHHHHHHHHHH
Q 008714 408 NLVPHLYCIGDANGKM-MLAHAASAQGISVVE 438 (556)
Q Consensus 408 t~~~~Vya~GD~~~~~-~~~~~A~~qg~~aa~ 438 (556)
|++|+|||+|||+..| +....|+.+|..|+-
T Consensus 477 TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL 508 (520)
T COG3634 477 TNVPGVFAAGDCTTVPYKQIIIAMGEGAKASL 508 (520)
T ss_pred cCCCceeecCcccCCccceEEEEecCcchhhh
Confidence 8999999999998653 455555555544443
No 73
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.95 E-value=1.1e-25 Score=236.14 Aligned_cols=298 Identities=17% Similarity=0.203 Sum_probs=192.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCC--------chhhHhhhHHHHHhhhh-----hhh
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVP--------SKALLAVSGRMRELQSE-----HHM 166 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ip--------s~~l~~~~~~~~~~~~~-----~~~ 166 (556)
.++|+|||||++||+||++|++.|++|+|+|+ +.+||.|.+....+ .+...+ +..++.++.. ..+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~-s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVH-SSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccc-hhhhhhhhccCCHhhccC
Confidence 47899999999999999999999999999999 88999998654322 111111 1112222111 112
Q ss_pred hhcCcccc-------cccc-CHHHHHHHHHHHHHHHHHHHHHHHHHcCcE--EEeceEE-Ee----cCCEEEEccc----
Q 008714 167 KALGLQVH-------AAGY-DRQGVADHANNLATKIRNNLTNSMKALGVD--ILTGVGT-IL----GPQKVKFGTD---- 227 (556)
Q Consensus 167 ~~~g~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~-~~----~~~~v~~~~~---- 227 (556)
.++.+... .+.| .. .++.+++....+..++. +..++.+ .+ +.|.|.+.++
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~-----------~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~ 157 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSH-----------REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFS 157 (461)
T ss_pred CCCCCCcccccccCcCCCCCCH-----------HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCce
Confidence 22222110 0111 22 34555666666667776 5554432 22 2356665421
Q ss_pred eEEEeCeEEEeCC--CCCCCCCCCC---CCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 228 NIVTAKDIIIATG--SVPFVPKGIE---VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 228 ~~~~~d~lViAtG--~~p~~p~~~~---~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.+..||+||+||| +.|++|++++ +.|..+|+......-...+|+|+|||+|.+|+|+|..|...+.+|+++.|++
T Consensus 158 ~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 158 KDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 2467999999999 5688876554 4566677665554445678999999999999999999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCC
Q 008714 303 QLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGL 382 (556)
Q Consensus 303 ~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l 382 (556)
.+.. ..+ +.. ...++..+..|..+.. ++ .|.++|| +.+++|.||+|||++|+.++|.
T Consensus 238 ~~~~---------~~~-~~~-~~~~v~~~~~I~~~~~--~g---~V~f~DG------~~~~~D~Ii~~TGy~~~~pfL~- 294 (461)
T PLN02172 238 ESDT---------YEK-LPV-PQNNLWMHSEIDTAHE--DG---SIVFKNG------KVVYADTIVHCTGYKYHFPFLE- 294 (461)
T ss_pred cccc---------ccc-CcC-CCCceEECCcccceec--CC---eEEECCC------CCccCCEEEECCcCCccccccC-
Confidence 4311 011 111 2234455566665543 23 3788887 5688999999999999998764
Q ss_pred cccccccCCCceeeCCCC------ccccCCCCc-CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q 008714 383 ENINVVTQRGFVPVDERM------RVIDANGNL-VPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRD 444 (556)
Q Consensus 383 ~~~~~~~~~G~i~vd~~l------~~~~~~~t~-~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~g~~ 444 (556)
. .|.+.+|++. ++.. .. .|+++.+|=.. .......+..|++.+|.-+.|+.
T Consensus 295 -~------~~~i~v~~~~v~~Ly~~~f~---~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 295 -T------NGYMRIDENRVEPLYKHVFP---PALAPGLSFIGLPA-MGIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred -c------ccceeeCCCcchhhHHhhcC---CCCCCcEEEEeccc-cccCchhHHHHHHHHHHHHcCCC
Confidence 1 2334343321 1111 33 38999999653 23456678899999999988764
No 74
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.94 E-value=1.5e-25 Score=242.94 Aligned_cols=282 Identities=21% Similarity=0.272 Sum_probs=190.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+|+|||+||+||++|..|+++|++|+|+|+ +.+||.+.+. +|... +
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--ip~~~----------------------------~ 185 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG--IPAYR----------------------------L 185 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec--CCCcc----------------------------C
Confidence 456899999999999999999999999999999 7888865321 22111 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCC-CCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFV-PKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~-p~~~~~~~~~v~ 257 (556)
. .++.....+.+.+.|+++..+.....+ +.... ....||.||+|||+.+.. ++.++.....++
T Consensus 186 ~------------~~~~~~~l~~~~~~Gv~~~~~~~~~~~---~~~~~-~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~ 249 (564)
T PRK12771 186 P------------REVLDAEIQRILDLGVEVRLGVRVGED---ITLEQ-LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVL 249 (564)
T ss_pred C------------HHHHHHHHHHHHHCCCEEEeCCEECCc---CCHHH-HHhhCCEEEEeeCCCCCCcCCCCCCccCCcE
Confidence 0 111112223455679988877533111 11111 123589999999987432 233332222233
Q ss_pred cccccc------cCCCCCCeEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCC-CCCCCCHHHHHHHHHHHhCCCceEEE
Q 008714 258 TSDHAL------KLEFVPDWIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKIDYH 329 (556)
Q Consensus 258 t~~~~~------~~~~~~~~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~~gV~~~ 329 (556)
..-.++ .....+++++|+|+|.++++++..+.+++ .+|++++|.+. .++..+.++ .+. .+ .||+++
T Consensus 250 ~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~----~~a-~~-~GVki~ 323 (564)
T PRK12771 250 DAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI----EEA-LR-EGVEIN 323 (564)
T ss_pred EHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH----HHH-HH-cCCEEE
Confidence 221111 12335789999999999999999999998 78999998764 344443333 222 33 689999
Q ss_pred cCceEEEEEecCCCCeEEEEE---e------cCC---CCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeC
Q 008714 330 TGVFATKITPAKDGKPVTIEL---I------DAK---TKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVD 397 (556)
Q Consensus 330 ~~~~v~~i~~~~~g~~~~v~~---~------~g~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd 397 (556)
++..+.++..++++. +.+++ . +|. ..++..++++|.||+|+|+.|+..++. ...++..++|+|.||
T Consensus 324 ~~~~~~~i~~~~~~~-~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~-~~~gl~~~~G~i~vd 401 (564)
T PRK12771 324 WLRTPVEIEGDENGA-TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE-SVPGVEVGRGVVQVD 401 (564)
T ss_pred ecCCcEEEEcCCCCE-EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh-hccCcccCCCCEEeC
Confidence 999999998654332 22221 1 110 022335899999999999999987653 123444578999999
Q ss_pred C-CCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 398 E-RMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 398 ~-~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
+ +++ |++|||||+||+..++.+...|+.||+.||.+|.
T Consensus 402 ~~~~~------ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 402 PNFMM------TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred CCCcc------CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 8 465 8999999999999888999999999999999984
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=3.9e-25 Score=252.40 Aligned_cols=281 Identities=19% Similarity=0.179 Sum_probs=186.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
...+||+||||||||++||..|++.|++|+|||+ +.+||.+...... ...
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~-----------------------------~~g 211 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAET-----------------------------IDG 211 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccc-----------------------------cCC
Confidence 3468999999999999999999999999999999 7888876432100 000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEE-Ee-cCCEEE----------------E-ccceEEEeCeEEE
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGT-IL-GPQKVK----------------F-GTDNIVTAKDIII 237 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~-~~-~~~~v~----------------~-~~~~~~~~d~lVi 237 (556)
.+. .++...+.+.+... +++++.++.+ .. +...+. . +...++.||+|||
T Consensus 212 ~~~-----------~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VIL 280 (985)
T TIGR01372 212 KPA-----------ADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVL 280 (985)
T ss_pred ccH-----------HHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEE
Confidence 111 11111222333334 4888776432 11 111110 0 0112689999999
Q ss_pred eCCCCCCCCCCCCCCCCeEecccccccC----C-CCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCCCCCCCHH
Q 008714 238 ATGSVPFVPKGIEVDGKTVITSDHALKL----E-FVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQLMPGFDPE 311 (556)
Q Consensus 238 AtG~~p~~p~~~~~~~~~v~t~~~~~~~----~-~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~ll~~~d~~ 311 (556)
|||+.++.|++++.+...+++......+ . ..+++++|||+|++|+|+|..|.+.|. .|+++++.+.+
T Consensus 281 ATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------- 353 (985)
T TIGR01372 281 ATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------- 353 (985)
T ss_pred cCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------
Confidence 9999998887776665666665433221 1 246999999999999999999999995 57888776543
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCC
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQR 391 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~ 391 (556)
...+.+.+++ .||+++.++.++++..+ +....|++... .++.+++++|.|++++|++||++++......
T Consensus 354 -~~~l~~~L~~-~GV~i~~~~~v~~i~g~--~~v~~V~l~~~--~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~----- 422 (985)
T TIGR01372 354 -SPEARAEARE-LGIEVLTGHVVAATEGG--KRVSGVAVARN--GGAGQRLEADALAVSGGWTPVVHLFSQRGGK----- 422 (985)
T ss_pred -hHHHHHHHHH-cCCEEEcCCeEEEEecC--CcEEEEEEEec--CCceEEEECCEEEEcCCcCchhHHHHhcCCC-----
Confidence 2234556666 89999999999999764 33334555421 1123689999999999999999855221111
Q ss_pred CceeeCCCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 392 GFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 392 G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
+..|+...... ..|++|+||++||+++.. .+..|..+|+.||..++
T Consensus 423 --~~~~~~~~~~~-~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 423 --LAWDAAIAAFL-PGDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred --eeeccccCcee-cCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 22232211000 016789999999999765 56669999999998875
No 76
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=225.72 Aligned_cols=294 Identities=23% Similarity=0.232 Sum_probs=211.9
Q ss_pred HcCcEEEeceEE-Ee--cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCeEecccccccC------CCCCCeEEE
Q 008714 204 ALGVDILTGVGT-IL--GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKL------EFVPDWIAI 274 (556)
Q Consensus 204 ~~gv~~~~g~~~-~~--~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~v~t~~~~~~~------~~~~~~v~V 274 (556)
+.++++..+..+ .+ ..+.+.+.++ ++.||+||+|||+.|..++.... ..+++....... ....++++|
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v 141 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPPISDW--EGVVTLRLREDAEALKGGAEPPKDVVV 141 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCCcccc--CceEEECCHHHHHHHHHHHhccCeEEE
Confidence 457888886543 33 4677888877 89999999999999998772111 223322221111 112589999
Q ss_pred EcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEE-EEEec
Q 008714 275 VGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVT-IELID 352 (556)
Q Consensus 275 vG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~-v~~~~ 352 (556)
+|+|++|+|+|..+++.|.+|++++..+++++.+. +++.+.+.+.+++ +||+++++..+.+|+...+..... +...+
T Consensus 142 vG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~ 220 (415)
T COG0446 142 VGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEK-YGVELLLGTKVVGVEGKGNTLVVERVVGID 220 (415)
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHH-CCcEEEeCCceEEEEcccCcceeeEEEEeC
Confidence 99999999999999999999999999999999877 8999999999987 899999999999998753321111 34444
Q ss_pred CCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCc-CCCEEEecccCCC---------
Q 008714 353 AKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNL-VPHLYCIGDANGK--------- 422 (556)
Q Consensus 353 g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~-~~~Vya~GD~~~~--------- 422 (556)
+ ..+++|++++++|.+||+........+....+|+|.||++++ ++ .++|||+|||+..
T Consensus 221 ~------~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~------~~~~~~v~a~GD~~~~~~~~~~~~~ 288 (415)
T COG0446 221 G------EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGG------TSKDPDVYAAGDVAEIPAAETGKGG 288 (415)
T ss_pred C------cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccc------cCCCCCEEeccceEeeecccCCcee
Confidence 4 689999999999999997654322223445888999999999 55 8999999998632
Q ss_pred -CCcHHHHHHHHHHHHHHHhCCCccCCCCCccE--EEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhh-h
Q 008714 423 -MMLAHAASAQGISVVEQVTGRDHVLNHLSIPA--ACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKAL-A 498 (556)
Q Consensus 423 -~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~p~--~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~-~ 498 (556)
...++.+..++++++.++.+. ..+. ...+. .-.........|+++. ++ ..++ .+.........+.. .
T Consensus 289 ~~~~~~~a~~~~~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~g~~~~--~~----~~~~-~~~~~~~~~~~~~~~~ 359 (415)
T COG0446 289 RIALWAIAVAAGRIAAENIAGA-LRIP-GLLGTVISDVGDLCAASTGLTEG--KE----RGID-VVLVVSGGKDPRAHLY 359 (415)
T ss_pred eeechhhHhhhhHHHHHHhccc-cccc-cccCceEEEEcCeEEEEecCCcc--cc----ccee-eeEEEeccCccccccc
Confidence 236778999999999999877 3221 23333 3344567889999997 22 2555 33334444444444 3
Q ss_pred cCCcceEEEEEEcCCCCCccceEEE
Q 008714 499 ENEGEGLAKGVPRNFASSERTNQHS 523 (556)
Q Consensus 499 ~~~~~g~~kli~~~~~~~~~~g~~~ 523 (556)
.+......|++++. .+..++|.+.
T Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~~~~ 383 (415)
T COG0446 360 PGAELVGIKLVGDA-DTGRILGGQE 383 (415)
T ss_pred CCCCeEEEEEEEcC-cccceehhhh
Confidence 34444578888887 5677787776
No 77
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.91 E-value=3.2e-23 Score=220.17 Aligned_cols=321 Identities=16% Similarity=0.163 Sum_probs=169.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCC-CchhhHhhhHHHHHhhhhhhhhhcCcccccccc-
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCV-PSKALLAVSGRMRELQSEHHMKALGLQVHAAGY- 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~i-ps~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 178 (556)
.+|+|||||++||++|+.|.+.|++++++|| +.+||.|.+.... +...-.+.+-..........+.++.++.+.+.|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 4799999999999999999999999999999 8999999853211 101000000001111112235556666555544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE----EecCCEEEEcc-c--eEEEeCeEEEeCCCC--CCCCC--
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT----ILGPQKVKFGT-D--NIVTAKDIIIATGSV--PFVPK-- 247 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~----~~~~~~v~~~~-~--~~~~~d~lViAtG~~--p~~p~-- 247 (556)
...++.+|++.+++.+.. .+ .-+.+.++..-... ....|.|++.+ + ++..||+||+|||.. |++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L--~~-~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGL--RK-HIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp BHHHHHHHHHHHHHHTTG--GG-GEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CHHHHHHHHHHHHhhhCC--cc-eEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 556666777666655421 00 00112222211100 01246676643 2 346799999999964 66663
Q ss_pred C---CCCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC-CCCCCCH-----H-------
Q 008714 248 G---IEVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ-LMPGFDP-----E------- 311 (556)
Q Consensus 248 ~---~~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~-ll~~~d~-----~------- 311 (556)
. ..+.|..+|+.++.......+|+|+|||+|.+|+|+|..+++.+.+|++..|+.. ++|++.. +
T Consensus 159 ~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~ 238 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRF 238 (531)
T ss_dssp -CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------------------------
T ss_pred hhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccccc
Confidence 2 3366777777766666667899999999999999999999999999999888764 3443211 0
Q ss_pred -----------HHHHH-HHHHhC-------------------------------CCceEEEcCceEEEEEecCCCCeEEE
Q 008714 312 -----------IGKLA-QRVLIN-------------------------------PRKIDYHTGVFATKITPAKDGKPVTI 348 (556)
Q Consensus 312 -----------~~~~~-~~~l~~-------------------------------~~gV~~~~~~~v~~i~~~~~g~~~~v 348 (556)
+.+.+ .+.+.+ ...|.+. ..|.++++ -.+
T Consensus 239 ~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~------~~v 310 (531)
T PF00743_consen 239 SSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE------NSV 310 (531)
T ss_dssp ------------------------------------------------------------E--E-EEEE-S------SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc------ccc
Confidence 00100 000000 0111111 11222221 135
Q ss_pred EEecCCCCCCCce-EecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEecccCCCCCcHH
Q 008714 349 ELIDAKTKEPKDT-LEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMMLAH 427 (556)
Q Consensus 349 ~~~~g~~~~~~~~-i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~ 427 (556)
.|.|| .+ .++|.||+|||++....+|+.. -+...++.+....++-..+ -..|++..+|=+........
T Consensus 311 ~F~DG------s~~e~vD~II~~TGY~~~fpFL~~~--~~~~~~~~~~LYk~vfp~~---~~~ptLafIG~~~~~g~~fp 379 (531)
T PF00743_consen 311 IFEDG------STEEDVDVIIFCTGYKFSFPFLDES--LIKVDDNRVRLYKHVFPPN---LDHPTLAFIGLVQPFGSIFP 379 (531)
T ss_dssp EETTS------EEEEE-SEEEE---EE---TTB-TT--TT-S-SSSSSEETTTEETE---TTSTTEEESS-SBSSS-HHH
T ss_pred ccccc------ccccccccccccccccccccccccc--ccccccccccccccccccc---cccccccccccccccccccc
Confidence 67776 44 4799999999999988877532 1223344444545543211 13489999997654334567
Q ss_pred HHHHHHHHHHHHHhCCC
Q 008714 428 AASAQGISVVEQVTGRD 444 (556)
Q Consensus 428 ~A~~qg~~aa~~i~g~~ 444 (556)
.+..||+.+++-+.|+.
T Consensus 380 ~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 380 IFELQARWAARVFSGRV 396 (531)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccc
Confidence 79999999999988764
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.91 E-value=2.9e-24 Score=207.90 Aligned_cols=322 Identities=18% Similarity=0.162 Sum_probs=213.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHH--cCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccc
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVE--KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVH 174 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~--~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~ 174 (556)
.+.+...+|||+|.+..+++...+. .+.+|++|.. .++-- -.-.-||.|++..... ......+.+|.-...
T Consensus 175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPY----mRPPLSKELW~~~dpn--~~k~lrfkqwsGkeR 248 (659)
T KOG1346|consen 175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPY----MRPPLSKELWWYGDPN--SAKKLRFKQWSGKER 248 (659)
T ss_pred CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcc----cCCCcchhceecCCCC--hhhheeecccCCccc
Confidence 3456789999999999888655544 4788988864 22110 0001144444332211 001112222211111
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE---EecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCC
Q 008714 175 AAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT---ILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEV 251 (556)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~---~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~ 251 (556)
...|++..+.-.- +.+ .....-||.+..|..+ ....+.|.++||.+|.||+++||||.+|...+..+.
T Consensus 249 siffepd~Ffvsp----eDL-----p~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~ 319 (659)
T KOG1346|consen 249 SIFFEPDGFFVSP----EDL-----PKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEE 319 (659)
T ss_pred eeEecCCcceeCh----hHC-----cccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhh
Confidence 1112211111000 111 1223358999988754 234678899999999999999999999986543332
Q ss_pred CC-----C--eEecccccccCCCC---CCeEEEEcCchhHHHHHHHHHh----CCCeEEEEEeCCCCCCC-CCHHHHHHH
Q 008714 252 DG-----K--TVITSDHALKLEFV---PDWIAIVGSGYIGLEFSDVYTA----LGSEVTFIEALDQLMPG-FDPEIGKLA 316 (556)
Q Consensus 252 ~~-----~--~v~t~~~~~~~~~~---~~~v~VvG~G~~g~e~A~~l~~----~g~~Vtli~~~~~ll~~-~d~~~~~~~ 316 (556)
.+ + .++...++.++++. -++|.|||+|.+|.|+|..|.+ .|.+|+.+......|.. ++.-++++.
T Consensus 320 A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt 399 (659)
T KOG1346|consen 320 ASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWT 399 (659)
T ss_pred cCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHH
Confidence 22 1 23466666665442 3899999999999999998876 46788877655544544 456677777
Q ss_pred HHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc--CCCce
Q 008714 317 QRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT--QRGFV 394 (556)
Q Consensus 317 ~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~--~~G~i 394 (556)
.+.+++ .||.++.+..|.++.... +.+.+.+.|| .++..|+|++|+|-.||+++.. ..+++. +-|.+
T Consensus 400 ~ekir~-~GV~V~pna~v~sv~~~~--~nl~lkL~dG------~~l~tD~vVvavG~ePN~ela~--~sgLeiD~~lGGf 468 (659)
T KOG1346|consen 400 IEKIRK-GGVDVRPNAKVESVRKCC--KNLVLKLSDG------SELRTDLVVVAVGEEPNSELAE--ASGLEIDEKLGGF 468 (659)
T ss_pred HHHHHh-cCceeccchhhhhhhhhc--cceEEEecCC------CeeeeeeEEEEecCCCchhhcc--cccceeecccCcE
Confidence 788877 899999999998887643 3367889998 7999999999999999999764 444444 66889
Q ss_pred eeCCCCccccCCCCcCCCEEEecccCCC-------CC--cHHHHHHHHHHHHHHHhCCCccCCCCCc
Q 008714 395 PVDERMRVIDANGNLVPHLYCIGDANGK-------MM--LAHAASAQGISVVEQVTGRDHVLNHLSI 452 (556)
Q Consensus 395 ~vd~~l~~~~~~~t~~~~Vya~GD~~~~-------~~--~~~~A~~qg~~aa~~i~g~~~~~~~~~~ 452 (556)
.||..|+. ..|||++||++-. -+ -...|.-.|+.|++||.|-..++....+
T Consensus 469 rvnaeL~a-------r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsm 528 (659)
T KOG1346|consen 469 RVNAELKA-------RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSM 528 (659)
T ss_pred Eeeheeec-------ccceeeecchhhhhcccccceeccccccceeeceecccccccccCCccccce
Confidence 99999984 5899999998622 12 3445788999999999988776665553
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=2e-21 Score=201.08 Aligned_cols=288 Identities=19% Similarity=0.210 Sum_probs=199.1
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+|.|||+|||||+||..|++.|+.|+++|+ +..||...+. +|...+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG--IP~~kl----------------------------- 171 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG--IPDFKL----------------------------- 171 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec--Cchhhc-----------------------------
Confidence 37899999999999999999999999999999 8888876532 331110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEec
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVIT 258 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~t 258 (556)
..++.+...+.+++.|++++.+...-. .+++.+ ..-.||.+++|||+. |+..++++.+...++.
T Consensus 172 -----------~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~ 236 (457)
T COG0493 172 -----------PKDILDRRLELLERSGVEFKLNVRVGR---DITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAF 236 (457)
T ss_pred -----------cchHHHHHHHHHHHcCeEEEEcceECC---cCCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchH
Confidence 133445556677788999998764321 222222 223569999999986 6655666665545554
Q ss_pred cccccc------C---------CCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCC--CCCCCHHHHHHHHHHH
Q 008714 259 SDHALK------L---------EFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL--MPGFDPEIGKLAQRVL 320 (556)
Q Consensus 259 ~~~~~~------~---------~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~l--l~~~d~~~~~~~~~~l 320 (556)
.-+++. + ...+++++|||+|.++++++....+.|. +|+.+.+...- ...+.........+..
T Consensus 237 A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a 316 (457)
T COG0493 237 ALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSA 316 (457)
T ss_pred HHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhh
Confidence 432220 1 1123899999999999999999999995 78877522211 1111111223334444
Q ss_pred hCCCceEEEcCceEEEEEecCCCCeEEEEEec---CC------------CCCCCceEecCEEEEeeCCCCCCCCCCCccc
Q 008714 321 INPRKIDYHTGVFATKITPAKDGKPVTIELID---AK------------TKEPKDTLEVDAALIATGRAPFTNGLGLENI 385 (556)
Q Consensus 321 ~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~---g~------------~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~ 385 (556)
.+ .|+...+.....++..+++|++..+.+.. +. ..+++..+++|+|+.++|+.|+.........
T Consensus 317 ~e-eg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~ 395 (457)
T COG0493 317 GE-EGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEF 395 (457)
T ss_pred hh-cCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccccccccc
Confidence 44 78888888888899887777665443322 10 0234567899999999999888654322222
Q ss_pred cccc-CCCceeeCCCC-ccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 386 NVVT-QRGFVPVDERM-RVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 386 ~~~~-~~G~i~vd~~l-~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
++.. ..|.+.+|+.+ + |+.|++||.||+..+..+...|+.+|+.+++-|-
T Consensus 396 ~~~~~~~g~i~~~~~~~~------ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 396 GLKLDKRGRIKVDENLQQ------TSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccCCCCceeccccccc------ccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 3444 78999999998 6 8999999999999988899999999999998764
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.86 E-value=3.6e-20 Score=202.45 Aligned_cols=291 Identities=15% Similarity=0.122 Sum_probs=173.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhh--hhhhhhhcCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQ--SEHHMKALGLQVHA 175 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~--~~~~~~~~g~~~~~ 175 (556)
....+|+||||||||++||..|++.|++|+|+|+ ...|+..... -|-+.+......+.... ..-.+..+|++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~--~~i~~~~~~~~~L~er~p~~~GG~~~yGIp--- 455 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVH--KPIKFWHEYKNLLSERMPRGFGGVAEYGIT--- 455 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccc--cccchhhhhccchhhhccccCCcccccCcc---
Confidence 3567999999999999999999999999999998 4333321100 00000000000000000 00112233333
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCC-CCCCCCCCCCCC
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGS-VPFVPKGIEVDG 253 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~-~p~~p~~~~~~~ 253 (556)
+.+. ....+.+...++. .++.++.+...- ..++.++-....||.|+||||+ .|+.+++++.+.
T Consensus 456 --~R~~----------k~~l~~i~~il~~g~~v~~~~gv~lG---~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda 520 (1028)
T PRK06567 456 --VRWD----------KNNLDILRLILERNNNFKYYDGVALD---FNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEA 520 (1028)
T ss_pred --ccch----------HHHHHHHHHHHhcCCceEEECCeEEC---ccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccC
Confidence 1110 0011111111221 246665565311 1222222234679999999999 698888888777
Q ss_pred CeEecccccccCC--------------CCCCeEEEEcCchhHHHHHHHHHh-----------------------------
Q 008714 254 KTVITSDHALKLE--------------FVPDWIAIVGSGYIGLEFSDVYTA----------------------------- 290 (556)
Q Consensus 254 ~~v~t~~~~~~~~--------------~~~~~v~VvG~G~~g~e~A~~l~~----------------------------- 290 (556)
..+++..+++... ..+++|+|||||++|+|+|....+
T Consensus 521 ~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f 600 (1028)
T PRK06567 521 KGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEF 600 (1028)
T ss_pred CCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHH
Confidence 7787766533210 135799999999999999973221
Q ss_pred ----------------------CCCeEEEEEeCCC-CCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEE
Q 008714 291 ----------------------LGSEVTFIEALDQ-LMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVT 347 (556)
Q Consensus 291 ----------------------~g~~Vtli~~~~~-ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~ 347 (556)
.|. |+++.|+.. -+|...-+ .+.+.+.++ .||.++.+..+.+|..+++|+...
T Consensus 601 ~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~-~eEv~~A~e--EGV~f~~~~~P~~i~~d~~g~v~~ 676 (1028)
T PRK06567 601 IAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLN-HEELIYALA--LGVDFKENMQPLRINVDKYGHVES 676 (1028)
T ss_pred HHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCC-HHHHHHHHH--cCcEEEecCCcEEEEecCCCeEEE
Confidence 232 888888763 24543101 123444443 699999999999998766676665
Q ss_pred EEEec---------CCCC---------------CCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccc
Q 008714 348 IELID---------AKTK---------------EPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVI 403 (556)
Q Consensus 348 v~~~~---------g~~~---------------~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~ 403 (556)
+++.. |... +++.+++||.||+|+|..||+.... .+..+-
T Consensus 677 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~--------------~~~s~~-- 740 (1028)
T PRK06567 677 VEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE--------------DKYSYF-- 740 (1028)
T ss_pred EEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc--------------cccccc--
Confidence 65541 1111 1346899999999999999987531 001111
Q ss_pred cCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q 008714 404 DANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 404 ~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i~ 441 (556)
++.+++|+- +...|+.+|+.++.+|.
T Consensus 741 ----~d~~~~f~G--------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 741 ----GDCNPKYSG--------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ----cCCCCcccc--------HHHHHHHHHHhHHHHHH
Confidence 455677765 67789999999999984
No 81
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.84 E-value=4.2e-20 Score=173.80 Aligned_cols=303 Identities=17% Similarity=0.240 Sum_probs=186.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHHc-C-CeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEK-G-LKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~-g-~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
..++.|+|||||.+|++.|.++.++ + -+|.|||..+ .|+++.||.....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e-----------------------------~HyYQPgfTLvGg 87 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE-----------------------------DHYYQPGFTLVGG 87 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh-----------------------------hcccCcceEEecc
Confidence 4569999999999999999998876 4 3699999732 2444444443222
Q ss_pred ccCH-HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCC---CCCCCC-C
Q 008714 177 GYDR-QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPF---VPKGIE-V 251 (556)
Q Consensus 177 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~---~p~~~~-~ 251 (556)
.... ..-......++..=..|+.+..++. ..+.++|.+.+|++|+||++|||+|..-+ +++..+ +
T Consensus 88 Gl~~l~~srr~~a~liP~~a~wi~ekv~~f----------~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal 157 (446)
T KOG3851|consen 88 GLKSLDSSRRKQASLIPKGATWIKEKVKEF----------NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEAL 157 (446)
T ss_pred chhhhhhccCcccccccCCcHHHHHHHHhc----------CCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhc
Confidence 1100 0000000011111112222222221 13567888999999999999999998633 332111 2
Q ss_pred CCCeEe---ccccc-------ccC-------CCCCCeEEEEcCchhHHHHHH-HHHhCCC----eEEEEEeCCCCCCCCC
Q 008714 252 DGKTVI---TSDHA-------LKL-------EFVPDWIAIVGSGYIGLEFSD-VYTALGS----EVTFIEALDQLMPGFD 309 (556)
Q Consensus 252 ~~~~v~---t~~~~-------~~~-------~~~~~~v~VvG~G~~g~e~A~-~l~~~g~----~Vtli~~~~~ll~~~d 309 (556)
+-..+. +..+. ... .+....+-+.|+-.-.+.++. .|++.|. ++......+.++. .
T Consensus 158 ~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg--V 235 (446)
T KOG3851|consen 158 DTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG--V 235 (446)
T ss_pred cCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec--H
Confidence 222232 22111 111 112245667788888999885 4556663 3444444444443 4
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCccccccc
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVT 389 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~ 389 (556)
+.+++.+++..++ ++|++.....+.+|..++ +...++.-+ .-+...+++++++.+.+...+... +.++.+.+
T Consensus 236 k~Y~~AL~k~~~~-rni~vn~krnLiEV~~~~--~~AvFe~L~--kPG~t~ei~yslLHv~Ppms~pe~---l~~s~~ad 307 (446)
T KOG3851|consen 236 KHYADALEKVIQE-RNITVNYKRNLIEVRTND--RKAVFENLD--KPGVTEEIEYSLLHVTPPMSTPEV---LANSDLAD 307 (446)
T ss_pred HHHHHHHHHHHHh-cceEeeeccceEEEeccc--hhhHHHhcC--CCCceeEEeeeeeeccCCCCChhh---hhcCcccC
Confidence 6688888888876 899999888888887643 222233222 123446899999999887766544 35666777
Q ss_pred CCCceeeCC-CCccccCCCCcCCCEEEecccCCCCC--cHHHHHHHHHHHHHHHh----CCCccCCCCCccEE
Q 008714 390 QRGFVPVDE-RMRVIDANGNLVPHLYCIGDANGKMM--LAHAASAQGISVVEQVT----GRDHVLNHLSIPAA 455 (556)
Q Consensus 390 ~~G~i~vd~-~l~~~~~~~t~~~~Vya~GD~~~~~~--~~~~A~~qg~~aa~~i~----g~~~~~~~~~~p~~ 455 (556)
..||+.||. .+|+ +.+||||++|||.+.|. ++..+..|..++-+|+. |+.....|+++.+|
T Consensus 308 ktGfvdVD~~TlQs-----~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt~~ydGYtSC 375 (446)
T KOG3851|consen 308 KTGFVDVDQSTLQS-----KKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLTQVMQGKRPTMKYDGYTSC 375 (446)
T ss_pred cccceecChhhhcc-----ccCCCceeeccccCCCchhhHHHHHhcCchhhhhHHHHhcCCCcceeecCcccC
Confidence 899999996 5997 89999999999999886 44555577888888875 44433445555444
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.83 E-value=4.1e-20 Score=174.32 Aligned_cols=182 Identities=20% Similarity=0.281 Sum_probs=108.0
Q ss_pred EEECCChHHHHHHHHHHHcCCe-EEEecC-CcCCccccccCC-----CCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 105 IIIGAGVGGHGAALHAVEKGLK-TAIIEG-DVVGGTCVNRGC-----VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 105 vIIGgG~aGl~aA~~l~~~g~~-V~viEk-~~~GG~~~~~g~-----ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
+||||||+||++|.+|.+.|.+ ++|||+ +.+||.|....- .|+... ..++.+ ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~ 63 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFS----------------SDFGLP-DFES 63 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCT----------------GGSS---CCCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCcccc----------------ccccCC-cccc
Confidence 7999999999999999999999 999999 799999984321 111110 000000 0000
Q ss_pred cCHHHHHHHH----HHHHHHHHHHHHHHHHHcCcEEEeceEE-----EecCCEEEEccceEEEeCeEEEeCCC--CCCCC
Q 008714 178 YDRQGVADHA----NNLATKIRNNLTNSMKALGVDILTGVGT-----ILGPQKVKFGTDNIVTAKDIIIATGS--VPFVP 246 (556)
Q Consensus 178 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~gv~~~~g~~~-----~~~~~~v~~~~~~~~~~d~lViAtG~--~p~~p 246 (556)
+.......+. ....+++.+++....++.++++..+..+ ..+.+.|++.+++++.+|+||+|||. .|..|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 64 FSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp SCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred cccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 0000000000 0012445566677777778887766533 22467898888778999999999996 68777
Q ss_pred CCCC-CCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 247 KGIE-VDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 247 ~~~~-~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
+.++ .+...+++.+........+++|+|||+|.+|+|++..|.+.|.+|+++.|++.
T Consensus 144 ~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 144 DIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ccccccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 7665 34444444444333345679999999999999999999999999999999874
No 83
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=1.2e-19 Score=186.93 Aligned_cols=302 Identities=18% Similarity=0.160 Sum_probs=178.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCC-chhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVP-SKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ip-s~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
..+|+|||||+|||.+|+.|.+.|++++++|| +.+||.|.+..... -+.-++.+-..+..+....+.++.++...+.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 46999999999999999999999999999999 89999999653222 00001111111122222345555555443332
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEece--EE--E-e-cCCEEEEccc----eEEEeCeEEEeCCCC--CC
Q 008714 179 --DRQGVADHANNLATKIRNNLTNSMKALGVDILTGV--GT--I-L-GPQKVKFGTD----NIVTAKDIIIATGSV--PF 244 (556)
Q Consensus 179 --~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~--~~--~-~-~~~~v~~~~~----~~~~~d~lViAtG~~--p~ 244 (556)
+..++.+|++.+++.+... ..+..+. .. . . +.|.|...+. ++..+|.||+|||.. |+
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~---------~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLL---------KMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChh---------hheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCC
Confidence 3446666666666554311 1122222 11 1 2 3677776442 578899999999987 77
Q ss_pred CCCCC-----CCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHH
Q 008714 245 VPKGI-----EVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRV 319 (556)
Q Consensus 245 ~p~~~-----~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~ 319 (556)
+|..+ .+.|..+|+.++...-.+.+|+|+|||+|++|+|++..+++...+|++..+ . +.+. ......
T Consensus 157 ~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~---~~~~----~~~~~~ 228 (448)
T KOG1399|consen 157 IPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S---PKVH----VEPPEI 228 (448)
T ss_pred CCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-c---cccc----ccccce
Confidence 77432 356778888888766667789999999999999999999999999988865 1 0000 000000
Q ss_pred HhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCC
Q 008714 320 LINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDER 399 (556)
Q Consensus 320 l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~ 399 (556)
+. .++..+.. +..++. ++ .+.+.++ ....+|.||+|||+.-...+++-... +.++++
T Consensus 229 ~~--~~~~~~~~--i~~~~e--~~---~~~~~~~------~~~~~D~ii~ctgy~y~fPfl~~~~~--------~~~~~~ 285 (448)
T KOG1399|consen 229 LG--ENLWQVPS--IKSFTE--DG---SVFEKGG------PVERVDRIIFCTGYKYKFPFLETLGL--------GTVRDN 285 (448)
T ss_pred ee--cceEEccc--cccccC--cc---eEEEcCc------eeEEeeeEEEeeeeEeecceeccCCc--------eeeccC
Confidence 10 12222222 444433 22 2333443 57789999999999877665532111 122221
Q ss_pred C-ccccCCCCcCCCEEEecccCCCCC----cHHHHHHHHHHHHHHHhCCC
Q 008714 400 M-RVIDANGNLVPHLYCIGDANGKMM----LAHAASAQGISVVEQVTGRD 444 (556)
Q Consensus 400 l-~~~~~~~t~~~~Vya~GD~~~~~~----~~~~A~~qg~~aa~~i~g~~ 444 (556)
. ...- ..-.|..++-|......+ ..+....|++.++..+.|+.
T Consensus 286 ~~~pl~--k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~ 333 (448)
T KOG1399|consen 286 IVGPLY--KKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRL 333 (448)
T ss_pred cccchh--eeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCCC
Confidence 1 1000 022344455552221112 24456678888888887753
No 84
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.5e-19 Score=187.41 Aligned_cols=187 Identities=22% Similarity=0.266 Sum_probs=126.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCe-EEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLK-TAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAA 176 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~-V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 176 (556)
..++||+|||||++||++|++|+++|.. ++|+|| +.+||+|.+. +.|+-.+..... ...+..+.++....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~-ry~~l~~~~p~~-------~~~~~~~p~~~~~~ 77 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-RYPGLRLDSPKW-------LLGFPFLPFRWDEA 77 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc-cCCceEECCchh-------eeccCCCccCCccc
Confidence 4568999999999999999999999998 999999 7999998742 233222111100 01222222221111
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCc----EEEeceEE--Ee---cCCEEEEccceE--EEeCeEEEeCCC--CC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGV----DILTGVGT--IL---GPQKVKFGTDNI--VTAKDIIIATGS--VP 243 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv----~~~~g~~~--~~---~~~~v~~~~~~~--~~~d~lViAtG~--~p 243 (556)
......+..+ +...++.+++ .+.....+ .. ..|+|++.++.+ +.+|+||+|||. .|
T Consensus 78 ~~~~~~~~~y-----------~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P 146 (443)
T COG2072 78 FAPFAEIKDY-----------IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEP 146 (443)
T ss_pred CCCcccHHHH-----------HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCC
Confidence 1122222322 2333333333 23222222 11 257788876554 569999999995 47
Q ss_pred CCCCCC---CCCCCeEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 244 FVPKGI---EVDGKTVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 244 ~~p~~~---~~~~~~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
++|.++ .+.|..+|++++....+..+|+|+|||+|.+|++++..|.+.|.+||++.|++..
T Consensus 147 ~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 147 YIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 777544 4567788888888888899999999999999999999999999999999998753
No 85
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.78 E-value=3.7e-19 Score=167.47 Aligned_cols=141 Identities=31% Similarity=0.421 Sum_probs=85.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHHH
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (556)
||+|||||+||++||.+|++.+.+++|||+.. ..|....|++...+..........
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 56 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP--GTPYNSGCIPSPLLVEIAPHRHEF---------------------- 56 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS--HHHHHHSHHHHHHHHHHHHHHHHH----------------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc--cccccccccccccccccccccccc----------------------
Confidence 79999999999999999999999999998732 122233334433332221111100
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHcCcEEEe-ceEEE--ecCCE-------E---EEccceEEEeCeEEEeCCCCCCCCCC
Q 008714 183 VADHANNLATKIR-NNLTNSMKALGVDILT-GVGTI--LGPQK-------V---KFGTDNIVTAKDIIIATGSVPFVPKG 248 (556)
Q Consensus 183 ~~~~~~~~~~~~~-~~~~~~~~~~gv~~~~-g~~~~--~~~~~-------v---~~~~~~~~~~d~lViAtG~~p~~p~~ 248 (556)
.... ..+.+.+...++++.. ..+.. ..... + ...++.++.||+||+|||+.|+.|+.
T Consensus 57 ---------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 127 (201)
T PF07992_consen 57 ---------LPARLFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI 127 (201)
T ss_dssp ---------HHHHHGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred ---------ccccccccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence 0000 0222333446777733 33322 22231 1 22346789999999999999887765
Q ss_pred CCC----CCCeEecccccccCCCCCCeEEEEc
Q 008714 249 IEV----DGKTVITSDHALKLEFVPDWIAIVG 276 (556)
Q Consensus 249 ~~~----~~~~v~t~~~~~~~~~~~~~v~VvG 276 (556)
++. ....+.+++++......+++++|||
T Consensus 128 ~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 128 PGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp TTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred CCCccccccccccccccccccccccccccccc
Confidence 543 1244667777777666677999999
No 86
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.77 E-value=3.2e-18 Score=182.35 Aligned_cols=284 Identities=21% Similarity=0.253 Sum_probs=172.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
...+|.|||+|||||+||-+|-+.|+.|+|+|| +++||...+. +|... .
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg--ipnmk----------------------------l 1833 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG--IPNMK----------------------------L 1833 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec--CCccc----------------------------h
Confidence 457999999999999999999999999999999 8999965422 22110 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~ 257 (556)
| ..+.+.-.+.+...||++..++.. + +.+.++ .-.-.+|.+|+|+|+. |+-.|.++.+.+.++
T Consensus 1834 d------------k~vv~rrv~ll~~egi~f~tn~ei--g-k~vs~d-~l~~~~daiv~a~gst~prdlpv~grd~kgv~ 1897 (2142)
T KOG0399|consen 1834 D------------KFVVQRRVDLLEQEGIRFVTNTEI--G-KHVSLD-ELKKENDAIVLATGSTTPRDLPVPGRDLKGVH 1897 (2142)
T ss_pred h------------HHHHHHHHHHHHhhCceEEeeccc--c-ccccHH-HHhhccCeEEEEeCCCCCcCCCCCCccccccH
Confidence 1 112222334566779999876532 1 223332 2345799999999987 776676666655553
Q ss_pred ccccc---------------ccCCCCCCeEEEEcCchhHHHHHHHHHhCCC-eEEEEEeCCCC---------CCCCC---
Q 008714 258 TSDHA---------------LKLEFVPDWIAIVGSGYIGLEFSDVYTALGS-EVTFIEALDQL---------MPGFD--- 309 (556)
Q Consensus 258 t~~~~---------------~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~-~Vtli~~~~~l---------l~~~d--- 309 (556)
-.-++ ..+...+|+|+|||||.+|-++...-.+.|. .|.-++--+.. +|.++
T Consensus 1898 fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvf 1977 (2142)
T KOG0399|consen 1898 FAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVF 1977 (2142)
T ss_pred HHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEE
Confidence 22111 1123357999999999999998877777774 34433322211 12111
Q ss_pred -HHHH-HHHHHHHhCCCceEEEcCceE-EEEEecCCCCe-----EEEEEecC--------CCCCCCceEecCEEEEeeCC
Q 008714 310 -PEIG-KLAQRVLINPRKIDYHTGVFA-TKITPAKDGKP-----VTIELIDA--------KTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 310 -~~~~-~~~~~~l~~~~gV~~~~~~~v-~~i~~~~~g~~-----~~v~~~~g--------~~~~~~~~i~~D~vi~a~G~ 373 (556)
-++. ..+++. .|-..+..+.. +++.++++|.+ +.|+.+.. +..+.++.+++|+||++.|+
T Consensus 1978 rvdygh~e~~~~----~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf 2053 (2142)
T KOG0399|consen 1978 RVDYGHAEAKEH----YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGF 2053 (2142)
T ss_pred EeecchHHHHHH----hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccc
Confidence 1111 112222 22222221111 12222222221 22222111 01234578999999999999
Q ss_pred CCCCCCCCCccccccc-CCCceeeC-CCCccccCCCCcCCCEEEecccCCCCCcHHHHHHHHHHHHHHH
Q 008714 374 APFTNGLGLENINVVT-QRGFVPVD-ERMRVIDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQV 440 (556)
Q Consensus 374 ~p~~~~l~l~~~~~~~-~~G~i~vd-~~l~~~~~~~t~~~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i 440 (556)
...-..+ .+..+++. .++.|..- +.+. |++++|||+|||-.+-.+..+|+++|+.+|+.+
T Consensus 2054 ~gpe~~~-~~~~~~~~d~rsni~t~~~~y~------t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2054 VGPEKSV-IEQLNLKTDPRSNILTPKDSYS------TDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred cCcchhh-hhhcCcccCccccccCCCcccc------ccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 7544322 24445554 55556553 2344 789999999999988889999999999999876
No 87
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.76 E-value=1.2e-17 Score=168.52 Aligned_cols=256 Identities=23% Similarity=0.284 Sum_probs=131.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcCC---ccccc-----cCC--------CCchhhHhhhHHHHHhhh
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVG---GTCVN-----RGC--------VPSKALLAVSGRMRELQS 162 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~G---G~~~~-----~g~--------ips~~l~~~~~~~~~~~~ 162 (556)
.+|+|+||.||++|+.|+.|.+.+ .+++.+|+ +.+. |..+. ... -|...+ .....+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~----sflnYL~~ 77 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPF----SFLNYLHE 77 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTT----SHHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcc----cHHHHHHH
Confidence 489999999999999999999986 99999998 4321 11110 000 011110 00111111
Q ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee----c----CCEEEE----ccceE
Q 008714 163 EHHMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----G----PQKVKF----GTDNI 229 (556)
Q Consensus 163 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~----~----~~~v~~----~~~~~ 229 (556)
...+..|-. .....+.. .++.+++.-..++..-.+..+..+ .+ + .+.|.+ +++..
T Consensus 78 ~~rl~~f~~-~~~~~p~R-----------~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~ 145 (341)
T PF13434_consen 78 HGRLYEFYN-RGYFFPSR-----------REFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGET 145 (341)
T ss_dssp TT-HHHHHH-H--SS-BH-----------HHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEE
T ss_pred cCChhhhhh-cCCCCCCH-----------HHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeE
Confidence 111111100 00011122 233333322222233324444332 11 2 256776 24678
Q ss_pred EEeCeEEEeCCCCCCCCCCCC-CCC-CeE-ecccccccC--CCCCCeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCC
Q 008714 230 VTAKDIIIATGSVPFVPKGIE-VDG-KTV-ITSDHALKL--EFVPDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALD 302 (556)
Q Consensus 230 ~~~d~lViAtG~~p~~p~~~~-~~~-~~v-~t~~~~~~~--~~~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~ 302 (556)
+.+++||+|||..|.+|+... ..+ ..+ |+++..... ...+++|+|||||.+|.|++..|.+.+ .+|+++.|++
T Consensus 146 ~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 146 YRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp EEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred EEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 999999999999999997444 332 444 455544443 346799999999999999999999887 4899999998
Q ss_pred CCCCC---------CCHHHH-------------------------------HHH-----HHHHhCCCceEEEcCceEEEE
Q 008714 303 QLMPG---------FDPEIG-------------------------------KLA-----QRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 303 ~ll~~---------~d~~~~-------------------------------~~~-----~~~l~~~~gV~~~~~~~v~~i 337 (556)
.+.|. |+|+.. +.+ ++.+.....+.++.++.|+.+
T Consensus 226 ~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~ 305 (341)
T PF13434_consen 226 GFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSA 305 (341)
T ss_dssp S-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEE
T ss_pred ccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEE
Confidence 77542 233322 111 111222246889999999999
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
+..+++ .+.+++.+...+ +..++++|.||+|||++
T Consensus 306 ~~~~~~-~~~l~~~~~~~~-~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 306 EQDGDG-GVRLTLRHRQTG-EEETLEVDAVILATGYR 340 (341)
T ss_dssp EEES-S-SEEEEEEETTT---EEEEEESEEEE---EE
T ss_pred EECCCC-EEEEEEEECCCC-CeEEEecCEEEEcCCcc
Confidence 987543 477888775433 34688999999999975
No 88
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.75 E-value=2.1e-17 Score=151.78 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=119.0
Q ss_pred cCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCCCCe--EecccccccCC---CCCCeEEEEcCchhHHHHHHHHHhCC
Q 008714 218 GPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVDGKT--VITSDHALKLE---FVPDWIAIVGSGYIGLEFSDVYTALG 292 (556)
Q Consensus 218 ~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~~~~--v~t~~~~~~~~---~~~~~v~VvG~G~~g~e~A~~l~~~g 292 (556)
..+.+.+.+|.++.|++|++|||++|...-.. .+..- +.+.+....+. ...|.|+|+|.|-+++|++.++. +
T Consensus 79 ~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~-~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~ 155 (334)
T KOG2755|consen 79 SEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEG-INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--I 155 (334)
T ss_pred ccceEEecCCceeeEEEEEEecCCCcceeecC-CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--c
Confidence 35677888899999999999999998765322 12111 12333333332 34699999999999999999986 4
Q ss_pred CeEEEEEeCCCCCCC-CCHHHHHHHHHHHhC---CCc--------eEEEcCceE-----------------EEEEecCCC
Q 008714 293 SEVTFIEALDQLMPG-FDPEIGKLAQRVLIN---PRK--------IDYHTGVFA-----------------TKITPAKDG 343 (556)
Q Consensus 293 ~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~---~~g--------V~~~~~~~v-----------------~~i~~~~~g 343 (556)
.+|+|....+.+-.. |||.+.+.+...+.. .+- ++.+.++.- ..+... ..
T Consensus 156 ~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~es-ee 234 (334)
T KOG2755|consen 156 LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISES-EN 234 (334)
T ss_pred ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhh-hh
Confidence 689998888777655 677766655544410 001 111111000 000000 00
Q ss_pred Ce------EEEEEecC----------CCCCCCceEecCEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCC
Q 008714 344 KP------VTIELIDA----------KTKEPKDTLEVDAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANG 407 (556)
Q Consensus 344 ~~------~~v~~~~g----------~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~ 407 (556)
+. ..+...+. ..+.....+.+|.+++++|..||.+.. ..+.--..++|.+.||+.|+
T Consensus 235 r~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~-~~~~lq~~edggikvdd~m~------ 307 (334)
T KOG2755|consen 235 RSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWA-MNKMLQITEDGGIKVDDAME------ 307 (334)
T ss_pred hhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEE-ecChhhhccccCeeehhhcc------
Confidence 00 00011110 011223467799999999999999833 22221123788899999999
Q ss_pred CcCCCEEEecccCC
Q 008714 408 NLVPHLYCIGDANG 421 (556)
Q Consensus 408 t~~~~Vya~GD~~~ 421 (556)
|+.|++||+||++.
T Consensus 308 tslpdvFa~gDvct 321 (334)
T KOG2755|consen 308 TSLPDVFAAGDVCT 321 (334)
T ss_pred ccccceeeecceec
Confidence 79999999999975
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.75 E-value=2.3e-16 Score=162.79 Aligned_cols=163 Identities=21% Similarity=0.210 Sum_probs=118.9
Q ss_pred EEEEcCchhHHHHH-HHHH----hCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeE
Q 008714 272 IAIVGSGYIGLEFS-DVYT----ALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPV 346 (556)
Q Consensus 272 v~VvG~G~~g~e~A-~~l~----~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~ 346 (556)
=+|++.+.+|+|++ ..+. ++|.+|+++...+..+|.. ++.+.+.+.+++ .|++++.++.+.+++..+ +...
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~-~Gv~I~~g~~V~~v~~~~-~~V~ 293 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFER-LGGRIMPGDEVLGAEFEG-GRVT 293 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHh-CCCEEEeCCEEEEEEEeC-CEEE
Confidence 37889999999999 7775 5799999999998888864 788888888887 899999999999998653 3332
Q ss_pred EEEEecCCCCCCCceEecCEEEEeeCCCCCCCC-------------CCCcccc-------------ccc-CCCceeeCCC
Q 008714 347 TIELIDAKTKEPKDTLEVDAALIATGRAPFTNG-------------LGLENIN-------------VVT-QRGFVPVDER 399 (556)
Q Consensus 347 ~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~-------------l~l~~~~-------------~~~-~~G~i~vd~~ 399 (556)
.+...++ ....+++|.+|+|+|+.++..+ |++.... -.. .-| |.+|++
T Consensus 294 ~v~~~~g----~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~G-V~~d~~ 368 (422)
T PRK05329 294 AVWTRNH----GDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFG-VATDAT 368 (422)
T ss_pred EEEeeCC----ceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcC-ceECCC
Confidence 2332222 2356899999999998765432 1110000 001 223 788988
Q ss_pred CccccC-CCCcCCCEEEecccCCCCCcH------HHHHHHHHHHHHHHhCC
Q 008714 400 MRVIDA-NGNLVPHLYCIGDANGKMMLA------HAASAQGISVVEQVTGR 443 (556)
Q Consensus 400 l~~~~~-~~t~~~~Vya~GD~~~~~~~~------~~A~~qg~~aa~~i~g~ 443 (556)
||..|. +++.++||||+|++.+++..+ -+|+..|..|+++|...
T Consensus 369 ~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 369 LRPLDSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred cCcccCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 887433 346799999999999887654 47889999999988743
No 90
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=1.9e-15 Score=148.44 Aligned_cols=330 Identities=19% Similarity=0.201 Sum_probs=193.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcC---CccccccCC--------------CCchhhHhhhHHHHH
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVV---GGTCVNRGC--------------VPSKALLAVSGRMRE 159 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~---GG~~~~~g~--------------ips~~l~~~~~~~~~ 159 (556)
+..+|++.||-||+-|+.|+.|.+.+ ++.+.+|| +.+ .|..+ .++ -|+..+ ..+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmll-egstlQv~FlkDLVTl~~PTs~y----SFLNY 77 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLL-EGSTLQVPFLKDLVTLVDPTSPY----SFLNY 77 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCccc-CCccccccchhhhccccCCCCch----HHHHH
Confidence 34589999999999999999999984 88999998 432 22222 111 122221 11222
Q ss_pred hhhhhhhhhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec-CC--EEEEccceEEEeCeEE
Q 008714 160 LQSEHHMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-PQ--KVKFGTDNIVTAKDII 236 (556)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~-~~--~v~~~~~~~~~~d~lV 236 (556)
++...++..|-.- ....+.+.+..+|.+.....+ ..+ +.|-+|..=....-+ .. .+.+.++..++++.||
T Consensus 78 L~~h~RLy~Fl~~-e~f~i~R~Ey~dY~~Waa~~l-~~~-----rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lV 150 (436)
T COG3486 78 LHEHGRLYEFLNY-ETFHIPRREYNDYCQWAASQL-PSL-----RFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLV 150 (436)
T ss_pred HHHcchHhhhhhh-hcccccHHHHHHHHHHHHhhC-Ccc-----ccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEE
Confidence 2222222222110 011122333333333333222 100 112222210000011 11 2445556689999999
Q ss_pred EeCCCCCCCCC-CCCCCCCeE-ecccccccCCCC-C-CeEEEEcCchhHHHHHHHHHhC----CCeEEEEEeCCCCCCC-
Q 008714 237 IATGSVPFVPK-GIEVDGKTV-ITSDHALKLEFV-P-DWIAIVGSGYIGLEFSDVYTAL----GSEVTFIEALDQLMPG- 307 (556)
Q Consensus 237 iAtG~~p~~p~-~~~~~~~~v-~t~~~~~~~~~~-~-~~v~VvG~G~~g~e~A~~l~~~----g~~Vtli~~~~~ll~~- 307 (556)
|++|..|.+|+ ...+.+..+ |+++.+.....+ . ++|+|||+|.+|.|+-..|... ..++.|+.|+..++|.
T Consensus 151 lg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d 230 (436)
T COG3486 151 LGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMD 230 (436)
T ss_pred EccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccc
Confidence 99999999997 334555444 555555444332 3 4599999999999999888653 3568899999888763
Q ss_pred --------CCHHHHHHH-----------------------------------HHHHh-CCCceEEEcCceEEEEEecCCC
Q 008714 308 --------FDPEIGKLA-----------------------------------QRVLI-NPRKIDYHTGVFATKITPAKDG 343 (556)
Q Consensus 308 --------~d~~~~~~~-----------------------------------~~~l~-~~~gV~~~~~~~v~~i~~~~~g 343 (556)
|.|++.+++ ++.+. .+..|.++.++.+..++..++|
T Consensus 231 ~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g 310 (436)
T COG3486 231 YSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDG 310 (436)
T ss_pred cchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCc
Confidence 233333211 11111 1357899999999999987666
Q ss_pred CeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC-CCCCccccccc-CCCceeeCCCCccccCCCCcCCCEEEecccC-
Q 008714 344 KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN-GLGLENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDAN- 420 (556)
Q Consensus 344 ~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~-~l~l~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~- 420 (556)
+ +.+.+....+++ ..+++.|.||+|||++.... ++..-...+.. +.|...|+..+++... +.....||+.|-+.
T Consensus 311 ~-~~l~~~~~~~~~-~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~-~~~~~~ifvqn~e~h 387 (436)
T COG3486 311 R-YRLTLRHHETGE-LETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWD-GPGKGRIFVQNAELH 387 (436)
T ss_pred e-EEEEEeeccCCC-ceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecC-CCCcceEEEeccccc
Confidence 5 777776654333 36888999999999985554 33211112233 7788999988776321 12334799999774
Q ss_pred ----CCCCcHHHHHHHHHHHHHHHhCCC
Q 008714 421 ----GKMMLAHAASAQGISVVEQVTGRD 444 (556)
Q Consensus 421 ----~~~~~~~~A~~qg~~aa~~i~g~~ 444 (556)
+.|.+.-.|.+.+.+ ++.++|..
T Consensus 388 tHGig~pdLsl~a~Raa~I-~~~L~g~~ 414 (436)
T COG3486 388 THGIGAPDLSLGAWRAAVI-LNSLLGRE 414 (436)
T ss_pred ccccCCccchHHHHHHHHH-HHHHhCcC
Confidence 336677777776654 45566654
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.68 E-value=1.5e-14 Score=148.98 Aligned_cols=264 Identities=14% Similarity=0.144 Sum_probs=149.7
Q ss_pred ccEEEECCChHHHHHHHHHH-HcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 102 YDLIIIGAGVGGHGAALHAV-EKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~-~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
.+|+||||||||++||.+|. +.|++|+|+|+ +.+||.+.+ |..|.+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~-GVaPdh~------------------------------ 88 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY-GVAPDHI------------------------------ 88 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE-eCCCCCc------------------------------
Confidence 57999999999999999765 67999999999 888887653 2222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCC------------
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPK------------ 247 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~------------ 247 (556)
. .+.+...+...+...+++++.+. . ++ ..++.++ ..-.||.||+|+|+.+..++
T Consensus 89 --~--------~k~v~~~f~~~~~~~~v~f~gnv-~-VG-~Dvt~ee-L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~G 154 (506)
T PTZ00188 89 --H--------VKNTYKTFDPVFLSPNYRFFGNV-H-VG-VDLKMEE-LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSG 154 (506)
T ss_pred --c--------HHHHHHHHHHHHhhCCeEEEeee-E-ec-CccCHHH-HHhcCCEEEEEcCCCCCCCCcccccceeeecc
Confidence 0 02223333333444677776321 1 11 1222222 22489999999999865444
Q ss_pred CCCCC--CCeEecccccc-------------cCC------CCCCeEEEEcCchhHHHHHHHHH-----------------
Q 008714 248 GIEVD--GKTVITSDHAL-------------KLE------FVPDWIAIVGSGYIGLEFSDVYT----------------- 289 (556)
Q Consensus 248 ~~~~~--~~~v~t~~~~~-------------~~~------~~~~~v~VvG~G~~g~e~A~~l~----------------- 289 (556)
+.+.. -..+++..++. ... ...++++|||+|++|+++|..|.
T Consensus 155 Ge~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~ 234 (506)
T PTZ00188 155 GETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLK 234 (506)
T ss_pred ccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHH
Confidence 22111 11233332221 111 02378999999999999998753
Q ss_pred ---hCC-CeEEEEEeCCCC--------------CCC----CCH-H-----------------------HHHHHHHHHh--
Q 008714 290 ---ALG-SEVTFIEALDQL--------------MPG----FDP-E-----------------------IGKLAQRVLI-- 321 (556)
Q Consensus 290 ---~~g-~~Vtli~~~~~l--------------l~~----~d~-~-----------------------~~~~~~~~l~-- 321 (556)
+.+ .+|+++-|+... ++. +++ + ..+.+.+...
T Consensus 235 ~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~ 314 (506)
T PTZ00188 235 VIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVE 314 (506)
T ss_pred HHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhc
Confidence 223 468888877522 111 000 0 1112333321
Q ss_pred -------CCCceEEEcCceEEEEEecCCCCeEEEEEecCC-------CCCCCceEecCEEEEeeCCCCCCCCCCCccccc
Q 008714 322 -------NPRKIDYHTGVFATKITPAKDGKPVTIELIDAK-------TKEPKDTLEVDAALIATGRAPFTNGLGLENINV 387 (556)
Q Consensus 322 -------~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-------~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~ 387 (556)
..+.+.+++...+.+|.+. ++++..+++.... ..++.+++++|+|+-++|++...- +. +
T Consensus 315 ~~~~~~~~~r~i~l~F~~sP~ei~~~-~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~----~g--~ 387 (506)
T PTZ00188 315 KNKEFYKTYKIIEFIFYFEIRQIRPI-DGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF----AE--N 387 (506)
T ss_pred cCccCCCCceEEEEEccCCceEEECC-CCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC----CC--C
Confidence 1145788888888888863 3555556665211 122346799999999999976531 11 1
Q ss_pred ccCCCceeeCCCCccccCCCCcCCCEEEecccCCCC
Q 008714 388 VTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM 423 (556)
Q Consensus 388 ~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~ 423 (556)
.++.. +.. ...++. +..|++|++|=+-.+|
T Consensus 388 pFd~~-~~n-~~grv~----~~~~g~Y~~GWiKrGP 417 (506)
T PTZ00188 388 LYNQS-VQM-FKEDIG----QHKFAIFKAGWFDKGP 417 (506)
T ss_pred Ccccc-CCC-CCCccc----CCCCCcEEeeecCcCC
Confidence 11211 211 112221 1369999999775444
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.66 E-value=1.3e-15 Score=151.48 Aligned_cols=201 Identities=18% Similarity=0.217 Sum_probs=123.2
Q ss_pred EEEeCeEEEeCCCCCCCCCCCCCCCC----eEecccccccC----------------CCCCCeEEEE---cCch-----h
Q 008714 229 IVTAKDIIIATGSVPFVPKGIEVDGK----TVITSDHALKL----------------EFVPDWIAIV---GSGY-----I 280 (556)
Q Consensus 229 ~~~~d~lViAtG~~p~~p~~~~~~~~----~v~t~~~~~~~----------------~~~~~~v~Vv---G~G~-----~ 280 (556)
++..-.+|+|||-.++-+......|. .++|.-++.++ -+.||+|+.| |+-. .
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCCh
Confidence 57788999999988764432221121 23443332222 1357888765 6544 1
Q ss_pred ---------HHHHHHHHHhC--CCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEE
Q 008714 281 ---------GLEFSDVYTAL--GSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIE 349 (556)
Q Consensus 281 ---------g~e~A~~l~~~--g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~ 349 (556)
++.-|...++. ..+|+++.-.-+-.. ..+.++..+.-++ .||+++.+ ++.+|...++++ +.|.
T Consensus 378 YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG---~~yEefY~~~Q~~-~gV~fIRG-rvaei~e~p~~~-l~V~ 451 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFG---KDYEEFYVRSQED-YGVRFIRG-RVAEIAEFPKKK-LIVR 451 (622)
T ss_pred hhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccC---ccHHHHHHhhhhh-hchhhhcC-ChHHheeCCCCe-eEEE
Confidence 22233334433 367888876544333 3333444444334 89999988 455666654444 5566
Q ss_pred EecCCCCCCCceEecCEEEEeeCCCCCCCCCC-Cccccccc-CCCceeeC-CCCccccCCCCcCCCEEEecccCCCCCcH
Q 008714 350 LIDAKTKEPKDTLEVDAALIATGRAPFTNGLG-LENINVVT-QRGFVPVD-ERMRVIDANGNLVPHLYCIGDANGKMMLA 426 (556)
Q Consensus 350 ~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~-l~~~~~~~-~~G~i~vd-~~l~~~~~~~t~~~~Vya~GD~~~~~~~~ 426 (556)
..|.- .+...++++|+|++++|..|....-. -..+|+.. +.||++-. +.++..+ ++.+|||.+|- +.+|+-.
T Consensus 452 ~EdTl-~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~---s~~~GIflAG~-aqgPkdI 526 (622)
T COG1148 452 VEDTL-TGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVD---SNRDGIFLAGA-AQGPKDI 526 (622)
T ss_pred EEecc-CccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCccccc---ccCCcEEEeec-ccCCccH
Confidence 55542 22447899999999999998654211 12334444 78888776 6788777 88999999994 5557888
Q ss_pred HHHHHHHHHHHHHH
Q 008714 427 HAASAQGISVVEQV 440 (556)
Q Consensus 427 ~~A~~qg~~aa~~i 440 (556)
..+..||..||...
T Consensus 527 ~~siaqa~aAA~kA 540 (622)
T COG1148 527 ADSIAQAKAAAAKA 540 (622)
T ss_pred HHHHHHhHHHHHHH
Confidence 88888888776543
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.59 E-value=1.5e-13 Score=135.61 Aligned_cols=140 Identities=24% Similarity=0.363 Sum_probs=87.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC--------CccccccCCCCchhhHhhh-----------HHHHH
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV--------GGTCVNRGCVPSKALLAVS-----------GRMRE 159 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~--------GG~~~~~g~ips~~l~~~~-----------~~~~~ 159 (556)
+.+||+|||||||||.||+.+++.|.+|+|||+ +.+ ||.|+.....+...++... ..+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 358999999999999999999999999999998 555 5778744332222221111 11111
Q ss_pred hhhhhhhhhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ec--CCEEEEccceEEEeCe
Q 008714 160 LQSEHHMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LG--PQKVKFGTDNIVTAKD 234 (556)
Q Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~--~~~v~~~~~~~~~~d~ 234 (556)
..-...+..+|+.......- ++. ........+.+.+...+++.||+++....+. .+ ...+.+.++.++.+|.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~G--r~F-p~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLG--RMF-PDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred HHHHHHHHhcCCeeEEccCc--eec-CCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 11113344455442211000 000 0001235566777788899999999987652 12 4677778887899999
Q ss_pred EEEeCCCC
Q 008714 235 IIIATGSV 242 (556)
Q Consensus 235 lViAtG~~ 242 (556)
||+|||..
T Consensus 159 lilAtGG~ 166 (408)
T COG2081 159 LILATGGK 166 (408)
T ss_pred EEEecCCc
Confidence 99999943
No 94
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.58 E-value=8.1e-15 Score=123.43 Aligned_cols=85 Identities=32% Similarity=0.472 Sum_probs=77.9
Q ss_pred ccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEEeccccchhhhcCCcceEEEEEEcCCCCCccceEEEeCCCchHH
Q 008714 452 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKGVPRNFASSERTNQHSDRPSKPNL 531 (556)
Q Consensus 452 ~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~~~~g~~~~g~~~~~~ 531 (556)
+|+++|++|++++||+||+||+++ |+++.+.++++..+.|+.+.++++||+||++|+ .+++|||+|++|+.+.++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~----g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~-~t~~IlGa~~vg~~a~e~ 75 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQ----GIDYEVVTVPFKSNDRARYYPETEGFVKLIFDK-KTGRILGAQIVGPNASEL 75 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHH----TSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEET-TTTBEEEEEEEETTHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhc----cCceeeeeecccccchhcccCCcceeeEEEEEe-eccceeeeeeecCchHHH
Confidence 589999999999999999999986 889999999999999999999999999999999 689999999999999999
Q ss_pred HHHHHHhhhc
Q 008714 532 VKKLADVYMT 541 (556)
Q Consensus 532 ~~~l~~~~~~ 541 (556)
|+.++.+...
T Consensus 76 I~~~~~ai~~ 85 (110)
T PF02852_consen 76 INELALAIQN 85 (110)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9998776443
No 95
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.56 E-value=2e-13 Score=132.31 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=90.4
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCcccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGY 178 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 178 (556)
+.|+|||+||||+++|..|.+. ++.|.|+|+ +.++|.. ..|..|.+...
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv-RyGVAPDHpEv--------------------------- 72 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV-RYGVAPDHPEV--------------------------- 72 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee-eeccCCCCcch---------------------------
Confidence 4799999999999999999985 699999999 7777643 33444432211
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC-CCCCCCCCCCCCeEe
Q 008714 179 DRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV-PFVPKGIEVDGKTVI 257 (556)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~-p~~p~~~~~~~~~v~ 257 (556)
......+...++.....++-+... ...+.+.+ .+-.||.||+|.|+. ++...+++.+-..++
T Consensus 73 -------------KnvintFt~~aE~~rfsf~gNv~v---G~dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~ 135 (468)
T KOG1800|consen 73 -------------KNVINTFTKTAEHERFSFFGNVKV---GRDVSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSGVI 135 (468)
T ss_pred -------------hhHHHHHHHHhhccceEEEeccee---cccccHHH-HhhcccEEEEEecCCCCcccCCCCcccccce
Confidence 111111222233333333322110 11222222 345799999999987 666666665555677
Q ss_pred cccccccC------------CCCCCeEEEEcCchhHHHHHHHHH
Q 008714 258 TSDHALKL------------EFVPDWIAIVGSGYIGLEFSDVYT 289 (556)
Q Consensus 258 t~~~~~~~------------~~~~~~v~VvG~G~~g~e~A~~l~ 289 (556)
+...+..+ +....+++|||.|++++++|..|.
T Consensus 136 Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 136 SAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred ehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhh
Confidence 66554433 223589999999999999998875
No 96
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.50 E-value=8.6e-12 Score=126.35 Aligned_cols=331 Identities=20% Similarity=0.233 Sum_probs=180.7
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHh-hh-h----hhhhhc--
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK---GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMREL-QS-E----HHMKAL-- 169 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~-~~-~----~~~~~~-- 169 (556)
++|+|||||++|+..|.+|.+. ...+.|||+ ..+|.-..+..-.|.+.+.-.+..+... .+ . +++...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 6899999999999999999986 223999999 7887666655544433332222111111 00 0 111111
Q ss_pred --C----ccccccccC-HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe------cCCEEEEccceEEEeCeEE
Q 008714 170 --G----LQVHAAGYD-RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL------GPQKVKFGTDNIVTAKDII 236 (556)
Q Consensus 170 --g----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~------~~~~v~~~~~~~~~~d~lV 236 (556)
. +......|. +..+-.|+.+....+.. ......|.++...+... ..+.+...+|....+|.+|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~----~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~V 157 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLA----RGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIV 157 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHH----hcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEE
Confidence 0 111122222 22233333333222211 11111366666655422 2345666778889999999
Q ss_pred EeCCCCCCCCCC--CCCCCCe-Ee-cccccccCCC--CCCeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCCCCC
Q 008714 237 IATGSVPFVPKG--IEVDGKT-VI-TSDHALKLEF--VPDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLMPGF 308 (556)
Q Consensus 237 iAtG~~p~~p~~--~~~~~~~-v~-t~~~~~~~~~--~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll~~~ 308 (556)
+|||..+..++. ..+.+.. ++ +......++. ...+|+|+|+|.+-++....|.+.| .+||.+.|.. ++|..
T Consensus 158 latgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~~ 236 (474)
T COG4529 158 LATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPRP 236 (474)
T ss_pred EeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccCC
Confidence 999987544332 2222221 11 2222222222 2356999999999999999999988 5799998876 43321
Q ss_pred ------CH-----------------HHHHHHHHH----------------------------------------------
Q 008714 309 ------DP-----------------EIGKLAQRV---------------------------------------------- 319 (556)
Q Consensus 309 ------d~-----------------~~~~~~~~~---------------------------------------------- 319 (556)
.+ .+...+.+.
T Consensus 237 h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~ 316 (474)
T COG4529 237 HIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRF 316 (474)
T ss_pred CCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHh
Confidence 00 010111110
Q ss_pred ------------HhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCC-----C-C
Q 008714 320 ------------LINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG-----L-G 381 (556)
Q Consensus 320 ------------l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~-----l-~ 381 (556)
+..+.-++++.+ ++..|.....+..+.+.... ...++++++|.||-|+|..+.... | .
T Consensus 317 R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg---~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~s 392 (474)
T COG4529 317 RLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERG---KQHEEELDVDAVINTTGPAHDNSLSSDPFLRS 392 (474)
T ss_pred hhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccc---cCccceeeeeEEEEcCCcCcCCCccchHHHHH
Confidence 111122344433 45556555445333333221 122367899999999998775431 1 1
Q ss_pred Ccccccc--c-CCCceeeCCCCccccCCCCcCCCEEEecccCCCC----CcHHHHHHHHHHHHHHHh
Q 008714 382 LENINVV--T-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM----MLAHAASAQGISVVEQVT 441 (556)
Q Consensus 382 l~~~~~~--~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~----~~~~~A~~qg~~aa~~i~ 441 (556)
+.+.|+. + ....|.|+++.++....++..+++||+|-.+.+. +....-..|+..+|..++
T Consensus 393 l~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 393 LGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred HHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchhhhccChHHHHHHHHHHHHHh
Confidence 1122222 1 3345899999988776678899999999987542 223334455555555555
No 97
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.47 E-value=6.3e-13 Score=104.93 Aligned_cols=80 Identities=38% Similarity=0.731 Sum_probs=74.4
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEE
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIEL 350 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~ 350 (556)
+++|||+|++|+|+|..|++.|.+||++++++.+++.+++++.+.+++.+++ .||++++++.+.+++.++++ ++|++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~-~gV~v~~~~~v~~i~~~~~~--~~V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRK-RGVEVHTNTKVKEIEKDGDG--VEVTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHH-TTEEEEESEEEEEEEEETTS--EEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHH-CCCEEEeCCEEEEEEEeCCE--EEEEE
Confidence 6899999999999999999999999999999999999999999999999988 89999999999999987666 45888
Q ss_pred ecC
Q 008714 351 IDA 353 (556)
Q Consensus 351 ~~g 353 (556)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 875
No 98
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.32 E-value=2.4e-11 Score=131.66 Aligned_cols=244 Identities=16% Similarity=0.236 Sum_probs=136.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccC---CCCchhhHhhhHHHHHhhhhh-hhhhcCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSKALLAVSGRMRELQSEH-HMKALGLQVH 174 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g---~ips~~l~~~~~~~~~~~~~~-~~~~~g~~~~ 174 (556)
.++||||||+|++|++||+.+++.|++|+|||| ..+||.+...+ ++|.+.+....+..+...... .+... .
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~ 81 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSI----V 81 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHH----h
Confidence 358999999999999999999999999999999 77888877554 566665544433322221110 00000 0
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCc--EEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC----CCCCCC
Q 008714 175 AAGYDRQGVADHANNLATKIRNNLTNSMKALGV--DILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV----PFVPKG 248 (556)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~----p~~p~~ 248 (556)
....+...+..+.+... +..+++.+ ..++ ++..+.... ++. ..|.. ...|.
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~l~~---~~~~~~~~~~~~~~~---------------~~~---~~~~~~~g~~~~~~- 138 (557)
T PRK07843 82 GDVVPPERIDAYLDRGP-EMLSFVLA---HSPLKLCWVPGYSDY---------------YPE---APGGRPGGRSIEPK- 138 (557)
T ss_pred hhhcCHHhhhhHHhcCh-HHHHHHHh---cCCceEEecCCCCCc---------------CCC---CCCCCCCCceecCC-
Confidence 01122222222221111 11122211 1122 222111000 000 01110 00000
Q ss_pred CCCCCCeEe-ccc-ccccCCCCCCeEEEEcCchhHHHHHHH-------HHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHH
Q 008714 249 IEVDGKTVI-TSD-HALKLEFVPDWIAIVGSGYIGLEFSDV-------YTALGSEVTFIEALDQLMPGFDPEIGKLAQRV 319 (556)
Q Consensus 249 ~~~~~~~v~-t~~-~~~~~~~~~~~v~VvG~G~~g~e~A~~-------l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~ 319 (556)
.+++..+= ..+ ....+...|+.++++|++.+++|++.. +.+++.+|++....+..+..+...+...+.+.
T Consensus 139 -~~~~~~~g~~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~ 217 (557)
T PRK07843 139 -PFDARKLGADLAGLEPPYGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIG 217 (557)
T ss_pred -CCChhhhhhHHHHhccccccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHH
Confidence 00000000 000 011245668889999999999998865 67778888877665555555677788888888
Q ss_pred HhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC-EEEEeeC-CCCC
Q 008714 320 LINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD-AALIATG-RAPF 376 (556)
Q Consensus 320 l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D-~vi~a~G-~~p~ 376 (556)
+++ .||++++++.++++..+ +++++.+..... ++...+.++ .||+|+| +.+|
T Consensus 218 ~~~-~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~---g~~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 218 LQR-AGVPVLLNTPLTDLYVE-DGRVTGVHAAES---GEPQLIRARRGVILASGGFEHN 271 (557)
T ss_pred HHc-CCCEEEeCCEEEEEEEe-CCEEEEEEEEeC---CcEEEEEeceeEEEccCCcCcC
Confidence 877 89999999999999865 455555655421 223567885 5888766 4443
No 99
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.31 E-value=1.7e-11 Score=133.44 Aligned_cols=245 Identities=19% Similarity=0.261 Sum_probs=136.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCC---CCchhhHhhhHHHHHhhhhhhhhhcCcccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGC---VPSKALLAVSGRMRELQSEHHMKALGLQVH 174 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~---ips~~l~~~~~~~~~~~~~~~~~~~g~~~~ 174 (556)
+.++||||||+|++|++||+.+++.|.+|+|||| ...||.....+. +|...+.......+.... +..+-....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~---~~~~~~~~~ 83 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREA---ARTYLKHET 83 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHH---HHHHHHHhc
Confidence 3468999999999999999999999999999999 677876553332 222111111110000000 000000000
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCC--CC-CCCCCC
Q 008714 175 AAGYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSV--PF-VPKGIE 250 (556)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~--p~-~p~~~~ 250 (556)
....+...+..+.+...+.+ + +++. .++.+... ...++---..|.. .+ .++ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~i-~----wl~~~~g~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~-~~ 140 (574)
T PRK12842 84 GAFFDAAAVEAFLDNGPEMV-E----FFERETEVKFVPT-----------------LYPDYHPDAPGGVDIGRSILA-AP 140 (574)
T ss_pred CCCCCHHHHHHHHhccHHHH-H----HHHhCCCCceeeC-----------------CCCCCCCCCCCccCCCccccC-CC
Confidence 01122222222222222211 2 2222 34443211 0000000000100 00 000 00
Q ss_pred CCCCeEecccccccCCCCCCeEEEEcCch--hHHHHHHHHHhCCCeEEEEEeCCCCCCCCC--------------HHHHH
Q 008714 251 VDGKTVITSDHALKLEFVPDWIAIVGSGY--IGLEFSDVYTALGSEVTFIEALDQLMPGFD--------------PEIGK 314 (556)
Q Consensus 251 ~~~~~v~t~~~~~~~~~~~~~v~VvG~G~--~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d--------------~~~~~ 314 (556)
.+.. .+ .++..++...++++.|+|+++ ++.|++..+...+.+++++.+.+.+++.++ ..+.+
T Consensus 141 ~~~~-~l-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~ 218 (574)
T PRK12842 141 YDIR-GL-GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAA 218 (574)
T ss_pred CChh-hh-hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHH
Confidence 1111 11 455566667789999999998 899999999999998888766665554433 34556
Q ss_pred HHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC-EEEEeeCCCCC
Q 008714 315 LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD-AALIATGRAPF 376 (556)
Q Consensus 315 ~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D-~vi~a~G~~p~ 376 (556)
.+.+.+++ .||+++.++.++++..+ +++.+.+...+.. ...++.++ .||+|+|..++
T Consensus 219 ~L~~~~~~-~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~---~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 219 RLAKSALD-LGIPILTGTPARELLTE-GGRVVGARVIDAG---GERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHh-CCCEEEeCCEEEEEEee-CCEEEEEEEEcCC---ceEEEEeCCEEEEcCCCccc
Confidence 66676766 89999999999998865 4555556655421 12357786 79999997763
No 100
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.25 E-value=5.4e-11 Score=129.53 Aligned_cols=247 Identities=16% Similarity=0.238 Sum_probs=141.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccC---CCCchhhHhhhHHHHHhhhhh-hhhhcCccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSKALLAVSGRMRELQSEH-HMKALGLQV 173 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g---~ips~~l~~~~~~~~~~~~~~-~~~~~g~~~ 173 (556)
..++||+|||+|.+|+++|..+++.|++|+|||| ..+||.+...+ |+|.+.+.......+...... .+...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---- 85 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHE---- 85 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHH----
Confidence 3468999999999999999999999999999999 67899888654 577766654443322221110 00000
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCCCCC
Q 008714 174 HAAGYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGIEVD 252 (556)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~~~~ 252 (556)
.....+...+..+.+...+.+ +| ++. .++++..... . ..+.....-.++|.++..|. .++
T Consensus 86 ~~~~~~~~l~~~~~~~s~~~~-~w----l~~~~gv~~~~~~~---------~---~d~~~~~~~~~~ggr~~~~~--~~~ 146 (581)
T PRK06134 86 LGARYDAARIDAFLEAGPHMV-AF----FERHTALRFADGNA---------I---PDYHGDTPGAATGGRSLIAA--PFD 146 (581)
T ss_pred hCcCCCHHHHHHHHhccHHHH-HH----HHhcCCceeeecCC---------C---CCCCCCCCCCCCCCCeeccC--CCC
Confidence 011233433433443333322 23 333 3565531100 0 00111122245565544331 111
Q ss_pred CCeEecccccccCCCCCCeEEEEcCchhH-HHHHHHHHhCCCeEEEEEeCCCCCCCC--------------CHHHHHHHH
Q 008714 253 GKTVITSDHALKLEFVPDWIAIVGSGYIG-LEFSDVYTALGSEVTFIEALDQLMPGF--------------DPEIGKLAQ 317 (556)
Q Consensus 253 ~~~v~t~~~~~~~~~~~~~v~VvG~G~~g-~e~A~~l~~~g~~Vtli~~~~~ll~~~--------------d~~~~~~~~ 317 (556)
+... .++...+...+.++.++|++.++ .+++..+...+..+.+.++..+++..+ ...+...+.
T Consensus 147 g~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~ 224 (581)
T PRK06134 147 GREL--GALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLL 224 (581)
T ss_pred hhhh--hHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHH
Confidence 1111 13444455566788889988776 778877776665554443322222111 234556677
Q ss_pred HHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEec-CEEEEeeCCCC
Q 008714 318 RVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEV-DAALIATGRAP 375 (556)
Q Consensus 318 ~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~-D~vi~a~G~~p 375 (556)
+.+++ .|++++.++.++++..+ +++.+.|...+. +...++.+ +.||+|+|--.
T Consensus 225 ~~a~~-~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~---~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 225 KSAED-LGVRIWESAPARELLRE-DGRVAGAVVETP---GGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHh-CCCEEEcCCEEEEEEEe-CCEEEEEEEEEC---CcEEEEEeCCEEEEcCCCcc
Confidence 77776 89999999999998765 455555555432 11236788 99999998654
No 101
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.22 E-value=9.3e-12 Score=121.90 Aligned_cols=147 Identities=22% Similarity=0.256 Sum_probs=98.4
Q ss_pred CCCCCCccEEEECCChHHHHHHHHHHHc------CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhh-------
Q 008714 96 IPKSFDYDLIIIGAGVGGHGAALHAVEK------GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQ------- 161 (556)
Q Consensus 96 ~~~~~~~dVvIIGgG~aGl~aA~~l~~~------g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~------- 161 (556)
.+....+||+|||||||||+||++|+++ .++|.|+|| .++||+.+...++...++-+....+++..
T Consensus 71 ~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~v 150 (621)
T KOG2415|consen 71 ERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPV 150 (621)
T ss_pred hhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccc
Confidence 3556679999999999999999999986 578999999 89999999988887776655433332211
Q ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHH--HHHHHHHHHHHHHcCcEEEeceEE----Eec---CCEEEEcc------
Q 008714 162 SEHHMKALGLQVHAAGYDRQGVADHANNLA--TKIRNNLTNSMKALGVDILTGVGT----ILG---PQKVKFGT------ 226 (556)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gv~~~~g~~~----~~~---~~~v~~~~------ 226 (556)
+..++..+.-....+.+.+..+.++.+.++ .++..|+.+..++.||+++++.+. +.+ ...|.++|
T Consensus 151 T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~ 230 (621)
T KOG2415|consen 151 TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKD 230 (621)
T ss_pred cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCC
Confidence 112222221111122222234444544433 567889999999999999999764 111 12233321
Q ss_pred ---------ceEEEeCeEEEeCCCC
Q 008714 227 ---------DNIVTAKDIIIATGSV 242 (556)
Q Consensus 227 ---------~~~~~~d~lViAtG~~ 242 (556)
|.++.++.-|+|.|++
T Consensus 231 G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 231 GAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CCccccccccceecceeEEEecccc
Confidence 5678899999999986
No 102
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.18 E-value=1.6e-10 Score=119.29 Aligned_cols=135 Identities=27% Similarity=0.399 Sum_probs=71.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC--------CccccccC-CCCchhhHh-----------hhHHHHHh
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV--------GGTCVNRG-CVPSKALLA-----------VSGRMREL 160 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~--------GG~~~~~g-~ips~~l~~-----------~~~~~~~~ 160 (556)
|||+|||||||||.||+.|++.|++|+|+|| +.+ +|+|+... ......+.. .-..+..-
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999 565 37887433 222222211 11111111
Q ss_pred hhhhhhhhcCcccccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE-e--c--C-CEEEEccceEE
Q 008714 161 QSEHHMKALGLQVHAA----GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI-L--G--P-QKVKFGTDNIV 230 (556)
Q Consensus 161 ~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~--~--~-~~v~~~~~~~~ 230 (556)
.....+...|++.... .|... .....+.+.+...+++.||+++.+..+. + + . +.|.+.++.++
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s-------~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~ 153 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKS-------DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEY 153 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT---------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCC-------CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccc
Confidence 1124566666653211 11110 1124556667778888999999887541 1 2 2 45666566899
Q ss_pred EeCeEEEeCCCCC
Q 008714 231 TAKDIIIATGSVP 243 (556)
Q Consensus 231 ~~d~lViAtG~~p 243 (556)
.+|+||||||+..
T Consensus 154 ~a~~vILAtGG~S 166 (409)
T PF03486_consen 154 EADAVILATGGKS 166 (409)
T ss_dssp EESEEEE----SS
T ss_pred cCCEEEEecCCCC
Confidence 9999999999764
No 103
>PRK09897 hypothetical protein; Provisional
Probab=99.18 E-value=9.4e-10 Score=117.06 Aligned_cols=182 Identities=20% Similarity=0.181 Sum_probs=97.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCCccccccCCCCchhhHhh----------hHHHHHhhh--hhhh
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCVNRGCVPSKALLAV----------SGRMRELQS--EHHM 166 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~GG~~~~~g~ips~~l~~~----------~~~~~~~~~--~~~~ 166 (556)
++|+||||||+|+++|.+|.+.+ .+|+|||+ ..+|.-+.+...-|++.++.. ....+.+.. ..++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998864 58999999 778844443333333322211 011111110 0111
Q ss_pred hhcCccc---ccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHcC--cEEEec-eEEEe----cCCEEEEcc-ceEEEeCe
Q 008714 167 KALGLQV---HAAGY-DRQGVADHANNLATKIRNNLTNSMKALG--VDILTG-VGTIL----GPQKVKFGT-DNIVTAKD 234 (556)
Q Consensus 167 ~~~g~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~g-~~~~~----~~~~v~~~~-~~~~~~d~ 234 (556)
..++... ....| .+...-.|+...... +.+.+...| +.++.. .++.+ +...|.+.+ +..+.+|+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~----l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~ 157 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLR----LVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDL 157 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHH----HHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCE
Confidence 1222221 01112 222333344333322 333455565 666655 33332 123455444 46799999
Q ss_pred EEEeCCCCCC-CCCCCCCCCCeEecccc-cccC-CCCCCeEEEEcCchhHHHHHHHHHhC
Q 008714 235 IIIATGSVPF-VPKGIEVDGKTVITSDH-ALKL-EFVPDWIAIVGSGYIGLEFSDVYTAL 291 (556)
Q Consensus 235 lViAtG~~p~-~p~~~~~~~~~v~t~~~-~~~~-~~~~~~v~VvG~G~~g~e~A~~l~~~ 291 (556)
||+|||..+. .+.. ....+...+ ...+ ...+.+|+|+|.|.++++.+..|...
T Consensus 158 VVLAtGh~~p~~~~~----~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 158 AVIATGHVWPDEEEA----TRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEECCCCCCCCCChh----hccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999997532 1111 111221111 1111 11258999999999999999888755
No 104
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.11 E-value=3.8e-09 Score=115.45 Aligned_cols=35 Identities=46% Similarity=0.668 Sum_probs=32.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDV 134 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~~ 134 (556)
.++||||||+|.||++||+.+++. |.+|+||||..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 458999999999999999999998 99999999943
No 105
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.09 E-value=8.5e-10 Score=111.78 Aligned_cols=313 Identities=19% Similarity=0.268 Sum_probs=155.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCc---cccccCC---C---CchhhHhh-----------hHHHHHh--
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGG---TCVNRGC---V---PSKALLAV-----------SGRMREL-- 160 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG---~~~~~g~---i---ps~~l~~~-----------~~~~~~~-- 160 (556)
||+|||+|.|||++|..|.+. ++|+|+.|..++. .|...|. + .|...... ....+.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 9999999966552 2222221 1 11111000 0000111
Q ss_pred ---hhhhhhhhcCccccccc---c--------CHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEE---EecCC--
Q 008714 161 ---QSEHHMKALGLQVHAAG---Y--------DRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGT---ILGPQ-- 220 (556)
Q Consensus 161 ---~~~~~~~~~g~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~---~~~~~-- 220 (556)
.-...+..+|.+.+... + ..+.+..-.......+...+...+++ .+|+++.+... ..+..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 11133455666543221 1 11111111123345666666666665 69999998533 11222
Q ss_pred --EEEEc-c---ceEEEeCeEEEeCCCCCCCCC----CCCCCCCeEe----cccccccCCC--CCCeEEEEcCchhHHHH
Q 008714 221 --KVKFG-T---DNIVTAKDIIIATGSVPFVPK----GIEVDGKTVI----TSDHALKLEF--VPDWIAIVGSGYIGLEF 284 (556)
Q Consensus 221 --~v~~~-~---~~~~~~d~lViAtG~~p~~p~----~~~~~~~~v~----t~~~~~~~~~--~~~~v~VvG~G~~g~e~ 284 (556)
.+.+. . ...+.++.+|+|||.--.+.. -....|..+- .--...++++ .-..++-.+.+.. .-+
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l~~~~~~~-~Li 246 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTALYIPQRRA-FLI 246 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeeccceecCCCCcc-cee
Confidence 23332 1 256889999999997522111 0111122110 0001111111 1122233332222 224
Q ss_pred HHHHHhCCCeEEEEEeCCCCCCCCCH-------H-HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCC
Q 008714 285 SDVYTALGSEVTFIEALDQLMPGFDP-------E-IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTK 356 (556)
Q Consensus 285 A~~l~~~g~~Vtli~~~~~ll~~~d~-------~-~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~ 356 (556)
...++..|.. .+-..+.+||+.++| + ++..+...+++ .|-.++++.+ .+.. .. +.
T Consensus 247 SEAVRGEGA~-L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~-~g~~V~LD~s--~~~~----~~--~~------- 309 (518)
T COG0029 247 SEAVRGEGAI-LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKR-GGADVFLDIS--HIPG----DF--FE------- 309 (518)
T ss_pred ehhhhcCccE-EECCCCCccccCCCCccccchHHHHHHHHHHHHHh-cCCeEEEecc--CCCc----hh--hh-------
Confidence 4555555542 234456778876543 2 33455555655 4444554421 1111 00 00
Q ss_pred CCCceEec-CEEEEeeCCCCCCCCCCCcccccccCCCceeeCCCCccccCCCCcCCCEEEecccCC-----CCCcHHHH-
Q 008714 357 EPKDTLEV-DAALIATGRAPFTNGLGLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDANG-----KMMLAHAA- 429 (556)
Q Consensus 357 ~~~~~i~~-D~vi~a~G~~p~~~~l~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~-----~~~~~~~A- 429 (556)
+.++. .......|..|.-+.+... ...-...|.|.||.+.| |++|++||+|.|+. ...++++.
T Consensus 310 ---~rFP~I~~~c~~~GiD~~r~~IPV~-PaaHY~mGGI~vD~~Gr------Tsi~gLYAiGEvA~TGlHGANRLASNSL 379 (518)
T COG0029 310 ---RRFPTIYAACLKAGIDPTREPIPVV-PAAHYTMGGIAVDANGR------TSIPGLYAIGEVACTGLHGANRLASNSL 379 (518)
T ss_pred ---hhCcHHHHHHHHcCCCcccCccCcc-chhheecccEEECCCCc------ccCcccEEeeeecccccccchhhhhhhH
Confidence 11110 1122234555544432111 01113678899999999 89999999999962 24566664
Q ss_pred ---HHHHHHHHHHHhCCC
Q 008714 430 ---SAQGISVVEQVTGRD 444 (556)
Q Consensus 430 ---~~qg~~aa~~i~g~~ 444 (556)
.--|..+|++|.+..
T Consensus 380 LE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 380 LECLVFGKRAAEDIAGRL 397 (518)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 455667777887653
No 106
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.08 E-value=1.3e-07 Score=96.99 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=88.9
Q ss_pred CCCeEEEEEeCCCCCCC-CCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEE
Q 008714 291 LGSEVTFIEALDQLMPG-FDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 291 ~g~~Vtli~~~~~ll~~-~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~ 369 (556)
.|..|.-+- .+-|. ....+.+.+.+.+++ .|++++.++.|.++..+ +++...+...++ .+..+.+|.+|+
T Consensus 246 ~g~~v~E~p---tlPPSv~G~RL~~aL~~~~~~-~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g----~~~~l~AD~vVL 316 (419)
T TIGR03378 246 TGLTLCELP---TMPPSLLGIRLEEALKHRFEQ-LGGVMLPGDRVLRAEFE-GNRVTRIHTRNH----RDIPLRADHFVL 316 (419)
T ss_pred HCCCEEeCC---CCCCCCcHHHHHHHHHHHHHH-CCCEEEECcEEEEEEee-CCeEEEEEecCC----ccceEECCEEEE
Confidence 456665542 33333 346677778888887 89999999999998865 333333443332 124799999999
Q ss_pred eeCCC-CCC-----C-------CCCCcccc-------cc------cCCCceeeCCCCccccCCCCcCCCEEEecccCCCC
Q 008714 370 ATGRA-PFT-----N-------GLGLENIN-------VV------TQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM 423 (556)
Q Consensus 370 a~G~~-p~~-----~-------~l~l~~~~-------~~------~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~ 423 (556)
|+|.- .+. + .|++.... .. ...=.|.+|++||....+ ..++|+||+|-+.+++
T Consensus 317 AaGaw~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g-~~~~Nl~a~G~vL~G~ 395 (419)
T TIGR03378 317 ASGSFFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGG-QTIENLYAIGAVLGGY 395 (419)
T ss_pred ccCCCcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCC-cccccceEechhhcCC
Confidence 99964 210 0 12111000 00 011138899999975433 3499999999998764
Q ss_pred Cc------HHHHHHHHHHHHHHHh
Q 008714 424 ML------AHAASAQGISVVEQVT 441 (556)
Q Consensus 424 ~~------~~~A~~qg~~aa~~i~ 441 (556)
.. .-+|+..|..||++|.
T Consensus 396 d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 396 DPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ChHhcCCCchhHHHHHHHHHHhhC
Confidence 32 3478888888888773
No 107
>PRK08275 putative oxidoreductase; Provisional
Probab=99.06 E-value=3.5e-09 Score=114.97 Aligned_cols=45 Identities=27% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCceeeCCCCccccCCCCcCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHh
Q 008714 391 RGFVPVDERMRVIDANGNLVPHLYCIGDANG-KMMLAHAASAQGISVVEQVT 441 (556)
Q Consensus 391 ~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~-~~~~~~~A~~qg~~aa~~i~ 441 (556)
.|.|.||.+++ |++|++||+|||+. ..+....|...|++|+.+++
T Consensus 356 ~Ggi~~d~~~~------t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 356 ASGVWVNEKAE------TTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred cCcEEECCCCc------cCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 46799999999 79999999999964 33455567888888888775
No 108
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.05 E-value=7.2e-10 Score=115.44 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=82.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHH-----HhhhhhhhhhcCccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMR-----ELQSEHHMKALGLQV 173 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~-----~~~~~~~~~~~g~~~ 173 (556)
++|||+||||||||++||+.|++.|++|+|+|| +++|...+..+.+....+........ .+... .+...+-..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~-~~~~~~~~~ 80 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGA-RIYFPGEKV 80 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeee-EEEecCCce
Confidence 469999999999999999999999999999999 88887655433333322221111110 00000 000000000
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe----c-CCEEEE-ccceEEEeCeEEEeCCCCCC
Q 008714 174 HAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL----G-PQKVKF-GTDNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~-~~~v~~-~~~~~~~~d~lViAtG~~p~ 244 (556)
.+..+. .....-....+.+|+.+..++.|++++.++.... + ...+.+ .++.+++++++|.|+|....
T Consensus 81 ---~~~~~~-~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 81 ---AIEVPV-GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred ---EEecCC-CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 000000 0000001256777888999999999999976521 2 122222 22368999999999998754
No 109
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.04 E-value=3.4e-09 Score=115.38 Aligned_cols=41 Identities=44% Similarity=0.528 Sum_probs=34.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~~~ 140 (556)
.++||||||+|.||++||+.+++. |.+|+|||| ...+|.+.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~ 46 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTV 46 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChh
Confidence 458999999999999999999987 479999999 45554443
No 110
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=6.6e-10 Score=121.01 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCC-C-C-------CcHHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANG-K-M-------MLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~-~-~-------~~~~~A~~qg~~aa~~i~g 442 (556)
..|.|.||.+.|+.+.++|++||+||+|+|++ . . +....|.-.|++|+++++.
T Consensus 350 t~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 411 (575)
T PRK05945 350 CMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAE 411 (575)
T ss_pred cCCCeeECCCceeccCCCCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 67889999999987777789999999999964 2 1 2345677889999998874
No 111
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=4.6e-09 Score=114.52 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=41.6
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCC-C----C----CcHHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANG-K----M----MLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~-~----~----~~~~~A~~qg~~aa~~i~g 442 (556)
..|.|.+|.+.|+.+.++|++||+||+|+|++ . . +....+.-.|++|+++++.
T Consensus 355 t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 355 AMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred ECCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 57889999999987777789999999999964 2 1 1344577788899988864
No 112
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.02 E-value=5e-09 Score=119.69 Aligned_cols=66 Identities=26% Similarity=0.215 Sum_probs=45.7
Q ss_pred eCCCCCCCCCCCcc--ccc--ccCCCceeeCCCCccccCCCCcCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q 008714 371 TGRAPFTNGLGLEN--INV--VTQRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-MMLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 371 ~G~~p~~~~l~l~~--~~~--~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~-~~~~~~A~~qg~~aa~~i~g 442 (556)
.|..|+.+.+.... ... ....|+|.||.+++ |++||+||+|||+.. .+....+...|++|+.++..
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~------T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHAR------TTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCc------ccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence 36777666543211 111 12457899999999 799999999999654 34555678888888888753
No 113
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.00 E-value=2.8e-08 Score=95.28 Aligned_cols=127 Identities=20% Similarity=0.173 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC-----------
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN----------- 378 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~----------- 378 (556)
-.+.+.+.+.+++ .|..++.+..|.+.+-. .+++..|...++ ....+.+|..++|+|.--...
T Consensus 258 iRl~~~L~~~f~~-~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~----~diP~~a~~~VLAsGsffskGLvae~d~I~EP 331 (421)
T COG3075 258 IRLHNQLQRQFEQ-LGGLWMPGDEVKKATCK-GGRVTEIYTRNH----ADIPLRADFYVLASGSFFSKGLVAERDKIYEP 331 (421)
T ss_pred hhHHHHHHHHHHH-cCceEecCCceeeeeee-CCeEEEEEeccc----ccCCCChhHeeeeccccccccchhhhhhhhcc
Confidence 3455677888887 88889999999888764 455556666554 224577899999999421110
Q ss_pred CCCCcccccc---------------cCCCceeeCCCCccccCCCCcCCCEEEecccCCCCCc------HHHHHHHHHHHH
Q 008714 379 GLGLENINVV---------------TQRGFVPVDERMRVIDANGNLVPHLYCIGDANGKMML------AHAASAQGISVV 437 (556)
Q Consensus 379 ~l~l~~~~~~---------------~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~~~------~~~A~~qg~~aa 437 (556)
.++++-.... ...-.|.+|+++|.++.+ ..+.|+||||.+.+++.. .-+|...|..|+
T Consensus 332 If~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g-~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa 410 (421)
T COG3075 332 IFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGG-QTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAA 410 (421)
T ss_pred hhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccc-hHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHH
Confidence 1111111100 111137889999976533 457899999999887542 345777788888
Q ss_pred HHHhCC
Q 008714 438 EQVTGR 443 (556)
Q Consensus 438 ~~i~g~ 443 (556)
+.|+.+
T Consensus 411 ~qi~~~ 416 (421)
T COG3075 411 EQIAER 416 (421)
T ss_pred HHHHHH
Confidence 887644
No 114
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=6.3e-09 Score=113.50 Aligned_cols=39 Identities=31% Similarity=0.632 Sum_probs=34.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC---CeEEEecC-CcCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG---LKTAIIEG-DVVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g---~~V~viEk-~~~GG~ 138 (556)
.++||+|||+|.||++||+.+++.| .+|+|||| ...||.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 4589999999999999999999998 89999999 444443
No 115
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.99 E-value=3.2e-08 Score=107.03 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=34.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG 137 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG 137 (556)
..++||||||+|.||+.||+.+++.|.+|+|||| ...+|
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g 53 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG 53 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence 3468999999999999999999999999999999 44444
No 116
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.98 E-value=5.5e-09 Score=111.73 Aligned_cols=38 Identities=29% Similarity=0.575 Sum_probs=33.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTC 139 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~ 139 (556)
++||||||+|.||+.||+.+++.|. |+|||| ...+|..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s 40 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS 40 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence 3799999999999999999999998 999999 4555543
No 117
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.95 E-value=1.1e-08 Score=111.59 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=39.4
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCC-C-C-------CcHHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANG-K-M-------MLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~-~-~-------~~~~~A~~qg~~aa~~i~g 442 (556)
..|.|.||.+.|+.+. |++||+||+|+|++ . . +....|...|++|+++++.
T Consensus 341 t~GGi~id~~~~v~~~--t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~ 400 (566)
T TIGR01812 341 SMGGIPTDYTGRVICE--TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAE 400 (566)
T ss_pred cCCCeEECcCcccccC--cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHH
Confidence 6788999999986554 78999999999964 2 1 2345678889999988863
No 118
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.94 E-value=4.5e-09 Score=111.99 Aligned_cols=139 Identities=23% Similarity=0.344 Sum_probs=78.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC--cCCccccccCCCCchhhHhhhHHHHHhhhh-----hhhhhcCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD--VVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALGLQ 172 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~--~~GG~~~~~g~ips~~l~~~~~~~~~~~~~-----~~~~~~g~~ 172 (556)
.+|||+|||||+||++||..+++.|++|+|||+. .+|+. +|.|+..........+.+... ......+++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m----~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM----SCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc----CCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 3599999999999999999999999999999993 66652 444543322222222211100 011111111
Q ss_pred ccccccC-HHHHHH-HHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEe--cCC---EEEEccceEEEeCeEEEeCCCC
Q 008714 173 VHAAGYD-RQGVAD-HANNLATKIRNNLTNSMKAL-GVDILTGVGTIL--GPQ---KVKFGTDNIVTAKDIIIATGSV 242 (556)
Q Consensus 173 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~--~~~---~v~~~~~~~~~~d~lViAtG~~ 242 (556)
....... .+.+.. +.+.-...+...+.+.+.+. +++++.+.+... +.. .|.+.+|..+.++.||+|||..
T Consensus 79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 1000000 000000 00111133445555556544 899988776543 222 3566778899999999999964
No 119
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=5.5e-09 Score=114.63 Aligned_cols=36 Identities=39% Similarity=0.707 Sum_probs=32.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
.++||||||+|.||++||+.+++.|.+|+||||..+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 458999999999999999999999999999999433
No 120
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.93 E-value=8.5e-09 Score=100.26 Aligned_cols=130 Identities=22% Similarity=0.295 Sum_probs=75.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCC-CCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~-ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.++||+||||||||++||+.|++.|++|+|||+ ..+||.+...+. .+...+.. . ....+..+|++.....
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~--~------~~~~l~~~gv~~~~~~ 95 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQE--E------ADEILDEFGIRYKEVE 95 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchH--H------HHHHHHHCCCCceeec
Confidence 358999999999999999999999999999999 677764322221 12111100 0 0122344554422110
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-E--e-cC-C--EEEEc-----------cceEEEeCeEEEeC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-I--L-GP-Q--KVKFG-----------TDNIVTAKDIIIAT 239 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~--~-~~-~--~v~~~-----------~~~~~~~d~lViAt 239 (556)
... +. .....+...+.+.+.+.|++++.+... . . +. . .+.+. +...+.++.||+||
T Consensus 96 ~g~-----~~-vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~AT 169 (257)
T PRK04176 96 DGL-----YV-ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDAT 169 (257)
T ss_pred Ccc-----ee-ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEe
Confidence 000 00 012345556667777789999888543 1 1 11 1 11111 12468899999999
Q ss_pred CCCC
Q 008714 240 GSVP 243 (556)
Q Consensus 240 G~~p 243 (556)
|...
T Consensus 170 G~~a 173 (257)
T PRK04176 170 GHDA 173 (257)
T ss_pred CCCc
Confidence 9753
No 121
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.93 E-value=2.5e-08 Score=108.35 Aligned_cols=38 Identities=34% Similarity=0.431 Sum_probs=32.9
Q ss_pred CccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCcc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGGT 138 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG~ 138 (556)
++||+|||+|.||+.||..+++. |.+|+|||| ...||.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~ 43 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH 43 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 58999999999999999999987 589999999 444443
No 122
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.93 E-value=3.2e-09 Score=110.57 Aligned_cols=142 Identities=18% Similarity=0.278 Sum_probs=81.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCc-cccccccC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGL-QVHAAGYD 179 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 179 (556)
+||+||||||||++||+.|++.|++|+|||| ...+..| .+++|.+.+... +....+.. .......+ ......++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c--g~~i~~~~l~~~-g~~~~~~~-~~i~~~~~~~p~~~~~~ 76 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC--GGAIPLCMVDEF-ALPRDIID-RRVTKMKMISPSNIAVD 76 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc--cccccHhhHhhc-cCchhHHH-hhhceeEEecCCceEEE
Confidence 5899999999999999999999999999999 5556556 356665444221 11111110 00000000 00000000
Q ss_pred HHHH---HHHH-HHHHHHHHHHHHHHHHHcCcEEEeceEEEe-------cCCEEEE---------ccceEEEeCeEEEeC
Q 008714 180 RQGV---ADHA-NNLATKIRNNLTNSMKALGVDILTGVGTIL-------GPQKVKF---------GTDNIVTAKDIIIAT 239 (556)
Q Consensus 180 ~~~~---~~~~-~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-------~~~~v~~---------~~~~~~~~d~lViAt 239 (556)
.... ..+. .-....+..++.+.+.+.|++++.+..... +...|.+ +...++++|.||.|+
T Consensus 77 ~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgAD 156 (398)
T TIGR02028 77 IGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGAD 156 (398)
T ss_pred eccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECC
Confidence 0000 0010 011255667778888889999998875432 1223442 122479999999999
Q ss_pred CCCCCCCC
Q 008714 240 GSVPFVPK 247 (556)
Q Consensus 240 G~~p~~p~ 247 (556)
|..+.+..
T Consensus 157 G~~S~v~~ 164 (398)
T TIGR02028 157 GANSRVAK 164 (398)
T ss_pred CcchHHHH
Confidence 98865543
No 123
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.93 E-value=3.1e-08 Score=107.60 Aligned_cols=33 Identities=52% Similarity=0.917 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHH----HcCCeEEEecCCcC
Q 008714 103 DLIIIGAGVGGHGAALHAV----EKGLKTAIIEGDVV 135 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~----~~g~~V~viEk~~~ 135 (556)
||||||+|.|||.||+.++ +.|.+|+||||..+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999443
No 124
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.93 E-value=1.4e-08 Score=98.31 Aligned_cols=39 Identities=38% Similarity=0.586 Sum_probs=35.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
.++||+||||||+|++||+.|++.|++|+|||| ..+||.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg 59 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG 59 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 358999999999999999999999999999999 667644
No 125
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.93 E-value=7.5e-08 Score=104.25 Aligned_cols=58 Identities=36% Similarity=0.633 Sum_probs=50.7
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccC---CCCchhhHhhhHH
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSKALLAVSGR 156 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g---~ips~~l~~~~~~ 156 (556)
...++||||||+| +|++||+.+++.|.+|+|||| +.+||+|.+.+ |+|.+.+....+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~ 74 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGA 74 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCc
Confidence 3457999999999 899999999999999999999 78999999888 8898877665443
No 126
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=1.1e-08 Score=110.77 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=31.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV 134 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~ 134 (556)
.++||||||+|.||++||+.+ +.|.+|+||||..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 458999999999999999999 8999999999943
No 127
>PLN02815 L-aspartate oxidase
Probab=98.91 E-value=2.8e-08 Score=107.91 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=35.0
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
....++||||||+|.|||+||+.+++.| +|+|||| ...||.
T Consensus 25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 25 ESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred CcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 3445689999999999999999999999 9999999 555553
No 128
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=1e-08 Score=111.30 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=33.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGG 137 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG 137 (556)
.++||||||+|.||++||+.+++.|.+|+|||| ...+|
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 458999999999999999999999999999999 44444
No 129
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.91 E-value=1.1e-08 Score=110.63 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=33.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
.++||||||+|.||++||+.+++. .+|+|||| ...||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 458999999999999999999986 89999999 445654
No 130
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.88 E-value=3.6e-09 Score=114.26 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTC 139 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~ 139 (556)
+.++||||||+|.||++||+.+++ |.+|+|||| ...||.+
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCch
Confidence 345899999999999999999974 999999999 5555544
No 131
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.87 E-value=2e-08 Score=105.57 Aligned_cols=144 Identities=24% Similarity=0.341 Sum_probs=77.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHH-HHhhhhhhh--hhcCccc--c
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRM-RELQSEHHM--KALGLQV--H 174 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~-~~~~~~~~~--~~~g~~~--~ 174 (556)
+|||+||||||||++||+.|++.|++|+|||| ..+|......+.+....+......+ ....-.... ..+.+.. .
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKS 84 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCC
Confidence 59999999999999999999999999999999 5555432222223222221110000 000000000 0000000 0
Q ss_pred ccccCHHH---HH---HHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEE--EEccceEEEeCeEEEeCCCCC
Q 008714 175 AAGYDRQG---VA---DHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKV--KFGTDNIVTAKDIIIATGSVP 243 (556)
Q Consensus 175 ~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v--~~~~~~~~~~d~lViAtG~~p 243 (556)
...+++.. .. ....-...++..++.+.+++.|++++.+..+ .. +...+ ...++.++.+|.||+|+|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 85 AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 00000000 00 0000123567778888888899999988543 21 22222 223456899999999999865
Q ss_pred C
Q 008714 244 F 244 (556)
Q Consensus 244 ~ 244 (556)
.
T Consensus 165 ~ 165 (428)
T PRK10157 165 I 165 (428)
T ss_pred H
Confidence 4
No 132
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.82 E-value=3.6e-08 Score=99.87 Aligned_cols=124 Identities=29% Similarity=0.449 Sum_probs=71.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEe-cC-CcCCccccccCCCCchhhHhhhHHHHHhhhh-----hhhhhcCc----
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAII-EG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALGL---- 171 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~vi-Ek-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~-----~~~~~~g~---- 171 (556)
||+|||||+||++||..+++.|++|+|+ ++ +.+|.. .|.|+..-.......+++... ......++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~----~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM----SCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc----cchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence 7999999999999999999999999999 44 555543 344432211111111111100 00111111
Q ss_pred -------ccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEe--cC---CEEEEccceEEEeCeEE
Q 008714 172 -------QVHAA--GYDRQGVADHANNLATKIRNNLTNSMKA-LGVDILTGVGTIL--GP---QKVKFGTDNIVTAKDII 236 (556)
Q Consensus 172 -------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~--~~---~~v~~~~~~~~~~d~lV 236 (556)
....+ .+|. ..+..++.+.++. .+++++.+.+..+ +. ..|.+.+|.++.+|.+|
T Consensus 77 lN~skGpav~a~r~qvDr-----------~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vV 145 (392)
T PF01134_consen 77 LNRSKGPAVHALRAQVDR-----------DKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVV 145 (392)
T ss_dssp ESTTS-GGCTEEEEEE-H-----------HHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEE
T ss_pred ccccCCCCccchHhhccH-----------HHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEE
Confidence 11111 2343 3455555556655 6899999887754 22 35677888999999999
Q ss_pred EeCCC
Q 008714 237 IATGS 241 (556)
Q Consensus 237 iAtG~ 241 (556)
+|||.
T Consensus 146 laTGt 150 (392)
T PF01134_consen 146 LATGT 150 (392)
T ss_dssp E-TTT
T ss_pred Eeccc
Confidence 99998
No 133
>PLN02463 lycopene beta cyclase
Probab=98.82 E-value=4.8e-08 Score=102.51 Aligned_cols=140 Identities=17% Similarity=0.112 Sum_probs=75.9
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCc--ccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGL--QVHAA 176 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~--~~~~~ 176 (556)
...+||+||||||||+++|..|++.|++|+|||+.... .|-+..++-...+ ...+..+.+... ....-+ +....
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~-~~p~~~g~w~~~l-~~lgl~~~l~~~--w~~~~v~~~~~~~ 101 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLS-IWPNNYGVWVDEF-EALGLLDCLDTT--WPGAVVYIDDGKK 101 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccc-hhccccchHHHHH-HHCCcHHHHHhh--CCCcEEEEeCCCC
Confidence 34589999999999999999999999999999983211 1111001000000 000000111000 000000 00000
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
.... ..+..-....+...+.+.+.+.|++++.+.+..+. ...|.+.++.++++|.||.|+|..+..
T Consensus 102 ~~~~---~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 102 KDLD---RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred cccc---CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 0000 00110112445566666777789999866554332 235677777789999999999987653
No 134
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.80 E-value=5.3e-08 Score=104.54 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=33.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTC 139 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~ 139 (556)
++||||||+|.||+.||+++++ |.+|+|||| ...||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 4799999999999999999987 999999999 5455554
No 135
>PRK10015 oxidoreductase; Provisional
Probab=98.80 E-value=1.4e-08 Score=106.74 Aligned_cols=144 Identities=26% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHH------HHHhhhhhhhhh----
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGR------MRELQSEHHMKA---- 168 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~------~~~~~~~~~~~~---- 168 (556)
.+|||+||||||||++||+.|++.|++|+|||| +.+|......+.+....+...... +........+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 359999999999999999999999999999999 444432111122211111110000 000000000000
Q ss_pred --cCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEE--EccceEEEeCeEEEeCCC
Q 008714 169 --LGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVK--FGTDNIVTAKDIIIATGS 241 (556)
Q Consensus 169 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~--~~~~~~~~~d~lViAtG~ 241 (556)
..++......+......+ .-....+..++.+.+++.|++++.+..+ .. +...+. ..++.++.+|.||+|+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASY-TVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred CceEeecccCCCCCCCcCce-EeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCc
Confidence 000000000000000000 0113567777888888899999988543 21 222222 223457999999999998
Q ss_pred CCC
Q 008714 242 VPF 244 (556)
Q Consensus 242 ~p~ 244 (556)
...
T Consensus 163 ~s~ 165 (429)
T PRK10015 163 NSM 165 (429)
T ss_pred chh
Confidence 644
No 136
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.79 E-value=1.2e-07 Score=99.85 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=76.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhh-----hhhhhhcCcc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQS-----EHHMKALGLQ 172 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~-----~~~~~~~g~~ 172 (556)
..++||+||||||||++||+.|++.|++|+|+||. ...-.| .+.+|...+.. .+..+.+.. ......-+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~c--gg~i~~~~l~~-lgl~~~~~~~~i~~~~~~~p~~~~ 113 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPC--GGAIPLCMVGE-FDLPLDIIDRKVTKMKMISPSNVA 113 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCc--cccccHhHHhh-hcCcHHHHHHHhhhheEecCCceE
Confidence 44699999999999999999999999999999983 221112 12244322211 111111100 0000000110
Q ss_pred ccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHcCcEEEeceEEEec-------CCEEEEc---------cceEEEeCeE
Q 008714 173 VHAAGYDRQGVADHA-NNLATKIRNNLTNSMKALGVDILTGVGTILG-------PQKVKFG---------TDNIVTAKDI 235 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~-------~~~v~~~---------~~~~~~~d~l 235 (556)
...... ... ..+. .-....+..++.+.+.+.|++++.+.....+ ...|.+. +..++++|.|
T Consensus 114 v~~~~~-~~~-~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~V 191 (450)
T PLN00093 114 VDIGKT-LKP-HEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAV 191 (450)
T ss_pred EEeccc-CCC-CCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEE
Confidence 000000 000 0000 0012556777788888889999887644221 1234432 2357999999
Q ss_pred EEeCCCCCC
Q 008714 236 IIATGSVPF 244 (556)
Q Consensus 236 ViAtG~~p~ 244 (556)
|-|+|....
T Consensus 192 IgADG~~S~ 200 (450)
T PLN00093 192 IGADGANSR 200 (450)
T ss_pred EEcCCcchH
Confidence 999997654
No 137
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.78 E-value=1.3e-08 Score=101.58 Aligned_cols=138 Identities=20% Similarity=0.279 Sum_probs=72.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHH-Hhhh---hhhhhhcCcccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMR-ELQS---EHHMKALGLQVHAA 176 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~-~~~~---~~~~~~~g~~~~~~ 176 (556)
|||+|||||++|+++|+.|++.|.+|+|||| ...+..+. ...+....+........ .... ...+...+-.....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPC-GGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIP 79 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccc-cCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEec
Confidence 6999999999999999999999999999999 44443221 12222221111000000 0000 00000000000000
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ecCC--EEEEc-cceEEEeCeEEEeCCCCCC
Q 008714 177 GYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LGPQ--KVKFG-TDNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~~--~v~~~-~~~~~~~d~lViAtG~~p~ 244 (556)
.... ....-....+...+.+.+.+.|++++.+.... .+.. .+.+. ++.++++|+||+|+|....
T Consensus 80 -~~~~---~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 80 -IETE---LAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred -cCCC---cEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 0000 00000124455666777777899998875432 2222 23333 3457999999999998643
No 138
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.77 E-value=5.4e-08 Score=101.32 Aligned_cols=131 Identities=20% Similarity=0.184 Sum_probs=75.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc---cCCCCchhhHhhhHHHHHhhhhhhhhh-cCccccccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN---RGCVPSKALLAVSGRMRELQSEHHMKA-LGLQVHAAG 177 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~---~g~ips~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 177 (556)
||+|||||+||+++|..|++.|++|+|||+ +.+|+.+.+ ..+++...+ ...... .+.. +.+. .+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~--~~~ 70 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGL-------ADCVEH-VWPDVYEYR--FPK 70 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhch-------hhHHhh-cCCCceEEe--cCC
Confidence 799999999999999999999999999999 567764321 111111110 000000 0000 0000 000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec-----CCEEEEccceEEEeCeEEEeCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG-----PQKVKFGTDNIVTAKDIIIATGSVP 243 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~-----~~~v~~~~~~~~~~d~lViAtG~~p 243 (556)
.....-..+..-....+.+.+.+.+.+.|++++.+.+.... ...|.+.++.++++|.||.|+|..+
T Consensus 71 ~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 71 QPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00000000000112445566666777779999877665432 2345666677899999999999876
No 139
>PRK06834 hypothetical protein; Provisional
Probab=98.74 E-value=4.5e-08 Score=104.51 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=78.1
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC--CccccccCCCCchhh--HhhhHHHHHhhhh-hhh--hhcCcc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV--GGTCVNRGCVPSKAL--LAVSGRMRELQSE-HHM--KALGLQ 172 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~--GG~~~~~g~ips~~l--~~~~~~~~~~~~~-~~~--~~~g~~ 172 (556)
++||+||||||+|+++|+.|++.|++|+|||| ... .+. ...++....+ +...+..+.+... ... ..++..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~--Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGS--RAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAAT 80 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCc--ceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeE
Confidence 48999999999999999999999999999999 332 111 1112333222 2222222222110 000 011100
Q ss_pred -ccccccCHH-HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE---EecC--CEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 173 -VHAAGYDRQ-GVADHANNLATKIRNNLTNSMKALGVDILTGVGT---ILGP--QKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 173 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~---~~~~--~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
.....+... ... ..-....+...+.+.+++.|++++.+... ..+. ..+.+.++.++++|+||.|.|.++.+
T Consensus 81 ~~~~~~~~~~~~~~--~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 81 RLDISDFPTRHNYG--LALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred ecccccCCCCCCcc--ccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000000000 000 00011334555666777789999988654 1222 24455566789999999999998765
Q ss_pred C
Q 008714 246 P 246 (556)
Q Consensus 246 p 246 (556)
.
T Consensus 159 R 159 (488)
T PRK06834 159 R 159 (488)
T ss_pred H
Confidence 4
No 140
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.73 E-value=1.3e-07 Score=86.49 Aligned_cols=125 Identities=26% Similarity=0.342 Sum_probs=66.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhH-hhhHHHHHhhhhhhhhhcCccccc--
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALL-AVSGRMRELQSEHHMKALGLQVHA-- 175 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~-~~~~~~~~~~~~~~~~~~g~~~~~-- 175 (556)
.++||+||||||+||+||+.|++.|+||+|||+ ..+||.....|.+-++... ..+. ..+..+|++...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~--------~iL~elgi~y~~~~ 87 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEAD--------EILDELGIPYEEYG 87 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTH--------HHHHHHT---EE-S
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHH--------HHHHhCCceeEEeC
Confidence 358999999999999999999999999999999 6677654333332222211 1111 123344444221
Q ss_pred c-c--cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ecC-CEEE---Ec-----------cceEEEeCe
Q 008714 176 A-G--YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LGP-QKVK---FG-----------TDNIVTAKD 234 (556)
Q Consensus 176 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~-~~v~---~~-----------~~~~~~~d~ 234 (556)
. . .|. .++...+....-+.|++++...... ... .+|. ++ |--.++++.
T Consensus 88 ~g~~v~d~-----------~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ 156 (230)
T PF01946_consen 88 DGYYVADS-----------VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKV 156 (230)
T ss_dssp SEEEES-H-----------HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESE
T ss_pred CeEEEEcH-----------HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeE
Confidence 0 1 122 2233344444555899999987652 122 3332 21 234799999
Q ss_pred EEEeCCCCC
Q 008714 235 IIIATGSVP 243 (556)
Q Consensus 235 lViAtG~~p 243 (556)
+|=|||...
T Consensus 157 ViDaTGHda 165 (230)
T PF01946_consen 157 VIDATGHDA 165 (230)
T ss_dssp EEE---SSS
T ss_pred EEeCCCCch
Confidence 999999763
No 141
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.71 E-value=1.8e-07 Score=85.08 Aligned_cols=123 Identities=26% Similarity=0.357 Sum_probs=71.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCC-CCchhhHhhhHHHHHhhhhhhhhhcCccccc--c
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGC-VPSKALLAVSGRMRELQSEHHMKALGLQVHA--A 176 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~-ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~--~ 176 (556)
+.||+||||||+||+||+.|++.|+||+|||+ -.+||-..-.|. .|.-.+...+. ..+..+|++... .
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~--------~iL~e~gI~ye~~e~ 101 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEAD--------EILDEFGIRYEEEED 101 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHH--------HHHHHhCCcceecCC
Confidence 36999999999999999999999999999999 556543333333 33333222222 234455655321 1
Q ss_pred c---cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE----ecCCEE---EEc-----------cceEEEeCeE
Q 008714 177 G---YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI----LGPQKV---KFG-----------TDNIVTAKDI 235 (556)
Q Consensus 177 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~----~~~~~v---~~~-----------~~~~~~~d~l 235 (556)
. .|. .++...+....-..|++++.+.... .+..+| .++ |--.++++++
T Consensus 102 g~~v~ds-----------~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~V 170 (262)
T COG1635 102 GYYVADS-----------AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAV 170 (262)
T ss_pred ceEEecH-----------HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEE
Confidence 1 122 1222333344445688888876541 122122 111 2246788888
Q ss_pred EEeCCCC
Q 008714 236 IIATGSV 242 (556)
Q Consensus 236 ViAtG~~ 242 (556)
|=|||..
T Consensus 171 vDaTGHd 177 (262)
T COG1635 171 VDATGHD 177 (262)
T ss_pred EeCCCCc
Confidence 8888864
No 142
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.70 E-value=6.1e-08 Score=100.84 Aligned_cols=140 Identities=19% Similarity=0.224 Sum_probs=74.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccc-cc--cc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQV-HA--AG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~-~~--~~ 177 (556)
|||+||||||||+++|+.|++.|++|+|+|+. ..-..| .+.++...+- ..+..+.+... ......+.. .. ..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~c--g~~i~~~~l~-~l~i~~~~~~~-~~~~~~~~~~~~~~~~ 76 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPC--GGAIPPCLIE-EFDIPDSLIDR-RVTQMRMISPSRVPIK 76 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcC--cCCcCHhhhh-hcCCchHHHhh-hcceeEEEcCCCceee
Confidence 69999999999999999999999999999984 111122 1223322211 11111111000 000000000 00 00
Q ss_pred cCHHHHHHHH-HHHHHHHHHHHHHHHHHcCcEEEeceEEEe----cCCEEEEcc--------ceEEEeCeEEEeCCCCCC
Q 008714 178 YDRQGVADHA-NNLATKIRNNLTNSMKALGVDILTGVGTIL----GPQKVKFGT--------DNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~----~~~~v~~~~--------~~~~~~d~lViAtG~~p~ 244 (556)
.+.+.-..+. .-....+..++.+.+.+.|++++.+.++.. +...+.+.+ ..++++|.||.|+|.+..
T Consensus 77 ~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 77 VTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred eccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 0000000010 011255667777777888999987764432 122344332 247999999999998754
Q ss_pred C
Q 008714 245 V 245 (556)
Q Consensus 245 ~ 245 (556)
+
T Consensus 157 v 157 (388)
T TIGR02023 157 V 157 (388)
T ss_pred H
Confidence 3
No 143
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.70 E-value=8.8e-08 Score=85.94 Aligned_cols=131 Identities=17% Similarity=0.259 Sum_probs=69.9
Q ss_pred EEECCChHHHHHHHHHHHc-----CCeEEEecCCcCC-c-cccccCCCCchhhHhhhHHHHHhhh-h-hhh----hhcC-
Q 008714 105 IIIGAGVGGHGAALHAVEK-----GLKTAIIEGDVVG-G-TCVNRGCVPSKALLAVSGRMRELQS-E-HHM----KALG- 170 (556)
Q Consensus 105 vIIGgG~aGl~aA~~l~~~-----g~~V~viEk~~~G-G-~~~~~g~ips~~l~~~~~~~~~~~~-~-~~~----~~~g- 170 (556)
+|||+|++|++++.+|.+. ..+|+|||+...| | .|.. .-.++..+...+..+..... . ..| ..-+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~-~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRP-DQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCC-CCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999988 5689999996666 3 3322 11222222222222211110 0 011 1111
Q ss_pred ---cccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHcC--cEEEeceEEEe----cCCEEEEccceEEEeCeEEEeCC
Q 008714 171 ---LQVHAAGY-DRQGVADHANNLATKIRNNLTNSMKALG--VDILTGVGTIL----GPQKVKFGTDNIVTAKDIIIATG 240 (556)
Q Consensus 171 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~g~~~~~----~~~~v~~~~~~~~~~d~lViAtG 240 (556)
.......| .+..+-.|+....+.+. ..+ ..+ |..+...++.+ +.+.|.+.+|..+.+|+||+|||
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~----~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLL----ARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHH----Hhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 01111122 23333344443333322 222 334 44555555433 34567788889999999999999
Q ss_pred C
Q 008714 241 S 241 (556)
Q Consensus 241 ~ 241 (556)
.
T Consensus 155 h 155 (156)
T PF13454_consen 155 H 155 (156)
T ss_pred C
Confidence 5
No 144
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.70 E-value=2e-08 Score=105.53 Aligned_cols=134 Identities=25% Similarity=0.373 Sum_probs=38.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhH----hhhHHHHHhhhhhhhhhcCccccccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALL----AVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~----~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
||||||||+||++||+.+++.|++|+|||| +.+||.....+..+..... ...+....+... +...+.......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~--~~~~~~~~~~~~ 78 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR--LRARGGYPQEDR 78 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS--T-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH--Hhhhcccccccc
Confidence 899999999999999999999999999999 8899987765543322211 112222222111 111100000000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ecC---CEEEEcc---ceEEEeCeEEEeCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LGP---QKVKFGT---DNIVTAKDIIIATGS 241 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~---~~v~~~~---~~~~~~d~lViAtG~ 241 (556)
..+. .........+...+.+.+.+.|++++.++... .+. ..|.+.+ ..++.++.+|-|||-
T Consensus 79 ~~~~---~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 79 YGWV---SNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 00001112333445566677899999887541 122 2344432 467999999999993
No 145
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.69 E-value=1.1e-07 Score=101.05 Aligned_cols=142 Identities=21% Similarity=0.294 Sum_probs=79.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCC-------chh--hHh---h------hHHHHH---
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVP-------SKA--LLA---V------SGRMRE--- 159 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ip-------s~~--l~~---~------~~~~~~--- 159 (556)
+||||||+|.||++||+.|++.|.+|+||||. ..+.++...+.++ +.. +.+ . ...++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 79999999999999999999999999999994 3333333333331 100 000 0 000110
Q ss_pred --hhhhhhhhhcCccccccc----cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe--cCCE---EEEccce
Q 008714 160 --LQSEHHMKALGLQVHAAG----YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL--GPQK---VKFGTDN 228 (556)
Q Consensus 160 --~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~---v~~~~~~ 228 (556)
.....++..+|++..... ..++.+..........+...+.+.+++.|++++.+.+... +... +.+ ++.
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~ 160 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGE 160 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCE
Confidence 011134455665542110 0111110001112244556666777778999987755432 2222 333 346
Q ss_pred EEEeCeEEEeCCCCCC
Q 008714 229 IVTAKDIIIATGSVPF 244 (556)
Q Consensus 229 ~~~~d~lViAtG~~p~ 244 (556)
.+.++.||+|||+...
T Consensus 161 ~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 161 LLKFDATVIATGGFSG 176 (466)
T ss_pred EEEeCeEEECCCcCcC
Confidence 7999999999998754
No 146
>PRK06847 hypothetical protein; Provisional
Probab=98.69 E-value=3.1e-08 Score=102.58 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC--ccccccCCCCchh--hHhhhHHHHHhhhh-hhhhhcCccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG--GTCVNRGCVPSKA--LLAVSGRMRELQSE-HHMKALGLQV 173 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G--G~~~~~g~ips~~--l~~~~~~~~~~~~~-~~~~~~g~~~ 173 (556)
...||+|||||++|+++|..|++.|++|+|+|+ ..+. |... ++.... .+...+..+.+... .....+.+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~---~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGI---TLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCcee---eecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 357999999999999999999999999999998 4321 1110 011111 11111111111100 0000000000
Q ss_pred --cc--cccCHHHH-----HHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEEEeC
Q 008714 174 --HA--AGYDRQGV-----ADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDIIIAT 239 (556)
Q Consensus 174 --~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lViAt 239 (556)
.. ..++.... .....-....+...+.+.+.+.|++++.+... .. +. ..+.+.++.++.+|.||.|+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 00 00000000 00000112445566666777779999888543 21 22 34556677889999999999
Q ss_pred CCCCCC
Q 008714 240 GSVPFV 245 (556)
Q Consensus 240 G~~p~~ 245 (556)
|.++.+
T Consensus 160 G~~s~~ 165 (375)
T PRK06847 160 GLYSKV 165 (375)
T ss_pred CCCcch
Confidence 987654
No 147
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.67 E-value=2.1e-07 Score=97.84 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
..+.+.+.+.+++ .||+++.++.++++..+ +++++.+...+.. +++..++.++.||+|+|--..
T Consensus 141 ~~~~~~l~~~~~~-~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~-~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEE-AGVDIRFNTRVTDLITE-DGRVTGVVAENPA-DGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHH-TTEEEEESEEEEEEEEE-TTEEEEEEEEETT-TCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhh-cCeeeeccceeeeEEEe-CCceeEEEEEECC-CCeEEEEeeeEEEeccCcccc
Confidence 4556667777776 88999999999999886 6677777776321 123357889999999997554
No 148
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.67 E-value=1.9e-07 Score=95.52 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.||+|||||++|+++|..|++.|++|+|||+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~ 33 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 33 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 5899999999999999999999999999997
No 149
>PLN02661 Putative thiazole synthesis
Probab=98.67 E-value=3.7e-07 Score=91.12 Aligned_cols=40 Identities=38% Similarity=0.529 Sum_probs=35.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHHc-CCeEEEecC-CcCCcc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG-DVVGGT 138 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk-~~~GG~ 138 (556)
..++||+|||||++|+.||+.|++. |++|+|||| ..+||.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 3568999999999999999999986 899999999 666653
No 150
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.66 E-value=1.4e-07 Score=100.67 Aligned_cols=139 Identities=24% Similarity=0.292 Sum_probs=76.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhh-----hhhhhcC--ccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSE-----HHMKALG--LQV 173 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~-----~~~~~~g--~~~ 173 (556)
|||+|||||+||+.+|..+++.|.+|+|||+ ...+|.| +|.|+..-.......+.+... ......+ +..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~---~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC---SCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC---CccccccccccchhhhhhhcccchHHHHHHhhceehee
Confidence 6999999999999999999999999999998 3444433 344432211111111111000 0000000 010
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHc-CcEEEeceEEEe--c-C---CEEEEccceEEEeCeEEEeCCCCC
Q 008714 174 HAAGYDRQGVADHANNLATKIRNNLTNSMKAL-GVDILTGVGTIL--G-P---QKVKFGTDNIVTAKDIIIATGSVP 243 (556)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~g~~~~~--~-~---~~v~~~~~~~~~~d~lViAtG~~p 243 (556)
......+.....+.+--...+...+.+.+++. +++++.+.++.. + . ..|.+.++..+.+|.||+|||...
T Consensus 78 ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 78 LNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred cccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 00000000000000111134455566666665 889988877643 1 1 246677777899999999999763
No 151
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.65 E-value=1.6e-06 Score=93.16 Aligned_cols=41 Identities=39% Similarity=0.718 Sum_probs=36.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
.++||||||+|.||++||+.+++.|.+|+|||| ..+||...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 468999999999999999999999999999999 66777543
No 152
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.65 E-value=3e-07 Score=91.95 Aligned_cols=99 Identities=22% Similarity=0.317 Sum_probs=77.9
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC---C--------CCCCC-----HHHHHHHHHHHhCCCceEEEcCceE
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ---L--------MPGFD-----PEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~---l--------l~~~d-----~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + +|.+. .++.+.+.+.+++ .|++++. ..+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~~~~-~~v 79 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVK-FGAEIIY-EEV 79 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHH-cCCeEEE-EEE
Confidence 589999999999999999999999999997651 1 13332 5777888888876 8999998 788
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG 379 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~ 379 (556)
.+++..+ ....+++.++ .++.+|.||+|+|..|+...
T Consensus 80 ~~v~~~~--~~~~v~~~~~------~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 80 IKVDLSD--RPFKVKTGDG------KEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEEecC--CeeEEEeCCC------CEEEeCEEEECCCCCcccCC
Confidence 8888743 3355666554 58999999999999887543
No 153
>PRK07121 hypothetical protein; Validated
Probab=98.65 E-value=1.8e-06 Score=92.75 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=37.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
.++||||||+|.||++||+++++.|.+|+|||| ...||....
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~ 61 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATAL 61 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccc
Confidence 468999999999999999999999999999999 566776543
No 154
>PRK07190 hypothetical protein; Provisional
Probab=98.62 E-value=1.3e-07 Score=100.99 Aligned_cols=142 Identities=20% Similarity=0.239 Sum_probs=75.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC--CccccccCCCC-chhhHhhhHHHHHhhhhh-hhhhc-----C
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV--GGTCVNRGCVP-SKALLAVSGRMRELQSEH-HMKAL-----G 170 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~--GG~~~~~g~ip-s~~l~~~~~~~~~~~~~~-~~~~~-----g 170 (556)
.+||+||||||+|+++|+.|++.|.+|+|||| +.+ .|.+. +..| +..++...+..+.+.... ..... +
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~--~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRAD--ALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccce--EeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 48999999999999999999999999999999 443 22221 1111 111222222222211100 00000 0
Q ss_pred --ccccccccC-HH-HHHHH-HHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ecC--CEEEEccceEEEeCeEEEeCC
Q 008714 171 --LQVHAAGYD-RQ-GVADH-ANNLATKIRNNLTNSMKALGVDILTGVGTI---LGP--QKVKFGTDNIVTAKDIIIATG 240 (556)
Q Consensus 171 --~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~--~~v~~~~~~~~~~d~lViAtG 240 (556)
+......++ .. ....+ ..--...+...+.+.+.+.|++++.+.... .+. ..+.+.+++++++++||.|+|
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCC
Confidence 000000000 00 00000 000012344455666777899999886541 222 234555667899999999999
Q ss_pred CCCC
Q 008714 241 SVPF 244 (556)
Q Consensus 241 ~~p~ 244 (556)
.+..
T Consensus 163 ~~S~ 166 (487)
T PRK07190 163 SRSF 166 (487)
T ss_pred CCHH
Confidence 8754
No 155
>PLN02697 lycopene epsilon cyclase
Probab=98.62 E-value=2.1e-07 Score=99.36 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=73.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCc--cccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGL--QVHA 175 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~--~~~~ 175 (556)
...+||+||||||||+++|..|++.|++|+|||+ ..+...| | +-...+.. .+..+.+.. .+..... +...
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~---G-vW~~~l~~-lgl~~~i~~--~w~~~~v~~~~~~ 178 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---G-VWEDEFKD-LGLEDCIEH--VWRDTIVYLDDDK 178 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc---c-cchhHHHh-cCcHHHHHh--hcCCcEEEecCCc
Confidence 3469999999999999999999999999999998 3332222 1 11111100 000000100 0000000 0000
Q ss_pred cc-cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEec----CCE-EEEccceEEEeCeEEEeCCCCC
Q 008714 176 AG-YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTILG----PQK-VKFGTDNIVTAKDIIIATGSVP 243 (556)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~----~~~-v~~~~~~~~~~d~lViAtG~~p 243 (556)
.. .+ ..|..-....+.+.+.+.+.+.|++++...+..+. ... +...++.++.++.||+|+|..+
T Consensus 179 ~~~~~----~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 179 PIMIG----RAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eeecc----CcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00 00 00100112455666666777789998766655332 222 3345667899999999999875
No 156
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.60 E-value=2.6e-07 Score=96.39 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=76.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc-cc----ccCCCC-chhhHhhhHHHHHhhhh--hhhhhcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT-CV----NRGCVP-SKALLAVSGRMRELQSE--HHMKALG 170 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~-~~----~~g~ip-s~~l~~~~~~~~~~~~~--~~~~~~g 170 (556)
..+||+|||||++|+++|+.|++.|++|+|||+ +..... +. .....| +..++..-+..+.+... ..+..+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 458999999999999999999999999999999 322100 00 000111 11122222222222110 0000000
Q ss_pred ccc-c---ccccCHHHHHHH-HH--HHHHHHHHHHHHHHHHcCcEEEeceEEE---ec--CCEEEEccceEEEeCeEEEe
Q 008714 171 LQV-H---AAGYDRQGVADH-AN--NLATKIRNNLTNSMKALGVDILTGVGTI---LG--PQKVKFGTDNIVTAKDIIIA 238 (556)
Q Consensus 171 ~~~-~---~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~--~~~v~~~~~~~~~~d~lViA 238 (556)
+.. . ...++....... .. -....+...+.+.+++.|++++.+.... .+ ...+.+.++.++.+|.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A 164 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAA 164 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEe
Confidence 000 0 001111000000 00 0013455566666777899998875431 12 23455566778999999999
Q ss_pred CCCCCCC
Q 008714 239 TGSVPFV 245 (556)
Q Consensus 239 tG~~p~~ 245 (556)
+|..+.+
T Consensus 165 dG~~S~v 171 (392)
T PRK08773 165 DGAASTL 171 (392)
T ss_pred cCCCchH
Confidence 9988653
No 157
>PRK12839 hypothetical protein; Provisional
Probab=98.59 E-value=1.8e-06 Score=93.79 Aligned_cols=57 Identities=30% Similarity=0.578 Sum_probs=47.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccC---CCCchhhHhhh
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPSKALLAVS 154 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g---~ips~~l~~~~ 154 (556)
++.++||+|||+|.+|++||+.|++.|.+|+|||| ..+||+|.+.+ |+|.+.+....
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~ 65 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARAD 65 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhc
Confidence 34568999999999999999999999999999999 67899988765 57776665433
No 158
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.58 E-value=1.7e-07 Score=97.63 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=31.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+||+|||||++|+++|+.|++.|++|+|+||
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAP 36 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 48999999999999999999999999999999
No 159
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.56 E-value=6.9e-07 Score=91.69 Aligned_cols=38 Identities=39% Similarity=0.633 Sum_probs=34.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGG 137 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~GG 137 (556)
.++||+|||||..|+++|..|++.+ ++|+|||| +.+|.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 4589999999999999999999997 99999999 66653
No 160
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.56 E-value=2.7e-07 Score=96.99 Aligned_cols=35 Identities=37% Similarity=0.664 Sum_probs=32.6
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+..+||+|||||++|+++|..|++.|++|+|||+
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence 34468999999999999999999999999999999
No 161
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.56 E-value=1.4e-06 Score=93.04 Aligned_cols=41 Identities=32% Similarity=0.419 Sum_probs=35.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCc---CCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV---VGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~---~GG~~~ 140 (556)
.++||||||+|.+|++||++|++.|.+|+||||.. .||...
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~ 46 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSR 46 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccc
Confidence 45899999999999999999999999999999942 566543
No 162
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.56 E-value=4e-07 Score=95.39 Aligned_cols=33 Identities=36% Similarity=0.642 Sum_probs=31.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGG 34 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCC
Confidence 479999999999999999999999999999994
No 163
>PRK11445 putative oxidoreductase; Provisional
Probab=98.55 E-value=3.6e-07 Score=93.69 Aligned_cols=31 Identities=35% Similarity=0.516 Sum_probs=29.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
+|||+||||||||+++|..|++. ++|+|||+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~ 31 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDK 31 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEEC
Confidence 38999999999999999999999 99999998
No 164
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.55 E-value=1.4e-06 Score=92.31 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
.++.+.+.+.+++ .|++++.++.++++..+++++.+.+.+.+. .+....+.++.||+|+|-
T Consensus 130 ~~l~~~l~~~~~~-~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~--~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 130 AEIVQKLYKKAKK-EGIDTRLNSKVEDLIQDDQGTVVGVVVKGK--GKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHH-cCCEEEeCCEeeEeEECCCCcEEEEEEEeC--CCeEEEEecceEEEecCC
Confidence 4456666666766 899999999999998765566666665432 112235789999999994
No 165
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.54 E-value=2e-06 Score=88.09 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
..+.+.+.+.+++ .|++++.+++|+++..++ +....|.+.+| ++.+|.||+|+|...
T Consensus 147 ~~l~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g-------~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 147 RRLIQALAAEAQR-AGVEIRTGTEVTSIDVDG-GRVTGVRTSDG-------EIRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHH-TT-EEEESEEEEEEEEET-TEEEEEEETTE-------EEEECEEEE--GGGH
T ss_pred cchhhhhHHHHHH-hhhhccccccccchhhcc-ccccccccccc-------ccccceeEecccccc
Confidence 5566777777776 799999999999999753 33333888776 499999999999744
No 166
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.54 E-value=4.4e-07 Score=94.49 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..+||+|||||++|+++|..|++.|++|+|||+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4589999999999999999999999999999993
No 167
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.53 E-value=2.5e-07 Score=95.64 Aligned_cols=133 Identities=22% Similarity=0.166 Sum_probs=74.0
Q ss_pred cEEEECCChHHHHHHHHH--HHcCCeEEEecC-CcC--CccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 103 DLIIIGAGVGGHGAALHA--VEKGLKTAIIEG-DVV--GGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l--~~~g~~V~viEk-~~~--GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
||+|||||+||+++|.+| ++.|.+|+|||+ ... ...+. .|.-.+.+.. ++..... .+. ++....+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~t--W~~~~~~~~~----~~~~v~~-~w~--~~~v~~~~ 71 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRT--WCFWEKDLGP----LDSLVSH-RWS--GWRVYFPD 71 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcc--cccccccccc----hHHHHhe-ecC--ceEEEeCC
Confidence 899999999999999999 777999999998 554 34331 1211111110 1111000 000 00000000
Q ss_pred cCHHHH-HHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecC----CEEEEccceEEEeCeEEEeCCCCCC
Q 008714 178 YDRQGV-ADHANNLATKIRNNLTNSMKALGVDILTGVGTILGP----QKVKFGTDNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~----~~v~~~~~~~~~~d~lViAtG~~p~ 244 (556)
...... ..|..-....+.+.+.+.+...++.++...+..+.. ..|.+.+|.+++++.||-|+|..+.
T Consensus 72 ~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 72 GSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 000000 011101124555666666666677777776654432 3456778889999999999996543
No 168
>PRK06184 hypothetical protein; Provisional
Probab=98.53 E-value=3.2e-07 Score=98.79 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=32.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~ 135 (556)
++||+||||||+|+++|..|++.|++|+|||| +.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 48999999999999999999999999999999 443
No 169
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.52 E-value=1.3e-06 Score=92.60 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhCCCeEEEEEeCCCCC---CCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEec-CC--CCeEEEEEec
Q 008714 279 YIGLEFSDVYTALGSEVTFIEALDQLM---PGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPA-KD--GKPVTIELID 352 (556)
Q Consensus 279 ~~g~e~A~~l~~~g~~Vtli~~~~~ll---~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~-~~--g~~~~v~~~~ 352 (556)
.++.|+...+.++=.++.-+.....+. ..-.+.+...+.+.+++ +||++++++.|+++..+ ++ +.+..|....
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~-~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~ 270 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLED-HGVDFQYGTKVTDIDFDITGGKKTATAIHLTR 270 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe
Confidence 589999999877632222221111111 11236677888899987 99999999999999874 22 4455666653
Q ss_pred CCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 353 AKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 353 g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.+..+.-...+.|.||+++|.--...
T Consensus 271 ~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 271 NGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred CCceeEEEecCCCEEEEeCCcCcccc
Confidence 21112223457899999999754443
No 170
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.50 E-value=7.8e-07 Score=92.68 Aligned_cols=135 Identities=28% Similarity=0.429 Sum_probs=74.1
Q ss_pred EEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccC---CCCc-----hhhHh-h---hHHHHH-h------hhhh
Q 008714 105 IIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRG---CVPS-----KALLA-V---SGRMRE-L------QSEH 164 (556)
Q Consensus 105 vIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g---~ips-----~~l~~-~---~~~~~~-~------~~~~ 164 (556)
+|||||++|++||+.|++.|++|+|+|| +.+|+.+...| |..+ ..+.. . ...... + ....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999 66776543222 2111 11100 0 000000 0 0112
Q ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c--CCEEEEccceEEEeCeEEEeC
Q 008714 165 HMKALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G--PQKVKFGTDNIVTAKDIIIAT 239 (556)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~--~~~v~~~~~~~~~~d~lViAt 239 (556)
.+..+|.+....... .+.. .......+...+.+.+++.|++++.+..+ .+ + ...+.+ ++.++.+|.||+|+
T Consensus 81 ~~~~~Gv~~~~~~~g--~~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAt 156 (400)
T TIGR00275 81 FFESLGLELKVEEDG--RVFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILAT 156 (400)
T ss_pred HHHHcCCeeEEecCC--EeEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECC
Confidence 334445432211000 0000 00012345556666777789999887543 21 1 223444 34679999999999
Q ss_pred CCCC
Q 008714 240 GSVP 243 (556)
Q Consensus 240 G~~p 243 (556)
|...
T Consensus 157 G~~s 160 (400)
T TIGR00275 157 GGLS 160 (400)
T ss_pred CCcc
Confidence 9753
No 171
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.50 E-value=3.4e-06 Score=87.99 Aligned_cols=36 Identities=33% Similarity=0.632 Sum_probs=32.8
Q ss_pred CccEEEECCChHHHHHHHHHHHc--CCeEEEecCC-cCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGD-VVG 136 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~-~~G 136 (556)
++||+|||||.+|+++|++|+++ |++|+||||. .+|
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 48999999999999999999999 9999999994 454
No 172
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.49 E-value=1.8e-07 Score=70.89 Aligned_cols=36 Identities=36% Similarity=0.630 Sum_probs=33.0
Q ss_pred EECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 106 IIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 106 IIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
|||||++||++|..|++.|++|+|+|+ +.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 899999999999999999999999999 889998763
No 173
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.49 E-value=5.3e-06 Score=88.28 Aligned_cols=46 Identities=28% Similarity=0.544 Sum_probs=38.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecCCcCC--ccccccCCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDVVG--GTCVNRGCV 145 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~~~G--G~~~~~g~i 145 (556)
.++||+|||||..|+++|++|++. |.+|+|+|++.+| .+..+.|++
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~ 72 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCM 72 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccc
Confidence 458999999999999999999998 8999999996653 444466654
No 174
>PRK08244 hypothetical protein; Provisional
Probab=98.47 E-value=4.6e-07 Score=97.40 Aligned_cols=32 Identities=41% Similarity=0.564 Sum_probs=31.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
++||+||||||+|+++|..|++.|++|+||||
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr 33 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIER 33 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 48999999999999999999999999999999
No 175
>PRK08013 oxidoreductase; Provisional
Probab=98.45 E-value=1.1e-06 Score=91.89 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=74.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC---cc-ccccC-C-CC-chhhHhhhHHHHHhhhh--hhhhhcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG---GT-CVNRG-C-VP-SKALLAVSGRMRELQSE--HHMKALG 170 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G---G~-~~~~g-~-ip-s~~l~~~~~~~~~~~~~--~~~~~~g 170 (556)
++||+||||||+|+++|..|++.|++|+|||+ +.+. |. ..... + .| +..++...+..+.+... ..+....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 48999999999999999999999999999999 4321 11 00000 0 11 12222222222221110 0000000
Q ss_pred ccc----cccccCHHHHH-HHHH--HHHHHHHHHHHHHHHHc-CcEEEeceEEE-e--cC--CEEEEccceEEEeCeEEE
Q 008714 171 LQV----HAAGYDRQGVA-DHAN--NLATKIRNNLTNSMKAL-GVDILTGVGTI-L--GP--QKVKFGTDNIVTAKDIII 237 (556)
Q Consensus 171 ~~~----~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-gv~~~~g~~~~-~--~~--~~v~~~~~~~~~~d~lVi 237 (556)
+.. ....++..... .+.. -....+...+.+.+.+. +++++.+.... . +. ..+.+.+++++++|.||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVg 162 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVG 162 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEE
Confidence 000 00000000000 0000 00133445555555554 79998876542 1 22 345556778899999999
Q ss_pred eCCCCCCC
Q 008714 238 ATGSVPFV 245 (556)
Q Consensus 238 AtG~~p~~ 245 (556)
|.|.+..+
T Consensus 163 ADG~~S~v 170 (400)
T PRK08013 163 ADGANSWL 170 (400)
T ss_pred eCCCCcHH
Confidence 99987543
No 176
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.44 E-value=3e-07 Score=95.80 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..+||+|||||++|+++|..|++.|++|+|||+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 3589999999999999999999999999999993
No 177
>PRK09126 hypothetical protein; Provisional
Probab=98.44 E-value=4.8e-07 Score=94.33 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=31.6
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
++||+||||||+|+++|..|++.|++|+|+||.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 589999999999999999999999999999993
No 178
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.44 E-value=4.2e-06 Score=87.01 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe-cCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI-DAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
.++.+.+.+.+.+..+|+++.++.++.++.+++ .+.+++. +| +++.+|+||-|-|.....
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~v~l~~dG------~~~~a~llVgADG~~S~v 164 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVTVTLSFDG------ETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceEEEEcCCC------cEEecCEEEECCCCchHH
Confidence 346677777776635599999999999998643 3557777 76 589999999999975543
No 179
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.43 E-value=7.5e-06 Score=89.43 Aligned_cols=43 Identities=44% Similarity=0.735 Sum_probs=38.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNR 142 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~ 142 (556)
.++||+|||+|.+|+++|..+++.|++|+|||| ..+||.+...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s 58 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence 468999999999999999999999999999999 6788887643
No 180
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.42 E-value=6.6e-07 Score=91.55 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
+||+|||||++|+++|..|++.|++|+||||
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 7999999999999999999999999999999
No 181
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.42 E-value=7e-07 Score=93.22 Aligned_cols=35 Identities=31% Similarity=0.619 Sum_probs=32.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~ 135 (556)
..||+|||||++|+++|..|++.|++|+|+|| +.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 47999999999999999999999999999999 443
No 182
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.41 E-value=1.1e-05 Score=83.83 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
+||+|||||.+|+++|++|++.|++|+|||+...
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5999999999999999999999999999999543
No 183
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.41 E-value=1.2e-05 Score=84.19 Aligned_cols=37 Identities=32% Similarity=0.584 Sum_probs=32.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHc-CC-eEEEecCCcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK-GL-KTAIIEGDVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~-g~-~V~viEk~~~G 136 (556)
..+||+|||||..|+++|++|++. |. +|+||||..+|
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 358999999999999999999996 85 89999996554
No 184
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.41 E-value=9.6e-07 Score=90.93 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=32.2
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCCc
Q 008714 103 DLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVGG 137 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~GG 137 (556)
||+|||||+||+++|..|++. |++|+|+|+ +..+|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999987 999999999 56665
No 185
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.41 E-value=1.5e-05 Score=83.60 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=36.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCc-CC--ccccccCCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-VG--GTCVNRGCV 145 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~-~G--G~~~~~g~i 145 (556)
+||+|||||..|+++|.+|++.|++|+|+||+. +| .++.+.|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~ 48 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQL 48 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEE
Confidence 699999999999999999999999999999954 44 333355544
No 186
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.41 E-value=1.3e-06 Score=91.47 Aligned_cols=145 Identities=15% Similarity=0.233 Sum_probs=74.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCCccc-cccCCCCch--hhHhhhHHHHHhhhhh-hhhhcCcc-
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTC-VNRGCVPSK--ALLAVSGRMRELQSEH-HMKALGLQ- 172 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~GG~~-~~~g~ips~--~l~~~~~~~~~~~~~~-~~~~~g~~- 172 (556)
+|||+||||||+|+++|+.|++.| ++|+|||+ +...... .....+... .++..-+..+.+.... ......+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 389999999999999999999995 99999999 3311000 000011111 1121111111111000 00000000
Q ss_pred -----c-cc--cccCHHHH--HHHH-HHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEE
Q 008714 173 -----V-HA--AGYDRQGV--ADHA-NNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDII 236 (556)
Q Consensus 173 -----~-~~--~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lV 236 (556)
. .. ..++.... ..+. .-....+...+.+.+.+.|++++.+... .. +. ..+.+.++.++.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEE
Confidence 0 00 00000000 0000 0012445566666777789999877543 11 22 34555677789999999
Q ss_pred EeCCCCCCC
Q 008714 237 IATGSVPFV 245 (556)
Q Consensus 237 iAtG~~p~~ 245 (556)
.|+|.++.+
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999987653
No 187
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.40 E-value=5.8e-07 Score=93.39 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=31.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 379999999999999999999999999999983
No 188
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.40 E-value=1.7e-06 Score=90.52 Aligned_cols=33 Identities=39% Similarity=0.577 Sum_probs=31.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.+||+|||||++|+++|..|++.|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 489999999999999999999999999999983
No 189
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.38 E-value=5.7e-06 Score=87.56 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=66.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..+++.|.+|++||+ +.+.. ..+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------------------~~~- 197 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP---------------------------------------REE- 197 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC---------------------------------------CCC-
Confidence 4799999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEE-EccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVK-FGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~-~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+... .+ +...+. ..++.++.+|.||+|+|..|...
T Consensus 198 -----------~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 198 -----------PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 122233445667789999987532 22 222332 23456899999999999998864
No 190
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.38 E-value=2.1e-06 Score=89.63 Aligned_cols=34 Identities=38% Similarity=0.531 Sum_probs=31.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHc---CCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK---GLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk~ 133 (556)
.++||+|||||++|+++|+.|++. |++|+||||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999998 9999999993
No 191
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.38 E-value=2e-06 Score=90.46 Aligned_cols=38 Identities=29% Similarity=0.431 Sum_probs=32.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
.++||||||+|.||++||+.++ .|.+|+|||| ...||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4589999999999999999985 6999999999 554543
No 192
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=1.2e-06 Score=90.21 Aligned_cols=138 Identities=26% Similarity=0.335 Sum_probs=77.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC--CcCCcccccc--CCCCchhhH----hhhHHHHHhhhhhhhhhcCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG--DVVGGTCVNR--GCVPSKALL----AVSGRMRELQSEHHMKALGL 171 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk--~~~GG~~~~~--g~ips~~l~----~~~~~~~~~~~~~~~~~~g~ 171 (556)
..|||+|||||.||+.||..++|.|++++++.- +.+|-..+|. |.+-+..+. ...+.+... ...-++
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~-----~D~~~I 77 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKA-----ADKAGI 77 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHh-----hhhcCC
Confidence 349999999999999999999999999999986 5566332221 112111111 112222111 111222
Q ss_pred cccccccC-HHHHHH-HHHHHHHHHHHHHHHHHHH-cCcEEEeceEEEe---c---CCEEEEccceEEEeCeEEEeCCCC
Q 008714 172 QVHAAGYD-RQGVAD-HANNLATKIRNNLTNSMKA-LGVDILTGVGTIL---G---PQKVKFGTDNIVTAKDIIIATGSV 242 (556)
Q Consensus 172 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~-~gv~~~~g~~~~~---~---~~~v~~~~~~~~~~d~lViAtG~~ 242 (556)
+.....-. .+.++. +.+.-...+..+++..++. .++.++.+.+... + ...|.+.+|..+.++.||++||..
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 21111000 011111 1111112334455555544 3888888877622 2 246778889999999999999964
No 193
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.37 E-value=5.3e-06 Score=85.94 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=33.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG 136 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~G 136 (556)
++||+|||||..|+++|.+|++.|++|+||||+..+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 589999999999999999999999999999995543
No 194
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.37 E-value=1.9e-06 Score=89.56 Aligned_cols=30 Identities=43% Similarity=0.725 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
||+|||||++|+++|..|++.|++|+|+||
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er 30 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEA 30 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeC
Confidence 799999999999999999999999999999
No 195
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.34 E-value=6.4e-06 Score=87.83 Aligned_cols=94 Identities=29% Similarity=0.395 Sum_probs=66.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++|+ +.+. | .++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l---------~------------------------------~~~- 210 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL---------P------------------------------GED- 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC---------C------------------------------CCC-
Confidence 5899999999999999999999999999998 3211 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE---ecCCEE--EEccc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI---LGPQKV--KFGTD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~---~~~~~v--~~~~~--~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+.... .+...+ ...++ .++.+|.||+|+|..|...
T Consensus 211 -----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 211 -----------AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 1222334456677899999886432 123333 33344 4799999999999998765
No 196
>PRK06185 hypothetical protein; Provisional
Probab=98.34 E-value=2.2e-06 Score=89.84 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..++||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 35689999999999999999999999999999983
No 197
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.33 E-value=2.8e-06 Score=88.18 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=72.3
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcCCcc-c---cccCCCCc-hhhHhhhHHHHHhhhh-hhhhhcCccc-
Q 008714 103 DLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVGGT-C---VNRGCVPS-KALLAVSGRMRELQSE-HHMKALGLQV- 173 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~GG~-~---~~~g~ips-~~l~~~~~~~~~~~~~-~~~~~~g~~~- 173 (556)
||+||||||+|+++|..|++.| ++|+|+|| ....-. + .-.++.|. ...+...+..+.+... .....+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999 322100 0 00111221 1111111111111100 0000000000
Q ss_pred ---cccccCHHHHHHHH---HHHHHHHHHHHHHHHHH-cCcEEEeceEE-Ee--c--CCEEEEccceEEEeCeEEEeCCC
Q 008714 174 ---HAAGYDRQGVADHA---NNLATKIRNNLTNSMKA-LGVDILTGVGT-IL--G--PQKVKFGTDNIVTAKDIIIATGS 241 (556)
Q Consensus 174 ---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~gv~~~~g~~~-~~--~--~~~v~~~~~~~~~~d~lViAtG~ 241 (556)
....++........ .-....+...+.+.+.. .|++++.+... .. + ..++.+.++.++.+|.||.|.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence 00000000000000 00013455566666666 48999876543 21 2 23455666778999999999997
Q ss_pred CCC
Q 008714 242 VPF 244 (556)
Q Consensus 242 ~p~ 244 (556)
...
T Consensus 161 ~S~ 163 (382)
T TIGR01984 161 NSK 163 (382)
T ss_pred ChH
Confidence 743
No 198
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.33 E-value=7.7e-07 Score=92.59 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=30.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+||+|||||++|+++|..|++.|++|+|||+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence 37999999999999999999999999999999
No 199
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.31 E-value=3.8e-06 Score=86.98 Aligned_cols=32 Identities=38% Similarity=0.630 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 79999999999999999999999999999983
No 200
>PRK07045 putative monooxygenase; Reviewed
Probab=98.31 E-value=2e-06 Score=89.55 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=31.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..+||+||||||+|+++|+.|++.|++|+|+|+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 458999999999999999999999999999998
No 201
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=3e-05 Score=84.99 Aligned_cols=39 Identities=38% Similarity=0.543 Sum_probs=34.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~ 138 (556)
.++||||||+|.||++||+.+++.|.+|+||||. ..+|.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4589999999999999999999999999999994 44443
No 202
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.30 E-value=1.1e-06 Score=95.39 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=32.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~ 135 (556)
..+||+||||||+|+++|..|++.|++|+|||| ..+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 458999999999999999999999999999999 444
No 203
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=4.6e-06 Score=91.84 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=34.1
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG 136 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G 136 (556)
..++||+|||+|.||++||+.+++.|.+|+|||| ..+|
T Consensus 33 ~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 33 KRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3568999999999999999999999999999998 5554
No 204
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.28 E-value=1.4e-06 Score=90.80 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=30.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+||+||||||+|+++|+.|++.|++|+|+|+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~ 33 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 47999999999999999999999999999999
No 205
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.28 E-value=8.4e-06 Score=89.33 Aligned_cols=247 Identities=19% Similarity=0.168 Sum_probs=139.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
+++|.|||+|+.|+-.|..|.+.|..|++++|.+++- |. +|+.+.+.-..++++ .||+++.|+.|-+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~-egi~f~tn~eigk--- 1860 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQ-EGIRFVTNTEIGK--- 1860 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHh-hCceEEeeccccc---
Confidence 5899999999999999999999999999999999863 33 677777777777877 8999999865421
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCCCc---ccccccCCCce------eeCCCCccccCCCCcC
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLGLE---NINVVTQRGFV------PVDERMRVIDANGNLV 410 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~---~~~~~~~~G~i------~vd~~l~~~~~~~t~~ 410 (556)
. +.+ |+ -.-+.|.|++|+|..-..+ |.+. ..|+.+..-++ ..|..+. .++-...-
T Consensus 1861 -----~--vs~-d~------l~~~~daiv~a~gst~prd-lpv~grd~kgv~fame~l~~ntk~lld~~~d-~~~~~~~g 1924 (2142)
T KOG0399|consen 1861 -----H--VSL-DE------LKKENDAIVLATGSTTPRD-LPVPGRDLKGVHFAMEFLEKNTKSLLDSVLD-GNYISAKG 1924 (2142)
T ss_pred -----c--ccH-HH------HhhccCeEEEEeCCCCCcC-CCCCCccccccHHHHHHHHHhHHhhhccccc-cceeccCC
Confidence 1 222 11 3446799999999743332 1111 11121111111 1222210 00001233
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHH--hCCCccCCCCCccEEEecccceeEecCCHHHHHHhhhhcCceEEEEEE
Q 008714 411 PHLYCIGDANGKMMLAHAASAQGISVVEQV--TGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKT 488 (556)
Q Consensus 411 ~~Vya~GD~~~~~~~~~~A~~qg~~aa~~i--~g~~~~~~~~~~p~~~~~~~~i~~vG~te~~a~~~~~~~~~~~~~~~~ 488 (556)
+.|.++|---.+.....+..+.|..-..|+ +-.+.+-.-..-||- ..|-+-.|-+..+|+++.|++.--.|.+...
T Consensus 1925 kkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwp--qwprvfrvdygh~e~~~~~g~dpr~y~vltk 2002 (2142)
T KOG0399|consen 1925 KKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWP--QWPRVFRVDYGHAEAKEHYGSDPRTYSVLTK 2002 (2142)
T ss_pred CeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCc--cCceEEEeecchHHHHHHhCCCcceeeeeee
Confidence 557777632111122223334443222222 222211111223332 2366778999999999998777777777766
Q ss_pred eccccchhhhcCCcce--EEEEEEcCCCCCccceEEEeCCCchHH--HHHHHHhhhccch
Q 008714 489 SFKANTKALAENEGEG--LAKGVPRNFASSERTNQHSDRPSKPNL--VKKLADVYMTFVS 544 (556)
Q Consensus 489 ~~~~~~~a~~~~~~~g--~~kli~~~~~~~~~~g~~~~g~~~~~~--~~~l~~~~~~~~~ 544 (556)
.|..+.. +...| .+++-..++.+++ + ++.-++..+- -.||..++|.|.+
T Consensus 2003 ~f~~~~~----g~v~gl~~vrvew~k~~~g~-w--~~~ei~~see~~eadlv~lamgf~g 2055 (2142)
T KOG0399|consen 2003 RFIGDDN----GNVTGLETVRVEWEKDDKGR-W--QMKEINNSEEIIEADLVILAMGFVG 2055 (2142)
T ss_pred eeeccCC----CceeeEEEEEEEEEecCCCc-e--EEEEcCCcceeeecceeeeeccccC
Confidence 6655433 22223 3455566643333 3 3444333333 3677788888764
No 206
>PRK07236 hypothetical protein; Provisional
Probab=98.28 E-value=6.6e-06 Score=85.59 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=31.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..||+|||||++|+++|..|++.|++|+|+||
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 47999999999999999999999999999999
No 207
>PRK07588 hypothetical protein; Provisional
Probab=98.27 E-value=1.6e-06 Score=90.46 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
||+|||||++|+++|+.|++.|++|+|+||
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 799999999999999999999999999998
No 208
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.27 E-value=2.9e-06 Score=92.39 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~ 135 (556)
..+||+||||||+|+++|..|++.|++|+|||| ..+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 558999999999999999999999999999999 433
No 209
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.26 E-value=1.1e-05 Score=63.35 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
+|+|||||+.|+.+|..|+++|.+|+||++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEec
Confidence 489999999999999999999999999998
No 210
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.25 E-value=5.5e-05 Score=83.12 Aligned_cols=40 Identities=40% Similarity=0.477 Sum_probs=34.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTC 139 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~ 139 (556)
.++||||||||.||++||+++++.|.+|+|||| ...+|.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 468999999999999999999999999999999 4445543
No 211
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.25 E-value=5.6e-05 Score=83.10 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=34.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
.++||||||+|.||+.||+++++.|.+|+|||| ...+|.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 458999999999999999999999999999999 444543
No 212
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.25 E-value=4.5e-05 Score=83.33 Aligned_cols=46 Identities=35% Similarity=0.654 Sum_probs=38.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc-ccCCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV-NRGCV 145 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~-~~g~i 145 (556)
.++||||||+|.||++||+.+++.|.+|+|||| ...||.+. ..|.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i 57 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGI 57 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCc
Confidence 458999999999999999999999999999999 56677433 44443
No 213
>PRK06126 hypothetical protein; Provisional
Probab=98.25 E-value=1.3e-05 Score=87.22 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=32.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
+..+||+||||||+|+++|..|++.|++|+||||
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr 38 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVER 38 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 3458999999999999999999999999999998
No 214
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=7e-05 Score=81.99 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=34.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
.++||||||+|.||+.||+.+++.|.+|+|||| ...+|.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 458999999999999999999999999999999 444443
No 215
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.24 E-value=5e-06 Score=90.34 Aligned_cols=55 Identities=40% Similarity=0.779 Sum_probs=45.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccccc-CC--CCchhhHhhhH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNR-GC--VPSKALLAVSG 155 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~-g~--ips~~l~~~~~ 155 (556)
++||||||+|.+|++||+.+++.|.+|+|||| ..+||+|... || +|.+.+....+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g 64 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAG 64 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcC
Confidence 58999999999999999999999999999999 5778887644 45 56666554433
No 216
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.24 E-value=6.5e-06 Score=85.89 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=68.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+|||+ +.+.+.. .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~--------------------------------------~-- 184 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN--------------------------------------A-- 184 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh--------------------------------------c--
Confidence 5799999999999999999999999999998 3321110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee-cC--CEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL-GP--QKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~-~~--~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
.+.+...+.+.+++.||+++.+... .. .. ..+.+.+++++.+|.||+|+|..|+.
T Consensus 185 ----------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 185 ----------PPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred ----------CHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 0223344555667789999987643 22 12 23556677889999999999999864
No 217
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.24 E-value=5.5e-05 Score=79.49 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVG 136 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~G 136 (556)
||+|||||.+|+++|.+|++.|.+|+|+|++ .++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~ 36 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA 36 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchh
Confidence 7999999999999999999999999999994 443
No 218
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.23 E-value=2.3e-05 Score=82.95 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------------------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM------------------------------------------- 305 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll------------------------------------------- 305 (556)
+++|+|||+|++|+-.|..|.+.|.+|+++++++.+-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 5899999999999999999999999999999765321
Q ss_pred --CCCC---------------HHHHHHHHHHHhCCCceE--EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 306 --PGFD---------------PEIGKLAQRVLINPRKID--YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 306 --~~~d---------------~~~~~~~~~~l~~~~gV~--~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
|..+ .++.++++++.++ .|+. +.+++.|++|+..+ ....|+..++. +...+..+|.
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~-fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~--~~~~~~~~d~ 164 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFARE-FKIEEMVRFETEVVRVEPVD--GKWRVQSKNSG--GFSKDEIFDA 164 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHH-cCCcceEEecCEEEEEeecC--CeEEEEEEcCC--CceEEEEcCE
Confidence 1000 3455667776665 7877 88999999998743 34566665431 1123567999
Q ss_pred EEEeeC--CCCCCC
Q 008714 367 ALIATG--RAPFTN 378 (556)
Q Consensus 367 vi~a~G--~~p~~~ 378 (556)
||+|+| ..|+..
T Consensus 165 VIvAtG~~~~P~~P 178 (461)
T PLN02172 165 VVVCNGHYTEPNVA 178 (461)
T ss_pred EEEeccCCCCCcCC
Confidence 999999 466654
No 219
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=4.9e-05 Score=83.10 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=33.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
++||||||+|.||++||+++++.|.+|+|||| ...+|.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 58999999999999999999999999999999 444443
No 220
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.23 E-value=9.4e-06 Score=85.81 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=70.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|++.|.+|+|+++ +.+.. .++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------------~~d- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------------LMD- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------------hcC-
Confidence 4799999999999999999999999999997 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecCCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGPQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+++...+.+.+++.||+++.+... .++...+.+.+++++.+|.|++|+|.+|+..
T Consensus 189 -----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 189 -----------ADMNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred -----------HHHHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChH
Confidence 223344555677789999987543 3445567777777899999999999998753
No 221
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.22 E-value=1.3e-05 Score=80.16 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=76.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-------------------------------------CCC---
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-------------------------------------GFD--- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-------------------------------------~~d--- 309 (556)
..|+|||+|+.|+-.|..+++.|.+|+++++++.+.. .|+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4699999999999999999999999999988764321 011
Q ss_pred ---------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE
Q 008714 310 ---------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362 (556)
Q Consensus 310 ---------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i 362 (556)
.++.+.+...+++ .||++++++.+.+|+.++ ....+.+.+| .++
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~-~gV~i~~~~~v~~v~~~~--~~f~l~t~~g------~~i 154 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEA-LGVTIRTRSRVSSVEKDD--SGFRLDTSSG------ETV 154 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHH-cCcEEEecceEEeEEecC--ceEEEEcCCC------CEE
Confidence 2344666667776 899999999999999864 3356766665 589
Q ss_pred ecCEEEEeeC--CCCC
Q 008714 363 EVDAALIATG--RAPF 376 (556)
Q Consensus 363 ~~D~vi~a~G--~~p~ 376 (556)
.||.+|+|+| .-|.
T Consensus 155 ~~d~lilAtGG~S~P~ 170 (408)
T COG2081 155 KCDSLILATGGKSWPK 170 (408)
T ss_pred EccEEEEecCCcCCCC
Confidence 9999999999 4453
No 222
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.20 E-value=3.6e-05 Score=79.39 Aligned_cols=43 Identities=42% Similarity=0.647 Sum_probs=35.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC--CccccccCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV--GGTCVNRGC 144 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~--GG~~~~~g~ 144 (556)
+||+|||||.+|+++|.+|++.|.+|+|+|+..+ |.+..+.|.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~ 45 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQ 45 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCce
Confidence 5999999999999999999999999999999544 333334443
No 223
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.20 E-value=1.4e-06 Score=93.04 Aligned_cols=40 Identities=43% Similarity=0.713 Sum_probs=37.4
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
.+||||||||++||+||..|+++|++|+|+|| ..+||.+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceE
Confidence 58999999999999999999999999999999 78888766
No 224
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.20 E-value=7.1e-05 Score=72.86 Aligned_cols=165 Identities=23% Similarity=0.202 Sum_probs=100.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-------------------------------------CC-HH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------------------------------------FD-PE 311 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-------------------------------------~d-~~ 311 (556)
-.|+|||+|+.|+-.|..+++.|.+|.++++...+-.. .+ .+
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~ 105 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVE 105 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHH
Confidence 57999999999999999999999999999987643110 01 12
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCC-----CCCCCceEecCEEEEeeCCCCCCC-CC-----
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK-----TKEPKDTLEVDAALIATGRAPFTN-GL----- 380 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~-----~~~~~~~i~~D~vi~a~G~~p~~~-~l----- 380 (556)
+...+.+...+ .|++++.++.+.++..+++++...+...+.. ...+..++.++.||.|+|...... .+
T Consensus 106 l~~~L~~~A~~-~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 106 AAAKLAAAAID-AGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHH-cCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 33344444455 7999999999999876544454444432210 111235799999999999643321 00
Q ss_pred --CCcccccc---cCCC-ceeeCCCCccccCCCCcCCCEEEecccC----CCCCc---HHHHHHHHHHHHHHHhC
Q 008714 381 --GLENINVV---TQRG-FVPVDERMRVIDANGNLVPHLYCIGDAN----GKMML---AHAASAQGISVVEQVTG 442 (556)
Q Consensus 381 --~l~~~~~~---~~~G-~i~vd~~l~~~~~~~t~~~~Vya~GD~~----~~~~~---~~~A~~qg~~aa~~i~g 442 (556)
.....|.. .+.| ...|+..- .-+|++|++|=++ +.|+. -..-...|+.||+.|+.
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~-------~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTG-------EVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCC-------eEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 01111110 0111 12233333 3479999999774 33433 22334678888887763
No 225
>PRK06996 hypothetical protein; Provisional
Probab=98.20 E-value=6.1e-06 Score=86.19 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=31.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcC----CeEEEecCC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKG----LKTAIIEGD 133 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g----~~V~viEk~ 133 (556)
+..+||+||||||+|+++|..|++.| ++|+|||+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~ 47 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR 47 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence 34589999999999999999999986 579999994
No 226
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.18 E-value=3.4e-06 Score=89.15 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHH----cCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVE----KGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~----~g~~V~viEk 132 (556)
|||+||||||+|+++|..|++ .|++|+|||+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~ 35 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA 35 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence 699999999999999999999 7999999998
No 227
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.18 E-value=1.1e-05 Score=84.41 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
.++.+.+.+.++. .|.++++++.|++|..+++++.+.|++.+| +++.++.||....+.|..
T Consensus 232 g~L~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~G------e~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 232 GGLPQAFSRLCAI-YGGTYMLNTPVDEVVFDENGKVCGVKSEGG------EVAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHHHHHHHHHHH-cCcEEEcCCeEEEEEEcCCCeEEEEEECCC------cEEECCEEEECccccccc
Confidence 4577777777776 889999999999998765566677888777 688999999988887763
No 228
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.16 E-value=9.5e-06 Score=76.13 Aligned_cols=97 Identities=24% Similarity=0.316 Sum_probs=65.0
Q ss_pred EEEcCchhHHHHHHHHHhCCCe-EEEEEeCCCCC--------------CC-C------------C---------------
Q 008714 273 AIVGSGYIGLEFSDVYTALGSE-VTFIEALDQLM--------------PG-F------------D--------------- 309 (556)
Q Consensus 273 ~VvG~G~~g~e~A~~l~~~g~~-Vtli~~~~~ll--------------~~-~------------d--------------- 309 (556)
+|||+|+.|+-+|..|.+.|.+ |+++++++.+. |. + .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 99999885431 11 0 0
Q ss_pred -HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC--CCCCC
Q 008714 310 -PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR--APFTN 378 (556)
Q Consensus 310 -~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~~ 378 (556)
+++.+++++..++ .+++++++++|+++..++++ ..|++.++ .++.+|.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~-~~l~i~~~~~V~~v~~~~~~--w~v~~~~~------~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAER-FGLEIRFNTRVESVRRDGDG--WTVTTRDG------RTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHH-TTGGEETS--EEEEEEETTT--EEEEETTS-------EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhh-cCcccccCCEEEEEEEeccE--EEEEEEec------ceeeeeeEEEeeeccCCCCcc
Confidence 2344666666666 88999999999999987544 77888776 68899999999996 56544
No 229
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.14 E-value=1.8e-05 Score=82.79 Aligned_cols=95 Identities=26% Similarity=0.383 Sum_probs=71.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
..++|||||+.|+..|..++++|.+|+|||+ +.+ +| .+|
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i---------Lp------------------------------~~D- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI---------LP------------------------------GED- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC---------CC------------------------------cCC-
Confidence 5799999999999999999999999999998 331 11 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe---cC--CEEEEccce--EEEeCeEEEeCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL---GP--QKVKFGTDN--IVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~--~~v~~~~~~--~~~~d~lViAtG~~p~~p~ 247 (556)
+++.+.+.+.+++.|++++.+..... .. -.+.+.++. ++.+|.+++|+|-+|+...
T Consensus 214 -----------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 214 -----------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred -----------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 44556666677777899998876522 12 234555544 6899999999999998774
No 230
>PRK06753 hypothetical protein; Provisional
Probab=98.14 E-value=5.2e-06 Score=85.89 Aligned_cols=30 Identities=40% Similarity=0.618 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
||+|||||++|+++|+.|++.|++|+|+||
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 799999999999999999999999999999
No 231
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.13 E-value=1.2e-05 Score=85.35 Aligned_cols=101 Identities=26% Similarity=0.313 Sum_probs=70.5
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCC------CCC----C-C--HHHHHHHHHHHhCCCceEEEcCceE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQL------MPG----F-D--PEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~l------l~~----~-d--~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
++|+|||+|+.|+.+|..|++++ .+|+++++.+.+ ++. . + .++.....+.+++ .||+++.+..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIK-SGIDVKTEHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHH-CCCeEEecCEE
Confidence 47999999999999999999876 589999988753 221 1 1 1122223445665 79999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEe--cCEEEEeeCCCCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLE--VDAALIATGRAPFTN 378 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~--~D~vi~a~G~~p~~~ 378 (556)
.+|+.+ ++. +.+.+.. .+.+++ +|.+|+|||.+|+..
T Consensus 80 ~~id~~--~~~--v~~~~~~---~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 80 VKVDAK--NKT--ITVKNLK---TGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEECC--CCE--EEEEECC---CCCEEEecCCEEEECCCCCCCCC
Confidence 999764 333 3343310 113455 999999999998754
No 232
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.13 E-value=1.4e-05 Score=87.42 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=33.2
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGT 138 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~ 138 (556)
.+||||||+|.||++||+++++.|.+|+|||| ...||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 36999999999999999999999999999999 444443
No 233
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.13 E-value=3.2e-05 Score=90.95 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=39.4
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..+.++||||||+|.||++||+++++.|.+|+|||| +..||.+.
T Consensus 405 ~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 405 AGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred ccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 456779999999999999999999999999999999 77888654
No 234
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.13 E-value=2.9e-05 Score=83.73 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=77.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC--CCCC-----------C-CCCHHHHHHHHHHHhCCCceEEEcCce
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--DQLM-----------P-GFDPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~--~~ll-----------~-~~d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
.+.+|+|||||+.|+..|..+++.|.+|+++... .++. + ...+++.+.+.+.+++ .||+++.++.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-~gv~i~~~~~ 289 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQ-YPIDLMENQR 289 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHH-hCCeEEcCCE
Confidence 3578999999999999999999999999999631 1111 1 1345667777777876 8999999999
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
+.++...+ ....+++.++ ..+.+|.+++|+|..|..
T Consensus 290 V~~I~~~~--~~~~v~~~~g------~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 290 AKKIETED--GLIVVTLESG------EVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEEecC--CeEEEEECCC------CEEEeCEEEECCCCCcCC
Confidence 99997643 2345666555 579999999999998754
No 235
>PLN02985 squalene monooxygenase
Probab=98.13 E-value=9.7e-06 Score=87.00 Aligned_cols=36 Identities=42% Similarity=0.631 Sum_probs=32.9
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
....+||+|||||++|+++|..|++.|.+|+|+||.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 345689999999999999999999999999999993
No 236
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.12 E-value=1.8e-05 Score=83.68 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeceEEEe----cC--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 192 TKIRNNLTNSMKALGVDILTGVGTIL----GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 192 ~~~~~~~~~~~~~~gv~~~~g~~~~~----~~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...|.+...+.||+++.+.++.+ +. ..|.+.+++++++|.+|=|||....+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCC
T ss_pred HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhh
Confidence 46777888888889999999986533 12 256677889999999999999765443
No 237
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.12 E-value=1.5e-05 Score=82.59 Aligned_cols=94 Identities=15% Similarity=0.293 Sum_probs=67.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++++ +.+... .++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~- 182 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS--------------------------------------LMP- 182 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch--------------------------------------hCC-
Confidence 5799999999999999999999999999998 321100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c--CCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G--PQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~--~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
+.+...+.+.+++.||+++.+... .. + ...+.+.++.++.+|.||+|+|..|+.
T Consensus 183 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 183 -----------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 122334455667789999877533 22 1 224666778899999999999998863
No 238
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.12 E-value=7.7e-06 Score=82.97 Aligned_cols=42 Identities=38% Similarity=0.623 Sum_probs=39.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
...||||||+|.+||++|..|.+.|++|+|+|. +.+||+|..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 457999999999999999999999999999998 999999873
No 239
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.11 E-value=4.4e-05 Score=85.06 Aligned_cols=44 Identities=30% Similarity=0.524 Sum_probs=35.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cC--CccccccCC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VV--GGTCVNRGC 144 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~--GG~~~~~g~ 144 (556)
.+||+|||||.+|+++|.+|++.|.+|+|||+. .+ |.+..+.|.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~ 306 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGA 306 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccc
Confidence 479999999999999999999999999999994 44 333444443
No 240
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.11 E-value=2.8e-05 Score=82.70 Aligned_cols=94 Identities=30% Similarity=0.375 Sum_probs=66.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..+++.|.+|+++++ +.+. | ..+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll---------~------------------------------~~d- 210 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL---------P------------------------------GED- 210 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC---------c------------------------------ccc-
Confidence 4799999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEEEEc-cc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKVKFG-TD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v~~~-~~--~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +...+.+. ++ .++.+|.||+|+|..|+..
T Consensus 211 -----------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 211 -----------EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 223344455667789999988643 22 22233332 22 3699999999999998864
No 241
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.10 E-value=2.9e-05 Score=83.84 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=77.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC--CCC--------CCC----CCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--DQL--------MPG----FDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~--~~l--------l~~----~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
...++|||||+.|+..|..+++.|.+|+++... .++ ++. ..+++.+.+.+.+++ .|++++.++.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~gv~i~~~~~V 289 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKE-YDVDIMNLQRA 289 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHH-CCCEEEcCCEE
Confidence 357999999999999999999999999999753 111 111 235677788888876 89999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
.++...+ ....+.+.++ .++.+|.||+|+|..|..
T Consensus 290 ~~I~~~~--~~~~V~~~~g------~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 290 SKLEPAA--GLIEVELANG------AVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEEecC--CeEEEEECCC------CEEEcCEEEECCCCCcCC
Confidence 9998753 2345666555 579999999999998754
No 242
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.09 E-value=2.7e-05 Score=82.17 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=67.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|++|++ +.+... .++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--------------------------------------~~~- 178 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--------------------------------------LFD- 178 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--------------------------------------ccC-
Confidence 4799999999999999999999999999997 321000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Eec--CCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILG--PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .++ ...+.+.++.++.+|.||+|+|.+|..+
T Consensus 179 -----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 179 -----------EEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 123334455667789999987543 222 2223456677899999999999998743
No 243
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=3.6e-06 Score=89.14 Aligned_cols=41 Identities=34% Similarity=0.544 Sum_probs=38.1
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..++|+|||||.|||+||++|.+.|++|+|+|. +++||+..
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 457999999999999999999999999999998 99999865
No 244
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.08 E-value=2.7e-05 Score=83.23 Aligned_cols=94 Identities=24% Similarity=0.390 Sum_probs=66.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||++|+.+|..|++.|.+|+|||+ +.+. | .++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------~------------------------------~~~- 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------P------------------------------TED- 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------C------------------------------cCC-
Confidence 5899999999999999999999999999998 3210 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee----cCCE--EEEccc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----GPQK--VKFGTD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~----~~~~--v~~~~~--~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +... +...++ +++.+|.||+|+|..|...
T Consensus 221 -----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 221 -----------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred -----------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 223334455667789999988643 22 2221 122334 4699999999999998764
No 245
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=2.7e-05 Score=83.00 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=66.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|++.|.+|++||+ +.+. | .++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~------------------------------~~~- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL---------P------------------------------GED- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC---------C------------------------------cCC-
Confidence 5799999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCE--EEEccc---eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQK--VKFGTD---NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~--v~~~~~---~~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+... .+ +... +.+.++ +++.+|.||+|+|..|...
T Consensus 213 -----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 213 -----------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 223334455667789999988543 22 2222 333344 6799999999999998755
No 246
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.07 E-value=3.6e-05 Score=80.49 Aligned_cols=31 Identities=42% Similarity=0.562 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
-+|+|||||++|+++|+.|++.|++|+|+||
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 4799999999999999999999999999998
No 247
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.05 E-value=9.9e-05 Score=78.55 Aligned_cols=38 Identities=32% Similarity=0.382 Sum_probs=32.6
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVG 136 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~G 136 (556)
...+||+|||||..|+++|+.|++.+ .+|+|||| +.++
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 34689999999999999999999973 79999999 4443
No 248
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.05 E-value=2.2e-05 Score=86.78 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..+||||||||.||+.||+.+++.|++|+||||.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~ 37 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV 37 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999999999999999993
No 249
>PRK05868 hypothetical protein; Validated
Probab=98.05 E-value=1.1e-05 Score=83.42 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.||+|||||++|+++|..|++.|++|+|||+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 5899999999999999999999999999998
No 250
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.05 E-value=5.1e-06 Score=84.95 Aligned_cols=41 Identities=29% Similarity=0.592 Sum_probs=38.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNR 142 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~ 142 (556)
+||+|||||++|+++|.+|++.|.+|+|||+ +.+||.|.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 7999999999999999999999999999999 8899988753
No 251
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.05 E-value=3.4e-05 Score=82.22 Aligned_cols=94 Identities=26% Similarity=0.290 Sum_probs=68.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..+++.|.+|+|||+ +.+.. .++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------------~~d- 215 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------------FLD- 215 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------------cCC-
Confidence 5899999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .. +. ..+.+.++.++.+|.||+|+|.+|+..
T Consensus 216 -----------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 216 -----------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 223344555666789999987543 11 12 234455667899999999999998754
No 252
>PRK07208 hypothetical protein; Provisional
Probab=98.04 E-value=4.7e-06 Score=89.34 Aligned_cols=43 Identities=33% Similarity=0.557 Sum_probs=39.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
+.+.||+|||||++||+||..|+++|++|+|+|+ +.+||.|..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 4567999999999999999999999999999999 899998753
No 253
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.04 E-value=1.8e-05 Score=80.04 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=60.5
Q ss_pred HHHhCCCeEEEEE-eCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC
Q 008714 287 VYTALGSEVTFIE-ALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD 365 (556)
Q Consensus 287 ~l~~~g~~Vtli~-~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D 365 (556)
.+...|....++. +.+++-...-+++.+-+.+.+++ .|+++++++.|.+++.. ++....+.+++| .++++|
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~-~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g------~~i~~~ 220 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLES-LGGEIRFNTEVEDIEIE-DNEVLGVKLTKG------EEIEAD 220 (486)
T ss_pred HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHh-cCcEEEeeeEEEEEEec-CCceEEEEccCC------cEEecC
Confidence 3444454443332 33455554667888889999987 99999999999999876 344456777776 799999
Q ss_pred EEEEeeCCCCCC
Q 008714 366 AALIATGRAPFT 377 (556)
Q Consensus 366 ~vi~a~G~~p~~ 377 (556)
.||+|+|+....
T Consensus 221 ~vvlA~Grsg~d 232 (486)
T COG2509 221 YVVLAPGRSGRD 232 (486)
T ss_pred EEEEccCcchHH
Confidence 999999987654
No 254
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.03 E-value=6.6e-05 Score=72.85 Aligned_cols=173 Identities=16% Similarity=0.108 Sum_probs=100.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC----------CC----------------------------CCH
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM----------PG----------------------------FDP 310 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll----------~~----------------------------~d~ 310 (556)
.-.|+|||+|++|+-.|..+++.|.+|.++++.+.+- +. ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 3579999999999999999999999999999876431 10 011
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecCCC-CeEEEEEecCCC-----CCCCceEecCEEEEeeCCCCCCCCCCCcc
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAKDG-KPVTIELIDAKT-----KEPKDTLEVDAALIATGRAPFTNGLGLEN 384 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g-~~~~v~~~~g~~-----~~~~~~i~~D~vi~a~G~~p~~~~l~l~~ 384 (556)
++.+.+.+...+ .|++++.++.+.++..+++. +...+....... ..+..++.++.||.|+|.......+-.+.
T Consensus 101 el~~~L~~~a~e-~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQ-AGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHH-cCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 233444444555 79999999999998765432 344454432110 01125799999999999654321100011
Q ss_pred ccccc------CCCceeeCC-CCccccCCCCcCCCEEEecccC----CCCCc---HHHHHHHHHHHHHHHhC
Q 008714 385 INVVT------QRGFVPVDE-RMRVIDANGNLVPHLYCIGDAN----GKMML---AHAASAQGISVVEQVTG 442 (556)
Q Consensus 385 ~~~~~------~~G~i~vd~-~l~~~~~~~t~~~~Vya~GD~~----~~~~~---~~~A~~qg~~aa~~i~g 442 (556)
.++.. ..+...++. .-.+.+..+.-+|++|++|=.+ +.|+. -..-...|+.||+.|+.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 00000 001111111 0001111114589999999764 33433 22334678888887753
No 255
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.03 E-value=0.00015 Score=78.73 Aligned_cols=35 Identities=34% Similarity=0.627 Sum_probs=32.8
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
.+||+|||||..|+++|+.|++.|++|+|||+..+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 58999999999999999999999999999999554
No 256
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.02 E-value=3.3e-05 Score=80.85 Aligned_cols=94 Identities=28% Similarity=0.415 Sum_probs=70.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+++|||+|+.|+.+|..|+++|++|+++|+ +.+++....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-------------------------------------- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-------------------------------------- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------------------------------
Confidence 36899999999999999999999999999999 655543110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecC--C--E---EEEccceEEEeCeEEEeCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGP--Q--K---VKFGTDNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~--~--~---v~~~~~~~~~~d~lViAtG~~p~ 244 (556)
..+...+.+.++..||+++.+... .++. . . +...++.++.+|.+++++|.+|.
T Consensus 178 ------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 ------------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred ------------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 234455566777889999887653 2221 1 1 45566778999999999999985
No 257
>PRK06847 hypothetical protein; Provisional
Probab=98.02 E-value=5.7e-05 Score=78.21 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=76.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC------------------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------------------------------ 306 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~------------------------------------------ 306 (556)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+.+-+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57899999999999999999999999999987653100
Q ss_pred ---CC-----------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 307 ---GF-----------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 307 ---~~-----------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
.+ .+++.+.+.+.+.+ .|++++.++.+++++.+++ .+.+.+.+| +++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~--~~~v~~~~g------~~~~ad~ 154 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARA-AGADVRLGTTVTAIEQDDD--GVTVTFSDG------TTGRYDL 154 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHH-hCCEEEeCCEEEEEEEcCC--EEEEEEcCC------CEEEcCE
Confidence 00 02334555565655 7899999999999986433 366777766 5799999
Q ss_pred EEEeeCCCCCCC
Q 008714 367 ALIATGRAPFTN 378 (556)
Q Consensus 367 vi~a~G~~p~~~ 378 (556)
||.|.|..+...
T Consensus 155 vI~AdG~~s~~r 166 (375)
T PRK06847 155 VVGADGLYSKVR 166 (375)
T ss_pred EEECcCCCcchh
Confidence 999999877653
No 258
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=1.1e-05 Score=81.30 Aligned_cols=41 Identities=32% Similarity=0.558 Sum_probs=35.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC--CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG--DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk--~~~GG~~~ 140 (556)
..|||||||||.||..||..+++.|.+.+++.. +.+|-..+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msC 69 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSC 69 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeeccccccccccc
Confidence 459999999999999999999999999999987 66665433
No 259
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.02 E-value=4.9e-05 Score=79.97 Aligned_cols=92 Identities=22% Similarity=0.359 Sum_probs=69.0
Q ss_pred ccEEEECCChHHHHHHHHHHH--------------cCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhh
Q 008714 102 YDLIIIGAGVGGHGAALHAVE--------------KGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHM 166 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~--------------~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~ 166 (556)
..++|||||+.|+..|..|++ .+.+|+||++ +.+..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~----------------------------- 224 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG----------------------------- 224 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-----------------------------
Confidence 379999999999999999876 3689999997 33211
Q ss_pred hhcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-EecCCEEEEccceEEEeCeEEEeCCCCCC
Q 008714 167 KALGLQVHAAGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-ILGPQKVKFGTDNIVTAKDIIIATGSVPF 244 (556)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~~~~~~~~~~d~lViAtG~~p~ 244 (556)
.++ +.+...+.+.+++.||+++.+... .++...|.+.+|+++.+|.+|+++|..|.
T Consensus 225 ----------~~~------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 225 ----------SFD------------QALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred ----------cCC------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence 011 233445566777899999977543 45566788888889999999999998875
No 260
>PRK06116 glutathione reductase; Validated
Probab=98.01 E-value=4.4e-05 Score=81.08 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=68.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+..|..|++.|.+|+++++. .+.. .++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~~~- 207 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---------------------------------------GFD- 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---------------------------------------ccC-
Confidence 58999999999999999999999999999973 2100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c-C--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G-P--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~-~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .. + . ..+.+.+++++.+|.||+|+|..|+..
T Consensus 208 -----------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 208 -----------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred -----------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 123344455667789999987543 22 1 1 245556677899999999999998765
No 261
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.01 E-value=4e-05 Score=81.25 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=67.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||+|+.|+.+|..+++.|.+|+++++. .+. | .++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------~------------------------------~~d- 206 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL---------R------------------------------GFD- 206 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC---------c------------------------------ccC-
Confidence 47999999999999999999999999999973 210 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee----cCCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL----GPQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~----~~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+++...+.+.+++.||+++.+... .+ +...+.+.++.++.+|.||+|+|..|+..
T Consensus 207 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 207 -----------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 223334445667789999988532 22 12245555677899999999999998754
No 262
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.00 E-value=2.9e-05 Score=85.58 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=31.8
Q ss_pred CCCccEEEECCChHHHHHHHHHHHc-CCeEEEecC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG 132 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk 132 (556)
+.++||+||||||+||++|+.|++. |.+|+|||+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~ 64 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER 64 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence 4468999999999999999999995 999999998
No 263
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.99 E-value=5.6e-06 Score=93.33 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHc--CCeEEEecCCc
Q 008714 103 DLIIIGAGVGGHGAALHAVEK--GLKTAIIEGDV 134 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk~~ 134 (556)
+|+||||||||+++|+.|++. |++|+|+|+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 799999999999999999998 89999999943
No 264
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.99 E-value=1.8e-05 Score=81.94 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=61.9
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC------------------------------CC--------C---
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------------------GF--------D--- 309 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~------------------------------~~--------d--- 309 (556)
+|+|||||++|+-.|..+++.|.+|+++++++++.. .| +
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 489999999999999999999999999998864421 00 0
Q ss_pred ---------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE
Q 008714 310 ---------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362 (556)
Q Consensus 310 ---------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i 362 (556)
.++.+.+.+.+++ .||+++++++|.+++.. ++....|.+.++ .++
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~-~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~------~~~ 153 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKR-LGVEIHFNTRVKSIEKK-EDGVFGVKTKNG------GEY 153 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHH-HT-EEE-S--EEEEEEE-TTEEEEEEETTT------EEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHH-cCCEEEeCCEeeeeeec-CCceeEeeccCc------ccc
Confidence 1334555666666 89999999999999875 344466776433 689
Q ss_pred ecCEEEEeeCCCC
Q 008714 363 EVDAALIATGRAP 375 (556)
Q Consensus 363 ~~D~vi~a~G~~p 375 (556)
.+|.||+|+|-..
T Consensus 154 ~a~~vILAtGG~S 166 (409)
T PF03486_consen 154 EADAVILATGGKS 166 (409)
T ss_dssp EESEEEE----SS
T ss_pred cCCEEEEecCCCC
Confidence 9999999999754
No 265
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.97 E-value=6e-05 Score=79.94 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=68.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+..|..|++.|.+|+||++ +.+.. .++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~---------------------------------------~~d- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR---------------------------------------SFD- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc---------------------------------------ccC-
Confidence 5899999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c-C--CEEEEccc-eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G-P--QKVKFGTD-NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~-~--~~v~~~~~-~~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+... .+ + . ..+.+.++ .++.+|.+|+|+|..|+..
T Consensus 207 -----------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 207 -----------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 223444555677789999988543 21 1 1 23445555 5799999999999998864
No 266
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.97 E-value=3.9e-05 Score=78.74 Aligned_cols=106 Identities=23% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC---------CCHHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 266 EFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG---------FDPEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 266 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~---------~d~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
...+++|+|||+|+.|+++|..|++.|.+|+++++.+.+... ++.+......+.+.+ .|++++.++.+..
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~-~~i~~~~~~~v~~ 93 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEE-AGVVFHTRTKVCC 93 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHh-CCeEEecCcEEee
Confidence 456789999999999999999999999999999988765321 233333334455555 6999999987765
Q ss_pred EEe--cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC-CCC
Q 008714 337 ITP--AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APF 376 (556)
Q Consensus 337 i~~--~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~ 376 (556)
+.. ..+.........+. +...+.+|.||+|+|. .|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~----~~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 94 GEPLHEEEGDEFVERIVSL----EELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred ccccccccccccccccCCH----HHHHhhCCEEEEEeCCCCCC
Confidence 432 11111111111010 0124689999999998 454
No 267
>PLN02507 glutathione reductase
Probab=97.97 E-value=5.9e-05 Score=80.91 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+..|..+++.|.+|+|+++ +.+.. .++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~---------------------------------------~~d- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR---------------------------------------GFD- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc---------------------------------------ccC-
Confidence 5799999999999999999999999999997 32100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cC--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GP--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+++...+.+.+++.||+++.+... .. +. ..+.+.++.++.+|.|++|+|.+|...
T Consensus 244 -----------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 244 -----------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 233344555667789999988543 11 12 234455667899999999999998764
No 268
>PRK06370 mercuric reductase; Validated
Probab=97.97 E-value=5.9e-05 Score=80.43 Aligned_cols=94 Identities=22% Similarity=0.280 Sum_probs=65.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..|++.|.+|+++++ +.+.. ..+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------------------------------------~~~- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP---------------------------------------RED- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc---------------------------------------ccC-
Confidence 5899999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEE---ccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKF---GTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~---~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +.. .+.+ +++.++.+|.||+|+|.+|+..
T Consensus 212 -----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 212 -----------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 122334455667789999987533 22 122 2333 2345799999999999998765
No 269
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.97 E-value=5.9e-05 Score=80.38 Aligned_cols=94 Identities=26% Similarity=0.356 Sum_probs=68.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||+|+.|+..|..|++.|.+|++|++ +.+.. ..+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------------~~d- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP---------------------------------------GED- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC---------------------------------------CCC-
Confidence 4799999999999999999999999999997 32111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +.. .+.+.+++++.+|.|++|+|..|+..
T Consensus 218 -----------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 218 -----------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred -----------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 123334555677789999987532 22 222 34455677899999999999998865
No 270
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.95 E-value=5.4e-05 Score=78.26 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVV 135 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~ 135 (556)
||+|||||.+|+.+|..|++.|++|+|||+ +..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 799999999999999999999999999997 443
No 271
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=7e-05 Score=79.90 Aligned_cols=94 Identities=28% Similarity=0.387 Sum_probs=66.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+.+|..+++.|.+|+|+|+ +.+. | ..+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------~------------------------------~~d- 212 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------P------------------------------NED- 212 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------C------------------------------ccC-
Confidence 4899999999999999999999999999997 3211 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEc--cc--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFG--TD--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~--~~--~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .. +.. .+.+. ++ .++.+|.||+|+|.+|+..
T Consensus 213 -----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 213 -----------AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 223334455677789999988643 22 222 23332 34 4799999999999998764
No 272
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.94 E-value=8.2e-05 Score=79.37 Aligned_cols=94 Identities=20% Similarity=0.320 Sum_probs=66.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||+|+.|+.+|..|+++|.+|++||+ +.+. | .++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~------------------------------~~d- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL---------P------------------------------REE- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC---------C------------------------------ccC-
Confidence 5899999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEc---cceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFG---TDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~---~~~~~~~d~lViAtG~~p~~p 246 (556)
+++...+.+.+++.||+++.+... .. +.. .+.+. +++++.+|.||+|+|..|...
T Consensus 207 -----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 207 -----------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 122334455666789999988632 22 222 23332 236799999999999998765
No 273
>PRK14694 putative mercuric reductase; Provisional
Probab=97.93 E-value=9.7e-05 Score=78.85 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=65.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||+|+.|+..|..|+++|.+|++++++.+- | ..+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l---------~------------------------------~~~-- 217 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL---------S------------------------------QED-- 217 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC---------C------------------------------CCC--
Confidence 58999999999999999999999999999863210 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCE--EEEccceEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQK--VKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~--v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +... +.+++ .++.+|.||+|+|..|+..
T Consensus 218 ----------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 218 ----------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCcC
Confidence 223344556677789999988533 22 2222 33333 4799999999999998764
No 274
>PLN02576 protoporphyrinogen oxidase
Probab=97.92 E-value=1.3e-05 Score=86.37 Aligned_cols=41 Identities=37% Similarity=0.614 Sum_probs=38.1
Q ss_pred CccEEEECCChHHHHHHHHHHHc-CCeEEEecC-CcCCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk-~~~GG~~~~ 141 (556)
++||+|||||.+||+||..|.+. |++|+|+|+ +.+||.+..
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 46999999999999999999999 999999999 899998764
No 275
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.91 E-value=0.00029 Score=75.87 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.5
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
..++||||||+|.||++||++++ +.+|+||||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 45689999999999999999997 579999999543
No 276
>PRK07236 hypothetical protein; Provisional
Probab=97.91 E-value=7.2e-05 Score=77.81 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=73.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC------CCHHHHHHHHHH----------------------
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG------FDPEIGKLAQRV---------------------- 319 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~------~d~~~~~~~~~~---------------------- 319 (556)
.+.+|+|||||+.|+.+|..|++.|.+|+++++.+..++. +.+...+.+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999988754321 233333333221
Q ss_pred ---------------------HhC-CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 320 ---------------------LIN-PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 320 ---------------------l~~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
|.+ -.+++++.++.+++++.+++ .+++++.+| +++.+|.||.|-|....+
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~--~v~v~~~~g------~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD--RVTARFADG------RRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC--eEEEEECCC------CEEEeCEEEECCCCCchH
Confidence 111 01356888999999987533 367888876 689999999999976554
No 277
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.90 E-value=0.00026 Score=77.59 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=30.2
Q ss_pred EEEECCChHHHHHHHHHHHcCCeEEEecCCc-CC
Q 008714 104 LIIIGAGVGGHGAALHAVEKGLKTAIIEGDV-VG 136 (556)
Q Consensus 104 VvIIGgG~aGl~aA~~l~~~g~~V~viEk~~-~G 136 (556)
|||||+|.||++||+.+++.|.+|+||||.. ++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6999999999999999999999999999943 54
No 278
>PLN02268 probable polyamine oxidase
Probab=97.89 E-value=1.2e-05 Score=85.10 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=36.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
+|+|||||.+||+||..|.+.|++|+|+|+ +.+||++..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 799999999999999999999999999999 999998763
No 279
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.89 E-value=8.6e-05 Score=79.72 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=67.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||||+.|+..|..|+++|.+|+|++++.+.. .++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~---------------------------------------~~d-- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR---------------------------------------GFD-- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc---------------------------------------cCC--
Confidence 479999999999999999999999999998632100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE--Ee--c-CCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT--IL--G-PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--~~--~-~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+... .. + ...+.+.+++++.+|.|++|+|..|+..
T Consensus 222 ----------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 222 ----------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 223344555677789999988642 11 1 1234555677899999999999998754
No 280
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.89 E-value=5.1e-05 Score=85.82 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=69.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||..|+.+|..|++.|.+|+|||+ +.+... .++
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~--------------------------------------~ld- 181 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK--------------------------------------QLD- 181 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh--------------------------------------hcC-
Confidence 4799999999999999999999999999987 221000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE--Eec---CCEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT--ILG---PQKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--~~~---~~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+.....+.+.+++.||+++.+... ... ...|.+.++.++.+|.||+|+|.+|+..
T Consensus 182 -----------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 182 -----------QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred -----------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 223334455677789999988643 221 2346667788999999999999998753
No 281
>PRK07538 hypothetical protein; Provisional
Probab=97.89 E-value=8.8e-05 Score=77.90 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
||+|||||++|+++|..|++.|++|+|||+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 899999999999999999999999999999
No 282
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.89 E-value=9e-05 Score=79.22 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=65.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||+|+.|+.+|..|++.|.+|+|||+ +.+.. ..+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------------~~d- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA---------------------------------------AAD- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC---------------------------------------cCC-
Confidence 5899999999999999999999999999998 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCE--EEEcc--c--eEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQK--VKFGT--D--NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~--v~~~~--~--~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +... +.+.+ + .++.+|.|++|+|..|...
T Consensus 224 -----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 224 -----------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred -----------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 122333444566689999988533 22 2222 33322 2 4699999999999998865
No 283
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.89 E-value=2.9e-05 Score=81.54 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVV 135 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~ 135 (556)
+|+|||||++||++|..|++.| .+|+|+|| +.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 6999999999999999999998 59999999 444
No 284
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.88 E-value=5.9e-05 Score=86.32 Aligned_cols=93 Identities=24% Similarity=0.183 Sum_probs=70.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+||++++.+.+. |. ++.++.+...+.+++ .||+++.+..+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~-~Gv~f~~n~~vG--- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKL-LGGRFVKNFVVG--- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHh-hcCeEEEeEEec---
Confidence 46999999999999999999999999999999887542 32 456666666667776 899999886431
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC-CCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 377 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 377 (556)
..+++.+. ....+|.|++|+|. .|..
T Consensus 381 -------~dit~~~l------~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 381 -------KTATLEDL------KAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred -------cEEeHHHh------ccccCCEEEEeCCCCCCCc
Confidence 12444443 34579999999998 4543
No 285
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=0.00014 Score=77.65 Aligned_cols=94 Identities=23% Similarity=0.386 Sum_probs=65.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+..|..+++.|.+|+|||+ +.+. | .++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il---------~------------------------------~~d- 214 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC---------P------------------------------GTD- 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC---------C------------------------------CCC-
Confidence 5799999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCE--EEEc-----cceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQK--VKFG-----TDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~--v~~~-----~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +... +.+. +++++.+|.|++|+|..|+..
T Consensus 215 -----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 215 -----------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred -----------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 123334455667789999988543 22 1122 2221 235799999999999998754
No 286
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.88 E-value=0.0002 Score=69.64 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=32.2
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDV 134 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~ 134 (556)
+..||+|||+|.-|+++|.+|++.|.+++++|+..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 45799999999999999999999999999999833
No 287
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=1.6e-05 Score=76.72 Aligned_cols=42 Identities=31% Similarity=0.560 Sum_probs=38.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNR 142 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~ 142 (556)
++|++|||+|.+|+..|..|+++|.+|+|||| +.+||.|-..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 37999999999999999999999999999999 9999998643
No 288
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.87 E-value=1.3e-05 Score=86.12 Aligned_cols=40 Identities=28% Similarity=0.524 Sum_probs=37.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
.||+|||||.+||+||..|++.|++|+|+|+ +.+||.+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccce
Confidence 5899999999999999999999999999999 789998763
No 289
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.87 E-value=1.3e-05 Score=86.08 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
..+.+.+.+.+++ .|++++.++.|++|..+ +++...|.+.+| +++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~-~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g------~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEK-HGGQIRYRARVTKIILE-NGKAVGVKLADG------EKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHH-CCCEEEeCCeeeEEEec-CCcEEEEEeCCC------CEEEcCEEEECCChH
Confidence 4577778888877 89999999999999875 456667777666 578999999998854
No 290
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.85 E-value=1.4e-05 Score=85.21 Aligned_cols=40 Identities=30% Similarity=0.509 Sum_probs=37.5
Q ss_pred ccEEEECCChHHHHHHHHHHHc----CCeEEEecC-CcCCccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK----GLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~----g~~V~viEk-~~~GG~~~~ 141 (556)
.||+|||||.+||+||..|.+. |++|+|+|+ +.+||.|..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 6899999999999999999999 999999999 899998864
No 291
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.85 E-value=0.00011 Score=78.33 Aligned_cols=94 Identities=21% Similarity=0.358 Sum_probs=66.6
Q ss_pred ccEEEECCChHHHHHHHHHHHc---CCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK---GLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAG 177 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~---g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 177 (556)
.+|+|||||+.|+..|..+..+ |.+|+|||+ +.+.. .
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~---------------------------------------~ 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR---------------------------------------G 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc---------------------------------------c
Confidence 5799999999999999766654 999999997 32110 0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--c-C--CEEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 178 YDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--G-P--QKVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~-~--~~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
++ ..+...+.+.+++.||+++.+... .+ + . ..+.+.++.++.+|.+|+|+|..|+..
T Consensus 229 ~d------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 229 FD------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred cC------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 11 233445556677789999988643 12 1 1 245555667899999999999998754
No 292
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.84 E-value=1.5e-05 Score=84.75 Aligned_cols=39 Identities=33% Similarity=0.584 Sum_probs=36.1
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCCccccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~GG~~~~ 141 (556)
+|+|||||.|||+||..|++.| ++|+|+|+ +.+||.+..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 6999999999999999999987 89999999 899998763
No 293
>PRK07846 mycothione reductase; Reviewed
Probab=97.84 E-value=0.00011 Score=77.83 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=64.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+.+|..|+++|.+|++|++ +.+. | .++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll---------~------------------------------~~d- 206 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL---------R------------------------------HLD- 206 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc---------c------------------------------ccC-
Confidence 5899999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p~ 247 (556)
.++...+.+.+ +.+++++.+... .. +.. .+.+.++.++.+|.||+|+|.+|+...
T Consensus 207 -----------~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 207 -----------DDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred -----------HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence 11112222222 357888877533 22 222 345556778999999999999987653
No 294
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.84 E-value=6.9e-05 Score=77.28 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=69.8
Q ss_pred eEEEEcCchhHHHHHHHHHhC---CCeEEEEEeCCCCC-----CC-----CC-HHHHHHHHHHHhCCCceEEEcCceEEE
Q 008714 271 WIAIVGSGYIGLEFSDVYTAL---GSEVTFIEALDQLM-----PG-----FD-PEIGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~---g~~Vtli~~~~~ll-----~~-----~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
+|+|||||+.|+.+|..+.+. +.+|+++++.+.+. |. .+ .++.....+.+++ .||+++.+ .+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~gv~~~~~-~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQ-AGARFVIA-EATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHh-cCCEEEEE-EEEE
Confidence 489999999999999998643 58999999887532 11 11 1222334455555 79999875 7888
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCC
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG 379 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~ 379 (556)
|+.+. + .|.+.+| +++.+|.+|+|+|..|+...
T Consensus 79 id~~~--~--~V~~~~g------~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 79 IDPDR--R--KVLLANR------PPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred Eeccc--C--EEEECCC------CcccccEEEEccCCCCCCCC
Confidence 87642 2 4666665 57999999999999987653
No 295
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.84 E-value=0.0001 Score=75.28 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=75.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCCC--C--------C-CHHHHHHHHHHHhCCCceEEEcCceEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLMP--G--------F-DPEIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll~--~--------~-d~~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
.+++||||||+-|+..+..|.+.- .+||++++.+..+- . + +.++...+.+.+.+..+|+++.+ .++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 478999999999999999999874 89999999886431 1 1 23344556677765345888776 578
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGL 380 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l 380 (556)
+|+.+ ++ +|.+.++ .++++|.+|+++|..++....
T Consensus 82 ~ID~~--~k--~V~~~~~------~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRD--AK--KVTLADL------GEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEccc--CC--EEEeCCC------ccccccEEEEecCCcCCcCCC
Confidence 88764 33 4666653 689999999999999998744
No 296
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.83 E-value=2.1e-05 Score=74.11 Aligned_cols=39 Identities=33% Similarity=0.506 Sum_probs=36.1
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
.+|+|||+|++|++||..|++.|.+|+|+|| .-+||+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence 4799999999999999999999999999999 67888766
No 297
>PRK07233 hypothetical protein; Provisional
Probab=97.83 E-value=1.6e-05 Score=83.93 Aligned_cols=38 Identities=29% Similarity=0.636 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
+|+|||||.+||+||..|++.|++|+|+|+ +.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 589999999999999999999999999999 89999865
No 298
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.83 E-value=8.4e-05 Score=84.22 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=71.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhC----CCeEEEEEeCCCCC------CC-C----CHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL----GSEVTFIEALDQLM------PG-F----DPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~----g~~Vtli~~~~~ll------~~-~----d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
++|+|||+|+.|+.+|..|.+. +.+||++.+.+++. +. + ..++.....+.+++ .||+++.+..+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~-~gI~~~~g~~V 82 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEK-HGIKVLVGERA 82 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHh-CCCEEEcCCEE
Confidence 5899999999999999999764 37899999887642 11 1 11222222344555 79999999999
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.+|+.. . ..|.+.+| .++.+|.+|+|||..|...
T Consensus 83 ~~Id~~--~--~~V~~~~G------~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINRQ--E--KVIHSSAG------RTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeCC--C--cEEEECCC------cEEECCEEEECCCCCcCCC
Confidence 888763 2 23555555 5799999999999998754
No 299
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.82 E-value=0.00013 Score=78.09 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=66.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||||+.|+.+|..|+++|.+|+|++++.+. +.++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l---------------------------------------~~~d-- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---------------------------------------RGFD-- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc---------------------------------------cccC--
Confidence 47999999999999999999999999999863210 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee---cC-CEEEEccc---eEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---GP-QKVKFGTD---NIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~---~~-~~v~~~~~---~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +. ..+.+.++ .++.+|.||+|+|..|+..
T Consensus 220 ----------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 220 ----------QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 223344556677789999988632 11 11 23444333 4799999999999998754
No 300
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.81 E-value=5.3e-05 Score=80.28 Aligned_cols=92 Identities=26% Similarity=0.359 Sum_probs=68.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-------CC--CCCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-------MP--GFDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-------l~--~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+ +| .+++++.....+.+++ .||+++.+..+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~--- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKK-LGVTFRMNFLVG--- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHh-CCcEEEeCCccC---
Confidence 3579999999999999999999999999999987654 12 2566676666667776 899999886431
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC-CCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 377 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 377 (556)
+ .+.+.+. ...+|.||+|+|. .|..
T Consensus 208 -----~--~v~~~~~-------~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 208 -----K--TATLEEL-------FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -----C--cCCHHHH-------HhhCCEEEEeCCCCCCCc
Confidence 1 1333222 3468999999997 5653
No 301
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.81 E-value=0.00036 Score=73.72 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecC-CCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAK-DGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~-~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
.+.+.+.+.+++ .|+++++++.++++..++ ++..+.+...++ ..++.++.||+|+|-
T Consensus 124 ~l~~~L~~~a~~-~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~-----~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 124 ALTNALYSSAER-LGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG-----THRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHH-cCCEEEeCCEEEEEEecCCCCeEEEEEEcCC-----cEEEEcCEEEEcCCC
Confidence 355556666666 899999999999987653 344444444322 157889999999993
No 302
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.81 E-value=0.00029 Score=74.18 Aligned_cols=41 Identities=39% Similarity=0.699 Sum_probs=35.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC-Ccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV-GGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~-GG~~~ 140 (556)
..+||+|||||..|+.+|..++.+|++|+|+|+..+ .|+..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 569999999999999999999999999999999444 45543
No 303
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.79 E-value=6.1e-05 Score=80.15 Aligned_cols=92 Identities=25% Similarity=0.305 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. |. .+.++.....+.+++ .||+++.++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLK-LGVEIRTNTEVGR- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHH-cCCEEEeCCEECC-
Confidence 456899999999999999999999999999999887652 22 356677777777776 8999998875411
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC-CC
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA-PF 376 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~-p~ 376 (556)
.+.+.+ ..+.+|.||+|||.. |.
T Consensus 216 ---------~v~~~~-------~~~~~d~vvlAtGa~~~~ 239 (457)
T PRK11749 216 ---------DITLDE-------LRAGYDAVFIGTGAGLPR 239 (457)
T ss_pred ---------ccCHHH-------HHhhCCEEEEccCCCCCC
Confidence 122222 236799999999985 44
No 304
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.78 E-value=7.6e-05 Score=79.42 Aligned_cols=92 Identities=20% Similarity=0.336 Sum_probs=69.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|++|+..|..|++.|.+|+++++.+.+. |. ++.++.....+.+++ .||+++.++.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~v~~-- 216 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTA-MGIEFHLNCEVGR-- 216 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHH-CCCEEECCCEeCC--
Confidence 46899999999999999999999999999999887542 22 466666666667776 8999999875521
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
.+.+.+ ....+|.||+|+|..+..
T Consensus 217 --------~~~~~~-------~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 217 --------DISLDD-------LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred --------ccCHHH-------HHhcCCEEEEEeCCCCCC
Confidence 011111 234699999999997753
No 305
>PRK10262 thioredoxin reductase; Provisional
Probab=97.78 E-value=0.00035 Score=70.64 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC---CC--------CCC----C-CHHHHHHHHHHHhCCCceEEEcC
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD---QL--------MPG----F-DPEIGKLAQRVLINPRKIDYHTG 331 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~---~l--------l~~----~-d~~~~~~~~~~l~~~~gV~~~~~ 331 (556)
..++|+|||+|+.|+..|..+.+.|.++++++..+ .+ +|. + .+++.+.+.+...+ .++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATK-FETEIIFD 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHH-CCCEEEee
Confidence 45789999999999999999999999999886432 11 122 1 12345555666554 66776665
Q ss_pred ceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 332 VFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 332 ~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.+..|+.. +....++..+ .++.+|.||+|+|..|+..
T Consensus 84 -~v~~v~~~--~~~~~v~~~~-------~~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 84 -HINKVDLQ--NRPFRLTGDS-------GEYTCDALIIATGASARYL 120 (321)
T ss_pred -EEEEEEec--CCeEEEEecC-------CEEEECEEEECCCCCCCCC
Confidence 45666653 2223333211 3689999999999998653
No 306
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.77 E-value=2e-05 Score=85.01 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
..+.+.+.+.+++ .|+++++++.|++|..+ +++.+.|++.+| +++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~-~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g------~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAED-LGGELRLNAEVIRIETE-GGRATAVHLADG------ERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHH-CCCEEEECCeEEEEEee-CCEEEEEEECCC------CEEECCEEEECCcHH
Confidence 4577778888876 89999999999999865 445566777666 578999999988753
No 307
>PLN02568 polyamine oxidase
Probab=97.76 E-value=3e-05 Score=83.54 Aligned_cols=41 Identities=32% Similarity=0.520 Sum_probs=37.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC-----CeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG-----LKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g-----~~V~viEk-~~~GG~~~ 140 (556)
+.+||+|||||++||+||..|.+.| ++|+|+|+ +.+||.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 3479999999999999999999887 89999999 88999876
No 308
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.76 E-value=0.00026 Score=75.04 Aligned_cols=93 Identities=25% Similarity=0.330 Sum_probs=65.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCC-cCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD-VVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~-~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||+|+.|+..|..|++.|.+|+|||+. .+. | .++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~------------------------------~~~- 198 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------P------------------------------RED- 198 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------C------------------------------CcC-
Confidence 47999999999999999999999999999983 210 1 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCEE--EEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQKV--KFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~v--~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
..+...+.+.+++.||+++.+... .+ +...+ ..++ .++.+|.|++|+|..|+..
T Consensus 199 -----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~-g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 199 -----------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEH-AQLAVDALLIASGRQPATA 257 (441)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcC-CeEEeCEEEEeecCCcCCC
Confidence 122334555677789999987543 22 22233 3333 4689999999999998754
No 309
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.76 E-value=3.1e-05 Score=83.31 Aligned_cols=38 Identities=39% Similarity=0.671 Sum_probs=34.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
++.++||+|||||..|+++|+.|+++|++|+||||..+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 45569999999999999999999999999999999544
No 310
>PTZ00058 glutathione reductase; Provisional
Probab=97.74 E-value=0.00025 Score=76.70 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=66.0
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
..+|+|||||+.|+..|..++++|.+|+|+|+ +.+. | .++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il---------~------------------------------~~d 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL---------R------------------------------KFD 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc---------c------------------------------cCC
Confidence 35799999999999999999999999999998 3211 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE-e--c-CCE--EEE-ccceEEEeCeEEEeCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI-L--G-PQK--VKF-GTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~--~-~~~--v~~-~~~~~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+.... + + ... +.. ++++++.+|.|++|+|..|+..
T Consensus 278 ------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 278 ------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred ------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 2233344556677899999886431 1 1 112 222 2335799999999999988754
No 311
>PRK06834 hypothetical protein; Provisional
Probab=97.74 E-value=0.00039 Score=74.41 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=73.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---CC---CC----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---PG---FD---------------------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---~~---~d---------------------------------- 309 (556)
..|+|||+|++|+-+|..|++.|.+|+++++.+... ++ +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999999765311 00 11
Q ss_pred ----------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 310 ----------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 310 ----------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
..+.+.+.+.+++ .||+++.++.+++++.+++ .+.+++.++ .++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~v~~~~~--~v~v~~~~g------~~i~a~~vVgADG~ 154 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGE-LGVPIYRGREVTGFAQDDT--GVDVELSDG------RTLRAQYLVGCDGG 154 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcCC--eEEEEECCC------CEEEeCEEEEecCC
Confidence 1122334444554 6899999999999987543 356666554 47999999999999
Q ss_pred CCCCC
Q 008714 374 APFTN 378 (556)
Q Consensus 374 ~p~~~ 378 (556)
.....
T Consensus 155 ~S~vR 159 (488)
T PRK06834 155 RSLVR 159 (488)
T ss_pred CCCcH
Confidence 87653
No 312
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.74 E-value=0.00022 Score=75.74 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=62.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||||+.|+..|..|++.|.+|++|++ +.+.. .++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~---------------------------------------~~d- 209 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR---------------------------------------HLD- 209 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc---------------------------------------ccC-
Confidence 5899999999999999999999999999997 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+++...+.+.+ +.+++++.+... .. +.. .+.+.+++++.+|.|++|+|.+|+..
T Consensus 210 -----------~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 210 -----------EDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred -----------HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 11112222222 357888876532 11 122 34445567899999999999998754
No 313
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.73 E-value=0.00021 Score=76.82 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=83.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-------------------------------CC----------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-------------------------------GF---------- 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-------------------------------~~---------- 308 (556)
|+|+|||+|++|+-.+..|.+.|.+++++++.+.+-. .|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 7999999999999999999999999999998875421 01
Q ss_pred -CHHHHHHHHHHHhCCCce--EEEcCceEEEEEecCCC---CeEEEEEecCCCCCCCceEecCEEEEeeCC--CCCCCCC
Q 008714 309 -DPEIGKLAQRVLINPRKI--DYHTGVFATKITPAKDG---KPVTIELIDAKTKEPKDTLEVDAALIATGR--APFTNGL 380 (556)
Q Consensus 309 -d~~~~~~~~~~l~~~~gV--~~~~~~~v~~i~~~~~g---~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~~~l 380 (556)
..++.++++.+.+. .++ .+.+++.|++++..++. ....|+..++ ++.++..+|.|++|+|. .|+...-
T Consensus 82 ~~~~v~~Yl~~Ya~~-f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~---g~~~~~~fD~VvvatG~~~~P~~P~~ 157 (531)
T PF00743_consen 82 SHSEVLEYLESYAEH-FGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND---GKEETEEFDAVVVATGHFSKPNIPEP 157 (531)
T ss_dssp BHHHHHHHHHHHHHH-TTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT---TEEEEEEECEEEEEE-SSSCESB---
T ss_pred CHHHHHHHHHHHHhh-hCCcceEEEccEEeEeeeccccCCCceEEEEeecC---CeEEEEEeCeEEEcCCCcCCCCCChh
Confidence 14566777777665 554 57899999999876442 2355655432 22345679999999997 4554320
Q ss_pred CCcccccccCCCceeeCCCCccccCCCCcCCCEEEeccc
Q 008714 381 GLENINVVTQRGFVPVDERMRVIDANGNLVPHLYCIGDA 419 (556)
Q Consensus 381 ~l~~~~~~~~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~ 419 (556)
.-.|++.-.|.+.=-...+. .+.-..+.|-++|-.
T Consensus 158 --~~~G~e~F~G~i~HS~~yr~--~~~f~gKrVlVVG~g 192 (531)
T PF00743_consen 158 --SFPGLEKFKGEIIHSKDYRD--PEPFKGKRVLVVGGG 192 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--T--GGGGTTSEEEEESSS
T ss_pred --hhhhhhcCCeeEEccccCcC--hhhcCCCEEEEEeCC
Confidence 01223332354422222221 000123678888864
No 314
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.73 E-value=0.00014 Score=82.51 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=65.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-------CCC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-------MPG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-------l~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+ .|. ++.+......+.+++ .||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~-~GVe~~~gt~V-di~ 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKA-HGVKFEFGCSP-DLT 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHH-cCCEEEeCcee-EEE
Confidence 4589999999999999999999999999999987654 232 234444444455665 79999998765 221
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+.+. ....+|.||+|||..+.
T Consensus 616 -----------le~L------~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 -----------VEQL------KNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhhh------eeccCCEEEECcCCCCC
Confidence 1111 34568999999999754
No 315
>PRK14727 putative mercuric reductase; Provisional
Probab=97.73 E-value=0.00028 Score=75.47 Aligned_cols=93 Identities=18% Similarity=0.286 Sum_probs=65.7
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+|+|||+|+.|+..|..+++.|.+|+||+++.+ +| .++
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~---------l~------------------------------~~d-- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL---------LF------------------------------RED-- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------CC------------------------------cch--
Confidence 5799999999999999999999999999986321 00 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC--EEEEccceEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ--KVKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~--~v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+... .. +.. .+...+ .++.+|.+|+|+|..|+..
T Consensus 228 ----------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 228 ----------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH 286 (479)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence 223344556677789999987543 11 222 233333 4689999999999998754
No 316
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.73 E-value=0.0003 Score=69.96 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=72.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC---------------------------------------C----
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP---------------------------------------G---- 307 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~---------------------------------------~---- 307 (556)
.|+|||+|+.|+-+|..|++.|.+|+++++.+..-. .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998854210 0
Q ss_pred ------C-CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 308 ------F-DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 308 ------~-d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+ ..++.+.+.+.+.+ .|++++.++.++++..++++ +.+.+.++ ..++.+|.||.|.|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~-~gv~~~~~~~v~~~~~~~~~--~~~~~~~~-----~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQE-AGAELRLGTTVLDVEIHDDR--VVVIVRGG-----EGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHH-cCCEEEeCcEEeeEEEeCCE--EEEEEcCc-----cEEEEeCEEEECCCcchH
Confidence 0 12344556666665 79999999999998765332 44544432 257999999999998643
No 317
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.00029 Score=75.08 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=65.0
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+++|||+|+.|+..|..|+++|.+|+++|+ +.+.. .++
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------------~~d- 209 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------------LED- 209 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------------chh-
Confidence 5899999999999999999999999999998 32111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCC-EEEE----ccceEEEeCeEEEeCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQ-KVKF----GTDNIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~-~v~~----~~~~~~~~d~lViAtG~~p~~p~ 247 (556)
.++...+.+.+++. |+++.+... .. +.. .+.+ .++.++.+|.+|+|+|..|+...
T Consensus 210 -----------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 210 -----------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred -----------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 22334445566667 888877533 11 121 3442 23357999999999999988663
No 318
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.73 E-value=3.6e-05 Score=83.73 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCC----C---C-----CcHHHHHHHHHHHHHHHhC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANG----K---M-----MLAHAASAQGISVVEQVTG 442 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~----~---~-----~~~~~A~~qg~~aa~~i~g 442 (556)
..|.+.+|+++|+.|.+++-+||+||+|.+++ . + .....|+..|++|+++++.
T Consensus 484 T~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 484 TLGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred EccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 56779999999999988899999999999974 1 1 1245688899999999863
No 319
>PRK13748 putative mercuric reductase; Provisional
Probab=97.72 E-value=0.00027 Score=77.42 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=65.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+++|||||+.|+..|..|+++|.+|+||+++.+ +| .++
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---------l~------------------------------~~d-- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL---------FF------------------------------RED-- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc---------cc------------------------------ccC--
Confidence 5799999999999999999999999999987321 00 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee--cCCE--EEEccceEEEeCeEEEeCCCCCCCC
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL--GPQK--VKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~--~~~~--v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
.++...+.+.+++.||+++.+... .+ +... +.+.+ .++.+|.||+|+|..|+..
T Consensus 310 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 310 ----------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLLVATGRAPNTR 368 (561)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEEEccCCCcCCC
Confidence 223344555667789999987543 22 1222 33333 4699999999999998864
No 320
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.71 E-value=3.7e-05 Score=82.89 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=45.1
Q ss_pred CCCceeeCCCCccccCCCCcCCCEEEecccCCC-----C----CcHHHHHHHHHHHHHHHhCC
Q 008714 390 QRGFVPVDERMRVIDANGNLVPHLYCIGDANGK-----M----MLAHAASAQGISVVEQVTGR 443 (556)
Q Consensus 390 ~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~-----~----~~~~~A~~qg~~aa~~i~g~ 443 (556)
..|.+.+|++.|+.|.++..+||+||+|.+++. + .....|+-.|++|+++++++
T Consensus 449 T~GGl~in~~~qVl~~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 449 TKGGLRTDTAARVLDTDGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred eCCCceECCCceEECCCCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 577799999999999888899999999999643 1 12566889999999999865
No 321
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.70 E-value=4.4e-05 Score=82.14 Aligned_cols=37 Identities=38% Similarity=0.652 Sum_probs=33.7
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVV 135 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~ 135 (556)
...+||+|||||..|+++|+.|++.|++|+||||..+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3469999999999999999999999999999999544
No 322
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.70 E-value=0.001 Score=70.17 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=88.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCe-EEEEEeCCCCC----------------------CC--C------C--HHHHHHH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSE-VTFIEALDQLM----------------------PG--F------D--PEIGKLA 316 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~-Vtli~~~~~ll----------------------~~--~------d--~~~~~~~ 316 (556)
.+|+|||+|++|+-+|..|.+.|.. +.++++++.+- |. + . .++.+++
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHH
Confidence 5799999999999999999999988 99999886331 11 1 0 1256677
Q ss_pred HHHHhCCCc--eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC--CCCCCCCCCcccccccCCC
Q 008714 317 QRVLINPRK--IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR--APFTNGLGLENINVVTQRG 392 (556)
Q Consensus 317 ~~~l~~~~g--V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~--~p~~~~l~l~~~~~~~~~G 392 (556)
..++++ ++ ..+.+++.++.+..+++++..+|+..++. . .++.+|.||+|+|. .|+...+ .|++.-.|
T Consensus 89 ~~~~~~-y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~---~-~~~~a~~vV~ATG~~~~P~iP~~----~G~~~f~g 159 (443)
T COG2072 89 KDYLEK-YGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG---T-GELTADFVVVATGHLSEPYIPDF----AGLDEFKG 159 (443)
T ss_pred HHHHHH-cCceeEEEcccceEEEEecCCCCeEEEEEcCCC---e-eeEecCEEEEeecCCCCCCCCCC----CCccCCCc
Confidence 777765 54 34455666777777767777788887762 1 12779999999997 4444322 22333344
Q ss_pred ceeeCCCCccccCCCCcCCCEEEecccC
Q 008714 393 FVPVDERMRVIDANGNLVPHLYCIGDAN 420 (556)
Q Consensus 393 ~i~vd~~l~~~~~~~t~~~~Vya~GD~~ 420 (556)
.+.=-.+... ...-.-++|-+||--+
T Consensus 160 ~~~HS~~~~~--~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 160 RILHSADWPN--PEDLRGKRVLVIGAGA 185 (443)
T ss_pred eEEchhcCCC--ccccCCCeEEEECCCc
Confidence 3211111110 0003447899999654
No 323
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.70 E-value=0.00021 Score=72.93 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=75.5
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.-.|+++|+|..|+.+|..|...+.+|++|++.. .|+|.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~--------~~~~~--------------------------------- 251 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP--------WLLPR--------------------------------- 251 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCc--------cchhh---------------------------------
Confidence 3569999999999999999999999999998832 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe-----c--CCEEEEccceEEEeCeEEEeCCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL-----G--PQKVKFGTDNIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-----~--~~~v~~~~~~~~~~d~lViAtG~~p~~p~ 247 (556)
-+...+.+.+...+++.||+++.++.... + ...|.+.++.++.+|.||+.+|++|..+.
T Consensus 252 --------lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 252 --------LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred --------hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 01245666677788889999999986521 1 12466778899999999999999998764
No 324
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.70 E-value=3.6e-05 Score=81.84 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
..+.+.+.+.+++ .|+++++++.|++|...+++..+.+++.++..+ +..++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~-~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~-~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITS-RGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQ-RRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHh-cCCEEeCCCeeEEEEECCCCCEEEEEEecCCCC-ceeEEECCEEEEcCCH
Confidence 4466777777776 799999999999998655665666777655211 1126899999999864
No 325
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.69 E-value=0.00043 Score=70.56 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=68.4
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEE-eCCCCCC-------------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIE-ALDQLMP------------------------------------------- 306 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~-~~~~ll~------------------------------------------- 306 (556)
.|+|||||..|+|.|..+++.|.+|.++. ..+.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 48999999999999999999999999983 3332210
Q ss_pred ----------CCC-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 307 ----------GFD-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 307 ----------~~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
..| ..+.+.+.+.+++..+++++. ..|+++..+ ++++..|.+.+| .++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e-~~~v~GV~~~~g------~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVE-NGKVKGVVTKDG------EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEEC-TTEEEEEEETTS------EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEec-CCeEEEEEeCCC------CEEecCEEEEeccc
Confidence 011 134456667777657899975 578888775 577788888887 78999999999998
No 326
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=3.8e-05 Score=79.49 Aligned_cols=40 Identities=30% Similarity=0.538 Sum_probs=37.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNR 142 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~ 142 (556)
+|+|+|||.|||+||..|++.|++|+|+|+ +.+||-|..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeee
Confidence 699999999999999999999999999999 8999988743
No 327
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.69 E-value=0.00043 Score=75.41 Aligned_cols=97 Identities=23% Similarity=0.226 Sum_probs=70.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC------------CCC----CHHHHHHHHHHHhCCCceEEEcCce
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM------------PGF----DPEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll------------~~~----d~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
-.|+|||||+.|+..|..+++.|.+|+++++.. +. |.+ .+++.+.+.+.+++ .|++++ +..
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~-~gv~~~-~~~ 81 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQD-FGVKFL-QAE 81 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHH-cCCEEe-ccE
Confidence 369999999999999999999999999999753 21 111 13556666666665 789985 567
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+..+..+ +....+...+ .++.+|.||+|+|..|...
T Consensus 82 V~~i~~~--~~~~~V~~~~-------g~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 82 VLDVDFD--GDIKTIKTAR-------GDYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEEec--CCEEEEEecC-------CEEEEeEEEECCCCccCCC
Confidence 7777753 2333455433 2588999999999988754
No 328
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.68 E-value=3.7e-05 Score=82.02 Aligned_cols=40 Identities=20% Similarity=0.435 Sum_probs=36.0
Q ss_pred ccEEEECCChHHHHHHHHHHHc------CCeEEEecC-CcCCccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK------GLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~------g~~V~viEk-~~~GG~~~~ 141 (556)
.+|+|||||.+||+||..|.+. |.+|+|+|+ +++||.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 4799999999999999999986 379999999 899998764
No 329
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.66 E-value=0.00014 Score=77.07 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=64.3
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHh--CCCeEEEEEeCCCCC--------CCC--CHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTA--LGSEVTFIEALDQLM--------PGF--DPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtli~~~~~ll--------~~~--d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
..+++|+|||+|+.|+..|..|++ .|.+|+++++.+.+. |.. ...+...+.+.+.+ .+|+++.+..+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~-~~v~~~~nv~v 102 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATD-DRVSFFGNVTL 102 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHH-CCeEEEcCEEE
Confidence 346899999999999999999986 799999999988653 221 12233344555555 78998887544
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
- . .+.+.+. ...+|.||+|+|..+.
T Consensus 103 g---~-------dvtl~~L-------~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 103 G---R-------DVSLSEL-------RDLYHVVVLAYGAESD 127 (491)
T ss_pred C---c-------cccHHHH-------hhhCCEEEEecCCCCC
Confidence 1 1 1333332 3469999999998763
No 330
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=0.00029 Score=75.16 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=29.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+++|||||+.|+..|..+++.|.+|+|||+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~ 205 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM 205 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence 5899999999999999999999999999998
No 331
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.66 E-value=5.9e-05 Score=70.52 Aligned_cols=143 Identities=27% Similarity=0.393 Sum_probs=95.0
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---CCCCH-----------HHH--H--HHHHHHhCCCceEEEcCc
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---PGFDP-----------EIG--K--LAQRVLINPRKIDYHTGV 332 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---~~~d~-----------~~~--~--~~~~~l~~~~gV~~~~~~ 332 (556)
+|+|||||+.|+.+|..|++.+.+|+++++.+... ..+.. ... + .+.+.+.+ .+++++.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKN-RGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHH-HTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccccccccccccccccccccccccccccc-ceEEEeecc
Confidence 58999999999999999999999999997655210 00000 000 0 22222344 789998989
Q ss_pred eEEEEEecCCC---CeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCCC----------------------------
Q 008714 333 FATKITPAKDG---KPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGLG---------------------------- 381 (556)
Q Consensus 333 ~v~~i~~~~~g---~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l~---------------------------- 381 (556)
.+.+++..... ..+.+.... .++..++.+|.||+|+|..|+...+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVE---TGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVA 156 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEE---TTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEE
T ss_pred ccccccccccccccCcccceeec---cCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccc
Confidence 99999875321 011221111 11337899999999999876532111
Q ss_pred ------C-ccccccc-CCCceeeCCCCccccCCCCcCCCEEEecccCCCC
Q 008714 382 ------L-ENINVVT-QRGFVPVDERMRVIDANGNLVPHLYCIGDANGKM 423 (556)
Q Consensus 382 ------l-~~~~~~~-~~G~i~vd~~l~~~~~~~t~~~~Vya~GD~~~~~ 423 (556)
+ +..+++. ++|++.||+++| |+.|||||+|||++.+
T Consensus 157 VvG~~~l~~~~~~~~~~~g~i~vd~~~~------t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 157 VVGTEFLAEKLGVELDENGFIKVDENLQ------TSVPGIYAAGDCAGIY 200 (201)
T ss_dssp EESTTTSTHHTTSTBTTTSSBEEBTTSB------BSSTTEEE-GGGBEES
T ss_pred cccccccccccccccccccccccccccc------cccccccccccccccC
Confidence 0 3345555 789999999999 6899999999998653
No 332
>PRK07045 putative monooxygenase; Reviewed
Probab=97.65 E-value=0.00057 Score=71.12 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=74.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC--C---CC-----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP--G---FD----------------------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~--~---~d----------------------------------- 309 (556)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.+-+ . +.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999987764310 0 00
Q ss_pred --------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEE
Q 008714 310 --------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 310 --------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~ 369 (556)
.++.+.+.+.+.+..|++++++++++.++.++++..+.+++.+| +++.+|+||-
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g------~~~~~~~vIg 159 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG------ERVAPTVLVG 159 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC------CEEECCEEEE
Confidence 01222233333333579999999999998765654456777665 5799999999
Q ss_pred eeCCCCCC
Q 008714 370 ATGRAPFT 377 (556)
Q Consensus 370 a~G~~p~~ 377 (556)
|.|....+
T Consensus 160 ADG~~S~v 167 (388)
T PRK07045 160 ADGARSMI 167 (388)
T ss_pred CCCCChHH
Confidence 99987644
No 333
>PLN02676 polyamine oxidase
Probab=97.64 E-value=5.7e-05 Score=80.66 Aligned_cols=42 Identities=36% Similarity=0.544 Sum_probs=37.9
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCC-eEEEecC-CcCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGL-KTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~-~V~viEk-~~~GG~~~~ 141 (556)
..+||+|||||++||+||.+|++.|. +|+|+|+ +.+||.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 35799999999999999999999998 5999999 889998763
No 334
>PLN02529 lysine-specific histone demethylase 1
Probab=97.64 E-value=5.9e-05 Score=83.33 Aligned_cols=41 Identities=34% Similarity=0.591 Sum_probs=38.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..+||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 457999999999999999999999999999999 88888766
No 335
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.63 E-value=0.0005 Score=69.07 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=30.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+|||||.+|+++|..|.++|++|+|+|+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~ 33 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLES 33 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence 5899999999999999999999999999998
No 336
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.62 E-value=0.00053 Score=71.54 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=72.1
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC------------------CCCH--------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP------------------GFDP-------------------- 310 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~------------------~~d~-------------------- 310 (556)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. ++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 57899999999999999999999999999998764311 0000
Q ss_pred --------------------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEec
Q 008714 311 --------------------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEV 364 (556)
Q Consensus 311 --------------------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~ 364 (556)
++.+.+.+.+.+..+|+++.++.+++++.+++ .+.+.+.+| .++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~v~~~~g------~~~~a 155 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD--GVTVFDQQG------NRWTG 155 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC--ceEEEEcCC------CEEec
Confidence 01122233333323599999999999986433 356777665 57999
Q ss_pred CEEEEeeCCCCCC
Q 008714 365 DAALIATGRAPFT 377 (556)
Q Consensus 365 D~vi~a~G~~p~~ 377 (556)
|.||.|.|.....
T Consensus 156 d~vV~AdG~~S~~ 168 (396)
T PRK08163 156 DALIGCDGVKSVV 168 (396)
T ss_pred CEEEECCCcChHH
Confidence 9999999987654
No 337
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.61 E-value=0.00019 Score=76.68 Aligned_cols=89 Identities=29% Similarity=0.331 Sum_probs=67.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++++|||+|+.|++.|..|++.|.+|+++++.+++. |. +++++.....+.+++ .||+++.++.+.. +
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~-~Gv~~~~~~~v~~-~ 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSA-EGIDFVTNTEIGV-D 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHh-CCCEEECCCEeCC-c
Confidence 35799999999999999999999999999999887642 32 455666665666766 8999999876531 0
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
+.. +. ....+|.|++|+|..
T Consensus 220 ---------~~~-~~------~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 ---------ISA-DE------LKEQFDAVVLAGGAT 239 (485)
T ss_pred ---------cCH-HH------HHhhCCEEEEccCCC
Confidence 111 10 235699999999997
No 338
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.61 E-value=0.00068 Score=65.98 Aligned_cols=46 Identities=35% Similarity=0.643 Sum_probs=37.7
Q ss_pred CCCCCccEEEECCChHHHHHHHHHHHc----CCeEEEecCCc----------CCcccccc
Q 008714 97 PKSFDYDLIIIGAGVGGHGAALHAVEK----GLKTAIIEGDV----------VGGTCVNR 142 (556)
Q Consensus 97 ~~~~~~dVvIIGgG~aGl~aA~~l~~~----g~~V~viEk~~----------~GG~~~~~ 142 (556)
.-+.++||+|||||-.|.+.|.-|+++ |++|+|+|++. +||.|-..
T Consensus 82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF 141 (509)
T KOG2853|consen 82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF 141 (509)
T ss_pred ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence 345679999999999999999999876 79999999943 47777543
No 339
>PRK05868 hypothetical protein; Validated
Probab=97.60 E-value=0.00061 Score=70.45 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=70.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CCH-------------HH-------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FDP-------------EI------------------- 312 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d~-------------~~------------------- 312 (556)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+ ++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999877643110 000 00
Q ss_pred ----------------------HHHHHHHHhC--CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 313 ----------------------GKLAQRVLIN--PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 313 ----------------------~~~~~~~l~~--~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
...+.+.|.+ ..|++++++++++.++.+ +..+++++.+| .++++|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~--~~~v~v~~~dg------~~~~adlvI 153 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD--GDSVRVTFERA------AAREFDLVI 153 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec--CCeEEEEECCC------CeEEeCEEE
Confidence 0111222211 257889999999988764 33477888887 578999999
Q ss_pred EeeCCCCCC
Q 008714 369 IATGRAPFT 377 (556)
Q Consensus 369 ~a~G~~p~~ 377 (556)
-|-|....+
T Consensus 154 gADG~~S~v 162 (372)
T PRK05868 154 GADGLHSNV 162 (372)
T ss_pred ECCCCCchH
Confidence 999976655
No 340
>PLN02546 glutathione reductase
Probab=97.60 E-value=0.00041 Score=75.16 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=65.5
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDR 180 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (556)
.+|+|||||+.|+..|..|++.|.+|+||++ +.+.. .++
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~---------------------------------------~~d- 292 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR---------------------------------------GFD- 292 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc---------------------------------------ccC-
Confidence 5899999999999999999999999999997 32110 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEE-Ee---cCCE--EEEccceEEEeCeEEEeCCCCCCCC
Q 008714 181 QGVADHANNLATKIRNNLTNSMKALGVDILTGVGT-IL---GPQK--VKFGTDNIVTAKDIIIATGSVPFVP 246 (556)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~---~~~~--v~~~~~~~~~~d~lViAtG~~p~~p 246 (556)
+.+...+.+.+++.||+++.+... .+ +... +..+++....+|.||+|+|..|+..
T Consensus 293 -----------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 293 -----------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred -----------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 234445556677789999987643 11 1222 3334444445899999999998754
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.59 E-value=0.0004 Score=74.45 Aligned_cols=129 Identities=20% Similarity=0.300 Sum_probs=78.9
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHH
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQ 181 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (556)
.+|+|||+|.+|+++|..|+++|.+|+++|+..
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~----------------------------------------------- 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD----------------------------------------------- 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-----------------------------------------------
Confidence 479999999999999999999999999998621
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEecCCEEEEccceEEEeCeEEEeCCCCCCCCCCC--CCCCCeEecc
Q 008714 182 GVADHANNLATKIRNNLTNSMKALGVDILTGVGTILGPQKVKFGTDNIVTAKDIIIATGSVPFVPKGI--EVDGKTVITS 259 (556)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~~~~~~~~~~d~lViAtG~~p~~p~~~--~~~~~~v~t~ 259 (556)
......+...+++.||+++.+.... ....+|.||+++|..|..|... ...+..+++-
T Consensus 50 ----------~~~~~~~~~~l~~~gv~~~~~~~~~-----------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~ 108 (480)
T PRK01438 50 ----------DERHRALAAILEALGATVRLGPGPT-----------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPVWGE 108 (480)
T ss_pred ----------hhhhHHHHHHHHHcCCEEEECCCcc-----------ccCCCCEEEECCCcCCCCHHHHHHHHCCCeecch
Confidence 0000112234455799988764211 1246899999999998876321 2234445433
Q ss_pred ccc-ccCCC---CCCeEEEEcC-chh--HHHHHHHHHhCCCeEEEE
Q 008714 260 DHA-LKLEF---VPDWIAIVGS-GYI--GLEFSDVYTALGSEVTFI 298 (556)
Q Consensus 260 ~~~-~~~~~---~~~~v~VvG~-G~~--g~e~A~~l~~~g~~Vtli 298 (556)
-++ ..+.. ..+.|.|-|. |-+ .--++..|...|.++...
T Consensus 109 ~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~ 154 (480)
T PRK01438 109 VELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154 (480)
T ss_pred HHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence 222 22211 1235666663 322 333566777777666543
No 342
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.58 E-value=0.00062 Score=70.94 Aligned_cols=101 Identities=22% Similarity=0.247 Sum_probs=73.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC--------------CC-------------C--------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL--------------MP-------------G-------------- 307 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l--------------l~-------------~-------------- 307 (556)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.. .| .
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 357999999999999999999999999999986421 00 0
Q ss_pred ----------CC---------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE
Q 008714 308 ----------FD---------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362 (556)
Q Consensus 308 ----------~d---------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i 362 (556)
++ ..+.+.+.+.+++ .|++++.++.+++++.+++ .+.+++.+| .++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~~~--~v~v~~~~g------~~~ 156 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHA-AGVQLHCPARVVALEQDAD--RVRLRLDDG------RRL 156 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHh-CCCEEEcCCeEEEEEecCC--eEEEEECCC------CEE
Confidence 00 1122333444554 6899999999999886533 356777665 579
Q ss_pred ecCEEEEeeCCCCCCC
Q 008714 363 EVDAALIATGRAPFTN 378 (556)
Q Consensus 363 ~~D~vi~a~G~~p~~~ 378 (556)
.+|.||.|.|...+..
T Consensus 157 ~a~~vV~AdG~~S~vr 172 (392)
T PRK08773 157 EAALAIAADGAASTLR 172 (392)
T ss_pred EeCEEEEecCCCchHH
Confidence 9999999999988653
No 343
>PRK09126 hypothetical protein; Provisional
Probab=97.57 E-value=0.00094 Score=69.57 Aligned_cols=101 Identities=27% Similarity=0.351 Sum_probs=71.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---CC---------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---PG--------------------------------------- 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---~~--------------------------------------- 307 (556)
-+|+|||||+.|+-+|..|++.|.+|+++++.+..- +.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 369999999999999999999999999999875310 00
Q ss_pred ---------CCH---------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEe
Q 008714 308 ---------FDP---------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLE 363 (556)
Q Consensus 308 ---------~d~---------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~ 363 (556)
++. .+.+.+.+.+.+..|++++.++++++++.+++ .+.+++++| +++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~--~~~v~~~~g------~~~~ 155 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD--GAQVTLANG------RRLT 155 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC--eEEEEEcCC------CEEE
Confidence 000 01112222232336899999999999876533 356777665 5899
Q ss_pred cCEEEEeeCCCCCCC
Q 008714 364 VDAALIATGRAPFTN 378 (556)
Q Consensus 364 ~D~vi~a~G~~p~~~ 378 (556)
+|.||.|.|....+.
T Consensus 156 a~~vI~AdG~~S~vr 170 (392)
T PRK09126 156 ARLLVAADSRFSATR 170 (392)
T ss_pred eCEEEEeCCCCchhh
Confidence 999999999977653
No 344
>PRK12831 putative oxidoreductase; Provisional
Probab=97.56 E-value=0.00024 Score=75.59 Aligned_cols=95 Identities=25% Similarity=0.316 Sum_probs=66.7
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHH-HHHHHHHHHhCCCceEEEcCceEEE
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPE-IGKLAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~-~~~~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
..+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. |. ++.+ +.....+.+++ .||++++++.+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~-~gv~i~~~~~v~~ 216 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK-LGVKIETNVVVGK 216 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH-cCCEEEcCCEECC
Confidence 346899999999999999999999999999999866431 22 2222 55555566666 8999999875411
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC-CCCC
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 377 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 377 (556)
.+.+.+. ..++.+|.||+|+|. .|..
T Consensus 217 ----------~v~~~~~-----~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 ----------TVTIDEL-----LEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred ----------cCCHHHH-----HhccCCCEEEEeCCCCCCCC
Confidence 1222221 123569999999997 5643
No 345
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.54 E-value=0.0002 Score=70.72 Aligned_cols=35 Identities=34% Similarity=0.521 Sum_probs=32.5
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+..+||+|||+|.+|.+.|..|++.|.||.||||
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIER 76 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIER 76 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEec
Confidence 34468999999999999999999999999999998
No 346
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.53 E-value=0.0001 Score=76.68 Aligned_cols=37 Identities=32% Similarity=0.607 Sum_probs=33.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~G 136 (556)
.++||+|||||.+|+++|++|++.|.+|+++|+..++
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 4589999999999999999999999999999996553
No 347
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.52 E-value=0.0015 Score=68.61 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC----CC---CC--------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM----PG---FD-------------------------------- 309 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll----~~---~d-------------------------------- 309 (556)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..- +. +.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3579999999999999999999999999999775321 00 00
Q ss_pred -----------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 310 -----------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 310 -----------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
..+.+.+.+.+.+..+|++++++++++++.++++ +.+++.++ ++..++.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~---~~~~~i~adl 172 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIE---GKQQTLQSKL 172 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccC---CcceEEeeeE
Confidence 0111222232333237899999999998765333 55666542 1124699999
Q ss_pred EEEeeCCCCCC
Q 008714 367 ALIATGRAPFT 377 (556)
Q Consensus 367 vi~a~G~~p~~ 377 (556)
||.|.|.....
T Consensus 173 vIgADG~~S~v 183 (415)
T PRK07364 173 VVAADGARSPI 183 (415)
T ss_pred EEEeCCCCchh
Confidence 99999987655
No 348
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.52 E-value=0.00033 Score=74.74 Aligned_cols=89 Identities=29% Similarity=0.385 Sum_probs=65.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. |. ++.++.....+.+.+ .||+++.++.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~-- 218 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEA-EGIEFRTNVEVGK-- 218 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHh-CCcEEEeCCEECC--
Confidence 45799999999999999999999999999999887652 21 345555555566666 8999998875421
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
+ +...+ ....+|.|++|+|..
T Consensus 219 ---~-----~~~~~-------~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 219 ---D-----ITAEE-------LLAEYDAVFLGTGAY 239 (471)
T ss_pred ---c-----CCHHH-------HHhhCCEEEEecCCC
Confidence 0 11111 235799999999997
No 349
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.52 E-value=0.00088 Score=73.05 Aligned_cols=104 Identities=22% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----C-----------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----F----------------------------------- 308 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~----------------------------------- 308 (556)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.+. +
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999877532110 0
Q ss_pred ---------------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEE
Q 008714 309 ---------------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAA 367 (556)
Q Consensus 309 ---------------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~v 367 (556)
...+.+.+.+.+.+..++++++++++++++.++++ +.+++.+.+ ...++.+|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--v~v~~~~~~---g~~~i~ad~v 177 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG--VTLTVETPD---GPYTLEADWV 177 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE--EEEEEECCC---CcEEEEeCEE
Confidence 00122233444444247999999999999875443 445554321 1247899999
Q ss_pred EEeeCCCCCC
Q 008714 368 LIATGRAPFT 377 (556)
Q Consensus 368 i~a~G~~p~~ 377 (556)
|.|.|.....
T Consensus 178 VgADG~~S~v 187 (547)
T PRK08132 178 IACDGARSPL 187 (547)
T ss_pred EECCCCCcHH
Confidence 9999987765
No 350
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.52 E-value=0.00082 Score=68.57 Aligned_cols=103 Identities=28% Similarity=0.379 Sum_probs=70.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CC------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD------------------------------------ 309 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d------------------------------------ 309 (556)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+. +.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999987643210 00
Q ss_pred ----------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCce
Q 008714 310 ----------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361 (556)
Q Consensus 310 ----------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~ 361 (556)
.++.+.+.+.+++ .|++++.++++..++.+.++ +.+.+.++. .+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~gv~i~~~~~v~~~~~d~~~--~~~~~~~~~-~g~~~~ 158 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEE-RGVDIRFGTRVVSIEQDDDG--VTVVVRDGE-DGEEET 158 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHH-HTEEEEESEEEEEEEEETTE--EEEEEEETC-TCEEEE
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhh-hhhhheeeeecccccccccc--ccccccccc-CCceeE
Confidence 2344455555555 67999999999988876444 444444431 122247
Q ss_pred EecCEEEEeeCCCCCC
Q 008714 362 LEVDAALIATGRAPFT 377 (556)
Q Consensus 362 i~~D~vi~a~G~~p~~ 377 (556)
+++|+||-|-|....+
T Consensus 159 i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 159 IEADLVVGADGAHSKV 174 (356)
T ss_dssp EEESEEEE-SGTT-HH
T ss_pred EEEeeeecccCcccch
Confidence 9999999999987654
No 351
>PLN02661 Putative thiazole synthesis
Probab=97.51 E-value=0.0029 Score=63.60 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=95.5
Q ss_pred CCeEEEEcCchhHHHHHHHHHhC-CCeEEEEEeCCCCCC---------------------------CCCH----------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTAL-GSEVTFIEALDQLMP---------------------------GFDP---------- 310 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~-g~~Vtli~~~~~ll~---------------------------~~d~---------- 310 (556)
.-.|+|||+|..|+-.|..|++. |.+|+++++...+-. .|+.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35799999999999999999875 789999987653211 0111
Q ss_pred -HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe------cCCCC--CCCceEecCEEEEeeCCCCCCCCCC
Q 008714 311 -EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI------DAKTK--EPKDTLEVDAALIATGRAPFTNGLG 381 (556)
Q Consensus 311 -~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~------~g~~~--~~~~~i~~D~vi~a~G~~p~~~~l~ 381 (556)
++.+.+.+...+..||+++.++.+.++..+ +++...+.+. ++... .+...+.++.||+|||..+......
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence 111223332222368999999998888765 4544444431 22111 0114689999999999655322111
Q ss_pred Ccc---ccccc---CCCceeeC--CCCccccCCCCcCCCEEEecccC----CCCCc---HHHHHHHHHHHHHHHhC
Q 008714 382 LEN---INVVT---QRGFVPVD--ERMRVIDANGNLVPHLYCIGDAN----GKMML---AHAASAQGISVVEQVTG 442 (556)
Q Consensus 382 l~~---~~~~~---~~G~i~vd--~~l~~~~~~~t~~~~Vya~GD~~----~~~~~---~~~A~~qg~~aa~~i~g 442 (556)
... .+... ......++ +.+ +.+..+.-+||+|++|=.+ |.|+. -..-...|+.+|+.|+.
T Consensus 251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~-~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 251 VKRLKSIGMIDSVPGMKALDMNAAEDA-IVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred hhcccccCCccCCCCccccchhhHHHH-HHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 111 11100 00011111 111 1111124589999999764 33433 22344678888888764
No 352
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.51 E-value=0.00028 Score=78.22 Aligned_cols=91 Identities=23% Similarity=0.377 Sum_probs=68.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------C--CCCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. | .+++++.+...+.+++ .||+++++..+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~-~Gv~~~~~~~v~~-- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTA-MGIDFHLNCEIGR-- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHH-CCeEEEcCCccCC--
Confidence 46899999999999999999999999999999888642 2 2566766666666766 8999999875421
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
.+.+.+ ....+|.|++|+|..+.
T Consensus 386 --------~~~~~~-------l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --------DITFSD-------LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --------cCCHHH-------HHhcCCEEEEeCCCCCC
Confidence 122221 23468999999998653
No 353
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.49 E-value=0.00038 Score=78.73 Aligned_cols=93 Identities=27% Similarity=0.404 Sum_probs=67.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-------CCC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-------MPG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-------l~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+ .|. ++.++.+...+.+++ .||+++.+..+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~-~gv~~~~~~~v~--- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKK-LGVKFETDVIVG--- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHH-CCCEEECCCEEC---
Confidence 3579999999999999999999999999999986543 122 345565555566666 899999986431
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC-CCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 377 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 377 (556)
+ .+++.+. .+..+|.||+|+|. .|..
T Consensus 506 -----~--~v~~~~l------~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 -----K--TITIEEL------EEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -----C--cCCHHHH------hhcCCCEEEEeCCCCCCCC
Confidence 1 1333332 34569999999997 4654
No 354
>PLN02463 lycopene beta cyclase
Probab=97.48 E-value=0.00092 Score=70.45 Aligned_cols=96 Identities=18% Similarity=0.241 Sum_probs=69.2
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-CCC-C----------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-MPG-F---------------------------------------- 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-l~~-~---------------------------------------- 308 (556)
.|+|||+|+.|+-+|..|++.|.+|.++++.+.. .|. +
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y~ 109 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPYG 109 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcce
Confidence 7999999999999999999999999999886532 111 0
Q ss_pred --C-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 309 --D-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 309 --d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+ .++.+.+.+.+.+ .||+++ ...|++|+..++ ...|.+.+| .++.+|.||.|+|..+.
T Consensus 110 ~V~R~~L~~~Ll~~~~~-~GV~~~-~~~V~~I~~~~~--~~~V~~~dG------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 110 RVNRKKLKSKMLERCIA-NGVQFH-QAKVKKVVHEES--KSLVVCDDG------VKIQASLVLDATGFSRC 170 (447)
T ss_pred eEEHHHHHHHHHHHHhh-cCCEEE-eeEEEEEEEcCC--eEEEEECCC------CEEEcCEEEECcCCCcC
Confidence 0 1112333344444 689886 467888886533 356777766 58999999999998764
No 355
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.46 E-value=0.0014 Score=68.44 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=71.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCCCC-------C---------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLMPG-------F--------------------------------- 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll~~-------~--------------------------------- 308 (556)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+. +
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 899999986431100 0
Q ss_pred ---------------------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCce
Q 008714 309 ---------------------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361 (556)
Q Consensus 309 ---------------------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~ 361 (556)
..++.+.+.+.+.+ .|++++.++.+++++.++ ..+.+++.++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~--~~v~v~~~~g------~~ 153 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEA-LGIDLREATSVTDFETRD--EGVTVTLSDG------SV 153 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEcC--CEEEEEECCC------CE
Confidence 01123444444554 689999999999987643 3366777665 57
Q ss_pred EecCEEEEeeCCCCCC
Q 008714 362 LEVDAALIATGRAPFT 377 (556)
Q Consensus 362 i~~D~vi~a~G~~p~~ 377 (556)
+.+|.||.|.|.....
T Consensus 154 ~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 154 LEARLLVAADGARSKL 169 (403)
T ss_pred EEeCEEEEcCCCChHH
Confidence 9999999999987654
No 356
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.46 E-value=0.0011 Score=68.81 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=70.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC--CCC---C------CCCH-------------HH--------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD--QLM---P------GFDP-------------EI-------------- 312 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~--~ll---~------~~d~-------------~~-------------- 312 (556)
+|+|||||+.|+-+|..|++.|.+|+++++.+ .+. + .+.+ .+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~~ 84 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLETW 84 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEEE
Confidence 69999999999999999999999999999764 110 0 0000 00
Q ss_pred ----------------------------HHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEec
Q 008714 313 ----------------------------GKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEV 364 (556)
Q Consensus 313 ----------------------------~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~ 364 (556)
...+.+.+.+..+++++.++++++++.++++ +.+++.+| .++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g------~~~~~ 156 (384)
T PRK08849 85 EHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESG------AEIEA 156 (384)
T ss_pred eCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCC------CEEEe
Confidence 0111122233246889999999998775433 66778776 68999
Q ss_pred CEEEEeeCCCCCCC
Q 008714 365 DAALIATGRAPFTN 378 (556)
Q Consensus 365 D~vi~a~G~~p~~~ 378 (556)
|+||.|.|....+-
T Consensus 157 ~lvIgADG~~S~vR 170 (384)
T PRK08849 157 KWVIGADGANSQVR 170 (384)
T ss_pred eEEEEecCCCchhH
Confidence 99999999987654
No 357
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.46 E-value=0.0011 Score=69.35 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=69.9
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC----------CCCC---CCH---------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ----------LMPG---FDP--------------------------- 310 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~----------ll~~---~d~--------------------------- 310 (556)
.|+|||+|+.|+-+|..|++.|.+|+++++.+. ..+. +.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 83 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEMQ 83 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeEE
Confidence 699999999999999999999999999998651 0000 000
Q ss_pred -----------------------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCce
Q 008714 311 -----------------------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361 (556)
Q Consensus 311 -----------------------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~ 361 (556)
.+.+.+.+.+.+ .|++++.++.+++++.++++ +.+++.+| .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~--v~v~~~~g------~~ 154 (405)
T PRK05714 84 VWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHD-SDIGLLANARLEQMRRSGDD--WLLTLADG------RQ 154 (405)
T ss_pred EEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhc-CCCEEEcCCEEEEEEEcCCe--EEEEECCC------CE
Confidence 011122233444 57888889999888765433 56777665 57
Q ss_pred EecCEEEEeeCCCCCC
Q 008714 362 LEVDAALIATGRAPFT 377 (556)
Q Consensus 362 i~~D~vi~a~G~~p~~ 377 (556)
+.+|.||.|.|....+
T Consensus 155 ~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 155 LRAPLVVAADGANSAV 170 (405)
T ss_pred EEeCEEEEecCCCchh
Confidence 9999999999986654
No 358
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.45 E-value=0.00048 Score=68.09 Aligned_cols=96 Identities=20% Similarity=0.360 Sum_probs=72.3
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccC
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYD 179 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 179 (556)
...++|||||..||..+.--.++|.+|++||- +.+|+. +|
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---------------------------------------mD 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---------------------------------------MD 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---------------------------------------cC
Confidence 35799999999999999999999999999997 666553 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe-----c-CCEEEEc-----cceEEEeCeEEEeCCCCCCCCC
Q 008714 180 RQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTIL-----G-PQKVKFG-----TDNIVTAKDIIIATGSVPFVPK 247 (556)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-----~-~~~v~~~-----~~~~~~~d~lViAtG~~p~~p~ 247 (556)
.++...++..+.+.|+++..++.+.. + .-.+.+. ..+++++|.|++++|-+|+.-+
T Consensus 252 ------------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 252 ------------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred ------------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccC
Confidence 34555666777788999999876521 1 1233332 2467999999999999998653
No 359
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.45 E-value=0.00055 Score=71.63 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHH-hCCCeEEEEEeCCCCCC-------CCCH---HHHHHHHHHHhCCCceEEEcCceEE
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYT-ALGSEVTFIEALDQLMP-------GFDP---EIGKLAQRVLINPRKIDYHTGVFAT 335 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~-~~g~~Vtli~~~~~ll~-------~~d~---~~~~~~~~~l~~~~gV~~~~~~~v~ 335 (556)
..+++|+|||+|+.|++.|..|. +.|.+|+++++.+.+.. ...+ .+.+.+.+.+.. .+++++.+..+-
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~-~~v~f~gnv~VG 115 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLS-PNYRFFGNVHVG 115 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhh-CCeEEEeeeEec
Confidence 45789999999999999998764 67999999999987632 1122 233344444444 577776543221
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
. .+++.+ ....+|.||+|+|..+.
T Consensus 116 ~----------Dvt~ee-------L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 116 V----------DLKMEE-------LRNHYNCVIFCCGASEV 139 (506)
T ss_pred C----------ccCHHH-------HHhcCCEEEEEcCCCCC
Confidence 0 122211 22368999999998753
No 360
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.45 E-value=0.00013 Score=75.80 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=35.4
Q ss_pred cEEEECCChHHHHHHHHHHHcC--CeEEEecC-CcCCcccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKG--LKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g--~~V~viEk-~~~GG~~~ 140 (556)
.++|||||.+||+||.+|++.+ .+++|+|+ +++||...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 5899999999999999999998 99999999 79999654
No 361
>PRK06753 hypothetical protein; Provisional
Probab=97.45 E-value=0.0013 Score=67.88 Aligned_cols=99 Identities=23% Similarity=0.261 Sum_probs=68.4
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CCHHHH--------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FDPEIG-------------------------------- 313 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d~~~~-------------------------------- 313 (556)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-.. +.+...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999988643110 011000
Q ss_pred ----------------HHHHHHHhC-CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 314 ----------------KLAQRVLIN-PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 314 ----------------~~~~~~l~~-~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
..+.+.|.+ -.+.++++++++++++.++ ..+.+++.+| .++.+|+||-|-|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~~~~g------~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET--DKVTIHFADG------ESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC--CcEEEEECCC------CEEecCEEEECCCcchH
Confidence 111222211 1235688899999998643 3367777776 57899999999997655
Q ss_pred C
Q 008714 377 T 377 (556)
Q Consensus 377 ~ 377 (556)
+
T Consensus 154 v 154 (373)
T PRK06753 154 V 154 (373)
T ss_pred H
Confidence 4
No 362
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.45 E-value=0.00035 Score=77.52 Aligned_cols=91 Identities=23% Similarity=0.264 Sum_probs=66.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-------CCC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-------MPG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-------l~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+ .|. +..++.+...+.+.+ .|+++++++.+. +
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~-~Gv~i~~~~~v~-~- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRA-MGAEFRFNTVFG-R- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHH-cCCEEEeCCccc-C-
Confidence 4579999999999999999999999999999988765 232 345555555566665 899998886431 0
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
.+.+.+. ...+|.|++|+|..+.
T Consensus 269 --------dv~~~~~-------~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 --------DITLEEL-------QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------ccCHHHH-------HhhcCEEEEEcCCCCC
Confidence 1222221 2359999999998753
No 363
>PRK06184 hypothetical protein; Provisional
Probab=97.44 E-value=0.0012 Score=71.23 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=70.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CC-----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD----------------------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d----------------------------------- 309 (556)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+. +.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 36999999999999999999999999999876532110 00
Q ss_pred -------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEec
Q 008714 310 -------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEV 364 (556)
Q Consensus 310 -------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~ 364 (556)
..+.+.+.+.+.+ .|++++.++++++++.++++ +.+++.+. ++.+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~-~gv~i~~~~~v~~i~~~~~~--v~v~~~~~---~~~~~i~a 157 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAE-LGHRVEFGCELVGFEQDADG--VTARVAGP---AGEETVRA 157 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHH-CCCEEEeCcEEEEEEEcCCc--EEEEEEeC---CCeEEEEe
Confidence 0122344455555 68999999999999875444 55555321 11257999
Q ss_pred CEEEEeeCCCC
Q 008714 365 DAALIATGRAP 375 (556)
Q Consensus 365 D~vi~a~G~~p 375 (556)
|.||.|.|...
T Consensus 158 ~~vVgADG~~S 168 (502)
T PRK06184 158 RYLVGADGGRS 168 (502)
T ss_pred CEEEECCCCch
Confidence 99999999654
No 364
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.44 E-value=0.0013 Score=71.63 Aligned_cols=104 Identities=24% Similarity=0.362 Sum_probs=73.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC--C---C------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP--G---F------------------------------------ 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~--~---~------------------------------------ 308 (556)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.+ . +
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 90 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGRC 90 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCCE
Confidence 5799999999999999999999999999987753210 0 0
Q ss_pred ----C-----------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEE
Q 008714 309 ----D-----------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAA 367 (556)
Q Consensus 309 ----d-----------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~v 367 (556)
+ +++.+.+.+.+.+..|+++++++++++++.++++ +.+++++. +++..++.+|.|
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~--~G~~~~i~ad~v 166 (538)
T PRK06183 91 LAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDA--DGQRETVRARYV 166 (538)
T ss_pred EEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcC--CCCEEEEEEEEE
Confidence 0 1122233343443248999999999999876444 66777642 112357999999
Q ss_pred EEeeCCCCCC
Q 008714 368 LIATGRAPFT 377 (556)
Q Consensus 368 i~a~G~~p~~ 377 (556)
|-|.|....+
T Consensus 167 VgADG~~S~v 176 (538)
T PRK06183 167 VGCDGANSFV 176 (538)
T ss_pred EecCCCchhH
Confidence 9999986544
No 365
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.44 E-value=0.00017 Score=80.27 Aligned_cols=41 Identities=29% Similarity=0.523 Sum_probs=37.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
...+|+|||||++|++||+.|.+.|++|+|+|+ +.+||.+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 457999999999999999999999999999999 88988755
No 366
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.44 E-value=0.0013 Score=68.25 Aligned_cols=98 Identities=21% Similarity=0.266 Sum_probs=69.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCCCCC---------CCH------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQLMPG---------FDP------------------------------ 310 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~ll~~---------~d~------------------------------ 310 (556)
.|+|||+|+.|+-+|..|++.| .+|+++++.+..-+. +.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3899999999999999999999 999999986532110 000
Q ss_pred -------------------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC
Q 008714 311 -------------------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD 365 (556)
Q Consensus 311 -------------------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D 365 (556)
++.+.+.+.+.+..|++++.++++++++.++++ +++++.+| .++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g------~~~~ad 152 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNG------QQLRAK 152 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCC------CEEEee
Confidence 112222333333138999999999998765433 56666665 579999
Q ss_pred EEEEeeCCCCC
Q 008714 366 AALIATGRAPF 376 (556)
Q Consensus 366 ~vi~a~G~~p~ 376 (556)
.||.|.|....
T Consensus 153 ~vV~AdG~~S~ 163 (382)
T TIGR01984 153 LLIAADGANSK 163 (382)
T ss_pred EEEEecCCChH
Confidence 99999997643
No 367
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.44 E-value=0.00037 Score=77.54 Aligned_cols=90 Identities=23% Similarity=0.332 Sum_probs=65.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+- |. ++.++.....+.+++ .||+++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~-~Gv~~~~~~~v~~-- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSA-MGIEFELNCEVGK-- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHH-CCeEEECCCEeCC--
Confidence 46899999999999999999999999999999876541 22 455665555566666 8999999875421
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
+ +.+.+ ....+|.|++|+|..+
T Consensus 403 ---~-----i~~~~-------~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 ---D-----ISLES-------LLEDYDAVFVGVGTYR 424 (654)
T ss_pred ---c-----CCHHH-------HHhcCCEEEEeCCCCC
Confidence 0 11111 1246999999999754
No 368
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.43 E-value=0.00014 Score=77.65 Aligned_cols=38 Identities=32% Similarity=0.596 Sum_probs=35.5
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
+|+|||||.+|+++|..|++.|++|+|+|+ +.+||.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceee
Confidence 589999999999999999999999999999 88999765
No 369
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.0043 Score=57.08 Aligned_cols=165 Identities=24% Similarity=0.251 Sum_probs=96.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-------CC-----HH------------------------
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------FD-----PE------------------------ 311 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-------~d-----~~------------------------ 311 (556)
..-.|+|||+|++|+-.|.+|++.|.+|.+++|+-.+-.+ |+ ++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence 3467999999999999999999999999999987544211 11 11
Q ss_pred ---HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCC-----CCCCceEecCEEEEeeCCCCCCCC----
Q 008714 312 ---IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKT-----KEPKDTLEVDAALIATGRAPFTNG---- 379 (556)
Q Consensus 312 ---~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~-----~~~~~~i~~D~vi~a~G~~p~~~~---- 379 (556)
.+..+.+.+ + .|.+++....++.+.-.++.++..+.+.-... --+-..++++.|+-+||.....-.
T Consensus 109 ~e~~skl~~~a~-~-aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~k 186 (262)
T COG1635 109 AEFASKLAARAL-D-AGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAK 186 (262)
T ss_pred HHHHHHHHHHHH-h-cCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHH
Confidence 112233333 3 67888888888887665443444444322110 011146889999999997554321
Q ss_pred ----CCCcccccc--c-CCC-ceeeCCCCccccCCCCcCCCEEEecccC----CCCCc---HHHHHHHHHHHHHHHh
Q 008714 380 ----LGLENINVV--T-QRG-FVPVDERMRVIDANGNLVPHLYCIGDAN----GKMML---AHAASAQGISVVEQVT 441 (556)
Q Consensus 380 ----l~l~~~~~~--~-~~G-~i~vd~~l~~~~~~~t~~~~Vya~GD~~----~~~~~---~~~A~~qg~~aa~~i~ 441 (556)
++.+-.|-. + +++ ...|+... .-+||+|++|=++ +.|+. --.-...|+.+|+.++
T Consensus 187 r~~~l~~~~~Ge~~mw~e~~E~lvV~~T~-------eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~ 256 (262)
T COG1635 187 RIPELGIEVPGEKSMWAERGEDLVVENTG-------EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEIL 256 (262)
T ss_pred hccccccccCCCcchhhhHHHHHHHhccc-------cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHH
Confidence 111111100 0 111 12223222 4589999999764 33432 2223457788887665
No 370
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.42 E-value=0.0011 Score=73.00 Aligned_cols=31 Identities=19% Similarity=0.081 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+|||||+.|+..|..++++|.+|+|||+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~ 343 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEY 343 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4799999999999999999999999999998
No 371
>PRK07588 hypothetical protein; Provisional
Probab=97.42 E-value=0.0015 Score=68.12 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=70.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-------------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG------------------------------------------- 307 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------- 307 (556)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 6999999999999999999999999999977543110
Q ss_pred --CC-----------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 308 --FD-----------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 308 --~d-----------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
++ .++.+.+.+.+ . .++++++++++++++.+++ .+.+++.+| +++++|+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~-~~v~i~~~~~v~~i~~~~~--~v~v~~~~g------~~~~~d~vI 151 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-D-GQVETIFDDSIATIDEHRD--GVRVTFERG------TPRDFDLVI 151 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-h-cCeEEEeCCEEeEEEECCC--eEEEEECCC------CEEEeCEEE
Confidence 00 00111111212 2 4699999999999987533 366778776 578999999
Q ss_pred EeeCCCCCCC
Q 008714 369 IATGRAPFTN 378 (556)
Q Consensus 369 ~a~G~~p~~~ 378 (556)
-|-|....+-
T Consensus 152 gADG~~S~vR 161 (391)
T PRK07588 152 GADGLHSHVR 161 (391)
T ss_pred ECCCCCccch
Confidence 9999876654
No 372
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.42 E-value=0.00047 Score=79.79 Aligned_cols=93 Identities=25% Similarity=0.299 Sum_probs=67.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
.++|+|||+|+.|+..|..|++.|.+|+++++.+.+. |. .+.++.+...+.+++ .||+++.+..+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~-~Gv~~~~~~~vg---- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVD-IGVKIETNKVIG---- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHH-CCCEEEeCCccC----
Confidence 4799999999999999999999999999999876542 22 356677766677776 899999986431
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC-CCC
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA-PFT 377 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~-p~~ 377 (556)
+ .+++.+- .....+|.||+|||.. |..
T Consensus 505 ----~--~~~~~~l-----~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 ----K--TFTVPQL-----MNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred ----C--ccCHHHH-----hhccCCCEEEEecCCCCCCC
Confidence 1 1222211 0124589999999984 543
No 373
>PTZ00367 squalene epoxidase; Provisional
Probab=97.41 E-value=0.00016 Score=78.25 Aligned_cols=34 Identities=35% Similarity=0.650 Sum_probs=32.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.++||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~ 65 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERD 65 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccc
Confidence 3589999999999999999999999999999994
No 374
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.41 E-value=0.00017 Score=79.30 Aligned_cols=40 Identities=33% Similarity=0.665 Sum_probs=34.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCC-ccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG-GTC 139 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~G-G~~ 139 (556)
..+||||||||..|.++|+.|++.|++|+|||++.++ |++
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtS 110 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTS 110 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcc
Confidence 3489999999999999999999999999999995543 443
No 375
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.41 E-value=0.00021 Score=75.87 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCC----ccccccCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVG----GTCVNRGC 144 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~G----G~~~~~g~ 144 (556)
..+||||||||.+|+++|..|++. +.+|+|+|| +.+| |.|+|.|.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt 56 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGT 56 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCc
Confidence 458999999999999999999999 899999999 7765 34555443
No 376
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.41 E-value=0.0037 Score=65.38 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=75.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-------------------------------CC--------
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-------------------------------GF-------- 308 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-------------------------------~~-------- 308 (556)
.+++++|||+|++|+-.|..|.+.|.+|++++|.+.+-. .|
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 368999999999999999999999999999998874411 00
Q ss_pred ---C-HHHHHHHHHHHhCCCce--EEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC--CCCC
Q 008714 309 ---D-PEIGKLAQRVLINPRKI--DYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA--PFTN 378 (556)
Q Consensus 309 ---d-~~~~~~~~~~l~~~~gV--~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~--p~~~ 378 (556)
+ .++.++++.+.+. .++ .+.+++.+.++....+| ...|...+..+. ..+.-+|.|++|+|.- |+..
T Consensus 85 ~~p~~~e~~~YL~~yA~~-F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~~~~--~~~~ifd~VvVctGh~~~P~~P 158 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKH-FDLLKMINFNTEVVRVDSIDKG-KWRVTTKDNGTQ--IEEEIFDAVVVCTGHYVEPRIP 158 (448)
T ss_pred cCCCHHHHHHHHHHHHHh-cChhhheEecccEEEEeeccCC-ceeEEEecCCcc--eeEEEeeEEEEcccCcCCCCCC
Confidence 1 1444566666544 554 56778878888765322 356666654221 2466799999999986 6554
No 377
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.40 E-value=0.00057 Score=73.23 Aligned_cols=81 Identities=21% Similarity=0.209 Sum_probs=62.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVT 347 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~ 347 (556)
.+++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.+++ .||+++.+..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~-~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEA-LGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHH-cCCEEEECCCcc------------
Confidence 467999999999999999999999999999987642 233445556665 788887764321
Q ss_pred EEEecCCCCCCCceEecCEEEEeeCCCCCCCCC
Q 008714 348 IELIDAKTKEPKDTLEVDAALIATGRAPFTNGL 380 (556)
Q Consensus 348 v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l 380 (556)
....+|+||+++|..|+.+.+
T Consensus 75 ------------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------------ccCCCCEEEECCCcCCCCHHH
Confidence 023589999999999998743
No 378
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.39 E-value=0.0025 Score=65.35 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
+.+.+.+.+.+..|+++++++.|++|+...++. ..|...+-.+ ++..++.++.|++..|--
T Consensus 183 LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~-~~~~~v~a~FVfvGAGG~ 243 (488)
T PF06039_consen 183 LTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKT-GEKREVRAKFVFVGAGGG 243 (488)
T ss_pred HHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCC-CCeEEEECCEEEECCchH
Confidence 444555556664599999999999999876663 4455544321 234689999999998854
No 379
>PRK08244 hypothetical protein; Provisional
Probab=97.38 E-value=0.0012 Score=70.98 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=72.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC------------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG------------------------------------------ 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------ 307 (556)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+...+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999976532100
Q ss_pred -CC--------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC
Q 008714 308 -FD--------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG 372 (556)
Q Consensus 308 -~d--------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G 372 (556)
+. ..+.+.+.+.+++ .|++++.++++++++.++++ +.+++.+.. + ..++.+|.||.|.|
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~-~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~--g-~~~i~a~~vVgADG 156 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARS-LGVEIFRGAEVLAVRQDGDG--VEVVVRGPD--G-LRTLTSSYVVGADG 156 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHH-cCCeEEeCCEEEEEEEcCCe--EEEEEEeCC--c-cEEEEeCEEEECCC
Confidence 00 1233444555555 78999999999999875443 556665321 1 24789999999999
Q ss_pred CCCC
Q 008714 373 RAPF 376 (556)
Q Consensus 373 ~~p~ 376 (556)
....
T Consensus 157 ~~S~ 160 (493)
T PRK08244 157 AGSI 160 (493)
T ss_pred CChH
Confidence 8653
No 380
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.37 E-value=0.0002 Score=72.94 Aligned_cols=40 Identities=38% Similarity=0.679 Sum_probs=35.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcC-CeEEEecC-CcCCccccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKG-LKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g-~~V~viEk-~~~GG~~~~ 141 (556)
.+|||||||.|||+||.+|.+.| .+++|+|. +++||+...
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 58999999999999999999876 46999999 999998763
No 381
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.36 E-value=0.00061 Score=76.55 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
..+++|+|||+|+.|+.+|..|++.|.+||++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35789999999999999999999999999999975
No 382
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.36 E-value=0.00023 Score=77.82 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
....+|+|||||++|+++|..|++.|++|+||||
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 4568999999999999999999999999999999
No 383
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.36 E-value=0.0002 Score=76.66 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=35.4
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
|||+|||+||+|+.+|..|++.|++|+|||+ ...|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999 67776554
No 384
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.36 E-value=0.0023 Score=66.54 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=70.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-----------------------CC------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-----------------------GF------------------ 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-----------------------~~------------------ 308 (556)
-+|+|||||+.|+-+|..|.+.|.+|+++++.+.... ++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 3699999999999999999999999999998754311 00
Q ss_pred ------------------------CHHHHHHHHHHHhCCCc-eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEe
Q 008714 309 ------------------------DPEIGKLAQRVLINPRK-IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLE 363 (556)
Q Consensus 309 ------------------------d~~~~~~~~~~l~~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~ 363 (556)
...+.+.+.+.+.+ .+ ++++ +..++++...++ .+.+++.++ .++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~-~~~v~~~-~~~v~~i~~~~~--~~~v~~~~g------~~~~ 155 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRF-QPNLTWF-PARAQGLEVDPD--AATLTLADG------QVLR 155 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHh-CCCcEEE-cceeEEEEecCC--eEEEEECCC------CEEE
Confidence 01122233344444 55 8888 888888876433 356777665 5799
Q ss_pred cCEEEEeeCCCCCC
Q 008714 364 VDAALIATGRAPFT 377 (556)
Q Consensus 364 ~D~vi~a~G~~p~~ 377 (556)
+|.||.|.|.....
T Consensus 156 a~~vI~adG~~S~v 169 (388)
T PRK07608 156 ADLVVGADGAHSWV 169 (388)
T ss_pred eeEEEEeCCCCchH
Confidence 99999999986544
No 385
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.35 E-value=0.00061 Score=77.70 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEEe
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKITP 339 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~ 339 (556)
+++|+|||||+.|+..|..|++.|.+|+++++.+.+. |. .+.+......+.+.+ .||+++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~-~GVe~~~g~~~----- 610 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKF-HGVEFKYGCSP----- 610 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHh-cCcEEEEeccc-----
Confidence 4799999999999999999999999999999876431 22 234444444455555 79998887321
Q ss_pred cCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 340 AKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 340 ~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+ +.+.+. ....+|.|++|+|..+.
T Consensus 611 --d-----~~ve~l------~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 611 --D-----LTVAEL------KNQGYKYVILAIGAWKH 634 (1012)
T ss_pred --c-----eEhhhh------hcccccEEEECCCCCCC
Confidence 0 122221 34568999999998754
No 386
>PRK08013 oxidoreductase; Provisional
Probab=97.35 E-value=0.002 Score=67.36 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=70.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC--C---------CCH----------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP--G---------FDP---------------------------- 310 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~--~---------~d~---------------------------- 310 (556)
..|+|||+|+.|+-+|..|++.|.+|+++++.+..-+ . +.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 3699999999999999999999999999998754210 0 011
Q ss_pred ----------------------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE
Q 008714 311 ----------------------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362 (556)
Q Consensus 311 ----------------------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i 362 (556)
++.+.+.+.+.+..+|+++.+++++.++.+++ .+.+++.+| +++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~v~~~~g------~~i 155 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN--EAFLTLKDG------SML 155 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eEEEEEcCC------CEE
Confidence 01112222233323788888888888876543 366777665 579
Q ss_pred ecCEEEEeeCCCCCC
Q 008714 363 EVDAALIATGRAPFT 377 (556)
Q Consensus 363 ~~D~vi~a~G~~p~~ 377 (556)
.+|+||-|-|....+
T Consensus 156 ~a~lvVgADG~~S~v 170 (400)
T PRK08013 156 TARLVVGADGANSWL 170 (400)
T ss_pred EeeEEEEeCCCCcHH
Confidence 999999999987654
No 387
>PLN02612 phytoene desaturase
Probab=97.34 E-value=0.00031 Score=76.56 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG 372 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G 372 (556)
..+.+.+.+.+++ .|.++++++.|++|+.++++..+.+++.+| +++++|.||++++
T Consensus 308 ~~l~~~l~~~l~~-~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G------~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQS-LGGEVRLNSRIKKIELNDDGTVKHFLLTNG------SVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCeeeEEEECCCCcEEEEEECCC------cEEECCEEEECCC
Confidence 4566777777776 799999999999998765665556777666 5789999999976
No 388
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.32 E-value=0.00016 Score=72.14 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCceEEEcCceEEEEEec-CCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 313 GKLAQRVLINPRKIDYHTGVFATKITPA-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 313 ~~~~~~~l~~~~gV~~~~~~~v~~i~~~-~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
..++...+.+ .+++++.++.|++|..+ ++++...|++.+.........+.++.||+|.|..-...
T Consensus 196 ~~~L~~a~~~-~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~ 261 (296)
T PF00732_consen 196 TTYLPPALKR-PNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPR 261 (296)
T ss_dssp HHHHHHHTTT-TTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHH
T ss_pred hcccchhhcc-CCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChh
Confidence 4456666544 59999999999999553 34566677777653221125677899999999654443
No 389
>PLN02487 zeta-carotene desaturase
Probab=97.32 E-value=0.00031 Score=75.95 Aligned_cols=40 Identities=30% Similarity=0.576 Sum_probs=36.7
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
..+|+|||||++|+++|..|++.|++|+|+|+ +.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 46999999999999999999999999999999 78888654
No 390
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.31 E-value=0.0023 Score=66.94 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=70.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC-CCCC----C-----CCCH-----------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL-DQLM----P-----GFDP----------------------------- 310 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~-~~ll----~-----~~d~----------------------------- 310 (556)
.+|+|||+|+.|+-+|..|++.|.+|+++++. +... + .+.+
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 84 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW 84 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence 47999999999999999999999999999985 1100 0 0000
Q ss_pred ---------------------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEe
Q 008714 311 ---------------------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLE 363 (556)
Q Consensus 311 ---------------------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~ 363 (556)
.+.+.+.+.+.+..+|+++.++++++++.+++ .+.+++.+| +++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~~~v~~~~g------~~~~ 156 (405)
T PRK08850 85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES--EAWLTLDNG------QALT 156 (405)
T ss_pred eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--eEEEEECCC------CEEE
Confidence 01122223333324789999999998876433 366777766 5899
Q ss_pred cCEEEEeeCCCCCC
Q 008714 364 VDAALIATGRAPFT 377 (556)
Q Consensus 364 ~D~vi~a~G~~p~~ 377 (556)
+|+||.|.|.....
T Consensus 157 a~lvIgADG~~S~v 170 (405)
T PRK08850 157 AKLVVGADGANSWL 170 (405)
T ss_pred eCEEEEeCCCCChh
Confidence 99999999976654
No 391
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.26 E-value=0.0031 Score=65.92 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=71.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---------C---------CCC----------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---------P---------GFD---------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---------~---------~~d---------------------- 309 (556)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+. | ++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 689999999999999999999999999999776321 0 000
Q ss_pred ------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC
Q 008714 310 ------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD 365 (556)
Q Consensus 310 ------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D 365 (556)
.++.+.+.+.+.+..++++++++++++++.++++ +.+++.++. .++++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~---~~~~~~ad 157 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTN---SVETVSAA 157 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCC---CCcEEecC
Confidence 0111223333333247899999999999764333 566664331 12578999
Q ss_pred EEEEeeCCCCCC
Q 008714 366 AALIATGRAPFT 377 (556)
Q Consensus 366 ~vi~a~G~~p~~ 377 (556)
+||-|-|....+
T Consensus 158 lvIgADG~~S~v 169 (400)
T PRK06475 158 YLIACDGVWSML 169 (400)
T ss_pred EEEECCCccHhH
Confidence 999999986544
No 392
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0013 Score=69.44 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=46.7
Q ss_pred eEEEEEeCCCCCCCCCHHH-HHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC
Q 008714 294 EVTFIEALDQLMPGFDPEI-GKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG 372 (556)
Q Consensus 294 ~Vtli~~~~~ll~~~d~~~-~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G 372 (556)
.-.++.+.+.. +||-. ...+.....+ .|..++.++.|++|....+ +...|++.-| .|++..++-|+|
T Consensus 173 ~g~Ly~P~DG~---~DP~~lC~ala~~A~~-~GA~viE~cpV~~i~~~~~-~~~gVeT~~G-------~iet~~~VNaaG 240 (856)
T KOG2844|consen 173 YGGLYSPGDGV---MDPAGLCQALARAASA-LGALVIENCPVTGLHVETD-KFGGVETPHG-------SIETECVVNAAG 240 (856)
T ss_pred eeeeecCCCcc---cCHHHHHHHHHHHHHh-cCcEEEecCCcceEEeecC-CccceeccCc-------ceecceEEechh
Confidence 34566666644 35543 3455555554 9999999999999987633 3346666554 788999999998
Q ss_pred C
Q 008714 373 R 373 (556)
Q Consensus 373 ~ 373 (556)
+
T Consensus 241 v 241 (856)
T KOG2844|consen 241 V 241 (856)
T ss_pred H
Confidence 4
No 393
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.26 E-value=0.0028 Score=65.77 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=69.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC---C----C---CCH------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM---P----G---FDP------------------------------ 310 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll---~----~---~d~------------------------------ 310 (556)
.|+|||+|+.|+-+|..|++.|.+|+++++.+..- + . +.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 38999999999999999999999999999885320 0 0 111
Q ss_pred --------------------------HHHHHHHHHHhCCCc-eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEe
Q 008714 311 --------------------------EIGKLAQRVLINPRK-IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLE 363 (556)
Q Consensus 311 --------------------------~~~~~~~~~l~~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~ 363 (556)
++.+.+.+.+.+ .+ ++++.++.+++++..++ .+.+++.+| +++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~~~~v~~~~~v~~i~~~~~--~~~v~~~~g------~~~~ 151 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQE-YPNVTLLCPARVVELPRHSD--HVELTLDDG------QQLR 151 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHh-CCCcEEecCCeEEEEEecCC--eeEEEECCC------CEEE
Confidence 011222233333 45 88999999998876433 356777665 5799
Q ss_pred cCEEEEeeCCCCCC
Q 008714 364 VDAALIATGRAPFT 377 (556)
Q Consensus 364 ~D~vi~a~G~~p~~ 377 (556)
+|.||.|.|.....
T Consensus 152 ~~~vi~adG~~S~v 165 (385)
T TIGR01988 152 ARLLVGADGANSKV 165 (385)
T ss_pred eeEEEEeCCCCCHH
Confidence 99999999976543
No 394
>PRK07190 hypothetical protein; Provisional
Probab=97.25 E-value=0.0033 Score=67.31 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=70.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC----------------------------------------CC-
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP----------------------------------------GF- 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~----------------------------------------~~- 308 (556)
-.|+|||+|++|+-+|..|++.|.+|.++++.+.... .+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999999999987653210 00
Q ss_pred ----------C------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 309 ----------D------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 309 ----------d------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
+ ..+.+.+.+.+.+ .|++++.++.++.++.++++ +.+.+.+| +++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~-~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g------~~v~a~~ 156 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKE-AGAAVKRNTSVVNIELNQAG--CLTTLSNG------ERIQSRY 156 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEEcCCe--eEEEECCC------cEEEeCE
Confidence 0 0112233444555 79999999999999876444 45555554 4789999
Q ss_pred EEEeeCCCC
Q 008714 367 ALIATGRAP 375 (556)
Q Consensus 367 vi~a~G~~p 375 (556)
||.|.|...
T Consensus 157 vVgADG~~S 165 (487)
T PRK07190 157 VIGADGSRS 165 (487)
T ss_pred EEECCCCCH
Confidence 999999755
No 395
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0039 Score=62.05 Aligned_cols=98 Identities=23% Similarity=0.284 Sum_probs=68.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCe-EEEEEeCC-C----------CCCCCC-----HHHHHHHHHHHhCCCceEEEcCce
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSE-VTFIEALD-Q----------LMPGFD-----PEIGKLAQRVLINPRKIDYHTGVF 333 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~-Vtli~~~~-~----------ll~~~d-----~~~~~~~~~~l~~~~gV~~~~~~~ 333 (556)
.|+|||+|+.|+-.|-++.+.+.+ +.+++... . -.|+++ +++.+.+.+..++ .++++.. ..
T Consensus 5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~-~~~~~~~-~~ 82 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEK-FGVEIVE-DE 82 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhh-cCeEEEE-EE
Confidence 699999999999999999999988 55554321 1 123333 4555566666554 7888887 56
Q ss_pred EEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCC
Q 008714 334 ATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNG 379 (556)
Q Consensus 334 v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~ 379 (556)
+.+++..++ ...|...++ +++++.||+|+|..+....
T Consensus 83 v~~v~~~~~--~F~v~t~~~-------~~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKG-------TYEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCc--eEEEEECCC-------eEEEeEEEECcCCcccCCC
Confidence 777765422 456666554 4999999999998776543
No 396
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.24 E-value=0.00091 Score=73.11 Aligned_cols=91 Identities=24% Similarity=0.259 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------C--CCCHHHHHHHHHHHhCCCceEEEcCceE-EE
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------P--GFDPEIGKLAQRVLINPRKIDYHTGVFA-TK 336 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~~gV~~~~~~~v-~~ 336 (556)
..+++|+|||+|++|+..|..|++.|.+|+++++.+.+. | .++.++.+.-.+.+.+ .|++++.+..+ ..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~-~Gv~~~~~~~~~~~ 213 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILD-LGVEVRLGVRVGED 213 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHH-CCCEEEeCCEECCc
Confidence 346899999999999999999999999999999876542 1 2344554444445555 88998887644 21
Q ss_pred EEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 337 ITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 337 i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+.. .+ ....+|.|++|+|..+.
T Consensus 214 ~~~-----------~~-------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 214 ITL-----------EQ-------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCH-----------HH-------HHhhCCEEEEeeCCCCC
Confidence 111 00 12248999999998653
No 397
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.23 E-value=0.00034 Score=75.38 Aligned_cols=37 Identities=35% Similarity=0.617 Sum_probs=33.6
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~G 136 (556)
.++||||||||.|||.||..+++.|.+|+|+|| ...+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 468999999999999999999999999999999 4443
No 398
>PLN03000 amine oxidase
Probab=97.22 E-value=0.00036 Score=77.81 Aligned_cols=42 Identities=31% Similarity=0.558 Sum_probs=38.7
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
...+|+|||||++|+.+|..|.+.|++|+|+|+ +.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 458999999999999999999999999999999 889998763
No 399
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.21 E-value=0.00089 Score=69.32 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhCCCeEEEEEeCCCCC-C--CCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCC--Ce-EEEEEecC
Q 008714 280 IGLEFSDVYTALGSEVTFIEALDQLM-P--GFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDG--KP-VTIELIDA 353 (556)
Q Consensus 280 ~g~e~A~~l~~~g~~Vtli~~~~~ll-~--~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g--~~-~~v~~~~g 353 (556)
+++|+-..|.++=.++.=+..-..+. . ..-+.+...+.+.|++ +||++.++++|+.|+-+.++ +. ..+.+...
T Consensus 174 Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~-~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~ 252 (500)
T PF06100_consen 174 SAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKS-QGVDFRFNTKVTDIDFDITGDKKTATRIHIEQD 252 (500)
T ss_pred hHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEEccCCCeeEEEEEEEcC
Confidence 78999988887632221111111111 0 1234577788999987 99999999999998764332 22 23444322
Q ss_pred CCCCCCceE---ecCEEEEeeCCCCCCC
Q 008714 354 KTKEPKDTL---EVDAALIATGRAPFTN 378 (556)
Q Consensus 354 ~~~~~~~~i---~~D~vi~a~G~~p~~~ 378 (556)
+.++.| +-|+|++..|..-...
T Consensus 253 ---g~~~~i~l~~~DlV~vT~GS~t~~s 277 (500)
T PF06100_consen 253 ---GKEETIDLGPDDLVFVTNGSMTEGS 277 (500)
T ss_pred ---CCeeEEEeCCCCEEEEECCcccccc
Confidence 122333 3689999888755433
No 400
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.20 E-value=0.0042 Score=67.04 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=65.8
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC-CC--CC-----------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD-QL--MP----------------------------------------- 306 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~-~l--l~----------------------------------------- 306 (556)
.|+|||||+.|++.|..+++.|.+|.++++.. .+ ++
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 59999999999999999999999999998873 11 00
Q ss_pred ----------CCCHH-HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 307 ----------GFDPE-IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 307 ----------~~d~~-~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
.+|.. +...+.+.+++..|+.++ ...+.++..+ +++...|.+.+| ..+.++.||+|+|.
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e-~grV~GV~t~dG------~~I~Ak~VIlATGT 155 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVE-NGRVVGVVTQDG------LEFRAKAVVLTTGT 155 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEec-CCEEEEEEECCC------CEEECCEEEEeeCc
Confidence 00111 123333445543478875 4457776643 445556777666 68999999999995
No 401
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.19 E-value=0.00092 Score=64.59 Aligned_cols=85 Identities=25% Similarity=0.246 Sum_probs=53.7
Q ss_pred HHhCC-CeEEEEEeCCCCCCCCCHHHHHHHHHHHhC-----CCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCce
Q 008714 288 YTALG-SEVTFIEALDQLMPGFDPEIGKLAQRVLIN-----PRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361 (556)
Q Consensus 288 l~~~g-~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~-----~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~ 361 (556)
|+++| ..|---+|+.+.+|.. .++...+...+++ ..-+++.++++++.|..+ ++++..|++.|.+ ++...
T Consensus 117 la~lgGHSvpRTHr~s~plppg-fei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n-~gkVsgVeymd~s--gek~~ 192 (477)
T KOG2404|consen 117 LAQLGGHSVPRTHRSSGPLPPG-FEIVKALSTRLKKKASENPELVKILLNSKVVDILRN-NGKVSGVEYMDAS--GEKSK 192 (477)
T ss_pred HHHhcCCCCCcccccCCCCCCc-hHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecC-CCeEEEEEEEcCC--CCccc
Confidence 34443 4454555777666542 2344444444322 124788899999999954 7777778877653 33456
Q ss_pred EecCEEEEeeCCCCC
Q 008714 362 LEVDAALIATGRAPF 376 (556)
Q Consensus 362 i~~D~vi~a~G~~p~ 376 (556)
+..|.|++|+|--..
T Consensus 193 ~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 193 IIGDAVVLATGGFGY 207 (477)
T ss_pred eecCceEEecCCcCc
Confidence 789999999986544
No 402
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.19 E-value=0.0009 Score=70.23 Aligned_cols=92 Identities=25% Similarity=0.334 Sum_probs=70.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-------CC--CCHHHHHHHHHHHhCCCceEEEcCceEEEEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-------PG--FDPEIGKLAQRVLINPRKIDYHTGVFATKIT 338 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~ 338 (556)
..++|+|||+|+.|+..|..|++.|..||++++.+..- |. ++.++.+...+.|++ .|++++.++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~-~Gv~~~~~~~vG~-- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLER-SGVEFKLNVRVGR-- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHH-cCeEEEEcceECC--
Confidence 34899999999999999999999999999998877542 32 567888888888887 8899999875521
Q ss_pred ecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC-CCCC
Q 008714 339 PAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR-APFT 377 (556)
Q Consensus 339 ~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~-~p~~ 377 (556)
.+++++ ..-++|.|++++|. .|..
T Consensus 199 --------~it~~~-------L~~e~Dav~l~~G~~~~~~ 223 (457)
T COG0493 199 --------DITLEE-------LLKEYDAVFLATGAGKPRP 223 (457)
T ss_pred --------cCCHHH-------HHHhhCEEEEeccccCCCC
Confidence 122221 23356999999997 4443
No 403
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.19 E-value=0.0047 Score=63.89 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=68.8
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC----CCCC--C---CCH-------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD----QLMP--G---FDP------------------------------- 310 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~----~ll~--~---~d~------------------------------- 310 (556)
+|+|||||+.|+-+|..|++.|.+|+++++.+ .+.+ . +.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999752 1100 0 111
Q ss_pred ----------------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 311 ----------------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 311 ----------------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
++.+.+.+.+.+..+++++.+++++++..++++ +.+.+.+ .++.+|+||
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~-------~~~~adlvI 153 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDD-------KQIKCNLLI 153 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcC-------CEEeeCEEE
Confidence 122333333444235888888888888765433 5666643 379999999
Q ss_pred EeeCCCCCCC
Q 008714 369 IATGRAPFTN 378 (556)
Q Consensus 369 ~a~G~~p~~~ 378 (556)
-|-|....+-
T Consensus 154 gADG~~S~vR 163 (374)
T PRK06617 154 ICDGANSKVR 163 (374)
T ss_pred EeCCCCchhH
Confidence 9999876653
No 404
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.18 E-value=0.0038 Score=57.70 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=65.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-------CC-------------------------------HH
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-------FD-------------------------------PE 311 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-------~d-------------------------------~~ 311 (556)
-.|+|||+|++|+-+|..|++.|.+|.+++++..+-.. |. .+
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~~ 97 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSVE 97 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHHH
Confidence 46999999999999999999999999999987543211 11 01
Q ss_pred HH-HHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecC--CC---CCCCceEecCEEEEeeCCCCCCC
Q 008714 312 IG-KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDA--KT---KEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 312 ~~-~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g--~~---~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
.. .++.+.+ + .|++++....++.+--.++++...+..... .. .-+--.+++..||-+||...+.-
T Consensus 98 ~~s~L~s~a~-~-aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 98 FTSTLASKAI-D-AGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp HHHHHHHHHH-T-TTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred HHHHHHHHHh-c-CCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 11 2233333 4 799999999998887654455444444221 00 00114789999999999877654
No 405
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.17 E-value=0.0051 Score=64.04 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=68.9
Q ss_pred CeEEEEcCchhHHHHHHHHHhC---CCeEEEEEeCC-C--CCCCC-------C-------------H-------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL---GSEVTFIEALD-Q--LMPGF-------D-------------P------------- 310 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~---g~~Vtli~~~~-~--ll~~~-------d-------------~------------- 310 (556)
-+|+|||+|+.|+-+|..|++. |.+|+++++.. . ..+.+ . +
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 3699999999999999999998 99999999841 1 00000 0 0
Q ss_pred -----------------------------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCce
Q 008714 311 -----------------------------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDT 361 (556)
Q Consensus 311 -----------------------------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~ 361 (556)
++.+.+.+.+.+..|++++.+++++++...++ .+.+++.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~--~~~v~~~~g------~~ 155 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQG--SVRVTLDDG------ET 155 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC--eEEEEECCC------CE
Confidence 11122333333334788888989988876433 355666655 57
Q ss_pred EecCEEEEeeCCCCCC
Q 008714 362 LEVDAALIATGRAPFT 377 (556)
Q Consensus 362 i~~D~vi~a~G~~p~~ 377 (556)
+.+|.||.|.|.....
T Consensus 156 ~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 156 LTGRLLVAADGSHSAL 171 (395)
T ss_pred EEeCEEEEecCCChhh
Confidence 8999999999987653
No 406
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.16 E-value=0.00039 Score=74.18 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVG 136 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~G 136 (556)
+||+|||||.+|+++|..|++. |.+|+|+|| +.+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 5999999999999999999998 999999999 5444
No 407
>PLN02976 amine oxidase
Probab=97.14 E-value=0.00049 Score=79.53 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=39.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
...+||+|||||++|+++|..|.+.|++|+|||+ +.+||.|..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3458999999999999999999999999999999 889998764
No 408
>PRK13984 putative oxidoreductase; Provisional
Probab=97.14 E-value=0.0013 Score=72.48 Aligned_cols=91 Identities=27% Similarity=0.290 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC-------CCC--CCHHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL-------MPG--FDPEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l-------l~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
...++++|||+|+.|+..|..|.+.|.+|+++++.+.+ +|. +..++.....+.+++ .|++++.++.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~-~gv~~~~~~~v~~- 358 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEA-LGVKIHLNTRVGK- 358 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHH-CCcEEECCCEeCC-
Confidence 34689999999999999999999999999999987754 121 234444444456666 8999999876521
Q ss_pred EecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 338 TPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 338 ~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
+ +.+.+ ....+|.||+|+|..+
T Consensus 359 ----~-----~~~~~-------~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 359 ----D-----IPLEE-------LREKHDAVFLSTGFTL 380 (604)
T ss_pred ----c-----CCHHH-------HHhcCCEEEEEcCcCC
Confidence 0 11111 2357999999999753
No 409
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.13 E-value=0.004 Score=65.41 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=66.7
Q ss_pred eEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCCCCC-----CCH-------------HH-------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQLMPG-----FDP-------------EI------------------- 312 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~ll~~-----~d~-------------~~------------------- 312 (556)
+|+|||||+.|+-+|..|++.| .+|+++++.+.+-+. +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999987653210 000 00
Q ss_pred ----------------------HHHHHHHHhCC-CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEE
Q 008714 313 ----------------------GKLAQRVLINP-RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALI 369 (556)
Q Consensus 313 ----------------------~~~~~~~l~~~-~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~ 369 (556)
...+.+.|.+. .++.+++++++++++..+++ +++.+.++ .++++|.||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g------~~~~ad~vVg 153 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDG------TEYRCDLLIG 153 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCC------CEEEeeEEEE
Confidence 00111112111 13456788889888765433 67777776 5799999999
Q ss_pred eeCCCCC
Q 008714 370 ATGRAPF 376 (556)
Q Consensus 370 a~G~~p~ 376 (556)
|.|....
T Consensus 154 ADG~~S~ 160 (414)
T TIGR03219 154 ADGIKSA 160 (414)
T ss_pred CCCccHH
Confidence 9997653
No 410
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.10 E-value=0.0005 Score=73.46 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=32.4
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~G 136 (556)
.++||+|||||..|+++|++|+++ |.+|+|||| ..+|
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 358999999999999999999985 789999999 4444
No 411
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.10 E-value=0.0056 Score=63.68 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=65.8
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CC------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FD------------------------------------ 309 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d------------------------------------ 309 (556)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3899999999999999999999999999976533110 00
Q ss_pred ----HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 310 ----PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 310 ----~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
.++.+.+.+.+.+ .|++++ ...+..++.. ++....+++.++ .++.+|.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~-~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPE-GGVLWL-ERKAIHAEAD-GVALSTVYCAGG------QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHh-cCcEEE-ccEEEEEEec-CCceeEEEeCCC------CEEEeCEEEECCCCch
Confidence 1112333333444 578776 4467777654 233455666554 5899999999999877
No 412
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.10 E-value=0.0073 Score=62.80 Aligned_cols=99 Identities=22% Similarity=0.242 Sum_probs=67.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC----CC------------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG----FD------------------------------------ 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~----~d------------------------------------ 309 (556)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..-.. +.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 46999999999999999999999999999987532100 00
Q ss_pred -----------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 310 -----------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 310 -----------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
.++.+.+.+.+.+..++. +.++.+.+++..+++ +.+++.++ +++.+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g------~~~~a~~ 158 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADG------TTLSARL 158 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCC------CEEEEeE
Confidence 011223333344322455 678888888764333 55666655 5799999
Q ss_pred EEEeeCCCCCC
Q 008714 367 ALIATGRAPFT 377 (556)
Q Consensus 367 vi~a~G~~p~~ 377 (556)
||.|.|.....
T Consensus 159 vI~AdG~~S~v 169 (388)
T PRK07494 159 VVGADGRNSPV 169 (388)
T ss_pred EEEecCCCchh
Confidence 99999986643
No 413
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.10 E-value=0.0053 Score=63.90 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=70.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC----------------------------CCC-------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM----------------------------PGF------------- 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll----------------------------~~~------------- 308 (556)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+..- +.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 479999999999999999999999999999764100 000
Q ss_pred ----------C---------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEe
Q 008714 309 ----------D---------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLE 363 (556)
Q Consensus 309 ----------d---------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~ 363 (556)
+ ..+.+.+.+.+.+..|++++.++.++++..+++ .+.+.+.++ .++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g------~~~~ 157 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD--GWELTLADG------EEIQ 157 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC--eEEEEECCC------CEEE
Confidence 0 011123333344423899999999998876533 356666665 5799
Q ss_pred cCEEEEeeCCCCCC
Q 008714 364 VDAALIATGRAPFT 377 (556)
Q Consensus 364 ~D~vi~a~G~~p~~ 377 (556)
+|.||.|.|.....
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987754
No 414
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.09 E-value=0.0058 Score=64.39 Aligned_cols=96 Identities=25% Similarity=0.325 Sum_probs=66.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC------------------CCCC-----------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM------------------PGFD----------------------- 309 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll------------------~~~d----------------------- 309 (556)
.|+|||+|+.|+-+|..|++.|.+|.++++.+..- |.+.
T Consensus 7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (428)
T PRK10157 7 DAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAM 86 (428)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCce
Confidence 69999999999999999999999999999864321 0000
Q ss_pred ---------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 310 ---------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 310 ---------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
.++.+.+.+..++ .|++++.++.++++..+ ++..+.+ ..++ .++.+|.||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~~~-~g~v~~v-~~~g------~~i~A~~VI 157 (428)
T PRK10157 87 TMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLVQR-DGKVVGV-EADG------DVIEAKTVI 157 (428)
T ss_pred eeccccccccCCCCCceeeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEe-CCEEEEE-EcCC------cEEECCEEE
Confidence 0011233344444 78999999999998764 3333223 2333 478999999
Q ss_pred EeeCCCC
Q 008714 369 IATGRAP 375 (556)
Q Consensus 369 ~a~G~~p 375 (556)
.|.|...
T Consensus 158 ~A~G~~s 164 (428)
T PRK10157 158 LADGVNS 164 (428)
T ss_pred EEeCCCH
Confidence 9999743
No 415
>PRK02106 choline dehydrogenase; Validated
Probab=97.09 E-value=0.00054 Score=74.84 Aligned_cols=35 Identities=34% Similarity=0.549 Sum_probs=32.2
Q ss_pred CCCccEEEECCChHHHHHHHHHHH-cCCeEEEecCC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVE-KGLKTAIIEGD 133 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~viEk~ 133 (556)
...||+||||+|++|+.+|.+|++ .|.+|+|||++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG 38 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence 345899999999999999999999 79999999994
No 416
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.09 E-value=0.0053 Score=71.41 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=69.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC----------CC-HHHHHHHHHHHhCCCceEEEcCceEEEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG----------FD-PEIGKLAQRVLINPRKIDYHTGVFATKI 337 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~----------~d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i 337 (556)
..+|+|||+|+.|+..|..+++.|.+|++++..+.+... .+ .++...+.+.+.+..+|+++.++.+..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 467999999999999999999999999999987654321 11 2333334455554236999999988877
Q ss_pred EecCCCCeEEEE-Ee-------cCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 338 TPAKDGKPVTIE-LI-------DAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 338 ~~~~~g~~~~v~-~~-------~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
.. .+....+. .. ++...+...++.+|.||+|||..|..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 22111121 11 11011111368999999999988754
No 417
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.05 E-value=0.0026 Score=65.64 Aligned_cols=94 Identities=19% Similarity=0.215 Sum_probs=62.3
Q ss_pred eEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCCCCC-----CCHHHHH----HH-----------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLMPG-----FDPEIGK----LA----------------------- 316 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~ll~~-----~d~~~~~----~~----------------------- 316 (556)
.|+|||+|+.|+.+|..|.+. |.+|.++++.+.+.+. ++.++.+ .+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 389999999999999999987 9999999988744331 1111111 01
Q ss_pred -----------HHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 317 -----------QRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 317 -----------~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
.+.+.+..+..++++..+++++. ++ +++++| .++.+|.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg------~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPG------TRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCC------CEEEeeEEEECCCCCCC
Confidence 11111112333666778888743 22 445665 68999999999998864
No 418
>PRK06126 hypothetical protein; Provisional
Probab=97.05 E-value=0.0072 Score=65.91 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----------------------------------------
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG----------------------------------------- 307 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~----------------------------------------- 307 (556)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+...+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 357999999999999999999999999999876521100
Q ss_pred ----------CC---------------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEE
Q 008714 308 ----------FD---------------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIEL 350 (556)
Q Consensus 308 ----------~d---------------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~ 350 (556)
+. ..+.+.+.+.+++..++++++++.+++++.++++ +.+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG--VTATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe--EEEEE
Confidence 00 0012233333333258999999999999875433 45555
Q ss_pred ecCCCCCCCceEecCEEEEeeCCCC
Q 008714 351 IDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 351 ~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
.+.. .++..++.+|.||.|.|...
T Consensus 165 ~~~~-~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 165 EDLD-GGESLTIRADYLVGCDGARS 188 (545)
T ss_pred EECC-CCcEEEEEEEEEEecCCcch
Confidence 4421 11224789999999999643
No 419
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.99 E-value=0.0073 Score=63.00 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=68.7
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC------------------CCCCCH----------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL------------------MPGFDP---------------------- 310 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l------------------l~~~d~---------------------- 310 (556)
.|+|||+|+.|.-+|..|++.|.+|.++++++.+ .+.+.+
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 5999999999999999999999999999987532 111111
Q ss_pred -----------HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 311 -----------EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 311 -----------~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
.+-+++.+..++ .|++++.++.+..+..++++.. +....+. .++.++.||.|.|..
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~-aGae~~~~~~~~~~~~~~~~~~--~~~~~~~-----~e~~a~~vI~AdG~~ 151 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEE-AGAELYPGTRVTGVIREDDGVV--VGVRAGD-----DEVRAKVVIDADGVN 151 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHH-cCCEEEeceEEEEEEEeCCcEE--EEEEcCC-----EEEEcCEEEECCCcc
Confidence 122344444555 7999999999999987654532 2222221 589999999999953
No 420
>PLN02697 lycopene epsilon cyclase
Probab=96.98 E-value=0.0066 Score=65.20 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=65.0
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCC------------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGF------------------------------------------ 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~------------------------------------------ 308 (556)
.|+|||+|+.|+-+|..+++.|.+|.++++...+.+..
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V 189 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRV 189 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccEE
Confidence 59999999999999999999999999998653221110
Q ss_pred C-HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 309 D-PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 309 d-~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
+ ..+.+.+.+.+.+ .|+++ .+..++++..++++ ...+.+.++ .++.++.||.|+|...
T Consensus 190 ~R~~L~~~Ll~~a~~-~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 190 SRTLLHEELLRRCVE-SGVSY-LSSKVDRITEASDG-LRLVACEDG------RVIPCRLATVASGAAS 248 (529)
T ss_pred cHHHHHHHHHHHHHh-cCCEE-EeeEEEEEEEcCCc-EEEEEEcCC------cEEECCEEEECCCcCh
Confidence 0 0111333333444 68887 56688888764333 222334454 5899999999999866
No 421
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.98 E-value=0.00091 Score=64.91 Aligned_cols=40 Identities=30% Similarity=0.566 Sum_probs=35.9
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCeEEEecC---CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG---DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk---~~~GG~~~ 140 (556)
.+||+|||+|.|||.||.+|+..|.+|+|+|. ..+||+..
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 58999999999999999999999999999998 45787644
No 422
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.95 E-value=0.011 Score=63.71 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=67.9
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC------------------CCC------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM------------------PGF------------------------ 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll------------------~~~------------------------ 308 (556)
.|+|||+|..|++.|..+++.|.+|.++++..... ..+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998753110 000
Q ss_pred ------------CH-HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 309 ------------DP-EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 309 ------------d~-~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
|+ .+...+.+.+++..++.++.+ .++++..+++++...|.+.+| ..+.+|.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G------~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDG------LKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCC------CEEECCEEEEccCccc
Confidence 11 112344455655347888765 566665433456667777766 5899999999999764
No 423
>PRK09897 hypothetical protein; Provisional
Probab=96.94 E-value=0.011 Score=63.56 Aligned_cols=99 Identities=20% Similarity=0.123 Sum_probs=65.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCCCC-----------------------CCHHHHHHH--------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLMPG-----------------------FDPEIGKLA-------- 316 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll~~-----------------------~d~~~~~~~-------- 316 (556)
++|+|||+|+.|+-+|..|.+.+ .+|++++++..+..+ ..+.+.+++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998765 489999886533211 001111111
Q ss_pred --------------------------------HHHHhCCCc--eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceE
Q 008714 317 --------------------------------QRVLINPRK--IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTL 362 (556)
Q Consensus 317 --------------------------------~~~l~~~~g--V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i 362 (556)
.+.+.+ .| +.++.++.|+.++..+++ +.+.+.++ ...+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~-~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~g-----g~~i 153 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQ-QKFAVAVYESCQVTDLQITNAG--VMLATNQD-----LPSE 153 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHH-cCCeEEEEECCEEEEEEEeCCE--EEEEECCC-----CeEE
Confidence 111222 44 788888899999875433 55665443 1578
Q ss_pred ecCEEEEeeCCCCC
Q 008714 363 EVDAALIATGRAPF 376 (556)
Q Consensus 363 ~~D~vi~a~G~~p~ 376 (556)
.+|.||+|+|..++
T Consensus 154 ~aD~VVLAtGh~~p 167 (534)
T PRK09897 154 TFDLAVIATGHVWP 167 (534)
T ss_pred EcCEEEECCCCCCC
Confidence 99999999998554
No 424
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.93 E-value=0.0064 Score=63.48 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=63.5
Q ss_pred EEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC---------------------------------------------
Q 008714 273 AIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG--------------------------------------------- 307 (556)
Q Consensus 273 ~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~--------------------------------------------- 307 (556)
+|||+|++|+-.|..+++.|.+|+++++.+.+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 58899999998888888888888888876543210
Q ss_pred ----------------------CCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecC
Q 008714 308 ----------------------FDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVD 365 (556)
Q Consensus 308 ----------------------~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D 365 (556)
...++.+.+.+.+++ .|++++.++.++++...+ ..+.+++ ++ .++.+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~-~gv~i~~~~~V~~i~~~~--~~~~v~~-~~------~~i~ad 150 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKE-LGVEILTNSKVKSIKKDD--NGFGVET-SG------GEYEAD 150 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEecC--CeEEEEE-CC------cEEEcC
Confidence 001122333344554 789999999999987643 2344544 32 478999
Q ss_pred EEEEeeCCCC
Q 008714 366 AALIATGRAP 375 (556)
Q Consensus 366 ~vi~a~G~~p 375 (556)
.||+|+|...
T Consensus 151 ~VIlAtG~~s 160 (400)
T TIGR00275 151 KVILATGGLS 160 (400)
T ss_pred EEEECCCCcc
Confidence 9999999744
No 425
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.93 E-value=0.011 Score=61.68 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=71.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC-----------C---------C----------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM-----------P---------G---------------------- 307 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll-----------~---------~---------------------- 307 (556)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... | +
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999876310 0 0
Q ss_pred -----C-------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe-cCCCCCCCceEecCEEE
Q 008714 308 -----F-------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI-DAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 308 -----~-------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~~~~~~~i~~D~vi 368 (556)
+ ..++.+.+.+...+ .|+++++++++++++.. ++..+.|++. +| +..++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~-~gv~v~~~~~v~~i~~~-~~~~~~V~~~~~G----~~~~i~ad~vV 156 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLA-AGGPIRFEASDVALHDF-DSDRPYVTYEKDG----EEHRLDCDFIA 156 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHh-CCCeEEEeeeEEEEEec-CCCceEEEEEcCC----eEEEEEeCEEE
Confidence 0 01112223333344 68999999999888752 2233556663 43 22478999999
Q ss_pred EeeCCCCCCC
Q 008714 369 IATGRAPFTN 378 (556)
Q Consensus 369 ~a~G~~p~~~ 378 (556)
-|-|....+-
T Consensus 157 gADG~~S~vR 166 (392)
T PRK08243 157 GCDGFHGVSR 166 (392)
T ss_pred ECCCCCCchh
Confidence 9999877653
No 426
>PRK07538 hypothetical protein; Provisional
Probab=96.92 E-value=0.013 Score=61.46 Aligned_cols=104 Identities=22% Similarity=0.160 Sum_probs=69.2
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC-----CCH-----------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG-----FDP----------------------------------- 310 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~-----~d~----------------------------------- 310 (556)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+. +.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 6999999999999999999999999999987643210 000
Q ss_pred ---------------------HHHHHHHHHHhCCCc-eEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 311 ---------------------EIGKLAQRVLINPRK-IDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 311 ---------------------~~~~~~~~~l~~~~g-V~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
++.+.+.+.+.+..| +.+++++++++++.++++ +.+.+.++.. ++..++.+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~--~~~~~~~~~~-g~~~~~~adlvI 158 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV--TVVFLGDRAG-GDLVSVRGDVLI 158 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc--eEEEEeccCC-CccceEEeeEEE
Confidence 011122222222134 468899999998875444 4455555421 223589999999
Q ss_pred EeeCCCCCC
Q 008714 369 IATGRAPFT 377 (556)
Q Consensus 369 ~a~G~~p~~ 377 (556)
-|-|....+
T Consensus 159 gADG~~S~v 167 (413)
T PRK07538 159 GADGIHSAV 167 (413)
T ss_pred ECCCCCHHH
Confidence 999976543
No 427
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.88 E-value=0.011 Score=62.52 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=71.3
Q ss_pred eEEEEcCchhHHHHHHHHHh----CCCeEEEEEeCC--CCC------------CC---CC--------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTA----LGSEVTFIEALD--QLM------------PG---FD-------------------- 309 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~----~g~~Vtli~~~~--~ll------------~~---~d-------------------- 309 (556)
.|+|||||+.|+-+|..|++ .|.+|+++++.+ ... ++ +.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 799999999832 210 00 00
Q ss_pred -----------------------------------HHHHHHHHHHHhCCC--ceEEEcCceEEEEEec-----CCCCeEE
Q 008714 310 -----------------------------------PEIGKLAQRVLINPR--KIDYHTGVFATKITPA-----KDGKPVT 347 (556)
Q Consensus 310 -----------------------------------~~~~~~~~~~l~~~~--gV~~~~~~~v~~i~~~-----~~g~~~~ 347 (556)
..+.+.+.+.+.+.. +|+++.++++.+++.. +++..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 012223333444422 5999999999998642 2334577
Q ss_pred EEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 348 IELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 348 v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
+++.+| +++.+|+||-|-|....+-
T Consensus 162 v~~~~g------~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDG------QVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCC------CEEEeeEEEEecCCCChhH
Confidence 888776 6899999999999876653
No 428
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.88 E-value=0.001 Score=70.00 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=27.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC--------------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-------------------------------------------- 306 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-------------------------------------------- 306 (556)
.|+|||||+.|+-.|..+++.|.+|.|+++.+.+-.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 389999999999999999999999999998874410
Q ss_pred -----CCCHHHHH-HHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 307 -----GFDPEIGK-LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 307 -----~~d~~~~~-~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
.++++..+ .+.+.+.+ .||++++++.+.++..+ ++++..|.+.+.. ...++.++.+|-|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~---g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRD-GGRITGVIVETKS---GRKEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccc-ccccccccccccc---cccccccccccccccc
Confidence 01222222 23344544 79999999999999875 4566667765431 1478999999999994
No 429
>PRK06185 hypothetical protein; Provisional
Probab=96.87 E-value=0.011 Score=61.75 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=68.4
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC-----CCC-----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP-----GFD----------------------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~-----~~d----------------------------------- 309 (556)
..|+|||||++|+-+|..|++.|.+|+++++.+.... .+.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~~ 86 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGRT 86 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCeE
Confidence 5799999999999999999999999999997642100 000
Q ss_pred ---------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 310 ---------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 310 ---------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
.++.+.+.+.+.+..|++++.++.++++..+ ++....+.+... +.+.++.+|.||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~---~g~~~i~a~~vI 162 (407)
T PRK06185 87 VTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTP---DGPGEIRADLVV 162 (407)
T ss_pred EEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcC---CCcEEEEeCEEE
Confidence 0112233333333247999999999988765 333333444321 111479999999
Q ss_pred EeeCCCCC
Q 008714 369 IATGRAPF 376 (556)
Q Consensus 369 ~a~G~~p~ 376 (556)
.|.|....
T Consensus 163 ~AdG~~S~ 170 (407)
T PRK06185 163 GADGRHSR 170 (407)
T ss_pred ECCCCchH
Confidence 99998653
No 430
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.84 E-value=0.00092 Score=65.40 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=34.8
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
.+|.|||+|.+||+||..|.++ ++|+++|. +.+||+..
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 5899999999999999999886 79999999 88999765
No 431
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.84 E-value=0.0081 Score=60.65 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=76.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC--CCC---------CHHHHHHHHHHHhCCC-ceEEEcCceEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM--PGF---------DPEIGKLAQRVLINPR-KIDYHTGVFAT 335 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll--~~~---------d~~~~~~~~~~l~~~~-gV~~~~~~~v~ 335 (556)
..++|+|+|+|=.|+-+...|-..-.+|+++.+++.++ |-+ -+.+.+.+.....+.. +++++.. .-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-ec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-ECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-ccE
Confidence 35899999999999999988888789999998887653 222 3456666666654422 5655543 345
Q ss_pred EEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCCCC
Q 008714 336 KITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTNGL 380 (556)
Q Consensus 336 ~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~~l 380 (556)
+|++ +.+.+.++...++....+-.+.+|.+|+|+|-.||+...
T Consensus 133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495|consen 133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC
Confidence 5655 445566654443333444689999999999999998754
No 432
>PRK06996 hypothetical protein; Provisional
Probab=96.82 E-value=0.012 Score=61.36 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=69.8
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC----CeEEEEEeCCCCCCC-------C------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG----SEVTFIEALDQLMPG-------F------------------------------ 308 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g----~~Vtli~~~~~ll~~-------~------------------------------ 308 (556)
..|+|||||+.|+-+|..|++.| .+|+++++.+..-+. +
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 91 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQRG 91 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecCC
Confidence 57999999999999999999986 479999875311000 0
Q ss_pred ----------------------CHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCE
Q 008714 309 ----------------------DPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDA 366 (556)
Q Consensus 309 ----------------------d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~ 366 (556)
-.++.+.+.+.+.+ .+++++.++++++++.+.+ .+++++.++. + ++++.+|+
T Consensus 92 ~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~-~g~~~~~~~~v~~~~~~~~--~v~v~~~~~~--g-~~~i~a~l 165 (398)
T PRK06996 92 HFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRG-TPVRWLTSTTAHAPAQDAD--GVTLALGTPQ--G-ARTLRARI 165 (398)
T ss_pred CCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHh-CCCEEEcCCeeeeeeecCC--eEEEEECCCC--c-ceEEeeeE
Confidence 01233455555655 6899999999988876443 3667776542 1 25799999
Q ss_pred EEEeeCCC
Q 008714 367 ALIATGRA 374 (556)
Q Consensus 367 vi~a~G~~ 374 (556)
||-|-|..
T Consensus 166 vIgADG~~ 173 (398)
T PRK06996 166 AVQAEGGL 173 (398)
T ss_pred EEECCCCC
Confidence 99999964
No 433
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.81 E-value=0.0049 Score=66.34 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=67.2
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccccccCHHH
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQG 182 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (556)
.-+|||||-=|+.+|..|...|.++.|++=.. ..
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~----------------------------------------------~l 180 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP----------------------------------------------TL 180 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecc----------------------------------------------hH
Confidence 36999999999999999999999999995310 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEEe-----cCCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 183 VADHANNLATKIRNNLTNSMKALGVDILTGVGTIL-----GPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-----~~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
+...++.... ..|+..+++.|++++.+..+.. ....+...+|..+.+|.+|.|+|.+|+.
T Consensus 181 MerQLD~~ag---~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 181 MERQLDRTAG---RLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHhhhhHHH---HHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccccc
Confidence 1111111112 2345567778999998765421 2356777889999999999999999874
No 434
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.77 E-value=0.012 Score=61.21 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=29.8
Q ss_pred eEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~ 302 (556)
.|+|||||.+|+-+|..|++. |.+|+++++.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 599999999999999999998 99999999874
No 435
>PRK10015 oxidoreductase; Provisional
Probab=96.74 E-value=0.019 Score=60.51 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=66.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC------------------CCCCC-----------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL------------------MPGFD----------------------- 309 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l------------------l~~~d----------------------- 309 (556)
.|+|||+|+.|+-.|..|++.|.+|.++++.+.+ +|.+.
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESAV 86 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCce
Confidence 6999999999999999999999999999876531 11110
Q ss_pred ---------------------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 310 ---------------------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 310 ---------------------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
..+-+.+.+..++ .|++++.++.++.+..+ +++...+. .++ .++.+|.||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~-~Gv~i~~~~~V~~i~~~-~~~v~~v~-~~~------~~i~A~~VI 157 (429)
T PRK10015 87 TLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ-AGAQFIPGVRVDALVRE-GNKVTGVQ-AGD------DILEANVVI 157 (429)
T ss_pred EeecccCCCCCCCcCceEeehhHHHHHHHHHHHH-cCCEEECCcEEEEEEEe-CCEEEEEE-eCC------eEEECCEEE
Confidence 0011223444444 78999999999888754 23322232 222 479999999
Q ss_pred EeeCCCCC
Q 008714 369 IATGRAPF 376 (556)
Q Consensus 369 ~a~G~~p~ 376 (556)
.|.|....
T Consensus 158 ~AdG~~s~ 165 (429)
T PRK10015 158 LADGVNSM 165 (429)
T ss_pred EccCcchh
Confidence 99997544
No 436
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.73 E-value=0.012 Score=62.33 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 314 KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 314 ~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
+.+.+...+ .||+++.++ |+++..++++.+..|++.+| .++++|.+|=|+|++...
T Consensus 158 ~~L~~~A~~-~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g------~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 158 QFLRRHAEE-RGVEVIEGT-VVDVELDEDGRITAVRLDDG------RTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHH-TT-EEEET--EEEEEE-TTSEEEEEEETTS------EEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHhc-CCCEEEeCE-EEEEEEcCCCCEEEEEECCC------CEEEEeEEEECCCccchh
Confidence 344444455 799999885 77777776777778888887 789999999999996654
No 437
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.71 E-value=0.023 Score=59.03 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=66.3
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeC-CCCC-----------CCC------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL-DQLM-----------PGF------------------------------ 308 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~-~~ll-----------~~~------------------------------ 308 (556)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... ..+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 4899999999999999999999999999986 2110 000
Q ss_pred --------CH-HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCC--CCCCCceEecCEEEEeeCCCCC
Q 008714 309 --------DP-EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAK--TKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 309 --------d~-~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~--~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
+. .+-+.+.+...+ .|++++.+ .++++..+++ .+.+++.++. ..++..++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~-~G~~v~~~-~v~~v~~~~~--~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQK-AGAELIHG-LFLKLERDRD--GVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHh-CCCEEEee-EEEEEEEcCC--eEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 00 111233333444 68888765 5788876433 3556665421 0112357999999999996543
No 438
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.70 E-value=0.022 Score=59.29 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 35799999999999999999999999999998764
No 439
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.68 E-value=0.0017 Score=65.37 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=34.1
Q ss_pred CccEEEECCChHHHHHHHHHHHcCCe--EEEecC-CcCCcccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEKGLK--TAIIEG-DVVGGTCV 140 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~g~~--V~viEk-~~~GG~~~ 140 (556)
..+|+|+|||.+||++|+.|++++.+ ++|+|+ +++||-..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 36899999999999999999999655 566999 88998443
No 440
>PRK11445 putative oxidoreductase; Provisional
Probab=96.68 E-value=0.02 Score=58.67 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=66.2
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC--C-----C--CCHHHH----------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM--P-----G--FDPEIG---------------------------- 313 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll--~-----~--~d~~~~---------------------------- 313 (556)
.|+|||+|+.|+-+|..|++. .+|+++++.+..- + + +.+...
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999876320 0 0 111000
Q ss_pred ---------------------HHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEe-cCCCCCCCceEecCEEEEee
Q 008714 314 ---------------------KLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELI-DAKTKEPKDTLEVDAALIAT 371 (556)
Q Consensus 314 ---------------------~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~-~g~~~~~~~~i~~D~vi~a~ 371 (556)
+.+.+. .+ .|++++.++.+++++..+++ +.+.+. ++ ...++.+|.||.|.
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~-~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g----~~~~i~a~~vV~Ad 153 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSL-IP-ASVEVYHNSLCRKIWREDDG--YHVIFRADG----WEQHITARYLVGAD 153 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHH-Hh-cCCEEEcCCEEEEEEEcCCE--EEEEEecCC----cEEEEEeCEEEECC
Confidence 111111 22 57899999999998865443 455553 33 12368999999999
Q ss_pred CCCCCC
Q 008714 372 GRAPFT 377 (556)
Q Consensus 372 G~~p~~ 377 (556)
|.....
T Consensus 154 G~~S~v 159 (351)
T PRK11445 154 GANSMV 159 (351)
T ss_pred CCCcHH
Confidence 986543
No 441
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.65 E-value=0.0059 Score=63.37 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=32.2
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLM 305 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll 305 (556)
+|+|||||..|+|+|..|++.|.+|+++++++.++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 69999999999999999999999999999877653
No 442
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.64 E-value=0.02 Score=54.93 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCccEEEECCChHHHHHHHHHHHcC------CeEEEecCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKG------LKTAIIEGDV 134 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g------~~V~viEk~~ 134 (556)
...+|+|+|||..|..+|+.|.+++ ..|+|||...
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 3468999999999999999999986 7899999844
No 443
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.64 E-value=0.016 Score=61.58 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+|||+|..|+.+|..|++.|++|+++|+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~ 36 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDE 36 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5799999999999999999999999999987
No 444
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.63 E-value=0.039 Score=61.07 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=72.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhC-CCeEEEEEeCCCCCCC-----CC----------------------------------
Q 008714 270 DWIAIVGSGYIGLEFSDVYTAL-GSEVTFIEALDQLMPG-----FD---------------------------------- 309 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~-g~~Vtli~~~~~ll~~-----~d---------------------------------- 309 (556)
-.|+|||+|+.|+-+|..|++. |.+|+++++.+..... +.
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~~ 112 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDPA 112 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCCc
Confidence 4799999999999999999995 9999999877522110 00
Q ss_pred ----------------------------HHHHHHHHHHHhCCCc--eEEEcCceEEEEEecCC-CCeEEEEEecCCC--C
Q 008714 310 ----------------------------PEIGKLAQRVLINPRK--IDYHTGVFATKITPAKD-GKPVTIELIDAKT--K 356 (556)
Q Consensus 310 ----------------------------~~~~~~~~~~l~~~~g--V~~~~~~~v~~i~~~~~-g~~~~v~~~~g~~--~ 356 (556)
..+.+.+.+.+.+ .+ +++..++++++++.+++ +..+++++.+.+. .
T Consensus 113 ~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~-~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 113 DPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRN-SPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred cccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHh-cCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 0122333344433 33 67788999999876533 2457777765311 1
Q ss_pred CCCceEecCEEEEeeCCCCCC
Q 008714 357 EPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 357 ~~~~~i~~D~vi~a~G~~p~~ 377 (556)
++.+++.+|.||-|-|.+..+
T Consensus 192 g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CceEEEEeCEEEECCCCchHH
Confidence 223589999999999987655
No 445
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.61 E-value=0.00058 Score=61.98 Aligned_cols=39 Identities=41% Similarity=0.599 Sum_probs=33.0
Q ss_pred ccEEEECCChHHHHHHHHHHHc--CCeEEEecC--CcCCcccc
Q 008714 102 YDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG--DVVGGTCV 140 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk--~~~GG~~~ 140 (556)
.||+|||+|.+||+||+...+. +++|.|||. ..=||.|+
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 5999999999999999998865 789999998 34456665
No 446
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.58 E-value=0.0026 Score=64.43 Aligned_cols=48 Identities=35% Similarity=0.596 Sum_probs=42.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccccCCCCc
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVNRGCVPS 147 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~~g~ips 147 (556)
..||++|||+|.-||.||..|++.|.+|+++|+ ...||..+..-.+|-
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG 61 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG 61 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccc
Confidence 359999999999999999999999999999999 688988876666664
No 447
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.57 E-value=0.0086 Score=59.98 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=65.4
Q ss_pred CccEEEECCChHHHHHHHHHHHc----CCeEE-EecCCcCCccccccCCCCchhhHhhhHHHHHhhhhhhhhhcCccccc
Q 008714 101 DYDLIIIGAGVGGHGAALHAVEK----GLKTA-IIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHA 175 (556)
Q Consensus 101 ~~dVvIIGgG~aGl~aA~~l~~~----g~~V~-viEk~~~GG~~~~~g~ips~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 175 (556)
...|-|||+|.-|-..|+.|.+. |.+|. ||+..
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek------------------------------------------ 384 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK------------------------------------------ 384 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc------------------------------------------
Confidence 35799999999999999999986 44443 23210
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEeceEEE-----ecCCEEEEccceEEEeCeEEEeCCCCCCC
Q 008714 176 AGYDRQGVADHANNLATKIRNNLTNSMKALGVDILTGVGTI-----LGPQKVKFGTDNIVTAKDIIIATGSVPFV 245 (556)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-----~~~~~v~~~~~~~~~~d~lViAtG~~p~~ 245 (556)
++...+ +.+.+.+|..+.+++.||+++....+. ...-.+.+.+|.++..|.||+|+|..|+.
T Consensus 385 --~nm~ki------LPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 385 --YNMEKI------LPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred --CChhhh------hHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 111000 113455666777888899999876431 12234667899999999999999999874
No 448
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.57 E-value=0.023 Score=62.45 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
..+.+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 445789999999999999999999999999999865
No 449
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.55 E-value=0.023 Score=50.74 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=30.0
Q ss_pred ceEEE-cCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 325 KIDYH-TGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 325 gV~~~-~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
+|++. ...+|+.|...+++ ..+.+.+| ..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g------~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG--YRVVTADG------QSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc--EEEEECCC------CEEEeCEEEECCCC
Confidence 44443 34588888886554 56777777 68899999999995
No 450
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.52 E-value=0.0099 Score=60.89 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=53.8
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC----------CCCHHHHH--HHHHHHhCCCceEEEcCceEEE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP----------GFDPEIGK--LAQRVLINPRKIDYHTGVFATK 336 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~----------~~d~~~~~--~~~~~l~~~~gV~~~~~~~v~~ 336 (556)
.++++|||||..|++.|..|++.|.+|+++++.+.+-. ..|..+-- ..+....+.-+|++++.+.|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 48999999999999999999999999999999886632 22222111 1222233336899999999999
Q ss_pred EEec
Q 008714 337 ITPA 340 (556)
Q Consensus 337 i~~~ 340 (556)
|.+.
T Consensus 204 v~G~ 207 (622)
T COG1148 204 VSGS 207 (622)
T ss_pred eccc
Confidence 8765
No 451
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.49 E-value=0.046 Score=57.07 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=30.4
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 699999999999999999999999999997643
No 452
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.45 E-value=0.034 Score=57.54 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=66.8
Q ss_pred EEEEcCchhHHHHHHHH--HhCCCeEEEEEeCCCCC-C-C-----CC---------------------------------
Q 008714 272 IAIVGSGYIGLEFSDVY--TALGSEVTFIEALDQLM-P-G-----FD--------------------------------- 309 (556)
Q Consensus 272 v~VvG~G~~g~e~A~~l--~~~g~~Vtli~~~~~ll-~-~-----~d--------------------------------- 309 (556)
|+|||+|+.|+-+|..| .+.|.+|.++++.+... + . ..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 79999999999999999 77899999998776541 1 0 00
Q ss_pred -----HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 310 -----PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 310 -----~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
.++.+.+.+.+.. .++ ++.+..|++|+..++ ...+.+.+| .++.++.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~-~~~-~~~~~~V~~i~~~~~--~~~v~~~~g------~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAA-GGV-IRLNARVTSIEETGD--GVLVVLADG------RTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhh-CCe-EEEccEEEEEEecCc--eEEEEECCC------CEEEeeEEEECCCcccc
Confidence 1122333333432 444 566778999987543 356777777 68999999999996554
No 453
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.44 E-value=0.033 Score=57.57 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=29.5
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.|+|||||.+|+-+|..|++.|.+|++++++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999999999998764
No 454
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.39 E-value=0.0032 Score=68.23 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=32.4
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..++|+||||+|.+|..+|.+|++.|.+|+|+|++
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 45699999999999999999999889999999983
No 455
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.39 E-value=0.088 Score=55.77 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=37.3
Q ss_pred eEecccccccCCCCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 255 TVITSDHALKLEFVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 255 ~v~t~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
.+.++..-..+....-.|+|||||+.|+-+|..|++.|.+|.++++.+
T Consensus 25 ~~~~~~~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 25 RVLAAAASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred eeeecCCCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 344443333344455689999999999999999999999999999774
No 456
>PLN02785 Protein HOTHEAD
Probab=96.38 E-value=0.0045 Score=67.62 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=30.5
Q ss_pred CCccEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
..||+||||||.||+.+|.+|.+ +.+|+|||++
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G 86 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG 86 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence 35999999999999999999999 6999999993
No 457
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.29 E-value=0.0069 Score=45.68 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=28.5
Q ss_pred EEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 274 IVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 274 VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
|||+|.+|+-.|..|++.|.+|+++++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999998865
No 458
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.28 E-value=0.0033 Score=68.25 Aligned_cols=60 Identities=13% Similarity=0.217 Sum_probs=40.3
Q ss_pred HHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 315 LAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 315 ~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
++.....+ .+++++.++.|.+|.-+ +++.+.|++.++. +....+.++.||+|.|..-...
T Consensus 199 ~l~~a~~r-~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~--~~~~~~~ak~VIlaAGai~SP~ 258 (532)
T TIGR01810 199 YLHPAMKR-PNLEVQTRAFVTKINFE-GNRATGVEFKKGG--RKEHTEANKEVILSAGAINSPQ 258 (532)
T ss_pred HhhhhccC-CCeEEEeCCEEEEEEec-CCeEEEEEEEeCC--cEEEEEEeeeEEEccCCCCCHH
Confidence 34443334 68999999999999875 4566667765531 1123468999999999644443
No 459
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.016 Score=61.78 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
.|+|||.|++|+++|..|+++|++|+++|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4899999999999999999999999999973
No 460
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.24 E-value=0.033 Score=60.61 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=30.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 369999999999999999999999999998764
No 461
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=0.016 Score=60.46 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=66.9
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC---CC-----------------------------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL---MP----------------------------------------- 306 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l---l~----------------------------------------- 306 (556)
.|+|||||-.|+|.|...++.|.++.++.-...- ||
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~s 85 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNSS 85 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccCC
Confidence 5999999999999999999999998876543210 00
Q ss_pred ----------CCCH-HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 307 ----------GFDP-EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 307 ----------~~d~-~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
..|. .+.+.+++.+++..++.++.+. +.++..+++.+++.|.+.+| ..+.++.||++||.
T Consensus 86 KGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G------~~~~a~aVVlTTGT 156 (621)
T COG0445 86 KGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADG------PEFHAKAVVLTTGT 156 (621)
T ss_pred CcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCC------CeeecCEEEEeecc
Confidence 0111 2335566667766778776654 44554432324677888887 79999999999994
No 462
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.14 E-value=0.04 Score=52.49 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=64.4
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCC----------C----------CHHHHHH---------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG----------F----------DPEIGKL--------------- 315 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~----------~----------d~~~~~~--------------- 315 (556)
+|+|||+|..|+-.|..|+..|.+||+++++..+-.+ | ++-+.+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 6999999999999999999999999999877533210 1 1111111
Q ss_pred ---------------------------HHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEE
Q 008714 316 ---------------------------AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAAL 368 (556)
Q Consensus 316 ---------------------------~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi 368 (556)
+.+.|. ...++.++++|+++... ++..++...+| .....+|.|+
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA--tdL~V~~~~rVt~v~~~--~~~W~l~~~~g-----~~~~~~d~vv 153 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA--TDLTVVLETRVTEVART--DNDWTLHTDDG-----TRHTQFDDVV 153 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHh--ccchhhhhhhhhhheec--CCeeEEEecCC-----CcccccceEE
Confidence 222232 24567778888888765 33466776655 2577899999
Q ss_pred EeeCC
Q 008714 369 IATGR 373 (556)
Q Consensus 369 ~a~G~ 373 (556)
+++.-
T Consensus 154 la~PA 158 (331)
T COG3380 154 LAIPA 158 (331)
T ss_pred EecCC
Confidence 98765
No 463
>PLN02985 squalene monooxygenase
Probab=95.96 E-value=0.077 Score=57.23 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=29.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 468999999999999999999999999998764
No 464
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.021 Score=56.09 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC--CCCC-----------C-CCCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL--DQLM-----------P-GFDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~--~~ll-----------~-~~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
+=.|+|||||+.|...|-+.+|.|.+.-++..+ .+++ | ...+++...+++..++ +.|.++...+.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~-Y~vDimn~qra 289 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQ-YDVDVMNLQRA 289 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhh-cCchhhhhhhh
Confidence 457999999999999999988888665443110 0011 1 2457888889998877 99999888888
Q ss_pred EEEEecC-CCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 335 TKITPAK-DGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 335 ~~i~~~~-~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
+++++.. .+...+|++.+| -.+++..+|++||-+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nG------avLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANG------AVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEecCC------ceeccceEEEecCcc
Confidence 8887642 345678999988 689999999999964
No 465
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.84 E-value=0.13 Score=52.83 Aligned_cols=107 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCeEEEecC-CcCC--------ccccccCCCCchhhHhhh----HHHHHhhhhhhhhhcCccccccccCHHHHHHHHHH-
Q 008714 124 GLKTAIIEG-DVVG--------GTCVNRGCVPSKALLAVS----GRMRELQSEHHMKALGLQVHAAGYDRQGVADHANN- 189 (556)
Q Consensus 124 g~~V~viEk-~~~G--------G~~~~~g~ips~~l~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~- 189 (556)
|.+|+|+|| +++| |+|+....-+...+.... ..+...-.. |+..++..+...
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~--------------f~~~d~~~fF~~~ 66 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEA--------------FDAVALQDWARGL 66 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHh--------------CCHHHHHHHHHHC
Q ss_pred -----------------HHHHHHHHHHHHHHHcCcEEEeceEE---EecCCEEEEccc-eEEEeCeEEEeCCCCCC
Q 008714 190 -----------------LATKIRNNLTNSMKALGVDILTGVGT---ILGPQKVKFGTD-NIVTAKDIIIATGSVPF 244 (556)
Q Consensus 190 -----------------~~~~~~~~~~~~~~~~gv~~~~g~~~---~~~~~~v~~~~~-~~~~~d~lViAtG~~p~ 244 (556)
....+.+.+...+++.||+++.+..+ ..+.+.+.+..+ ..+.+|+||||||+.+.
T Consensus 67 Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 67 GIETFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGASW 142 (376)
T ss_pred CCceEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCccc
No 466
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.77 E-value=0.0044 Score=64.17 Aligned_cols=41 Identities=44% Similarity=0.810 Sum_probs=35.3
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecCCcCC-ccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEGDVVG-GTC 139 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~~~G-G~~ 139 (556)
...+||+|||||..|-.||.-++-+|+++.++|++.++ |+.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 34599999999999999999999999999999995543 443
No 467
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.68 E-value=0.12 Score=55.89 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=30.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
-.|+|||||.+|+-+|..+++.|.+|+++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 359999999999999999999999999999764
No 468
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.62 E-value=0.013 Score=62.64 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.1
Q ss_pred CCCCccEEEECCChHHHHHHHHHHHc-CCeEEEecC
Q 008714 98 KSFDYDLIIIGAGVGGHGAALHAVEK-GLKTAIIEG 132 (556)
Q Consensus 98 ~~~~~dVvIIGgG~aGl~aA~~l~~~-g~~V~viEk 132 (556)
....||.||||||.||+..|.+|.+. .++|+|+|+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEa 89 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEA 89 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEec
Confidence 44569999999999999999999997 799999998
No 469
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.096 Score=48.42 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=66.3
Q ss_pred CCeEEEEcCchhHHHHHHHHHhCCCeEEEEEe--------CCC--------CCCCC-----CHHHHHHHHHHHhCCCceE
Q 008714 269 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEA--------LDQ--------LMPGF-----DPEIGKLAQRVLINPRKID 327 (556)
Q Consensus 269 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~--------~~~--------ll~~~-----d~~~~~~~~~~l~~~~gV~ 327 (556)
..+|+|||+|+.+.-.|.++++...+-.+++- +.+ -+|+| .+++.+.+.++-++ .|.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r-~Gt~ 86 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSER-FGTE 86 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHh-hcce
Confidence 35899999999999999888877655444431 111 13444 36677777777776 8888
Q ss_pred EEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCCCC
Q 008714 328 YHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAPFT 377 (556)
Q Consensus 328 ~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~ 377 (556)
++.. .|.+++. ..+...+.. |. +.+.+|.||+|||-....
T Consensus 87 i~tE-tVskv~~--sskpF~l~t-d~------~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 87 IITE-TVSKVDL--SSKPFKLWT-DA------RPVTADAVILATGASAKR 126 (322)
T ss_pred eeee-ehhhccc--cCCCeEEEe-cC------CceeeeeEEEecccceee
Confidence 8775 4666654 334444433 32 688999999999976543
No 470
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.46 E-value=0.018 Score=55.81 Aligned_cols=37 Identities=30% Similarity=0.540 Sum_probs=32.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHc--CCeEEEecC-CcCC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK--GLKTAIIEG-DVVG 136 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~viEk-~~~G 136 (556)
.+||+||||||..|++.|++|.-+ +.+|.|+|+ ..++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 459999999999999999998876 899999999 4443
No 471
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.24 E-value=0.025 Score=58.47 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~l 304 (556)
++|+|||||.+|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976654
No 472
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.08 E-value=0.076 Score=56.42 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=55.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEE
Q 008714 268 VPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVT 347 (556)
Q Consensus 268 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~ 347 (556)
..++++|+|+|.+|+.+|..|.+.|.+|+++++.+. +.+.+.+ +.+.+ .|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~~~~~-~~l~~-~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQLKEAL-EELGE-LGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHHHHHH-HHHHh-cCCEEEeCCcchh-----------
Confidence 368999999999999999999999999999987541 2232222 33444 5776554432210
Q ss_pred EEEecCCCCCCCceEecCEEEEeeCCCCCCC
Q 008714 348 IELIDAKTKEPKDTLEVDAALIATGRAPFTN 378 (556)
Q Consensus 348 v~~~~g~~~~~~~~i~~D~vi~a~G~~p~~~ 378 (556)
..-.+|+||.++|..|+..
T Consensus 65 ------------~~~~~d~vv~~~g~~~~~~ 83 (450)
T PRK14106 65 ------------FLEGVDLVVVSPGVPLDSP 83 (450)
T ss_pred ------------HhhcCCEEEECCCCCCCCH
Confidence 1124799999999887765
No 473
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.05 E-value=0.26 Score=52.62 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=29.0
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999999998875
No 474
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.88 E-value=0.11 Score=45.86 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=27.5
Q ss_pred EEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 104 LIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 104 VvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
|+|||+|..|...|..|.+.|.+|+++.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence 68999999999999999999999999976
No 475
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.17 Score=52.05 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=27.6
Q ss_pred eEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 271 WIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
.|+|||||-.|+|.|.+.++.|.+.+++..+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 6999999999999999999999988877543
No 476
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.81 E-value=0.11 Score=52.84 Aligned_cols=105 Identities=23% Similarity=0.335 Sum_probs=62.1
Q ss_pred eEEEEcCchhHHHHHHHHHhCC-CeEEEEEeCCCC-------CCC------C--------C-------------------
Q 008714 271 WIAIVGSGYIGLEFSDVYTALG-SEVTFIEALDQL-------MPG------F--------D------------------- 309 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~g-~~Vtli~~~~~l-------l~~------~--------d------------------- 309 (556)
.+++||.|+.++-+|..|...+ .++.++++.+.+ +++ | +
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 3789999999999999998876 888999987744 110 0 0
Q ss_pred -----------HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCC--CeEEEEEecCCCCCCCceEecCEEEEeeCCCCC
Q 008714 310 -----------PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDG--KPVTIELIDAKTKEPKDTLEVDAALIATGRAPF 376 (556)
Q Consensus 310 -----------~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g--~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p~ 376 (556)
.++.++++...++ ..-.+..+..|++|+...++ ....|+..+. .+....+.++.|++++|..|.
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~-~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~--~g~~~~~~ar~vVla~G~~P~ 160 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQ-LDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS--DGDGETYRARNVVLATGGQPR 160 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCC-GTTTEEESEEEEEEEEEEETTEEEEEEEEEET--TS-EEEEEESEEEE----EE-
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHh-CCCceEECCEEEEEEEecCCCccEEEEEEeec--CCCeeEEEeCeEEECcCCCCC
Confidence 2344555444444 55447789999999886544 2456666431 223478999999999999988
Q ss_pred CC
Q 008714 377 TN 378 (556)
Q Consensus 377 ~~ 378 (556)
..
T Consensus 161 iP 162 (341)
T PF13434_consen 161 IP 162 (341)
T ss_dssp --
T ss_pred CC
Confidence 65
No 477
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=0.26 Score=51.21 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.2
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC---CeEEEEEeCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG---SEVTFIEALDQL 304 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g---~~Vtli~~~~~l 304 (556)
.+|+|||+|++|+.+|..|.+.- ..|+++++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 47999999999999999998753 238888777644
No 478
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.61 E-value=0.031 Score=56.34 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=29.3
Q ss_pred CCccEEEECCChHHHHHHHHHHHc----CCeEEEecC
Q 008714 100 FDYDLIIIGAGVGGHGAALHAVEK----GLKTAIIEG 132 (556)
Q Consensus 100 ~~~dVvIIGgG~aGl~aA~~l~~~----g~~V~viEk 132 (556)
..|||||+||||.|++.|..|... .+||+|+|.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~ 71 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDA 71 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEec
Confidence 359999999999999999999864 678999997
No 479
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.55 E-value=0.41 Score=51.40 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCC
Q 008714 316 AQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRA 374 (556)
Q Consensus 316 ~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~ 374 (556)
+.+.+++..||+++.++.++++..+ +++...+...+. ++...+.++.||+|+|-.
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~---~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNR---ETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEEC---CcEEEEEcCEEEECCCcc
Confidence 3333433247899999988888754 444444554432 122468999999999953
No 480
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.53 E-value=0.2 Score=50.93 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.1
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQ 303 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ 303 (556)
.+|+|||||..|+-.|..|.+.|.+|.+++.+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5799999999999999999999999999987653
No 481
>PRK08275 putative oxidoreductase; Provisional
Probab=94.52 E-value=0.46 Score=51.91 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 311 EIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 311 ~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
.+.+.+.+.+++ .||+++.++.++++..+++++...+...+.. .++...+.++.||+|+|-..
T Consensus 138 ~i~~~L~~~~~~-~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~-~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKR-ARVLITNRIMATRLLTDADGRVAGALGFDCR-TGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHH-CCCEEEcceEEEEEEEcCCCeEEEEEEEecC-CCcEEEEECCEEEECCCCcc
Confidence 344555565655 7899999999999876535555555432210 11224688999999999754
No 482
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.50 E-value=0.053 Score=56.56 Aligned_cols=43 Identities=30% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCCccEEEECCChHHHHHHHHHHHcCCeEEEecC-CcCCccccc
Q 008714 99 SFDYDLIIIGAGVGGHGAALHAVEKGLKTAIIEG-DVVGGTCVN 141 (556)
Q Consensus 99 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~~ 141 (556)
+.+|||||+|.|..-...|..|++.|.+|+.+|+ +-.||.|..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 4579999999999999999999999999999999 778888764
No 483
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.45 E-value=0.43 Score=51.91 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=25.6
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
-.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 358888888888888888888888888877654
No 484
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=94.29 E-value=0.48 Score=51.94 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=28.0
Q ss_pred EEEEcCchhHHHHHHHHHhCCCeEEEEEeCC
Q 008714 272 IAIVGSGYIGLEFSDVYTALGSEVTFIEALD 302 (556)
Q Consensus 272 v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~ 302 (556)
|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 2 VlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 2 VVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred EEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 8999999999999999999999999998653
No 485
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=94.27 E-value=0.62 Score=46.08 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=37.1
Q ss_pred HHHHhCCCceEEEcCceEEEEEec-CCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 317 QRVLINPRKIDYHTGVFATKITPA-KDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 317 ~~~l~~~~gV~~~~~~~v~~i~~~-~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
+..+.+ .|+.++.+..+..++-. +++..+.|.+++| ..+.++.+|+++|-
T Consensus 160 ~~~~~~-~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g------s~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 160 QDKARE-LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDG------SIYHAKKIIFTVGA 210 (399)
T ss_pred HHHHHH-cCeEEecCcceeeEeeccCCCceeEEEeccC------CeeecceEEEEecH
Confidence 333454 89999999888777632 2455677888877 57999999999994
No 486
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.27 E-value=0.41 Score=52.18 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 310 PEIGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 310 ~~~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
.++.+.+.+.+++ .||+++.++.++++..+++++.+.+...+.. .++...+.++.||+|||-
T Consensus 134 ~~i~~~L~~~~~~-~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~-~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 134 HEMMMGLMEYLIK-ERIKILEEVMAIKLIVDENREVIGAIFLDLR-NGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHhc-CCCEEEeCeEeeeeEEeCCcEEEEEEEEECC-CCcEEEEEcCcEEECCCC
Confidence 3455556666665 7899999999999876533335555443210 112246889999999995
No 487
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.12 E-value=0.58 Score=49.39 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCceEEEcCceEEEEEecCCCCeEEEEE-ecCCCCCCCceEecCEEEEeeCCCC
Q 008714 312 IGKLAQRVLINPRKIDYHTGVFATKITPAKDGKPVTIEL-IDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 312 ~~~~~~~~l~~~~gV~~~~~~~v~~i~~~~~g~~~~v~~-~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
+.+.+.+.+++..||+++.++.++++..+ +++.+.+.. .++ +...+.++.||+|+|--.
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g----~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDN----KQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECC----cEEEEEcCeEEEccCccc
Confidence 33444444444358999999999998754 454444432 232 123688999999999643
No 488
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.11 E-value=0.071 Score=56.89 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhCCCeEEEEEeCCCCCC
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMP 306 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~~~ll~ 306 (556)
...++|+|||+|.+|+-.|..|.++|.+|++++.++++-.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3457999999999999999999999999999999987743
No 489
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.04 E-value=0.21 Score=50.04 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCCCC--------CC--CCHHHHHHHHHHHhCCCceEEEcCceE
Q 008714 267 FVPDWIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQLM--------PG--FDPEIGKLAQRVLINPRKIDYHTGVFA 334 (556)
Q Consensus 267 ~~~~~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~ll--------~~--~d~~~~~~~~~~l~~~~gV~~~~~~~v 334 (556)
..| +|.|||+|+.|+..|..|.+. +.+|+++++.+..+ |. ..+.....+.+.++. ....++.|..|
T Consensus 19 ~~p-~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~-~rfsf~gNv~v 96 (468)
T KOG1800|consen 19 STP-RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEH-ERFSFFGNVKV 96 (468)
T ss_pred CCc-eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhc-cceEEEeccee
Confidence 344 899999999999999988874 58999999887553 22 122233445555554 56777766443
Q ss_pred EEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCCCC
Q 008714 335 TKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGRAP 375 (556)
Q Consensus 335 ~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~~p 375 (556)
-+ + +.+.+ -+-.+|.|++|.|..-
T Consensus 97 G~-----d-----vsl~e-------L~~~ydavvLaYGa~~ 120 (468)
T KOG1800|consen 97 GR-----D-----VSLKE-------LTDNYDAVVLAYGADG 120 (468)
T ss_pred cc-----c-----ccHHH-------HhhcccEEEEEecCCC
Confidence 10 1 22221 2345788888888643
No 490
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.03 E-value=0.13 Score=58.44 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=30.7
Q ss_pred eEEEEcCchhHHHHHHHHHhC--CCeEEEEEeCCC
Q 008714 271 WIAIVGSGYIGLEFSDVYTAL--GSEVTFIEALDQ 303 (556)
Q Consensus 271 ~v~VvG~G~~g~e~A~~l~~~--g~~Vtli~~~~~ 303 (556)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 799999999999999999998 899999998875
No 491
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.97 E-value=0.052 Score=53.09 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=29.2
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
..|.|||||.||..||.+++++|.+|.++|-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EM 34 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEM 34 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEc
Confidence 4599999999999999999999999999995
No 492
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.88 E-value=0.054 Score=56.59 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHcCCeEEEecC-CcCCcccc
Q 008714 111 VGGHGAALHAVEKGLKTAIIEG-DVVGGTCV 140 (556)
Q Consensus 111 ~aGl~aA~~l~~~g~~V~viEk-~~~GG~~~ 140 (556)
.|||+||..|++.|++|+|+|+ +++||.+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence 4899999999999999999999 99999887
No 493
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=93.75 E-value=0.8 Score=50.57 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=30.0
Q ss_pred ceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 325 KIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 325 gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
||+++.++.+.++..+ +++...+...+.. .++...+.++.||+|+|-
T Consensus 147 gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~-~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 147 GDNVLNRVFITDLLVD-DNRIAGAVGFSVR-ENKFYVFKAKAVIVATGG 193 (608)
T ss_pred CCEEEeCCEEEEEEEe-CCEEEEEEEEEcc-CCcEEEEECCEEEECCCc
Confidence 4999999999888654 3444444321110 112246889999999993
No 494
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.65 E-value=0.081 Score=54.97 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=30.7
Q ss_pred CeEEEEcCchhHHHHHHHHHhCCCeEEEEEeC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 301 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtli~~~ 301 (556)
..|+|||||+.|+-+|..|++.|.+|+++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999997
No 495
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.57 Score=49.90 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=29.3
Q ss_pred ccEEEECCChHHHHHHHHHHHcCCeEEEecC
Q 008714 102 YDLIIIGAGVGGHGAALHAVEKGLKTAIIEG 132 (556)
Q Consensus 102 ~dVvIIGgG~aGl~aA~~l~~~g~~V~viEk 132 (556)
.+|+|+|.|.+|+++|..|++.|++|++.|+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECC
Confidence 4799999999999999999999999999997
No 496
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.53 E-value=0.89 Score=50.51 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=32.7
Q ss_pred CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeCC
Q 008714 324 RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATGR 373 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G~ 373 (556)
.||+++.++.++++..+ +++.+.+...+.. .+....+.++.||+|||-
T Consensus 183 ~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~-~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 183 GTVKMYTRTEMLDLVVV-DGRARGIVARNLV-TGEIERHTADAVVLATGG 230 (640)
T ss_pred cCCEEEeceEEEEEEEe-CCEEEEEEEEECC-CCcEEEEECCEEEECCCC
Confidence 67888888888888654 4555556554321 112246899999999994
No 497
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.42 E-value=0.099 Score=55.43 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=32.3
Q ss_pred CeEEEEcCchhHHHHHHHHHhCC--CeEEEEEeCCCCC
Q 008714 270 DWIAIVGSGYIGLEFSDVYTALG--SEVTFIEALDQLM 305 (556)
Q Consensus 270 ~~v~VvG~G~~g~e~A~~l~~~g--~~Vtli~~~~~ll 305 (556)
++|+|||||.+|+-.|..|++.| .+|++++.++++-
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 57999999999999999999987 8999999887653
No 498
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.41 E-value=0.89 Score=49.78 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=32.3
Q ss_pred CceEEEcCceEEEEEecCCCCeEEEEEecCCCCCCCceEecCEEEEeeC
Q 008714 324 RKIDYHTGVFATKITPAKDGKPVTIELIDAKTKEPKDTLEVDAALIATG 372 (556)
Q Consensus 324 ~gV~~~~~~~v~~i~~~~~g~~~~v~~~~g~~~~~~~~i~~D~vi~a~G 372 (556)
.||+++.++.++++..+ +|+.+.+...+... ++...+.++.||+|||
T Consensus 149 ~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~-g~~~~i~AkaVVLATG 195 (566)
T PRK06452 149 LNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKT-LTPFFFKTKAVVLATG 195 (566)
T ss_pred CCCEEEeCcEEEEEEEE-CCEEEEEEEEECCC-CeEEEEEeCeEEECCC
Confidence 57888888888887764 56666665543211 1224688999999999
No 499
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.41 E-value=0.1 Score=52.75 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
++.|||.|.-||..|.-+++.|++|+++|.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 6899999999999999999999999999973
No 500
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.41 E-value=0.098 Score=46.75 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHcCCeEEEecCC
Q 008714 103 DLIIIGAGVGGHGAALHAVEKGLKTAIIEGD 133 (556)
Q Consensus 103 dVvIIGgG~aGl~aA~~l~~~g~~V~viEk~ 133 (556)
+|.|||||..|.++|..|++.|++|++..++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 4899999999999999999999999999873
Done!